Query 016430
Match_columns 389
No_of_seqs 252 out of 626
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3148 Uncharacterized conser 100.0 6.9E-64 1.5E-68 463.0 13.0 230 111-387 1-230 (231)
2 PF03942 DTW: DTW domain; Int 100.0 2.1E-47 4.6E-52 354.2 18.7 200 146-370 1-202 (203)
3 KOG4382 Uncharacterized conser 99.9 1.1E-21 2.4E-26 184.2 10.8 183 144-344 17-218 (276)
4 KOG3795 Uncharacterized conser 99.5 7.9E-15 1.7E-19 133.9 5.0 174 134-340 13-186 (230)
5 PRK02287 hypothetical protein; 97.9 2.1E-05 4.5E-10 72.5 6.1 73 268-361 62-134 (171)
6 PF04034 DUF367: Domain of unk 96.7 0.004 8.7E-08 55.0 6.3 70 270-360 23-92 (127)
7 COG2042 Uncharacterized conser 96.2 0.0088 1.9E-07 55.2 5.3 72 269-361 71-142 (179)
8 cd02812 PcrB_like PcrB_like pr 64.2 1.4E+02 0.0031 28.8 12.5 126 178-337 4-144 (219)
9 PF08965 DUF1870: Domain of un 50.7 14 0.00031 32.5 2.7 30 57-86 26-56 (118)
10 PF13202 EF-hand_5: EF hand; P 48.2 6.9 0.00015 24.8 0.3 13 54-66 11-23 (25)
11 PF09282 Mago-bind: Mago bindi 41.4 3.3 7.2E-05 27.4 -1.9 10 275-284 12-21 (27)
12 PRK00939 translation initiatio 38.6 20 0.00043 30.5 1.7 21 148-168 2-22 (99)
13 cd00636 TroA-like Helical back 26.4 3.4E+02 0.0073 21.7 9.8 75 267-371 61-135 (148)
14 PF06769 Plasmid_Txe: Plasmid 25.6 17 0.00036 29.8 -0.8 54 62-122 7-66 (80)
15 PF15171 Spexin: Neuropeptide 23.8 1.1E+02 0.0024 25.4 3.6 26 316-341 44-69 (90)
16 PF01497 Peripla_BP_2: Peripla 23.4 5.6E+02 0.012 23.2 9.0 72 268-371 60-133 (238)
17 COG4115 Uncharacterized protei 22.4 53 0.0011 27.3 1.5 44 79-123 22-71 (84)
No 1
>COG3148 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.9e-64 Score=463.04 Aligned_cols=230 Identities=23% Similarity=0.404 Sum_probs=211.4
Q ss_pred ccchhhHHHHhhhcccccchhhhHHhhhhhhhcCCCCcCCcccccCCCCcccCCCcCccccCCcEEEEEeCCCcCCCCCC
Q 016430 111 LEDKKHRATYQTLGESEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLYMHPKDFLRQNN 190 (389)
Q Consensus 111 ~~~~~~rl~~~rl~~s~r~~~~f~AR~~~~~l~Gsr~~rC~~C~lp~~~CiC~~ip~~~L~~~~r~~LLmHp~E~~rpsN 190 (389)
++|||++||++||+++||| |+|| |+++.+|++|.++.++|+|+.+|++ +++++|+|||||+|++||+|
T Consensus 1 ~~~a~~~l~~~rl~r~t~p---f~ar-------g~~~~rC~~C~l~~~~CLCa~ip~~--ea~~~~~Ll~hdtE~~kpsN 68 (231)
T COG3148 1 TENAVLQLRQERLARATRP---FLAR-------GNRVRRCQRCLLPEKHCLCATIPPL--EARSRFCLLMHDTEPMKPSN 68 (231)
T ss_pred CchHHHHHHHHHHHHhhch---hhhc-------CCcchhhhhhCChhhhccccCcCCc--ccceeEEEEecCccccCCCc
Confidence 5799999999999999999 9999 9999999999999999999999975 59999999999999999999
Q ss_pred hHHHHHHhcccCCeEEEEeccCCChHHHHHHHHhcCCCCeEEEccCCCccccccccccCCCCCCCccCCCCCCCCCCcee
Q 016430 191 TGKLLWQVLGVQAATLCLYGVAEDEEIMWSAFKRAGKSKVWCLYPNKNAIKMSVQDTLGYGSSEDLEYTPMMTDGDNTLN 270 (389)
Q Consensus 191 TGrLla~~L~~~~~~i~~~Gr~e~e~~l~~~L~~dp~~~~~LLFP~e~A~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 270 (389)
|||||+++++ |+..+.|+ |++.+++|++++. +|+|++|||||+++|.+..++.. ....+|+|+
T Consensus 69 Tgrliad~l~-dt~a~~ws-Rte~~~eLl~ll~-~P~~~p~lvfP~e~a~e~t~v~~--------------~~p~~k~pl 131 (231)
T COG3148 69 TGRLIADILA-DTRAFQWS-RTEPNPELLALLA-NPDYQPYLVFPAEYAEELTEVIS--------------TAPAEKPPL 131 (231)
T ss_pred chhHHHHhhh-hhhhhhcc-ccCCCHHHHHHHh-CCCCceEEEcchHHHHHHHHHhh--------------cccccCCce
Confidence 9999999997 89999996 8899999999888 99999999999999999887632 234458999
Q ss_pred EEEEcCChHHHHHHHHHhhhhccCccccCCCceEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcCCccccCCCc
Q 016430 271 FVLIDGTWSNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLLPKFSSCGLD 350 (389)
Q Consensus 271 ~IlLDGTW~QArKMfrrip~~akSp~L~~~LP~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~~~l~~~G~~ 350 (389)
||||||||++|||||| ||||| ++||+|||.++..|.|+|||++.+++|||+||++.+|.+ +|++
T Consensus 132 fIllDgTW~eArKMfr------ksPyL-a~lP~vsl~~~~lS~YRLRka~~e~~lcT~Eva~~lLd~---------~gd~ 195 (231)
T COG3148 132 FILLDGTWREARKMFR------KSPYL-ADLPVVSLDPERLSAYRLRKAQAEGQLCTAEVAAALLDM---------AGDE 195 (231)
T ss_pred EEEecCccHHHHHHHh------cCchh-ccCCccccCHHHhhHHHHhhCCCCCceeHHHHHHHHHHH---------hCCh
Confidence 9999999999999999 59999 999999999999999999999999999999999999999 4999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHccCCCcccccccccC
Q 016430 351 EAVEAIEDALAVLLEALTTRRLRMGRSVTRKARHNLN 387 (389)
Q Consensus 351 ~~a~~L~~~f~~fi~~~~a~r~r~~r~~~r~~r~~~~ 387 (389)
.++++|.++|++|++.|++.|.+. -..|+.+|..|
T Consensus 196 ~aae~L~~~f~~f~e~yla~k~~~--~~~~~~~~~e~ 230 (231)
T COG3148 196 RAAEALGKHFDAFKERYLAGKSEH--LGERTAAHQEN 230 (231)
T ss_pred hhhHHHHHHHHHHHHHHHhcCccc--ccccChhhhhc
Confidence 999999999999999999998877 44455555443
No 2
>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.
Probab=100.00 E-value=2.1e-47 Score=354.16 Aligned_cols=200 Identities=24% Similarity=0.430 Sum_probs=166.6
Q ss_pred CCcCCcccccCCCCcccCCCcCccccCCcEEEEEeCCCcCCCCCChHHHHHHhcccCCeEEEEeccCCChHHHHHHHHhc
Q 016430 146 QGYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLYMHPKDFLRQNNTGKLLWQVLGVQAATLCLYGVAEDEEIMWSAFKRA 225 (389)
Q Consensus 146 r~~rC~~C~lp~~~CiC~~ip~~~L~~~~r~~LLmHp~E~~rpsNTGrLla~~L~~~~~~i~~~Gr~e~e~~l~~~L~~d 225 (389)
|+.+|++|++|...|+|+.+|++ +++++|+|||||+|..|++|||+|+++++ +++.++++++.+++..+...+. +
T Consensus 1 rr~~C~~C~~~~~~C~C~~~~~v--~~~~~v~iL~Hp~E~~~~~nTg~l~~~~l--~~~~i~~~~~~~~~~~~~~~~~-~ 75 (203)
T PF03942_consen 1 RRFRCPRCWRPLSLCICSLIPPV--ELPTRVVILQHPKERKRASNTGRLLALCL--PDCEIIVWPRFEPDERLLELLS-D 75 (203)
T ss_pred CCCcCcCCCCccccCCCcCCCCC--CCCcEEEEEECchhhhcccChHHHHHHhh--cccEEEEeCCCCCCHHHHHHhh-C
Confidence 58899999999999999999865 59999999999999999999999999987 4777777666655555444444 7
Q ss_pred CCCCeEEEccCCCccccccccccCCCCCCCccCCCCCCCCCCceeEEEEcCChHHHHHHHHHhhhhccCccccCCCceEE
Q 016430 226 GKSKVWCLYPNKNAIKMSVQDTLGYGSSEDLEYTPMMTDGDNTLNFVLIDGTWSNSAAMFNRLKEKAKTVWDEEDIPCIS 305 (389)
Q Consensus 226 p~~~~~LLFP~e~A~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~IlLDGTW~QArKMfrrip~~akSp~L~~~LP~vs 305 (389)
+.+.++||||+++|.+++++... .... .........+++++||||||||+||||||++ |||| ++||+|+
T Consensus 76 ~~~~~~lLfP~~~a~~~~~~~~~---~~~~-~~~~~~~~~~~~~~lIviDgTW~qA~km~~~------~p~l-~~lp~v~ 144 (203)
T PF03942_consen 76 PPYRTVLLFPSEDAIDLEELFSA---ASGE-ALQSSEEDSGKPKTLIVIDGTWRQAKKMLRR------SPWL-QQLPRVS 144 (203)
T ss_pred CCCcEEEEeeCCcccchhHHhhh---hccc-cccccccccCCceEEEEECCchHHHHHHHhh------Cccc-cCCceee
Confidence 78899999999999998765211 0000 0001223467889999999999999999996 9999 9999999
Q ss_pred ecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcCCccccCCCc-h-HHHHHHHHHHHHHHHHHHH
Q 016430 306 LTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLLPKFSSCGLD-E-AVEAIEDALAVLLEALTTR 370 (389)
Q Consensus 306 L~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~~~l~~~G~~-~-~a~~L~~~f~~fi~~~~a~ 370 (389)
|.+...|+|++||+|.+++|||+||++++|+++ +.. + .++.|+++|+.|++.++..
T Consensus 145 l~~~~~s~y~lRk~~~~~~lsT~EAv~~~L~~l---------~~~~~~~~~~Ll~~f~~~~~~~~~~ 202 (203)
T PF03942_consen 145 LKPSPPSFYRLRKQPKEGCLSTLEAVAYALKEL---------EEAPDEVADNLLDAFDAMVRRQQLA 202 (203)
T ss_pred CCCCcccceeeEecCCCCCEeHHHHHHHHHHHh---------cchhHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998 334 3 4999999999999988754
No 3
>KOG4382 consensus Uncharacterized conserved protein, contains DTW domain [Function unknown]
Probab=99.86 E-value=1.1e-21 Score=184.21 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=133.3
Q ss_pred CCCCcCCcccccCCCCcccCCCcCccccCCcEEEEEeCCCcCCCCCChHHHHHHhcccCCeEEEEeccC-CChH---HHH
Q 016430 144 GSQGYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLYMHPKDFLRQNNTGKLLWQVLGVQAATLCLYGVA-EDEE---IMW 219 (389)
Q Consensus 144 Gsr~~rC~~C~lp~~~CiC~~ip~~~L~~~~r~~LLmHp~E~~rpsNTGrLla~~L~~~~~~i~~~Gr~-e~e~---~l~ 219 (389)
|.|+..|+.|-+|...|+|..+|...+.+.+.++|||||.|-+++.||.+|+...|. +..+.++.+. +... +-.
T Consensus 17 ~~rR~~C~~CdrP~~lClC~~lp~p~~~~~~~I~ILqHp~E~kh~LnTt~il~lgL~--n~v~~V~~~~~f~~hv~~ag~ 94 (276)
T KOG4382|consen 17 GTRRPTCPSCDRPSQLCLCKKLPSPCFDNQVSITILQHPLERKHALNTTRILRLGLK--NVVFDVHDEAEFLIHVIGAGC 94 (276)
T ss_pred CcCCCCCCccCCCceeEEecCCCCCCcCCcceEEEeeCchHhhhhcchhhHHHhccc--cceeecccchhhhheeccCCc
Confidence 889999999999999999999998777899999999999999999999999999984 5555553111 1100 001
Q ss_pred HHHHhcCCCCeEEEc--cCCCccccccccccCCCCCCCccCCCCCCCCCCceeEEEEcCChHHHHHHHHHhhhhccCccc
Q 016430 220 SAFKRAGKSKVWCLY--PNKNAIKMSVQDTLGYGSSEDLEYTPMMTDGDNTLNFVLIDGTWSNSAAMFNRLKEKAKTVWD 297 (389)
Q Consensus 220 ~~L~~dp~~~~~LLF--P~e~A~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~IlLDGTW~QArKMfrrip~~akSp~L 297 (389)
+.+. ...+.++++ |+++|.++...... +.++ + ......-+..+|+|||||++||.|+.- |+.+
T Consensus 95 s~i~--~~p~~~l~~~~ps~dsv~l~e~~~~-~~l~-~-----~~~~~~~p~~ll~id~Tw~~ak~l~~~------S~~~ 159 (276)
T KOG4382|consen 95 SKID--TNPLDSLYRVEPSDDSVKLGESGNV-ENLE-S-----EKNVVLVPHGLLEIDETWNLAKHLSEI------SYRD 159 (276)
T ss_pred cccC--CCcceeeeecCCCCCceeecccccc-cccc-c-----cccccCCCceeEEEccchHHHHHHHhh------cHHH
Confidence 1121 223456666 78888887654211 0000 0 001123357899999999999999984 6666
Q ss_pred cCCCc-------------eEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcCCcc
Q 016430 298 EEDIP-------------CISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLLPKF 344 (389)
Q Consensus 298 ~~~LP-------------~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~~~l 344 (389)
..+. .|+...-..|.|.||++|..+||||+|++|.+|..++..++|
T Consensus 160 -~R~r~~i~~~~d~~~~~~vk~g~I~~s~~~lr~ep~~gclst~e~~A~cla~~e~~~~~ 218 (276)
T KOG4382|consen 160 -SRVRDKISYEEDLIKICMVKHGVISNSSHSLRLEPNVGCLSTDEILASCLAMDELAKGF 218 (276)
T ss_pred -HhhhhhhhhhhhhhhhhhhcceeEeeceeEEEecCCCccchHHHHHHHHHHHHhhcchh
Confidence 5555 444445567889999999999999999999999998766665
No 4
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=7.9e-15 Score=133.87 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=133.7
Q ss_pred HHhhhhhhhcCCCCcCCcccccCCCCcccCCCcCccccCCcEEEEEeCCCcCCCCCChHHHHHHhcccCCeEEEEeccCC
Q 016430 134 TARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLYMHPKDFLRQNNTGKLLWQVLGVQAATLCLYGVAE 213 (389)
Q Consensus 134 ~AR~~~~~l~Gsr~~rC~~C~lp~~~CiC~~ip~~~L~~~~r~~LLmHp~E~~rpsNTGrLla~~L~~~~~~i~~~Gr~e 213 (389)
..|-.|..|-|||..+|+.|..|.. -.=..+|.+ +.+.+|.|+.||+|...+|...+ |.+|+++.+.|+.+ +.
T Consensus 13 eGRs~C~~C~~SRkFfCY~C~VPV~-vp~E~~P~v--kLPL~vDIIKHp~E~DGKSsAiH--AkiLAP~~VrI~Ty--P~ 85 (230)
T KOG3795|consen 13 EGRSTCPGCKSSRKFFCYDCRVPVP-VPGEFTPTV--KLPLAVDIIKHPMEKDGKSSALH--AKILAPDQVRIFTY--PN 85 (230)
T ss_pred cccccCCCCCCcceEEEEeeccccC-cchhccccc--ccceeeeeecCccccCCchhhhh--hhhcCcceeeeecc--CC
Confidence 4454444456799999999999988 455677765 48999999999999999998766 77887677777654 33
Q ss_pred ChHHHHHHHHhcCCCCeEEEccCCCccccccccccCCCCCCCccCCCCCCCCCCceeEEEEcCChHHHHHHHHHhhhhcc
Q 016430 214 DEEIMWSAFKRAGKSKVWCLYPNKNAIKMSVQDTLGYGSSEDLEYTPMMTDGDNTLNFVLIDGTWSNSAAMFNRLKEKAK 293 (389)
Q Consensus 214 ~e~~l~~~L~~dp~~~~~LLFP~e~A~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~IlLDGTW~QArKMfrrip~~ak 293 (389)
..+. +.-..+..-.+.+.||+..|...+... ...|.....|+||.||.|.+-|+.
T Consensus 86 IPdY--~~~~~~~~~~ta~~~p~~~a~~v~~~i----------------~~~gpi~r~v~~d~tw~q~~~~~~------- 140 (230)
T KOG3795|consen 86 IPDY--SQDSEDERQGTAIIFPSKSAISVEEFV----------------KTRGPIKRIVVLDCTWFQVGVMQK------- 140 (230)
T ss_pred Ccch--hhcCCceEEEEEEeechhhhhhHHHHh----------------ccCCCeeEEEEEeceehhhcceec-------
Confidence 3222 111111222489999999998865431 123556789999999999999998
Q ss_pred CccccCCCceEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhc
Q 016430 294 TVWDEEDIPCISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQL 340 (389)
Q Consensus 294 Sp~L~~~LP~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~ 340 (389)
.|.. ++|..|+|..-.+.+|+-.+...+..|.|+||+.+.|.+.+.
T Consensus 141 ~~~i-~gl~~v~lq~~~s~fwr~q~~~p~~~latieai~~~l~e~~~ 186 (230)
T KOG3795|consen 141 TPQI-QGLQHVSLQSYRTAFWRPQHNVPETGLATIEAIYYSLREYQE 186 (230)
T ss_pred Cccc-cceeeeehhhHHHHhcccccCCchhhHhHHHHHHHHHHHHHH
Confidence 6888 999999999988999998888888999999999999998743
No 5
>PRK02287 hypothetical protein; Provisional
Probab=97.90 E-value=2.1e-05 Score=72.50 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=54.7
Q ss_pred ceeEEEEcCChHHHHHHHHHhhhhccCccccCCCceEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcCCccccC
Q 016430 268 TLNFVLIDGTWSNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLLPKFSSC 347 (389)
Q Consensus 268 ~~~~IlLDGTW~QArKMfrrip~~akSp~L~~~LP~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~~~l~~~ 347 (389)
...+++||+||+++.+|+.+... . -- ..||-+- ...+.+|. ++..|||+||.|.+|-.+
T Consensus 62 ~~Gi~vlDcSW~~~~~~~~~~~~---~-~~-R~LP~Lv--AaNPvNYG-----kp~kLs~vEAlAaaLyI~--------- 120 (171)
T PRK02287 62 KRGIVALDCSWNEAERVFFKLLR---G-HH-RRLPFLV--AANPVNYG-----KPFKLSSVEALAAALYIL--------- 120 (171)
T ss_pred hCCEEEEECCHHHHhhhhhhccC---C-Cc-ccCcccc--ccCCCcCC-----CcccccHHHHHHHHHHHc---------
Confidence 34599999999999999986221 0 01 2355422 46677786 457999999999999996
Q ss_pred CCchHHHHHHHHHH
Q 016430 348 GLDEAVEAIEDALA 361 (389)
Q Consensus 348 G~~~~a~~L~~~f~ 361 (389)
|..++++.|+..|.
T Consensus 121 G~~~~A~~ll~~F~ 134 (171)
T PRK02287 121 GFKEEAEKILSKFK 134 (171)
T ss_pred CCHHHHHHHHhhCC
Confidence 99999999988773
No 6
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=96.71 E-value=0.004 Score=54.98 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=54.5
Q ss_pred eEEEEcCChHHHHHHHHHhhhhccCccccCCCceEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcCCccccCCC
Q 016430 270 NFVLIDGTWSNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLLPKFSSCGL 349 (389)
Q Consensus 270 ~~IlLDGTW~QArKMfrrip~~akSp~L~~~LP~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~~~l~~~G~ 349 (389)
-+.+||.+|+++..+|.+++ ++.. ..||-+- ...+-.|. ++..|||+||.|.+|-.+ |.
T Consensus 23 Gi~viDCSW~~l~~~f~k~~----~~~~-R~LP~Lv--AaNPVNYG-----kP~kLscvEAlAAaLyI~---------G~ 81 (127)
T PF04034_consen 23 GIAVIDCSWNRLDEVFKKLR----SRNH-RLLPYLV--AANPVNYG-----KPCKLSCVEALAAALYIL---------GF 81 (127)
T ss_pred CEEEEECcHHHHHHHHHhcC----CCCC-ccCchhh--ccCCcccC-----CcccccHHHHHHHHHHHc---------CC
Confidence 58999999999999988753 3443 4577633 34556674 357899999999999996 99
Q ss_pred chHHHHHHHHH
Q 016430 350 DEAVEAIEDAL 360 (389)
Q Consensus 350 ~~~a~~L~~~f 360 (389)
.++++.|+..|
T Consensus 82 ~~~A~~lL~~F 92 (127)
T PF04034_consen 82 KEQAEELLSKF 92 (127)
T ss_pred HHHHHHHHhcC
Confidence 99999998766
No 7
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.0088 Score=55.19 Aligned_cols=72 Identities=13% Similarity=0.257 Sum_probs=54.5
Q ss_pred eeEEEEcCChHHHHHHHHHhhhhccCccccCCCceEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcCCccccCC
Q 016430 269 LNFVLIDGTWSNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLLPKFSSCG 348 (389)
Q Consensus 269 ~~~IlLDGTW~QArKMfrrip~~akSp~L~~~LP~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~~~l~~~G 348 (389)
--+.+||++|.++.++|..|+. +.- ..||-+- ...+-.|. ....|||+||.|.+|-.+ |
T Consensus 71 ~Gi~vvdcSW~~~~~~f~~l~~----~~~-R~LP~Lv--AaNPVNYG-----kp~kLss~EAlaAaLYI~---------G 129 (179)
T COG2042 71 FGITVVDCSWNRVERVFKKLRG----REH-RRLPFLV--AANPVNYG-----KPFKLSSAEALAAALYIV---------G 129 (179)
T ss_pred cCeEEEEccHHHHHHHHHhcCc----ccc-ccccHhh--hcCCcccC-----CcchhchHHHHHHHHHHh---------C
Confidence 4589999999999999987653 222 4466543 24456664 357999999999999996 8
Q ss_pred CchHHHHHHHHHH
Q 016430 349 LDEAVEAIEDALA 361 (389)
Q Consensus 349 ~~~~a~~L~~~f~ 361 (389)
..+.|..|+..|.
T Consensus 130 ~~deA~~lls~F~ 142 (179)
T COG2042 130 FKDEASELLSKFK 142 (179)
T ss_pred cHHHHHHHHhhCc
Confidence 8888988887763
No 8
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=64.20 E-value=1.4e+02 Score=28.77 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=71.0
Q ss_pred EEeCCCcCCCCCChHHHHHHhcccCCeEEEEeccCCC---hHHHHHHHHhcCCCCeEEEccCCCccccccccccCCCCCC
Q 016430 178 LYMHPKDFLRQNNTGKLLWQVLGVQAATLCLYGVAED---EEIMWSAFKRAGKSKVWCLYPNKNAIKMSVQDTLGYGSSE 254 (389)
Q Consensus 178 LLmHp~E~~rpsNTGrLla~~L~~~~~~i~~~Gr~e~---e~~l~~~L~~dp~~~~~LLFP~e~A~~l~~~~~~~~~~~~ 254 (389)
.+..|... .+...|...+....+-.|.+.|-... .+...+.+....+.-|++|||+....-....
T Consensus 4 ~~iDP~K~---~~~~~~~~~~~~~gtdai~vGGS~~v~~~~~~~~~~ik~~~~~~Pvilfp~~~~~i~~~a--------- 71 (219)
T cd02812 4 TKLDPDKE---LVDEEIAKLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRIRRPVPVILFPSNPEAVSPGA--------- 71 (219)
T ss_pred eeeCCCCC---CCHHHHHHHHHhcCCCEEEECCccchhhhHHHHHHHHHHhcCCCCEEEeCCCccccCcCC---------
Confidence 44555555 34444444443124678888664422 2333444442222369999998865432111
Q ss_pred CccCCCCCCCCCCceeEEEE-----cCCh-----HHHHHHHHHhhhhccCccccCCCce--EEecCCCCccccccCCCCC
Q 016430 255 DLEYTPMMTDGDNTLNFVLI-----DGTW-----SNSAAMFNRLKEKAKTVWDEEDIPC--ISLTMGASAMHKLRPQPSW 322 (389)
Q Consensus 255 ~~~~~~~~~~~~k~~~~IlL-----DGTW-----~QArKMfrrip~~akSp~L~~~LP~--vsL~~~~~S~Y~LRkqp~~ 322 (389)
--.|+.- |-.| .+|-+.+++ .-.|+ .-+|. +-|+++....+.-...+
T Consensus 72 -------------Da~l~~svlns~n~~~i~g~~~~~~~~~~~-----~~~~~-e~i~~gYiv~~~~~~v~~v~~a~~-- 130 (219)
T cd02812 72 -------------DAYLFPSVLNSGDPYWIIGAQAEAAPEVGK-----IIPWL-ELIPEGYLVLNPDSTVARVTGAKT-- 130 (219)
T ss_pred -------------CEEEEEeeecCCCchHHHHHHHHHHHHhcc-----ccccc-cccceEEEEECCCCceeeeeccCc--
Confidence 1133333 6778 778888873 13788 88884 67888766666555444
Q ss_pred CCchHHHHHHHHHHH
Q 016430 323 DRTCTAAAAIGLLSE 337 (389)
Q Consensus 323 ~~LSTaEAaa~lL~~ 337 (389)
.+..=++++++|..
T Consensus 131 -~~~~e~~~ayA~aa 144 (219)
T cd02812 131 -DLKPEDAAAYALAA 144 (219)
T ss_pred -CCCHHHHHHHHHHH
Confidence 55555666666653
No 9
>PF08965 DUF1870: Domain of unknown function (DUF1870); InterPro: IPR015060 This family consist of hypothetical bacterial proteins. ; PDB: 1S4K_A.
Probab=50.70 E-value=14 Score=32.46 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=19.3
Q ss_pred Cccchhhhccc-CCCCCchHHHHHHHHHHHH
Q 016430 57 GFITLQEWQGW-GAVSPLPALVQQIVEDLKA 86 (389)
Q Consensus 57 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 86 (389)
++++.+.||.| --..|+|..|.+.+.+++.
T Consensus 26 ~~v~~~tWq~WE~G~~~IP~~Vie~l~~m~~ 56 (118)
T PF08965_consen 26 QDVSSRTWQQWEKGERPIPDDVIEELLEMKS 56 (118)
T ss_dssp SS--HHHHHHHHTTSS---HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 36799999999 3356899988888877754
No 10
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=48.24 E-value=6.9 Score=24.78 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=10.9
Q ss_pred CCCCccchhhhcc
Q 016430 54 TDDGFITLQEWQG 66 (389)
Q Consensus 54 ~~~~~~~~~~~~~ 66 (389)
.+||.||.+||+.
T Consensus 11 d~DG~is~~E~~~ 23 (25)
T PF13202_consen 11 DGDGKISFEEFQR 23 (25)
T ss_dssp TSSSEEEHHHHHH
T ss_pred CCCCcCCHHHHHH
Confidence 4569999999975
No 11
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=41.42 E-value=3.3 Score=27.38 Aligned_cols=10 Identities=40% Similarity=0.966 Sum_probs=5.0
Q ss_pred cCChHHHHHH
Q 016430 275 DGTWSNSAAM 284 (389)
Q Consensus 275 DGTW~QArKM 284 (389)
||||+++.++
T Consensus 12 DGt~RK~irv 21 (27)
T PF09282_consen 12 DGTWRKEIRV 21 (27)
T ss_dssp TS-EE--EE-
T ss_pred CCCcccceec
Confidence 9999977654
No 12
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=38.55 E-value=20 Score=30.48 Aligned_cols=21 Identities=29% Similarity=0.716 Sum_probs=18.8
Q ss_pred cCCcccccCCCCcccCCCcCc
Q 016430 148 YLCQKCWIAMEDCMCSKVKHC 168 (389)
Q Consensus 148 ~rC~~C~lp~~~CiC~~ip~~ 168 (389)
..|+.|..+...|.|..++..
T Consensus 2 ~~c~~c~~~~~~c~c~~~~~~ 22 (99)
T PRK00939 2 EICPVCGLPKELCVCEEVAKE 22 (99)
T ss_pred CcCccCCCCHHHccCcccCcc
Confidence 579999999999999998864
No 13
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=26.45 E-value=3.4e+02 Score=21.72 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=50.1
Q ss_pred CceeEEEEcCChHHHHHHHHHhhhhccCccccCCCceEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcCCcccc
Q 016430 267 NTLNFVLIDGTWSNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLLPKFSS 346 (389)
Q Consensus 267 k~~~~IlLDGTW~QArKMfrrip~~akSp~L~~~LP~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~~~l~~ 346 (389)
++.++|..++.+......+.+ .++|.+.+..... ..+.+....+..|..+
T Consensus 61 ~pDlvi~~~~~~~~~~~~l~~-----------~~i~~~~~~~~~~-----------~~~~~~~~~i~~lg~~-------- 110 (148)
T cd00636 61 KPDLIIANGSGLEAWLDKLSK-----------IAIPVVVVDEASE-----------LSLENIKESIRLIGKA-------- 110 (148)
T ss_pred CCCEEEEecccchhHHHHHHH-----------hCCCEEEECCCCc-----------CCHHHHHHHHHHHHHH--------
Confidence 455666666666543444443 3578888865422 4677777777778876
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHH
Q 016430 347 CGLDEAVEAIEDALAVLLEALTTRR 371 (389)
Q Consensus 347 ~G~~~~a~~L~~~f~~fi~~~~a~r 371 (389)
.|..+.++.+.+.++..++.+...-
T Consensus 111 ~~~~~~a~~~~~~~~~~~~~i~~~~ 135 (148)
T cd00636 111 LGKEENAEELIAELDARLAELRAKL 135 (148)
T ss_pred HCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888777766543
No 14
>PF06769 Plasmid_Txe: Plasmid encoded toxin Txe; InterPro: IPR009614 The Axe-Txe pair in Enterococcus faecium (Streptococcus faecium) and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This family describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by match to IPR006442 from INTERPRO [].; GO: 0004519 endonuclease activity, 0006401 RNA catabolic process; PDB: 3OEI_L 2A6R_F 2A6Q_E 2A6S_D.
Probab=25.60 E-value=17 Score=29.81 Aligned_cols=54 Identities=30% Similarity=0.596 Sum_probs=34.3
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHHHHHcCCCCcccCCCC------CccccccccccchhhHHHHhh
Q 016430 62 QEWQGWGAVSPLPALVQQIVEDLKALEKNFDAPMSFGGNG------GRLQGDFKILEDKKHRATYQT 122 (389)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~rl~~~r 122 (389)
++...|-.+. +.++.+|.+=|+++.+. +|-|.| |.++|-|..+.|..|||.|.=
T Consensus 7 ~d~~~~~~~d--~kl~kki~~li~~i~r~-----P~~G~gkpE~Lk~~~~g~~SRRI~~~hRLVY~v 66 (80)
T PF06769_consen 7 EDYKYWKKSD--KKLLKKINKLIKEIKRN-----PFTGIGKPEPLKGDLSGYWSRRINKKHRLVYEV 66 (80)
T ss_dssp HHHHHHHCC---HHHHHHHHHHHHHHHHS-----TTSSTT--EE-SGGGTTEEEEESSSSEEEEEEE
T ss_pred HHHHHHHHhC--HHHHHHHHHHHHHHHhc-----ccCCCCCCcccccCCCCeEEEEcCCCceEEEEE
Confidence 4445554443 35666665555555554 344543 567778999999999999864
No 15
>PF15171 Spexin: Neuropeptide secretory protein family, NPQ, spexin
Probab=23.76 E-value=1.1e+02 Score=25.38 Aligned_cols=26 Identities=31% Similarity=0.153 Sum_probs=21.6
Q ss_pred ccCCCCCCCchHHHHHHHHHHHhhcC
Q 016430 316 LRPQPSWDRTCTAAAAIGLLSELQLL 341 (389)
Q Consensus 316 LRkqp~~~~LSTaEAaa~lL~~L~~~ 341 (389)
=|++|+..-|+--|||+.+|..|+.-
T Consensus 44 E~Rs~n~~~L~l~eAAallLasLqk~ 69 (90)
T PF15171_consen 44 ERRSPNPQLLTLPEAAALLLASLQKP 69 (90)
T ss_pred cccCCCccccChHHHHHHHHHHHhcc
Confidence 36778889999999999999998443
No 16
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=23.35 E-value=5.6e+02 Score=23.15 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=44.9
Q ss_pred ceeEEEEcCCh--HHHHHHHHHhhhhccCccccCCCceEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcCCccc
Q 016430 268 TLNFVLIDGTW--SNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLLPKFS 345 (389)
Q Consensus 268 ~~~~IlLDGTW--~QArKMfrrip~~akSp~L~~~LP~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~~~l~ 345 (389)
+|-|||..+.+ .+.-..... ...|.+.++..... .+..-.+..|..+
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~-----------~~ip~~~~~~~~~~-------------~~~~~~i~~lg~~------- 108 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLE-----------AGIPVVVFDSSSPF-------------DDWKEQIRQLGKA------- 108 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHH-----------TTSEEEEESSTTCS-------------HHHHHHHHHHHHH-------
T ss_pred CCCEEEEeccccchHHHHHHhc-----------ccceEEEeecccch-------------HHHHHHHHHHHHh-------
Confidence 35677777777 222222222 68999999875433 3444444555554
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHH
Q 016430 346 SCGLDEAVEAIEDALAVLLEALTTRR 371 (389)
Q Consensus 346 ~~G~~~~a~~L~~~f~~fi~~~~a~r 371 (389)
.|.+++++.+.+.|+..++.+...-
T Consensus 109 -~g~~~~a~~~~~~~~~~~~~~~~~~ 133 (238)
T PF01497_consen 109 -LGKEDQAEALIAEYDARLDEIRKRL 133 (238)
T ss_dssp -HTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778888888888888877765543
No 17
>COG4115 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.36 E-value=53 Score=27.35 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCCCcccCCCC------CccccccccccchhhHHHHhhh
Q 016430 79 QIVEDLKALEKNFDAPMSFGGNG------GRLQGDFKILEDKKHRATYQTL 123 (389)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~rl~~~rl 123 (389)
.++.-.++|-+++.-- +|-|.| |++.|-|.=++|..||+.|.--
T Consensus 22 ~~~kki~~Li~~i~rd-Pfkg~gkpEpLk~~~~g~wSRRIn~eHRlVY~v~ 71 (84)
T COG4115 22 KLKKKINELIKEIKRD-PFKGIGKPEPLKGDYSGYWSRRINHEHRLVYTVD 71 (84)
T ss_pred HHHHHHHHHHHHhccC-ccccCCCCccCcccccchhhhhcccceeEEEEec
Confidence 3444555555555544 788876 4555666778999999988643
Done!