BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016430
         (389 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q47319|YFIP_ECOLI DTW domain-containing protein YfiP OS=Escherichia coli (strain K12)
           GN=yfiP PE=3 SV=2
          Length = 232

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 26/192 (13%)

Query: 144 GSQGYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLYMHPKDFLRQNNTGKLLWQVLGVQA 203
           G++   CQ+C +  + C+CS +         RF L M   + ++ +NTG+L+  +L    
Sbjct: 25  GNRVRRCQRCLLPEKLCLCSTITPAQ--AKSRFCLLMFDTEPMKPSNTGRLIADILPDTV 82

Query: 204 ATLCLYGVAEDEEIMWSAFKRAGKSKVWCLYPNKNAIKMSVQDTLGYGSSEDLEYTPMMT 263
           A              WS  +      +  L  N +   M V          ++ +TP   
Sbjct: 83  A------------FQWS--RTEPSQDLLELVQNPDYQPMVVFPASYADEQREVIFTP--P 126

Query: 264 DGDNTLNFVLIDGTWSNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWD 323
            G   L F+++DGTW  +  MF       K+ +  +++P IS+ +   + ++LR   +  
Sbjct: 127 AGKPPL-FIMLDGTWPEARKMFR------KSPY-LDNLPVISVDLSRLSAYRLREAQAEG 178

Query: 324 RTCTAAAAIGLL 335
           + CTA  AI LL
Sbjct: 179 QYCTAEVAIALL 190


>sp|B5XNX3|MENC_KLEP3 o-succinylbenzoate synthase OS=Klebsiella pneumoniae (strain 342)
          GN=menC PE=3 SV=1
          Length = 321

 Score = 32.3 bits (72), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 47 RETHIGDTDDGFITLQE--WQGWGAVSPLPALVQQIVED 83
          RE  +   D  FI LQE   +GWG +SPLP    + +E+
Sbjct: 20 RERRLKTRDGLFIRLQEDEREGWGEISPLPGFSNETLEE 58


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.133    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,769,924
Number of Sequences: 539616
Number of extensions: 6005880
Number of successful extensions: 12118
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12115
Number of HSP's gapped (non-prelim): 5
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)