Query 016429
Match_columns 390
No_of_seqs 234 out of 2069
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1432 Predicted DNA repair e 100.0 4.2E-63 9.1E-68 436.5 30.9 332 31-376 41-377 (379)
2 cd07383 MPP_Dcr2 Saccharomyces 100.0 7.6E-31 1.6E-35 229.1 22.3 196 42-325 1-199 (199)
3 cd07395 MPP_CSTP1 Homo sapiens 100.0 2.7E-28 5.9E-33 222.4 25.3 246 41-341 2-253 (262)
4 PRK11148 cyclic 3',5'-adenosin 100.0 5.4E-28 1.2E-32 221.6 27.0 242 40-364 11-265 (275)
5 cd07396 MPP_Nbla03831 Homo sap 100.0 9.4E-27 2E-31 212.3 24.6 235 44-340 1-261 (267)
6 cd07402 MPP_GpdQ Enterobacter 99.9 1.6E-25 3.4E-30 201.7 23.4 210 45-322 1-213 (240)
7 cd00839 MPP_PAPs purple acid p 99.9 2.6E-25 5.6E-30 206.4 22.1 262 41-374 2-293 (294)
8 PLN02533 probable purple acid 99.9 3.8E-23 8.2E-28 199.1 25.1 263 41-378 137-421 (427)
9 cd07399 MPP_YvnB Bacillus subt 99.9 8.2E-23 1.8E-27 179.9 19.3 162 44-304 1-163 (214)
10 cd07378 MPP_ACP5 Homo sapiens 99.9 4.5E-22 9.7E-27 183.1 21.9 239 44-340 1-265 (277)
11 cd07401 MPP_TMEM62_N Homo sapi 99.9 2.3E-22 5E-27 181.9 19.3 201 46-304 2-212 (256)
12 cd00842 MPP_ASMase acid sphing 99.9 4E-21 8.6E-26 178.3 20.0 222 46-308 1-267 (296)
13 KOG1378 Purple acid phosphatas 99.9 7.5E-21 1.6E-25 177.4 20.5 264 40-377 144-439 (452)
14 TIGR03767 P_acnes_RR metalloph 99.9 2.8E-19 6.2E-24 169.0 26.0 134 169-342 290-433 (496)
15 cd07393 MPP_DR1119 Deinococcus 99.8 2.5E-19 5.4E-24 159.9 20.8 214 46-321 1-228 (232)
16 cd08163 MPP_Cdc1 Saccharomyces 99.8 1.8E-19 3.9E-24 162.1 17.9 213 47-309 1-233 (257)
17 PTZ00422 glideosome-associated 99.8 2.2E-18 4.7E-23 160.9 25.2 252 41-340 24-306 (394)
18 TIGR03729 acc_ester putative p 99.8 2.5E-19 5.3E-24 160.9 18.3 213 45-316 1-235 (239)
19 COG1409 Icc Predicted phosphoh 99.8 4E-18 8.7E-23 158.4 21.7 202 44-314 1-206 (301)
20 cd07392 MPP_PAE1087 Pyrobaculu 99.8 3E-18 6.5E-23 148.3 18.5 185 46-314 1-185 (188)
21 KOG2679 Purple (tartrate-resis 99.8 3.1E-18 6.8E-23 147.5 16.6 219 38-320 38-274 (336)
22 cd07388 MPP_Tt1561 Thermus the 99.7 3.2E-15 6.9E-20 131.1 23.8 196 42-319 3-205 (224)
23 cd07400 MPP_YydB Bacillus subt 99.7 7.2E-17 1.6E-21 133.4 12.8 80 46-136 1-80 (144)
24 TIGR03768 RPA4764 metallophosp 99.7 1.3E-15 2.9E-20 142.7 22.2 129 191-342 305-452 (492)
25 PF00149 Metallophos: Calcineu 99.7 9.5E-18 2.1E-22 142.7 6.5 79 44-138 1-79 (200)
26 cd00840 MPP_Mre11_N Mre11 nucl 99.7 9.7E-17 2.1E-21 142.7 12.9 90 45-139 1-91 (223)
27 PRK11340 phosphodiesterase Yae 99.7 4.5E-15 9.8E-20 135.5 22.0 80 42-139 48-127 (271)
28 cd07404 MPP_MS158 Microscilla 99.7 1.7E-16 3.7E-21 134.4 9.3 67 243-317 97-163 (166)
29 TIGR00583 mre11 DNA repair pro 99.6 6.6E-14 1.4E-18 133.1 20.2 89 42-139 2-125 (405)
30 cd07385 MPP_YkuE_C Bacillus su 99.6 1.5E-14 3.4E-19 128.6 14.4 80 43-141 1-80 (223)
31 PRK10966 exonuclease subunit S 99.6 1.5E-13 3.3E-18 131.7 19.4 86 44-138 1-88 (407)
32 KOG3770 Acid sphingomyelinase 99.6 2.6E-13 5.6E-18 130.4 20.4 294 37-379 132-477 (577)
33 COG2129 Predicted phosphoester 99.5 6.9E-12 1.5E-16 107.0 22.9 211 42-339 2-215 (226)
34 PHA02546 47 endonuclease subun 99.5 6.4E-13 1.4E-17 125.1 18.3 85 44-137 1-89 (340)
35 TIGR00619 sbcd exonuclease Sbc 99.5 1.3E-12 2.7E-17 118.0 18.0 86 44-138 1-89 (253)
36 cd08165 MPP_MPPE1 human MPPE1 99.5 5.7E-13 1.2E-17 111.1 13.3 84 47-136 1-88 (156)
37 COG0420 SbcD DNA repair exonuc 99.5 9.4E-13 2E-17 126.9 15.3 88 44-140 1-91 (390)
38 PF14582 Metallophos_3: Metall 99.5 1.2E-12 2.6E-17 111.1 12.7 73 44-136 6-101 (255)
39 PF12850 Metallophos_2: Calcin 99.5 1.7E-12 3.8E-17 108.5 13.7 74 243-339 81-154 (156)
40 cd07397 MPP_DevT Myxococcus xa 99.5 2.2E-11 4.7E-16 107.1 21.0 66 44-140 1-66 (238)
41 PRK05340 UDP-2,3-diacylglucosa 99.4 2.7E-12 5.9E-17 115.3 15.4 77 44-137 1-83 (241)
42 TIGR00040 yfcE phosphoesterase 99.4 6.4E-12 1.4E-16 105.4 15.4 55 281-339 97-151 (158)
43 COG1768 Predicted phosphohydro 99.4 3.9E-12 8.4E-17 103.4 11.9 198 44-302 1-199 (230)
44 cd07394 MPP_Vps29 Homo sapiens 99.4 6.3E-11 1.4E-15 101.0 18.4 57 282-339 98-155 (178)
45 cd07379 MPP_239FB Homo sapiens 99.4 1.5E-11 3.2E-16 100.3 13.6 61 45-136 1-62 (135)
46 COG1408 Predicted phosphohydro 99.3 1.3E-11 2.8E-16 112.3 12.4 82 41-142 42-123 (284)
47 cd07384 MPP_Cdc1_like Saccharo 99.3 1.9E-11 4.1E-16 103.5 11.6 91 47-137 1-100 (171)
48 TIGR01854 lipid_A_lpxH UDP-2,3 99.3 2.3E-11 4.9E-16 108.6 12.4 74 47-137 2-81 (231)
49 cd00841 MPP_YfcE Escherichia c 99.3 1E-10 2.3E-15 97.7 15.7 51 285-339 97-147 (155)
50 cd08166 MPP_Cdc1_like_1 unchar 99.3 2.9E-11 6.3E-16 102.9 11.5 87 47-137 1-93 (195)
51 PRK09453 phosphodiesterase; Pr 99.3 1.7E-10 3.6E-15 99.2 15.9 72 44-136 1-75 (182)
52 COG2908 Uncharacterized protei 99.3 1.4E-11 3E-16 106.3 7.3 73 47-136 1-79 (237)
53 cd07406 MPP_CG11883_N Drosophi 99.2 6.6E-10 1.4E-14 100.8 17.9 217 44-318 1-222 (257)
54 cd07398 MPP_YbbF-LpxH Escheric 99.2 1.2E-10 2.5E-15 103.2 10.7 77 47-137 1-82 (217)
55 cd00838 MPP_superfamily metall 99.2 4.2E-10 9.1E-15 90.4 11.7 69 47-135 1-69 (131)
56 cd07403 MPP_TTHA0053 Thermus t 99.2 5.1E-10 1.1E-14 90.3 11.8 37 88-135 20-56 (129)
57 cd07410 MPP_CpdB_N Escherichia 99.1 1.7E-08 3.8E-13 92.7 21.0 231 44-317 1-245 (277)
58 cd00845 MPP_UshA_N_like Escher 99.1 2E-08 4.3E-13 91.0 20.6 95 44-153 1-96 (252)
59 cd07412 MPP_YhcR_N Bacillus su 99.0 8.9E-08 1.9E-12 88.3 22.9 97 44-149 1-98 (288)
60 cd07411 MPP_SoxB_N Thermus the 99.0 1.1E-07 2.4E-12 86.6 22.1 226 44-317 1-236 (264)
61 COG0622 Predicted phosphoester 99.0 1.9E-08 4.2E-13 84.4 15.0 56 280-339 99-154 (172)
62 PRK09418 bifunctional 2',3'-cy 98.9 3.2E-07 6.8E-12 94.4 24.7 255 42-341 38-317 (780)
63 PRK09558 ushA bifunctional UDP 98.9 1.7E-08 3.7E-13 101.6 15.2 96 41-150 32-132 (551)
64 PRK09419 bifunctional 2',3'-cy 98.9 7.7E-08 1.7E-12 104.7 21.0 104 42-152 40-152 (1163)
65 PF09423 PhoD: PhoD-like phosp 98.9 3E-08 6.4E-13 97.6 16.1 213 42-302 104-377 (453)
66 cd07408 MPP_SA0022_N Staphyloc 98.9 1.2E-07 2.7E-12 86.0 18.7 96 44-153 1-96 (257)
67 KOG3662 Cell division control 98.9 2.6E-08 5.7E-13 93.1 13.2 96 41-139 46-146 (410)
68 cd07409 MPP_CD73_N CD73 ecto-5 98.9 1.1E-06 2.4E-11 80.8 23.4 210 44-302 1-218 (281)
69 cd07391 MPP_PF1019 Pyrococcus 98.9 3.4E-09 7.5E-14 90.1 6.3 86 47-137 1-88 (172)
70 KOG2310 DNA repair exonuclease 98.8 1.7E-07 3.7E-12 89.0 15.0 92 41-142 11-138 (646)
71 PRK09419 bifunctional 2',3'-cy 98.7 8.3E-07 1.8E-11 96.8 20.5 218 42-317 659-896 (1163)
72 TIGR00024 SbcD_rel_arch putati 98.7 4.7E-08 1E-12 86.3 6.7 85 45-136 16-101 (225)
73 COG4186 Predicted phosphoester 98.6 8.4E-07 1.8E-11 71.0 12.7 80 45-137 5-86 (186)
74 cd07407 MPP_YHR202W_N Saccharo 98.6 2.2E-06 4.8E-11 78.5 17.3 93 42-139 4-99 (282)
75 PRK04036 DNA polymerase II sma 98.6 1.4E-07 3E-12 93.3 9.9 84 39-138 239-344 (504)
76 PRK09420 cpdB bifunctional 2', 98.6 1.3E-05 2.8E-10 81.9 23.4 105 41-152 23-135 (649)
77 COG0737 UshA 5'-nucleotidase/2 98.6 1.6E-06 3.5E-11 86.7 16.6 232 39-317 22-266 (517)
78 cd07386 MPP_DNA_pol_II_small_a 98.6 1.5E-07 3.3E-12 84.7 7.6 76 47-138 2-95 (243)
79 cd07405 MPP_UshA_N Escherichia 98.5 1.5E-05 3.2E-10 73.4 20.2 93 44-150 1-98 (285)
80 PRK11907 bifunctional 2',3'-cy 98.5 2.4E-05 5.2E-10 81.0 21.8 225 42-301 114-353 (814)
81 TIGR01530 nadN NAD pyrophospha 98.5 1.5E-05 3.3E-10 80.1 19.4 211 44-302 1-218 (550)
82 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.5 3.3E-05 7.1E-10 69.8 19.5 61 243-305 165-230 (262)
83 cd07390 MPP_AQ1575 Aquifex aeo 98.4 9.2E-07 2E-11 74.8 7.0 78 47-137 2-82 (168)
84 cd08162 MPP_PhoA_N Synechococc 98.3 0.00016 3.5E-09 67.4 21.4 91 44-151 1-103 (313)
85 PHA02239 putative protein phos 98.3 2.3E-06 5E-11 76.1 8.5 70 44-136 1-72 (235)
86 cd07382 MPP_DR1281 Deinococcus 98.3 9.8E-05 2.1E-09 66.4 18.9 81 45-152 1-81 (255)
87 TIGR01390 CycNucDiestase 2',3' 98.3 9.8E-05 2.1E-09 75.3 19.8 104 43-153 2-113 (626)
88 COG1407 Predicted ICC-like pho 98.2 2.7E-06 5.8E-11 74.2 7.0 89 44-138 20-111 (235)
89 COG3540 PhoD Phosphodiesterase 98.2 2.5E-05 5.4E-10 73.9 13.6 215 82-326 160-451 (522)
90 PRK00166 apaH diadenosine tetr 98.2 4.3E-06 9.4E-11 76.0 7.5 67 44-136 1-68 (275)
91 cd08164 MPP_Ted1 Saccharomyces 98.2 9.3E-06 2E-10 69.3 8.5 58 80-138 34-112 (193)
92 cd07425 MPP_Shelphs Shewanella 98.0 1.6E-05 3.5E-10 69.6 7.7 48 89-136 31-79 (208)
93 TIGR00282 metallophosphoestera 98.0 0.00071 1.5E-08 61.1 18.2 71 44-139 1-73 (266)
94 cd07424 MPP_PrpA_PrpB PrpA and 98.0 1.7E-05 3.7E-10 69.5 7.1 64 45-136 2-66 (207)
95 cd07423 MPP_PrpE Bacillus subt 97.9 4.3E-05 9.3E-10 68.3 7.7 42 91-136 38-79 (234)
96 COG5555 Cytolysin, a secreted 97.8 0.00014 3E-09 64.2 9.3 75 217-302 254-334 (392)
97 PRK11439 pphA serine/threonine 97.8 6.7E-05 1.4E-09 66.3 6.7 71 38-136 11-82 (218)
98 PRK09968 serine/threonine-spec 97.7 0.00011 2.4E-09 64.8 7.7 71 38-136 9-80 (218)
99 cd07422 MPP_ApaH Escherichia c 97.7 0.0001 2.2E-09 66.4 6.9 42 89-136 25-66 (257)
100 cd07387 MPP_PolD2_C PolD2 (DNA 97.7 0.00015 3.2E-09 65.1 7.6 79 45-139 1-109 (257)
101 TIGR00668 apaH bis(5'-nucleosy 97.6 0.00018 3.8E-09 65.1 7.1 67 44-136 1-68 (279)
102 KOG4419 5' nucleotidase [Nucle 97.6 0.00096 2.1E-08 65.2 12.0 96 35-139 34-136 (602)
103 PRK13625 bis(5'-nucleosyl)-tet 97.6 0.00022 4.8E-09 64.2 7.3 42 91-136 37-78 (245)
104 cd07421 MPP_Rhilphs Rhilph pho 97.6 0.00039 8.4E-09 63.1 8.6 69 45-136 3-79 (304)
105 cd07413 MPP_PA3087 Pseudomonas 97.5 0.00025 5.3E-09 62.8 7.2 43 90-136 33-75 (222)
106 cd00144 MPP_PPP_family phospho 97.5 0.00021 4.5E-09 63.4 6.8 54 80-136 14-67 (225)
107 cd07381 MPP_CapA CapA and rela 97.4 0.018 3.8E-07 51.7 17.8 72 218-316 161-233 (239)
108 COG1311 HYS2 Archaeal DNA poly 97.3 0.00054 1.2E-08 65.4 6.9 82 41-138 223-322 (481)
109 cd07389 MPP_PhoD Bacillus subt 97.2 0.022 4.8E-07 50.5 15.2 53 87-140 26-105 (228)
110 smart00854 PGA_cap Bacterial c 97.1 0.015 3.3E-07 52.0 13.9 59 241-316 172-231 (239)
111 cd07418 MPP_PP7 PP7, metalloph 96.8 0.0027 5.8E-08 60.1 6.5 24 276-299 270-293 (377)
112 PF04042 DNA_pol_E_B: DNA poly 96.6 0.0054 1.2E-07 53.7 6.6 75 46-139 1-93 (209)
113 smart00156 PP2Ac Protein phosp 96.4 0.013 2.9E-07 53.4 7.9 25 277-301 198-222 (271)
114 KOG3947 Phosphoesterases [Gene 96.3 0.077 1.7E-06 47.2 11.6 69 41-139 59-128 (305)
115 PF13277 YmdB: YmdB-like prote 96.3 0.29 6.2E-06 43.5 15.0 162 80-305 17-179 (253)
116 cd07416 MPP_PP2B PP2B, metallo 96.2 0.021 4.5E-07 53.0 8.1 25 277-301 220-244 (305)
117 cd07420 MPP_RdgC Drosophila me 95.9 0.036 7.8E-07 51.6 8.0 26 276-301 250-275 (321)
118 PTZ00235 DNA polymerase epsilo 95.7 0.078 1.7E-06 48.1 9.3 81 39-138 23-123 (291)
119 cd07414 MPP_PP1_PPKL PP1, PPKL 95.7 0.03 6.6E-07 51.6 6.9 59 277-340 220-280 (293)
120 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.7 0.037 8E-07 50.8 7.3 60 277-340 212-272 (285)
121 KOG2863 RNA lariat debranching 95.5 0.13 2.8E-06 47.5 10.0 29 277-306 205-233 (456)
122 PTZ00480 serine/threonine-prot 95.5 0.038 8.3E-07 51.4 6.7 26 277-302 229-254 (320)
123 PF09587 PGA_cap: Bacterial ca 95.5 0.78 1.7E-05 41.3 15.0 74 216-316 168-242 (250)
124 PTZ00239 serine/threonine prot 95.2 0.071 1.5E-06 49.3 7.3 26 277-302 213-238 (303)
125 PTZ00244 serine/threonine-prot 95.1 0.057 1.2E-06 49.8 6.3 60 277-340 222-282 (294)
126 cd07417 MPP_PP5_C PP5, C-termi 95.0 0.1 2.2E-06 48.7 7.9 59 277-340 231-291 (316)
127 COG1692 Calcineurin-like phosp 94.8 0.48 1E-05 41.7 10.8 106 44-179 1-107 (266)
128 cd07380 MPP_CWF19_N Schizosacc 94.4 0.1 2.3E-06 42.9 5.6 44 89-135 25-68 (150)
129 cd07419 MPP_Bsu1_C Arabidopsis 94.2 0.2 4.2E-06 46.8 7.8 59 277-340 240-300 (311)
130 KOG3325 Membrane coat complex 93.4 0.66 1.4E-05 37.4 8.1 72 280-364 97-172 (183)
131 KOG3818 DNA polymerase epsilon 86.4 5 0.00011 38.5 8.9 80 41-139 280-371 (525)
132 cd08164 MPP_Ted1 Saccharomyces 81.1 2.7 5.8E-05 36.1 4.5 12 290-301 144-155 (193)
133 PF07172 GRP: Glycine rich pro 80.1 0.72 1.6E-05 34.6 0.7 22 10-31 6-27 (95)
134 COG2875 CobM Precorrin-4 methy 79.3 6.6 0.00014 34.5 6.2 48 79-133 65-112 (254)
135 PRK09967 putative outer membra 78.1 9.9 0.00021 31.6 6.9 55 41-106 43-97 (160)
136 PF06874 FBPase_2: Firmicute f 75.8 2.7 5.9E-05 42.2 3.4 54 77-137 171-224 (640)
137 PF02350 Epimerase_2: UDP-N-ac 72.9 7.7 0.00017 36.8 5.6 45 78-132 55-99 (346)
138 COG0381 WecB UDP-N-acetylgluco 67.7 13 0.00029 35.3 5.8 51 77-137 79-130 (383)
139 cd04502 SGNH_hydrolase_like_7 66.5 32 0.00069 28.4 7.6 53 78-130 38-95 (171)
140 PRK09968 serine/threonine-spec 65.9 6.7 0.00015 34.5 3.4 31 290-322 179-209 (218)
141 cd07380 MPP_CWF19_N Schizosacc 62.6 13 0.00029 30.5 4.3 52 244-301 70-121 (150)
142 TIGR03568 NeuC_NnaA UDP-N-acet 60.8 24 0.00052 33.7 6.4 49 78-136 81-130 (365)
143 cd01828 sialate_O-acetylestera 55.4 53 0.0011 27.0 7.0 50 80-130 39-93 (169)
144 COG2248 Predicted hydrolase (m 54.4 22 0.00048 31.8 4.4 40 40-101 173-212 (304)
145 cd07425 MPP_Shelphs Shewanella 54.1 18 0.0004 31.4 4.0 23 281-303 158-180 (208)
146 cd07424 MPP_PrpA_PrpB PrpA and 53.4 15 0.00033 31.8 3.4 28 290-318 168-195 (207)
147 COG2047 Uncharacterized protei 52.3 35 0.00077 29.8 5.2 45 89-134 82-126 (258)
148 COG3855 Fbp Uncharacterized pr 51.6 16 0.00035 35.3 3.4 52 80-138 180-231 (648)
149 PRK09738 small toxic polypepti 51.4 35 0.00076 22.4 3.9 38 2-41 1-38 (52)
150 TIGR03413 GSH_gloB hydroxyacyl 51.3 25 0.00055 31.5 4.6 43 93-136 120-166 (248)
151 PF14639 YqgF: Holliday-juncti 50.3 41 0.00088 27.6 5.2 58 76-136 49-108 (150)
152 KOG4184 Predicted sugar kinase 49.8 33 0.00071 32.2 4.9 52 76-127 224-278 (478)
153 KOG0374 Serine/threonine speci 49.6 25 0.00054 33.0 4.3 60 277-340 231-291 (331)
154 TIGR02855 spore_yabG sporulati 48.0 17 0.00037 32.8 2.8 26 74-99 137-162 (283)
155 TIGR01319 glmL_fam conserved h 47.8 40 0.00087 33.1 5.5 50 84-137 114-163 (463)
156 PRK13254 cytochrome c-type bio 47.8 8.8 0.00019 31.4 0.9 16 1-16 1-16 (148)
157 COG2247 LytB Putative cell wal 46.2 99 0.0021 28.7 7.4 49 80-137 65-113 (337)
158 PF05582 Peptidase_U57: YabG p 46.1 21 0.00045 32.4 3.1 26 74-99 138-163 (287)
159 COG2949 SanA Uncharacterized m 45.6 1.1E+02 0.0024 26.5 7.1 41 81-126 84-124 (235)
160 cd04501 SGNH_hydrolase_like_4 44.7 1E+02 0.0023 25.5 7.2 10 44-53 1-10 (183)
161 COG1646 Predicted phosphate-bi 44.3 75 0.0016 28.1 6.1 51 80-136 31-82 (240)
162 COG1358 RPL8A Ribosomal protei 43.2 1E+02 0.0022 24.1 6.1 49 80-135 33-81 (116)
163 PRK11627 hypothetical protein; 42.3 15 0.00033 31.5 1.6 29 1-40 1-29 (192)
164 PRK11917 bifunctional adhesin/ 41.7 9.8 0.00021 34.3 0.3 43 8-51 5-47 (259)
165 PF03437 BtpA: BtpA family; I 41.2 1.3E+02 0.0028 27.2 7.3 78 46-149 141-218 (254)
166 cd01829 SGNH_hydrolase_peri2 S 41.2 1E+02 0.0022 26.0 6.8 18 80-97 49-66 (200)
167 PF12393 Dr_adhesin: Dr family 41.1 30 0.00064 17.9 1.9 16 13-28 4-19 (21)
168 PRK10241 hydroxyacylglutathion 40.6 41 0.0009 30.2 4.2 43 94-137 122-168 (251)
169 PRK13600 putative ribosomal pr 40.3 1.3E+02 0.0028 22.0 6.0 43 81-131 20-62 (84)
170 PF00582 Usp: Universal stress 39.7 1.1E+02 0.0023 23.4 6.2 51 78-131 90-140 (140)
171 PF03100 CcmE: CcmE; InterPro 39.5 9.8 0.00021 30.5 0.0 18 2-19 1-18 (131)
172 cd01822 Lysophospholipase_L1_l 39.4 1.4E+02 0.003 24.4 7.2 7 45-51 2-8 (177)
173 PRK15222 putative pilin struct 39.2 15 0.00033 29.9 1.0 15 124-138 80-95 (156)
174 TIGR01769 GGGP geranylgeranylg 39.0 1.1E+02 0.0024 26.5 6.5 51 80-136 14-65 (205)
175 cd02067 B12-binding B12 bindin 39.0 1.4E+02 0.0029 23.0 6.5 51 80-136 40-92 (119)
176 KOG2476 Uncharacterized conser 38.7 82 0.0018 30.8 5.9 52 80-134 23-75 (528)
177 TIGR02184 Myco_arth_vir_N Myco 38.4 20 0.00044 20.9 1.2 21 2-22 1-21 (33)
178 cd01836 FeeA_FeeB_like SGNH_hy 37.5 1.1E+02 0.0024 25.6 6.3 42 88-129 65-111 (191)
179 cd07423 MPP_PrpE Bacillus subt 37.1 52 0.0011 29.1 4.3 31 290-322 181-211 (234)
180 PF13941 MutL: MutL protein 35.8 87 0.0019 30.9 5.8 50 84-137 118-167 (457)
181 PRK13861 type IV secretion sys 34.8 37 0.00081 31.3 3.0 10 290-299 186-195 (292)
182 COG0434 SgcQ Predicted TIM-bar 34.6 1.7E+02 0.0036 26.1 6.7 70 44-132 144-213 (263)
183 COG3017 LolB Outer membrane li 34.5 50 0.0011 28.5 3.4 14 42-55 54-67 (206)
184 KOG3325 Membrane coat complex 34.2 1.6E+02 0.0035 24.1 6.0 66 44-137 1-66 (183)
185 TIGR01768 GGGP-family geranylg 34.2 1.3E+02 0.0028 26.6 6.1 48 82-136 19-67 (223)
186 PTZ00365 60S ribosomal protein 33.7 1.4E+02 0.003 26.9 6.2 50 80-136 138-187 (266)
187 PRK10528 multifunctional acyl- 33.6 2E+02 0.0044 24.2 7.3 17 38-54 5-21 (191)
188 PRK11439 pphA serine/threonine 32.4 49 0.0011 28.9 3.3 54 90-151 15-70 (218)
189 PF09610 Myco_arth_vir_N: Myco 32.1 37 0.0008 19.7 1.5 21 2-22 1-21 (33)
190 PF13258 DUF4049: Domain of un 31.2 78 0.0017 28.0 4.1 17 124-140 127-143 (318)
191 PF02421 FeoB_N: Ferrous iron 31.1 1.4E+02 0.0031 24.6 5.6 49 80-135 68-116 (156)
192 PF00072 Response_reg: Respons 30.9 1.8E+02 0.0039 21.4 6.0 51 80-136 33-83 (112)
193 PRK10903 peptidyl-prolyl cis-t 30.4 1.8E+02 0.004 24.8 6.4 23 78-100 52-84 (190)
194 KOG0372 Serine/threonine speci 30.1 74 0.0016 28.4 3.8 45 92-138 71-115 (303)
195 cd00758 MoCF_BD MoCF_BD: molyb 30.0 1E+02 0.0022 24.5 4.5 11 90-100 58-68 (133)
196 PRK04081 hypothetical protein; 29.8 67 0.0015 27.5 3.4 21 2-22 1-21 (207)
197 cd07386 MPP_DNA_pol_II_small_a 29.4 42 0.00092 29.8 2.4 28 290-318 191-218 (243)
198 PRK04169 geranylgeranylglycery 29.2 1.4E+02 0.0029 26.6 5.5 46 84-136 26-72 (232)
199 PRK10116 universal stress prot 28.9 2.3E+02 0.0051 22.1 6.6 9 42-50 32-40 (142)
200 TIGR00236 wecB UDP-N-acetylglu 28.5 1.6E+02 0.0034 27.8 6.3 44 78-131 74-117 (365)
201 TIGR01012 Sa_S2_E_A ribosomal 28.0 88 0.0019 27.0 3.9 38 89-137 107-158 (196)
202 KOG0373 Serine/threonine speci 27.5 96 0.0021 27.1 4.0 43 93-137 75-117 (306)
203 cd01833 XynB_like SGNH_hydrola 27.0 1.9E+02 0.0041 23.2 5.8 52 79-130 29-85 (157)
204 PTZ00222 60S ribosomal protein 26.6 2.1E+02 0.0046 25.7 6.1 50 80-136 138-187 (263)
205 PF08497 Radical_SAM_N: Radica 25.9 1.3E+02 0.0028 27.6 4.7 17 89-105 15-31 (302)
206 cd03786 GT1_UDP-GlcNAc_2-Epime 25.4 2.2E+02 0.0047 26.6 6.7 45 79-133 77-121 (363)
207 PRK15473 cbiF cobalt-precorrin 25.3 1.8E+02 0.0038 26.2 5.7 46 80-132 71-116 (257)
208 COG2086 FixA Electron transfer 25.0 2.3E+02 0.0051 25.6 6.3 24 78-102 99-122 (260)
209 COG0505 CarA Carbamoylphosphat 24.9 1.2E+02 0.0027 28.6 4.5 39 88-133 218-260 (368)
210 PF07981 Plasmod_MYXSPDY: Plas 24.3 64 0.0014 15.5 1.3 15 38-52 3-17 (17)
211 KOG0781 Signal recognition par 24.0 1.3E+02 0.0027 29.9 4.5 43 75-117 481-523 (587)
212 cd01841 NnaC_like NnaC (CMP-Ne 23.4 3.9E+02 0.0085 21.7 7.2 51 79-129 40-95 (174)
213 PF01248 Ribosomal_L7Ae: Ribos 23.3 2.4E+02 0.0053 20.6 5.3 45 80-131 21-65 (95)
214 PF13727 CoA_binding_3: CoA-bi 23.2 1.3E+02 0.0028 24.5 4.2 47 78-131 129-175 (175)
215 PRK13195 pyrrolidone-carboxyla 23.2 90 0.0019 27.5 3.2 22 78-99 49-70 (222)
216 PTZ00486 apyrase Superfamily; 22.4 1.2E+02 0.0026 28.6 3.9 15 43-57 55-69 (352)
217 PRK10523 lipoprotein involved 22.4 71 0.0015 28.4 2.4 10 241-250 190-199 (234)
218 TIGR00162 conserved hypothetic 21.9 2.6E+02 0.0055 23.9 5.7 43 90-133 14-56 (188)
219 PRK00994 F420-dependent methyl 21.9 3.8E+02 0.0082 23.9 6.6 45 80-131 50-94 (277)
220 PF01884 PcrB: PcrB family; I 21.7 3.3E+02 0.0072 24.2 6.4 50 80-136 22-71 (230)
221 PF06925 MGDG_synth: Monogalac 21.5 95 0.0021 25.7 3.0 21 78-98 77-97 (169)
222 PHA03008 hypothetical protein; 21.4 1.2E+02 0.0026 26.1 3.3 42 244-301 162-203 (234)
223 PF04392 ABC_sub_bind: ABC tra 21.4 1.6E+02 0.0035 26.9 4.8 25 75-99 44-68 (294)
224 KOG0371 Serine/threonine prote 21.3 1E+02 0.0022 27.8 3.1 46 89-136 84-130 (319)
225 TIGR00259 thylakoid_BtpA membr 21.2 4.6E+02 0.01 23.7 7.4 70 45-132 139-208 (257)
226 COG2039 Pcp Pyrrolidone-carbox 21.2 1.1E+02 0.0024 26.2 3.1 25 75-99 45-69 (207)
227 cd02071 MM_CoA_mut_B12_BD meth 21.1 4E+02 0.0086 20.6 6.9 20 80-99 40-59 (122)
228 PF05643 DUF799: Putative bact 20.9 1.2E+02 0.0025 26.6 3.4 27 24-50 14-42 (215)
229 PF15240 Pro-rich: Proline-ric 20.7 62 0.0013 27.3 1.6 10 16-25 5-14 (179)
230 TIGR01098 3A0109s03R phosphate 20.4 94 0.002 27.4 2.9 14 40-53 30-43 (254)
No 1
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=100.00 E-value=4.2e-63 Score=436.48 Aligned_cols=332 Identities=59% Similarity=1.021 Sum_probs=298.1
Q ss_pred cCCcceeccCCCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHH
Q 016429 31 KQERKLRFRQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAA 110 (390)
Q Consensus 31 ~~~~~~~~~~~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~ 110 (390)
....+++++.+|+|||+|+||+|++.+...+|.|+.|.+..+|.|.++..++.++|+.|+|||||+|||+|++....++.
T Consensus 41 ~~~~~lr~~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~ 120 (379)
T KOG1432|consen 41 NGRLKLRFREDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAA 120 (379)
T ss_pred CcceeeeecCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHH
Confidence 33557999999999999999999999988899999999988999999999999999999999999999999998888999
Q ss_pred HHHHHHHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCcc--ccCccceeEEeccCCCCCCCCc
Q 016429 111 KSLNAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHI--IDGFGNYNLEIGGVKGSGFENK 188 (390)
Q Consensus 111 ~~~~~~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~~y~~~~~~~~~~~~~~~ 188 (390)
..+.++++|+++.+|||.+++||||....+++++++++...+|+++..++|.+... +.|++||.+.+.+..++.....
T Consensus 121 ~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~ 200 (379)
T KOG1432|consen 121 TSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENK 200 (379)
T ss_pred HHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhcCCCccccCCCcccceeeeecccceEEEeccCCCcccccC
Confidence 99999999999999999999999999999999999999999999999998876543 5789999999998877776666
Q ss_pred ceEEEEEEeCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCC-ccc
Q 016429 189 SVLNLYFLDSGDYSTVP-SVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSN-FTG 266 (390)
Q Consensus 189 ~~~~l~~lds~~~~~~~-~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~-~~g 266 (390)
+...+++||++.|+..+ ...+|+||..+|++||+....+.+.. .. ...+.+.++|.|+|++++...+.++ +.|
T Consensus 201 sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~-~~----~~~P~p~La~~HIP~~E~~~~~~~tp~~g 275 (379)
T KOG1432|consen 201 SVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEP-NS----KYNPQPGLAFFHIPLPEFLELESKTPLIG 275 (379)
T ss_pred ceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcc-cC----ccCCCCceEEEEcccHHHhhccCCCcccc
Confidence 77899999999998876 55689999999999999987542211 00 0133489999999999998888644 678
Q ss_pred ccCCCCCCCCCChHHHHHHHHcCCeeEEEeccCCCCCcccccCC-eEEEecCCCCCCCCCCCCCCceeEEEEEecccccc
Q 016429 267 VRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTG-IQLCYGGGFGYHAYGKAGWERRARVVVASLEKTEK 345 (390)
Q Consensus 267 ~~~e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~g-i~~~~~~~~g~~~~~~~~~~~g~rv~ei~~~~~~~ 345 (390)
.++|++.++..+++++..|.+..+|++|+|||+|.||+|..+.| +|+||+|+.||++||..+|.|++||+|++..+
T Consensus 276 ~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGyggYg~~gw~Rr~Rv~e~d~~~--- 352 (379)
T KOG1432|consen 276 VFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYGGYGIGGWERRARVFELDLNK--- 352 (379)
T ss_pred eeeccccccccccHHHHHHHhccCcceEEeccccccceecccCCeEEEEecCCCccCCcCcCCcccceEEEEccccc---
Confidence 99999999999999999999999999999999999999999999 99999999999999988899999999999654
Q ss_pred cCCCCcCceEEEEEccCCCCCcccceeEeec
Q 016429 346 RGWGDVKSIKTWKRLDDEHLTGVDGHVLWSK 376 (390)
Q Consensus 346 ~~~~~~~~~~tw~r~~~~~~~~~d~~~l~~~ 376 (390)
..|+||||++++...++|+|++|+.
T Consensus 353 ------~~IkTWKRl~d~~~~~~D~q~l~d~ 377 (379)
T KOG1432|consen 353 ------DRIKTWKRLDDKPLSVIDYQLLYDG 377 (379)
T ss_pred ------cccceeeecCCCCcceeeeEEEecc
Confidence 5799999999999999999999985
No 2
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.98 E-value=7.6e-31 Score=229.14 Aligned_cols=196 Identities=51% Similarity=0.948 Sum_probs=157.2
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhh-HHHHHHHHHhHh
Q 016429 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATD-AAKSLNAAFAPA 120 (390)
Q Consensus 42 ~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~-~~~~~~~~l~~~ 120 (390)
++|||+||||+|++...... .....+..+.+.+.++++..+||+||++||++.+..... .+..+.++++++
T Consensus 1 ~~~ki~~isDlH~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l 72 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTC--------EGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPM 72 (199)
T ss_pred CceEEEEEeeecccCCCCCC--------CcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHH
Confidence 47999999999998764321 001134567788888899999999999999766554432 567777788877
Q ss_pred HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeCCC
Q 016429 121 IASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGD 200 (390)
Q Consensus 121 ~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~~ 200 (390)
...++|+++++||||.
T Consensus 73 ~~~~~p~~~~~GNHD~---------------------------------------------------------------- 88 (199)
T cd07383 73 IDRKIPWAATFGNHDG---------------------------------------------------------------- 88 (199)
T ss_pred HHcCCCEEEECccCCC----------------------------------------------------------------
Confidence 7779999999999990
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccC--CCcccccCCCCCCCCCC
Q 016429 201 YSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQ--SNFTGVRQEGISSASVN 278 (390)
Q Consensus 201 ~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~--~~~~g~~~e~~~~~~~~ 278 (390)
+|++.++|++||++++.++... .....+.++|+|||+.+....|. ..+.|.+.+...+...+
T Consensus 89 ---------~g~l~~~ql~wL~~~l~~~~~~-------~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~ 152 (199)
T cd07383 89 ---------YDWIRPSQIEWFKETSAALKKK-------YGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKIN 152 (199)
T ss_pred ---------CCCCCHHHHHHHHHHHHHHhhc-------cCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCC
Confidence 3457889999999999887531 02457899999999998877775 55667777766667778
Q ss_pred hHHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecCCCCCCCCC
Q 016429 279 SGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYG 325 (390)
Q Consensus 279 ~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~~~ 325 (390)
.++++.+.+.++|+++||||+|.++++...+++++|+++.+|+++||
T Consensus 153 ~~~~~~~~~~~~v~~v~~GH~H~~~~~~~~~~i~l~~g~~~g~~~y~ 199 (199)
T cd07383 153 SGLFKALLERGDVKGVFCGHDHGNDFCGRYNGIWLCYGRGTGYGGYG 199 (199)
T ss_pred cHHHHHHHHcCCeEEEEeCCCCCcceecccCCEEEeCCCCCCCCCCC
Confidence 89999999999999999999999999999999999999999999885
No 3
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.97 E-value=2.7e-28 Score=222.39 Aligned_cols=246 Identities=21% Similarity=0.264 Sum_probs=156.8
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc--CCCEEEEcCCcCCCCChhh----HHHHHH
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE--KPDLIVFTGDNIFGFDATD----AAKSLN 114 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~pD~Vv~~GD~i~~~~~~~----~~~~~~ 114 (390)
+++|+|+++||+|++........+ ...+ ......++.+.+.+++. +||+||++||++.+..... .++.+.
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~ 77 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGG--GDEW--DEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLK 77 (262)
T ss_pred CCCEEEEEecCCccchhhccccCc--hhhh--hhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHH
Confidence 578999999999999643211000 0000 01223445555666655 9999999999665543321 123334
Q ss_pred HHHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEE
Q 016429 115 AAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLY 194 (390)
Q Consensus 115 ~~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~ 194 (390)
+.++.+ ..++|+++++||||.......+.+..+... + +..+|++...+ ++++
T Consensus 78 ~~~~~~-~~~vp~~~i~GNHD~~~~~~~~~~~~f~~~-------~---------g~~~y~~~~~~-----------~~~i 129 (262)
T cd07395 78 DVLSLL-DPDIPLVCVCGNHDVGNTPTEESIKDYRDV-------F---------GDDYFSFWVGG-----------VFFI 129 (262)
T ss_pred HHHhhc-cCCCcEEEeCCCCCCCCCCChhHHHHHHHH-------h---------CCcceEEEECC-----------EEEE
Confidence 444432 247999999999999654443333333221 1 12356666655 8999
Q ss_pred EEeCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCC
Q 016429 195 FLDSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISS 274 (390)
Q Consensus 195 ~lds~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~ 274 (390)
+|||..+... .+.+.+..+|++||+++|++.++ ...+++|+|+|||++....... ......
T Consensus 130 ~lds~~~~~~---~~~~~~~~~ql~WL~~~L~~~~~---------~~~~~~iv~~H~P~~~~~~~~~-------~~~~~~ 190 (262)
T cd07395 130 VLNSQLFFDP---SEVPELAQAQDVWLEEQLEIAKE---------SDCKHVIVFQHIPWFLEDPDEE-------DSYFNI 190 (262)
T ss_pred EeccccccCc---cccccchHHHHHHHHHHHHHHHh---------ccCCcEEEEECcCCccCCCCCC-------cccCCc
Confidence 9999754321 12456889999999999987653 2567899999999964221110 001111
Q ss_pred CCCChHHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecCCCCCCCCCCCCCCceeEEEEEecc
Q 016429 275 ASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVVVASLE 341 (390)
Q Consensus 275 ~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~~~~~~~~~g~rv~ei~~~ 341 (390)
...+...+..+++.++|+++||||+|.+.. ..+.|+..+.++++|+.. +. ..+|||+++|+.+
T Consensus 191 ~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~-~~~~g~~~~~~~~~~~~~-~~--~~~g~~~~~v~~~ 253 (262)
T cd07395 191 PKSVRKPLLDKFKKAGVKAVFSGHYHRNAG-GRYGGLEMVVTSAIGAQL-GN--DKSGLRIVKVTED 253 (262)
T ss_pred CHHHHHHHHHHHHhcCceEEEECccccCCc-eEECCEEEEEcCceeccc-CC--CCCCcEEEEECCC
Confidence 223456677788878899999999999665 567899888888887532 32 4689999999843
No 4
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.97 E-value=5.4e-28 Score=221.60 Aligned_cols=242 Identities=24% Similarity=0.250 Sum_probs=151.0
Q ss_pred CCCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHH---HHHHHh--cCCCEEEEcCCcCCCCChhhHHHHHH
Q 016429 40 QNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFI---NRMISA--EKPDLIVFTGDNIFGFDATDAAKSLN 114 (390)
Q Consensus 40 ~~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~i~~--~~pD~Vv~~GD~i~~~~~~~~~~~~~ 114 (390)
+.++|||+||||+|+........ .+.++.+.+ .+.+++ .+||+||++||+ .+.+..+.++.+.
T Consensus 11 ~~~~~~i~~iSD~Hl~~~~~~~~-----------~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl-~~~~~~~~~~~~~ 78 (275)
T PRK11148 11 GEARVRILQITDTHLFADEHETL-----------LGVNTWESYQAVLEAIRAQQHEFDLIVATGDL-AQDHSSEAYQHFA 78 (275)
T ss_pred CCCCEEEEEEcCcccCCCCCCce-----------eccCHHHHHHHHHHHHHhhCCCCCEEEECCCC-CCCCCHHHHHHHH
Confidence 34779999999999854321110 112233334 444433 379999999995 5555555555555
Q ss_pred HHHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEE
Q 016429 115 AAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLY 194 (390)
Q Consensus 115 ~~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~ 194 (390)
+.++ +.++|++++|||||... .+.+.+... .+.+ .++.+. .+ .++++
T Consensus 79 ~~l~---~l~~Pv~~v~GNHD~~~-----~~~~~~~~~-----~~~~---------~~~~~~-~~----------~~~~i 125 (275)
T PRK11148 79 EGIA---PLRKPCVWLPGNHDFQP-----AMYSALQDA-----GISP---------AKHVLI-GE----------HWQIL 125 (275)
T ss_pred HHHh---hcCCcEEEeCCCCCChH-----HHHHHHhhc-----CCCc---------cceEEe-cC----------CEEEE
Confidence 5554 45799999999999832 122222110 0100 111111 11 27899
Q ss_pred EEeCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEec-ChhhhhhccCCCcccccCCCCC
Q 016429 195 FLDSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHI-PLPEFAYFDQSNFTGVRQEGIS 273 (390)
Q Consensus 195 ~lds~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~-P~~~~~~~~~~~~~g~~~e~~~ 273 (390)
+|||..+ +. ..|+++++|++||+++|++. +.++.++|+|| |++. ...+ .+..
T Consensus 126 ~Lds~~~----g~-~~G~l~~~ql~wL~~~L~~~------------~~~~~vv~~hH~P~~~-~~~~------~d~~--- 178 (275)
T PRK11148 126 LLDSQVF----GV-PHGELSEYQLEWLERKLADA------------PERHTLVLLHHHPLPA-GCAW------LDQH--- 178 (275)
T ss_pred EecCCCC----CC-cCCEeCHHHHHHHHHHHhhC------------CCCCeEEEEcCCCCCC-Ccch------hhcc---
Confidence 9999533 22 36889999999999998753 34567777776 5433 1111 0111
Q ss_pred CCCCChHHHHHHHHcC-CeeEEEeccCCCCCcccccCCeEEEecCCCCCCC------CCCCCCCceeEEEEEeccccccc
Q 016429 274 SASVNSGFFTTMVAAG-DVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHA------YGKAGWERRARVVVASLEKTEKR 346 (390)
Q Consensus 274 ~~~~~~~~~~~l~~~~-~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~------~~~~~~~~g~rv~ei~~~~~~~~ 346 (390)
...|.+.+.++++.+ +|+++||||+|. .++...+|+.++.+++++++- +......+|||+++++.+.
T Consensus 179 -~l~n~~~l~~ll~~~~~v~~vl~GH~H~-~~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~~~~~l~~~g---- 252 (275)
T PRK11148 179 -SLRNAHELAEVLAKFPNVKAILCGHIHQ-ELDLDWNGRRLLATPSTCVQFKPHCTNFTLDTVAPGWRELELHADG---- 252 (275)
T ss_pred -CCCCHHHHHHHHhcCCCceEEEecccCh-HHhceECCEEEEEcCCCcCCcCCCCCccccccCCCcEEEEEEcCCC----
Confidence 124666677777775 899999999999 677788999999999887642 1112345799999996321
Q ss_pred CCCCcCceEEEEEccCCC
Q 016429 347 GWGDVKSIKTWKRLDDEH 364 (390)
Q Consensus 347 ~~~~~~~~~tw~r~~~~~ 364 (390)
...+++.|++.+.
T Consensus 253 -----~~~~~~~~~~~~~ 265 (275)
T PRK11148 253 -----SLETEVHRLADTE 265 (275)
T ss_pred -----cEEEEEEEcCCCC
Confidence 3456667877643
No 5
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.96 E-value=9.4e-27 Score=212.33 Aligned_cols=235 Identities=23% Similarity=0.227 Sum_probs=150.9
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
|||+++||+|++.......... ......++.+.+.+++.+||+||++||++. .+..+..+.+..+.+.+.+.
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~-------~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~-~~~~~~~~~~~~~~~~l~~l 72 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYY-------RNSLEKLEEAVEEWNRESLDFVVQLGDIID-GDNARAEEALDAVLAILDRL 72 (267)
T ss_pred CeEEEEeccccccCCCcccchH-------HHhHHHHHHHHHHHHcCCCCEEEECCCeec-CCCchHHHHHHHHHHHHHhc
Confidence 7999999999876432110000 012334455555666678999999999654 43432334444444444457
Q ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeCCCCCC
Q 016429 124 NIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYST 203 (390)
Q Consensus 124 ~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~~~~~ 203 (390)
++|++++|||||....... ... . .. ....+..+|++...+ +++++|||..++.
T Consensus 73 ~~p~~~v~GNHD~~~~~~~-~~~----~--------~~---~~~~~~~yysf~~~~-----------~~~i~lds~~~~~ 125 (267)
T cd07396 73 KGPVHHVLGNHDLYNPSRE-YLL----L--------YT---LLGLGAPYYSFSPGG-----------IRFIVLDGYDISA 125 (267)
T ss_pred CCCEEEecCccccccccHh-hhh----c--------cc---ccCCCCceEEEecCC-----------cEEEEEeCCcccc
Confidence 8999999999998654221 110 0 00 012233467777665 8899999965432
Q ss_pred CC---C----------------------CCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhh
Q 016429 204 VP---S----------------------VPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAY 258 (390)
Q Consensus 204 ~~---~----------------------~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~ 258 (390)
.. . ....|.++++|++||+++|++... ...++|+|+|||+.....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~----------~~~~viV~~Hhp~~~~~~ 195 (267)
T cd07396 126 LGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADA----------NGEKVIIFSHFPLHPEST 195 (267)
T ss_pred ccCCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHh----------cCCeEEEEEeccCCCCCC
Confidence 10 0 002478999999999999987643 456799999999854211
Q ss_pred ccCCCcccccCCCCCCCCCChHHHHHHHHc-CCeeEEEeccCCCCCcccccCCeEEEecCCCCCCCCCCCCCCceeEEEE
Q 016429 259 FDQSNFTGVRQEGISSASVNSGFFTTMVAA-GDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVVV 337 (390)
Q Consensus 259 ~~~~~~~g~~~e~~~~~~~~~~~~~~l~~~-~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~~~~~~~~~g~rv~e 337 (390)
. . .....+.+.+..+++. .+|+++||||+|.+. ....+|+.++..|+++.+ ++ ..+-+.+++
T Consensus 196 -~--------~---~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~-~~~~~gi~~~~~~a~~~~--~~--~~~~~~~~~ 258 (267)
T cd07396 196 -S--------P---HGLLWNHEEVLSILRAYGCVKACISGHDHEGG-YAQRHGIHFLTLEGMVET--PP--ESNAFGVVI 258 (267)
T ss_pred -C--------c---cccccCHHHHHHHHHhCCCEEEEEcCCcCCCC-ccccCCeeEEEechhhcC--CC--CCCceEEEE
Confidence 0 0 1112355566677766 589999999999964 555899999999999877 32 346788888
Q ss_pred Eec
Q 016429 338 ASL 340 (390)
Q Consensus 338 i~~ 340 (390)
+..
T Consensus 259 ~~~ 261 (267)
T cd07396 259 VYE 261 (267)
T ss_pred EeC
Confidence 874
No 6
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.94 E-value=1.6e-25 Score=201.75 Aligned_cols=210 Identities=24% Similarity=0.331 Sum_probs=139.0
Q ss_pred EEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc--CCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHh
Q 016429 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE--KPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (390)
Q Consensus 45 ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~ 122 (390)
||+++||+|++......+.. ......++.+.+.+++. +||+||++||++ ..+.++.++.+.+.++.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~--------~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~-~~~~~~~~~~~~~~l~~--- 68 (240)
T cd07402 1 LLAQISDLHLRADGEGALLG--------VDTAASLEAVLAHINALHPRPDLVLVTGDLT-DDGSPESYERLRELLAA--- 68 (240)
T ss_pred CEEEEeCCccCCCCcceecC--------cCHHHHHHHHHHHHHhcCCCCCEEEECccCC-CCCCHHHHHHHHHHHhh---
Confidence 68999999999653211100 01233455566666665 999999999955 44445555555555554
Q ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeCCCCC
Q 016429 123 SNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYS 202 (390)
Q Consensus 123 ~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~~~~ 202 (390)
.++|+++|+||||... ...+.+..... ..+..+|++.+.+ ++++++||....
T Consensus 69 ~~~p~~~v~GNHD~~~-----~~~~~~~~~~~------------~~~~~~~~~~~~~-----------~~~i~lds~~~~ 120 (240)
T cd07402 69 LPIPVYLLPGNHDDRA-----AMRAVFPELPP------------APGFVQYVVDLGG-----------WRLILLDSSVPG 120 (240)
T ss_pred cCCCEEEeCCCCCCHH-----HHHHhhccccc------------cccccceeEecCC-----------EEEEEEeCCCCC
Confidence 5899999999999832 11122111000 1223457776665 899999995432
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHH
Q 016429 203 TVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFF 282 (390)
Q Consensus 203 ~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~ 282 (390)
. ..+++.++|++||++.|++. ..+++|+++|||+......+ ... ....+...+
T Consensus 121 ~-----~~~~~~~~ql~wL~~~L~~~------------~~~~~il~~H~pp~~~~~~~------~~~----~~~~~~~~~ 173 (240)
T cd07402 121 Q-----HGGELCAAQLDWLEAALAEA------------PDKPTLVFLHHPPFPVGIAW------MDA----IGLRNAEAL 173 (240)
T ss_pred C-----cCCEECHHHHHHHHHHHHhC------------CCCCEEEEECCCCccCCchh------hhh----hhCCCHHHH
Confidence 1 35679999999999997752 45789999999985421111 000 112355666
Q ss_pred HHHHHcC-CeeEEEeccCCCCCcccccCCeEEEecCCCCCC
Q 016429 283 TTMVAAG-DVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYH 322 (390)
Q Consensus 283 ~~l~~~~-~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~ 322 (390)
..++..+ +++++||||+|. ......+|++++.+++.+++
T Consensus 174 ~~~l~~~~~v~~v~~GH~H~-~~~~~~~g~~~~~~gs~~~~ 213 (240)
T cd07402 174 AAVLARHPNVRAILCGHVHR-PIDGSWGGIPLLTAPSTCHQ 213 (240)
T ss_pred HHHHhcCCCeeEEEECCcCc-hHHeEECCEEEEEcCcceee
Confidence 6777766 899999999999 57777899999999988764
No 7
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.94 E-value=2.6e-25 Score=206.42 Aligned_cols=262 Identities=16% Similarity=0.118 Sum_probs=158.6
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHH-hcCCCEEEEcCCcCCCCChh--hHHHHHHHHH
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS-AEKPDLIVFTGDNIFGFDAT--DAAKSLNAAF 117 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~~pD~Vv~~GD~i~~~~~~--~~~~~~~~~l 117 (390)
+.++||++++|+|.+... ...+ +..+++ ..+|||||++||++++.+.. ..+..+.+.+
T Consensus 2 ~~~~~f~v~gD~~~~~~~----------------~~~~---~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~ 62 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNN----------------STNT---LDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQI 62 (294)
T ss_pred CCcEEEEEEEECCCCCCC----------------cHHH---HHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHH
Confidence 568999999999975211 1222 333333 37999999999977665543 4455666667
Q ss_pred hHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEe
Q 016429 118 APAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLD 197 (390)
Q Consensus 118 ~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~ld 197 (390)
+++. ..+|+++++||||.............. . ....+.......+..+|++.+.+ +++++||
T Consensus 63 ~~~~-~~~P~~~~~GNHD~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~Ysf~~g~-----------v~fi~Ld 124 (294)
T cd00839 63 EPLA-SYVPYMVTPGNHEADYNFSFYKIKAFF----P--RFRFPHSPSGSTSNLWYSFDVGP-----------VHFVSLS 124 (294)
T ss_pred HHHH-hcCCcEEcCcccccccCCCCccccccc----c--cccccCCCCCCCCCceEEEeeCC-----------EEEEEEe
Confidence 6653 479999999999987653321100000 0 00001100112233468888766 8999999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCC
Q 016429 198 SGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASV 277 (390)
Q Consensus 198 s~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~ 277 (390)
|..... .+.+..+|++||++.|++..+ ...+++|+++|+|++...... ... .....
T Consensus 125 s~~~~~------~~~~~~~q~~WL~~~L~~~~~---------~~~~~~iv~~H~P~~~~~~~~-------~~~--~~~~~ 180 (294)
T cd00839 125 TEVDFY------GDGPGSPQYDWLEADLAKVDR---------SKTPWIIVMGHRPMYCSNTDH-------DDC--IEGEK 180 (294)
T ss_pred cccccc------cCCCCcHHHHHHHHHHHHhcc---------cCCCeEEEEeccCcEecCccc-------ccc--chhHH
Confidence 954321 346889999999999987543 134579999999996532111 000 00113
Q ss_pred ChHHHHHHHHcCCeeEEEeccCCCCCcccc---------------cCCeEEEecCCCCCCCCCC------CC------CC
Q 016429 278 NSGFFTTMVAAGDVKAVFTGHDHVNDFCGR---------------LTGIQLCYGGGFGYHAYGK------AG------WE 330 (390)
Q Consensus 278 ~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~---------------~~gi~~~~~~~~g~~~~~~------~~------~~ 330 (390)
..+.|..|+++++|+++|+||+|....... -+|+..+..|+.|...+.. +. ..
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~~~~ 260 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFSAPPPAWSAFRESD 260 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCcCcccCCCCCceEEEecc
Confidence 446678888888999999999998654332 2466555555554222110 11 23
Q ss_pred ceeEEEEEecccccccCCCCcCceEEEEEccCCCCCcccceeEe
Q 016429 331 RRARVVVASLEKTEKRGWGDVKSIKTWKRLDDEHLTGVDGHVLW 374 (390)
Q Consensus 331 ~g~rv~ei~~~~~~~~~~~~~~~~~tw~r~~~~~~~~~d~~~l~ 374 (390)
.|+-++++..++ .-...|++..++. ++|+.+|.
T Consensus 261 ~g~~~~~~~~~t---------~l~~~~~~~~~g~--v~D~f~i~ 293 (294)
T cd00839 261 YGFGRLTVHNST---------HLHFEWIRNDDGV--VIDSFWII 293 (294)
T ss_pred CCEEEEEEEecC---------eEEEEEEECCCCe--EEEEEEEe
Confidence 677777775211 2345566666664 89998875
No 8
>PLN02533 probable purple acid phosphatase
Probab=99.92 E-value=3.8e-23 Score=199.06 Aligned_cols=263 Identities=19% Similarity=0.169 Sum_probs=157.5
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHh
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPA 120 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~ 120 (390)
..++||++++|+|.... . ....+.+++.+||||+++||+++.+.....+..+.+.++++
T Consensus 137 ~~~~~f~v~GDlG~~~~-----------------~----~~tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l 195 (427)
T PLN02533 137 KFPIKFAVSGDLGTSEW-----------------T----KSTLEHVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPL 195 (427)
T ss_pred CCCeEEEEEEeCCCCcc-----------------c----HHHHHHHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhH
Confidence 36799999999974321 1 12234456679999999999777655444455666666665
Q ss_pred HhCCCCEEEEeCCCCCCCCCC--HHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeC
Q 016429 121 IASNIPWVAVLGNHDQESTLS--REGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDS 198 (390)
Q Consensus 121 ~~~~ip~~~v~GNHD~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds 198 (390)
. ..+|+++++||||...... ...+..+...+ ..|.......+..+|++++++ +++++|||
T Consensus 196 ~-s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf------~mP~~~~g~~~~~yYSfd~g~-----------vhfI~Lds 257 (427)
T PLN02533 196 A-SQRPWMVTHGNHELEKIPILHPEKFTAYNARW------RMPFEESGSTSNLYYSFNVYG-----------VHIIMLGS 257 (427)
T ss_pred h-hcCceEEeCccccccccccccCcCccchhhcc------cCCccccCCCCCceEEEEECC-----------EEEEEEeC
Confidence 3 5799999999999864211 00111111111 112110111233578888877 89999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCC
Q 016429 199 GDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVN 278 (390)
Q Consensus 199 ~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~ 278 (390)
... + ....+|++||++.|++..+ ....++|+++|+|++...... .+.. +. ...
T Consensus 258 ~~~--------~-~~~~~Q~~WLe~dL~~~~r---------~~~pwiIv~~H~P~y~s~~~~----~~~~-~~----~~~ 310 (427)
T PLN02533 258 YTD--------F-EPGSEQYQWLENNLKKIDR---------KTTPWVVAVVHAPWYNSNEAH----QGEK-ES----VGM 310 (427)
T ss_pred Ccc--------c-cCchHHHHHHHHHHHhhcc---------cCCCEEEEEeCCCeeeccccc----CCcc-hh----HHH
Confidence 421 1 1467899999999987543 244679999999997632111 0000 00 011
Q ss_pred hHHHHHHHHcCCeeEEEeccCCCCCcccc-------cCCeEEEecCCCCCC-----CC--CCCCC------CceeEEEEE
Q 016429 279 SGFFTTMVAAGDVKAVFTGHDHVNDFCGR-------LTGIQLCYGGGFGYH-----AY--GKAGW------ERRARVVVA 338 (390)
Q Consensus 279 ~~~~~~l~~~~~v~~v~~GH~H~~~~~~~-------~~gi~~~~~~~~g~~-----~~--~~~~~------~~g~rv~ei 338 (390)
.+.|+.|+.+++|+++|+||+|.++.... ..|...+..|+.|.. .+ ..+.| .-|+-.+++
T Consensus 311 r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~~~~G~~~l~v 390 (427)
T PLN02533 311 KESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKYIDPKPDISLFREASFGHGQLNV 390 (427)
T ss_pred HHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccccCCCCCCceeEEeccCCEEEEEE
Confidence 35678888888999999999998654321 134444444444421 11 11223 234445554
Q ss_pred ecccccccCCCCcCceEEEEEccCCCCCcccceeEeeccc
Q 016429 339 SLEKTEKRGWGDVKSIKTWKRLDDEHLTGVDGHVLWSKTS 378 (390)
Q Consensus 339 ~~~~~~~~~~~~~~~~~tw~r~~~~~~~~~d~~~l~~~~~ 378 (390)
.. . ..-..+|+|+.++...+.|+.+|.+...
T Consensus 391 ~n---~------t~l~~~~~~~~~~~~~~~D~~~i~~~~~ 421 (427)
T PLN02533 391 VD---A------NTMEWTWHRNDDDQSVASDSVWLKSLLT 421 (427)
T ss_pred Ec---C------CeEEEEEEecCCCCceeeeEEEEEeccC
Confidence 31 1 2456788998887556789988877544
No 9
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.91 E-value=8.2e-23 Score=179.94 Aligned_cols=162 Identities=19% Similarity=0.225 Sum_probs=107.6
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
|+|+++||+|+...... + .-...++.+.+.+++.+||+||++||++........+..+.+.++.+.+.
T Consensus 1 f~~~~~~D~q~~~~~~~-------~-----~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~ 68 (214)
T cd07399 1 FTLAVLPDTQYYTESYP-------E-----VFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKA 68 (214)
T ss_pred CEEEEecCCCcCCcCCH-------H-----HHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 68999999998754211 0 01123455666666789999999999554443255677777788877667
Q ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeCCCCCC
Q 016429 124 NIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYST 203 (390)
Q Consensus 124 ~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~~~~~ 203 (390)
++|+++++||||. ++.+|+.
T Consensus 69 ~~p~~~~~GNHD~--------------------------------------------------------~~~ld~~---- 88 (214)
T cd07399 69 GIPYSVLAGNHDL--------------------------------------------------------VLALEFG---- 88 (214)
T ss_pred CCcEEEECCCCcc--------------------------------------------------------hhhCCCC----
Confidence 8999999999992 1122331
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHHH
Q 016429 204 VPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFT 283 (390)
Q Consensus 204 ~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~ 283 (390)
++.+|++||+++|++. +.+++|+++|||+.... .+.... ..+ .....+.+.|.
T Consensus 89 ---------~~~~ql~WL~~~L~~~------------~~~~~iv~~H~p~~~~~-~~~~~~-~~~----~~~~~~~~~~~ 141 (214)
T cd07399 89 ---------PRDEVLQWANEVLKKH------------PDRPAILTTHAYLNCDD-SRPDSI-DYD----SDVNDGQQIWD 141 (214)
T ss_pred ---------CCHHHHHHHHHHHHHC------------CCCCEEEEecccccCCC-CcCccc-ccc----cccccHHHHHH
Confidence 3578999999998742 56789999999986421 110000 000 01112335687
Q ss_pred HHHHcC-CeeEEEeccCCCCCc
Q 016429 284 TMVAAG-DVKAVFTGHDHVNDF 304 (390)
Q Consensus 284 ~l~~~~-~v~~v~~GH~H~~~~ 304 (390)
+|++.+ +|++|||||+|....
T Consensus 142 ~ll~~~~~V~~v~~GH~H~~~~ 163 (214)
T cd07399 142 KLVKKNDNVFMVLSGHVHGAGR 163 (214)
T ss_pred HHHhCCCCEEEEEccccCCCce
Confidence 888766 899999999999543
No 10
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.90 E-value=4.5e-22 Score=183.09 Aligned_cols=239 Identities=16% Similarity=0.198 Sum_probs=144.9
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChh-----hHHHHHHHHHh
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT-----DAAKSLNAAFA 118 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~-----~~~~~~~~~l~ 118 (390)
++|++++|...+... ......+.|.+.+++.+|||||++||++++.+.. ...+.+.+.+.
T Consensus 1 ~~f~~~gD~g~~~~~---------------~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~ 65 (277)
T cd07378 1 LRFLALGDWGGGGTA---------------GQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYS 65 (277)
T ss_pred CeEEEEeecCCCCCH---------------HHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHcc
Confidence 478999999865211 1234556777777778999999999987776532 11223344443
Q ss_pred HhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeC
Q 016429 119 PAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDS 198 (390)
Q Consensus 119 ~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds 198 (390)
.+ ..++|+++++||||...+.... ..+. ..+ ..+. ...+..+|++...... ....+++++|||
T Consensus 66 ~~-~~~~P~~~v~GNHD~~~~~~~~--~~~~-~~~-----~~~~---~~~~~~~y~~~~~~~~-----~~~~~~~i~LDt 128 (277)
T cd07378 66 AP-SLQVPWYLVLGNHDYSGNVSAQ--IDYT-KRP-----NSPR---WTMPAYYYRVSFPFPS-----SDTTVEFIMIDT 128 (277)
T ss_pred ch-hhcCCeEEecCCcccCCCchhe--eehh-ccC-----CCCC---ccCcchheEEEeecCC-----CCCEEEEEEEeC
Confidence 33 2689999999999997543211 0010 000 0111 1122346777664210 012389999999
Q ss_pred CCCCCCCC------CCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCC
Q 016429 199 GDYSTVPS------VPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGI 272 (390)
Q Consensus 199 ~~~~~~~~------~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~ 272 (390)
..+..... ....+.+..+|++||+++|++. ...++|+++|||+....... ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~------------~~~~~iv~~H~P~~~~~~~~------~~---- 186 (277)
T cd07378 129 VPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAAS------------TADWKIVVGHHPIYSSGEHG------PT---- 186 (277)
T ss_pred hhHcCccccccccccCcchhhHHHHHHHHHHHHHhc------------CCCeEEEEeCccceeCCCCC------Cc----
Confidence 76532210 1124668999999999998753 34789999999986521110 00
Q ss_pred CCCCCChHHHHHHHHcCCeeEEEeccCCCCCcccccC--CeEEEecCCCCCCCCCC-------------CCCCceeEEEE
Q 016429 273 SSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLT--GIQLCYGGGFGYHAYGK-------------AGWERRARVVV 337 (390)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~--gi~~~~~~~~g~~~~~~-------------~~~~~g~rv~e 337 (390)
......+..++++++|+++|+||+|.... ...+ |+..+.+|+.+...+.. .....||.+++
T Consensus 187 ---~~~~~~l~~l~~~~~v~~vl~GH~H~~~~-~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~ 262 (277)
T cd07378 187 ---SCLVDRLLPLLKKYKVDAYLSGHDHNLQH-IKDDGSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLE 262 (277)
T ss_pred ---HHHHHHHHHHHHHcCCCEEEeCCccccee-eecCCCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEE
Confidence 11235677888888899999999998543 3344 78777666555321111 11246888888
Q ss_pred Eec
Q 016429 338 ASL 340 (390)
Q Consensus 338 i~~ 340 (390)
|+.
T Consensus 263 v~~ 265 (277)
T cd07378 263 LTK 265 (277)
T ss_pred Eec
Confidence 873
No 11
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.90 E-value=2.3e-22 Score=181.91 Aligned_cols=201 Identities=15% Similarity=0.156 Sum_probs=116.7
Q ss_pred EEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCCh--------hhHHHHHHHHH
Q 016429 46 ILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDA--------TDAAKSLNAAF 117 (390)
Q Consensus 46 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~--------~~~~~~~~~~l 117 (390)
|+|+||+|++...... .....+.+.+.++..+||+||++||++..... +..+..+.+.+
T Consensus 2 ~~~iSDlH~g~~~~~~-------------~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~ 68 (256)
T cd07401 2 FVHISDIHVSSFHPPN-------------RAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNIL 68 (256)
T ss_pred EEEecccccCCcCchh-------------hhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHH
Confidence 7999999999643210 00012456677888999999999996654321 11222333333
Q ss_pred hHhHh-CCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEE
Q 016429 118 APAIA-SNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFL 196 (390)
Q Consensus 118 ~~~~~-~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~l 196 (390)
..... ..+|++.|+||||.....+.+...+++.++. .... .....|...... ..+++++|
T Consensus 69 ~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~y~---~~~~-------~~~~~~~~~~~~---------~~~~~I~L 129 (256)
T cd07401 69 KESSVINKEKWFDIRGNHDLFNIPSLDSENNYYRKYS---ATGR-------DGSFSFSHTTRF---------GNYSFIGV 129 (256)
T ss_pred HHhCCCCcceEEEeCCCCCcCCCCCccchhhHHHHhh---eecC-------CCccceEEEecC---------CCEEEEEE
Confidence 32211 2589999999999965433222222222210 0000 011122222101 12899999
Q ss_pred eCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCC
Q 016429 197 DSGDYSTV-PSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSA 275 (390)
Q Consensus 197 ds~~~~~~-~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~ 275 (390)
||..+... ......|.+.++|++||++.|++.. ..+++|+++|||+...... . .
T Consensus 130 dt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~~~-----------~~~~~IV~~HhP~~~~~~~-----------~---~ 184 (256)
T cd07401 130 DPTLFPGPKRPFNFFGSLDKKLLDRLEKELEKST-----------NSNYTIWFGHYPTSTIISP-----------S---A 184 (256)
T ss_pred cCccCCCCCCCCceeccCCHHHHHHHHHHHHhcc-----------cCCeEEEEEcccchhccCC-----------C---c
Confidence 99754211 1111347899999999999887542 3467999999998431100 0 0
Q ss_pred CCChHHHHHHHHcCCeeEEEeccCCCCCc
Q 016429 276 SVNSGFFTTMVAAGDVKAVFTGHDHVNDF 304 (390)
Q Consensus 276 ~~~~~~~~~l~~~~~v~~v~~GH~H~~~~ 304 (390)
.+...+..++++++|+++||||+|.+..
T Consensus 185 -~~~~~~~~ll~~~~v~~vl~GH~H~~~~ 212 (256)
T cd07401 185 -KSSSKFKDLLKKYNVTAYLCGHLHPLGG 212 (256)
T ss_pred -chhHHHHHHHHhcCCcEEEeCCccCCCc
Confidence 1122266777777899999999999654
No 12
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.88 E-value=4e-21 Score=178.33 Aligned_cols=222 Identities=20% Similarity=0.241 Sum_probs=129.6
Q ss_pred EEEEecccccCCC----C--CCCCCCCcc------------ccc--CC-CChhHHHHHHHHHHhc--CCCEEEEcCCcCC
Q 016429 46 ILQVADMHFANGK----T--TPCLDVLPS------------QVA--GC-SDLNTTAFINRMISAE--KPDLIVFTGDNIF 102 (390)
Q Consensus 46 i~~iSDlH~~~~~----~--~~~~~~~~~------------~~~--~~-~~~~~~~~l~~~i~~~--~pD~Vv~~GD~i~ 102 (390)
|+|+||+|++..- . ..|...... .++ .| ....+++.+.+.+++. +|||||++||++.
T Consensus 1 ~l~~sDiH~D~~Y~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~ 80 (296)
T cd00842 1 FLHISDIHYDPLYKVGSEYSANCHSPLCCRDESGDISPPAGPWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVR 80 (296)
T ss_pred CEEeeccCCCCCCcCCCCCcCCCCCCCccCCCCCCCCCCCCCCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCC
Confidence 6899999998321 2 345443211 122 24 3455667777777766 9999999999766
Q ss_pred CCChhhHHH-----HHHHHHhHhHh--CCCCEEEEeCCCCCCCCC------CH----HHHHHHHHHcCCCccccCCCCCc
Q 016429 103 GFDATDAAK-----SLNAAFAPAIA--SNIPWVAVLGNHDQESTL------SR----EGVMKHIVTLKNTLSQVNPSDAH 165 (390)
Q Consensus 103 ~~~~~~~~~-----~~~~~l~~~~~--~~ip~~~v~GNHD~~~~~------~~----~~~~~~~~~~~~~~~~~~p~~~~ 165 (390)
........+ ....++..+.+ .++|++.++||||..... .. +.+.+....+ .+.+..
T Consensus 81 h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~~-------l~~~~~ 153 (296)
T cd00842 81 HDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKSW-------LPEEAE 153 (296)
T ss_pred CCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHhh-------cCHHHH
Confidence 654321111 12222222222 579999999999986431 11 1222222211 111101
Q ss_pred -cccCccceeEEeccCCCCCCCCcceEEEEEEeCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCC
Q 016429 166 -IIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYSTVPSVP--GYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAP 242 (390)
Q Consensus 166 -~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~~~~~~~~~~--~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~ 242 (390)
....-++|+..+.+ .+++++|||..+....... ..+.....|++||+++|+++++ .+
T Consensus 154 ~~~~~ggYY~~~~~~----------~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~----------~~ 213 (296)
T cd00842 154 ETFKKGGYYSVPVKP----------GLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQ----------AG 213 (296)
T ss_pred HHhhcceEEEEEcCC----------CeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHH----------CC
Confidence 11122556666322 2899999997654321110 1233568999999999998764 45
Q ss_pred CCeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHHHHHHHcCC--eeEEEeccCCCCCccccc
Q 016429 243 APGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGD--VKAVFTGHDHVNDFCGRL 308 (390)
Q Consensus 243 ~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~l~~~~~--v~~v~~GH~H~~~~~~~~ 308 (390)
.+++|++|+|+....... .....+.+..|++++. |.++|+||+|..++...+
T Consensus 214 ~~v~I~~HiPp~~~~~~~--------------~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~~~ 267 (296)
T cd00842 214 EKVWIIGHIPPGVNSYDT--------------LENWSERYLQIINRYSDTIAGQFFGHTHRDEFRVFY 267 (296)
T ss_pred CeEEEEeccCCCCccccc--------------chHHHHHHHHHHHHHHHhhheeeecccccceEEEEe
Confidence 779999999985421000 0123455677777664 789999999997665544
No 13
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=7.5e-21 Score=177.36 Aligned_cols=264 Identities=19% Similarity=0.218 Sum_probs=171.6
Q ss_pred CCCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChh-hHHHHHHHHHh
Q 016429 40 QNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT-DAAKSLNAAFA 118 (390)
Q Consensus 40 ~~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~-~~~~~~~~~l~ 118 (390)
++.+.+++++.|+-...+... + +.......++|+|++.||+.++.+.. ..++.+.++++
T Consensus 144 ~~~~~~~~i~GDlG~~~~~~s-----------------~---~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vE 203 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPYTS-----------------T---LRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVE 203 (452)
T ss_pred ccCceeEEEEccccccccccc-----------------h---HhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhh
Confidence 457899999999987765421 1 11111223799999999988888766 47778888888
Q ss_pred HhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeC
Q 016429 119 PAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDS 198 (390)
Q Consensus 119 ~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds 198 (390)
++ ++.+|++++.||||.+...+. .+. ++......|..........+|++++++ +++++|+|
T Consensus 204 p~-As~vPymv~~GNHE~d~~~~~-~F~------~y~~Rf~mP~~~s~s~~~l~YSfd~G~-----------vhfv~lss 264 (452)
T KOG1378|consen 204 PI-ASYVPYMVCSGNHEIDWPPQP-CFV------PYSARFNMPGNSSESDSNLYYSFDVGG-----------VHFVVLST 264 (452)
T ss_pred hh-hccCceEEecccccccCCCcc-ccc------ccceeeccCCCcCCCCCceeEEEeecc-----------EEEEEEec
Confidence 86 478999999999999876432 000 111111223221222223579999988 89999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCC
Q 016429 199 GDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVN 278 (390)
Q Consensus 199 ~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~ 278 (390)
..|. +. ....+|.+||++.|+++.++ +..++|++.|.|++...... ...|+. +..-
T Consensus 265 e~~~---~~----~~~~~QY~WL~~dL~~v~r~---------~tPWlIv~~HrP~Y~S~~~~------~~reG~--~~~~ 320 (452)
T KOG1378|consen 265 ETYY---NF----LKGTAQYQWLERDLASVDRK---------KTPWLIVQGHRPMYCSSNDA------HYREGE--FESM 320 (452)
T ss_pred cccc---cc----cccchHHHHHHHHHHHhccc---------CCCeEEEEecccceecCCch------hhccCc--chhh
Confidence 6443 11 14568999999999987642 36899999999998743311 111211 0011
Q ss_pred hHHHHHHHHcCCeeEEEeccCCCCCcccccCC------------------eEEEecCCCC-------------CCCCCCC
Q 016429 279 SGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTG------------------IQLCYGGGFG-------------YHAYGKA 327 (390)
Q Consensus 279 ~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~g------------------i~~~~~~~~g-------------~~~~~~~ 327 (390)
...|+.|+-+++|+++|.||+|.++....+.+ +.+..|.+.. ++.+..
T Consensus 321 ~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~~~~p~~Sa~R~- 399 (452)
T KOG1378|consen 321 REGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFSSPQPEWSAFRE- 399 (452)
T ss_pred HHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCcccCCCCccccccc-
Confidence 24588999888999999999999876553211 2222222211 111221
Q ss_pred CCCceeEEEEEecccccccCCCCcCceEEEEEccCCCCCcccceeEeecc
Q 016429 328 GWERRARVVVASLEKTEKRGWGDVKSIKTWKRLDDEHLTGVDGHVLWSKT 377 (390)
Q Consensus 328 ~~~~g~rv~ei~~~~~~~~~~~~~~~~~tw~r~~~~~~~~~d~~~l~~~~ 377 (390)
..-|+-++++... .....+|.|+.+++..+.|+.+|.+..
T Consensus 400 -~dfG~~~L~v~N~---------TH~~~~~~~~~d~~g~~~D~fwl~k~~ 439 (452)
T KOG1378|consen 400 -GDFGYTRLTAKNG---------THAHVHWVRNSDASGVVIDSFWLIKDY 439 (452)
T ss_pred -ccCCeEEEEEecC---------ceEEEEEEeccCCCceEeeeEEEEccc
Confidence 2357777777621 267899999988777799998888764
No 14
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.86 E-value=2.8e-19 Score=169.01 Aligned_cols=134 Identities=14% Similarity=0.164 Sum_probs=86.9
Q ss_pred CccceeEE-eccCCCCCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEE
Q 016429 169 GFGNYNLE-IGGVKGSGFENKSVLNLYFLDSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLV 247 (390)
Q Consensus 169 g~~~y~~~-~~~~~~~~~~~~~~~~l~~lds~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv 247 (390)
|..+|++. ..+ +++|+|||..+ +....|.++++|++||+++|++ .+.+++||
T Consensus 290 G~~YYSFd~~gg-----------vrfIvLDSt~~----~G~~~G~L~eeQL~WLeqeLa~------------a~~k~VVV 342 (496)
T TIGR03767 290 GTGYYTFDIAGG-----------VRGISMDTTNR----AGGDEGSLGQTQFKWIKDTLRA------------SSDTLFVL 342 (496)
T ss_pred CCceEEEEeECC-----------EEEEEEeCCCc----CCCcCCccCHHHHHHHHHHHhc------------CCCCCEEE
Confidence 55678888 444 89999999632 1123688999999999999874 25578999
Q ss_pred EEecChhhhhhccCCCcccccCCCCCCCCCChHHHHHHHHcC-CeeEEEeccCCCCCccccc--------CCeEEEecCC
Q 016429 248 YFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAG-DVKAVFTGHDHVNDFCGRL--------TGIQLCYGGG 318 (390)
Q Consensus 248 ~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~l~~~~-~v~~v~~GH~H~~~~~~~~--------~gi~~~~~~~ 318 (390)
|+|||+......+... ........|.+.|..+++.+ +|.++||||.|.+...... .|+|-+.+++
T Consensus 343 f~HHPp~s~g~~~~Dp------~~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaS 416 (496)
T TIGR03767 343 FSHHTSWSMVNELTDP------VDPGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTAS 416 (496)
T ss_pred EECCCCcccccccccc------ccccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccc
Confidence 9999985422222110 00011123554555555554 8999999999997533211 3566554432
Q ss_pred CCCCCCCCCCCCceeEEEEEeccc
Q 016429 319 FGYHAYGKAGWERRARVVVASLEK 342 (390)
Q Consensus 319 ~g~~~~~~~~~~~g~rv~ei~~~~ 342 (390)
+. +|+.-+|+|||..+.
T Consensus 417 --lv-----dfPq~~Ri~Ei~~n~ 433 (496)
T TIGR03767 417 --HI-----DFPQQGRIIELADNQ 433 (496)
T ss_pred --cc-----cCCCCceEEEEEeCC
Confidence 22 367889999998543
No 15
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.84 E-value=2.5e-19 Score=159.88 Aligned_cols=214 Identities=18% Similarity=0.075 Sum_probs=119.8
Q ss_pred EEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc--CCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 46 ILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE--KPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 46 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
|.++||+|++....... +...+ ...+.++.+.+.++.. +||+||++||++ .....+. +...++.+.+.
T Consensus 1 ~~~~sDlHl~~~~~~~~-~~~g~-----~~~~~~~~i~~~~~~~~~~~D~viiaGDl~-~~~~~~~---~~~~l~~l~~l 70 (232)
T cd07393 1 IFAIADLHLNLDPTKPM-DVFGP-----EWKNHTEKIKENWDNVVAPEDIVLIPGDIS-WAMKLEE---AKLDLAWIDAL 70 (232)
T ss_pred CeEEEeeccCCCCCCCC-cccCc-----cHHHHHHHHHHHHHhcCCCCCEEEEcCCCc-cCCChHH---HHHHHHHHHhC
Confidence 46899999986432100 00000 1244566677776665 999999999954 3332222 22233323334
Q ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeCCCCCC
Q 016429 124 NIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYST 203 (390)
Q Consensus 124 ~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~~~~~ 203 (390)
..|+++|+||||+.. ...+.+.+.+.+.... +. .+....+.+ +.+++++...+..
T Consensus 71 ~~~v~~V~GNHD~~~-~~~~~~~~~l~~~~~~-----------~~--~n~~~~~~~-----------i~i~G~~~~~~~~ 125 (232)
T cd07393 71 PGTKVLLKGNHDYWW-GSASKLRKALEESRLA-----------LL--FNNAYIDDD-----------VAICGTRGWDNPG 125 (232)
T ss_pred CCCeEEEeCCccccC-CCHHHHHHHHHhcCeE-----------Ee--ccCcEEECC-----------EEEEEEEeeCCCC
Confidence 568999999999843 2334444433221100 00 022222222 5666665311111
Q ss_pred CCC--------CCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCC
Q 016429 204 VPS--------VPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSA 275 (390)
Q Consensus 204 ~~~--------~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~ 275 (390)
.+. ....+.+.+.|+.||++.+++.... ....+.|+++|+|+... .
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~--------~~~~~~i~~~H~p~~~~---~--------------- 179 (232)
T cd07393 126 NPWPPINETLKVEEDEKIFERELERLELSLKAAKKR--------EKEKIKIVMLHYPPANE---N--------------- 179 (232)
T ss_pred CccccccccccchhHHHHHHHHHHHHHHHHHHHHhC--------CCCCCEEEEECCCCcCC---C---------------
Confidence 110 0112445678999999999876532 12247999999987431 0
Q ss_pred CCChHHHHHHHHcCCeeEEEeccCCCCCcc----cccCCeEEEecCCCCC
Q 016429 276 SVNSGFFTTMVAAGDVKAVFTGHDHVNDFC----GRLTGIQLCYGGGFGY 321 (390)
Q Consensus 276 ~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~----~~~~gi~~~~~~~~g~ 321 (390)
.+...+..+++..++++++|||+|..... ...+|+.+...+++++
T Consensus 180 -~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~ 228 (232)
T cd07393 180 -GDDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYL 228 (232)
T ss_pred -CCHHHHHHHHHHcCCCEEEECCCCCCcccccccceECCEEEEEEcchhc
Confidence 12233455655568999999999985432 2468888776666654
No 16
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.83 E-value=1.8e-19 Score=162.13 Aligned_cols=213 Identities=19% Similarity=0.182 Sum_probs=119.8
Q ss_pred EEEecccccCCCCCCCCCCCcccccC-CCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhh---H----HHHHHHHHh
Q 016429 47 LQVADMHFANGKTTPCLDVLPSQVAG-CSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATD---A----AKSLNAAFA 118 (390)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~---~----~~~~~~~l~ 118 (390)
++++|.|+-.....+.+.+.-..... ..+.-..+.+..++...+||+||++||+ ++.+... . ++.+.+++.
T Consensus 1 ~~vaDpql~~~~sy~~~~~~~~~~~~~~~D~ylr~~~~~~~~~l~PD~vv~lGDL-~d~G~~~~~~~~~~~~~rf~~i~~ 79 (257)
T cd08163 1 ALVADPQLVDDHTYPGRPWILNTLTEHFVDNYLRRNWRYMQKQLKPDSTIFLGDL-FDGGRDWADEYWKKEYNRFMRIFD 79 (257)
T ss_pred CcccCCccccCCccCCCchhhhhhhHHhhHHHHHHHHHHHHHhcCCCEEEEeccc-ccCCeeCcHHHHHHHHHHHHHHhc
Confidence 35788888776443322222111111 1233333444555556799999999995 4444321 1 222333332
Q ss_pred HhHhCCCCEEEEeCCCCCCCCCCH--HHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEE
Q 016429 119 PAIASNIPWVAVLGNHDQESTLSR--EGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFL 196 (390)
Q Consensus 119 ~~~~~~ip~~~v~GNHD~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~l 196 (390)
+. ...+|+++||||||....... .....+.+ ..|..+|.+.+.+ +++++|
T Consensus 80 ~~-~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~----------------~Fg~~~~~~~~~~-----------~~fV~L 131 (257)
T cd08163 80 PS-PGRKMVESLPGNHDIGFGNGVVLPVRQRFEK----------------YFGPTSRVIDVGN-----------HTFVIL 131 (257)
T ss_pred CC-CccceEEEeCCCcccCCCCCCCHHHHHHHHH----------------HhCCCceEEEECC-----------EEEEEE
Confidence 21 124799999999998643221 11222221 1122457777766 889999
Q ss_pred eCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCC------
Q 016429 197 DSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQE------ 270 (390)
Q Consensus 197 ds~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e------ 270 (390)
||..... ...+.+...|.+|+++.++.. ....++|+++|+|++..... .| |...|
T Consensus 132 ds~~l~~----~~~~~~~~~~~~~l~~~l~~~-----------~~~~p~ILl~H~Plyr~~~~---~c-g~~re~~~~~~ 192 (257)
T cd08163 132 DTISLSN----KDDPDVYQPPREFLHSFSAMK-----------VKSKPRILLTHVPLYRPPNT---SC-GPLRESKTPLP 192 (257)
T ss_pred ccccccC----CcccccchhHHHHHHhhhhcc-----------CCCCcEEEEeccccccCCCC---CC-CCccccCCCCC
Confidence 9964322 124568889999999876532 25678999999999764321 11 11011
Q ss_pred -CCCCCC---CChHHHHHHHHcCCeeEEEeccCCCCCcccccC
Q 016429 271 -GISSAS---VNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLT 309 (390)
Q Consensus 271 -~~~~~~---~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~ 309 (390)
...... ...+.-..|++.-+..+||+||+|. +|...+
T Consensus 193 ~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~--~C~~~h 233 (257)
T cd08163 193 YGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHD--YCEVVH 233 (257)
T ss_pred CCCCccceeecCHHHHHHHHHhhCCcEEEecCCCc--cceeEc
Confidence 111111 1234445666666789999999995 776443
No 17
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.83 E-value=2.2e-18 Score=160.85 Aligned_cols=252 Identities=12% Similarity=0.104 Sum_probs=144.2
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCCh-----hhHHHHHHH
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDA-----TDAAKSLNA 115 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~-----~~~~~~~~~ 115 (390)
++.++|+.++|.--+.. ......+.|.++.++.++||||-+||++ .++. +...+.+.+
T Consensus 24 ~~~l~F~~vGDwG~g~~----------------~Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~ 86 (394)
T PTZ00422 24 KAQLRFASLGNWGTGSK----------------QQKLVASYLKQYAKNERVTFLVSPGSNF-PGGVDGLNDPKWKHCFEN 86 (394)
T ss_pred CCeEEEEEEecCCCCch----------------hHHHHHHHHHHHHHhCCCCEEEECCccc-cCCCCCccchhHHhhHhh
Confidence 67899999999984321 1234457788888889999999999976 4432 222333444
Q ss_pred HHhHhH-hCCCCEEEEeCCCCCCCCCCHHHHHHHHHH----c-----CCCc-cccCCCCCccccCccceeE--EeccCCC
Q 016429 116 AFAPAI-ASNIPWVAVLGNHDQESTLSREGVMKHIVT----L-----KNTL-SQVNPSDAHIIDGFGNYNL--EIGGVKG 182 (390)
Q Consensus 116 ~l~~~~-~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~----~-----~~~~-~~~~p~~~~~~~g~~~y~~--~~~~~~~ 182 (390)
+..... .+++||+.|+||||+..+... ++...... . .+.. ....| ++.....+|.+ .+....+
T Consensus 87 vY~~~s~~L~~Pwy~vLGNHDy~Gn~~A-Qi~r~~~~y~~~~~~~~~~y~~~~~~~~---RW~mP~~yY~~~~~f~~~~~ 162 (394)
T PTZ00422 87 VYSEESGDMQIPFFTVLGQADWDGNYNA-ELLKGQNVYLNGHGQTDIEYDSNNDIYP---KWIMPNYWYHYFTHFTDTSG 162 (394)
T ss_pred hccCcchhhCCCeEEeCCcccccCCchh-hhccccccccccccccccccccccccCC---CccCCchhheeeeeeecccc
Confidence 443321 267999999999998655432 22211000 0 0000 00111 12222123432 1110000
Q ss_pred CC---C-CCcceEEEEEEeCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhh
Q 016429 183 SG---F-ENKSVLNLYFLDSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAY 258 (390)
Q Consensus 183 ~~---~-~~~~~~~l~~lds~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~ 258 (390)
.. . .....+.++++||...+... .+....+.+++||+++|+... ....++||+.|||++....
T Consensus 163 ~~~~~~~~~~~~v~fifiDT~~l~~~~---~~~~~~~~~w~~L~~~L~~a~----------k~a~WkIVvGHhPIySsG~ 229 (394)
T PTZ00422 163 PSLLKSGHKDMSVAFIFIDTWILSSSF---PYKKVSERAWQDLKATLEYAP----------KIADYIIVVGDKPIYSSGS 229 (394)
T ss_pred cccccccCCCCEEEEEEEECchhcccC---CccccCHHHHHHHHHHHHhhc----------cCCCeEEEEecCceeecCC
Confidence 00 0 01234789999996443210 123357789999999986432 2567999999999976321
Q ss_pred ccCCCcccccCCCCCCCCCChHHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecCCCCCCCCCC----C-----CC
Q 016429 259 FDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGK----A-----GW 329 (390)
Q Consensus 259 ~~~~~~~g~~~e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~~~~----~-----~~ 329 (390)
.. ... .=...+..|+++++|+++++||+|..+.. ..+|+..+.+|+.|...++. + ..
T Consensus 230 hg------~~~-------~L~~~L~PLL~ky~VdlYisGHDH~lq~i-~~~gt~yIvSGaGs~~~~~~~~~~~~s~F~~~ 295 (394)
T PTZ00422 230 SK------GDS-------YLSYYLLPLLKDAQVDLYISGYDRNMEVL-TDEGTAHINCGSGGNSGRKSIMKNSKSLFYSE 295 (394)
T ss_pred CC------CCH-------HHHHHHHHHHHHcCcCEEEEccccceEEe-cCCCceEEEeCccccccCCCCCCCCCcceecC
Confidence 10 000 00136788899999999999999985543 35688877776654322211 0 12
Q ss_pred CceeEEEEEec
Q 016429 330 ERRARVVVASL 340 (390)
Q Consensus 330 ~~g~rv~ei~~ 340 (390)
..|+-.++++.
T Consensus 296 ~~GF~~~~l~~ 306 (394)
T PTZ00422 296 DIGFCIHELNA 306 (394)
T ss_pred CCCEEEEEEec
Confidence 36777777764
No 18
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.83 E-value=2.5e-19 Score=160.95 Aligned_cols=213 Identities=14% Similarity=0.035 Sum_probs=114.6
Q ss_pred EEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCC
Q 016429 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASN 124 (390)
Q Consensus 45 ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ 124 (390)
||+++||+|++.... .....++.+.+.+++.++|+||++||++ +.. +.....+ +.+.++ .+
T Consensus 1 ki~~iSDlH~~~~~~--------------~~~~~l~~~~~~~~~~~~d~vv~~GDl~-~~~-~~~~~~~-~~l~~~--~~ 61 (239)
T TIGR03729 1 KIAFSSDLHIDLNHF--------------DTEEMLETLAQYLKKQKIDHLHIAGDIS-NDF-QRSLPFI-EKLQEL--KG 61 (239)
T ss_pred CEEEEEeecCCCCCC--------------CHHHHHHHHHHHHHhcCCCEEEECCccc-cch-hhHHHHH-HHHHHh--cC
Confidence 689999999852211 1123456667777778999999999954 432 2222222 222221 56
Q ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeC-CCC--
Q 016429 125 IPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDS-GDY-- 201 (390)
Q Consensus 125 ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds-~~~-- 201 (390)
+|+++++||||+......+++.+.. . .. .-......+. .++ +++++++- .+|
T Consensus 62 ~pv~~v~GNHD~~~~~~~~~~~~~~-~-~~----~l~~~~~~~~-~~~------------------~~~ig~~gw~d~~~ 116 (239)
T TIGR03729 62 IKVTFNAGNHDMLKDLTYEEIESND-S-PL----YLHNRFIDIP-NTQ------------------WRIIGNNGWYDYSF 116 (239)
T ss_pred CcEEEECCCCCCCCCCCHHHHHhcc-c-hh----hhcccccccC-CCc------------------eEEEeeccceeccc
Confidence 8999999999986444433332211 0 00 0000000000 000 23333331 000
Q ss_pred -------------------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCC
Q 016429 202 -------------------STVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQS 262 (390)
Q Consensus 202 -------------------~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~ 262 (390)
+........+.+.++|++||++.|++. ...++|+++|||+.......
T Consensus 117 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~------------~~~~~ivvtH~pP~~~~~~~-- 182 (239)
T TIGR03729 117 SNDKTSKEILRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQL------------DNKQVIFVTHFVPHRDFIYV-- 182 (239)
T ss_pred ccccCHHHHHHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhc------------CCCCEEEEEcccchHHHhcC--
Confidence 000010123557889999999988643 45689999999764311100
Q ss_pred CcccccCCCCCCCCCChHHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEec
Q 016429 263 NFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYG 316 (390)
Q Consensus 263 ~~~g~~~e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~ 316 (390)
. .+...........++..+..+++.+++++++|||+|........+|++++..
T Consensus 183 ~-~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~~~~~i~~~~~~~~ 235 (239)
T TIGR03729 183 P-MDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRFGPLTIGGTTYHNR 235 (239)
T ss_pred C-CCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCCCCEEECCEEEEec
Confidence 0 0000000001234666678888777999999999999432344588887654
No 19
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.81 E-value=4e-18 Score=158.39 Aligned_cols=202 Identities=23% Similarity=0.290 Sum_probs=123.4
Q ss_pred eEEEEEecccccC-CCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHh
Q 016429 44 FKILQVADMHFAN-GKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (390)
Q Consensus 44 ~ki~~iSDlH~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~ 122 (390)
|||+||||+|++. .. .....+..+.+.++..+||+||++|| ++..+....++.+.+.++ ...
T Consensus 1 ~~i~~isD~H~~~~~~---------------~~~~~~~~~~~~i~~~~~D~~v~tGD-l~~~~~~~~~~~~~~~l~-~~~ 63 (301)
T COG1409 1 MRIAHISDLHLGALGV---------------DSEELLEALLAAIEQLKPDLLVVTGD-LTNDGEPEEYRRLKELLA-RLE 63 (301)
T ss_pred CeEEEEecCccccccc---------------chHHHHHHHHHHHhcCCCCEEEEccC-cCCCCCHHHHHHHHHHHh-hcc
Confidence 6899999999995 21 12345566666777789999999999 777777788888877777 234
Q ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeCCCCC
Q 016429 123 SNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYS 202 (390)
Q Consensus 123 ~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~~~~ 202 (390)
...|++++|||||......... .+.. .... .+...... .+.++++.+||....
T Consensus 64 ~~~~~~~vpGNHD~~~~~~~~~-~~~~----------~~~~--------~~~~~~~~--------~~~~~~~~~d~~~~~ 116 (301)
T COG1409 64 LPAPVIVVPGNHDARVVNGEAF-SDQF----------FNRY--------AVLVGACS--------SGGWRVIGLDSSVPG 116 (301)
T ss_pred CCCceEeeCCCCcCCchHHHHh-hhhh----------cccC--------cceEeecc--------CCceEEEEecCCCCC
Confidence 6889999999999865432211 1100 0000 01111100 012789999996432
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHH
Q 016429 203 TVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFF 282 (390)
Q Consensus 203 ~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~ 282 (390)
. ..|.++..|++|+++.+++... ......+++.|||++..... ..... ..+...+
T Consensus 117 ~-----~~G~~~~~q~~~l~~~l~~~~~---------~~~~~~v~~~hh~~~~~~~~-------~~~~~----l~~~~~~ 171 (301)
T COG1409 117 V-----PLGRLGAEQLDWLEEALAAAPE---------RAKDTVVVLHHHPLPSPGTG-------VDRVA----LRDAGEL 171 (301)
T ss_pred C-----CCCEECHHHHHHHHHHHHhCcc---------ccCceEEEecCCCCCCCCCc-------cceee----eecchhH
Confidence 1 3577999999999999876431 00124566666666432111 11111 1233334
Q ss_pred HHHHHcC-C-eeEEEeccCCCCC-cccccCCeEEE
Q 016429 283 TTMVAAG-D-VKAVFTGHDHVND-FCGRLTGIQLC 314 (390)
Q Consensus 283 ~~l~~~~-~-v~~v~~GH~H~~~-~~~~~~gi~~~ 314 (390)
..++... + |++|++||.|... ......+..+.
T Consensus 172 ~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~ 206 (301)
T COG1409 172 LDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLS 206 (301)
T ss_pred HHHHHhcCCceEEEEeCcccccccccceeCCeeee
Confidence 4444444 4 9999999999942 55555665544
No 20
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.80 E-value=3e-18 Score=148.27 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=108.6
Q ss_pred EEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCC
Q 016429 46 ILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNI 125 (390)
Q Consensus 46 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~i 125 (390)
|+++||+|.... .+.. ..+++.+||+||++|| ++..+....+..+ +.+ .+.++
T Consensus 1 i~~~sD~H~~~~--------------------~~~~--~~~~~~~~D~vv~~GD-l~~~~~~~~~~~~-~~l---~~~~~ 53 (188)
T cd07392 1 ILAISDIHGDVE--------------------KLEA--IILKAEEADAVIVAGD-ITNFGGKEAAVEI-NLL---LAIGV 53 (188)
T ss_pred CEEEEecCCCHH--------------------HHHH--HHhhccCCCEEEECCC-ccCcCCHHHHHHH-HHH---HhcCC
Confidence 689999996531 1121 4456789999999999 5555544433333 333 34689
Q ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeCCCCCCCC
Q 016429 126 PWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYSTVP 205 (390)
Q Consensus 126 p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~~~~~~~ 205 (390)
|+++|+||||... ..+.+. +.. .... +....+.+ +.++++++.....
T Consensus 54 p~~~v~GNHD~~~------~~~~~~----------~~~-~~~~---~~~~~~~~-----------~~~~g~~~~~~~~-- 100 (188)
T cd07392 54 PVLAVPGNCDTPE------ILGLLT----------SAG-LNLH---GKVVEVGG-----------YTFVGIGGSNPTP-- 100 (188)
T ss_pred CEEEEcCCCCCHH------HHHhhh----------cCc-EecC---CCEEEECC-----------EEEEEeCCCCCCC--
Confidence 9999999999722 111110 000 0011 12223333 7889998742111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHHHHH
Q 016429 206 SVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTM 285 (390)
Q Consensus 206 ~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~l 285 (390)
. ...+.++++|++|+ +.+ .. ...++.|+++|+|+... +.+... .....++..+..+
T Consensus 101 ~-~~~~~~~~~~l~~~-~~l---~~---------~~~~~~ilv~H~pp~~~---~~d~~~-------~~~~~g~~~l~~l 156 (188)
T cd07392 101 F-NTPIELSEEEIVSD-GRL---NN---------LLAKNLILVTHAPPYGT---AVDRVS-------GGFHVGSKAIRKF 156 (188)
T ss_pred C-CCccccCHHHHHHh-hhh---hc---------cCCCCeEEEECCCCcCC---cccccC-------CCCccCCHHHHHH
Confidence 1 12456788999998 222 21 25678999999988431 100000 0012356778888
Q ss_pred HHcCCeeEEEeccCCCCCcccccCCeEEE
Q 016429 286 VAAGDVKAVFTGHDHVNDFCGRLTGIQLC 314 (390)
Q Consensus 286 ~~~~~v~~v~~GH~H~~~~~~~~~gi~~~ 314 (390)
++..++++++|||+|.......+++.+++
T Consensus 157 i~~~~~~~~l~GH~H~~~~~~~~~~~~~~ 185 (188)
T cd07392 157 IEERQPLLCICGHIHESRGVDKIGNTLVV 185 (188)
T ss_pred HHHhCCcEEEEeccccccceeeeCCeEEe
Confidence 88778999999999994323345555444
No 21
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.1e-18 Score=147.49 Aligned_cols=219 Identities=19% Similarity=0.255 Sum_probs=125.1
Q ss_pred ccCCCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChh-----hHHHH
Q 016429 38 FRQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT-----DAAKS 112 (390)
Q Consensus 38 ~~~~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~-----~~~~~ 112 (390)
.++++.++|+++.|+..... + ........+.+.-++...|||+-+||.++..+-. ...+.
T Consensus 38 ~~~dgslsflvvGDwGr~g~----~-----------nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~s 102 (336)
T KOG2679|consen 38 AKSDGSLSFLVVGDWGRRGS----F-----------NQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDS 102 (336)
T ss_pred CCCCCceEEEEEcccccCCc----h-----------hHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhh
Confidence 34679999999999983221 1 1112223444555668999999999999888642 22333
Q ss_pred HHHHHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeE----EeccCCCCCCCCc
Q 016429 113 LNAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNL----EIGGVKGSGFENK 188 (390)
Q Consensus 113 ~~~~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~----~~~~~~~~~~~~~ 188 (390)
+.++... -.++.|||.|.||||+..+... ++...+.+... ..+-|. ..|.. +....+
T Consensus 103 F~nIYT~-pSLQkpWy~vlGNHDyrGnV~A-Qls~~l~~~d~--RW~c~r--------sf~~~ae~ve~f~v~------- 163 (336)
T KOG2679|consen 103 FENIYTA-PSLQKPWYSVLGNHDYRGNVEA-QLSPVLRKIDK--RWICPR--------SFYVDAEIVEMFFVD------- 163 (336)
T ss_pred hhhcccC-cccccchhhhccCccccCchhh-hhhHHHHhhcc--ceeccc--------HHhhcceeeeeeccc-------
Confidence 3333321 1367799999999999877653 33333333221 111121 11111 000000
Q ss_pred ceEEEEEEeCCCCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhcc
Q 016429 189 SVLNLYFLDSGDYSTVPSVPGYGW--------IKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFD 260 (390)
Q Consensus 189 ~~~~l~~lds~~~~~~~~~~~~g~--------i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~ 260 (390)
...+++|+-. . +....++| +-..++.||+..|++. ..++.||..|||+.......
T Consensus 164 --~~~f~~d~~~--~-~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~S------------~a~wkiVvGHh~i~S~~~HG 226 (336)
T KOG2679|consen 164 --TTPFMDDTFT--L-CTDDVYDWRGVLPRVKYLRALLSWLEVALKAS------------RAKWKIVVGHHPIKSAGHHG 226 (336)
T ss_pred --cccchhhhee--c-ccccccccccCChHHHHHHHHHHHHHHHHHHh------------hcceEEEecccceehhhccC
Confidence 1122222210 0 11112222 3456788998887753 56799999999995521111
Q ss_pred CCCcccccCCCCCCCCCChHHHHHHHHcCCeeEEEeccCCCCCcccc-cCCeEEEecCCCC
Q 016429 261 QSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGR-LTGIQLCYGGGFG 320 (390)
Q Consensus 261 ~~~~~g~~~e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~-~~gi~~~~~~~~g 320 (390)
.-.+ =.+.+..|+++++|+++++||+|.-+.... .++|.++.+|+.+
T Consensus 227 ------~T~e-------L~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagS 274 (336)
T KOG2679|consen 227 ------PTKE-------LEKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGS 274 (336)
T ss_pred ------ChHH-------HHHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcc
Confidence 0000 014567778888999999999998654444 5788888776654
No 22
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.72 E-value=3.2e-15 Score=131.10 Aligned_cols=196 Identities=14% Similarity=0.115 Sum_probs=112.1
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCC-hhhHHHHHHHHHhHh
Q 016429 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFD-ATDAAKSLNAAFAPA 120 (390)
Q Consensus 42 ~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~-~~~~~~~~~~~l~~~ 120 (390)
..+||+.+||+|- +...++.+.+.+++.++|+||++|| +++.+ ..+.+. .+++.+
T Consensus 3 ~~~kIl~iSDiHg--------------------n~~~le~l~~~~~~~~~D~vv~~GD-l~~~g~~~~~~~---~~l~~l 58 (224)
T cd07388 3 TVRYVLATSNPKG--------------------DLEALEKLVGLAPETGADAIVLIGN-LLPKAAKSEDYA---AFFRIL 58 (224)
T ss_pred ceeEEEEEEecCC--------------------CHHHHHHHHHHHhhcCCCEEEECCC-CCCCCCCHHHHH---HHHHHH
Confidence 3579999999992 2334566666666679999999999 55554 334333 333334
Q ss_pred HhCCCCEEEEeCCCCCCCCCCHHHHHHHHH-HcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeCC
Q 016429 121 IASNIPWVAVLGNHDQESTLSREGVMKHIV-TLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSG 199 (390)
Q Consensus 121 ~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~ 199 (390)
.+.+.|+++|+||||.. +.+.+. .+.. ....|.. ..+.+ .+. .+.+ .++++.++..
T Consensus 59 ~~l~~pv~~V~GNhD~~-------v~~~l~~~~~~--~~~~p~~-~~lh~--~~~-~~~g----------~~~~~GlGGs 115 (224)
T cd07388 59 GEAHLPTFYVPGPQDAP-------LWEYLREAYNA--ELVHPEI-RNVHE--TFA-FWRG----------PYLVAGVGGE 115 (224)
T ss_pred HhcCCceEEEcCCCChH-------HHHHHHHHhcc--cccCccc-eecCC--CeE-EecC----------CeEEEEecCC
Confidence 34678999999999962 111111 1100 0000111 11222 111 1111 1578888853
Q ss_pred CCCCCCCCCCCCCCCHHHH----HHH-HHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCC
Q 016429 200 DYSTVPSVPGYGWIKPSQQ----FWF-EQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISS 274 (390)
Q Consensus 200 ~~~~~~~~~~~g~i~~~q~----~Wl-~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~ 274 (390)
.-. + ...+++|+ .|+ +..++.+.+ ....+.|+++|+|++... .
T Consensus 116 ~~~--~-----~e~sE~e~~~~~~~~~~~~l~~~~~---------~~~~~~VLv~H~PP~g~g---------~------- 163 (224)
T cd07388 116 IAD--E-----GEPEEHEALRYPAWVAEYRLKALWE---------LKDYRKVFLFHTPPYHKG---------L------- 163 (224)
T ss_pred cCC--C-----CCcCHHHHhhhhhhHHHHHHHHHHh---------CCCCCeEEEECCCCCCCC---------C-------
Confidence 211 1 22466663 675 333333332 145689999999995521 0
Q ss_pred CCCChHHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecCCC
Q 016429 275 ASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGF 319 (390)
Q Consensus 275 ~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~ 319 (390)
...++..+..+++..+.++++|||+|. .. -..++ +++.++++
T Consensus 164 ~h~GS~alr~~I~~~~P~l~i~GHih~-~~-~~~g~-t~vvNpg~ 205 (224)
T cd07388 164 NEQGSHEVAHLIKTHNPLVVLVGGKGQ-KH-ELLGA-SWVVVPGD 205 (224)
T ss_pred CccCHHHHHHHHHHhCCCEEEEcCCce-eE-EEeCC-EEEECCCc
Confidence 124678889999998899999999994 22 22333 44555444
No 23
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.72 E-value=7.2e-17 Score=133.43 Aligned_cols=80 Identities=29% Similarity=0.368 Sum_probs=54.9
Q ss_pred EEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCC
Q 016429 46 ILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNI 125 (390)
Q Consensus 46 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~i 125 (390)
|+|+||+|++........ .....++.+.+.++..+||+|+++|| +.+.+....+..+.+.++.+....+
T Consensus 1 il~isD~Hl~~~~~~~~~----------~~~~~l~~~~~~~~~~~~d~vi~~GD-l~~~~~~~~~~~~~~~~~~l~~~~~ 69 (144)
T cd07400 1 ILHLSDLHFGPERKPELL----------ALLSLLDRLLAEIKALDPDLVVITGD-LTQRGLPEEFEEAREFLDALPAPLE 69 (144)
T ss_pred CeEeCccCCCCCcchhHH----------HHHHHHHHHHHHHhccCCCEEEECCC-CCCCCCHHHHHHHHHHHHHccccCC
Confidence 689999999875432100 01111344666777789999999999 5555555556667777776644446
Q ss_pred CEEEEeCCCCC
Q 016429 126 PWVAVLGNHDQ 136 (390)
Q Consensus 126 p~~~v~GNHD~ 136 (390)
|+++++||||.
T Consensus 70 ~~~~v~GNHD~ 80 (144)
T cd07400 70 PVLVVPGNHDV 80 (144)
T ss_pred cEEEeCCCCeE
Confidence 99999999995
No 24
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.72 E-value=1.3e-15 Score=142.71 Aligned_cols=129 Identities=17% Similarity=0.151 Sum_probs=72.4
Q ss_pred EEEEEEeCCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCC-eEEEEecChhhhhhccCCCccc
Q 016429 191 LNLYFLDSGDYSTV---PSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAP-GLVYFHIPLPEFAYFDQSNFTG 266 (390)
Q Consensus 191 ~~l~~lds~~~~~~---~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~-~iv~~H~P~~~~~~~~~~~~~g 266 (390)
+++|+|||..+... ++ ...|.++++|++||+++|++.. ...+ +|++.|+|+....... +..
T Consensus 305 lrvIvLDSt~~~~~~s~pG-~~~G~Ld~eQLaWLe~~La~a~-----------a~~p~VVV~hHpPi~t~gi~~---md~ 369 (492)
T TIGR03768 305 LKVIVLDDTQSEHDGSHDI-HGHGSLDAKRWDWLKAELARGQ-----------ADGQLMIIAAHIPIAVSPIGS---EME 369 (492)
T ss_pred eEEEEECCCccccccCCCC-CcceeeCHHHHHHHHHHHHhCc-----------CCCceEEEEeCCCcccCCccc---hhh
Confidence 59999999754422 12 2368899999999999988642 2335 5555555664311100 000
Q ss_pred cc--CCCCCCCCCCh---HHHHHHHH-cCCeeEEEeccCCCCCccccc---------CCeEEEecCCCCCCCCCCCCCCc
Q 016429 267 VR--QEGISSASVNS---GFFTTMVA-AGDVKAVFTGHDHVNDFCGRL---------TGIQLCYGGGFGYHAYGKAGWER 331 (390)
Q Consensus 267 ~~--~e~~~~~~~~~---~~~~~l~~-~~~v~~v~~GH~H~~~~~~~~---------~gi~~~~~~~~g~~~~~~~~~~~ 331 (390)
.+ .-....+..+. ..+..+++ +++|.++||||.|.+ ....+ .|.|-+-..+ ..+|+.
T Consensus 370 w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn-~v~a~~~p~~~~pe~gFWeveTaS-------l~DfPQ 441 (492)
T TIGR03768 370 WWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLN-TVKAFPSPDPARPEYGFWQVETAS-------LRDFPQ 441 (492)
T ss_pred hccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccc-cccccCCCCCCCCcCceEEEeehh-------hccchh
Confidence 00 00000011122 24455554 458999999999985 22211 3455443322 134788
Q ss_pred eeEEEEEeccc
Q 016429 332 RARVVVASLEK 342 (390)
Q Consensus 332 g~rv~ei~~~~ 342 (390)
-+|+|||..+.
T Consensus 442 q~R~~Ei~~n~ 452 (492)
T TIGR03768 442 QFRTFEIYLNS 452 (492)
T ss_pred hceEEEEEeCC
Confidence 99999998543
No 25
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.71 E-value=9.5e-18 Score=142.71 Aligned_cols=79 Identities=27% Similarity=0.412 Sum_probs=52.2
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
|||+++||+|++.... .. ....+.......++|+||++||++......................
T Consensus 1 ~ri~~isD~H~~~~~~---------------~~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 64 (200)
T PF00149_consen 1 MRILVISDLHGGYDDD---------------SD-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNP 64 (200)
T ss_dssp EEEEEEEBBTTTHHHH---------------CH-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCCcch---------------hH-HHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhc
Confidence 7999999999875321 01 2355566666789999999999665554433222221123334457
Q ss_pred CCCEEEEeCCCCCCC
Q 016429 124 NIPWVAVLGNHDQES 138 (390)
Q Consensus 124 ~ip~~~v~GNHD~~~ 138 (390)
.+|+++++||||...
T Consensus 65 ~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 65 KIPVYFILGNHDYYS 79 (200)
T ss_dssp TTTEEEEE-TTSSHH
T ss_pred cccccccccccccce
Confidence 999999999999954
No 26
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.71 E-value=9.7e-17 Score=142.71 Aligned_cols=90 Identities=23% Similarity=0.299 Sum_probs=58.6
Q ss_pred EEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCC-hhhHHHHHHHHHhHhHhC
Q 016429 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFD-ATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 45 ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~-~~~~~~~~~~~l~~~~~~ 123 (390)
||+|+||+|++......... .+ ......+++.+.+.+.+.+||+||++||++.... .......+.+.+..+...
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRD---RR--REDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEA 75 (223)
T ss_pred CeEEeccccCCccccCcCcc---cc--hHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHC
Confidence 68999999999654321100 00 0012344566666667789999999999555432 223344556666665446
Q ss_pred CCCEEEEeCCCCCCCC
Q 016429 124 NIPWVAVLGNHDQEST 139 (390)
Q Consensus 124 ~ip~~~v~GNHD~~~~ 139 (390)
++|+++++||||....
T Consensus 76 ~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 76 GIPVFIIAGNHDSPSR 91 (223)
T ss_pred CCCEEEecCCCCCccc
Confidence 8999999999998654
No 27
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.70 E-value=4.5e-15 Score=135.50 Aligned_cols=80 Identities=28% Similarity=0.362 Sum_probs=54.7
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhH
Q 016429 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAI 121 (390)
Q Consensus 42 ~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~ 121 (390)
..|||+++||+|++... ....++.+.+.+++++||+|+++||++.... ....+.+.+.++.+.
T Consensus 48 ~~~rI~~lSDlH~~~~~----------------~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~-~~~~~~~~~~L~~L~ 110 (271)
T PRK11340 48 APFKILFLADLHYSRFV----------------PLSLISDAIALGIEQKPDLILLGGDYVLFDM-PLNFSAFSDVLSPLA 110 (271)
T ss_pred CCcEEEEEcccCCCCcC----------------CHHHHHHHHHHHHhcCCCEEEEccCcCCCCc-cccHHHHHHHHHHHh
Confidence 46999999999986421 1223455667777899999999999654221 222234445565553
Q ss_pred hCCCCEEEEeCCCCCCCC
Q 016429 122 ASNIPWVAVLGNHDQEST 139 (390)
Q Consensus 122 ~~~ip~~~v~GNHD~~~~ 139 (390)
...|+++|+||||+...
T Consensus 111 -~~~pv~~V~GNHD~~~~ 127 (271)
T PRK11340 111 -ECAPTFACFGNHDRPVG 127 (271)
T ss_pred -hcCCEEEecCCCCcccC
Confidence 35799999999998643
No 28
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.67 E-value=1.7e-16 Score=134.44 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=41.3
Q ss_pred CCeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecC
Q 016429 243 APGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGG 317 (390)
Q Consensus 243 ~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~ 317 (390)
+++|+++|||+......+. ....... ......+..+++.++|++++|||+|.+ .....+|+.++.++
T Consensus 97 ~~~vv~~HhpP~~~~~~~~------~~~~~~~-~~~~~~l~~~~~~~~v~~~i~GH~H~~-~~~~~~g~~~~~np 163 (166)
T cd07404 97 GKTVVVTHHAPSPLSLAPQ------YGDSLVN-AAFAVDLDDLILADPIDLWIHGHTHFN-FDYRIGGTRVLSNQ 163 (166)
T ss_pred CCEEEEeCCCCCccccCcc------ccCCCcc-hhhhhccHhHHhhcCCCEEEECCcccc-ceEEECCEEEEecC
Confidence 6899999998854221110 0001000 011233566667788999999999995 55667888866554
No 29
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.61 E-value=6.6e-14 Score=133.12 Aligned_cols=89 Identities=24% Similarity=0.359 Sum_probs=57.1
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhh--HHHHHHHHHhH
Q 016429 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATD--AAKSLNAAFAP 119 (390)
Q Consensus 42 ~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~--~~~~~~~~l~~ 119 (390)
+.|||+|+||+|+|.......+. -....+++.+.+.+.++++|+||++|| +++...+. ....+.+.+..
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~--------~D~~~~f~eil~~a~~~~vD~VLiaGD-LFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRG--------DDSWNTFEEVLQIAKEQDVDMILLGGD-LFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhh--------hhHHHHHHHHHHHHHHcCCCEEEECCc-cCCCCCCCHHHHHHHHHHHHH
Confidence 57999999999998643221110 011235566666777889999999999 66665443 22222233332
Q ss_pred h---------------------------------HhCCCCEEEEeCCCCCCCC
Q 016429 120 A---------------------------------IASNIPWVAVLGNHDQEST 139 (390)
Q Consensus 120 ~---------------------------------~~~~ip~~~v~GNHD~~~~ 139 (390)
. ...++|+++|.||||....
T Consensus 73 ~~~g~~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~ 125 (405)
T TIGR00583 73 YCLGDKPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSG 125 (405)
T ss_pred hhccCCccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCccc
Confidence 0 0147999999999998654
No 30
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.60 E-value=1.5e-14 Score=128.58 Aligned_cols=80 Identities=29% Similarity=0.299 Sum_probs=55.6
Q ss_pred CeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHh
Q 016429 43 EFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (390)
Q Consensus 43 ~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~ 122 (390)
.|||+++||+|++... ....++.+.+.+++++||+|+++||++..... .. ..+.+.++.+ .
T Consensus 1 ~~~i~~~sDlH~~~~~----------------~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~-~~-~~~~~~l~~l-~ 61 (223)
T cd07385 1 GLRIAHLSDLHLGPFV----------------SRERLERLVEKINALKPDLVVLTGDLVDGSVD-VL-ELLLELLKKL-K 61 (223)
T ss_pred CCEEEEEeecCCCccC----------------CHHHHHHHHHHHhccCCCEEEEcCcccCCcch-hh-HHHHHHHhcc-C
Confidence 4899999999987542 12244666777777899999999995554432 21 3344455543 3
Q ss_pred CCCCEEEEeCCCCCCCCCC
Q 016429 123 SNIPWVAVLGNHDQESTLS 141 (390)
Q Consensus 123 ~~ip~~~v~GNHD~~~~~~ 141 (390)
..+|+++++||||+.....
T Consensus 62 ~~~~v~~v~GNHD~~~~~~ 80 (223)
T cd07385 62 APLGVYAVLGNHDYYSGDE 80 (223)
T ss_pred CCCCEEEECCCcccccCch
Confidence 5689999999999866543
No 31
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.58 E-value=1.5e-13 Score=131.74 Aligned_cols=86 Identities=19% Similarity=0.291 Sum_probs=58.2
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhH--HHHHHHHHhHhH
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDA--AKSLNAAFAPAI 121 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~--~~~~~~~l~~~~ 121 (390)
|||+|+||+|+|....+... .. .....++.+.+.+.+++||+||++|| +++...+.. ...+.+++..+.
T Consensus 1 mkilh~SDlHlG~~~~~~~~--~~------~~~~~l~~l~~~i~~~~~D~viIaGD-ifD~~~p~~~a~~~~~~~l~~L~ 71 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSR--AA------EHQAFLDWLLEQVQEHQVDAIIVAGD-IFDTGSPPSYARELYNRFVVNLQ 71 (407)
T ss_pred CEEEEEcccCCCCcccCccc--HH------HHHHHHHHHHHHHHhcCCCEEEECCc-cccCCCCcHHHHHHHHHHHHHHH
Confidence 79999999999854221100 00 01234566777788899999999999 565543322 233455666666
Q ss_pred hCCCCEEEEeCCCCCCC
Q 016429 122 ASNIPWVAVLGNHDQES 138 (390)
Q Consensus 122 ~~~ip~~~v~GNHD~~~ 138 (390)
+.++|+++|+||||...
T Consensus 72 ~~~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 72 QTGCQLVVLAGNHDSVA 88 (407)
T ss_pred hcCCcEEEEcCCCCChh
Confidence 67899999999999854
No 32
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.57 E-value=2.6e-13 Score=130.36 Aligned_cols=294 Identities=19% Similarity=0.178 Sum_probs=157.2
Q ss_pred eccCCCCeEEEEEecccccCC----CCCCCCC--------CCc-------cccc---CC-CChhHHHHHHHHHHh-c-CC
Q 016429 37 RFRQNGEFKILQVADMHFANG----KTTPCLD--------VLP-------SQVA---GC-SDLNTTAFINRMISA-E-KP 91 (390)
Q Consensus 37 ~~~~~~~~ki~~iSDlH~~~~----~~~~~~~--------~~~-------~~~~---~~-~~~~~~~~l~~~i~~-~-~p 91 (390)
+...+..+||+|++|+|.+.. ....|.. ..| .-|+ .| ....+++.+.+.|++ . ++
T Consensus 132 p~~~~p~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~i 211 (577)
T KOG3770|consen 132 PLKNNPTFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDI 211 (577)
T ss_pred CCCCCCceeEEEeeccccCcccccCCcccccCccccccCCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 333346699999999999721 1111111 011 1122 33 344555666666654 3 38
Q ss_pred CEEEEcCCcCCCCChhh----HHHHHHHHHhHhHh--CCCCEEEEeCCCCCCCC-------CCH----HHHHH-HHHHcC
Q 016429 92 DLIVFTGDNIFGFDATD----AAKSLNAAFAPAIA--SNIPWVAVLGNHDQEST-------LSR----EGVMK-HIVTLK 153 (390)
Q Consensus 92 D~Vv~~GD~i~~~~~~~----~~~~~~~~l~~~~~--~~ip~~~v~GNHD~~~~-------~~~----~~~~~-~~~~~~ 153 (390)
|+|++|||++.....+. ..+.+.+..+.+.+ .++|+|...||||.... .+. ..+.+ +...+.
T Consensus 212 D~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~~~~wly~~~~~~W~ 291 (577)
T KOG3770|consen 212 DYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRHSQLWLYKHLAGAWS 291 (577)
T ss_pred CEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchhhhhHHHHHHHhhhh
Confidence 99999999776663321 12222222222222 58999999999998531 111 11111 112221
Q ss_pred CCccccCCCCCccccCc-cceeEEeccCCCCCCCCcceEEEEEEeCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHh
Q 016429 154 NTLSQVNPSDAHIIDGF-GNYNLEIGGVKGSGFENKSVLNLYFLDSGDYSTVP-SVPGYGWIKPSQQFWFEQTSARLQRA 231 (390)
Q Consensus 154 ~~~~~~~p~~~~~~~g~-~~y~~~~~~~~~~~~~~~~~~~l~~lds~~~~~~~-~~~~~g~i~~~q~~Wl~~~l~~l~~~ 231 (390)
.+-|.+....... +.|...+.+ +++++.||+..-.... .......-..+|++||..+|.+++.
T Consensus 292 ----~wlp~e~~~t~~kga~Y~~~~~~----------Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~- 356 (577)
T KOG3770|consen 292 ----TWLPAEAKETFLKGAYYLVLVID----------GLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAES- 356 (577)
T ss_pred ----ccCCHHHHhhhhcCcEEEEeecC----------CceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHh-
Confidence 1223322222222 344444332 2889999996432211 1111222355689999999998764
Q ss_pred hcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHHHHHHHcC--CeeEEEeccCCCCCcccccC
Q 016429 232 YMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAG--DVKAVFTGHDHVNDFCGRLT 309 (390)
Q Consensus 232 ~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~l~~~~--~v~~v~~GH~H~~~~~~~~~ 309 (390)
.+..+-++.|+|+... ...++. +.-+-.++.+. -+...|.||+|.+.+...++
T Consensus 357 ---------~GekVhil~HIPpG~~----------~c~~~w------s~~f~~iv~r~~~tI~gqf~GH~h~d~f~v~yd 411 (577)
T KOG3770|consen 357 ---------AGEKVHILGHIPPGDG----------VCLEGW------SINFYRIVNRFRSTIAGQFYGHTHIDEFRVFYD 411 (577)
T ss_pred ---------cCCEEEEEEeeCCCCc----------chhhhh------hHHHHHHHHHHHHhhhhhccccCcceeEEEEec
Confidence 6788999999999531 111111 12223333322 46689999999977655432
Q ss_pred ---CeE--EEecCCCCCCCCCCCCCCceeEEEEEecccccccCCCCcCceEEEEEccCCCCCcccceeEeecccC
Q 016429 310 ---GIQ--LCYGGGFGYHAYGKAGWERRARVVVASLEKTEKRGWGDVKSIKTWKRLDDEHLTGVDGHVLWSKTSS 379 (390)
Q Consensus 310 ---gi~--~~~~~~~g~~~~~~~~~~~g~rv~ei~~~~~~~~~~~~~~~~~tw~r~~~~~~~~~d~~~l~~~~~~ 379 (390)
+.+ +.+.+. +...|-+ -.+++|+++++... .+. ..+++||.++-....... ++.-|..+|.
T Consensus 412 e~~~~p~~v~~i~~-svtty~~--~~p~yr~y~~~~~~----~~~-~~d~~ty~~Nlt~an~~~-e~p~W~~~y~ 477 (577)
T KOG3770|consen 412 EETGHPIAVAYIGP-SVTTYYN--KNPGYRIYAVDSTI----SFS-VPDHRTYFYNLTSANLQP-ESPEWELLYT 477 (577)
T ss_pred cccCCceeeeeccc-cceehhc--cCCCceecccCccc----cee-cccceEEEEehhhhcCCC-CCCchHhhhh
Confidence 222 222211 2233322 35899999998221 122 578899999765432112 6677776664
No 33
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.53 E-value=6.9e-12 Score=106.96 Aligned_cols=211 Identities=22% Similarity=0.242 Sum_probs=118.7
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCC--CCChhhHHHHHHHHHhH
Q 016429 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIF--GFDATDAAKSLNAAFAP 119 (390)
Q Consensus 42 ~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~--~~~~~~~~~~~~~~l~~ 119 (390)
..|||+++||+|-+. ..+..+..++...++|++|++|| ++ ..+......... .++.
T Consensus 2 ~~mkil~vtDlHg~~--------------------~~~~k~~~~~~~~~~D~lviaGD-lt~~~~~~~~~~~~~~-~~e~ 59 (226)
T COG2129 2 KKMKILAVTDLHGSE--------------------DSLKKLLNAAADIRADLLVIAGD-LTYFHFGPKEVAEELN-KLEA 59 (226)
T ss_pred CcceEEEEeccccch--------------------HHHHHHHHHHhhccCCEEEEecc-eehhhcCchHHHHhhh-HHHH
Confidence 469999999999653 23355666666679999999999 55 333322222211 1555
Q ss_pred hHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeCC
Q 016429 120 AIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSG 199 (390)
Q Consensus 120 ~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~ 199 (390)
+...++|++++|||=|-. ++.+.+....- + +.+ =...+.+ ..+..+--
T Consensus 60 l~~~~~~v~avpGNcD~~------~v~~~l~~~~~-----~------v~~---~v~~i~~-----------~~~~G~Gg- 107 (226)
T COG2129 60 LKELGIPVLAVPGNCDPP------EVIDVLKNAGV-----N------VHG---RVVEIGG-----------YGFVGFGG- 107 (226)
T ss_pred HHhcCCeEEEEcCCCChH------HHHHHHHhccc-----c------ccc---ceEEecC-----------cEEEEecc-
Confidence 666899999999997752 23333332110 0 111 1111211 12222111
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCC-eEEEEecChhhhhhccCCCcccccCCCCCCCCCC
Q 016429 200 DYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAP-GLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVN 278 (390)
Q Consensus 200 ~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~-~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~ 278 (390)
+.......+..+++++ +...++.+-+. ...+ .|+.+|.|++..... ...| ....+
T Consensus 108 --sn~tp~nt~~e~~E~~---I~s~l~~~v~~---------~~~~~~Il~~HaPP~gt~~d---~~~g-------~~hvG 163 (226)
T COG2129 108 --SNPTPFNTPREFSEDE---IYSKLKSLVKK---------ADNPVNILLTHAPPYGTLLD---TPSG-------YVHVG 163 (226)
T ss_pred --cCCCCCCCccccCHHH---HHHHHHHHHhc---------ccCcceEEEecCCCCCcccc---CCCC-------ccccc
Confidence 1111111234466666 44444443321 1122 299999998653211 1111 12457
Q ss_pred hHHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecCCCCCCCCCCCCCCceeEEEEEe
Q 016429 279 SGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVVVAS 339 (390)
Q Consensus 279 ~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~~~~~~~~~g~rv~ei~ 339 (390)
+..+++++++-+..+.+|||.|. ......-|=+++.++++- + ..+|-+++++
T Consensus 164 S~~vr~~ieefqP~l~i~GHIHE-s~G~d~iG~TivVNPG~~----~----~g~yA~i~l~ 215 (226)
T COG2129 164 SKAVRKLIEEFQPLLGLHGHIHE-SRGIDKIGNTIVVNPGPL----G----EGRYALIELE 215 (226)
T ss_pred hHHHHHHHHHhCCceEEEeeecc-cccccccCCeEEECCCCc----c----CceEEEEEec
Confidence 78899999998899999999998 455555555777776651 1 2457787876
No 34
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.52 E-value=6.4e-13 Score=125.13 Aligned_cols=85 Identities=22% Similarity=0.271 Sum_probs=55.4
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCC-hh--hHHHHHHH-HHhH
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFD-AT--DAAKSLNA-AFAP 119 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~-~~--~~~~~~~~-~l~~ 119 (390)
|||+|+||+|+|...... +..+ .....++.+.+.+.+++||+||++|| +++.. .+ .....+.. ++..
T Consensus 1 MKilhiSD~HLG~~~~~~---~~~~-----~~~~~l~~ii~~a~~~~vD~VliaGD-lfD~~~~~~~~~~~~~~~~l~~~ 71 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDP---WFQN-----YQLKFIKQAIEYSKAHGITTWIQLGD-TFDVRKAITQNTMNFVREKIFDL 71 (340)
T ss_pred CeEEEEeeecCCCcCCCh---hhHH-----HHHHHHHHHHHHHHHcCCCEEEECCc-ccCCCCCCCHHHHHHHHHHHHHH
Confidence 799999999999643211 0100 01235566666677899999999999 55443 22 22223333 3444
Q ss_pred hHhCCCCEEEEeCCCCCC
Q 016429 120 AIASNIPWVAVLGNHDQE 137 (390)
Q Consensus 120 ~~~~~ip~~~v~GNHD~~ 137 (390)
+.+.++|+++++||||..
T Consensus 72 L~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 72 LKEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHHCCCeEEEEccCCCcc
Confidence 555789999999999974
No 35
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=1.3e-12 Score=117.99 Aligned_cols=86 Identities=27% Similarity=0.377 Sum_probs=59.4
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhh--HHHHHHHHHhHhH
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATD--AAKSLNAAFAPAI 121 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~--~~~~~~~~l~~~~ 121 (390)
|||+|+||+|++.......+ .. .....++.+.+.+.+++||+|+++|| +++...+. ....+.+.+..+.
T Consensus 1 mkilh~SD~Hlg~~~~~~~~--~~------~~~~~l~~l~~~~~~~~~D~lli~GD-i~d~~~p~~~~~~~~~~~l~~l~ 71 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSR--LA------EQKAFLDDLLEFAKAEQIDALLVAGD-VFDTANPPAEAQELFNAFFRNLS 71 (253)
T ss_pred CEEEEEhhhcCCCccCCCCh--HH------HHHHHHHHHHHHHHHcCCCEEEECCc-cCCCCCCCHHHHHHHHHHHHHHH
Confidence 79999999999865432100 00 01235566777777899999999999 55554332 3344566777666
Q ss_pred hCC-CCEEEEeCCCCCCC
Q 016429 122 ASN-IPWVAVLGNHDQES 138 (390)
Q Consensus 122 ~~~-ip~~~v~GNHD~~~ 138 (390)
+.+ +|+++++||||...
T Consensus 72 ~~~~i~v~~i~GNHD~~~ 89 (253)
T TIGR00619 72 DANPIPIVVISGNHDSAQ 89 (253)
T ss_pred hcCCceEEEEccCCCChh
Confidence 666 99999999999854
No 36
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.49 E-value=5.7e-13 Score=111.09 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=49.0
Q ss_pred EEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChh--hHHHHHHHHHhHhHh--
Q 016429 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT--DAAKSLNAAFAPAIA-- 122 (390)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~--~~~~~~~~~l~~~~~-- 122 (390)
+++||+|++....... ++ ++ ..+....+.+.++++..+||+||++||++...... ..+..+...+..+..
T Consensus 1 ~~isD~HL~~~~~~~~---l~-~~--~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (156)
T cd08165 1 MFLADTHLLGSILGHW---LD-KL--RREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHP 74 (156)
T ss_pred CccccchhcCCcccHH---HH-HH--hhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccC
Confidence 4689999964332111 00 00 01233455778888889999999999955433211 112222222222222
Q ss_pred CCCCEEEEeCCCCC
Q 016429 123 SNIPWVAVLGNHDQ 136 (390)
Q Consensus 123 ~~ip~~~v~GNHD~ 136 (390)
.++|+++|+||||.
T Consensus 75 ~~~~i~~v~GNHD~ 88 (156)
T cd08165 75 PDLPLHVVVGNHDI 88 (156)
T ss_pred CCCeEEEEcCCCCc
Confidence 36899999999997
No 37
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.47 E-value=9.4e-13 Score=126.90 Aligned_cols=88 Identities=28% Similarity=0.429 Sum_probs=62.1
Q ss_pred eEEEEEecccccC-CCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChh--hHHHHHHHHHhHh
Q 016429 44 FKILQVADMHFAN-GKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT--DAAKSLNAAFAPA 120 (390)
Q Consensus 44 ~ki~~iSDlH~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~--~~~~~~~~~l~~~ 120 (390)
|||+|+||+|+|. ..... .+. -...+++..+.+.+.++++|+||++|| +++...+ .....+.+.+..+
T Consensus 1 mkilHtSD~HLG~~~~~~~------~r~--~d~~~~f~~~l~~a~~~~vD~vliAGD-lFd~~~Ps~~a~~~~~~~l~~l 71 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLP------SRL--EDQKKAFDELLEIAKEEKVDFVLIAGD-LFDTNNPSPRALKLFLEALRRL 71 (390)
T ss_pred CeeEEecccccchhhccCc------cch--HHHHHHHHHHHHHHHHccCCEEEEccc-cccCCCCCHHHHHHHHHHHHHh
Confidence 7999999999994 22111 000 012334555566666789999999999 6766543 5556677778877
Q ss_pred HhCCCCEEEEeCCCCCCCCC
Q 016429 121 IASNIPWVAVLGNHDQESTL 140 (390)
Q Consensus 121 ~~~~ip~~~v~GNHD~~~~~ 140 (390)
...++|+++++||||.....
T Consensus 72 ~~~~Ipv~~I~GNHD~~~~~ 91 (390)
T COG0420 72 KDAGIPVVVIAGNHDSPSRL 91 (390)
T ss_pred ccCCCcEEEecCCCCchhcc
Confidence 77899999999999986543
No 38
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.45 E-value=1.2e-12 Score=111.10 Aligned_cols=73 Identities=26% Similarity=0.380 Sum_probs=47.1
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHH------------
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAK------------ 111 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~------------ 111 (390)
=||+.+||+| .+.+.++.+..++.+.+||+||++||++-.....+.|.
T Consensus 6 ~kilA~s~~~--------------------g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~ 65 (255)
T PF14582_consen 6 RKILAISNFR--------------------GDFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKS 65 (255)
T ss_dssp -EEEEEE--T--------------------T-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----TH
T ss_pred hhheeecCcc--------------------hHHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchh
Confidence 4799999998 24567788899999999999999999555543333222
Q ss_pred -----------HHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 112 -----------SLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 112 -----------~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
.+.+++..+...++|+++||||||.
T Consensus 66 ~i~~e~~~~~e~~~~ff~~L~~~~~p~~~vPG~~Da 101 (255)
T PF14582_consen 66 EINEEECYDSEALDKFFRILGELGVPVFVVPGNMDA 101 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-SEEEEE--TTS-
T ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcEEEecCCCCc
Confidence 3446666666689999999999997
No 39
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.45 E-value=1.7e-12 Score=108.51 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=50.9
Q ss_pred CCeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecCCCCCC
Q 016429 243 APGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYH 322 (390)
Q Consensus 243 ~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~ 322 (390)
...++++|.+..... .....+..++...+++++++||.|. ......+++.+++.|+.+..
T Consensus 81 ~~~i~~~H~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~GH~H~-~~~~~~~~~~~~~~Gs~~~~ 140 (156)
T PF12850_consen 81 GFKILLSHGHPYDVQ-------------------WDPAELREILSRENVDLVLHGHTHR-PQVFKIGGIHVINPGSIGGP 140 (156)
T ss_dssp TEEEEEESSTSSSST-------------------TTHHHHHHHHHHTTSSEEEESSSSS-EEEEEETTEEEEEE-GSSS-
T ss_pred CCeEEEECCCCcccc-------------------cChhhhhhhhcccCCCEEEcCCccc-ceEEEECCEEEEECCcCCCC
Confidence 468899998653310 1334455666677899999999999 45555788998888887655
Q ss_pred CCCCCCCCceeEEEEEe
Q 016429 323 AYGKAGWERRARVVVAS 339 (390)
Q Consensus 323 ~~~~~~~~~g~rv~ei~ 339 (390)
..+. +++|-+++++
T Consensus 141 ~~~~---~~~~~i~~~~ 154 (156)
T PF12850_consen 141 RHGD---QSGYAILDIE 154 (156)
T ss_dssp SSSS---SEEEEEEEET
T ss_pred CCCC---CCEEEEEEEe
Confidence 4432 6888888875
No 40
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.45 E-value=2.2e-11 Score=107.14 Aligned_cols=66 Identities=24% Similarity=0.274 Sum_probs=44.6
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
+||+++||+|.... ....+.++..+||+|+++||++ +.. . +.+..+.+.
T Consensus 1 ~rIa~isDiHg~~~----------------------~~~~~~l~~~~pD~Vl~~GDi~-~~~----~----~~~~~l~~l 49 (238)
T cd07397 1 LRIAIVGDVHGQWD----------------------LEDIKALHLLQPDLVLFVGDFG-NES----V----QLVRAISSL 49 (238)
T ss_pred CEEEEEecCCCCch----------------------HHHHHHHhccCCCEEEECCCCC-cCh----H----HHHHHHHhC
Confidence 68999999994321 1113456678999999999954 221 1 222333345
Q ss_pred CCCEEEEeCCCCCCCCC
Q 016429 124 NIPWVAVLGNHDQESTL 140 (390)
Q Consensus 124 ~ip~~~v~GNHD~~~~~ 140 (390)
..|+++|+||||.....
T Consensus 50 ~~p~~~V~GNHD~~~~~ 66 (238)
T cd07397 50 PLPKAVILGNHDAWYDA 66 (238)
T ss_pred CCCeEEEcCCCcccccc
Confidence 68999999999987653
No 41
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.44 E-value=2.7e-12 Score=115.35 Aligned_cols=77 Identities=25% Similarity=0.334 Sum_probs=51.4
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHH--hcCCCEEEEcCCcCCC---CC-hhhHHHHHHHHH
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS--AEKPDLIVFTGDNIFG---FD-ATDAAKSLNAAF 117 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~--~~~pD~Vv~~GD~i~~---~~-~~~~~~~~~~~l 117 (390)
|||+++||+|++.... ...+.+.+.++ +.+||+|+++||++.. +. .......+.+.+
T Consensus 1 M~i~~iSDlHl~~~~~-----------------~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l 63 (241)
T PRK05340 1 MPTLFISDLHLSPERP-----------------AITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAAL 63 (241)
T ss_pred CcEEEEeecCCCCCCh-----------------hHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHH
Confidence 6899999999986421 11233444443 3689999999995532 11 112234455666
Q ss_pred hHhHhCCCCEEEEeCCCCCC
Q 016429 118 APAIASNIPWVAVLGNHDQE 137 (390)
Q Consensus 118 ~~~~~~~ip~~~v~GNHD~~ 137 (390)
+.+.+.++|+++++||||+.
T Consensus 64 ~~l~~~g~~v~~v~GNHD~~ 83 (241)
T PRK05340 64 KALSDSGVPCYFMHGNRDFL 83 (241)
T ss_pred HHHHHcCCeEEEEeCCCchh
Confidence 66666789999999999973
No 42
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.43 E-value=6.4e-12 Score=105.44 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=37.7
Q ss_pred HHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecCCCCCCCCCCCCCCceeEEEEEe
Q 016429 281 FFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVVVAS 339 (390)
Q Consensus 281 ~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~~~~~~~~~g~rv~ei~ 339 (390)
.+..+....+++++++||+|. ......+++.++..|+.+-...+ -.++|-+++++
T Consensus 97 ~l~~~~~~~~~d~vi~GHtH~-~~~~~~~~~~~iNpGs~~~~~~~---~~~~~~il~~~ 151 (158)
T TIGR00040 97 VLEYLAKELGVDVLIFGHTHI-PVAEELRGILLINPGSLTGPRNG---NTPSYAILDVD 151 (158)
T ss_pred HHHHHHhccCCCEEEECCCCC-CccEEECCEEEEECCccccccCC---CCCeEEEEEec
Confidence 345566666789999999999 45566788888877765522111 14578888876
No 43
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.40 E-value=3.9e-12 Score=103.39 Aligned_cols=198 Identities=21% Similarity=0.222 Sum_probs=103.4
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
|+|..|||+|+..+.+.+..- +.+.|..+. .+..+.....+ ..-|.|++.||+-+...-++..+.+ +.+. ++
T Consensus 1 M~iyaiaDLHLa~~~pKpM~v-FGe~W~gh~-ekI~k~W~~~v--~~eDiVllpGDiSWaM~l~ea~~Dl-~~i~---~L 72 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEV-FGEPWSGHH-EKIKKHWRSKV--SPEDIVLLPGDISWAMRLEEAEEDL-RFIG---DL 72 (230)
T ss_pred CceeeeehhhHhhCCCCceee-cCCcccCch-HHHHHHHHhcC--ChhhEEEecccchhheechhhhhhh-hhhh---cC
Confidence 678899999999876544322 223333221 12222222222 2348999999976766555544444 2333 35
Q ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeCCCCCC
Q 016429 124 NIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYST 203 (390)
Q Consensus 124 ~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~~~~~ 203 (390)
+-.-+.+.||||+++. +...+.+.+ |..+...+ ......||. +.| .+ .-||....
T Consensus 73 PG~K~m~rGNHDYWw~-s~skl~n~l---p~~l~~~n-----~~f~l~n~a--I~G-----------~R--gW~s~~~~- 127 (230)
T COG1768 73 PGTKYMIRGNHDYWWS-SISKLNNAL---PPILFYLN-----NGFELLNYA--IVG-----------VR--GWDSPSFD- 127 (230)
T ss_pred CCcEEEEecCCccccc-hHHHHHhhc---CchHhhhc-----cceeEeeEE--EEE-----------ee--cccCCCCC-
Confidence 5667889999999887 444444432 21111100 011112322 222 12 22331110
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHh-hcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHH
Q 016429 204 VPSVPGYGWIKPSQQFWFEQTSARLQRA-YMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFF 282 (390)
Q Consensus 204 ~~~~~~~g~i~~~q~~Wl~~~l~~l~~~-~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~ 282 (390)
+.-++++.-.-+.+++.+++.. ..+. .......|+|+|+|+.... + ....+
T Consensus 128 ------~e~~te~Deki~~RE~~RLrlsa~a~l---~k~~~~fivM~HYPP~s~~-------------~------t~~~~ 179 (230)
T COG1768 128 ------SEPLTEQDEKIFLREIGRLRLSADAAL---PKGVSKFIVMTHYPPFSDD-------------G------TPGPF 179 (230)
T ss_pred ------cCccchhHHHHHHHHHHHHHHHHHHhc---ccCcCeEEEEEecCCCCCC-------------C------CCcch
Confidence 1114444444444444444431 1110 1245679999999885411 0 11335
Q ss_pred HHHHHcCCeeEEEeccCCCC
Q 016429 283 TTMVAAGDVKAVFTGHDHVN 302 (390)
Q Consensus 283 ~~l~~~~~v~~v~~GH~H~~ 302 (390)
.+++++++|..++.||.|..
T Consensus 180 sevlee~rv~~~lyGHlHgv 199 (230)
T COG1768 180 SEVLEEGRVSKCLYGHLHGV 199 (230)
T ss_pred HHHHhhcceeeEEeeeccCC
Confidence 67777889999999999984
No 44
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.38 E-value=6.3e-11 Score=101.00 Aligned_cols=57 Identities=12% Similarity=-0.016 Sum_probs=37.4
Q ss_pred HHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecCCCCCCCCC-CCCCCceeEEEEEe
Q 016429 282 FTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYG-KAGWERRARVVVAS 339 (390)
Q Consensus 282 ~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~~~-~~~~~~g~rv~ei~ 339 (390)
+..+.+..+++++++||+|. ......+|+.++..|+.+...-+ .....+.|-+++++
T Consensus 98 ~~~~~~~~~~dvii~GHTH~-p~~~~~~g~~viNPGSv~~~~~~~~~~~~~syail~~~ 155 (178)
T cd07394 98 LAALQRQLDVDILISGHTHK-FEAFEHEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQ 155 (178)
T ss_pred HHHHHHhcCCCEEEECCCCc-ceEEEECCEEEEECCCCCCCCCCCCCCCCCeEEEEEec
Confidence 45555556789999999999 46667789888888877632111 01113467777765
No 45
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.37 E-value=1.5e-11 Score=100.33 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=40.1
Q ss_pred EEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCC
Q 016429 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASN 124 (390)
Q Consensus 45 ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ 124 (390)
||+++||+|.... .++..++|+||++|| +...+....++.+.+.+.. .+
T Consensus 1 ~i~~isD~H~~~~---------------------------~~~~~~~D~vi~~GD-~~~~~~~~~~~~~~~~l~~---~~ 49 (135)
T cd07379 1 RFVCISDTHSRHR---------------------------TISIPDGDVLIHAGD-LTERGTLEELQKFLDWLKS---LP 49 (135)
T ss_pred CEEEEeCCCCCCC---------------------------cCcCCCCCEEEECCC-CCCCCCHHHHHHHHHHHHh---CC
Confidence 5899999995421 123468999999999 4444443333344444443 34
Q ss_pred CC-EEEEeCCCCC
Q 016429 125 IP-WVAVLGNHDQ 136 (390)
Q Consensus 125 ip-~~~v~GNHD~ 136 (390)
.| +++|+||||.
T Consensus 50 ~~~~~~v~GNHD~ 62 (135)
T cd07379 50 HPHKIVIAGNHDL 62 (135)
T ss_pred CCeEEEEECCCCC
Confidence 44 5789999996
No 46
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.33 E-value=1.3e-11 Score=112.31 Aligned_cols=82 Identities=33% Similarity=0.382 Sum_probs=56.7
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHh
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPA 120 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~ 120 (390)
...+||+|+||+|+.... .....+...+..+.||+|+++||+++. ........+.+.++++
T Consensus 42 ~~~~~iv~lSDlH~~~~~------------------~~~~~~~~~i~~~~~DlivltGD~~~~-~~~~~~~~~~~~L~~L 102 (284)
T COG1408 42 LQGLKIVQLSDLHSLPFR------------------EEKLALLIAIANELPDLIVLTGDYVDG-DRPPGVAALALFLAKL 102 (284)
T ss_pred cCCeEEEEeehhhhchhh------------------HHHHHHHHHHHhcCCCEEEEEeeeecC-CCCCCHHHHHHHHHhh
Confidence 356889999999987532 112333444456788999999997775 2233344566677765
Q ss_pred HhCCCCEEEEeCCCCCCCCCCH
Q 016429 121 IASNIPWVAVLGNHDQESTLSR 142 (390)
Q Consensus 121 ~~~~ip~~~v~GNHD~~~~~~~ 142 (390)
. ...+++++.||||+......
T Consensus 103 ~-~~~gv~av~GNHd~~~~~~~ 123 (284)
T COG1408 103 K-APLGVFAVLGNHDYGVDRSN 123 (284)
T ss_pred h-ccCCEEEEeccccccccccc
Confidence 3 57789999999999776544
No 47
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.32 E-value=1.9e-11 Score=103.55 Aligned_cols=91 Identities=23% Similarity=0.252 Sum_probs=53.9
Q ss_pred EEEecccccCCCCCCCCCCCcc-cccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChh--hHHHHHHHHHhHhHh-
Q 016429 47 LQVADMHFANGKTTPCLDVLPS-QVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT--DAAKSLNAAFAPAIA- 122 (390)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~--~~~~~~~~~l~~~~~- 122 (390)
+.+||+|++.........+.-. -.....+...++.+..+++..+||+||++||++.+.... ..+....+.+..+..
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFL 80 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcc
Confidence 4689999997654322111000 000113445667788888889999999999955443221 222323333333221
Q ss_pred -----CCCCEEEEeCCCCCC
Q 016429 123 -----SNIPWVAVLGNHDQE 137 (390)
Q Consensus 123 -----~~ip~~~v~GNHD~~ 137 (390)
.++|+++|+||||..
T Consensus 81 ~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 81 PSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred cccccCCceEEEECCccccC
Confidence 278999999999983
No 48
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.31 E-value=2.3e-11 Score=108.63 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=47.8
Q ss_pred EEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh--cCCCEEEEcCCcCCC---C-ChhhHHHHHHHHHhHh
Q 016429 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA--EKPDLIVFTGDNIFG---F-DATDAAKSLNAAFAPA 120 (390)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~--~~pD~Vv~~GD~i~~---~-~~~~~~~~~~~~l~~~ 120 (390)
+++||+|++.... ...+.+.+.+.+ .+||+|+++||++.. . ......+.+.+.++.+
T Consensus 2 ~~iSDlHl~~~~~-----------------~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L 64 (231)
T TIGR01854 2 LFISDLHLSPERP-----------------DITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQV 64 (231)
T ss_pred eEEEecCCCCCCh-----------------hHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHH
Confidence 7999999986421 111333333333 389999999995542 1 1122334455666666
Q ss_pred HhCCCCEEEEeCCCCCC
Q 016429 121 IASNIPWVAVLGNHDQE 137 (390)
Q Consensus 121 ~~~~ip~~~v~GNHD~~ 137 (390)
.+.++|+++|+||||+.
T Consensus 65 ~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 65 SDQGVPCYFMHGNRDFL 81 (231)
T ss_pred HHCCCeEEEEcCCCchh
Confidence 56689999999999984
No 49
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.31 E-value=1e-10 Score=97.73 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=36.1
Q ss_pred HHHcCCeeEEEeccCCCCCcccccCCeEEEecCCCCCCCCCCCCCCceeEEEEEe
Q 016429 285 MVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVVVAS 339 (390)
Q Consensus 285 l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~~~~~~~~~g~rv~ei~ 339 (390)
+....+++++++||+|.. .....+++.+++.|+.+.... .-.+++-+++++
T Consensus 97 ~~~~~~~d~vi~GHtH~~-~~~~~~~~~~inpGs~~~~~~---~~~~~~~i~~~~ 147 (155)
T cd00841 97 LAKEGGADVVLYGHTHIP-VIEKIGGVLLLNPGSLSLPRG---GGPPTYAILEID 147 (155)
T ss_pred hhhhcCCCEEEECcccCC-ccEEECCEEEEeCCCccCcCC---CCCCeEEEEEec
Confidence 344456899999999994 556678888888877663221 124688888886
No 50
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.30 E-value=2.9e-11 Score=102.95 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=50.9
Q ss_pred EEEecccccCCCCCCCC-CCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHh---HhH-
Q 016429 47 LQVADMHFANGKTTPCL-DVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFA---PAI- 121 (390)
Q Consensus 47 ~~iSDlH~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~---~~~- 121 (390)
+.+||+|+-........ .++. ++ ..|....+....+++..+||+||++||++....... .+.+.+.+. ++.
T Consensus 1 llvADPqllg~~~~~~~~~~~~-~~--~~D~yl~r~~~~a~~~l~PD~Vi~lGDL~D~G~~~~-~~e~~e~l~Rf~~If~ 76 (195)
T cd08166 1 LLVADPQILGYQNENFGLGWIA-RW--DSDRYLKKTYHLALNFVQPDIVIFLGDLMDEGSIAN-DDEYYSYVQRFINIFE 76 (195)
T ss_pred CcccCccccCCCCCCccccHHH-HH--HHHHHHHHHHHHHHhccCCCEEEEeccccCCCCCCC-HHHHHHHHHHHHHHhc
Confidence 46899999765432100 0110 11 134445566777778889999999999555443221 112222222 221
Q ss_pred -hCCCCEEEEeCCCCCC
Q 016429 122 -ASNIPWVAVLGNHDQE 137 (390)
Q Consensus 122 -~~~ip~~~v~GNHD~~ 137 (390)
..++|+++||||||.+
T Consensus 77 ~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 77 VPNGTKIIYLPGDNDIG 93 (195)
T ss_pred CCCCCcEEEECCCCCcC
Confidence 3578999999999984
No 51
>PRK09453 phosphodiesterase; Provisional
Probab=99.28 E-value=1.7e-10 Score=99.19 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=46.4
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCCh---hhHHHHHHHHHhHh
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDA---TDAAKSLNAAFAPA 120 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~---~~~~~~~~~~l~~~ 120 (390)
|||+++||+|... ..++.+.+.+++.++|.|+++||++..... +..+ ...+.++.+
T Consensus 1 mri~viSD~Hg~~--------------------~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~-~~~~~~~~l 59 (182)
T PRK09453 1 MKLMFASDTHGSL--------------------PATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGY-APKKVAELL 59 (182)
T ss_pred CeEEEEEeccCCH--------------------HHHHHHHHHHHhcCCCEEEEcccccccCcCCCCcccc-CHHHHHHHH
Confidence 7999999999321 124556677777899999999995543211 0000 011233333
Q ss_pred HhCCCCEEEEeCCCCC
Q 016429 121 IASNIPWVAVLGNHDQ 136 (390)
Q Consensus 121 ~~~~ip~~~v~GNHD~ 136 (390)
.+.+.++++|+||||.
T Consensus 60 ~~~~~~v~~V~GNhD~ 75 (182)
T PRK09453 60 NAYADKIIAVRGNCDS 75 (182)
T ss_pred HhcCCceEEEccCCcc
Confidence 3456799999999996
No 52
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.25 E-value=1.4e-11 Score=106.27 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=51.0
Q ss_pred EEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCC--CEEEEcCCcCCCC----ChhhHHHHHHHHHhHh
Q 016429 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKP--DLIVFTGDNIFGF----DATDAAKSLNAAFAPA 120 (390)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p--D~Vv~~GD~i~~~----~~~~~~~~~~~~l~~~ 120 (390)
++|||+|++...+ ...+.+.+.++.+.+ |.+.+.||++..- ..++..+...+.+..+
T Consensus 1 lFISDlHL~~~~p-----------------~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~ 63 (237)
T COG2908 1 LFISDLHLGPKRP-----------------ALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL 63 (237)
T ss_pred CeeeccccCCCCc-----------------HHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHH
Confidence 4799999995432 233667777776655 9999999944322 1233445555556666
Q ss_pred HhCCCCEEEEeCCCCC
Q 016429 121 IASNIPWVAVLGNHDQ 136 (390)
Q Consensus 121 ~~~~ip~~~v~GNHD~ 136 (390)
.+.+.|+|+++||||+
T Consensus 64 a~~G~~v~~i~GN~Df 79 (237)
T COG2908 64 ARKGTRVYYIHGNHDF 79 (237)
T ss_pred HhcCCeEEEecCchHH
Confidence 6789999999999997
No 53
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=99.24 E-value=6.6e-10 Score=100.78 Aligned_cols=217 Identities=16% Similarity=0.161 Sum_probs=106.6
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCC-EEEEcCCcCCCCChhhHHHHHHHHHhHhHh
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPD-LIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD-~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~ 122 (390)
++|+|++|+| ...... ... ......+..+.+.+++++|| +++.+||++.+.... .+..-...++.+..
T Consensus 1 ~~il~~nd~~-~~~~~~-~~~--------~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~-~~~~g~~~~~~l~~ 69 (257)
T cd07406 1 FTILHFNDVY-EIAPLD-GGP--------VGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLS-TATKGKQMVPVLNA 69 (257)
T ss_pred CeEEEEccce-eecccC-CCC--------cCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccch-hhcCCccHHHHHHh
Confidence 5899999999 211100 000 12344445555555667788 999999966443211 11111223333333
Q ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccC---CCCCccccCcccee-EEeccCCCCCCCCcceEEEEEEeC
Q 016429 123 SNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVN---PSDAHIIDGFGNYN-LEIGGVKGSGFENKSVLNLYFLDS 198 (390)
Q Consensus 123 ~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~g~~~y~-~~~~~~~~~~~~~~~~~~l~~lds 198 (390)
.+.. +.++||||+... .+.+.+.+++....+-.-+ .........+.-|. +...+ ..+-++.+.+
T Consensus 70 l~~d-~~~~GNHefd~g--~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g---------~kIgviG~~~ 137 (257)
T cd07406 70 LGVD-LACFGNHEFDFG--EDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAG---------VKIGLLGLVE 137 (257)
T ss_pred cCCc-EEeecccccccC--HHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECC---------eEEEEEEEec
Confidence 4544 557999998654 4455565554433221100 00000111112233 33333 1245666665
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCC
Q 016429 199 GDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVN 278 (390)
Q Consensus 199 ~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~ 278 (390)
............+..-.+-.+.+++.++++++ .....+|++.|-+..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~d~~~~~~~~v~~~~~---------~~~D~iVvl~H~g~~~d---------------------- 186 (257)
T cd07406 138 EEWLETLTIDPEYVRYRDYVETARELVDELRE---------QGADLIIALTHMRLPND---------------------- 186 (257)
T ss_pred ccccccccCCCCcceEcCHHHHHHHHHHHHHh---------CCCCEEEEEeccCchhh----------------------
Confidence 32110000001121112334445555544543 25677888999877431
Q ss_pred hHHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecCC
Q 016429 279 SGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGG 318 (390)
Q Consensus 279 ~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~ 318 (390)
..+.+ +-.++++|++||.|. ..+...++..++.++.
T Consensus 187 ~~la~---~~~~iD~IlgGH~H~-~~~~~~~~t~vv~~g~ 222 (257)
T cd07406 187 KRLAR---EVPEIDLILGGHDHE-YILVQVGGTPIVKSGS 222 (257)
T ss_pred HHHHH---hCCCCceEEecccce-eEeeeECCEEEEeCCc
Confidence 11111 125799999999999 4455667777665543
No 54
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.20 E-value=1.2e-10 Score=103.15 Aligned_cols=77 Identities=22% Similarity=0.222 Sum_probs=44.1
Q ss_pred EEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCC-----ChhhHHHHHHHHHhHhH
Q 016429 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGF-----DATDAAKSLNAAFAPAI 121 (390)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~-----~~~~~~~~~~~~l~~~~ 121 (390)
++|||+|++..... .......+.......+||.||++||++... ............+....
T Consensus 1 ~~iSDlHlg~~~~~--------------~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~ 66 (217)
T cd07398 1 LFISDLHLGDGGPA--------------ADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLA 66 (217)
T ss_pred CEeeeecCCCCCCC--------------HHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHH
Confidence 47999999975421 111112222211136999999999955321 11112222212233344
Q ss_pred hCCCCEEEEeCCCCCC
Q 016429 122 ASNIPWVAVLGNHDQE 137 (390)
Q Consensus 122 ~~~ip~~~v~GNHD~~ 137 (390)
..++++++++||||..
T Consensus 67 ~~~~~v~~v~GNHD~~ 82 (217)
T cd07398 67 DRGTRVYYVPGNHDFL 82 (217)
T ss_pred HCCCeEEEECCCchHH
Confidence 5789999999999983
No 55
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.16 E-value=4.2e-10 Score=90.42 Aligned_cols=69 Identities=26% Similarity=0.289 Sum_probs=44.9
Q ss_pred EEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCC
Q 016429 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIP 126 (390)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip 126 (390)
+++||+|++..... . ..........++|+||++||++..... .....+.. +........|
T Consensus 1 ~~~gD~h~~~~~~~----------------~--~~~~~~~~~~~~~~vi~~GD~~~~~~~-~~~~~~~~-~~~~~~~~~~ 60 (131)
T cd00838 1 AVISDIHGNLEALE----------------A--VLEAALAAAEKPDFVLVLGDLVGDGPD-PEEVLAAA-LALLLLLGIP 60 (131)
T ss_pred CeeecccCCccchH----------------H--HHHHHHhcccCCCEEEECCcccCCCCC-chHHHHHH-HHHhhcCCCC
Confidence 47899998864321 0 111345556899999999996655443 33323222 3344468999
Q ss_pred EEEEeCCCC
Q 016429 127 WVAVLGNHD 135 (390)
Q Consensus 127 ~~~v~GNHD 135 (390)
+++++||||
T Consensus 61 ~~~~~GNHD 69 (131)
T cd00838 61 VYVVPGNHD 69 (131)
T ss_pred EEEeCCCce
Confidence 999999999
No 56
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.16 E-value=5.1e-10 Score=90.28 Aligned_cols=37 Identities=35% Similarity=0.440 Sum_probs=25.4
Q ss_pred hcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCC
Q 016429 88 AEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHD 135 (390)
Q Consensus 88 ~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD 135 (390)
..++|+|+++|| +.. +.. ..+..+ .+.|+++|+||||
T Consensus 20 ~~~~d~ii~~GD-~~~----~~~----~~~~~~--~~~~~~~V~GN~D 56 (129)
T cd07403 20 LEGVDLILSAGD-LPK----EYL----EYLVTM--LNVPVYYVHGNHD 56 (129)
T ss_pred CCCCCEEEECCC-CCh----HHH----HHHHHH--cCCCEEEEeCCCc
Confidence 578999999999 421 111 222222 3678999999999
No 57
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=99.11 E-value=1.7e-08 Score=92.68 Aligned_cols=231 Identities=19% Similarity=0.199 Sum_probs=108.2
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEE-cCCcCCCCChhhHH---H--HHHHHH
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVF-TGDNIFGFDATDAA---K--SLNAAF 117 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~-~GD~i~~~~~~~~~---~--~~~~~l 117 (390)
++|++++|+|-.-.+. .+.. ...........+..+.+.+++++||.+++ +||++.+....... + .....+
T Consensus 1 l~il~t~D~Hg~~~~~-~~~~---~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~ 76 (277)
T cd07410 1 LRILATSDLHGNLLPY-DYYT---DKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMI 76 (277)
T ss_pred CeEEEEeccccceeCc-cccC---CCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHH
Confidence 5899999999432221 1110 00000123334455555566678998887 99966544211111 0 011233
Q ss_pred hHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCc-cccCcccee-EEec-cCCCCCCCCcceEEEE
Q 016429 118 APAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAH-IIDGFGNYN-LEIG-GVKGSGFENKSVLNLY 194 (390)
Q Consensus 118 ~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~~y~-~~~~-~~~~~~~~~~~~~~l~ 194 (390)
+.+...+.. ++++||||+..+ .+.+.+.+......+-.-+..... ....+.-|. +.+. + ..+-++
T Consensus 77 ~~ln~~g~d-~~~lGNHe~d~g--~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g---------~kVgvi 144 (277)
T cd07410 77 AAMNALGYD-AGTLGNHEFNYG--LDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVG---------VKVGII 144 (277)
T ss_pred HHHHhcCCC-EEeecccCcccC--HHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCC---------CEEEEE
Confidence 334345665 556799998654 345555555433221111100000 000111232 3333 3 113445
Q ss_pred EEeCCCCCCC--CC-CCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCC
Q 016429 195 FLDSGDYSTV--PS-VPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEG 271 (390)
Q Consensus 195 ~lds~~~~~~--~~-~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~ 271 (390)
.+-+...... +. ..+....+ -.+.+++.++++++. ....+|+++|.+.......
T Consensus 145 G~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~v~~lr~~---------~~D~IIvl~H~g~~~~~~~------------ 201 (277)
T cd07410 145 GLTTPQIPNWEKPNLIGGLKFTD--PVETAKKYVPKLRAE---------GADVVVVLAHGGFERDLEE------------ 201 (277)
T ss_pred ecCCcccccccCcccCCCcEEcC--HHHHHHHHHHHHHHc---------CCCEEEEEecCCcCCCccc------------
Confidence 4433211100 11 01111122 233455655556542 5667999999877431100
Q ss_pred CCCCCCChHHHHHHHHc-CCeeEEEeccCCCCCccc-ccCCeEEEecC
Q 016429 272 ISSASVNSGFFTTMVAA-GDVKAVFTGHDHVNDFCG-RLTGIQLCYGG 317 (390)
Q Consensus 272 ~~~~~~~~~~~~~l~~~-~~v~~v~~GH~H~~~~~~-~~~gi~~~~~~ 317 (390)
.+ ........|.+. .+|++|++||.|.. ... ..+++.++.++
T Consensus 202 --~~-~~~~~~~~la~~~~~vD~IlgGHsH~~-~~~~~~~~~~v~q~g 245 (277)
T cd07410 202 --SL-TGENAAYELAEEVPGIDAILTGHQHRR-FPGPTVNGVPVVQPG 245 (277)
T ss_pred --cc-CCccHHHHHHhcCCCCcEEEeCCCccc-cccCCcCCEEEEcCC
Confidence 00 111222445554 68999999999984 444 45676665443
No 58
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.09 E-value=2e-08 Score=91.02 Aligned_cols=95 Identities=20% Similarity=0.209 Sum_probs=52.3
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCC-EEEEcCCcCCCCChhhHHHHHHHHHhHhHh
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPD-LIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD-~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~ 122 (390)
++|+++||+| +.-.+ +.. ......+..+.+.++++.|| ++|.+||++.+..... .......+..+..
T Consensus 1 l~i~~~sD~h-g~~~~--~~~--------~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~-~~~~~~~~~~l~~ 68 (252)
T cd00845 1 LTILHTNDLH-GHFEP--AGG--------VGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST-ATKGEANIELMNA 68 (252)
T ss_pred CEEEEecccc-cCccc--cCC--------cCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh-ccCCcHHHHHHHh
Confidence 5899999999 32211 100 01333445555566667788 8899999766554321 1111223333333
Q ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q 016429 123 SNIPWVAVLGNHDQESTLSREGVMKHIVTLK 153 (390)
Q Consensus 123 ~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~ 153 (390)
.+. -++++||||+.... +.+.+.+.+..
T Consensus 69 ~g~-d~~~~GNHe~d~g~--~~l~~~~~~~~ 96 (252)
T cd00845 69 LGY-DAVTIGNHEFDYGL--DALAELYKDAN 96 (252)
T ss_pred cCC-CEEeeccccccccH--HHHHHHHHhCC
Confidence 454 44678999986543 34555555543
No 59
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=99.04 E-value=8.9e-08 Score=88.30 Aligned_cols=97 Identities=19% Similarity=0.163 Sum_probs=48.5
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCC-EEEEcCCcCCCCChhhHHHHHHHHHhHhHh
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPD-LIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD-~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~ 122 (390)
++|++++|+|-.-.+. .+.. .........+..+.+.++++.++ +++.+||.+.+.........-...+..+..
T Consensus 1 i~il~tnD~Hg~~~~~-~~~~-----~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~ 74 (288)
T cd07412 1 VQILAINDFHGRLEPP-GKVV-----TVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNA 74 (288)
T ss_pred CeEEEEeccccCccCC-CCcc-----ccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHh
Confidence 4799999999332211 1100 00011233334444444555565 899999965433221111000123333434
Q ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHH
Q 016429 123 SNIPWVAVLGNHDQESTLSREGVMKHI 149 (390)
Q Consensus 123 ~~ip~~~v~GNHD~~~~~~~~~~~~~~ 149 (390)
.++.+ +++||||+..+. +.+.+.+
T Consensus 75 ~g~Da-~t~GNHefd~G~--~~l~~~~ 98 (288)
T cd07412 75 MGVDA-SAVGNHEFDEGY--AELLRRI 98 (288)
T ss_pred hCCee-eeecccccccCH--HHHHHHH
Confidence 56665 667999997653 3444444
No 60
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=99.01 E-value=1.1e-07 Score=86.62 Aligned_cols=226 Identities=17% Similarity=0.127 Sum_probs=105.4
Q ss_pred eEEEEEecccccCCCCCCC-CCC-CcccccCCCChhHHHHHHHHHHhc-CCCEE-EEcCCcCCCCChhhHHHHHHHHHhH
Q 016429 44 FKILQVADMHFANGKTTPC-LDV-LPSQVAGCSDLNTTAFINRMISAE-KPDLI-VFTGDNIFGFDATDAAKSLNAAFAP 119 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~i~~~-~pD~V-v~~GD~i~~~~~~~~~~~~~~~l~~ 119 (390)
++|++++|+|-.-.+.... ... .+...........+..+.+.++++ .||.+ +.+||++.+... .....-...+..
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~~ 79 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGE-ALYTRGQAMVDA 79 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChH-HhhcCChhHHHH
Confidence 4799999999764332100 000 000001112334445555555566 89977 569996655432 111112233333
Q ss_pred hHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCCc-cccCccceeE-EeccCCCCCCCCcceEEEEEEe
Q 016429 120 AIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAH-IIDGFGNYNL-EIGGVKGSGFENKSVLNLYFLD 197 (390)
Q Consensus 120 ~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~~y~~-~~~~~~~~~~~~~~~~~l~~ld 197 (390)
+.. +++.++.||||+... .+.+.+.+.+...++-.-+-.... ....+..|.+ ...+ ..+.++.+.
T Consensus 80 l~~--~g~da~~GNHefd~g--~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g---------~kVgviG~~ 146 (264)
T cd07411 80 LNA--LGVDAMVGHWEFTYG--PERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGG---------VKIGVIGQT 146 (264)
T ss_pred HHh--hCCeEEecccccccC--HHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECC---------EEEEEEEec
Confidence 333 344443399998654 335555555543322111100000 0000112433 3332 225567776
Q ss_pred CCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCC
Q 016429 198 SGDYSTV-PSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSAS 276 (390)
Q Consensus 198 s~~~~~~-~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~ 276 (390)
+...... +.....++.-....+.+++.+.++.++ .....+|++.|.+..+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~D~iI~l~H~g~~~~-------------------- 198 (264)
T cd07411 147 FPYVPIANPPRFTPGLTFGIREEELQEVVVKLRRE--------EGVDVVVLLSHNGLPVD-------------------- 198 (264)
T ss_pred cCCcccccCcCCCCCcEECCHHHHHHHHHHHHHHh--------CCCCEEEEEecCCchhh--------------------
Confidence 5321110 100011222223455566654444332 35677999999876321
Q ss_pred CChHHHHHHH-HcCCeeEEEeccCCCCCcc--cccCCeEEEecC
Q 016429 277 VNSGFFTTMV-AAGDVKAVFTGHDHVNDFC--GRLTGIQLCYGG 317 (390)
Q Consensus 277 ~~~~~~~~l~-~~~~v~~v~~GH~H~~~~~--~~~~gi~~~~~~ 317 (390)
.++. +..+|++|++||.|..... ...+++.++.++
T Consensus 199 ------~~la~~~~~iDlilgGH~H~~~~~~~~~~~~t~v~~~g 236 (264)
T cd07411 199 ------VELAERVPGIDVILSGHTHERTPKPIIAGGGTLVVEAG 236 (264)
T ss_pred ------HHHHhcCCCCcEEEeCcccccccCcccccCCEEEEEcC
Confidence 1222 2257999999999973221 124666665554
No 61
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.00 E-value=1.9e-08 Score=84.45 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecCCCCCCCCCCCCCCceeEEEEEe
Q 016429 280 GFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVVVAS 339 (390)
Q Consensus 280 ~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~~~~~~~~~g~rv~ei~ 339 (390)
..++.+.+..+.++++.||+|.. .....+|+.++..|+.+ +..+. .+.+|-+++++
T Consensus 99 ~~l~~la~~~~~Dvli~GHTH~p-~~~~~~~i~~vNPGS~s-~pr~~--~~~sy~il~~~ 154 (172)
T COG0622 99 SLLEYLAKELGADVLIFGHTHKP-VAEKVGGILLVNPGSVS-GPRGG--NPASYAILDVD 154 (172)
T ss_pred HHHHHHHHhcCCCEEEECCCCcc-cEEEECCEEEEcCCCcC-CCCCC--CCcEEEEEEcC
Confidence 45677777778999999999994 44556777766655543 22221 34577777776
No 62
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.95 E-value=3.2e-07 Score=94.45 Aligned_cols=255 Identities=15% Similarity=0.130 Sum_probs=116.4
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCC-CEEEEcCCcCCCCChhhHHHHH-------
Q 016429 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKP-DLIVFTGDNIFGFDATDAAKSL------- 113 (390)
Q Consensus 42 ~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p-D~Vv~~GD~i~~~~~~~~~~~~------- 113 (390)
-.++|++++|+|-.-.+...+.+.... ......++.+.+.++++.+ -++|.+||++.+..-.+....-
T Consensus 38 ~~L~IL~TnDiHg~l~~~dy~~~~~~~----~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGspl~~~~~~~~~~~~~~ 113 (780)
T PRK09418 38 VNLRILETSDIHVNLMNYDYYQTKTDN----KVGLVQTATLVNKAREEAKNSVLFDDGDALQGTPLGDYVANKINDPKKP 113 (780)
T ss_pred eEEEEEEEeecCCCCcCcCccccCCcC----CCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCchHHHHHhhcccccccc
Confidence 469999999999764332111110000 0122223334444444444 4888999977665332221100
Q ss_pred ------HHHHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCC-------ccccCccceeEE-e--
Q 016429 114 ------NAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDA-------HIIDGFGNYNLE-I-- 177 (390)
Q Consensus 114 ------~~~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-------~~~~g~~~y~~~-~-- 177 (390)
.-++..|..++.. +.++||||+..+ .+.+.+.+......+-.-+-... .....+.-|.+. .
T Consensus 114 ~~~~~~~p~i~~mN~lgyD-a~tlGNHEFdyG--~d~L~~~l~~a~fPvl~ANV~~~~~~~~~~~~~~~~~PY~I~e~~v 190 (780)
T PRK09418 114 VDPSYTHPLYRLMNLMKYD-VISLGNHEFNYG--LDYLNKVISKTEFPVINSNVYKDDKDNNEENDQNYFKPYHVFEKEV 190 (780)
T ss_pred cccccchHHHHHHhccCCC-EEeccccccccC--HHHHHHHHhhCCCCEEEeeeecccccccccccccccCCEEEEEeee
Confidence 0122323334444 467899998654 44565655543332211111000 000011224332 1
Q ss_pred ccCCCCCCCCcceEEEEEEeCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhh
Q 016429 178 GGVKGSGFENKSVLNLYFLDSGDYSTVPSVPGYG-WIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEF 256 (390)
Q Consensus 178 ~~~~~~~~~~~~~~~l~~lds~~~~~~~~~~~~g-~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~ 256 (390)
.+..+.. ....+-++.+-+..-.........+ +.-.+-++=+++...+++++ ....+|++.|..+...
T Consensus 191 ~~~~G~~--~gvKIGiIGlttp~~~~w~~~~~~g~v~f~D~veaa~~~v~~Lr~~---------GaDvIIaLsH~G~~~d 259 (780)
T PRK09418 191 EDESGQK--QKVKIGVMGFVPPQVMNWDKANLEGKVKAKDIVETAKKMVPKMKAE---------GADVIVALAHSGVDKS 259 (780)
T ss_pred ccccccc--CCceEEEEEeccccccccccccccCCeEECCHHHHHHHHHHHHHhc---------CCCEEEEEeccCcccc
Confidence 1101100 0112445655442100000000011 11122233355555556542 5677999999877431
Q ss_pred hhccCCCcccccCCCCCCCCCChHHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecCCCCCCCCCCCCCCceeEEE
Q 016429 257 AYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVV 336 (390)
Q Consensus 257 ~~~~~~~~~g~~~e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~~~~~~~~~g~rv~ 336 (390)
. . ... ..|... .+.+-.+|++|++||.|. .+....+|+.++.++..| ....++
T Consensus 260 ~--~--------~~~----~ena~~--~l~~v~gID~IlgGHsH~-~~~~~ingv~vvqaG~~G----------~~LG~I 312 (780)
T PRK09418 260 G--Y--------NVG----MENASY--YLTEVPGVDAVLMGHSHT-EVKDVFNGVPVVMPGVFG----------SNLGII 312 (780)
T ss_pred c--c--------ccc----chhhhH--HHhcCCCCCEEEECCCCC-cccccCCCEEEEEcChhh----------cEEEEE
Confidence 0 0 000 012211 133345899999999999 566667888877654322 345566
Q ss_pred EEecc
Q 016429 337 VASLE 341 (390)
Q Consensus 337 ei~~~ 341 (390)
+++.+
T Consensus 313 dL~ld 317 (780)
T PRK09418 313 DMQLK 317 (780)
T ss_pred EEEEE
Confidence 66654
No 63
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.94 E-value=1.7e-08 Score=101.59 Aligned_cols=96 Identities=20% Similarity=0.149 Sum_probs=47.7
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc----CC-CEEEEcCCcCCCCChhhHHHHHHH
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE----KP-DLIVFTGDNIFGFDATDAAKSLNA 115 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~----~p-D~Vv~~GD~i~~~~~~~~~~~~~~ 115 (390)
.-+++|++++|+|-.-.+.. . . +.....+..+.+.++++ .| -+++.+||.+.+... .....-..
T Consensus 32 ~~~ltil~tnD~Hg~~~~~~-~--------~-~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~-s~~~~g~~ 100 (551)
T PRK09558 32 TYKITILHTNDHHGHFWRNE-Y--------G-EYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPE-SDLQDAEP 100 (551)
T ss_pred ceEEEEEEecccCCCccccc-c--------C-CccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEh-hhhcCCch
Confidence 35689999999996532210 0 0 01111222223333322 33 578889996554321 11101112
Q ss_pred HHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHH
Q 016429 116 AFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIV 150 (390)
Q Consensus 116 ~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~ 150 (390)
.+.-+...+..+.. +||||+..+.. .+.+...
T Consensus 101 ~i~~mN~~g~Da~t-lGNHEFD~G~~--~L~~~~~ 132 (551)
T PRK09558 101 DFRGMNLIGYDAMA-VGNHEFDNPLS--VLRKQEK 132 (551)
T ss_pred hHHHHhcCCCCEEc-ccccccCcCHH--HHHHhhc
Confidence 23323345666655 59999987643 4444443
No 64
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.94 E-value=7.7e-08 Score=104.70 Aligned_cols=104 Identities=21% Similarity=0.154 Sum_probs=53.1
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEE-cCCcCCCCChhhHHHH--------
Q 016429 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVF-TGDNIFGFDATDAAKS-------- 112 (390)
Q Consensus 42 ~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~-~GD~i~~~~~~~~~~~-------- 112 (390)
..++|++++|+|-.-.+.....+. + ........++.+.+.++++.|+.+++ +||++.+..-.+....
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~-~---~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~ 115 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDK-E---TTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNK 115 (1163)
T ss_pred eEEEEEEEecccccccccccccCC-C---CCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCC
Confidence 469999999999764332111110 0 00012333444555555667776555 9997766532111100
Q ss_pred HHHHHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHc
Q 016429 113 LNAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTL 152 (390)
Q Consensus 113 ~~~~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~ 152 (390)
-...+..|...+..+ .++||||+..+. +.+.+.+...
T Consensus 116 ~~~~i~~mN~lgyDa-~~lGNHEFd~G~--~~L~~~~~~a 152 (1163)
T PRK09419 116 THPMIKAMNALGYDA-GTLGNHEFNYGL--DFLDGTIKGA 152 (1163)
T ss_pred cCHHHHHHhhcCccE-EeecccccccCH--HHHHHHHhcC
Confidence 011222233345444 569999997653 4555555543
No 65
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=98.93 E-value=3e-08 Score=97.60 Aligned_cols=213 Identities=14% Similarity=0.264 Sum_probs=85.3
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCCh---------------
Q 016429 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDA--------------- 106 (390)
Q Consensus 42 ~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~--------------- 106 (390)
..|||++.|+-++..+. ...+..+++..+|||+|++||.||.+..
T Consensus 104 ~~~r~a~~SC~~~~~~~--------------------~~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~ 163 (453)
T PF09423_consen 104 DPFRFAFGSCQNYEDGY--------------------FPAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAP 163 (453)
T ss_dssp --EEEEEE----CCC-----------------------HHHHHHTT-S--SEEEE-S-SS----TTSS--TT---S----
T ss_pred CceEEEEECCCCcccCh--------------------HHHHHhhhccCCCcEEEEeCCeeeccCCccccccccccccccc
Confidence 45999999988864322 1344455444799999999999998842
Q ss_pred -----h---hHH-HHHH-----HHHhHhHhCCCCEEEEeCCCCCCCCCC-----------H-------HHHHHHHHHcCC
Q 016429 107 -----T---DAA-KSLN-----AAFAPAIASNIPWVAVLGNHDQESTLS-----------R-------EGVMKHIVTLKN 154 (390)
Q Consensus 107 -----~---~~~-~~~~-----~~l~~~~~~~ip~~~v~GNHD~~~~~~-----------~-------~~~~~~~~~~~~ 154 (390)
. +.+ ..+. ..++.+. ..+|+++++-.||+..+.. . ..+..+.+-.|.
T Consensus 164 ~p~~~~~~l~~yR~~y~~~~~~p~l~~~~-~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~~p~ 242 (453)
T PF09423_consen 164 EPAHEAETLDDYRRRYRQYRSDPDLRRLH-ANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAYFEYQPV 242 (453)
T ss_dssp -SSSS--SHHHHHHHHHHHHT-HHHHHHH-HHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHHHHHS--
T ss_pred ccccccccHHHHHHHHHHHcCCHHHHHHh-hcccEEEEccCceecccccCCccccccccccchHHHHHHHHHHHHhhcCc
Confidence 0 011 1111 1222232 4789999999999976543 0 011111111111
Q ss_pred CccccCCCCCccccCccceeEEeccCCCCCCCCcceEEEEEEeCCCCCCCCC------------CCCCCCCCHHHHHHHH
Q 016429 155 TLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYSTVPS------------VPGYGWIKPSQQFWFE 222 (390)
Q Consensus 155 ~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~~~~~~~~------------~~~~g~i~~~q~~Wl~ 222 (390)
.... +.. ....-++.+.++. .+.+++||+-.|..... .+....++++|++||+
T Consensus 243 r~~~--~~~---~~~~~y~~~~~G~----------~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~ 307 (453)
T PF09423_consen 243 RNPD--PPG---DQGRIYRSFRYGD----------LVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLE 307 (453)
T ss_dssp -GGG---BT---TB----EEEEETT----------TEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHH
T ss_pred cCCC--ccC---CCCceEEEEecCC----------ceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHH
Confidence 1000 000 0111234455543 27899999976654321 1234559999999999
Q ss_pred HHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHHHHHHHcCCe--eEEEeccCC
Q 016429 223 QTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDV--KAVFTGHDH 300 (390)
Q Consensus 223 ~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~l~~~~~v--~~v~~GH~H 300 (390)
+.|++. ...+.|+..-.|+................+.........+.|..++...++ .++|+|..|
T Consensus 308 ~~L~~s------------~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH 375 (453)
T PF09423_consen 308 DWLASS------------QATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVH 375 (453)
T ss_dssp HHHHH--------------SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSS
T ss_pred HHHhcC------------CCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcc
Confidence 998752 456788887777643221110000000111111111223333344444445 489999999
Q ss_pred CC
Q 016429 301 VN 302 (390)
Q Consensus 301 ~~ 302 (390)
..
T Consensus 376 ~~ 377 (453)
T PF09423_consen 376 AS 377 (453)
T ss_dssp SE
T ss_pred hh
Confidence 84
No 66
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.92 E-value=1.2e-07 Score=85.96 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=52.1
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
++|++++|+|..-.+.. . .......+..+.+.++++.+++++.+||.+.+... .....-...++.+...
T Consensus 1 i~il~~~D~H~~~~~~~---~-------~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~~ln~~ 69 (257)
T cd07408 1 ITILHTNDIHGRIDEDD---N-------NGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPI-SDLDKGETIIKIMNAV 69 (257)
T ss_pred CEEEEeccCcccccCCC---C-------ccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchh-hhhcCCcHHHHHHHhc
Confidence 58999999995432210 0 01122233334444444467899999996655321 1111112233334446
Q ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q 016429 124 NIPWVAVLGNHDQESTLSREGVMKHIVTLK 153 (390)
Q Consensus 124 ~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~ 153 (390)
+..++ ++||||+... .+.+.+..+...
T Consensus 70 g~d~~-~~GNHefd~G--~~~l~~~~~~~~ 96 (257)
T cd07408 70 GYDAV-TPGNHEFDYG--LDRLKELSKEAD 96 (257)
T ss_pred CCcEE-ccccccccCC--HHHHHHHHhhCC
Confidence 77774 6799998654 445555555443
No 67
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.89 E-value=2.6e-08 Score=93.14 Aligned_cols=96 Identities=24% Similarity=0.216 Sum_probs=56.3
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCC-CChhHHHHHHHHHHhcCCCEEEEcCCcCCCCC--hhhHHHHHHHHH
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGC-SDLNTTAFINRMISAEKPDLIVFTGDNIFGFD--ATDAAKSLNAAF 117 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~--~~~~~~~~~~~l 117 (390)
+..+||+.+||+|+-...... .......++ .|....+.+..+..-.+||.+++.||+++++. +++++..-.+.+
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~---~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~Rf 122 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKK---FLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERF 122 (410)
T ss_pred CCceEEEEecCchhcCCCCCc---cccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHH
Confidence 578999999999997643111 000111112 23333344444444579999999999555332 122222222223
Q ss_pred hHhHh--CCCCEEEEeCCCCCCCC
Q 016429 118 APAIA--SNIPWVAVLGNHDQEST 139 (390)
Q Consensus 118 ~~~~~--~~ip~~~v~GNHD~~~~ 139 (390)
..+.. ..+|++.+|||||.+..
T Consensus 123 kkIf~~k~~~~~~~i~GNhDIGf~ 146 (410)
T KOG3662|consen 123 KKIFGRKGNIKVIYIAGNHDIGFG 146 (410)
T ss_pred HHhhCCCCCCeeEEeCCccccccc
Confidence 33333 58999999999999765
No 68
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.88 E-value=1.1e-06 Score=80.81 Aligned_cols=210 Identities=19% Similarity=0.169 Sum_probs=98.3
Q ss_pred eEEEEEecccccCCCCCCCCCC-CcccccCCCChhHHHHHHHHHHhcCCC-EEEEcCCcCCCCChhhHHHHHHHHHhHhH
Q 016429 44 FKILQVADMHFANGKTTPCLDV-LPSQVAGCSDLNTTAFINRMISAEKPD-LIVFTGDNIFGFDATDAAKSLNAAFAPAI 121 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~~~pD-~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~ 121 (390)
++|++++|+|-.-.+....... .............+..+.+.++++.++ +++.+||.+.+..... ...-...++.+.
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~-~~~g~~~~~~ln 79 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYT-LYKGNADAEFMN 79 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhh-hcCChHHHHHHH
Confidence 5799999999653221100000 000000011233334444444456777 5555999665543211 111122233333
Q ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCC--CCC--ccccCcccee-EEeccCCCCCCCCcceEEEEEE
Q 016429 122 ASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNP--SDA--HIIDGFGNYN-LEIGGVKGSGFENKSVLNLYFL 196 (390)
Q Consensus 122 ~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~--~~~~g~~~y~-~~~~~~~~~~~~~~~~~~l~~l 196 (390)
..+..++ ++||||+.... +.+.+.+......+-.-+- ... .....+..|. +.+.| ..+-++.+
T Consensus 80 ~~g~D~~-~lGNHefd~G~--~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G---------~kIgviG~ 147 (281)
T cd07409 80 LLGYDAM-TLGNHEFDDGV--EGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGG---------EKIGIIGY 147 (281)
T ss_pred hcCCCEE-EeccccccCCH--HHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECC---------EEEEEEEE
Confidence 4677755 56999997654 3444554443322111110 000 0001112233 23333 12456666
Q ss_pred eCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCC
Q 016429 197 DSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSAS 276 (390)
Q Consensus 197 ds~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~ 276 (390)
-+...... ..+..+..-.+..+.+++.+++++++ ....+|++.|......
T Consensus 148 ~~~~~~~~-~~~~~~~~~~d~~~~~~~~v~~lr~~---------~~D~II~l~H~G~~~d-------------------- 197 (281)
T cd07409 148 TTPDTTEL-SSPGGKVKFLDEIEAAQKEADKLKAQ---------GVNKIIALSHSGYEVD-------------------- 197 (281)
T ss_pred ecCccccc-ccCCCceEECCHHHHHHHHHHHHHhc---------CCCEEEEEeccCchhH--------------------
Confidence 55321111 00011222223456677777777652 4667899999876321
Q ss_pred CChHHHHHHHHc-CCeeEEEeccCCCC
Q 016429 277 VNSGFFTTMVAA-GDVKAVFTGHDHVN 302 (390)
Q Consensus 277 ~~~~~~~~l~~~-~~v~~v~~GH~H~~ 302 (390)
..|.+. .++++|++||.|..
T Consensus 198 ------~~la~~~~giD~IiggH~H~~ 218 (281)
T cd07409 198 ------KEIARKVPGVDVIVGGHSHTF 218 (281)
T ss_pred ------HHHHHcCCCCcEEEeCCcCcc
Confidence 122222 57999999999984
No 69
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.87 E-value=3.4e-09 Score=90.09 Aligned_cols=86 Identities=23% Similarity=0.384 Sum_probs=52.6
Q ss_pred EEEecccccCCCCCCC-CCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHH-HhHhHhCC
Q 016429 47 LQVADMHFANGKTTPC-LDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAA-FAPAIASN 124 (390)
Q Consensus 47 ~~iSDlH~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~-l~~~~~~~ 124 (390)
+++||+|+|......- .-..|. ....++++.+.+.+++.+||.||++||++.+...... ...... +......+
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~----~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~-~~~~~~~~~~~~~~~ 75 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPR----GQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSR-QEFEEVAFLRLLAKD 75 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCc----ccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCH-HHHHHHHHHHhccCC
Confidence 4799999996431100 000111 1233577888888889999999999996544332211 111111 22233468
Q ss_pred CCEEEEeCCCCCC
Q 016429 125 IPWVAVLGNHDQE 137 (390)
Q Consensus 125 ip~~~v~GNHD~~ 137 (390)
+|+++++||||..
T Consensus 76 ~~v~~i~GNHD~~ 88 (172)
T cd07391 76 VDVILIRGNHDGG 88 (172)
T ss_pred CeEEEEcccCccc
Confidence 9999999999973
No 70
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=98.79 E-value=1.7e-07 Score=89.01 Aligned_cols=92 Identities=25% Similarity=0.408 Sum_probs=61.1
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHh--
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFA-- 118 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~-- 118 (390)
++.+||++.||.|+|.+...+.+. .....+++.+.....++++|+|+..|| +++.+.+.. ..+.+.++
T Consensus 11 entirILVaTD~HlGY~EkD~vrg--------~DSf~tFeEIl~iA~e~~VDmiLlGGD-LFHeNkPSr-~~L~~~i~lL 80 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRG--------DDSFVTFEEILEIAQENDVDMILLGGD-LFHENKPSR-KTLHRCLELL 80 (646)
T ss_pred ccceEEEEeecCccccccCCcccc--------cchHHHHHHHHHHHHhcCCcEEEecCc-ccccCCccH-HHHHHHHHHH
Confidence 678999999999999876433211 012346677777777899999999999 666654421 11111111
Q ss_pred ----------------------------------HhHhCCCCEEEEeCCCCCCCCCCH
Q 016429 119 ----------------------------------PAIASNIPWVAVLGNHDQESTLSR 142 (390)
Q Consensus 119 ----------------------------------~~~~~~ip~~~v~GNHD~~~~~~~ 142 (390)
+-..-.||++.|-||||...+.++
T Consensus 81 RryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~ 138 (646)
T KOG2310|consen 81 RRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGR 138 (646)
T ss_pred HHHccCCCceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccc
Confidence 111246899999999999876553
No 71
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.74 E-value=8.3e-07 Score=96.76 Aligned_cols=218 Identities=14% Similarity=0.082 Sum_probs=106.9
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEE-cCCcCCCCChhhHHHHHHHHHhHh
Q 016429 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVF-TGDNIFGFDATDAAKSLNAAFAPA 120 (390)
Q Consensus 42 ~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~-~GD~i~~~~~~~~~~~~~~~l~~~ 120 (390)
.+++|++++|+|-... ....+..+.+.+++++||.+++ +||++.+... .....-...+..+
T Consensus 659 ~~l~Il~~nD~Hg~l~-----------------g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~-~~~~~g~~~~~~l 720 (1163)
T PRK09419 659 WELTILHTNDFHGHLD-----------------GAAKRVTKIKEVKEENPNTILVDAGDVYQGSLY-SNLLKGLPVLKMM 720 (1163)
T ss_pred eEEEEEEEeecccCCC-----------------CHHHHHHHHHHHHhhCCCeEEEecCCCCCCcch-hhhcCChHHHHHH
Confidence 4599999999993221 1222344445556678998877 9996654421 1111112233333
Q ss_pred HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcC------------CCc--ccc-CCCCCccccCccceeE-EeccCCCCC
Q 016429 121 IASNIPWVAVLGNHDQESTLSREGVMKHIVTLK------------NTL--SQV-NPSDAHIIDGFGNYNL-EIGGVKGSG 184 (390)
Q Consensus 121 ~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~------------~~~--~~~-~p~~~~~~~g~~~y~~-~~~~~~~~~ 184 (390)
...+.. ++++||||+..+. +.+.+++.... ..+ ..+ ............-|.+ .+.|
T Consensus 721 n~lg~d-~~~~GNHEfd~g~--~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G----- 792 (1163)
T PRK09419 721 KEMGYD-ASTFGNHEFDWGP--DVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNG----- 792 (1163)
T ss_pred hCcCCC-EEEecccccccCh--HHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECC-----
Confidence 333443 5599999997654 34555554322 000 000 0000000001112332 3322
Q ss_pred CCCcceEEEEEEeCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCC
Q 016429 185 FENKSVLNLYFLDSGDY--STVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQS 262 (390)
Q Consensus 185 ~~~~~~~~l~~lds~~~--~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~ 262 (390)
..+-++.+-+..- ...+.. ..++--.+..+.+++..++++++ .....+|+++|....... .
T Consensus 793 ----~kIgiiGltt~~~~~~~~p~~-~~~l~f~d~~e~~~~~v~~Lr~~--------~~~D~VV~LsH~G~~~d~--~-- 855 (1163)
T PRK09419 793 ----KKVGFIGLTTPETAYKTSPGN-VKNLEFKDPAEAAKKWVKELKEK--------EKVDAIIALTHLGSNQDR--T-- 855 (1163)
T ss_pred ----EEEEEEEecccccccccCCCC-cCCcEEcCHHHHHHHHHHHHHhh--------cCCCEEEEEecCCccccc--c--
Confidence 1245666654211 011110 01222223455577777767632 256789999998774310 0
Q ss_pred CcccccCCCCCCCCCChHHHHHHHH-cCCeeEEEeccCCCCCcccccCCeEEEecC
Q 016429 263 NFTGVRQEGISSASVNSGFFTTMVA-AGDVKAVFTGHDHVNDFCGRLTGIQLCYGG 317 (390)
Q Consensus 263 ~~~g~~~e~~~~~~~~~~~~~~l~~-~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~ 317 (390)
.+ ......|.+ -.+|++|+.||.|. ......+++.++-++
T Consensus 856 --~~------------~~~~~~lA~~v~gIDvIigGHsH~-~~~~~v~~~~ivqag 896 (1163)
T PRK09419 856 --TG------------EITGLELAKKVKGVDAIISAHTHT-LVDKVVNGTPVVQAY 896 (1163)
T ss_pred --cc------------ccHHHHHHHhCCCCCEEEeCCCCc-cccccCCCEEEEeCC
Confidence 00 111233333 35799999999998 444556777666543
No 72
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.66 E-value=4.7e-08 Score=86.34 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=53.5
Q ss_pred EEEEEecccccCCCCCCCCC-CCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 45 KILQVADMHFANGKTTPCLD-VLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 45 ki~~iSDlH~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
+.+++||+|++......-+. ..|. ......++.+.+.++..+||.||++||+.........++.+.+.++. .
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~----~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~---~ 88 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPG----FQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEV---T 88 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCCh----hHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHh---c
Confidence 46899999999643210000 0111 11235667777777888999999999955433322334445445543 3
Q ss_pred CCCEEEEeCCCCC
Q 016429 124 NIPWVAVLGNHDQ 136 (390)
Q Consensus 124 ~ip~~~v~GNHD~ 136 (390)
..++++|+||||.
T Consensus 89 ~~~v~~V~GNHD~ 101 (225)
T TIGR00024 89 FRDLILIRGNHDA 101 (225)
T ss_pred CCcEEEECCCCCC
Confidence 5699999999996
No 73
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.65 E-value=8.4e-07 Score=70.96 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=44.8
Q ss_pred EEEEEecccccCCCCCCCCCCCcccccCCCChhHHH-HHHHHHHhcCC-CEEEEcCCcCCCCChhhHHHHHHHHHhHhHh
Q 016429 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTA-FINRMISAEKP-DLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (390)
Q Consensus 45 ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~p-D~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~ 122 (390)
.+-++||+||+...--...... .-...-+ .+....+..+| |.|.+.||+..+.+... .+..+++.
T Consensus 5 mmyfisDtHfgh~nvi~~~pfs-------n~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~---~a~~Iler--- 71 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFS-------NPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRER---AAGLILER--- 71 (186)
T ss_pred EEEEecccccCCcceeecCCCC-------CHHHHhHHHHHhHHhcCCccceEEEecccccccchhh---HHHHHHHH---
Confidence 4789999999965421111000 0001111 12222233455 89999999776655422 33344443
Q ss_pred CCCCEEEEeCCCCCC
Q 016429 123 SNIPWVAVLGNHDQE 137 (390)
Q Consensus 123 ~~ip~~~v~GNHD~~ 137 (390)
++-....|+||||-.
T Consensus 72 LnGrkhlv~GNhDk~ 86 (186)
T COG4186 72 LNGRKHLVPGNHDKC 86 (186)
T ss_pred cCCcEEEeeCCCCCC
Confidence 466679999999973
No 74
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.64 E-value=2.2e-06 Score=78.47 Aligned_cols=93 Identities=22% Similarity=0.189 Sum_probs=42.7
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCcccccCCCCh-hHHHHHHHHHHhcCCC-EEEEcCCcCCCCChhhHHH-HHHHHHh
Q 016429 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDL-NTTAFINRMISAEKPD-LIVFTGDNIFGFDATDAAK-SLNAAFA 118 (390)
Q Consensus 42 ~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~pD-~Vv~~GD~i~~~~~~~~~~-~~~~~l~ 118 (390)
.+++|+|++|+|-.-.+... . +......... ...+.+.+..+++.|+ +++.+||.+.+..-..... .-...++
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~-~---~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~ 79 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLN-D---PNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNP 79 (282)
T ss_pred ceEEEEEEcccccCCcCcCC-c---ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHH
Confidence 57899999999953221100 0 0000001111 1123333333344666 6677999666543211110 0111222
Q ss_pred HhHhCCCCEEEEeCCCCCCCC
Q 016429 119 PAIASNIPWVAVLGNHDQEST 139 (390)
Q Consensus 119 ~~~~~~ip~~~v~GNHD~~~~ 139 (390)
-|...+.. ++++||||+...
T Consensus 80 ~mN~mgyD-a~tlGNHEFd~g 99 (282)
T cd07407 80 IFRMMPYD-LLTIGNHELYNY 99 (282)
T ss_pred HHHhcCCc-EEeecccccCcc
Confidence 22223333 468999999654
No 75
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.63 E-value=1.4e-07 Score=93.32 Aligned_cols=84 Identities=13% Similarity=0.217 Sum_probs=56.4
Q ss_pred cCCCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHH---------hcCCCEEEEcCCcCCCCCh---
Q 016429 39 RQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS---------AEKPDLIVFTGDNIFGFDA--- 106 (390)
Q Consensus 39 ~~~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~---------~~~pD~Vv~~GD~i~~~~~--- 106 (390)
..+..++|+++||+|++.... ....+..+.+.+. +.+||.||++||++.+.+.
T Consensus 239 ~~~~~~~i~~ISDlHlgs~~~---------------~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~ 303 (504)
T PRK04036 239 TKDEKVYAVFISDVHVGSKEF---------------LEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPG 303 (504)
T ss_pred cCCCccEEEEEcccCCCCcch---------------hHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCcc
Confidence 346779999999999986531 1233455666666 6789999999997654220
Q ss_pred -------h---hHHHHHHHHHhHhHhCCCCEEEEeCCCCCCC
Q 016429 107 -------T---DAAKSLNAAFAPAIASNIPWVAVLGNHDQES 138 (390)
Q Consensus 107 -------~---~~~~~~~~~l~~~~~~~ip~~~v~GNHD~~~ 138 (390)
. ..++.+.+.+..+ ...+|++++|||||...
T Consensus 304 ~~~~~~~~~~~~~~~~l~~~L~~L-~~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 304 QEEELEIVDIYEQYEAAAEYLKQI-PEDIKIIISPGNHDAVR 344 (504)
T ss_pred chhhccchhhHHHHHHHHHHHHhh-hcCCeEEEecCCCcchh
Confidence 0 1123444555544 25789999999999753
No 76
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.61 E-value=1.3e-05 Score=81.87 Aligned_cols=105 Identities=23% Similarity=0.253 Sum_probs=52.8
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCC-CEEEEcCCcCCCCChhhHHHH--H----
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKP-DLIVFTGDNIFGFDATDAAKS--L---- 113 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p-D~Vv~~GD~i~~~~~~~~~~~--~---- 113 (390)
...++|++.+|+|-.-.+...+.+. +.. ......+..+.+.++++.+ -++|-+||++.+..-.+.... +
T Consensus 23 ~~~L~IL~TnDlHg~l~~~dy~~~~-~~~---~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~ 98 (649)
T PRK09420 23 TVDLRIMETTDLHSNMMDFDYYKDK-PTE---KFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGD 98 (649)
T ss_pred CceEEEEEEcccccCccCCccccCC-ccc---ccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCC
Confidence 3579999999999764332111110 000 0122223334444444444 478889997665532221110 0
Q ss_pred -HHHHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHc
Q 016429 114 -NAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTL 152 (390)
Q Consensus 114 -~~~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~ 152 (390)
.-.+..|...+.. +.++||||+..+. +.+.+.+...
T Consensus 99 ~~p~i~amN~lgyD-a~tlGNHEFd~G~--~~L~~~~~~a 135 (649)
T PRK09420 99 VHPVYKAMNTLDYD-VGNLGNHEFNYGL--DYLKKALAGA 135 (649)
T ss_pred cchHHHHHHhcCCc-EEeccchhhhcCH--HHHHHHHhcC
Confidence 0123333334443 5678999987653 4565655543
No 77
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.60 E-value=1.6e-06 Score=86.74 Aligned_cols=232 Identities=17% Similarity=0.134 Sum_probs=112.0
Q ss_pred cCCCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc-CCCEEEEcCCcCCCCChhhH---HHHHH
Q 016429 39 RQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE-KPDLIVFTGDNIFGFDATDA---AKSLN 114 (390)
Q Consensus 39 ~~~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~pD~Vv~~GD~i~~~~~~~~---~~~~~ 114 (390)
....+++|+|++|+|-.-.......+ ... .........+.+.++++ +..++|-+||++.+..-... .....
T Consensus 22 ~~~~~l~ilhtnD~H~~l~~~~~~~~-~~~----~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~ 96 (517)
T COG0737 22 AETVKLTILHTNDLHGHLEPYDYDDD-GDT----DGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTV 96 (517)
T ss_pred cCceeEEEEEeccccccceecccccc-Ccc----cccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHH
Confidence 44678999999999976542111000 000 01222233344444444 45789999997766432221 01122
Q ss_pred HHHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccC--CCCCccccC-ccceeEEeccCCCCCCCCcceE
Q 016429 115 AAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVN--PSDAHIIDG-FGNYNLEIGGVKGSGFENKSVL 191 (390)
Q Consensus 115 ~~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~g-~~~y~~~~~~~~~~~~~~~~~~ 191 (390)
+++.. .+.. +.+.|||++..+. +.+.+.......++-.-+ ......... ..+..+.+.+ ..+
T Consensus 97 ~~mN~---m~yD-a~tiGNHEFd~g~--~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g---------~KI 161 (517)
T COG0737 97 DLLNA---LGYD-AMTLGNHEFDYGL--EALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGG---------VKI 161 (517)
T ss_pred HHHhh---cCCc-EEeecccccccCH--HHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCC---------eEE
Confidence 22222 2322 4578999997653 345555443322211100 010000111 1222333333 225
Q ss_pred EEEEEeCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccC
Q 016429 192 NLYFLDSGDYS--TVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQ 269 (390)
Q Consensus 192 ~l~~lds~~~~--~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~ 269 (390)
-++.+-+.... ..++ ..-++.-.+..+++++.+.+++++ ....+|++.|.++....... ...
T Consensus 162 giIG~~~~~~~~~~~~~-~~~~~~f~d~~e~~~~~i~elk~~---------~vD~iI~LsH~G~~~d~~~~------~~~ 225 (517)
T COG0737 162 GIIGLTTPTIPTWEKPN-AIEGVTFRDPIEAAKKYIPELKGE---------GVDVIIALSHLGIEDDLELA------SEV 225 (517)
T ss_pred EEEEecCCccccccccc-ccCCcEEcCHHHHHHHHHHHHHhc---------CCCEEEEEeccCcCcccccc------ccc
Confidence 56776652111 1111 123444446788888888888753 36789999999885421111 000
Q ss_pred CCCCCCCCChHHHHHHHHcCCeeEEEeccCCCC----CcccccCCeEEEecC
Q 016429 270 EGISSASVNSGFFTTMVAAGDVKAVFTGHDHVN----DFCGRLTGIQLCYGG 317 (390)
Q Consensus 270 e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~----~~~~~~~gi~~~~~~ 317 (390)
+.. ..... ..+++++.||.|.. ......+++.++.++
T Consensus 226 ~~~----------~~~~~-~~iD~i~~GH~H~~~~~~~~~~~~~~t~ivqag 266 (517)
T COG0737 226 PGD----------VDVAV-PGIDLIIGGHSHTVFPGGDKPGTVNGTPIVQAG 266 (517)
T ss_pred ccc----------ccccc-cCcceEeccCCcccccCCcccCccCCEEEEccC
Confidence 000 00000 34999999999952 112234666666554
No 78
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.57 E-value=1.5e-07 Score=84.67 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=48.1
Q ss_pred EEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc-----CCCEEEEcCCcCCCCC----h---------hh
Q 016429 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE-----KPDLIVFTGDNIFGFD----A---------TD 108 (390)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-----~pD~Vv~~GD~i~~~~----~---------~~ 108 (390)
+++||+|++.... ....++.+.+.++.. ++|.||++||++.... . .+
T Consensus 2 ~~iSDlHl~~~~~---------------~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~ 66 (243)
T cd07386 2 VFISDVHVGSKTF---------------LEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYE 66 (243)
T ss_pred EEecccCCCchhh---------------hHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHH
Confidence 6899999986431 123345666766654 5699999999654421 0 01
Q ss_pred HHHHHHHHHhHhHhCCCCEEEEeCCCCCCC
Q 016429 109 AAKSLNAAFAPAIASNIPWVAVLGNHDQES 138 (390)
Q Consensus 109 ~~~~~~~~l~~~~~~~ip~~~v~GNHD~~~ 138 (390)
....+.+.++.+ ..++|++++|||||...
T Consensus 67 ~~~~~~~~l~~L-~~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 67 QYEEAAEYLSDV-PSHIKIIIIPGNHDAVR 95 (243)
T ss_pred HHHHHHHHHHhc-ccCCeEEEeCCCCCccc
Confidence 123344444443 24699999999999854
No 79
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.55 E-value=1.5e-05 Score=73.43 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=46.7
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc----CC-CEEEEcCCcCCCCChhhHHHHHHHHHh
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE----KP-DLIVFTGDNIFGFDATDAAKSLNAAFA 118 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~----~p-D~Vv~~GD~i~~~~~~~~~~~~~~~l~ 118 (390)
++|++++|+|-.-.+.... ......+..+.+.++++ .+ -+++-+||.+.+... .....-...++
T Consensus 1 ltIl~tnD~Hg~l~~~~~~----------~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~-~~~~~g~~~~~ 69 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTG----------EYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPE-SDLQDAEPDFR 69 (285)
T ss_pred CEEEEEcccccccccCCCC----------CccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchh-HHhcCcchHHH
Confidence 5799999999654321100 01222223333333332 33 488999996544321 11111112223
Q ss_pred HhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHH
Q 016429 119 PAIASNIPWVAVLGNHDQESTLSREGVMKHIV 150 (390)
Q Consensus 119 ~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~ 150 (390)
.+...+.... ++||||+..+. +.+.+...
T Consensus 70 ~~n~~g~Da~-~~GNHEfD~G~--~~L~~~~~ 98 (285)
T cd07405 70 GMNLVGYDAM-AVGNHEFDNPL--EVLRQQMK 98 (285)
T ss_pred HHHhhCCcEE-eecccccccCH--HHHHHHHh
Confidence 3334566666 55999998764 33444433
No 80
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.49 E-value=2.4e-05 Score=80.99 Aligned_cols=225 Identities=21% Similarity=0.163 Sum_probs=101.7
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCC-CEEEEcCCcCCCCChhhHHHHH-------
Q 016429 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKP-DLIVFTGDNIFGFDATDAAKSL------- 113 (390)
Q Consensus 42 ~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p-D~Vv~~GD~i~~~~~~~~~~~~------- 113 (390)
-.++|++++|+|-.-.+...+.+ .+. .......+..+.+.++++.+ -++|.+||++.+..-.......
T Consensus 114 ~~LtIL~TnDiHg~l~~~dy~~~-~~~---~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~ 189 (814)
T PRK11907 114 VDVRILSTTDLHTNLVNYDYYQD-KPS---QTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGE 189 (814)
T ss_pred eEEEEEEEEeecCCccccccccc-Ccc---ccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCc
Confidence 46999999999976433211111 000 00122222333344444545 4788999977664322211000
Q ss_pred -HHHHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCCC-ccccCccceeEEec---cCCCCCCCCc
Q 016429 114 -NAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDA-HIIDGFGNYNLEIG---GVKGSGFENK 188 (390)
Q Consensus 114 -~~~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~g~~~y~~~~~---~~~~~~~~~~ 188 (390)
.-.+..|..++.. +.++|||||..+. +.+.+++......+-.-+-... .....+.-|.+.-. ..+|.. ..
T Consensus 190 ~~P~i~amN~LGyD-A~tLGNHEFDyG~--d~L~~~l~~a~fPvl~ANV~~~~~~~~~~~PY~I~e~~~~d~~G~~--~~ 264 (814)
T PRK11907 190 QHPMYAALEALGFD-AGTLGNHEFNYGL--DYLEKVIATANMPIVNANVLDPTTGDFLYTPYTIVTKTFTDTEGKK--VT 264 (814)
T ss_pred chHHHHHHhccCCC-EEEechhhcccCH--HHHHHHHHhCCCCEEEeeeeecCCCCccCCCeEEEEEEEecCCCcc--cc
Confidence 0122323334444 4678999997664 3565665543332211111000 00000122332211 101100 00
Q ss_pred ceEEEEEEeCCCCCCCCCCC-CCC-CCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCccc
Q 016429 189 SVLNLYFLDSGDYSTVPSVP-GYG-WIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTG 266 (390)
Q Consensus 189 ~~~~l~~lds~~~~~~~~~~-~~g-~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g 266 (390)
..+-++.+-+..- ...... ..| ..-.+-++-+++...+++++ ....+|++.|..+.... . ..+
T Consensus 265 vKIGiIGlvtp~~-~~w~~~~l~g~v~f~D~veaa~~~v~~Lr~~---------GaDvIIaLsH~G~~~d~--~---~~~ 329 (814)
T PRK11907 265 LNIGITGIVPPQI-LNWDKANLEGKVIVRDAVEAVRDIIPTMRAA---------GADIVLVLSHSGIGDDQ--Y---EVG 329 (814)
T ss_pred eEEEEEEeCchhh-hhcccccccCCeEECCHHHHHHHHHHHHHhc---------CCCEEEEEeCCCccccc--c---ccc
Confidence 1244565544211 000000 011 11223455677777777652 56779999998774310 0 000
Q ss_pred ccCCCCCCCCCChHHHHHHHHcCCeeEEEeccCCC
Q 016429 267 VRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHV 301 (390)
Q Consensus 267 ~~~e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~ 301 (390)
. .|.. ..|.+-.+|++|+.||.|.
T Consensus 330 --~-------En~~--~~LA~v~GIDaIvgGHsH~ 353 (814)
T PRK11907 330 --E-------ENVG--YQIASLSGVDAVVTGHSHA 353 (814)
T ss_pred --c-------cchh--hHHhcCCCCCEEEECCCCC
Confidence 0 1222 1233446799999999999
No 81
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=98.47 E-value=1.5e-05 Score=80.10 Aligned_cols=211 Identities=18% Similarity=0.176 Sum_probs=94.0
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccc-cCCCChhHHHHHHHHHHhcCC-CEEEEcCCcCCCCChhhHHHHHHHHHhHhH
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQV-AGCSDLNTTAFINRMISAEKP-DLIVFTGDNIFGFDATDAAKSLNAAFAPAI 121 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~~p-D~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~ 121 (390)
++|+|++|+|-.-.+............ .+......+..+.+.++++.| -+++.+||.+.+....... .-...+.-+.
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~-~g~~~i~~~N 79 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLYFTLF-GGRADAALMN 79 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhc-CCHHHHHHHh
Confidence 579999999965322110000000000 011222223333333343444 5888999965543211111 1011222222
Q ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCC--CCcccc-Ccccee-EEeccCCCCCCCCcceEEEEEEe
Q 016429 122 ASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPS--DAHIID-GFGNYN-LEIGGVKGSGFENKSVLNLYFLD 197 (390)
Q Consensus 122 ~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~-g~~~y~-~~~~~~~~~~~~~~~~~~l~~ld 197 (390)
..+.. +.++||||+..+. +.+.+++.....++-.-+-. ...... .+.-|. +.+.+ ..+-++.+.
T Consensus 80 ~~g~D-a~~lGNHEFd~G~--~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g---------~kIgiiGl~ 147 (550)
T TIGR01530 80 AAGFD-FFTLGNHEFDAGN--EGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAG---------EKIAIIGLD 147 (550)
T ss_pred ccCCC-EEEeccccccCCH--HHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECC---------eEEEEEEee
Confidence 23433 5688999997654 34555554433222111100 000000 111232 23333 125677775
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCC
Q 016429 198 SGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASV 277 (390)
Q Consensus 198 s~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~ 277 (390)
+.........+..+..-.+.++=+++...+++++ ...-+|+++|......
T Consensus 148 ~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~~---------g~D~II~lsH~g~~~d--------------------- 197 (550)
T TIGR01530 148 TVKKTVESSSPGKDIKFIDEIAAAQIAANALKQQ---------GINKIILLSHAGFEKN--------------------- 197 (550)
T ss_pred cCcccccccCCCCceEECCHHHHHHHHHHHHHhC---------CCCEEEEEecCCcHHH---------------------
Confidence 5221111111111221122333355555556542 4567899999765321
Q ss_pred ChHHHHHHHH-cCCeeEEEeccCCCC
Q 016429 278 NSGFFTTMVA-AGDVKAVFTGHDHVN 302 (390)
Q Consensus 278 ~~~~~~~l~~-~~~v~~v~~GH~H~~ 302 (390)
..|.+ -.+|++|++||.|..
T Consensus 198 -----~~la~~~~~iD~IigGHsH~~ 218 (550)
T TIGR01530 198 -----CEIAQKINDIDVIVSGDSHYL 218 (550)
T ss_pred -----HHHHhcCCCCCEEEeCCCCcc
Confidence 12222 247999999999983
No 82
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.46 E-value=3.3e-05 Score=69.83 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=36.5
Q ss_pred CCeEEEEecChhhhhhccCC-Cc----ccccCCCCCCCCCChHHHHHHHHcCCeeEEEeccCCCCCcc
Q 016429 243 APGLVYFHIPLPEFAYFDQS-NF----TGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFC 305 (390)
Q Consensus 243 ~~~iv~~H~P~~~~~~~~~~-~~----~g~~~e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~ 305 (390)
..-|+++|-|+......... .+ .+. .+.+.....++..+..|++.-+.++.||||.|. .+.
T Consensus 165 ~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~-~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~-~f~ 230 (262)
T cd00844 165 PIDIFLSHDWPRGIYKHGDKKQLLRKKPFF-RQDIESGTLGSPAAEELLKHLKPRYWFSAHLHV-KFA 230 (262)
T ss_pred CCcEEEeCCCCcchhhccchHHhhhcCccc-hhcccccCCCCHHHHHHHHHhCCCEEEEecCCc-ccc
Confidence 46899999977543221100 00 000 011112234667788888888899999999998 444
No 83
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.38 E-value=9.2e-07 Score=74.84 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=43.8
Q ss_pred EEEecccccCCCCCCCCCCCcccccCCCC-hhHHHHHHHHHHh--cCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 47 LQVADMHFANGKTTPCLDVLPSQVAGCSD-LNTTAFINRMISA--EKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~i~~--~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
.++||+|++......... + .... ....+.+.+.+.+ .++|.|+++||++ ..+..... .+.++ +.
T Consensus 2 ~~isD~Hlg~~~~~~~~~--~----~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~-~~~~~~~~---~~~l~---~~ 68 (168)
T cd07390 2 YFTSDTHFGHANILRFCN--R----PFDDVEEMDEALIRNWNETVGPDDTVYHLGDFS-FGGKAGTE---LELLS---RL 68 (168)
T ss_pred eEecccccCCHHHHccCC--C----CCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCC-CCCChHHH---HHHHH---hC
Confidence 479999999753211000 0 0011 1122444444444 3789999999954 44332221 23333 35
Q ss_pred CCCEEEEeCCCCCC
Q 016429 124 NIPWVAVLGNHDQE 137 (390)
Q Consensus 124 ~ip~~~v~GNHD~~ 137 (390)
+.|+++|+||||..
T Consensus 69 ~~~~~~v~GNHD~~ 82 (168)
T cd07390 69 NGRKHLIKGNHDSS 82 (168)
T ss_pred CCCeEEEeCCCCch
Confidence 67999999999973
No 84
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.33 E-value=0.00016 Score=67.37 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=45.4
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc----C-CCEEEEcCCcCCCCChhhHHH-------
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE----K-PDLIVFTGDNIFGFDATDAAK------- 111 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~----~-pD~Vv~~GD~i~~~~~~~~~~------- 111 (390)
++|+|++|+|-..... .....+..+.+.++++ . .-+++.+||.+.+........
T Consensus 1 l~IlhtnD~Hg~~~~~--------------gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~ 66 (313)
T cd08162 1 LQLLHTSDGESGLLAE--------------DDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGD 66 (313)
T ss_pred CeEEEecccccCcccc--------------CCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhcccccccc
Confidence 5799999999543211 1122223333444333 3 348999999554432111100
Q ss_pred HHHHHHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHH
Q 016429 112 SLNAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVT 151 (390)
Q Consensus 112 ~~~~~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~ 151 (390)
.-...+.-|...+.. +.++||||+..+. +.+.+++..
T Consensus 67 ~G~~~i~~mN~~g~D-a~tlGNHEFD~G~--~~L~~~~~~ 103 (313)
T cd08162 67 PGRADILILNALGVQ-AIALGNHEFDLGT--DELADLIRP 103 (313)
T ss_pred CChHHHHHHhccCCc-EEeccccccccCH--HHHHHHHHh
Confidence 001122222234444 4578999987654 345555544
No 85
>PHA02239 putative protein phosphatase
Probab=98.32 E-value=2.3e-06 Score=76.15 Aligned_cols=70 Identities=29% Similarity=0.359 Sum_probs=43.6
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc--CCCEEEEcCCcCCCCChhhHHHHHHHHHhHhH
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE--KPDLIVFTGDNIFGFDATDAAKSLNAAFAPAI 121 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~ 121 (390)
||+++|||+|.. ...+..+.+.++.. ..|.||++||+|.... ...+.+...+. +.
T Consensus 1 m~~~~IsDIHG~--------------------~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~--~s~~v~~~l~~-~~ 57 (235)
T PHA02239 1 MAIYVVPDIHGE--------------------YQKLLTIMDKINNERKPEETIVFLGDYVDRGK--RSKDVVNYIFD-LM 57 (235)
T ss_pred CeEEEEECCCCC--------------------HHHHHHHHHHHhhcCCCCCEEEEecCcCCCCC--ChHHHHHHHHH-Hh
Confidence 689999999931 12234455555433 3599999999665442 22333333332 32
Q ss_pred hCCCCEEEEeCCCCC
Q 016429 122 ASNIPWVAVLGNHDQ 136 (390)
Q Consensus 122 ~~~ip~~~v~GNHD~ 136 (390)
..+.++++++||||.
T Consensus 58 ~~~~~~~~l~GNHE~ 72 (235)
T PHA02239 58 SNDDNVVTLLGNHDD 72 (235)
T ss_pred hcCCCeEEEECCcHH
Confidence 345689999999996
No 86
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.32 E-value=9.8e-05 Score=66.38 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=48.1
Q ss_pred EEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCC
Q 016429 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASN 124 (390)
Q Consensus 45 ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ 124 (390)
||+++.|+=-..+. ......+.+..++.++||+|..||...+..... .+..+.+.+.+
T Consensus 1 ~ilfigdi~g~~G~-----------------~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~-----~~~~~~L~~~G 58 (255)
T cd07382 1 KILFIGDIVGKPGR-----------------KAVKEHLPKLKKEYKIDFVIANGENAAGGKGIT-----PKIAKELLSAG 58 (255)
T ss_pred CEEEEEeCCCHHHH-----------------HHHHHHHHHHHHHCCCCEEEECCccccCCCCCC-----HHHHHHHHhcC
Confidence 57888887633221 122344555555678999999999666542111 12233344578
Q ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHc
Q 016429 125 IPWVAVLGNHDQESTLSREGVMKHIVTL 152 (390)
Q Consensus 125 ip~~~v~GNHD~~~~~~~~~~~~~~~~~ 152 (390)
+.++.+ |||++... ++.+++...
T Consensus 59 ~D~iTl-GNH~fD~g----el~~~l~~~ 81 (255)
T cd07382 59 VDVITM-GNHTWDKK----EILDFIDEE 81 (255)
T ss_pred CCEEEe-cccccCcc----hHHHHHhcC
Confidence 886665 99998665 455555443
No 87
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=98.26 E-value=9.8e-05 Score=75.28 Aligned_cols=104 Identities=23% Similarity=0.246 Sum_probs=51.8
Q ss_pred CeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCC-CEEEEcCCcCCCCChhhHHHH-------HH
Q 016429 43 EFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKP-DLIVFTGDNIFGFDATDAAKS-------LN 114 (390)
Q Consensus 43 ~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p-D~Vv~~GD~i~~~~~~~~~~~-------~~ 114 (390)
.++|++++|+|-.-.+...+.+ .+. .+.....+..+.+.++++.+ -++|-+||++.+..-...... ..
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~-~~~---~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~ 77 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKD-KPT---DKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMH 77 (626)
T ss_pred eEEEEEEcCCccCccCCcccCC-CCC---CCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcC
Confidence 5899999999976433211111 000 01122223333334444433 588889997665532221110 00
Q ss_pred HHHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q 016429 115 AAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLK 153 (390)
Q Consensus 115 ~~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~ 153 (390)
-.++.|...+.. +.++||||+..+. +.+.+.+....
T Consensus 78 p~~~~mN~lgyD-a~tlGNHEFd~G~--~~L~~~~~~a~ 113 (626)
T TIGR01390 78 PVYKAMNLLKYD-VGNLGNHEFNYGL--PFLKQAIAAAK 113 (626)
T ss_pred hHHHHHhhcCcc-EEecccccccccH--HHHHHHHHhCC
Confidence 122223234444 4688999987653 45556555433
No 88
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.25 E-value=2.7e-06 Score=74.17 Aligned_cols=89 Identities=19% Similarity=0.242 Sum_probs=54.5
Q ss_pred eEEEEEecccccCCCCCCC-CCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCCh--hhHHHHHHHHHhHh
Q 016429 44 FKILQVADMHFANGKTTPC-LDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDA--TDAAKSLNAAFAPA 120 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~--~~~~~~~~~~l~~~ 120 (390)
-+.+++||+|++......- --..| .+....+...+.+.++.++|+-||+.||+-.+.+. ..+......+++.+
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP----~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~ 95 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLP----RYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELL 95 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccC----chhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHh
Confidence 4568999999995432100 00011 11234566777778889999999999994333332 23344444444433
Q ss_pred HhCCCCEEEEeCCCCCCC
Q 016429 121 IASNIPWVAVLGNHDQES 138 (390)
Q Consensus 121 ~~~~ip~~~v~GNHD~~~ 138 (390)
+.. -|+++.||||-.-
T Consensus 96 -~~~-evi~i~GNHD~~i 111 (235)
T COG1407 96 -DER-EVIIIRGNHDNGI 111 (235)
T ss_pred -ccC-cEEEEeccCCCcc
Confidence 222 5999999999743
No 89
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=98.24 E-value=2.5e-05 Score=73.85 Aligned_cols=215 Identities=15% Similarity=0.288 Sum_probs=110.2
Q ss_pred HHHHHHhcCCCEEEEcCCcCCCCChhh-------------------------HH-HHH-----HHHHhHhHhCCCCEEEE
Q 016429 82 INRMISAEKPDLIVFTGDNIFGFDATD-------------------------AA-KSL-----NAAFAPAIASNIPWVAV 130 (390)
Q Consensus 82 l~~~i~~~~pD~Vv~~GD~i~~~~~~~-------------------------~~-~~~-----~~~l~~~~~~~ip~~~v 130 (390)
.-+.+.+++|||||+.||.|+.++... .+ ..+ +.-|+.+ ....||++.
T Consensus 160 aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaa-hA~~Pwi~~ 238 (522)
T COG3540 160 AYKTMAKEEPDFVIHLGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAA-HAAFPWIVQ 238 (522)
T ss_pred HHHHHHhcCCCEEEEcCCeeeccCCcccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHh-hccCCEEEE
Confidence 445566788999999999999875321 00 001 1122221 257899999
Q ss_pred eCCCCCCCCCCHH-------------------HHHHHHHHcCCCccccCCCCCccccCccceeEEeccCCCCCCCCcceE
Q 016429 131 LGNHDQESTLSRE-------------------GVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVL 191 (390)
Q Consensus 131 ~GNHD~~~~~~~~-------------------~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~ 191 (390)
+-.|+..++.+.. ....+++-.|.......+ .+.-+=++.++ +.+
T Consensus 239 WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mPiR~~~~p~------~~~lYR~~tyG----------~La 302 (522)
T COG3540 239 WDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMPIRYSSLPT------DGRLYRSFTYG----------PLA 302 (522)
T ss_pred eccccccccccccccccCCCCChHHHHHHHHHHHHHHHHhCccccccCCc------cceeeeeeccc----------ccc
Confidence 9999998764321 111122222222111111 11112223332 237
Q ss_pred EEEEEeCCCCCCCC----CC---------CCCCCCCHHHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhh
Q 016429 192 NLYFLDSGDYSTVP----SV---------PGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAY 258 (390)
Q Consensus 192 ~l~~lds~~~~~~~----~~---------~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~ 258 (390)
.+.+||+..|..+. +. .....+.+.|.+||++.|... +..|.|+..-.|+.....
T Consensus 303 ~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~S------------katWnVia~q~~~~~~~~ 370 (522)
T COG3540 303 DLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGAS------------KATWNVIAQQMPLGLVVF 370 (522)
T ss_pred ceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhc------------chhhhhhhhhcceeEeec
Confidence 79999997775221 11 123448899999999998764 445666666666633110
Q ss_pred ccCCCcccc--cCCCCCCCCCChHHHHHHHHcCCee--EEEeccCCCCCcccccC----------CeEEEecCCCCCCCC
Q 016429 259 FDQSNFTGV--RQEGISSASVNSGFFTTMVAAGDVK--AVFTGHDHVNDFCGRLT----------GIQLCYGGGFGYHAY 324 (390)
Q Consensus 259 ~~~~~~~g~--~~e~~~~~~~~~~~~~~l~~~~~v~--~v~~GH~H~~~~~~~~~----------gi~~~~~~~~g~~~~ 324 (390)
.......+. +..+..-.....+.+..++...++. ++|.|.+|. .+...+. -.+-..+++...+++
T Consensus 371 d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~-~wA~~l~~d~a~~~~~~~f~Efv~tsi~sG~~ 449 (522)
T COG3540 371 DGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHY-SWAHDLDPDFAQFEDFAPFWEFVSTSINSGGF 449 (522)
T ss_pred CCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHH-HHHhhcCcchhcccccCceeeEeeccCcCCCc
Confidence 000000000 0011111112344455555544454 999999998 3433321 124444555566666
Q ss_pred CC
Q 016429 325 GK 326 (390)
Q Consensus 325 ~~ 326 (390)
|+
T Consensus 450 gp 451 (522)
T COG3540 450 GP 451 (522)
T ss_pred CC
Confidence 65
No 90
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.19 E-value=4.3e-06 Score=76.04 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=42.2
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHH-hcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHh
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS-AEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~ 122 (390)
|++++|||+|-. ...++.+.+.+. ..++|.++++||+|... ++..+.+. .+. +
T Consensus 1 M~~~vIGDIHG~--------------------~~~l~~ll~~~~~~~~~D~li~lGDlVdrG--p~s~~vl~-~l~---~ 54 (275)
T PRK00166 1 MATYAIGDIQGC--------------------YDELQRLLEKIDFDPAKDTLWLVGDLVNRG--PDSLEVLR-FVK---S 54 (275)
T ss_pred CcEEEEEccCCC--------------------HHHHHHHHHhcCCCCCCCEEEEeCCccCCC--cCHHHHHH-HHH---h
Confidence 679999999932 222333333332 24689999999966544 23333332 222 3
Q ss_pred CCCCEEEEeCCCCC
Q 016429 123 SNIPWVAVLGNHDQ 136 (390)
Q Consensus 123 ~~ip~~~v~GNHD~ 136 (390)
.+.++++|.||||.
T Consensus 55 l~~~~~~VlGNHD~ 68 (275)
T PRK00166 55 LGDSAVTVLGNHDL 68 (275)
T ss_pred cCCCeEEEecChhH
Confidence 46689999999997
No 91
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.16 E-value=9.3e-06 Score=69.30 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChh---hHH---HHHHHHHhHhH---------------hCCCCEEEEeCCCCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDAT---DAA---KSLNAAFAPAI---------------ASNIPWVAVLGNHDQES 138 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~---~~~---~~~~~~l~~~~---------------~~~ip~~~v~GNHD~~~ 138 (390)
..+..+....+||.|++.||++ +.+.. +.. ..+.+++..-. ..++|++.|+||||...
T Consensus 34 ~~~~~~~~~l~Pd~V~fLGDLf-d~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 34 HIVSMMQFWLKPDAVVVLGDLF-SSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred HHHHHHHHhcCCCEEEEecccc-CCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 4444555568999999999955 44321 111 22222221100 01489999999999854
No 92
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.03 E-value=1.6e-05 Score=69.56 Aligned_cols=48 Identities=19% Similarity=0.018 Sum_probs=29.2
Q ss_pred cCCCEEEEcCCcCCCCChh-hHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 89 EKPDLIVFTGDNIFGFDAT-DAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 89 ~~pD~Vv~~GD~i~~~~~~-~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
.+.|.+|++||++.....+ +..+.+.+......+.+.++++++||||.
T Consensus 31 ~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~ 79 (208)
T cd07425 31 GGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHEL 79 (208)
T ss_pred CCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcH
Confidence 3689999999955443322 11222222222223357889999999997
No 93
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.03 E-value=0.00071 Score=61.05 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=44.6
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHH-HHHHHHHHhcCCCEEEEcCCcCCCC-ChhhHHHHHHHHHhHhH
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTT-AFINRMISAEKPDLIVFTGDNIFGF-DATDAAKSLNAAFAPAI 121 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~i~~~~pD~Vv~~GD~i~~~-~~~~~~~~~~~~l~~~~ 121 (390)
|||+++.|+=-..+ ...+ +.+.++.++.++||+|..||...+. +.+ .+..+.+.
T Consensus 1 m~ilfiGDi~G~~G------------------r~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~------~~~~~~L~ 56 (266)
T TIGR00282 1 IKFLFIGDVYGKAG------------------RKIVKNNLPQLKSKYQADLVIANGENTTHGKGLT------LKIYEFLK 56 (266)
T ss_pred CeEEEEEecCCHHH------------------HHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCC------HHHHHHHH
Confidence 68999999872211 2222 3344444456899999999966543 221 12223344
Q ss_pred hCCCCEEEEeCCCCCCCC
Q 016429 122 ASNIPWVAVLGNHDQEST 139 (390)
Q Consensus 122 ~~~ip~~~v~GNHD~~~~ 139 (390)
+.++.++.+ |||.+...
T Consensus 57 ~~GvDviT~-GNH~~Dkg 73 (266)
T TIGR00282 57 QSGVNYITM-GNHTWFQK 73 (266)
T ss_pred hcCCCEEEc-cchhccCc
Confidence 578998877 99999655
No 94
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=98.00 E-value=1.7e-05 Score=69.49 Aligned_cols=64 Identities=22% Similarity=0.153 Sum_probs=38.8
Q ss_pred EEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh-cCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA-EKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 45 ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
||+++||+|-. ...++.+.+.+.. .++|.|+++||++..... ..+.+ +.+. .
T Consensus 2 ri~~isDiHg~--------------------~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~--~~~~~-~~l~---~- 54 (207)
T cd07424 2 RDFVVGDIHGH--------------------YSLLQKALDAVGFDPARDRLISVGDLIDRGPE--SLACL-ELLL---E- 54 (207)
T ss_pred CEEEEECCCCC--------------------HHHHHHHHHHcCCCCCCCEEEEeCCcccCCCC--HHHHH-HHHh---c-
Confidence 68999999921 1223333333332 468999999996543322 22222 2222 2
Q ss_pred CCCEEEEeCCCCC
Q 016429 124 NIPWVAVLGNHDQ 136 (390)
Q Consensus 124 ~ip~~~v~GNHD~ 136 (390)
.++++|.||||.
T Consensus 55 -~~~~~v~GNhe~ 66 (207)
T cd07424 55 -PWFHAVRGNHEQ 66 (207)
T ss_pred -CCEEEeECCChH
Confidence 368999999996
No 95
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.88 E-value=4.3e-05 Score=68.33 Aligned_cols=42 Identities=29% Similarity=0.285 Sum_probs=26.6
Q ss_pred CCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 91 PDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 91 pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
.|.+|++||+|.... +..+.+ +.+..+.. .-.++++.||||.
T Consensus 38 ~d~lv~lGDlIDrG~--~s~evl-~~l~~l~~-~~~~~~v~GNHE~ 79 (234)
T cd07423 38 GRRAVFVGDLVDRGP--DSPEVL-RLVMSMVA-AGAALCVPGNHDN 79 (234)
T ss_pred CCEEEEECCccCCCC--CHHHHH-HHHHHHhh-CCcEEEEECCcHH
Confidence 689999999666443 233333 23333322 2368899999996
No 96
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=97.81 E-value=0.00014 Score=64.24 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhh-hccC---CCc--ccccCCCCCCCCCChHHHHHHHHcCC
Q 016429 217 QQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFA-YFDQ---SNF--TGVRQEGISSASVNSGFFTTMVAAGD 290 (390)
Q Consensus 217 q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~-~~~~---~~~--~g~~~e~~~~~~~~~~~~~~l~~~~~ 290 (390)
.+-|++..|....+ .+.|+++|.|.-...+. ..|. +++ .|..... -.+..+.+.+...++.+|
T Consensus 254 slpwlk~dl~~~aa----------dgrpv~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaph-ww~a~er~all~~lqGYN 322 (392)
T COG5555 254 SLPWLKVDLIYSAA----------DGRPVYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPH-WWPAPERGALLFFLQGYN 322 (392)
T ss_pred cCcceeccceeecc----------CCCceeehhhhCccceeccccCchhcccccCCCCCCC-CCCCCCcchHHHhhcCce
Confidence 36688877664332 67899999998543321 1221 111 1221111 123344555666677789
Q ss_pred eeEEEeccCCCC
Q 016429 291 VKAVFTGHDHVN 302 (390)
Q Consensus 291 v~~v~~GH~H~~ 302 (390)
|..+++||.|.-
T Consensus 323 vvg~fhGhkhd~ 334 (392)
T COG5555 323 VVGTFHGHKHDF 334 (392)
T ss_pred eEEecccccccc
Confidence 999999999974
No 97
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.76 E-value=6.7e-05 Score=66.29 Aligned_cols=71 Identities=24% Similarity=0.142 Sum_probs=42.6
Q ss_pred ccCCCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh-cCCCEEEEcCCcCCCCChhhHHHHHHHH
Q 016429 38 FRQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA-EKPDLIVFTGDNIFGFDATDAAKSLNAA 116 (390)
Q Consensus 38 ~~~~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~pD~Vv~~GD~i~~~~~~~~~~~~~~~ 116 (390)
++.+.--||.+|||+|-. ...++.+.+.+.. .+.|.++++||+|...+ +..+.+. .
T Consensus 11 ~~~~~~~ri~vigDIHG~--------------------~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp--~s~~vl~-~ 67 (218)
T PRK11439 11 IAGHQWRHIWLVGDIHGC--------------------FEQLMRKLRHCRFDPWRDLLISVGDLIDRGP--QSLRCLQ-L 67 (218)
T ss_pred ccCCCCCeEEEEEcccCC--------------------HHHHHHHHHhcCCCcccCEEEEcCcccCCCc--CHHHHHH-H
Confidence 344444589999999942 2233434444432 26799999999665443 3333332 2
Q ss_pred HhHhHhCCCCEEEEeCCCCC
Q 016429 117 FAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 117 l~~~~~~~ip~~~v~GNHD~ 136 (390)
+. + ..+++|.||||.
T Consensus 68 l~---~--~~~~~v~GNHE~ 82 (218)
T PRK11439 68 LE---E--HWVRAVRGNHEQ 82 (218)
T ss_pred HH---c--CCceEeeCchHH
Confidence 22 2 246789999996
No 98
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.72 E-value=0.00011 Score=64.79 Aligned_cols=71 Identities=23% Similarity=0.232 Sum_probs=41.9
Q ss_pred ccCCCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHH-hcCCCEEEEcCCcCCCCChhhHHHHHHHH
Q 016429 38 FRQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS-AEKPDLIVFTGDNIFGFDATDAAKSLNAA 116 (390)
Q Consensus 38 ~~~~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~ 116 (390)
++.+..=||++|||+|-. ...++.+.+.+. ..+.|.+++.||+|..... ..+.+. .
T Consensus 9 ~~~~~~~ri~visDiHg~--------------------~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~--~~~~l~-~ 65 (218)
T PRK09968 9 INAHHYRHIWVVGDIHGE--------------------YQLLQSRLHQLSFCPETDLLISVGDNIDRGPE--SLNVLR-L 65 (218)
T ss_pred ccCCCCCeEEEEEeccCC--------------------HHHHHHHHHhcCCCCCCCEEEECCCCcCCCcC--HHHHHH-H
Confidence 333443499999999932 222333333333 2468999999996554332 222332 2
Q ss_pred HhHhHhCCCCEEEEeCCCCC
Q 016429 117 FAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 117 l~~~~~~~ip~~~v~GNHD~ 136 (390)
+. + -.+++|.||||.
T Consensus 66 l~---~--~~~~~v~GNHE~ 80 (218)
T PRK09968 66 LN---Q--PWFISVKGNHEA 80 (218)
T ss_pred Hh---h--CCcEEEECchHH
Confidence 22 1 247899999996
No 99
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.69 E-value=0.0001 Score=66.45 Aligned_cols=42 Identities=26% Similarity=0.254 Sum_probs=28.0
Q ss_pred cCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 89 EKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 89 ~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
.+.|.++++||+|...+ +..+.+. .+. +.+..+.+|.||||.
T Consensus 25 ~~~D~Li~lGDlVdRGp--~s~evl~-~l~---~l~~~v~~VlGNHD~ 66 (257)
T cd07422 25 PAKDRLWLVGDLVNRGP--DSLETLR-FVK---SLGDSAKTVLGNHDL 66 (257)
T ss_pred CCCCEEEEecCcCCCCc--CHHHHHH-HHH---hcCCCeEEEcCCchH
Confidence 36799999999665443 3333332 332 344578999999997
No 100
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.67 E-value=0.00015 Score=65.08 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=53.6
Q ss_pred EEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh-----------cCCCEEEEcCCcCCCCCh-------
Q 016429 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA-----------EKPDLIVFTGDNIFGFDA------- 106 (390)
Q Consensus 45 ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-----------~~pD~Vv~~GD~i~~~~~------- 106 (390)
+|+++||+|++.... ....++.|.+.|.. .+...+|++||.|.+.+.
T Consensus 1 ~i~~vSgL~ig~~~~---------------~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~ 65 (257)
T cd07387 1 YIALVSGLGLGGNAE---------------SSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTK 65 (257)
T ss_pred CEEEEcccccCCCcc---------------chHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhh
Confidence 479999999997632 23345677777763 234579999997775432
Q ss_pred ------------hhHHHHHHHHHhHhHhCCCCEEEEeCCCCCCCC
Q 016429 107 ------------TDAAKSLNAAFAPAIASNIPWVAVLGNHDQEST 139 (390)
Q Consensus 107 ------------~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~~~~ 139 (390)
.+.++.++.++..+. ..+|+.++|||||....
T Consensus 66 ~~~~~~~~~~~~~~~~~~ld~~l~~l~-~~i~V~imPG~~Dp~~~ 109 (257)
T cd07387 66 ARYLTKKSSAASVEAVKELDNFLSQLA-SSVPVDLMPGEFDPANH 109 (257)
T ss_pred hhccccccchhhHHHHHHHHHHHHhhh-cCCeEEECCCCCCcccc
Confidence 122445555565543 57999999999998653
No 101
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.60 E-value=0.00018 Score=65.07 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=40.9
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHH-hcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHh
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS-AEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~ 122 (390)
|++.+|+|+|-. ...++.+.+.++ ....|-++++||+|...+ +..+.+. .+..
T Consensus 1 m~~YvIGDIHGc--------------------~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP--~slevL~-~l~~--- 54 (279)
T TIGR00668 1 MATYLIGDLHGC--------------------YDELQALLERVEFDPGQDTLWLTGDLVARGP--GSLEVLR-YVKS--- 54 (279)
T ss_pred CcEEEEEcccCC--------------------HHHHHHHHHHhCcCCCCCEEEEeCCccCCCC--CHHHHHH-HHHh---
Confidence 467899999932 223344444443 235699999999665443 3333332 3332
Q ss_pred CCCCEEEEeCCCCC
Q 016429 123 SNIPWVAVLGNHDQ 136 (390)
Q Consensus 123 ~~ip~~~v~GNHD~ 136 (390)
.+..+.+|.||||.
T Consensus 55 l~~~~~~VlGNHD~ 68 (279)
T TIGR00668 55 LGDAVRLVLGNHDL 68 (279)
T ss_pred cCCCeEEEEChhHH
Confidence 34457799999996
No 102
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.00096 Score=65.17 Aligned_cols=96 Identities=21% Similarity=0.224 Sum_probs=49.1
Q ss_pred ceeccCCCCeEEEEEecccccCCCCCCCCCCCcccccCCCC-hhHHHHHHHHHHhcCCCE-EEEcCCcCCCCC-hhhH--
Q 016429 35 KLRFRQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSD-LNTTAFINRMISAEKPDL-IVFTGDNIFGFD-ATDA-- 109 (390)
Q Consensus 35 ~~~~~~~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~i~~~~pD~-Vv~~GD~i~~~~-~~~~-- 109 (390)
.++-...+..+|.|.||+|-......+ + .....+..+ ......+.+..+...+|+ ++-+|| ..+.. .-+.
T Consensus 34 ii~~~~~~~~nf~hTtdthG~~~~h~~--~--~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD-~hdGtg~sd~~~ 108 (602)
T KOG4419|consen 34 IIRHLNWGQPNFIHTTDTHGWLGSHLR--D--ARYDADFGDFAAFALRMKELADRKGVDVLLVDTGD-LHDGTGLSDATD 108 (602)
T ss_pred heeccccccccceeecccccccccccc--c--hhhhhhhhhHHHHHHHHHHHHhccCCCEEEEeccc-ccCCceeeeccC
Confidence 344455788999999999977542110 0 000011122 223344555555566775 556799 55442 1111
Q ss_pred -HHHHHHHHhHhHhCCCC-EEEEeCCCCCCCC
Q 016429 110 -AKSLNAAFAPAIASNIP-WVAVLGNHDQEST 139 (390)
Q Consensus 110 -~~~~~~~l~~~~~~~ip-~~~v~GNHD~~~~ 139 (390)
.-...+.+..+ .| =..+.|||+++..
T Consensus 109 ~~g~~t~~l~~~----~~yD~l~lGNHEl~~~ 136 (602)
T KOG4419|consen 109 PPGIYTNFLFKM----MPYDILTLGNHELYQA 136 (602)
T ss_pred CchHHHHHHHhc----Cccchhhhcchhhhhh
Confidence 11222333333 23 2456799998764
No 103
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.57 E-value=0.00022 Score=64.17 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=26.6
Q ss_pred CCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 91 PDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 91 pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
-|.+|++||+|... ++..+.+.. +..+. ..-+++++.||||.
T Consensus 37 ~d~li~lGDliDRG--p~S~~vl~~-~~~~~-~~~~~~~l~GNHE~ 78 (245)
T PRK13625 37 QRKLAFVGDLTDRG--PHSLRMIEI-VWELV-EKKAAYYVPGNHCN 78 (245)
T ss_pred CCEEEEECcccCCC--cChHHHHHH-HHHHh-hCCCEEEEeCccHH
Confidence 47999999966543 333434432 22232 23479999999985
No 104
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.55 E-value=0.00039 Score=63.07 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=40.5
Q ss_pred EEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh------cCCCEEEEcCCcCCCCChhhHHHHHHHHHh
Q 016429 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA------EKPDLIVFTGDNIFGFDATDAAKSLNAAFA 118 (390)
Q Consensus 45 ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~------~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~ 118 (390)
++++|+|+|-. ...++.+.+.+.. ...+.+|++||+|.... +..+.+. .+.
T Consensus 3 ~iyaIGDIHG~--------------------~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGP--dS~eVld-~L~ 59 (304)
T cd07421 3 VVICVGDIHGY--------------------ISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGP--ETRKVID-FLI 59 (304)
T ss_pred eEEEEEeccCC--------------------HHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCC--CHHHHHH-HHH
Confidence 68999999932 2344444444432 23578999999665443 2332332 222
Q ss_pred HhHhC--CCCEEEEeCCCCC
Q 016429 119 PAIAS--NIPWVAVLGNHDQ 136 (390)
Q Consensus 119 ~~~~~--~ip~~~v~GNHD~ 136 (390)
.+... ...++++.||||.
T Consensus 60 ~l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 60 SLPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred HhhhcccccceEEEecCChH
Confidence 22222 2258899999996
No 105
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.55 E-value=0.00025 Score=62.82 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=27.4
Q ss_pred CCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 90 KPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 90 ~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
..|.+|++||+|...+ +..+.+. .+..+.+ .-.++++.||||.
T Consensus 33 ~~d~lvflGD~IDRGp--~S~~vl~-~l~~l~~-~~~~~~l~GNHE~ 75 (222)
T cd07413 33 PERQVVFLGDLIDRGP--EIRELLE-IVKSMVD-AGHALAVMGNHEF 75 (222)
T ss_pred CCCEEEEeCcccCCCC--CHHHHHH-HHHHhhc-CCCEEEEEccCcH
Confidence 4689999999665443 3333443 3333322 2378999999996
No 106
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.54 E-value=0.00021 Score=63.44 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
..+.+.+...++|.+|++||++.... ...+.+. .+..+...+.+++++.||||.
T Consensus 14 ~~~l~~~~~~~~d~li~lGD~vdrg~--~~~~~l~-~l~~~~~~~~~~~~l~GNHe~ 67 (225)
T cd00144 14 LRLLEKIGFPPNDKLIFLGDYVDRGP--DSVEVID-LLLALKILPDNVILLRGNHED 67 (225)
T ss_pred HHHHHHhCCCCCCEEEEECCEeCCCC--CcHHHHH-HHHHhcCCCCcEEEEccCchh
Confidence 34444444457899999999665432 2222332 222221114589999999997
No 107
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=97.43 E-value=0.018 Score=51.66 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCCh-HHHHHHHHcCCeeEEEe
Q 016429 218 QFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNS-GFFTTMVAAGDVKAVFT 296 (390)
Q Consensus 218 ~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~-~~~~~l~~~~~v~~v~~ 296 (390)
.+-+++.++++++ ....+|++.|...... ..|.... ++-..+++. ++++|+.
T Consensus 161 ~~~~~~~i~~lr~----------~~D~vIv~~H~G~e~~----------------~~p~~~~~~la~~l~~~-G~D~IiG 213 (239)
T cd07381 161 LERIAADIAEAKK----------KADIVIVSLHWGVEYS----------------YYPTPEQRELARALIDA-GADLVIG 213 (239)
T ss_pred HHHHHHHHHHHhh----------cCCEEEEEecCcccCC----------------CCCCHHHHHHHHHHHHC-CCCEEEc
Confidence 3446666666653 4667899999654110 0111112 233344454 5999999
Q ss_pred ccCCCCCcccccCCeEEEec
Q 016429 297 GHDHVNDFCGRLTGIQLCYG 316 (390)
Q Consensus 297 GH~H~~~~~~~~~gi~~~~~ 316 (390)
||.|....+-.++|..++|+
T Consensus 214 ~H~Hv~q~~E~~~~~~I~YS 233 (239)
T cd07381 214 HHPHVLQGIEIYKGKLIFYS 233 (239)
T ss_pred CCCCcCCCeEEECCEEEEEc
Confidence 99999655555777777765
No 108
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.00054 Score=65.44 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHH-----hcCCCEEEEcCCcCCCCCh---------
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS-----AEKPDLIVFTGDNIFGFDA--------- 106 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-----~~~pD~Vv~~GD~i~~~~~--------- 106 (390)
+..++++++||+|.|...- -.+....+.+.++ +.+..+++++||++.+-+-
T Consensus 223 ~e~v~v~~isDih~GSk~F---------------~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~ 287 (481)
T COG1311 223 DERVYVALISDIHRGSKEF---------------LEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELV 287 (481)
T ss_pred CcceEEEEEeeeecccHHH---------------HHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccc
Confidence 4668999999999986431 1112233333333 2356799999997765531
Q ss_pred ----hhHHHHHHHHHhHhHhCCCCEEEEeCCCCCCC
Q 016429 107 ----TDAAKSLNAAFAPAIASNIPWVAVLGNHDQES 138 (390)
Q Consensus 107 ----~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~~~ 138 (390)
.+.++.+++.|... -..+.+++.|||||...
T Consensus 288 i~di~~qy~~~A~~L~~v-p~~I~v~i~PGnhDa~r 322 (481)
T COG1311 288 IADIYEQYEELAEFLDQV-PEHIKVFIMPGNHDAVR 322 (481)
T ss_pred cccchHHHHHHHHHHhhC-CCCceEEEecCCCCccc
Confidence 12455555555532 24677999999999854
No 109
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=97.15 E-value=0.022 Score=50.52 Aligned_cols=53 Identities=23% Similarity=0.424 Sum_probs=35.3
Q ss_pred HhcCCCEEEEcCCcCCCCCh------------------hhHHHHH----HH-----HHhHhHhCCCCEEEEeCCCCCCCC
Q 016429 87 SAEKPDLIVFTGDNIFGFDA------------------TDAAKSL----NA-----AFAPAIASNIPWVAVLGNHDQEST 139 (390)
Q Consensus 87 ~~~~pD~Vv~~GD~i~~~~~------------------~~~~~~~----~~-----~l~~~~~~~ip~~~v~GNHD~~~~ 139 (390)
.+.+||++|++||.|+.+.. ....+.+ .. .++.+ ...+|++.++.+||+..+
T Consensus 26 ~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~~-~~~~p~~~iwDDHDi~~n 104 (228)
T cd07389 26 SEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQRL-LAQVPTIGIWDDHDIGDN 104 (228)
T ss_pred cccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHHH-hhcCCEEEeccccccccc
Confidence 46899999999999998842 1111111 11 12222 257899999999999865
Q ss_pred C
Q 016429 140 L 140 (390)
Q Consensus 140 ~ 140 (390)
.
T Consensus 105 ~ 105 (228)
T cd07389 105 W 105 (228)
T ss_pred c
Confidence 3
No 110
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=97.12 E-value=0.015 Score=52.05 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=37.1
Q ss_pred CCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCC-hHHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEec
Q 016429 241 APAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVN-SGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYG 316 (390)
Q Consensus 241 ~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~-~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~ 316 (390)
+...+|++.|...... ..|... .++-..+++. ++++|+.||.|.......++|..+.|+
T Consensus 172 ~~D~vIv~~H~G~e~~----------------~~p~~~~~~~A~~l~~~-G~DvIiG~H~H~~~~~e~~~~~~I~Ys 231 (239)
T smart00854 172 KADVVIVSLHWGVEYQ----------------YEPTDEQRELAHALIDA-GADVVIGHHPHVLQPIEIYKGKLIAYS 231 (239)
T ss_pred cCCEEEEEecCccccC----------------CCCCHHHHHHHHHHHHc-CCCEEEcCCCCcCCceEEECCEEEEEc
Confidence 4567999999765210 011111 2344555554 599999999999665556677777665
No 111
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=96.83 E-value=0.0027 Score=60.07 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=21.3
Q ss_pred CCChHHHHHHHHcCCeeEEEeccC
Q 016429 276 SVNSGFFTTMVAAGDVKAVFTGHD 299 (390)
Q Consensus 276 ~~~~~~~~~l~~~~~v~~v~~GH~ 299 (390)
..+...++.+++..++++++=||.
T Consensus 270 ~FG~~~~~~FL~~n~l~~IIRsHe 293 (377)
T cd07418 270 LWGPDCTEEFLEKNNLKLIIRSHE 293 (377)
T ss_pred ccCHHHHHHHHHHcCCcEEEECCC
Confidence 356788899999999999999999
No 112
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=96.61 E-value=0.0054 Score=53.71 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=41.9
Q ss_pred EEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHH----hcCCCEEEEcCCcCCCCChhh----------H-H
Q 016429 46 ILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS----AEKPDLIVFTGDNIFGFDATD----------A-A 110 (390)
Q Consensus 46 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~----~~~pD~Vv~~GD~i~~~~~~~----------~-~ 110 (390)
|+++||+|++... ..++.+.+.+. +.+|+.+|++|+++....... . .
T Consensus 1 Iv~~Sg~~~~~~~------------------~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PF04042_consen 1 IVFASGPFLDSDN------------------LSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEE 62 (209)
T ss_dssp EEEEES--CTTT-------------------HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHH
T ss_pred CEEEecCccCCCH------------------hHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccH
Confidence 6899999988532 23455555554 567999999999776543211 1 1
Q ss_pred HH---HHHHHhHhHhCCCCEEEEeCCCCCCCC
Q 016429 111 KS---LNAAFAPAIASNIPWVAVLGNHDQEST 139 (390)
Q Consensus 111 ~~---~~~~l~~~~~~~ip~~~v~GNHD~~~~ 139 (390)
.. +.+.+..+ ...+++++|||+||....
T Consensus 63 ~~~~~~~~~~~~i-~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 63 DFLKELDSFLESI-LPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp HHHHHCHHHHCCC-HCCSEEEEE--TTCTT-S
T ss_pred HHHHHHHHHHhhc-ccccEEEEeCCCcccccc
Confidence 11 12222222 257899999999998654
No 113
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.41 E-value=0.013 Score=53.39 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=21.1
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCC
Q 016429 277 VNSGFFTTMVAAGDVKAVFTGHDHV 301 (390)
Q Consensus 277 ~~~~~~~~l~~~~~v~~v~~GH~H~ 301 (390)
.+......++++.++++++-||.=.
T Consensus 198 fg~~~~~~Fl~~n~l~~iiR~He~~ 222 (271)
T smart00156 198 FGPDAVDEFLKKNNLKLIIRAHQVV 222 (271)
T ss_pred cCHHHHHHHHHHCCCeEEEecCccc
Confidence 3567788999999999999999744
No 114
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=96.31 E-value=0.077 Score=47.22 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=43.4
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHh
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPA 120 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~ 120 (390)
-+..|++-|||+|--... +. +-..-|+++++|| .+.-+..++...+.+.+-.
T Consensus 59 ~~~~r~VcisdtH~~~~~-----------------------i~---~~p~gDvlihagd-fT~~g~~~ev~~fn~~~gs- 110 (305)
T KOG3947|consen 59 PGYARFVCISDTHELTFD-----------------------IN---DIPDGDVLIHAGD-FTNLGLPEEVIKFNEWLGS- 110 (305)
T ss_pred CCceEEEEecCcccccCc-----------------------cc---cCCCCceEEeccC-CccccCHHHHHhhhHHhcc-
Confidence 466999999999943211 11 2356699999999 6665555544444443332
Q ss_pred HhCCC-CEEEEeCCCCCCCC
Q 016429 121 IASNI-PWVAVLGNHDQEST 139 (390)
Q Consensus 121 ~~~~i-p~~~v~GNHD~~~~ 139 (390)
+.- --++|.|||+....
T Consensus 111 --lph~yKIVIaGNHELtFd 128 (305)
T KOG3947|consen 111 --LPHEYKIVIAGNHELTFD 128 (305)
T ss_pred --CcceeeEEEeeccceeec
Confidence 222 24678999998654
No 115
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=96.26 E-value=0.29 Score=43.53 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCcccc
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQV 159 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~ 159 (390)
+.|.++.++.++||||..|...++... -..+.+.+.+ +.++.++ +.|||=+.. .++.+++.+.+.- .
T Consensus 17 ~~Lp~L~~~~~~DfVIaNgENaa~G~G-it~~~~~~L~----~~GvDvi-T~GNH~wdk----kei~~~i~~~~~i---l 83 (253)
T PF13277_consen 17 EHLPELKEEYGIDFVIANGENAAGGFG-ITPKIAEELF----KAGVDVI-TMGNHIWDK----KEIFDFIDKEPRI---L 83 (253)
T ss_dssp HHHHHHGG--G-SEEEEE-TTTTTTSS---HHHHHHHH----HHT-SEE-E--TTTTSS----TTHHHHHHH-SSE---E
T ss_pred HHHHHHHhhcCCCEEEECCcccCCCCC-CCHHHHHHHH----hcCCCEE-ecCcccccC----cHHHHHHhcCCCc---E
Confidence 445555556799999999997665532 1222333333 3577764 789997743 3455666654432 2
Q ss_pred CCCCC-ccccCccceeEEeccCCCCCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCcc
Q 016429 160 NPSDA-HIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAA 238 (390)
Q Consensus 160 ~p~~~-~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lds~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~ 238 (390)
.|.+. ....|.|+..+...+ ..+-++|-..-.-. ..++ .-..-+++.+++++.
T Consensus 84 RPaN~p~~~pG~G~~i~~~~g-----------~kv~ViNl~Gr~fm------~~~~-~PF~~~d~~l~~l~~-------- 137 (253)
T PF13277_consen 84 RPANYPPGTPGRGYRIFEKNG-----------KKVAVINLMGRVFM------PPID-CPFRAADRLLEELKE-------- 137 (253)
T ss_dssp --TTS-TT-SSBSEEEEEETT-----------EEEEEEEEE--TTS---------S--HHHHHHHHHHH-----------
T ss_pred ECCCCCCCCCcCcEEEEEECC-----------EEEEEEECcccccC------CCCC-ChHHHHHHHHHhccc--------
Confidence 23321 125566777777654 34444443211111 1122 335556666666532
Q ss_pred cCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHHHHHHHcCCeeEEEeccCCCCCcc
Q 016429 239 QKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFC 305 (390)
Q Consensus 239 ~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~ 305 (390)
....+||=+|---..- ..--.+.-.+.|.+|+.=|+|.+-..
T Consensus 138 --~~~~iiVDFHAEaTSE-----------------------K~A~g~~lDGrvsaV~GTHTHVqTaD 179 (253)
T PF13277_consen 138 --ETDIIIVDFHAEATSE-----------------------KQAMGWYLDGRVSAVVGTHTHVQTAD 179 (253)
T ss_dssp ----SEEEEEEE-S-HHH-----------------------HHHHHHHHBTTBSEEEEESSSS-BS-
T ss_pred --cCCEEEEEeecCcHHH-----------------------HHHHHHHhCCcEEEEEeCCCCccCch
Confidence 4566777788532110 11123344568999999999986433
No 116
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.20 E-value=0.021 Score=53.02 Aligned_cols=25 Identities=4% Similarity=0.150 Sum_probs=21.4
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCC
Q 016429 277 VNSGFFTTMVAAGDVKAVFTGHDHV 301 (390)
Q Consensus 277 ~~~~~~~~l~~~~~v~~v~~GH~H~ 301 (390)
.+....+.+++..++++++=||.=.
T Consensus 220 fG~~~~~~Fl~~n~l~~iiR~He~~ 244 (305)
T cd07416 220 YSYRAVCEFLQKNNLLSIIRAHEAQ 244 (305)
T ss_pred cCHHHHHHHHHHcCCeEEEEecccc
Confidence 4567789999999999999999865
No 117
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=95.88 E-value=0.036 Score=51.59 Aligned_cols=26 Identities=4% Similarity=0.124 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHcCCeeEEEeccCCC
Q 016429 276 SVNSGFFTTMVAAGDVKAVFTGHDHV 301 (390)
Q Consensus 276 ~~~~~~~~~l~~~~~v~~v~~GH~H~ 301 (390)
..+......+++..++++++=||.=.
T Consensus 250 ~FG~~~~~~Fl~~n~l~~IIR~He~v 275 (321)
T cd07420 250 YFGPDVTSKVLQKHGLSLLIRSHECK 275 (321)
T ss_pred ccCHHHHHHHHHHCCCcEEEEcChhh
Confidence 35667889999999999999999865
No 118
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=95.74 E-value=0.078 Score=48.08 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=50.3
Q ss_pred cCCCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc--------CCCEEEEcCCcCCCC-----C
Q 016429 39 RQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE--------KPDLIVFTGDNIFGF-----D 105 (390)
Q Consensus 39 ~~~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--------~pD~Vv~~GD~i~~~-----~ 105 (390)
+++...+|+++||+|++.. .+++.|..++... .|-.+|+.|+.+..- .
T Consensus 23 ~~~~~~~~VilSDV~LD~p-------------------~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~ 83 (291)
T PTZ00235 23 KNDKRHNWIIMHDVYLDSP-------------------YTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRN 83 (291)
T ss_pred cCCCceEEEEEEeeccCCH-------------------HHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCC
Confidence 4567799999999999753 4556666665532 388999999955432 1
Q ss_pred hhhHH-HHHHHH----HhH--hHhCCCCEEEEeCCCCCCC
Q 016429 106 ATDAA-KSLNAA----FAP--AIASNIPWVAVLGNHDQES 138 (390)
Q Consensus 106 ~~~~~-~~~~~~----l~~--~~~~~ip~~~v~GNHD~~~ 138 (390)
....+ +.+++. ++. .+.....+++|||-.|-+.
T Consensus 84 ~~~~yk~~Fd~La~llls~fp~L~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 84 FHKVYIKGFEKLSVMLISKFKLILEHCYLIFIPGINDPCA 123 (291)
T ss_pred chHHHHHHHHHHHHHHHHhChHHHhcCeEEEECCCCCCCc
Confidence 11122 222221 211 1235677999999999854
No 119
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=95.72 E-value=0.03 Score=51.58 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=35.2
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCCCCccc-ccCCeEEEecCCCCCCC-CCCCCCCceeEEEEEec
Q 016429 277 VNSGFFTTMVAAGDVKAVFTGHDHVNDFCG-RLTGIQLCYGGGFGYHA-YGKAGWERRARVVVASL 340 (390)
Q Consensus 277 ~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~-~~~gi~~~~~~~~g~~~-~~~~~~~~g~rv~ei~~ 340 (390)
.+...++++++..++++++=||.=..+-.. ..++--+..-+++.|.+ .+ ..+-++.|+.
T Consensus 220 fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~Y~~~~~-----N~~a~l~i~~ 280 (293)
T cd07414 220 FGKDVVAKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFD-----NAGAMMSVDE 280 (293)
T ss_pred cCHHHHHHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCcccCCCC-----ceEEEEEECC
Confidence 466788999999999999999996633222 22332222223444533 22 3456777764
No 120
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=95.70 E-value=0.037 Score=50.81 Aligned_cols=60 Identities=7% Similarity=-0.036 Sum_probs=35.1
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCCCCcc-cccCCeEEEecCCCCCCCCCCCCCCceeEEEEEec
Q 016429 277 VNSGFFTTMVAAGDVKAVFTGHDHVNDFC-GRLTGIQLCYGGGFGYHAYGKAGWERRARVVVASL 340 (390)
Q Consensus 277 ~~~~~~~~l~~~~~v~~v~~GH~H~~~~~-~~~~gi~~~~~~~~g~~~~~~~~~~~g~rv~ei~~ 340 (390)
.+...++.+++..++++++=||.-..+-. ...+|--+..-+++.|.+. ....+-++.|+.
T Consensus 212 fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~----~~n~~a~l~i~~ 272 (285)
T cd07415 212 FGQDVVEEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYR----CGNVASIMELDE 272 (285)
T ss_pred cCHHHHHHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCC----CCceEEEEEECC
Confidence 46678899999999999999999653322 2233422222233444321 123456777763
No 121
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=95.54 E-value=0.13 Score=47.50 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=22.6
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCCCCccc
Q 016429 277 VNSGFFTTMVAAGDVKAVFTGHDHVNDFCG 306 (390)
Q Consensus 277 ~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~ 306 (390)
.++..++.|++.-+..++|+.|.|. .|..
T Consensus 205 LGSp~~~eLL~~LkP~yWfsAHLH~-KFaA 233 (456)
T KOG2863|consen 205 LGSPALEELLEDLKPQYWFSAHLHV-KFAA 233 (456)
T ss_pred cCChHHHHHHHHhCcchhhhhhHhh-HHhh
Confidence 4566677888877889999999998 5544
No 122
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.51 E-value=0.038 Score=51.37 Aligned_cols=26 Identities=8% Similarity=0.236 Sum_probs=22.4
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCCC
Q 016429 277 VNSGFFTTMVAAGDVKAVFTGHDHVN 302 (390)
Q Consensus 277 ~~~~~~~~l~~~~~v~~v~~GH~H~~ 302 (390)
.+...++.+++..++++++=||.-..
T Consensus 229 FG~~~~~~Fl~~n~l~~IiR~Hq~v~ 254 (320)
T PTZ00480 229 FSQEIVQVFLKKHELDLICRAHQVVE 254 (320)
T ss_pred cCHHHHHHHHHhCCCcEEEEcCcccc
Confidence 46688899999999999999998663
No 123
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=95.45 E-value=0.78 Score=41.33 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcccCCCCCeEEEEecChhhhhhccCCCcccccCCCCCCCCC-ChHHHHHHHHcCCeeEE
Q 016429 216 SQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASV-NSGFFTTMVAAGDVKAV 294 (390)
Q Consensus 216 ~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~-~~~~~~~l~~~~~v~~v 294 (390)
.+++.+.+.++++++ +...+|++.|.-..- ...|.. ..++-..+++.+ +++|
T Consensus 168 ~~~~~i~~~i~~~r~----------~~D~vIv~~HwG~e~----------------~~~p~~~q~~~a~~lidaG-aDiI 220 (250)
T PF09587_consen 168 PGIERIKEDIREARK----------KADVVIVSLHWGIEY----------------ENYPTPEQRELARALIDAG-ADII 220 (250)
T ss_pred chHHHHHHHHHHHhc----------CCCEEEEEeccCCCC----------------CCCCCHHHHHHHHHHHHcC-CCEE
Confidence 345778887777763 577899999974311 001111 225566777765 9999
Q ss_pred EeccCCCCCcccccCCeEEEec
Q 016429 295 FTGHDHVNDFCGRLTGIQLCYG 316 (390)
Q Consensus 295 ~~GH~H~~~~~~~~~gi~~~~~ 316 (390)
+.+|-|.-...-.+++..+.|+
T Consensus 221 iG~HpHv~q~~E~y~~~~I~YS 242 (250)
T PF09587_consen 221 IGHHPHVIQPVEIYKGKPIFYS 242 (250)
T ss_pred EeCCCCcccceEEECCEEEEEe
Confidence 9999999766666777777765
No 124
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=95.17 E-value=0.071 Score=49.31 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=22.3
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCCC
Q 016429 277 VNSGFFTTMVAAGDVKAVFTGHDHVN 302 (390)
Q Consensus 277 ~~~~~~~~l~~~~~v~~v~~GH~H~~ 302 (390)
.+...++.+++..++++++=||.-..
T Consensus 213 fg~~~~~~Fl~~n~l~~iiR~He~~~ 238 (303)
T PTZ00239 213 FGAKVTKEFCRLNDLTLICRAHQLVM 238 (303)
T ss_pred cCHHHHHHHHHHCCCcEEEEcChhhc
Confidence 46678899999999999999998663
No 125
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.06 E-value=0.057 Score=49.76 Aligned_cols=60 Identities=10% Similarity=0.035 Sum_probs=35.1
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCCCCccc-ccCCeEEEecCCCCCCCCCCCCCCceeEEEEEec
Q 016429 277 VNSGFFTTMVAAGDVKAVFTGHDHVNDFCG-RLTGIQLCYGGGFGYHAYGKAGWERRARVVVASL 340 (390)
Q Consensus 277 ~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~-~~~gi~~~~~~~~g~~~~~~~~~~~g~rv~ei~~ 340 (390)
.+...++.+++..++++++=||.-..+-.. ..++--+..-+++.|.+.. ....-++.|+.
T Consensus 222 fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~~~----~N~~a~l~i~~ 282 (294)
T PTZ00244 222 FGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEF----DNDAAVMNIDD 282 (294)
T ss_pred cCHHHHHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCccccCCC----CceEEEEEECC
Confidence 466788999999999999999996633222 2233222222334443211 23456777763
No 126
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=95.01 E-value=0.1 Score=48.66 Aligned_cols=59 Identities=7% Similarity=0.092 Sum_probs=35.6
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCCCCc-ccccCCeEEEecCCCCCCC-CCCCCCCceeEEEEEec
Q 016429 277 VNSGFFTTMVAAGDVKAVFTGHDHVNDF-CGRLTGIQLCYGGGFGYHA-YGKAGWERRARVVVASL 340 (390)
Q Consensus 277 ~~~~~~~~l~~~~~v~~v~~GH~H~~~~-~~~~~gi~~~~~~~~g~~~-~~~~~~~~g~rv~ei~~ 340 (390)
.+...+..+++..++++++-||.=..+- ....+|.-+..-+++.|.+ +++ ..-++.|+.
T Consensus 231 fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N-----~ga~~~i~~ 291 (316)
T cd07417 231 FGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGN-----KGAFIRITG 291 (316)
T ss_pred eCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCc-----ceEEEEEeC
Confidence 4567888999999999999999965322 2223443222223444532 332 355777763
No 127
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=94.80 E-value=0.48 Score=41.65 Aligned_cols=106 Identities=20% Similarity=0.305 Sum_probs=60.6
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
|||+++.|+=-..+. ....+.|..+..+.++|||++.|-..++.-. -.++.+...+ +.
T Consensus 1 mriLfiGDvvGk~Gr-----------------~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~G-it~k~y~~l~----~~ 58 (266)
T COG1692 1 MRILFIGDVVGKPGR-----------------KAVKEHLPQLKSKYKIDFVIVNGENAAGGFG-ITEKIYKELL----EA 58 (266)
T ss_pred CeEEEEecccCcchH-----------------HHHHHHhHHHHHhhcCcEEEEcCccccCCcC-CCHHHHHHHH----Hh
Confidence 689999998644321 1122445555556899999999996665532 2222333333 35
Q ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHcCCCccccCCCC-CccccCccceeEEecc
Q 016429 124 NIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSD-AHIIDGFGNYNLEIGG 179 (390)
Q Consensus 124 ~ip~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~g~~~y~~~~~~ 179 (390)
++.+ ++.|||=.. ..++.+++.+.++- ..|.+ .....|.|+..+...+
T Consensus 59 G~dv-iT~GNH~wd----~~ei~~~i~~~~~i---lRP~N~p~~~~G~G~~~f~~ng 107 (266)
T COG1692 59 GADV-ITLGNHTWD----QKEILDFIDNADRI---LRPANYPDGTPGKGSRIFKING 107 (266)
T ss_pred CCCE-Eeccccccc----chHHHHHhhcccce---eccCCCCCCCCcceEEEEEeCC
Confidence 7765 578999763 33555665543332 22222 1125566766666655
No 128
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.36 E-value=0.1 Score=42.92 Aligned_cols=44 Identities=30% Similarity=0.334 Sum_probs=31.9
Q ss_pred cCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCC
Q 016429 89 EKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHD 135 (390)
Q Consensus 89 ~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD 135 (390)
.+.|++++.|| +.+....+ ..+.+.+....+..+|.|++-|||+
T Consensus 25 gpFd~~ic~Gd-ff~~~~~~--~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 25 GPFDALLCVGD-FFGDDEDD--EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CCeeEEEEecC-ccCCccch--hhHHHHhcCCccCCCCEEEECCCCC
Confidence 46799999999 55443322 3455555555568899999999996
No 129
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=94.18 E-value=0.2 Score=46.75 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=35.3
Q ss_pred CChHHHHHHHHcCCeeEEEeccC-CCCCcccccCCeEEEecCCCCCCC-CCCCCCCceeEEEEEec
Q 016429 277 VNSGFFTTMVAAGDVKAVFTGHD-HVNDFCGRLTGIQLCYGGGFGYHA-YGKAGWERRARVVVASL 340 (390)
Q Consensus 277 ~~~~~~~~l~~~~~v~~v~~GH~-H~~~~~~~~~gi~~~~~~~~g~~~-~~~~~~~~g~rv~ei~~ 340 (390)
.+...++.+++..++++++=||. ...-+....+|--+..-+++.|.+ ++ ..+-++.|+.
T Consensus 240 fg~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~-----n~~ai~~i~~ 300 (311)
T cd07419 240 FGPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAG-----NAGAILVLGR 300 (311)
T ss_pred ECHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCC-----ceEEEEEECC
Confidence 46678899999999999999998 332333334442222223444532 23 3456777764
No 130
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.36 E-value=0.66 Score=37.39 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEecCCCCCCCCCCCC---CCceeEEEEEecccccccCCCCcCceEE
Q 016429 280 GFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAG---WERRARVVVASLEKTEKRGWGDVKSIKT 356 (390)
Q Consensus 280 ~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~~~~~~---~~~g~rv~ei~~~~~~~~~~~~~~~~~t 356 (390)
+.+..|.+.-+|+..+.||+|.- ..+..+|--+ .++++.-++|+... ..+.|-+++|.. ....+
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f-~Aye~eg~ff-vnPGSaTGAfn~~~t~~~~PSFvLmDiqg-----------~~~v~ 163 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKF-EAYEHEGKFF-VNPGSATGAFNVSDTDIIVPSFVLMDIQG-----------STVVT 163 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeE-EEEEeCCcEE-eCCCcccCCCcccccCCCCCceEEEEecC-----------CEEEE
Confidence 55677777779999999999982 2334455444 45555555555422 457888888862 45677
Q ss_pred EE-EccCCC
Q 016429 357 WK-RLDDEH 364 (390)
Q Consensus 357 w~-r~~~~~ 364 (390)
|. |+-++.
T Consensus 164 YvY~lidge 172 (183)
T KOG3325|consen 164 YVYRLIDGE 172 (183)
T ss_pred EEeeeeCCc
Confidence 74 344554
No 131
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=86.37 E-value=5 Score=38.47 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=49.7
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh---cCCCEEEEcCCcCCCCChhhHHHHHHHHH
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA---EKPDLIVFTGDNIFGFDATDAAKSLNAAF 117 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l 117 (390)
..+-+|+++||+|++. ...++.+..++.. ..|-++|+.|-....-........+++-+
T Consensus 280 ~~d~~fVfLSdV~LD~-------------------~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f 340 (525)
T KOG3818|consen 280 NTDTSFVFLSDVFLDD-------------------KKVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGF 340 (525)
T ss_pred CcCceEEEEehhcccc-------------------HHHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHH
Confidence 4567789999999874 4455666666654 46789999999443322222222232222
Q ss_pred hHhH-------h--CCCCEEEEeCCCCCCCC
Q 016429 118 APAI-------A--SNIPWVAVLGNHDQEST 139 (390)
Q Consensus 118 ~~~~-------~--~~ip~~~v~GNHD~~~~ 139 (390)
..+. + .+..+++|||-.|-+..
T Consensus 341 ~~LA~~l~~~~~~~ekT~fIFVPGP~Dp~~~ 371 (525)
T KOG3818|consen 341 RWLAAQLTCFRKDYEKTQFIFVPGPNDPWVD 371 (525)
T ss_pred HHHHhhccccccccccceEEEecCCCCCCcC
Confidence 2211 1 35679999999998753
No 132
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=81.13 E-value=2.7 Score=36.15 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=11.1
Q ss_pred CeeEEEeccCCC
Q 016429 290 DVKAVFTGHDHV 301 (390)
Q Consensus 290 ~v~~v~~GH~H~ 301 (390)
+++++||||+|.
T Consensus 144 ~~dl~lSGHtHg 155 (193)
T cd08164 144 KPGLILTGHDHE 155 (193)
T ss_pred CCCEEEeCccCC
Confidence 589999999998
No 133
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=80.13 E-value=0.72 Score=34.61 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=12.0
Q ss_pred eehHHHHHHHHHHhhccccccc
Q 016429 10 ALVIVAVLTLLCIAPTLAVNAK 31 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~ 31 (390)
.|+|+|+|++++|+++.++|+.
T Consensus 6 ~llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhHH
Confidence 4455555556666665555543
No 134
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=79.28 E-value=6.6 Score=34.48 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCC
Q 016429 79 TAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGN 133 (390)
Q Consensus 79 ~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GN 133 (390)
.+.|.+..++-+--.=+++|| +..|..+.+.++.+.+.+||+-+|||=
T Consensus 65 i~~m~~a~~~Gk~VvRLhSGD-------psiYgA~~EQm~~L~~~gI~yevvPGV 112 (254)
T COG2875 65 IDLMVDAVREGKDVVRLHSGD-------PSIYGALAEQMRELEALGIPYEVVPGV 112 (254)
T ss_pred HHHHHHHHHcCCeEEEeecCC-------hhHHHHHHHHHHHHHHcCCCeEEeCCc
Confidence 344444444445556789999 445667777777788899999999993
No 135
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=78.09 E-value=9.9 Score=31.64 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=32.3
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCCh
Q 016429 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDA 106 (390)
Q Consensus 41 ~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~ 106 (390)
++.+.|-+-++++|..+....- + .....++.+...+.......|.+.|. .+..+.
T Consensus 43 ~~~~~i~l~~~v~F~~~sa~L~----~------~~~~~L~~ia~~l~~~~~~~v~I~Gh-TD~~G~ 97 (160)
T PRK09967 43 AGDWSLGLSDAILFAKNDYKLL----P------ESQQQIQTMAAKLASTGLTHARMDGH-TDNYGE 97 (160)
T ss_pred CCceEEEcCCceeeCCCccccC----H------HHHHHHHHHHHHHHhCCCceEEEEEE-cCCCCC
Confidence 4567676778888886653210 0 12334455556665554567888887 555544
No 136
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=75.79 E-value=2.7 Score=42.19 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCCC
Q 016429 77 NTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (390)
Q Consensus 77 ~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~~ 137 (390)
++...+..+|+..-+|-+-+.|| |++.|.. .. .++..++. .--+=+-+||||.-
T Consensus 171 ~fI~al~~lIqrL~VDhLHIvGD-IyDRGp~-pd----~ImD~Lm~-~hsvDIQWGNHDIl 224 (640)
T PF06874_consen 171 EFIIALSELIQRLAVDHLHIVGD-IYDRGPR-PD----KIMDRLMN-YHSVDIQWGNHDIL 224 (640)
T ss_pred HHHHHHHHHHHHHhhhheeeccc-ccCCCCC-hh----HHHHHHhc-CCCccccccchHHH
Confidence 45566677777789999999999 7777642 22 23333321 22456778999985
No 137
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=72.89 E-value=7.7 Score=36.77 Aligned_cols=45 Identities=29% Similarity=0.397 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeC
Q 016429 78 TTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLG 132 (390)
Q Consensus 78 ~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~G 132 (390)
.+..+.+++..++||+|++.|| - .+.+...+... ..++|++-+-|
T Consensus 55 ~~~~~~~~~~~~~Pd~Vlv~GD-~--------~~~la~alaA~-~~~ipv~Hiea 99 (346)
T PF02350_consen 55 AIIELADVLEREKPDAVLVLGD-R--------NEALAAALAAF-YLNIPVAHIEA 99 (346)
T ss_dssp HHHHHHHHHHHHT-SEEEEETT-S--------HHHHHHHHHHH-HTT-EEEEES-
T ss_pred HHHHHHHHHHhcCCCEEEEEcC-C--------chHHHHHHHHH-HhCCCEEEecC
Confidence 4566777777899999999999 2 12333333322 37999988753
No 138
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=67.68 E-value=13 Score=35.35 Aligned_cols=51 Identities=29% Similarity=0.418 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEE-eCCCCCC
Q 016429 77 NTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAV-LGNHDQE 137 (390)
Q Consensus 77 ~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v-~GNHD~~ 137 (390)
+.+..+.+++.+++||+|++-|| .+ . .+...+... ..+||+.-+ -|+-=+.
T Consensus 79 ~~i~~~~~vl~~~kPD~VlVhGD-T~-----t---~lA~alaa~-~~~IpV~HvEAGlRt~~ 130 (383)
T COG0381 79 NIIEGLSKVLEEEKPDLVLVHGD-TN-----T---TLAGALAAF-YLKIPVGHVEAGLRTGD 130 (383)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCC-cc-----h---HHHHHHHHH-HhCCceEEEecccccCC
Confidence 45677888888999999999999 32 1 222222221 258998866 5765443
No 139
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=66.53 E-value=32 Score=28.43 Aligned_cols=53 Identities=13% Similarity=0.262 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcC---CcCCCCChhhHHHHHHHHHhHhHh--CCCCEEEE
Q 016429 78 TTAFINRMISAEKPDLIVFTG---DNIFGFDATDAAKSLNAAFAPAIA--SNIPWVAV 130 (390)
Q Consensus 78 ~~~~l~~~i~~~~pD~Vv~~G---D~i~~~~~~~~~~~~~~~l~~~~~--~~ip~~~v 130 (390)
.+..+.+.+...+||.|++.. |+..+.......+.+.++++.+.+ .+.+++++
T Consensus 38 ~~~~~~~~~~~~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 38 CLHYFDRLVLPYQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred HHHHHHhhhccCCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 334445555556999988854 743333333444556666665544 24566654
No 140
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=65.85 E-value=6.7 Score=34.46 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=19.5
Q ss_pred CeeEEEeccCCCCCcccccCCeEEEecCCCCCC
Q 016429 290 DVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYH 322 (390)
Q Consensus 290 ~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~ 322 (390)
+.++|++||+|.. .....++...+.+| +.|+
T Consensus 179 ~~~~vv~GHTh~~-~~~~~~~~i~IDtG-s~~g 209 (218)
T PRK09968 179 GADYFIFGHMMFD-NIQTFANQIYIDTG-SPKS 209 (218)
T ss_pred CCCEEEECCCCcC-cceeECCEEEEECC-CCCC
Confidence 4689999999984 44445564444444 3443
No 141
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=62.64 E-value=13 Score=30.50 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=33.3
Q ss_pred CeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHHHHHHHcCCeeEEEeccCCC
Q 016429 244 PGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHV 301 (390)
Q Consensus 244 ~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~ 301 (390)
.-|+++|.|+....... .. .. + ......++..++.+++.-+.++.||||.|.
T Consensus 70 ~DILlTh~wP~gi~~~~--~~-~~--~-~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~ 121 (150)
T cd07380 70 VDILLTSEWPKGISKLS--KV-PF--E-ETLLICGSDLIAELAKKLKPRYHFAGLEGV 121 (150)
T ss_pred CCEEECCCCchhhhhhC--CC-cc--c-ccccCCCCHHHHHHHHHcCCCeEeecCCCc
Confidence 47999999885532211 00 00 0 011234667788888887889999999996
No 142
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=60.81 E-value=24 Score=33.68 Aligned_cols=49 Identities=37% Similarity=0.410 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEE-EeCCCCC
Q 016429 78 TTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVA-VLGNHDQ 136 (390)
Q Consensus 78 ~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~-v~GNHD~ 136 (390)
.+..+.+++.+++||+|++.|| .+ ..+...+... .+++|++- --|++-.
T Consensus 81 ~~~~~~~~~~~~~Pd~vlv~GD-~~--------~~la~alaA~-~~~IPv~HveaG~rs~ 130 (365)
T TIGR03568 81 TIIGFSDAFERLKPDLVVVLGD-RF--------EMLAAAIAAA-LLNIPIAHIHGGEVTE 130 (365)
T ss_pred HHHHHHHHHHHhCCCEEEEeCC-ch--------HHHHHHHHHH-HhCCcEEEEECCccCC
Confidence 3466777778899999999999 22 1232232221 36999994 4676744
No 143
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=55.36 E-value=53 Score=26.99 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCEEEEc-C--CcCCCCChhhHHHHHHHHHhHhHh--CCCCEEEE
Q 016429 80 AFINRMISAEKPDLIVFT-G--DNIFGFDATDAAKSLNAAFAPAIA--SNIPWVAV 130 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~-G--D~i~~~~~~~~~~~~~~~l~~~~~--~~ip~~~v 130 (390)
+.+.+.+ ..+||+|++. | |+..+.......+.+.+.+..+.+ .+.+++++
T Consensus 39 ~~l~~~~-~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 39 ARLDEDV-ALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred HHHHHHh-ccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4454444 5789988775 4 643333333445566666666655 56777664
No 144
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=54.37 E-value=22 Score=31.75 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=28.5
Q ss_pred CCCCeEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcC
Q 016429 40 QNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNI 101 (390)
Q Consensus 40 ~~~~~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i 101 (390)
.+++.+|++.||++--.. ....+.+.+.+||++++.|=..
T Consensus 173 ~dg~~~i~faSDvqGp~~----------------------~~~l~~i~e~~P~v~ii~GPpt 212 (304)
T COG2248 173 TDGKSSIVFASDVQGPIN----------------------DEALEFILEKRPDVLIIGGPPT 212 (304)
T ss_pred ecCCeEEEEcccccCCCc----------------------cHHHHHHHhcCCCEEEecCCch
Confidence 478899999999983221 1123445567999999999944
No 145
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=54.08 E-value=18 Score=31.42 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=18.4
Q ss_pred HHHHHHHcCCeeEEEeccCCCCC
Q 016429 281 FFTTMVAAGDVKAVFTGHDHVND 303 (390)
Q Consensus 281 ~~~~l~~~~~v~~v~~GH~H~~~ 303 (390)
.+..+++..+.+++++||+|...
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~ 180 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEG 180 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeec
Confidence 45667777788999999999854
No 146
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=53.44 E-value=15 Score=31.84 Aligned_cols=28 Identities=32% Similarity=0.313 Sum_probs=18.1
Q ss_pred CeeEEEeccCCCCCcccccCCeEEEecCC
Q 016429 290 DVKAVFTGHDHVNDFCGRLTGIQLCYGGG 318 (390)
Q Consensus 290 ~v~~v~~GH~H~~~~~~~~~gi~~~~~~~ 318 (390)
+.+.+++||+|.. .....++...+.+|+
T Consensus 168 ~~~~iV~GHTh~~-~~~~~~~~i~ID~Gs 195 (207)
T cd07424 168 GVDAVVHGHTPVK-RPLRLGNVLYIDTGA 195 (207)
T ss_pred CCCEEEECCCCCC-cceEECCEEEEECCC
Confidence 3578999999994 444455554444443
No 147
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=52.29 E-value=35 Score=29.77 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=31.4
Q ss_pred cCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCC
Q 016429 89 EKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNH 134 (390)
Q Consensus 89 ~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNH 134 (390)
...|++|++|| .-...+.-.++...++++-....+.+.+++.|--
T Consensus 82 ~~~Dliil~Gd-~Q~~~~~gqyel~~~~Ld~a~e~g~~~IyTLGGy 126 (258)
T COG2047 82 GERDLIILVGD-TQATSSEGQYELTGKILDIAKEFGARMIYTLGGY 126 (258)
T ss_pred CCCcEEEEecc-ccccCcchhHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 46699999999 5444444455555566665556788988888754
No 148
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=51.64 E-value=16 Score=35.34 Aligned_cols=52 Identities=19% Similarity=0.147 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQES 138 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~~~ 138 (390)
-.+...++..-+|.+=+.|| |++.+. ...... ..+..+- .+-+-+||||.-+
T Consensus 180 ~ala~~iqrLvVDhLHiVGD-IyDRGP-~pd~Im-d~L~~yh----svDiQWGNHDilW 231 (648)
T COG3855 180 IALAYLIQRLVVDHLHIVGD-IYDRGP-YPDKIM-DTLINYH----SVDIQWGNHDILW 231 (648)
T ss_pred HHHHHHHHHHhhhheeeecc-cccCCC-CchHHH-HHHhhcc----cccccccCcceEE
Confidence 34444555678899999999 777753 212222 2222221 2345579999853
No 149
>PRK09738 small toxic polypeptide; Provisional
Probab=51.43 E-value=35 Score=22.37 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=17.7
Q ss_pred cccCCCCCeehHHHHHHHHHHhhcccccccCCcceeccCC
Q 016429 2 MVHRKKKPALVIVAVLTLLCIAPTLAVNAKQERKLRFRQN 41 (390)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (390)
||-|+| .++++++++|+.++.++.--...-..+++++.
T Consensus 1 mkmp~~--~~~~~livvCiTvL~f~~l~r~sLCEl~i~~g 38 (52)
T PRK09738 1 MKLPRS--PLVWCVLIVCLTLLIFTYLTRKSLCELRYRDG 38 (52)
T ss_pred CCCccc--eehhhHHHHHHHHHHHHHHccCCceEEEEecC
Confidence 664433 55555555554443333333333344555533
No 150
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=51.26 E-value=25 Score=31.50 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=26.0
Q ss_pred EEEEcCCcCCCCCh----hhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 93 LIVFTGDNIFGFDA----TDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 93 ~Vv~~GD~i~~~~~----~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
-++++||.++..+. ......+.+.++.+.++.....++|| |++
T Consensus 120 ~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~~i~pG-H~~ 166 (248)
T TIGR03413 120 PALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYCA-HEY 166 (248)
T ss_pred CEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEECC-CCc
Confidence 48999997765421 11223344555555555555677888 886
No 151
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=50.26 E-value=41 Score=27.63 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhH-h-CCCCEEEEeCCCCC
Q 016429 76 LNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAI-A-SNIPWVAVLGNHDQ 136 (390)
Q Consensus 76 ~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~-~-~~ip~~~v~GNHD~ 136 (390)
....+.+.+.|...+||+|+++|. +.......+.+.+.++... + ..-++-++..|-+.
T Consensus 49 ~~~~~~l~~~i~~~kP~vI~v~g~---~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~~~ 108 (150)
T PF14639_consen 49 EEDMERLKKFIEKHKPDVIAVGGN---SRESRKLYDDVRDIVEELDEDEQMPPIPVVIVDDEV 108 (150)
T ss_dssp HHHHHHHHHHHHHH--SEEEE--S---STHHHHHHHHHHHHHHHTTB-TTS-B--EEE---TT
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCC---ChhHHHHHHHHHHHHHHhhhcccCCCceEEEECcHH
Confidence 455677888999999999999886 2223344445555555432 1 11245567777665
No 152
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=49.84 E-value=33 Score=32.17 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHhcCCCEEEEcCCcCCCCC-hhhHHHHHHHHHhHhHh--CCCCE
Q 016429 76 LNTTAFINRMISAEKPDLIVFTGDNIFGFD-ATDAAKSLNAAFAPAIA--SNIPW 127 (390)
Q Consensus 76 ~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~-~~~~~~~~~~~l~~~~~--~~ip~ 127 (390)
...++.+.++++..+||+||++|=.+-..- ..+..+.+.++...+.+ .++|+
T Consensus 224 m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~ 278 (478)
T KOG4184|consen 224 MRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPV 278 (478)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCch
Confidence 446677888888899999999996443332 23334445555554433 34453
No 153
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=49.61 E-value=25 Score=33.04 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=35.8
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCCCCcccccCCeEEEec-CCCCCCCCCCCCCCceeEEEEEec
Q 016429 277 VNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYG-GGFGYHAYGKAGWERRARVVVASL 340 (390)
Q Consensus 277 ~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~-~~~g~~~~~~~~~~~g~rv~ei~~ 340 (390)
.+...++++.+..++++++-||.=..+......+-.++.- .++.|.+.- ...+-+..|+.
T Consensus 231 fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~----~n~gavm~Vd~ 291 (331)
T KOG0374|consen 231 FGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEF----DNAGAVMRVDK 291 (331)
T ss_pred ecHHHHHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhcccc----CCceEEEEECC
Confidence 4567788899999999999999877544433444433322 233443321 12345666663
No 154
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=47.99 E-value=17 Score=32.78 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=21.9
Q ss_pred CChhHHHHHHHHHHhcCCCEEEEcCC
Q 016429 74 SDLNTTAFINRMISAEKPDLIVFTGD 99 (390)
Q Consensus 74 ~~~~~~~~l~~~i~~~~pD~Vv~~GD 99 (390)
.+.+..+.+.+++++.+||.||+||-
T Consensus 137 ~E~eqp~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 137 KEKEMPEKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred cchhchHHHHHHHHHhCCCEEEEeCc
Confidence 45556688999999999999999993
No 155
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=47.84 E-value=40 Score=33.08 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=31.7
Q ss_pred HHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCCC
Q 016429 84 RMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (390)
Q Consensus 84 ~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~~ 137 (390)
+.|...+||.|+++|= +.+.+. +......+.+..+ ..++| +++.||-|..
T Consensus 114 ~~I~~~~PDIILLaGG-tDGG~~-e~~l~NA~~La~~-~~~~p-IIyAGN~~a~ 163 (463)
T TIGR01319 114 EAIEESNLDIILFAGG-TDGGEE-ECGIHNAKMLAEH-GLDCA-IIVAGNKDIQ 163 (463)
T ss_pred HHHhhcCCCEEEEeCC-cCCCch-HHHHHHHHHHHhc-CCCCc-EEEeCCHHHH
Confidence 3445589999999999 666543 3323344455533 35677 4556998863
No 156
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=47.81 E-value=8.8 Score=31.42 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=10.6
Q ss_pred CcccCCCCCeehHHHH
Q 016429 1 MMVHRKKKPALVIVAV 16 (390)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (390)
||+++|+|..++++.+
T Consensus 1 m~~~~~~rl~~~~~~~ 16 (148)
T PRK13254 1 MMKRKRRRLLIILGAL 16 (148)
T ss_pred CCccchhHHHHHHHHH
Confidence 7888777775555444
No 157
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=46.19 E-value=99 Score=28.74 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~~ 137 (390)
+....-+.+.+||.|++.|--..= .++ +...++ +.++++.=+.|+.-++
T Consensus 65 es~~~eI~~lnpd~VLIIGGp~AV--s~~----yE~~Lk---s~GitV~RigG~nR~E 113 (337)
T COG2247 65 ESVLDEIIELNPDLVLIIGGPIAV--SPN----YENALK---SLGITVKRIGGANRYE 113 (337)
T ss_pred HHHHHHHHhhCCceEEEECCCCcC--Chh----HHHHHH---hCCcEEEEecCcchHH
Confidence 334555567899999998872221 122 223333 4688888888886553
No 158
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=46.09 E-value=21 Score=32.42 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=22.3
Q ss_pred CChhHHHHHHHHHHhcCCCEEEEcCC
Q 016429 74 SDLNTTAFINRMISAEKPDLIVFTGD 99 (390)
Q Consensus 74 ~~~~~~~~l~~~i~~~~pD~Vv~~GD 99 (390)
.+.+..+.+.+++.+.+||.||+||-
T Consensus 138 ~E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 138 PEKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 55667788999999999999999994
No 159
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=45.59 E-value=1.1e+02 Score=26.55 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCC
Q 016429 81 FINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIP 126 (390)
Q Consensus 81 ~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip 126 (390)
...++.+..+.+.++++||.-.. ++.+-....+.+.+.++|
T Consensus 84 aA~~ly~~gKV~~LLlSGDN~~~-----sYnEp~tM~kdL~~~GVp 124 (235)
T COG2949 84 AAIALYKAGKVNYLLLSGDNATV-----SYNEPRTMRKDLIAAGVP 124 (235)
T ss_pred HHHHHHhcCCeeEEEEecCCCcc-----cccchHHHHHHHHHcCCC
Confidence 33444456799999999995332 222333445556667888
No 160
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=44.65 E-value=1e+02 Score=25.54 Aligned_cols=10 Identities=10% Similarity=0.342 Sum_probs=4.8
Q ss_pred eEEEEEeccc
Q 016429 44 FKILQVADMH 53 (390)
Q Consensus 44 ~ki~~iSDlH 53 (390)
|||+++.|-=
T Consensus 1 ~~i~~~GDSi 10 (183)
T cd04501 1 MRVVCLGDSI 10 (183)
T ss_pred CeEEEEcccc
Confidence 3455555543
No 161
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=44.27 E-value=75 Score=28.10 Aligned_cols=51 Identities=14% Similarity=0.250 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhH-hCCCCEEEEeCCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAI-ASNIPWVAVLGNHDQ 136 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~-~~~ip~~~v~GNHD~ 136 (390)
..+.+.+....-|+|++.|= . +- ..+...+.++.+. ...+|++.-||||..
T Consensus 31 ~ei~~~~~~~GTDaImIGGS-~-gv----t~~~~~~~v~~ik~~~~lPvilfP~~~~~ 82 (240)
T COG1646 31 DEIAEAAAEAGTDAIMIGGS-D-GV----TEENVDNVVEAIKERTDLPVILFPGSPSG 82 (240)
T ss_pred HHHHHHHHHcCCCEEEECCc-c-cc----cHHHHHHHHHHHHhhcCCCEEEecCChhc
Confidence 34555666678999999996 1 11 1223445555554 578999999999975
No 162
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=43.24 E-value=1e+02 Score=24.14 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHD 135 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD 135 (390)
+....+|+..+..|||++.| +. |.........+. .+.++|+.+++-=++
T Consensus 33 ~e~~Kai~~g~a~LVviA~D-v~----P~~~~~~l~~lc--~~~~vpyv~V~sk~~ 81 (116)
T COG1358 33 NEVTKAIERGKAKLVVIAED-VS----PEELVKHLPALC--EEKNVPYVYVGSKKE 81 (116)
T ss_pred HHHHHHHHcCCCcEEEEecC-CC----HHHHHHHHHHHH--HhcCCCEEEeCCHHH
Confidence 44556666788999999999 53 222212212222 247999999975443
No 163
>PRK11627 hypothetical protein; Provisional
Probab=42.31 E-value=15 Score=31.48 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=14.8
Q ss_pred CcccCCCCCeehHHHHHHHHHHhhcccccccCCcceeccC
Q 016429 1 MMVHRKKKPALVIVAVLTLLCIAPTLAVNAKQERKLRFRQ 40 (390)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (390)
|||+ +++.++++++ +++|+++ ++++.+.+
T Consensus 1 mlkk--------lll~l~a~~~-L~gCA~~--p~~l~l~P 29 (192)
T PRK11627 1 MLKK--------ILFPLVALFM-LAGCATP--SNTLEVSP 29 (192)
T ss_pred ChHH--------HHHHHHHHHH-HHhhcCC--CCEEEeCC
Confidence 8888 3333333333 4455544 45666643
No 164
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=41.67 E-value=9.8 Score=34.31 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=28.2
Q ss_pred CCeehHHHHHHHHHHhhcccccccCCcceeccCCCCeEEEEEec
Q 016429 8 KPALVIVAVLTLLCIAPTLAVNAKQERKLRFRQNGEFKILQVAD 51 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~iSD 51 (390)
+..+.++++++++|++++ +++.++..--.+.+.+.++|+.-.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~i~~~g~l~vg~~~~ 47 (259)
T PRK11917 5 KSLLKLAVFALGACVAFS-NANAAEGKLESIKSKGQLIVGVKND 47 (259)
T ss_pred HHHHHHHHHHhhcccccc-ccCCccchHHHHHhCCEEEEEECCC
Confidence 345666666666666444 4555555555677889999998766
No 165
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=41.22 E-value=1.3e+02 Score=27.18 Aligned_cols=78 Identities=14% Similarity=0.236 Sum_probs=44.9
Q ss_pred EEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCC
Q 016429 46 ILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNI 125 (390)
Q Consensus 46 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~i 125 (390)
|.+++|+|......- ......+.....+....+|.|+++|. -++.... .+.+.++-+. .++
T Consensus 141 v~ilaDV~~kh~~~l-------------~~~~~~~~~~~a~~~~~aDaviVtG~-~TG~~~~--~~~l~~vr~~---~~~ 201 (254)
T PF03437_consen 141 VKILADVHVKHSSPL-------------ATRDLEEAAKDAVERGGADAVIVTGK-ATGEPPD--PEKLKRVREA---VPV 201 (254)
T ss_pred eEEEeeechhhcccC-------------CCCCHHHHHHHHHHhcCCCEEEECCc-ccCCCCC--HHHHHHHHhc---CCC
Confidence 778889987755431 12223344556666789999999999 6766432 2233322221 347
Q ss_pred CEEEEeCCCCCCCCCCHHHHHHHH
Q 016429 126 PWVAVLGNHDQESTLSREGVMKHI 149 (390)
Q Consensus 126 p~~~v~GNHD~~~~~~~~~~~~~~ 149 (390)
|+++--| .+.+.+.+++
T Consensus 202 PVlvGSG-------vt~~Ni~~~l 218 (254)
T PF03437_consen 202 PVLVGSG-------VTPENIAEYL 218 (254)
T ss_pred CEEEecC-------CCHHHHHHHH
Confidence 8886444 4445555544
No 166
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.16 E-value=1e+02 Score=25.99 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCCEEEEc
Q 016429 80 AFINRMISAEKPDLIVFT 97 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~ 97 (390)
+.+...+.+.+||+|++.
T Consensus 49 ~~~~~~l~~~~pd~vii~ 66 (200)
T cd01829 49 EKLKELIAEEKPDVVVVF 66 (200)
T ss_pred HHHHHHHhcCCCCEEEEE
Confidence 446666777899999988
No 167
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=41.14 E-value=30 Score=17.89 Aligned_cols=16 Identities=0% Similarity=-0.027 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhcccc
Q 016429 13 IVAVLTLLCIAPTLAV 28 (390)
Q Consensus 13 ~~~~~~~~~~~~~~~~ 28 (390)
++++..++|++..+++
T Consensus 4 laiMaa~s~~~~v~ta 19 (21)
T PF12393_consen 4 LAIMAAASMMTAVGTA 19 (21)
T ss_pred HHHHHHHHHHHHhccc
Confidence 5556666677665443
No 168
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=40.58 E-value=41 Score=30.18 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=26.1
Q ss_pred EEEcCCcCCCCCh----hhHHHHHHHHHhHhHhCCCCEEEEeCCCCCC
Q 016429 94 IVFTGDNIFGFDA----TDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (390)
Q Consensus 94 Vv~~GD~i~~~~~----~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~~ 137 (390)
++++||.++..+. ......+.+.++.+.+++....+.|| |++.
T Consensus 122 ~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~~l~~~t~i~pg-H~y~ 168 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLFEGTASQMYQSLKKINALPDDTLICCA-HEYT 168 (251)
T ss_pred cEEEcCeeccCCcCCCCCCCHHHHHHHHHHHHcCCCCEEEECC-CCCh
Confidence 6999997765431 11223444555555556666777888 9874
No 169
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=40.25 E-value=1.3e+02 Score=21.96 Aligned_cols=43 Identities=9% Similarity=0.092 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEe
Q 016429 81 FINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVL 131 (390)
Q Consensus 81 ~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~ 131 (390)
...+.++....-+|++++| +. +.....+ ..-..+.++|+.+++
T Consensus 20 qt~Kai~kg~~~~v~iA~D-a~----~~vv~~l---~~lceek~Ip~v~V~ 62 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAED-VE----VYLMTRV---LSQINQKNIPVSFFK 62 (84)
T ss_pred HHHHHHhcCCceEEEEeCC-CC----HHHHHHH---HHHHHHcCCCEEEEC
Confidence 3455666678899999999 54 2222233 222335899999986
No 170
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=39.72 E-value=1.1e+02 Score=23.39 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEe
Q 016429 78 TTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVL 131 (390)
Q Consensus 78 ~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~ 131 (390)
..+.+.+.+++.++|+||++---.......-.-....+.+. ..++|+.++|
T Consensus 90 ~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~ 140 (140)
T PF00582_consen 90 VADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLR---HAPCPVLVVP 140 (140)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHH---HTSSEEEEEE
T ss_pred cchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHH---cCCCCEEEeC
Confidence 44667777777888988888762111111111122223333 3678888875
No 171
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=39.48 E-value=9.8 Score=30.46 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=0.0
Q ss_pred cccCCCCCeehHHHHHHH
Q 016429 2 MVHRKKKPALVIVAVLTL 19 (390)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (390)
||++|||..++++.++++
T Consensus 1 ~~~~~~rl~~~~~~~~~i 18 (131)
T PF03100_consen 1 MKRRKKRLILVVLGLVII 18 (131)
T ss_dssp ------------------
T ss_pred CCcceeehhhHHHHHHHH
Confidence 788888877776666333
No 172
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=39.41 E-value=1.4e+02 Score=24.44 Aligned_cols=7 Identities=43% Similarity=0.710 Sum_probs=3.6
Q ss_pred EEEEEec
Q 016429 45 KILQVAD 51 (390)
Q Consensus 45 ki~~iSD 51 (390)
||+++.|
T Consensus 2 ~i~~~GD 8 (177)
T cd01822 2 TILALGD 8 (177)
T ss_pred eEEEEcc
Confidence 4555555
No 173
>PRK15222 putative pilin structural protein SafD; Provisional
Probab=39.16 E-value=15 Score=29.88 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=10.8
Q ss_pred CCC-EEEEeCCCCCCC
Q 016429 124 NIP-WVAVLGNHDQES 138 (390)
Q Consensus 124 ~ip-~~~v~GNHD~~~ 138 (390)
+.| .|++.|.||...
T Consensus 80 g~p~~Yil~G~~ds~h 95 (156)
T PRK15222 80 NTPTVLLLSGQQDPRH 95 (156)
T ss_pred CCccEEEEECCCCCcc
Confidence 344 788889998744
No 174
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=39.04 E-value=1.1e+02 Score=26.54 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHh-CCCCEEEEeCCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA-SNIPWVAVLGNHDQ 136 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~-~~ip~~~v~GNHD~ 136 (390)
..+...+.+...|++++.|=. +- +.+ .+.+.++.+.+ .++|++.-|||++.
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~--gv-t~~---~~~~~v~~ik~~~~lPvilfp~~~~~ 65 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSL--GI-VES---NLDQTVKKIKKITNLPVILFPGNVNG 65 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcC--CC-CHH---HHHHHHHHHHhhcCCCEEEECCCccc
Confidence 334445556678999999861 11 112 23333333333 57999999999985
No 175
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=39.01 E-value=1.4e+02 Score=23.01 Aligned_cols=51 Identities=16% Similarity=0.014 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCC--CCEEEEeCCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASN--IPWVAVLGNHDQ 136 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~--ip~~~v~GNHD~ 136 (390)
+.+.+.+.+.+||+|.++.= .... ...+.+.++.+.+.. -+.+++-|+|-.
T Consensus 40 ~~l~~~~~~~~pdvV~iS~~-~~~~-----~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 40 EEIVEAAKEEDADAIGLSGL-LTTH-----MTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHHHHHcCCCEEEEecc-cccc-----HHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 56777788899999999875 2221 122233333332332 356788899854
No 176
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.67 E-value=82 Score=30.77 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=30.2
Q ss_pred HHHHHHHHhcC-CCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCC
Q 016429 80 AFINRMISAEK-PDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNH 134 (390)
Q Consensus 80 ~~l~~~i~~~~-pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNH 134 (390)
+.+.++-+... .|++++.|+ .+++.+.+ ..+.+.........||.|+.-+|-
T Consensus 23 ~rI~~v~Kk~GpFd~liCvGn-fF~~~~~~--~e~~~ykng~~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 23 KRIQKVNKKSGPFDLLICVGN-FFGHDTQN--AEVEKYKNGTKKVPIPTYFLGDNA 75 (528)
T ss_pred HHHHHHhhcCCCceEEEEecc-cCCCccch--hHHHHHhcCCccCceeEEEecCCC
Confidence 33433333344 699999999 67653322 223333333334678888887765
No 177
>TIGR02184 Myco_arth_vir_N Mycoplasma virulence family signal region. This model represents the N-terminal region, including a probable signal sequence or signal anchor which in most instances has four consecutive Lys residues before the hydrophobic stretch, of a family of large, virulence-associated proteins in Mycoplasma arthritidis and smaller proteins in Mycoplasma capricolum.
Probab=38.42 E-value=20 Score=20.85 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=9.0
Q ss_pred cccCCCCCeehHHHHHHHHHH
Q 016429 2 MVHRKKKPALVIVAVLTLLCI 22 (390)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (390)
|.+.||+.--.+.+.+++.++
T Consensus 1 M~~~KKKKnkIl~~al~a~l~ 21 (33)
T TIGR02184 1 MYFSKKKKNKIATLVIVTSLL 21 (33)
T ss_pred CchhhhhhhheehHHHHHHHH
Confidence 444444444444444444333
No 178
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.48 E-value=1.1e+02 Score=25.64 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=18.6
Q ss_pred hcCCCEEEEc-C--CcCCCCChhhHHHHHHHHHhHhHh--CCCCEEE
Q 016429 88 AEKPDLIVFT-G--DNIFGFDATDAAKSLNAAFAPAIA--SNIPWVA 129 (390)
Q Consensus 88 ~~~pD~Vv~~-G--D~i~~~~~~~~~~~~~~~l~~~~~--~~ip~~~ 129 (390)
..+||+|++. | |+..........+.+.++++.+.+ .+.++++
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv 111 (191)
T cd01836 65 ETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVV 111 (191)
T ss_pred cCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 4566666553 2 422222222333444445554443 3455544
No 179
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=37.07 E-value=52 Score=29.10 Aligned_cols=31 Identities=19% Similarity=0.026 Sum_probs=18.8
Q ss_pred CeeEEEeccCCCCCcccccCCeEEEecCCCCCC
Q 016429 290 DVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYH 322 (390)
Q Consensus 290 ~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~ 322 (390)
+.+.+++||+|.. .....++...+-+| +.|+
T Consensus 181 ~~~~vv~GHt~~~-~~~~~~~~i~IDtG-av~g 211 (234)
T cd07423 181 GDALVVYGHTPVP-EPRWLNNTINIDTG-CVFG 211 (234)
T ss_pred CCeEEEECCCCCc-cceEeCCEEEEECC-CCCC
Confidence 4679999999994 33444554444333 3444
No 180
>PF13941 MutL: MutL protein
Probab=35.76 E-value=87 Score=30.92 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=31.2
Q ss_pred HHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCCC
Q 016429 84 RMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (390)
Q Consensus 84 ~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~~ 137 (390)
+.|...+||+|+++|= +.+.+. +......+.+... ...+| +++-||-+..
T Consensus 118 ~~i~~~~PDiILLaGG-tDgG~~-~~il~nA~~La~~-~~~~p-VIyAGN~~a~ 167 (457)
T PF13941_consen 118 EEIREIRPDIILLAGG-TDGGNK-EVILHNAEMLAEA-NLRIP-VIYAGNKAAQ 167 (457)
T ss_pred HHHhccCCCEEEEeCC-ccCCch-HHHHHHHHHHHhC-CCCCc-EEEECCHHHH
Confidence 3466789999999998 665543 3333333444432 34556 5567998863
No 181
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=34.78 E-value=37 Score=31.30 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=6.5
Q ss_pred CeeEEEeccC
Q 016429 290 DVKAVFTGHD 299 (390)
Q Consensus 290 ~v~~v~~GH~ 299 (390)
|.++.+.|..
T Consensus 186 N~~Y~~~G~~ 195 (292)
T PRK13861 186 NWHYVAQGDR 195 (292)
T ss_pred cceEEecCCC
Confidence 5667777754
No 182
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=34.63 E-value=1.7e+02 Score=26.11 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=43.1
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
-+|-+++|+|....... ......+.+.+.+..-.+|.|+++|= -++..... +.+..+ .. ..
T Consensus 144 ~~v~vlADv~VKHa~~l-------------~~~~~~~~v~dtver~~aDaVI~tG~-~TG~~~d~--~el~~a-~~--~~ 204 (263)
T COG0434 144 SRVKVLADVHVKHAVHL-------------GNRSLEEAVKDTVERGLADAVIVTGS-RTGSPPDL--EELKLA-KE--AV 204 (263)
T ss_pred CCcEEEeecchhccccc-------------CCcCHHHHHHHHHHccCCCEEEEecc-cCCCCCCH--HHHHHH-Hh--cc
Confidence 35678899998765431 12234456667777789999999999 77664321 223222 11 14
Q ss_pred CCCEEEEeC
Q 016429 124 NIPWVAVLG 132 (390)
Q Consensus 124 ~ip~~~v~G 132 (390)
++|+++--|
T Consensus 205 ~~pvlvGSG 213 (263)
T COG0434 205 DTPVLVGSG 213 (263)
T ss_pred CCCEEEecC
Confidence 588887555
No 183
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=34.48 E-value=50 Score=28.47 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=9.9
Q ss_pred CCeEEEEEeccccc
Q 016429 42 GEFKILQVADMHFA 55 (390)
Q Consensus 42 ~~~ki~~iSDlH~~ 55 (390)
...+++.+||-.-+
T Consensus 54 ~~G~~~yis~~q~~ 67 (206)
T COG3017 54 ARGRLAYISDQQRG 67 (206)
T ss_pred ecceEEEEcCCCcc
Confidence 56788999984433
No 184
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.23 E-value=1.6e+02 Score=24.15 Aligned_cols=66 Identities=18% Similarity=0.325 Sum_probs=42.0
Q ss_pred eEEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhC
Q 016429 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (390)
Q Consensus 44 ~ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~ 123 (390)
|-+++++|+|+-..... ....+.+++---+..-|+.+|. +.. .+.++.+. .+.
T Consensus 1 mLvL~lgD~HiP~Ra~~-----------------Lp~KFkklLvPgki~hilctGN-lcs---~e~~dylk-~l~----- 53 (183)
T KOG3325|consen 1 MLVLVLGDLHIPHRAND-----------------LPAKFKKLLVPGKIQHILCTGN-LCS---KESYDYLK-TLS----- 53 (183)
T ss_pred CEEEEeccccCCccccc-----------------cCHHHHhccCCCceeEEEEeCC-cch---HHHHHHHH-hhC-----
Confidence 34789999998764321 1245666765568889999999 543 23343333 222
Q ss_pred CCCEEEEeCCCCCC
Q 016429 124 NIPWVAVLGNHDQE 137 (390)
Q Consensus 124 ~ip~~~v~GNHD~~ 137 (390)
-.+-+|.|.-|.+
T Consensus 54 -~dvhiVrGeFD~~ 66 (183)
T KOG3325|consen 54 -SDVHIVRGEFDEN 66 (183)
T ss_pred -CCcEEEecccCcc
Confidence 2577899987764
No 185
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=34.17 E-value=1.3e+02 Score=26.56 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCEEEEcCCc-CCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 82 INRMISAEKPDLIVFTGDN-IFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 82 l~~~i~~~~pD~Vv~~GD~-i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
..+.+.+...|++++.|=. ++. + .+.+.++.+.+..+|++.-|||++.
T Consensus 19 ~~~~~~~~gtdai~vGGS~~vt~----~---~~~~~v~~ik~~~lPvilfp~~~~~ 67 (223)
T TIGR01768 19 IAKAAAESGTDAILIGGSQGVTY----E---KTDTLIEALRRYGLPIILFPSNPTN 67 (223)
T ss_pred HHHHHHhcCCCEEEEcCCCcccH----H---HHHHHHHHHhccCCCEEEeCCCccc
Confidence 4445556788999999962 322 1 3334444444566999999999985
No 186
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=33.68 E-value=1.4e+02 Score=26.91 Aligned_cols=50 Identities=14% Similarity=0.283 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
..+...|+..+.-+||+++| ++ +.....+...+ ....++|++++.+=.+.
T Consensus 138 n~VtklIekkKAkLVIIA~D-Vs----P~t~kk~LP~L--C~k~~VPY~iv~sK~eL 187 (266)
T PTZ00365 138 NHVTDLVEYKKAKLVVIAHD-VD----PIELVCFLPAL--CRKKEVPYCIIKGKSRL 187 (266)
T ss_pred HHHHHHHHhCCccEEEEeCC-CC----HHHHHHHHHHH--HhccCCCEEEECCHHHH
Confidence 34455566678999999999 54 22222222222 22479999988864433
No 187
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=33.63 E-value=2e+02 Score=24.23 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=11.7
Q ss_pred ccCCCCeEEEEEecccc
Q 016429 38 FRQNGEFKILQVADMHF 54 (390)
Q Consensus 38 ~~~~~~~ki~~iSDlH~ 54 (390)
|.+....+|+++.|--.
T Consensus 5 ~~~~~~~~iv~~GDSit 21 (191)
T PRK10528 5 FRAAAADTLLILGDSLS 21 (191)
T ss_pred cccCCCCEEEEEeCchh
Confidence 33444678999998765
No 188
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=32.36 E-value=49 Score=28.93 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=29.7
Q ss_pred CCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHh-CCCCEEEEeCCCCCCC-CCCHHHHHHHHHH
Q 016429 90 KPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA-SNIPWVAVLGNHDQES-TLSREGVMKHIVT 151 (390)
Q Consensus 90 ~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~-~~ip~~~v~GNHD~~~-~~~~~~~~~~~~~ 151 (390)
...-+.+.|| |.+. +..+.+.++.+.. .....+++.| |+-. +....+..+++.+
T Consensus 15 ~~~ri~vigD-IHG~-----~~~L~~lL~~i~~~~~~D~li~lG--DlvDrGp~s~~vl~~l~~ 70 (218)
T PRK11439 15 QWRHIWLVGD-IHGC-----FEQLMRKLRHCRFDPWRDLLISVG--DLIDRGPQSLRCLQLLEE 70 (218)
T ss_pred CCCeEEEEEc-ccCC-----HHHHHHHHHhcCCCcccCEEEEcC--cccCCCcCHHHHHHHHHc
Confidence 3346789999 8765 2345555554321 2456778888 4422 2333455555543
No 189
>PF09610 Myco_arth_vir_N: Mycoplasma virulence signal region (Myco_arth_vir_N); InterPro: IPR011732 This entry represents the N-terminal region of a family of large, virulence-associated proteins in Mycoplasma arthritidis and smaller proteins in Mycoplasma capricolum. It includes a probable signal sequence or signal anchor, which, in most instances, has four consecutive Lys residues before the hydrophobic stretch.
Probab=32.06 E-value=37 Score=19.73 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=9.8
Q ss_pred cccCCCCCeehHHHHHHHHHH
Q 016429 2 MVHRKKKPALVIVAVLTLLCI 22 (390)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (390)
|-+.||+..-.+.+.+++.++
T Consensus 1 Ms~~KKKK~~Il~la~~a~l~ 21 (33)
T PF09610_consen 1 MSFLKKKKIKILTLALTASLL 21 (33)
T ss_pred CchhhhhhhhhhhHHHHHHHH
Confidence 344455544444444455444
No 190
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=31.18 E-value=78 Score=27.96 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=13.5
Q ss_pred CCCEEEEeCCCCCCCCC
Q 016429 124 NIPWVAVLGNHDQESTL 140 (390)
Q Consensus 124 ~ip~~~v~GNHD~~~~~ 140 (390)
+..+.+..|||+...+-
T Consensus 127 nknvvvlagnhein~ng 143 (318)
T PF13258_consen 127 NKNVVVLAGNHEINFNG 143 (318)
T ss_pred ccceEEEecCceeccCc
Confidence 44699999999987654
No 191
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=31.12 E-value=1.4e+02 Score=24.58 Aligned_cols=49 Identities=29% Similarity=0.363 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHD 135 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD 135 (390)
+...+++..++||+|++.-| .+. ..+.+ ..+..+.+.++|++++.==-|
T Consensus 68 ~v~~~~l~~~~~D~ii~VvD-a~~-----l~r~l-~l~~ql~e~g~P~vvvlN~~D 116 (156)
T PF02421_consen 68 RVARDYLLSEKPDLIIVVVD-ATN-----LERNL-YLTLQLLELGIPVVVVLNKMD 116 (156)
T ss_dssp HHHHHHHHHTSSSEEEEEEE-GGG-----HHHHH-HHHHHHHHTTSSEEEEEETHH
T ss_pred HHHHHHHhhcCCCEEEEECC-CCC-----HHHHH-HHHHHHHHcCCCEEEEEeCHH
Confidence 44456666789999999999 322 22222 234445568999998875444
No 192
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=30.93 E-value=1.8e+02 Score=21.37 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
..+.+.+....||++++-.+ +.+....+ .+. .+... ...+|++++-.++|.
T Consensus 33 ~~~~~~~~~~~~d~iiid~~-~~~~~~~~---~~~-~i~~~-~~~~~ii~~t~~~~~ 83 (112)
T PF00072_consen 33 EEALELLKKHPPDLIIIDLE-LPDGDGLE---LLE-QIRQI-NPSIPIIVVTDEDDS 83 (112)
T ss_dssp HHHHHHHHHSTESEEEEESS-SSSSBHHH---HHH-HHHHH-TTTSEEEEEESSTSH
T ss_pred HHHHHHhcccCceEEEEEee-eccccccc---ccc-ccccc-cccccEEEecCCCCH
Confidence 44556777889999999988 54433222 232 22222 257888888877663
No 193
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=30.40 E-value=1.8e+02 Score=24.82 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=15.9
Q ss_pred HHHHHHHHHHh----------cCCCEEEEcCCc
Q 016429 78 TTAFINRMISA----------EKPDLIVFTGDN 100 (390)
Q Consensus 78 ~~~~l~~~i~~----------~~pD~Vv~~GD~ 100 (390)
+.+.+.++++. .-++|++-+||.
T Consensus 52 t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~ 84 (190)
T PRK10903 52 SVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGF 84 (190)
T ss_pred HHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCc
Confidence 44566666653 347999999994
No 194
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=30.09 E-value=74 Score=28.39 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=23.9
Q ss_pred CEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCCCC
Q 016429 92 DLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQES 138 (390)
Q Consensus 92 D~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~~~ 138 (390)
-=-++.||.+... -... +.+.-.+.--...+-.+..+.|||+...
T Consensus 71 t~YLFLGDyVDRG-~~Sv-Et~lLLl~lK~rYP~ritLiRGNHEsRq 115 (303)
T KOG0372|consen 71 TNYLFLGDYVDRG-YYSV-ETFLLLLALKVRYPDRITLIRGNHESRQ 115 (303)
T ss_pred CceEeecchhccc-cchH-HHHHHHHHHhhcCcceeEEeeccchhhh
Confidence 3567899955433 2222 2222111111123445889999999754
No 195
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=29.98 E-value=1e+02 Score=24.46 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=9.5
Q ss_pred CCCEEEEcCCc
Q 016429 90 KPDLIVFTGDN 100 (390)
Q Consensus 90 ~pD~Vv~~GD~ 100 (390)
+.|+|+.+|-.
T Consensus 58 ~~DlvittGG~ 68 (133)
T cd00758 58 EADLVLTTGGT 68 (133)
T ss_pred cCCEEEECCCC
Confidence 48999999993
No 196
>PRK04081 hypothetical protein; Provisional
Probab=29.78 E-value=67 Score=27.45 Aligned_cols=21 Identities=38% Similarity=0.374 Sum_probs=15.4
Q ss_pred cccCCCCCeehHHHHHHHHHH
Q 016429 2 MVHRKKKPALVIVAVLTLLCI 22 (390)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (390)
|||+||..-..|+-.+.++++
T Consensus 1 mkhikkI~d~~~~gglga~~~ 21 (207)
T PRK04081 1 MKHIKKISDYAIVGGLGALVM 21 (207)
T ss_pred CcchhhhhhhhhhhhHHHHHH
Confidence 899999888877766544444
No 197
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=29.41 E-value=42 Score=29.83 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=20.3
Q ss_pred CeeEEEeccCCCCCcccccCCeEEEecCC
Q 016429 290 DVKAVFTGHDHVNDFCGRLTGIQLCYGGG 318 (390)
Q Consensus 290 ~v~~v~~GH~H~~~~~~~~~gi~~~~~~~ 318 (390)
..+++++||.|.. ....++|..++..|+
T Consensus 191 ~p~vii~Gh~h~~-~~~~~~~~~~vn~Gs 218 (243)
T cd07386 191 VPDILHTGHVHVY-GVGVYRGVLLVNSGT 218 (243)
T ss_pred CCCEEEECCCCch-HhEEECCEEEEECCC
Confidence 4689999999994 444567777665554
No 198
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=29.21 E-value=1.4e+02 Score=26.62 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=31.5
Q ss_pred HHHHhcCCCEEEEcCCc-CCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 84 RMISAEKPDLIVFTGDN-IFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 84 ~~i~~~~pD~Vv~~GD~-i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
+.+.+...|++++.|=. ++. +.+.+.++.+.+..+|++.-|||++.
T Consensus 26 ~~~~~~gtdai~vGGS~~vt~-------~~~~~~v~~ik~~~lPvilfp~~~~~ 72 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVTE-------ENVDELVKAIKEYDLPVILFPGNIEG 72 (232)
T ss_pred HHHHhcCCCEEEEcCCCccch-------HHHHHHHHHHhcCCCCEEEeCCCccc
Confidence 45556788999999962 331 23444444444567999999999985
No 199
>PRK10116 universal stress protein UspC; Provisional
Probab=28.91 E-value=2.3e+02 Score=22.13 Aligned_cols=9 Identities=22% Similarity=0.693 Sum_probs=4.4
Q ss_pred CCeEEEEEe
Q 016429 42 GEFKILQVA 50 (390)
Q Consensus 42 ~~~ki~~iS 50 (390)
..+.++++.
T Consensus 32 a~l~ll~v~ 40 (142)
T PRK10116 32 GKISLITLA 40 (142)
T ss_pred CEEEEEEEc
Confidence 345555554
No 200
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=28.49 E-value=1.6e+02 Score=27.84 Aligned_cols=44 Identities=27% Similarity=0.392 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEe
Q 016429 78 TTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVL 131 (390)
Q Consensus 78 ~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~ 131 (390)
.+..+.+.+.+.+||+|+.-|| .. . .+...+.. ...++|++.+-
T Consensus 74 ~~~~l~~~l~~~~pDiv~~~gd-~~-----~---~la~a~aa-~~~~ipv~h~~ 117 (365)
T TIGR00236 74 MLEGLEELLLEEKPDIVLVQGD-TT-----T---TLAGALAA-FYLQIPVGHVE 117 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEeCC-ch-----H---HHHHHHHH-HHhCCCEEEEe
Confidence 4466777788899999999999 21 1 12112211 13689998764
No 201
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=27.98 E-value=88 Score=26.98 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=22.4
Q ss_pred cCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCE--------------EEEeCCCCCC
Q 016429 89 EKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPW--------------VAVLGNHDQE 137 (390)
Q Consensus 89 ~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~--------------~~v~GNHD~~ 137 (390)
..||+|++++= . .....+ ....+.+||+ |.+|||.|..
T Consensus 107 ~~Pdlliv~dp-~------~~~~Av----~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~ 158 (196)
T TIGR01012 107 REPEVVVVTDP-R------ADHQAL----KEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGR 158 (196)
T ss_pred CCCCEEEEECC-c------cccHHH----HHHHHcCCCEEEEeeCCCCCccCCEEECCCCchH
Confidence 46999998732 1 111122 2233468886 7788998863
No 202
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=27.54 E-value=96 Score=27.15 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=22.5
Q ss_pred EEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCCC
Q 016429 93 LIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (390)
Q Consensus 93 ~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~~ 137 (390)
=-|+.||.+...-- ..+.+.-.+.-..+.+..+-.+.|||+..
T Consensus 75 nYiFmGDfVDRGyy--SLEtfT~l~~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 75 NYIFMGDFVDRGYY--SLETFTLLLLLKARYPAKITLLRGNHESR 117 (306)
T ss_pred ceEEeccccccccc--cHHHHHHHHHHhhcCCceeEEeeccchhh
Confidence 35778995543321 12223222221112344588899999974
No 203
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.97 E-value=1.9e+02 Score=23.20 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCEEEEcC---CcCCCCChhhHHHHHHHHHhHhHhC--CCCEEEE
Q 016429 79 TAFINRMISAEKPDLIVFTG---DNIFGFDATDAAKSLNAAFAPAIAS--NIPWVAV 130 (390)
Q Consensus 79 ~~~l~~~i~~~~pD~Vv~~G---D~i~~~~~~~~~~~~~~~l~~~~~~--~ip~~~v 130 (390)
.+.+.+.+...+||+|++.. |...+.......+.+.++++.+.+. +++++++
T Consensus 29 ~~~~~~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~ 85 (157)
T cd01833 29 AAAAADWVLAAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVA 85 (157)
T ss_pred HHHhhhccccCCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34444555668999988864 7444333344555666666665443 4555544
No 204
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=26.56 E-value=2.1e+02 Score=25.71 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
..+...|+..+.-+||+++| ++ +.....+...+. ...++|++++.+-.+.
T Consensus 138 n~VtkaIekkKAkLVIIA~D-Vs----Pie~vk~LpaLC--rk~~VPY~iVktKaeL 187 (263)
T PTZ00222 138 QEVTRAIEKKQARMVVIANN-VD----PVELVLWMPNLC--RANKIPYAIVKDMARL 187 (263)
T ss_pred HHHHHHHHcCCceEEEEeCC-CC----HHHHHHHHHHHH--HhcCCCEEEECCHHHH
Confidence 44667777788999999999 54 222222222222 2479999999876544
No 205
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=25.91 E-value=1.3e+02 Score=27.64 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=13.1
Q ss_pred cCCCEEEEcCCcCCCCC
Q 016429 89 EKPDLIVFTGDNIFGFD 105 (390)
Q Consensus 89 ~~pD~Vv~~GD~i~~~~ 105 (390)
.++|+|+++||--.+..
T Consensus 15 d~lDvilVtGDAYVDHP 31 (302)
T PF08497_consen 15 DELDVILVTGDAYVDHP 31 (302)
T ss_pred ccccEEEEeCcccccCc
Confidence 68999999999444443
No 206
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=25.40 E-value=2.2e+02 Score=26.60 Aligned_cols=45 Identities=31% Similarity=0.435 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCC
Q 016429 79 TAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGN 133 (390)
Q Consensus 79 ~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GN 133 (390)
...+.+.+.+.+||+|+..|| .+ . .+...+.. ...++|++.+.|+
T Consensus 77 ~~~l~~~l~~~~pDvV~~~g~-~~-----~---~~~~~~aa-~~~~iPvv~~~~g 121 (363)
T cd03786 77 LIGLEAVLLEEKPDLVLVLGD-TN-----E---TLAAALAA-FKLGIPVAHVEAG 121 (363)
T ss_pred HHHHHHHHHHhCCCEEEEeCC-ch-----H---HHHHHHHH-HHcCCCEEEEecc
Confidence 345556667789999999999 21 1 12111111 1258999988765
No 207
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=25.26 E-value=1.8e+02 Score=26.17 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLG 132 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~G 132 (390)
+.+.+.+++.+--.++.+||-.. +......++.+.+.++++-++||
T Consensus 71 ~~i~~~~~~g~~Vv~L~sGDP~~-------yg~~~~l~~~l~~~~i~veiiPG 116 (257)
T PRK15473 71 DLMEAGVKAGKTVVRLQTGDVSL-------YGSIREQGEELTKRGIDFQVVPG 116 (257)
T ss_pred HHHHHHHHCCCeEEEEeCcCchh-------hhhHHHHHHHHHHCCCCEEEeCC
Confidence 44444443334345666899222 22222233333346789999999
No 208
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=25.01 E-value=2.3e+02 Score=25.63 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCC
Q 016429 78 TTAFINRMISAEKPDLIVFTGDNIF 102 (390)
Q Consensus 78 ~~~~l~~~i~~~~pD~Vv~~GD~i~ 102 (390)
+...+.+.++.+++| +|++|+.-.
T Consensus 99 ta~~Laa~~~~~~~~-LVl~G~qa~ 122 (260)
T COG2086 99 TAKALAAAVKKIGPD-LVLTGKQAI 122 (260)
T ss_pred HHHHHHHHHHhcCCC-EEEEecccc
Confidence 334555555556666 555666443
No 209
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=24.87 E-value=1.2e+02 Score=28.64 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=27.0
Q ss_pred hcCCCEEEEc---CCcCCCCChhhHHHHHHHHHhHhHhCCCCEE-EEeCC
Q 016429 88 AEKPDLIVFT---GDNIFGFDATDAAKSLNAAFAPAIASNIPWV-AVLGN 133 (390)
Q Consensus 88 ~~~pD~Vv~~---GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~-~v~GN 133 (390)
+.+||.|+++ || +...+.....++.++...+|++ +|+|+
T Consensus 218 ~~~pDGiflSNGPGD-------P~~~~~~i~~ik~l~~~~iPifGICLGH 260 (368)
T COG0505 218 ALNPDGIFLSNGPGD-------PAPLDYAIETIKELLGTKIPIFGICLGH 260 (368)
T ss_pred hhCCCEEEEeCCCCC-------hhHHHHHHHHHHHHhccCCCeEEEcHHH
Confidence 4789988876 44 4445555566777777788977 56775
No 210
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=24.32 E-value=64 Score=15.54 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=10.5
Q ss_pred ccCCCCeEEEEEecc
Q 016429 38 FRQNGEFKILQVADM 52 (390)
Q Consensus 38 ~~~~~~~ki~~iSDl 52 (390)
++.+=.++++++.|+
T Consensus 3 ~SPdytL~~v~Lpdt 17 (17)
T PF07981_consen 3 FSPDYTLRLVQLPDT 17 (17)
T ss_pred cCCCceEEEEecCCC
Confidence 345667888888874
No 211
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.03 E-value=1.3e+02 Score=29.89 Aligned_cols=43 Identities=33% Similarity=0.611 Sum_probs=25.8
Q ss_pred ChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHH
Q 016429 75 DLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAF 117 (390)
Q Consensus 75 ~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l 117 (390)
+......+...++..+||+|++.|--+.+....+....+.+.+
T Consensus 481 ~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al 523 (587)
T KOG0781|consen 481 NAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRAL 523 (587)
T ss_pred ChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHH
Confidence 3445566666666677777777777666655444444444433
No 212
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=23.38 E-value=3.9e+02 Score=21.72 Aligned_cols=51 Identities=10% Similarity=-0.011 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCCEEEEcC---CcCCCCChhhHHHHHHHHHhHhHh--CCCCEEE
Q 016429 79 TAFINRMISAEKPDLIVFTG---DNIFGFDATDAAKSLNAAFAPAIA--SNIPWVA 129 (390)
Q Consensus 79 ~~~l~~~i~~~~pD~Vv~~G---D~i~~~~~~~~~~~~~~~l~~~~~--~~ip~~~ 129 (390)
++.+...+...+||+|++.. |+..+....+..+.+.+.+..+.+ .++++++
T Consensus 40 ~~~~~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~~~p~~~vi~ 95 (174)
T cd01841 40 LEHIEPQLIQKNPSKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREEFPNTKIYL 95 (174)
T ss_pred HHHHHHHHHhcCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 34444444557888877663 633332233444455555555443 2445443
No 213
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=23.26 E-value=2.4e+02 Score=20.58 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEe
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVL 131 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~ 131 (390)
....+.+...+.-+||++.| +... ........+. ...++|++.++
T Consensus 21 ~~v~k~l~~~~~~lvilA~d-~~~~----~~~~~l~~~c--~~~~Ip~~~~~ 65 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAED-CSPD----SIKKHLPALC--EEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHTTCESEEEEETT-SSSG----HHHHHHHHHH--HHTTEEEEEES
T ss_pred HHHHHHHHcCCCcEEEEcCC-CChh----hhcccchhhe--eccceeEEEEC
Confidence 34556667778999999999 5432 2222112222 25789998887
No 214
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=23.24 E-value=1.3e+02 Score=24.52 Aligned_cols=47 Identities=4% Similarity=0.007 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEe
Q 016429 78 TTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVL 131 (390)
Q Consensus 78 ~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~ 131 (390)
..+.+.+.+.+.++|-|+++=+. ...+.+.+.++.+.+.++.+.++|
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~-------~~~~~i~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPW-------SEEEQIKRIIEELENHGVRVRVVP 175 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TT-------S-HHHHHHHHHHHHTTT-EEEE--
T ss_pred CHHHHHHHHHhCCCCEEEEEcCc-------cCHHHHHHHHHHHHhCCCEEEEeC
Confidence 34668888888999999999662 123456667777777899999887
No 215
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=23.17 E-value=90 Score=27.52 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcCC
Q 016429 78 TTAFINRMISAEKPDLIVFTGD 99 (390)
Q Consensus 78 ~~~~l~~~i~~~~pD~Vv~~GD 99 (390)
..+.+.+++++.+||+||+.|=
T Consensus 49 ~~~~l~~~i~~~~Pd~Vi~~G~ 70 (222)
T PRK13195 49 SIAAAQQAIAEIEPALVIMLGE 70 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEeCc
Confidence 4467888888899999999996
No 216
>PTZ00486 apyrase Superfamily; Provisional
Probab=22.42 E-value=1.2e+02 Score=28.65 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=12.7
Q ss_pred CeEEEEEecccccCC
Q 016429 43 EFKILQVADMHFANG 57 (390)
Q Consensus 43 ~~ki~~iSDlH~~~~ 57 (390)
.++|+.|||+.-...
T Consensus 55 ~~~iaiIaDlD~~S~ 69 (352)
T PTZ00486 55 LFRVALVADLDKASK 69 (352)
T ss_pred eeeEEEEecCchhcc
Confidence 589999999997654
No 217
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=22.37 E-value=71 Score=28.37 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=5.6
Q ss_pred CCCCeEEEEe
Q 016429 241 APAPGLVYFH 250 (390)
Q Consensus 241 ~~~~~iv~~H 250 (390)
.+.|+++-.+
T Consensus 190 ~g~pv~~~~~ 199 (234)
T PRK10523 190 GGKPVLLEVE 199 (234)
T ss_pred CCCeEEEEEE
Confidence 5566655554
No 218
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=21.90 E-value=2.6e+02 Score=23.92 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=25.4
Q ss_pred CCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCC
Q 016429 90 KPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGN 133 (390)
Q Consensus 90 ~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GN 133 (390)
..|+++++|| .-.-.....++....++.-+.+.++..+++.|=
T Consensus 14 ~~~illl~g~-e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG 56 (188)
T TIGR00162 14 GTDLIILVGN-TQSLSPEGQYELVNAIIDVAKKYGARMIYTLGG 56 (188)
T ss_pred CCCEEEEEcC-CCCCChhhHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4699999999 422222223444444455455578877766654
No 219
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.88 E-value=3.8e+02 Score=23.92 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEe
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVL 131 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~ 131 (390)
+.....+++-+|||+|+.+=.-..-+ +. ...+.+. +.++|.+++-
T Consensus 50 ~~~~~~~~~~~pDf~i~isPN~a~PG-P~---~ARE~l~---~~~iP~IvI~ 94 (277)
T PRK00994 50 EVVKKMLEEWKPDFVIVISPNPAAPG-PK---KAREILK---AAGIPCIVIG 94 (277)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCC-ch---HHHHHHH---hcCCCEEEEc
Confidence 34445556789999999887333222 22 2333433 3689988873
No 220
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=21.66 E-value=3.3e+02 Score=24.16 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
+...+.+.+...|++++.|= . .+. ..+...+.+... .++|++.-|||.+.
T Consensus 22 ~~~~~~~~~~gtDai~VGGS-~-~~~---~~d~vv~~ik~~--~~lPvilfPg~~~~ 71 (230)
T PF01884_consen 22 EEALEAACESGTDAIIVGGS-D-TGV---TLDNVVALIKRV--TDLPVILFPGSPSQ 71 (230)
T ss_dssp HHHHHHHHCTT-SEEEEE-S-T-HCH---HHHHHHHHHHHH--SSS-EEEETSTCCG
T ss_pred HHHHHHHHhcCCCEEEECCC-C-Ccc---chHHHHHHHHhc--CCCCEEEeCCChhh
Confidence 33444556678999999997 3 111 122233334433 68999999999975
No 221
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=21.47 E-value=95 Score=25.75 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcC
Q 016429 78 TTAFINRMISAEKPDLIVFTG 98 (390)
Q Consensus 78 ~~~~l~~~i~~~~pD~Vv~~G 98 (390)
..+.|.+.|++.+||+||.|=
T Consensus 77 ~~~~l~~~l~~~~PD~IIsTh 97 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLIISTH 97 (169)
T ss_pred HHHHHHHHHhhcCCCEEEECC
Confidence 346678888899999999763
No 222
>PHA03008 hypothetical protein; Provisional
Probab=21.42 E-value=1.2e+02 Score=26.06 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=26.8
Q ss_pred CeEEEEecChhhhhhccCCCcccccCCCCCCCCCChHHHHHHHHcCCeeEEEeccCCC
Q 016429 244 PGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHV 301 (390)
Q Consensus 244 ~~iv~~H~P~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~ 301 (390)
.-|+++|-|+....+ +.++| ..+++.+. +-+.++.++||.-+
T Consensus 162 tDILITHgPP~GhLD-----------~~vGC----~~Ll~~I~-rVKPKyHVFGh~~~ 203 (234)
T PHA03008 162 CDILITASPPFAILD-----------DDLAC----GDLFSKVI-KIKPKFHIFNGLTQ 203 (234)
T ss_pred CCEEEeCCCCccccc-----------cccCc----HHHHHHHH-HhCCcEEEeCCccc
Confidence 779999999966422 12233 24455554 33579999999544
No 223
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=21.38 E-value=1.6e+02 Score=26.92 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=17.0
Q ss_pred ChhHHHHHHHHHHhcCCCEEEEcCC
Q 016429 75 DLNTTAFINRMISAEKPDLIVFTGD 99 (390)
Q Consensus 75 ~~~~~~~l~~~i~~~~pD~Vv~~GD 99 (390)
+...+..+.+.+...+||+|+.+|+
T Consensus 44 d~~~~~~~~~~l~~~~~DlIi~~gt 68 (294)
T PF04392_consen 44 DPEKLRQIARKLKAQKPDLIIAIGT 68 (294)
T ss_dssp -HHHHHHHHHHHCCTS-SEEEEESH
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 3444555566666789999999998
No 224
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=21.30 E-value=1e+02 Score=27.78 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=24.6
Q ss_pred cCCCE-EEEcCCcCCCCChhhHHHHHHHHHhHhHhCCCCEEEEeCCCCC
Q 016429 89 EKPDL-IVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (390)
Q Consensus 89 ~~pD~-Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ip~~~v~GNHD~ 136 (390)
..||- .++.||.|..... ..+...-.+.--++..-.+-+++|||+.
T Consensus 84 ~~pdtnylfmGDyvdrGy~--SvetVS~lva~Kvry~~rvtilrGNHEs 130 (319)
T KOG0371|consen 84 LAPDTNYLFMGDYVDRGYY--SVETVSLLVALKVRYPDRVTILRGNHES 130 (319)
T ss_pred CCCCcceeeeeeecccccc--hHHHHHHHHHhhccccceeEEecCchHH
Confidence 45653 6778996654422 2222222222111233468899999997
No 225
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=21.23 E-value=4.6e+02 Score=23.69 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=40.3
Q ss_pred EEEEEecccccCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcCCCCChhhHHHHHHHHHhHhHhCC
Q 016429 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASN 124 (390)
Q Consensus 45 ki~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~Vv~~GD~i~~~~~~~~~~~~~~~l~~~~~~~ 124 (390)
.+.+++|+|....... .+....+.+.+.+....+|.|++||- -++... .++.+.++-+. ...
T Consensus 139 ~v~i~adV~~kh~~~l-------------~~~~~~e~a~~~~~~~~aDavivtG~-~TG~~~--d~~~l~~vr~~--~~~ 200 (257)
T TIGR00259 139 EVKILADIVVKHAVHL-------------GNRDLESIALDTVERGLADAVILSGK-TTGTEV--DLELLKLAKET--VKD 200 (257)
T ss_pred CcEEEeceeecccCcC-------------CCCCHHHHHHHHHHhcCCCEEEECcC-CCCCCC--CHHHHHHHHhc--cCC
Confidence 5778888887755421 12233344555555567999999998 666532 22333322221 135
Q ss_pred CCEEEEeC
Q 016429 125 IPWVAVLG 132 (390)
Q Consensus 125 ip~~~v~G 132 (390)
+|+++--|
T Consensus 201 ~PvllggG 208 (257)
T TIGR00259 201 TPVLAGSG 208 (257)
T ss_pred CeEEEECC
Confidence 78876655
No 226
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=21.21 E-value=1.1e+02 Score=26.20 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.7
Q ss_pred ChhHHHHHHHHHHhcCCCEEEEcCC
Q 016429 75 DLNTTAFINRMISAEKPDLIVFTGD 99 (390)
Q Consensus 75 ~~~~~~~l~~~i~~~~pD~Vv~~GD 99 (390)
-.+..+.+.+.|++.+||+|+..|=
T Consensus 45 f~~s~~~l~~~i~~~qPd~vl~iG~ 69 (207)
T COG2039 45 FKKSIDALVQAIAEVQPDLVLAIGQ 69 (207)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEecc
Confidence 4556788999999999999999997
No 227
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.14 E-value=4e+02 Score=20.63 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCCEEEEcCC
Q 016429 80 AFINRMISAEKPDLIVFTGD 99 (390)
Q Consensus 80 ~~l~~~i~~~~pD~Vv~~GD 99 (390)
+.+.+.+.+.+||+|++++-
T Consensus 40 e~~~~~a~~~~~d~V~iS~~ 59 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSSL 59 (122)
T ss_pred HHHHHHHHHcCCCEEEEccc
Confidence 55777778899999999987
No 228
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=20.91 E-value=1.2e+02 Score=26.59 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=15.8
Q ss_pred hcccccccCCc--ceeccCCCCeEEEEEe
Q 016429 24 PTLAVNAKQER--KLRFRQNGEFKILQVA 50 (390)
Q Consensus 24 ~~~~~~~~~~~--~~~~~~~~~~ki~~iS 50 (390)
+++|+.+++++ -..|.+..+-.|+++-
T Consensus 14 LsgCa~~~~~~~dy~a~~~~kPrSILVlP 42 (215)
T PF05643_consen 14 LSGCATTKPPPYDYTAFKESKPRSILVLP 42 (215)
T ss_pred HhhccCCCCccccHHHHhcCCCceEEEeC
Confidence 44455443322 3356667778899886
No 229
>PF15240 Pro-rich: Proline-rich
Probab=20.73 E-value=62 Score=27.29 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=5.3
Q ss_pred HHHHHHHhhc
Q 016429 16 VLTLLCIAPT 25 (390)
Q Consensus 16 ~~~~~~~~~~ 25 (390)
+|+|+||+++
T Consensus 5 LLSvALLALS 14 (179)
T PF15240_consen 5 LLSVALLALS 14 (179)
T ss_pred HHHHHHHHhh
Confidence 3455555555
No 230
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=20.35 E-value=94 Score=27.45 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=9.7
Q ss_pred CCCCeEEEEEeccc
Q 016429 40 QNGEFKILQVADMH 53 (390)
Q Consensus 40 ~~~~~ki~~iSDlH 53 (390)
..+.++|.+.++.+
T Consensus 30 ~~~~l~vg~~~~~~ 43 (254)
T TIGR01098 30 VPKELNFGILPGEN 43 (254)
T ss_pred CCCceEEEECCCCC
Confidence 34678888887654
Done!