Query 016430
Match_columns 389
No_of_seqs 252 out of 626
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 13:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s4k_A Putative cytoplasmic pr 34.1 19 0.00066 30.6 2.2 28 58-86 29-58 (120)
2 2dof_A Transcription elongatio 25.8 29 0.00099 27.8 1.8 13 275-287 35-47 (85)
3 1rk8_C PYM protein, within the 22.9 4.6 0.00016 30.2 -3.2 10 275-284 20-29 (58)
4 4hn9_A Iron complex transport 17.2 6E+02 0.021 23.4 9.7 49 299-369 136-184 (335)
5 3utn_X Thiosulfate sulfurtrans 17.0 1.3E+02 0.0046 28.9 4.8 60 269-341 45-111 (327)
6 2q8p_A Iron-regulated surface 16.4 5.4E+02 0.018 22.4 9.4 50 299-370 81-130 (260)
7 2r7a_A Bacterial heme binding 14.2 6.1E+02 0.021 22.0 9.7 51 299-369 81-131 (256)
8 2w6a_A ARF GTPase-activating p 13.8 55 0.0019 24.6 0.8 13 53-65 4-16 (63)
9 2r79_A Periplasmic binding pro 13.0 7.1E+02 0.024 22.1 9.0 69 269-369 60-130 (283)
10 2bze_A KIAA0252 protein; human 12.1 1.5E+02 0.0051 25.5 3.3 37 50-86 107-150 (153)
No 1
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=34.09 E-value=19 Score=30.55 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=21.6
Q ss_pred ccchhhhccc--CCCCCchHHHHHHHHHHHH
Q 016430 58 FITLQEWQGW--GAVSPLPALVQQIVEDLKA 86 (389)
Q Consensus 58 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 86 (389)
+++.+.||.| |+ .++|..|.+.+..++.
T Consensus 29 ~vs~rtWQqWE~G~-~~IP~~i~e~~~~m~~ 58 (120)
T 1s4k_A 29 DNNSATWQRWEAGD-IPISPEIIARLKEMKA 58 (120)
T ss_dssp SCCHHHHHHHHHTS-SCCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCC-CCCCHHHHHHHHHHHH
Confidence 5899999999 65 5788888777775543
No 2
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=25.81 E-value=29 Score=27.80 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=12.3
Q ss_pred cCChHHHHHHHHH
Q 016430 275 DGTWSNSAAMFNR 287 (389)
Q Consensus 275 DGTW~QArKMfrr 287 (389)
|.||.+||+.+++
T Consensus 35 d~sW~Eakr~LrK 47 (85)
T 2dof_A 35 DVSWSDTRRTLRK 47 (85)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhcc
Confidence 8999999999996
No 3
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=22.95 E-value=4.6 Score=30.22 Aligned_cols=10 Identities=40% Similarity=1.003 Sum_probs=7.8
Q ss_pred cCChHHHHHH
Q 016430 275 DGTWSNSAAM 284 (389)
Q Consensus 275 DGTW~QArKM 284 (389)
||||+++.++
T Consensus 20 DGT~RK~irV 29 (58)
T 1rk8_C 20 DGTWRKARRV 29 (58)
T ss_dssp TSCEECCEEC
T ss_pred CCccccceec
Confidence 9999966554
No 4
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=17.24 E-value=6e+02 Score=23.40 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=35.0
Q ss_pred CCCceEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcCCccccCCCchHHHHHHHHHHHHHHHHHH
Q 016430 299 EDIPCISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLLPKFSSCGLDEAVEAIEDALAVLLEALTT 369 (389)
Q Consensus 299 ~~LP~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~~~l~~~G~~~~a~~L~~~f~~fi~~~~a 369 (389)
-++|.+.+++. .+-.+...+..|..+ .|.++.++.|.+.++.-++.+.+
T Consensus 136 ~gipvv~~~~~--------------~~~~~~~~i~~lg~~--------lg~e~~A~~li~~~~~~~~~i~~ 184 (335)
T 4hn9_A 136 LGIKAVVVNPE--------------DQSLLEECITLVGKI--------TNNAGRAEALNNSIKTFLADNKT 184 (335)
T ss_dssp TTCCEEEECCC--------------SHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCC--------------CHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHHHH
Confidence 46899988632 234555666667766 68888899999888888777654
No 5
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=16.95 E-value=1.3e+02 Score=28.87 Aligned_cols=60 Identities=22% Similarity=0.244 Sum_probs=35.6
Q ss_pred eeEEEEcCCh------HHHHHHHHHhhhhccCccccCCCc-eEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcC
Q 016430 269 LNFVLIDGTW------SNSAAMFNRLKEKAKTVWDEEDIP-CISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLL 341 (389)
Q Consensus 269 ~~~IlLDGTW------~QArKMfrrip~~akSp~L~~~LP-~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~ 341 (389)
..+|+||+|| +.+++=|.. ...+| .+.|+-+..+. ...+-.+-|-+.|.-+.+|+.+.+.
T Consensus 45 ~rvv~lDasw~lP~~~r~~~~E~~~----------~~HIPGAv~~Dld~~~d---~~~~~ph~LP~~~~f~~~l~~lGI~ 111 (327)
T 3utn_X 45 HRIVPVDATWYLPSWKLDNKVDFLT----------KPRIPNSIFFDIDAISD---KKSPYPHMFPTKKVFDDAMSNLGVQ 111 (327)
T ss_dssp SCEEEEECCCCCGGGCCCHHHHHHH----------SCBCTTCEECCTTTSSC---TTSSSTTCCCCHHHHHHHHHHTTCC
T ss_pred CcEEEEEecCCCCCCCCCHHHHHHh----------hCcCCCCeeeChHHhcC---CCCCCCCCCcCHHHHHHHHHHcCCC
Confidence 3589999999 456665532 03455 34444432211 2233345688889888888887443
No 6
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=16.36 E-value=5.4e+02 Score=22.44 Aligned_cols=50 Identities=10% Similarity=0.132 Sum_probs=35.6
Q ss_pred CCCceEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcCCccccCCCchHHHHHHHHHHHHHHHHHHH
Q 016430 299 EDIPCISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLLPKFSSCGLDEAVEAIEDALAVLLEALTTR 370 (389)
Q Consensus 299 ~~LP~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~~~l~~~G~~~~a~~L~~~f~~fi~~~~a~ 370 (389)
-++|.+.++. +.+.+.......|..+ .|.++.++.+.+.|+.-++...+.
T Consensus 81 ~gipvv~~~~--------------~~~~~~~~~i~~lg~~--------~g~~~~A~~~~~~~~~~~~~~~~~ 130 (260)
T 2q8p_A 81 LNMKGYFYDF--------------DSLKGMQKSITQLGDQ--------FNRKAQAKELNDHLNSVKQKIENK 130 (260)
T ss_dssp HTSCCEEECC--------------SSHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEecC--------------CCHHHHHHHHHHHHHH--------hCChHHHHHHHHHHHHHHHHHHHH
Confidence 3689888753 1345666667777776 688888999998888877766543
No 7
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=14.16 E-value=6.1e+02 Score=22.05 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=35.7
Q ss_pred CCCceEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcCCccccCCCchHHHHHHHHHHHHHHHHHH
Q 016430 299 EDIPCISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLLPKFSSCGLDEAVEAIEDALAVLLEALTT 369 (389)
Q Consensus 299 ~~LP~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~~~l~~~G~~~~a~~L~~~f~~fi~~~~a 369 (389)
-++|.+.++.. .+.+.+.......|..+ .|.++.++.+.+.|+.-++....
T Consensus 81 ~gipvv~~~~~------------~~~~~~~~~~i~~lg~~--------~g~~~~A~~~~~~~~~~~~~~~~ 131 (256)
T 2r7a_A 81 QKVNVVTLPRV------------PATLEQMYANIRQLAKT--------LQVPEQGDALVTQINQRLERVQQ 131 (256)
T ss_dssp TTCEEEEECCC------------SCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEecCC------------CCCHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHHHH
Confidence 47898887531 02455666666777776 68888899998888887776654
No 8
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=13.83 E-value=55 Score=24.58 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=9.0
Q ss_pred CCCCCccchhhhc
Q 016430 53 DTDDGFITLQEWQ 65 (389)
Q Consensus 53 ~~~~~~~~~~~~~ 65 (389)
|-.||.||+||+=
T Consensus 4 dlsDgpit~qeyl 16 (63)
T 2w6a_A 4 GSSDGAVTLQEYL 16 (63)
T ss_dssp C--CCSSCHHHHH
T ss_pred cccCCcchHHHHH
Confidence 7788889988874
No 9
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=12.96 E-value=7.1e+02 Score=22.15 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=43.0
Q ss_pred eeEEEEcCCh--HHHHHHHHHhhhhccCccccCCCceEEecCCCCccccccCCCCCCCchHHHHHHHHHHHhhcCCcccc
Q 016430 269 LNFVLIDGTW--SNSAAMFNRLKEKAKTVWDEEDIPCISLTMGASAMHKLRPQPSWDRTCTAAAAIGLLSELQLLPKFSS 346 (389)
Q Consensus 269 ~~~IlLDGTW--~QArKMfrrip~~akSp~L~~~LP~vsL~~~~~S~Y~LRkqp~~~~LSTaEAaa~lL~~L~~~~~l~~ 346 (389)
|-|||..+.+ .+..+.+++ -++|.+.++.. ..+.++...+..|..+
T Consensus 60 PDLIi~~~~~~~~~~~~~L~~-----------~gipvv~~~~~-------------~~~~~~~~~i~~lg~~-------- 107 (283)
T 2r79_A 60 PDILIGTEEMGPPPVLKQLEG-----------AGVRVETLSAK-------------PDLEALESNLKKLGDW-------- 107 (283)
T ss_dssp CSEEEECTTCCCHHHHHHHHH-----------TTCCEEECCCC-------------SSHHHHHHHHHHHHHH--------
T ss_pred CCEEEEeCccCcHHHHHHHHH-----------cCCcEEEecCC-------------CCHHHHHHHHHHHHHH--------
Confidence 4566665544 334444443 46888877421 2345555556666665
Q ss_pred CCCchHHHHHHHHHHHHHHHHHH
Q 016430 347 CGLDEAVEAIEDALAVLLEALTT 369 (389)
Q Consensus 347 ~G~~~~a~~L~~~f~~fi~~~~a 369 (389)
.|.++.++.+.+.|+.-++...+
T Consensus 108 ~g~~~~A~~l~~~~~~~~~~~~~ 130 (283)
T 2r79_A 108 LGVPQRAEAAELDYRQRLRRQAD 130 (283)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHH
Confidence 57788899998888887776554
No 10
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=12.10 E-value=1.5e+02 Score=25.54 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=24.9
Q ss_pred ccCCCCCCccchhhhccc-------CCCCCchHHHHHHHHHHHH
Q 016430 50 HIGDTDDGFITLQEWQGW-------GAVSPLPALVQQIVEDLKA 86 (389)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 86 (389)
.+...++..+|.+||.+| |-.-|-...|.+=.+||+.
T Consensus 107 ~m~~vSN~~fte~Ef~~w~~~~~~~~~~~PT~~~v~~K~~~i~~ 150 (153)
T 2bze_A 107 RLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKE 150 (153)
T ss_dssp CGGGBCCSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHHHH
T ss_pred EeeEeeCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 444667789999999999 3344555556666666554
Done!