BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016429
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYP|A Chain A, Crystal Structure Of Rv0805 D66a Mutant
Length = 280
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 80/224 (35%), Gaps = 75/224 (33%)
Query: 87 SAEKPDLIVFTGDNIFGFDATDAA----KSLNAAFAPAIASNIPWVAVLGNHDQESTLSR 142
S +PD IVFTGD AA + L FA + + + W V+GNHD + L +
Sbjct: 53 SGLRPDAIVFTGD--LAAKGEPAAYRKLRGLVEPFAAQLGAELVW--VMGNHDDRAELRK 108
Query: 143 EGVMKHIVTLKNTLSQVNPSD-AHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDY 201
L + + P D +IDG L + LD+
Sbjct: 109 --------FLLDEAPSMAPLDRVCMIDG---------------------LRIIVLDT--- 136
Query: 202 STVPSVPG--YGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPG---LVYFHIPLPEF 256
SVPG +G I+ SQ W + A PAP L H P+P
Sbjct: 137 ----SVPGHHHGEIRASQLGWLAEELA--------------TPAPDGTILALHHPPIP-- 176
Query: 257 AYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDH 300
+ D + +R + ++ DV+A+ GH H
Sbjct: 177 SVLDMAVTVELRDQAA---------LGRVLRGTDVRAILAGHLH 211
>pdb|3IB7|A Chain A, Crystal Structure Of Full Length Rv0805
pdb|3IB8|A Chain A, Crystal Structure Of Full Length Rv0805 In Complex With
5'-amp
Length = 330
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 104/287 (36%), Gaps = 89/287 (31%)
Query: 29 NAKQERKLRFRQNG--EFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTT--AFINR 84
A E +LR ++ ++ +L ++D H G ++ G D + + +
Sbjct: 9 KAYVEHRLRAAEHPRPDYVLLHISDTHLIGGD---------RRLYGAVDADDRLGELLEQ 59
Query: 85 M-ISAEKPDLIVFTGDNIFGFDATDAA----KSLNAAFAPAIASNIPWVAVLGNHDQEST 139
+ S +PD IVFTGD AA + L FA + + + W V+GNHD +
Sbjct: 60 LNQSGLRPDAIVFTGD--LADKGEPAAYRKLRGLVEPFAAQLGAELVW--VMGNHDDRAE 115
Query: 140 LSREGVMKHIVTLKNTLSQVNPSD-AHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDS 198
L + L + + P D +IDG L + LD+
Sbjct: 116 LRK--------FLLDEAPSMAPLDRVCMIDG---------------------LRIIVLDT 146
Query: 199 GDYSTVPSVPG--YGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPG---LVYFHIPL 253
SVPG +G I+ SQ W + A PAP L H P+
Sbjct: 147 -------SVPGHHHGEIRASQLGWLAEELA--------------TPAPDGTILALHHPPI 185
Query: 254 PEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDH 300
P + D + +R + ++ DV+A+ GH H
Sbjct: 186 P--SVLDMAVTVELRDQAA---------LGRVLRGTDVRAILAGHLH 221
>pdb|2HY1|A Chain A, Crystal Structure Of Rv0805
Length = 280
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 80/224 (35%), Gaps = 75/224 (33%)
Query: 87 SAEKPDLIVFTGDNIFGFDATDAA----KSLNAAFAPAIASNIPWVAVLGNHDQESTLSR 142
S +PD IVFTGD AA + L FA + + + W V+GNHD + L +
Sbjct: 53 SGLRPDAIVFTGD--LADKGEPAAYRKLRGLVEPFAAQLGAELVW--VMGNHDDRAELRK 108
Query: 143 EGVMKHIVTLKNTLSQVNPSD-AHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDY 201
L + + P D +IDG L + LD+
Sbjct: 109 --------FLLDEAPSMAPLDRVCMIDG---------------------LRIIVLDT--- 136
Query: 202 STVPSVPG--YGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPG---LVYFHIPLPEF 256
SVPG +G I+ SQ W + A PAP L H P+P
Sbjct: 137 ----SVPGHHHGEIRASQLGWLAEELA--------------TPAPDGTILALHHPPIP-- 176
Query: 257 AYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDH 300
+ D + +R + ++ DV+A+ GH H
Sbjct: 177 SVLDMAVTVELRDQAA---------LGRVLRGTDVRAILAGHLH 211
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 82 INRMISAEKPDLIVFTGDNIFGFDATDA-----AKSLNAAFAPAIASNIPWVAVLGNHDQ 136
I R + D I+ GDN + DA ++ F+ NIPW + GNHD
Sbjct: 35 IARTVQIMGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRALRNIPWYVLAGNHDH 94
Query: 137 ESTLSRE 143
+S +
Sbjct: 95 LGNVSAQ 101
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 82 INRMISAEKPDLIVFTGDNIFGFDATDA-----AKSLNAAFAPAIASNIPWVAVLGNHDQ 136
I R + D I+ GDN + DA ++ F+ NIPW + GNHD
Sbjct: 56 IARTVQIMGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRALRNIPWYVLAGNHDH 115
Query: 137 ESTLSRE 143
+S +
Sbjct: 116 LGNVSAQ 122
>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate
Length = 313
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 92 DLIVFTGDNIFGFDATDAA-----KSLNAAFAPAIASNIPWVAVLGNHDQESTLSRE 143
D I+ GDN + DA ++ F+ N+PW + GNHD +S +
Sbjct: 45 DFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVSAQ 101
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 63 LDVLPSQVAGCSDLNTTAF--INRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAA 116
+DV+ AG S+ N + ++ KP+L++F GD + G + A+ N A
Sbjct: 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEA 267
>pdb|1HA8|A Chain A, Pheromone Er-23 From Euplotes Raikovi
Length = 51
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 54 FANGKTTPCLDVLPSQVAGCSDLNTTAFINR 84
F NG T PC + L AGCS+ + TAF+++
Sbjct: 17 FNNG-TGPCANCLAGYPAGCSNSDCTAFLSQ 46
>pdb|2O5N|A Chain A, Crystal Structure Of A Viral Glycoprotein
pdb|2O5N|B Chain B, Crystal Structure Of A Viral Glycoprotein
Length = 319
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 178 GGVKGSGFENKSVLNLYFLDSGDYSTVPSVPG-YGWIKPSQQFWFEQTSARLQRAYMSKP 236
G G K+ L++ ++G PG Y W P+ + W E R ++SK
Sbjct: 31 SGATGERISLKNTLSIVSXENG------GKPGTYEWSFPANESWPEIQFLLQNREFVSKY 84
Query: 237 AAQKAPAPG--LVYFHIPLPEF 256
A PG +V + P+P+F
Sbjct: 85 YADVVQTPGELVVEYRCPVPQF 106
>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An
Inhibitory Conformation Of The Repression Loop
Length = 304
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 82 INRMISAEKPDLIVFTGDNIFGFDATDA-----AKSLNAAFAPAIASNIPWVAVLGNHDQ 136
I R + D I+ GDN + D ++ F+ +PW + GNHD
Sbjct: 33 IARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDH 92
Query: 137 ESTLSRE 143
+S +
Sbjct: 93 LGNVSAQ 99
>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In
Pichia Pastoris
Length = 310
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 82 INRMISAEKPDLIVFTGDNIFGFDATDA-----AKSLNAAFAPAIASNIPWVAVLGNHDQ 136
I R + D I+ GDN + D ++ F+ +PW + GNHD
Sbjct: 39 IARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDH 98
Query: 137 ESTLSRE 143
+S +
Sbjct: 99 LGNVSAQ 105
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 63 LDVLPSQVAGCSDLNTTAF--INRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAA 116
+DV+ AG S+ N ++ KP+L++F GD + G + A+ N A
Sbjct: 212 IDVVLIDTAGRSETNRNLXDEXKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEA 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,041,655
Number of Sequences: 62578
Number of extensions: 514602
Number of successful extensions: 1058
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 14
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)