BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016430
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RJQ|A Chain A, Crystal Structure Of Anti-Hiv Llama Vhh Antibody A12 In
Complex With C186 Gp120
Length = 382
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 278 WSNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWD 323
W N M ++ E ++WDE PC+ LT G SA+ + P+ S+D
Sbjct: 77 WKND--MVEQMHEDIISLWDESLKPCVKLT-GGSAITQACPKVSFD 119
>pdb|4DKO|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Ts-Ii-224
pdb|4DKO|C Chain C, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Ts-Ii-224
pdb|4DKP|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-50
pdb|4DKP|C Chain C, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-50
pdb|4DKQ|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Dmj-I-228
pdb|4DKR|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-169
pdb|4DKR|C Chain C, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-169
pdb|4DVS|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Nbd-557
pdb|4DVS|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Nbd-557
pdb|4DVT|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-ii-37
pdb|4DVT|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-ii-37
pdb|4DVV|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-i-261
pdb|4DVV|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-i-261
pdb|4DVW|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-167
pdb|4DVW|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-167
pdb|4DVX|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-188
pdb|4DVX|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-188
Length = 353
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 278 WSNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWD----RTCTAAAAIG 333
W N+ M +++E ++WD+ PC+ LT G S + + P+ S+D CT A +
Sbjct: 53 WKNN--MVEQMQEDVISLWDQSLQPCVKLT-GGSVIKQACPKISFDPIPIHYCTPAGYVI 109
Query: 334 L 334
L
Sbjct: 110 L 110
>pdb|3NGB|G Chain G, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|A Chain A, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|D Chain D, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|I Chain I, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3SE8|G Chain G, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc03 In Complex With Hiv-1 Gp120
pdb|3SE9|G Chain G, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc- Pg04 In Complex With Hiv-1 Gp120
pdb|3TGT|A Chain A, Crystal Structure Of Unliganded Hiv-1 Clade AE STRAIN
93TH057 GP120 Core
Length = 353
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 278 WSNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWD----RTCTAAAAIG 333
W N+ M +++E ++WD+ PC+ LT G S + + P+ S+D CT A +
Sbjct: 53 WKNN--MVEQMQEDVISLWDQSLQPCVKLT-GGSVIKQACPKISFDPIPIHYCTPAGYVI 109
Query: 334 L 334
L
Sbjct: 110 L 110
>pdb|3TGR|A Chain A, Crystal Structure Of Unliganded Hiv-1 Clade C Strain C1086
Gp120 Core
pdb|3TGR|B Chain B, Crystal Structure Of Unliganded Hiv-1 Clade C Strain C1086
Gp120 Core
pdb|3TGS|A Chain A, Crystal Structure Of Hiv-1 Clade C Strain C1086 Gp120 Core
In Complex With Nbd-556
pdb|3TGS|B Chain B, Crystal Structure Of Hiv-1 Clade C Strain C1086 Gp120 Core
In Complex With Nbd-556
Length = 358
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 278 WSNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWD 323
W N M ++ E ++WDE PC+ LT G SA+ + P+ S+D
Sbjct: 53 WKND--MVEQMHEDIISLWDESLKPCVKLT-GGSAITQACPKVSFD 95
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 206 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 259
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 221 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 274
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 216 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 269
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 216 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 269
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 228 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 281
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 216 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 269
>pdb|3U7Y|G Chain G, Structure Of Nih45-46 Fab In Complex With Gp120 Of 93th057
Hiv
Length = 361
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 278 WSNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWD----RTCTAAAAIG 333
W N+ M +++E ++WD+ PC+ LT G S + + P+ S+D CT A +
Sbjct: 53 WKNN--MVEQMQEDVISLWDQCLQPCVKLT-GGSVIKQACPKISFDPIPIHYCTPAGYVI 109
Query: 334 L 334
L
Sbjct: 110 L 110
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 206 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 259
>pdb|3TIH|A Chain A, Crystal Structure Of Unliganded Hiv-1 Clade C Strain
Zm109f.Pb4 Gp120 Core
pdb|3TIH|B Chain B, Crystal Structure Of Unliganded Hiv-1 Clade C Strain
Zm109f.Pb4 Gp120 Core
pdb|3TIH|C Chain C, Crystal Structure Of Unliganded Hiv-1 Clade C Strain
Zm109f.Pb4 Gp120 Core
pdb|3TIH|D Chain D, Crystal Structure Of Unliganded Hiv-1 Clade C Strain
Zm109f.Pb4 Gp120 Core
Length = 345
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 278 WSNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWD 323
W N M +++ E ++WD+ PC+ LT G S + + P+ S+D
Sbjct: 53 WKND--MVDQMHEDIISLWDQSLKPCVKLT-GGSTITQACPKVSFD 95
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 323 DRTCTAAAAIGLLSELQLLPKFSSCGLDEAVEAIEDALAVLLEALTTRRL 372
DR +G SE+ +LP+ + L ++V + E A A++L+ LT + L
Sbjct: 83 DRVAYGTGPLGAYSEVHVLPEANLVKLADSV-SFEQAAALMLKGLTVQYL 131
>pdb|2OFJ|A Chain A, Crystal Structure Of The E190a Mutant Of
O-succinylbenzoate Synthase From Escherichia Coli
pdb|2OFJ|B Chain B, Crystal Structure Of The E190a Mutant Of
O-succinylbenzoate Synthase From Escherichia Coli
pdb|2OFJ|C Chain C, Crystal Structure Of The E190a Mutant Of
O-succinylbenzoate Synthase From Escherichia Coli
pdb|2OFJ|D Chain D, Crystal Structure Of The E190a Mutant Of
O-succinylbenzoate Synthase From Escherichia Coli
Length = 323
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 47 RETHIGDTDDGFITLQEWQ--GWGAVSPLPALVQQIVEDLKAL 87
R+ + D ++ L+E + GWG +SPLP Q+ E+ +++
Sbjct: 23 RDRRLKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQSV 65
>pdb|1FHV|A Chain A, Crystal Structure Analysis Of O-Succinylbenzoate
Synthase From E. Coli Complexed With Mg And Osb
Length = 323
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 47 RETHIGDTDDGFITLQEWQ--GWGAVSPLPALVQQIVEDLKAL 87
R+ + D ++ L+E + GWG +SPLP Q+ E+ +++
Sbjct: 23 RDRRLKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQSV 65
>pdb|4FMG|A Chain A, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|B Chain B, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|C Chain C, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|D Chain D, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|E Chain E, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|F Chain F, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|G Chain G, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|H Chain H, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|I Chain I, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|J Chain J, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|K Chain K, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|L Chain L, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|M Chain M, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|N Chain N, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|O Chain O, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|P Chain P, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|Q Chain Q, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|R Chain R, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|S Chain S, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMG|T Chain T, Merkel Cell Polyomavirus Vp1 Unassembled Pentamer
pdb|4FMH|A Chain A, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|B Chain B, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|C Chain C, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|D Chain D, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|E Chain E, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|F Chain F, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|G Chain G, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|H Chain H, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|I Chain I, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|J Chain J, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|K Chain K, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|L Chain L, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|M Chain M, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|N Chain N, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|O Chain O, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|P Chain P, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|Q Chain Q, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|R Chain R, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|S Chain S, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMH|T Chain T, Merkel Cell Polyomavirus Vp1 In Complex With
Disialyllactose
pdb|4FMI|A Chain A, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|B Chain B, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|C Chain C, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|D Chain D, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|E Chain E, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|F Chain F, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|G Chain G, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|H Chain H, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|I Chain I, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|J Chain J, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|K Chain K, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|L Chain L, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|M Chain M, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|N Chain N, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|O Chain O, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|P Chain P, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|Q Chain Q, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|R Chain R, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|S Chain S, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMI|T Chain T, Merkel Cell Polyomavirus Vp1 In Complex With
3'-Sialyllactosamine
pdb|4FMJ|A Chain A, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|B Chain B, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|C Chain C, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|D Chain D, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|E Chain E, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|F Chain F, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|G Chain G, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|H Chain H, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|I Chain I, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|J Chain J, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|K Chain K, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|L Chain L, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|M Chain M, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|N Chain N, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|O Chain O, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|P Chain P, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|Q Chain Q, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|R Chain R, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|S Chain S, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
pdb|4FMJ|T Chain T, Merkel Cell Polyomavirus Vp1 In Complex With Gd1a
Oligosaccharide
Length = 289
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 229 KVWCLYPNKNAIKMSVQDTLGYGSSEDLEYTPMMTDGDNTLNFVLID 275
+VWC P+KN +++ YGS + TP + NTL VL+D
Sbjct: 198 EVWCPDPSKN------ENSRYYGSIQTGSQTPTVLQFSNTLTTVLLD 238
>pdb|1R6W|A Chain A, Crystal Structure Of The K133r Mutant Of
O-Succinylbenzoate Synthase (Osbs) From Escherichia
Coli. Complex With Shchc
Length = 322
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 47 RETHIGDTDDGFITLQEWQ--GWGAVSPLPALVQQIVEDLKAL 87
R+ + D ++ L+E + GWG +SPLP Q+ E+ +++
Sbjct: 22 RDRRLKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQSV 64
>pdb|1FHU|A Chain A, Crystal Structure Analysis Of O-Succinylbenzoate
Synthase From E. Coli
Length = 320
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 47 RETHIGDTDDGFITLQEWQ--GWGAVSPLPALVQQIVEDLKAL 87
R+ + D ++ L+E + GWG +SPLP Q+ E+ +++
Sbjct: 20 RDRRLKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQSV 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,476,978
Number of Sequences: 62578
Number of extensions: 477682
Number of successful extensions: 938
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 49
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)