Citrus Sinensis ID: 016431
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 389 | 2.2.26 [Sep-21-2011] | |||||||
| Q93YP9 | 488 | Sugar transporter ERD6-li | yes | no | 1.0 | 0.797 | 0.796 | 1e-177 | |
| Q9FRL3 | 487 | Sugar transporter ERD6-li | no | no | 1.0 | 0.798 | 0.784 | 1e-176 | |
| Q3ECP7 | 470 | Sugar transporter ERD6-li | no | no | 0.974 | 0.806 | 0.476 | 3e-97 | |
| P93051 | 463 | Sugar transporter ERD6-li | no | no | 0.976 | 0.820 | 0.446 | 6e-95 | |
| Q8LBI9 | 482 | Sugar transporter ERD6-li | no | no | 0.989 | 0.798 | 0.447 | 2e-92 | |
| O04036 | 496 | Sugar transporter ERD6 OS | no | no | 0.976 | 0.766 | 0.436 | 4e-92 | |
| Q0WQ63 | 470 | Sugar transporter ERD6-li | no | no | 0.976 | 0.808 | 0.450 | 4e-89 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.982 | 0.812 | 0.434 | 3e-85 | |
| Q8VZT3 | 462 | Sugar transporter ERD6-li | no | no | 0.984 | 0.829 | 0.448 | 2e-84 | |
| Q94CI6 | 478 | Sugar transporter ERD6-li | no | no | 0.974 | 0.792 | 0.438 | 3e-83 |
| >sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 623 bits (1606), Expect = e-177, Method: Compositional matrix adjust.
Identities = 310/389 (79%), Positives = 356/389 (91%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQIAEY+GRKGSLMIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYT
Sbjct: 100 MVGAIASGQIAEYVGRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYT 159
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEIAPQ MRG+LGSVNQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLF
Sbjct: 160 VPVYIAEIAPQTMRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLF 219
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMG+T+DFE+SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+
Sbjct: 220 FIPESPRWLAKMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRR 279
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RY+FPLM+GIGLL LQQL GINGVLFYSS IF +AG++SSNVATFG+GVVQVVATG+ TW
Sbjct: 280 RYYFPLMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATW 339
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DKAGRRLLL+ISS GM S +V+VAF+L+ FVS DS Y+IL ++S+VG+V +VIS
Sbjct: 340 LVDKAGRRLLLMISSIGMTISLVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISC 399
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLG+G IPW+IMSEILPVNIK LAGS+ATL NW VSW+VTMTAN LL WSSGGTF +Y +
Sbjct: 400 SLGMGPIPWLIMSEILPVNIKGLAGSIATLLNWFVSWLVTMTANMLLAWSSGGTFTLYAL 459
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
VC FTV FVSLWVPETKG++LEEIQ FR
Sbjct: 460 VCGFTVVFVSLWVPETKGKTLEEIQALFR 488
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 618 bits (1593), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/389 (78%), Positives = 352/389 (90%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQIAEYIGRKGSLMIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYT
Sbjct: 99 MVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYT 158
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEIAPQNMRG LGSVNQLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLF
Sbjct: 159 VPVYIAEIAPQNMRGGLGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLF 218
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMGMT++FE+SLQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+
Sbjct: 219 FIPESPRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRR 278
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RY+FPLM+GIGLLVLQQL GINGVLFYSS IF +AG++SSN ATFG+G +QVVAT ++TW
Sbjct: 279 RYYFPLMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTW 338
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DKAGRRLLL ISS GM S +V+ AF+L+ FVS DS YS L ILS+VG+V +V+ F
Sbjct: 339 LVDKAGRRLLLTISSVGMTISLVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFF 398
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLG+G IPW+IMSEILPVNIK LAGS+ATLANW SW++TMTAN LL WSSGGTF +YG+
Sbjct: 399 SLGMGPIPWLIMSEILPVNIKGLAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGL 458
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
VCAFTV FV+LWVPETKG++LEE+Q FR
Sbjct: 459 VCAFTVVFVTLWVPETKGKTLEELQSLFR 487
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 186/390 (47%), Positives = 268/390 (68%), Gaps = 11/390 (2%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
M+GA SG+IA+ IGR+ ++ + + I+GWL I SK + +L +GR L G+G+GV S+
Sbjct: 83 MIGAAMSGRIADMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFV 142
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEI P+ +RG +V+QL + +G+ + YLLG F+ WR+LA++G++PC + + GLF
Sbjct: 143 VPVYIAEITPKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLF 202
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
IPESPRWLAK+G E+FE +LQ LRG DIS E NEIK + + +L +
Sbjct: 203 VIPESPRWLAKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQP 262
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
+Y L++G+GL+VLQQ G+NG+ FY+S+IF +AG+ SS + + VVQ+ T +
Sbjct: 263 QYAKSLVVGVGLMVLQQFGGVNGIAFYASSIFESAGV-SSKIGMIAMVVVQIPMTTLGVL 321
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE---DSRFYSILGILSLVGLVTVV 297
LMDK+GRR LLLIS++G FLV ++F L+ FV + D+ + ++ G+L G
Sbjct: 322 LMDKSGRRPLLLISATGTCIGCFLVGLSFSLQ-FVKQLSGDASYLALTGVLVYTG----- 375
Query: 298 ISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLI 357
SFSLG+G IPWVIMSEI P++IK AGS+ T+ +W+ SWI++ T NFL++W+ GTF +
Sbjct: 376 -SFSLGMGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYV 434
Query: 358 YGIVCAFTVAFVSLWVPETKGRSLEEIQFS 387
+ VC TV FV+ VPETKGR+LEEIQ+S
Sbjct: 435 FATVCGATVIFVAKLVPETKGRTLEEIQYS 464
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 348 bits (892), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 172/385 (44%), Positives = 261/385 (67%), Gaps = 5/385 (1%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
M+GAI SG IA+ +GRKG++ +++ ++GWL I F+K L +GRL G+G+G SY
Sbjct: 79 MIGAITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYV 138
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VP++IAEIAP+ RG+L ++NQ+ + G+ +++++G V WRVLA++G++PC GLF
Sbjct: 139 VPIFIAEIAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLF 198
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAK+G +FE++L+ LRG DIS E EI+ + + R + +L ++
Sbjct: 199 FIPESPRWLAKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQR 258
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RY ++I GL+V QQ GING+ FY+S+IF AG + + V+QVV T +N
Sbjct: 259 RYIRSVLIAFGLMVFQQFGGINGICFYTSSIFEQAGF-PTRLGMIIYAVLQVVITALNAP 317
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
++D+AGR+ LLL+S++G+ + +V+F+L+ + + +L++VG++ + SF
Sbjct: 318 IVDRAGRKPLLLVSATGLVIGCLIAAVSFYLK----VHDMAHEAVPVLAVVGIMVYIGSF 373
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
S G+GA+PWV+MSEI P+NIK +AG +ATL NW +W V+ T NFL+ WSS GTFLIY
Sbjct: 374 SAGMGAMPWVVMSEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAA 433
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQ 385
+ A + FV VPETKG++LE+IQ
Sbjct: 434 INALAIVFVIAIVPETKGKTLEQIQ 458
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 339 bits (870), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/389 (44%), Positives = 255/389 (65%), Gaps = 4/389 (1%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
M+GA+ SG+I+++ GRKG++ +A I GWL + F+K + L +GR G+G+GV SY
Sbjct: 95 MLGAVMSGKISDFSGRKGAMRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYV 154
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEI+P+N+RG L ++NQL + IG +++L+G ++W+ LA+ G+ PC +L+ GL
Sbjct: 155 VPVYIAEISPKNLRGGLTTLNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLC 214
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAK G ++F +LQ LRG D DI+ E + I+ S+ + R +L K
Sbjct: 215 FIPESPRWLAKAGHEKEFRVALQKLRGKDADITNEADGIQVSIQALEILPKARIQDLVSK 274
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
+Y ++IG+ L+V QQ GING+ FY+S F AG +S + T + VQV T + T
Sbjct: 275 KYGRSVIIGVSLMVFQQFVGINGIGFYASETFVKAGFTSGKLGTIAIACVQVPITVLGTI 334
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DK+GRR L++IS+ G+ L +F L+G S + L++ G++ V +F
Sbjct: 335 LIDKSGRRPLIMISAGGIFLGCILTGTSFLLKG----QSLLLEWVPSLAVGGVLIYVAAF 390
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
S+G+G +PWVIMSEI P+N+K +AGS+ L NW +W V+ T NFL+ WSS GTF +Y
Sbjct: 391 SIGMGPVPWVIMSEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSA 450
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
A T+ FV+ VPETKG++LEEIQ R
Sbjct: 451 FAAATIIFVAKMVPETKGKTLEEIQACIR 479
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 338 bits (867), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 168/385 (43%), Positives = 258/385 (67%), Gaps = 5/385 (1%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
++GA+ SG++A+ +GRK +++ I GWL ++ ++++ +L GRLL G GVG+ SY
Sbjct: 109 LIGAVFSGKVADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYV 168
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
+PVYIAEIAP+++RGS NQL GI L +++G F+ WR+L V+G++PC + LF
Sbjct: 169 IPVYIAEIAPKHVRGSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLF 228
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAK+G ++ SSLQ LRG D DIS E N I+ ++ + + +EL ++
Sbjct: 229 FIPESPRWLAKLGRDKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQR 288
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RY +PL+IG+GL+ LQQL G +GV +Y+S++F G S+ + T + + V + T
Sbjct: 289 RYAYPLIIGVGLMFLQQLCGSSGVTYYASSLFNKGGFPSA-IGTSVIATIMVPKAMLATV 347
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DK GRR LL+ S S M S L+SV++ + F + I + +G++ ++SF
Sbjct: 348 LVDKMGRRTLLMASCSAMGLSALLLSVSYGFQSF----GILPELTPIFTCIGVLGHIVSF 403
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
++G+G +PW+IM+EI P+N+K AG++ T+ NWL WI+T T NF+L+W++ G FLI+ +
Sbjct: 404 AMGMGGLPWIIMAEIFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSM 463
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQ 385
V A ++ F+ VPETKGRSLEEIQ
Sbjct: 464 VSASSIVFIYFLVPETKGRSLEEIQ 488
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (841), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 174/386 (45%), Positives = 253/386 (65%), Gaps = 6/386 (1%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
++GAI SG+I+++IGRKG++ +++V + IGWLII +K L GR L G+G G +S+
Sbjct: 86 VLGAITSGKISDFIGRKGAMRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFV 145
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPV+IAEI+P+ +RG+L ++NQL + IG+ +L+G VNWR LA+ GV PC +L G +
Sbjct: 146 VPVFIAEISPRKLRGALATLNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTW 205
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWL +G DFE +LQ LRG +I+ E EI+ +AS + +L K
Sbjct: 206 FIPESPRWLEMVGRHSDFEIALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDK 265
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVN-T 239
+ +++G+GL+ QQ GINGV+FY+ IF +AG +S + + + QVV T + T
Sbjct: 266 KNIRFVIVGVGLMFFQQFVGINGVIFYAQQIFVSAG-ASPTLGSILYSIEQVVLTALGAT 324
Query: 240 WLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVIS 299
L+D+ GRR LL+ S+ GM L+ +F L+ I+ L++ G++ + S
Sbjct: 325 LLIDRLGRRPLLMASAVGMLIGCLLIGNSFLLKA----HGLALDIIPALAVSGVLVYIGS 380
Query: 300 FSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYG 359
FS+G+GAIPWVIMSEI P+N+K AG + T+ NWL SW+V+ T NFL+ WS GTF +YG
Sbjct: 381 FSIGMGAIPWVIMSEIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYG 440
Query: 360 IVCAFTVAFVSLWVPETKGRSLEEIQ 385
VC + F++ VPETKGR+LEEIQ
Sbjct: 441 GVCVLAIIFIAKLVPETKGRTLEEIQ 466
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (808), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/387 (43%), Positives = 253/387 (65%), Gaps = 5/387 (1%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
M+GAI SG++A+ +GRKG++ A + I GW+ ++ +KDS +L +GRL GF VG++SY
Sbjct: 83 MIGAIFSGKVADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYV 142
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
+PVYIAEI P+++RG+ NQL + G+ L Y++G FV+WR LA++G++PC L + LF
Sbjct: 143 IPVYIAEITPKHVRGAFVFANQLMQSCGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLF 202
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPR L K G ++ +SLQ LRG D DIS E N IK ++ R +L ++
Sbjct: 203 FIPESPRLLGKWGHEKECRASLQSLRGDDADISEEANTIKETMILFDEGPKSRVMDLFQR 262
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RY ++IG+GL++LQQLSG +G+++Y ++F G SS + + L V+ + +
Sbjct: 263 RYAPSVVIGVGLMLLQQLSGSSGLMYYVGSVFDKGGFPSS-IGSMILAVIMIPKALLGLI 321
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L++K GRR LLL S+ GM L+S +F + D + I + +G+V + SF
Sbjct: 322 LVEKMGRRPLLLASTGGMCFFSLLLSFSFCFRSYGMLD----ELTPIFTCIGVVGFISSF 377
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
++G+G +PW+IMSEI P+N+K AG++ TLANW WIV NF+L+W++ GTFLI+
Sbjct: 378 AVGMGGLPWIIMSEIFPMNVKVSAGTLVTLANWSFGWIVAFAYNFMLEWNASGTFLIFFT 437
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFS 387
+C + F+ VPETKGR+LE+IQ S
Sbjct: 438 ICGAGIVFIYAMVPETKGRTLEDIQAS 464
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZT3|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (801), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/388 (44%), Positives = 238/388 (61%), Gaps = 5/388 (1%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
M+GAI S + A G K +L +A + I GWL IS +KD +L MGR L G GVG+ISY
Sbjct: 77 MIGAIFSAKAASAFGHKMTLWVADLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYV 136
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEI P+++RG+ NQL G+ + Y G F++WR LA++G +PC + + GLF
Sbjct: 137 VPVYIAEITPKHVRGAFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLF 196
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAK G ++ E LQ LRG DI E EIK SV +S + + I L K
Sbjct: 197 FIPESPRWLAKKGRDKECEEVLQKLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEK 256
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RY L IGIGL++LQQL G G+ Y S +F AG + + L ++ V + +
Sbjct: 257 RYAHQLTIGIGLMLLQQLCGTAGISSYGSTLFKLAGF-PARIGMMVLSLIVVPKSLMGLI 315
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+D+ GRR LL+ S+ G+ S ++VAF V + I I +G+++ + F
Sbjct: 316 LVDRWGRRPLLMTSALGLCLSCITLAVAF----GVKDVPGIGKITPIFCFIGILSFTMMF 371
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
++G+GA+PW+IMSEI P++IK LAGS+ T+ANW WI NF+L WS GTF+I I
Sbjct: 372 AIGMGALPWIIMSEIFPMDIKVLAGSLVTIANWFTGWIANYAFNFMLVWSPSGTFIISAI 431
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSF 388
+C T+ F VPET+ +LEEIQ SF
Sbjct: 432 ICGATIVFTWCLVPETRRLTLEEIQLSF 459
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (790), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 170/388 (43%), Positives = 252/388 (64%), Gaps = 9/388 (2%)
Query: 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 61
+GA+ SG++A +GR+ ++ ++ + IIGW I+F+KD +L GR+ G G+G+ISY V
Sbjct: 87 IGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVV 146
Query: 62 PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFF 121
PVYIAEI+P+++RG+ NQL G+ + Y G F+NWR+LA+LG LPC + + GLFF
Sbjct: 147 PVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFF 206
Query: 122 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR 181
+PESPRWLAK+G ++ E+SL LRG + DIS E ++I+ + F +L +++
Sbjct: 207 VPESPRWLAKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQRK 266
Query: 182 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWL 241
Y + L++GIGL+++QQ SG + VL Y+S I AG S + +T LG+ + + L
Sbjct: 267 YRYTLVVGIGLMLIQQFSGSSAVLSYASTILRKAGFSVTIGSTL-LGLFMIPKAMIGVIL 325
Query: 242 MDKAGRRLLLLISSSGMAASFFLVSVAFFLEG--FVSEDSRFYSILGILSLVGLVTVVIS 299
+DK GRR LLL S SGM + L+ VAF L+ + E + ++ + + +G +
Sbjct: 326 VDKWGRRPLLLTSVSGMCITSMLIGVAFTLQKMQLLPELTPVFTFICVTLYIG------T 379
Query: 300 FSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYG 359
+++G+G +PWVIMSEI P+NIK AGS+ TL +W S IVT NFLL+WS+ GTF ++G
Sbjct: 380 YAIGLGGLPWVIMSEIFPMNIKVTAGSIVTLVSWSSSSIVTYAFNFLLEWSTQGTFYVFG 439
Query: 360 IVCAFTVAFVSLWVPETKGRSLEEIQFS 387
V + F+ L VPETKG SLEEIQ S
Sbjct: 440 AVGGLALLFIWLLVPETKGLSLEEIQAS 467
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 389 | ||||||
| 225430744 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 1.0 | 0.800 | 0.830 | 0.0 | |
| 147792214 | 486 | hypothetical protein VITISV_009034 [Viti | 0.997 | 0.798 | 0.829 | 0.0 | |
| 356559394 | 484 | PREDICTED: sugar transporter ERD6-like 6 | 1.0 | 0.803 | 0.809 | 0.0 | |
| 255561092 | 486 | sugar transporter, putative [Ricinus com | 1.0 | 0.800 | 0.814 | 0.0 | |
| 357518263 | 486 | Sugar transporter ERD6-like protein [Med | 1.0 | 0.800 | 0.807 | 0.0 | |
| 255538660 | 487 | sugar transporter, putative [Ricinus com | 1.0 | 0.798 | 0.812 | 0.0 | |
| 224065573 | 487 | predicted protein [Populus trichocarpa] | 1.0 | 0.798 | 0.830 | 0.0 | |
| 356503024 | 487 | PREDICTED: sugar transporter ERD6-like 6 | 1.0 | 0.798 | 0.804 | 1e-180 | |
| 224097006 | 488 | predicted protein [Populus trichocarpa] | 1.0 | 0.797 | 0.794 | 1e-180 | |
| 1209756 | 490 | integral membrane protein [Beta vulgaris | 1.0 | 0.793 | 0.784 | 1e-176 |
| >gi|225430744|ref|XP_002266704.1| PREDICTED: sugar transporter ERD6-like 6 [Vitis vinifera] gi|297735148|emb|CBI17510.3| unnamed protein product [Vitis vinifera] gi|310877886|gb|ADP37174.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/389 (83%), Positives = 362/389 (93%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQIAEYIGRKGSLMIA++PNIIGWL ISF++DSSFL+MGRLLEGFGVGVISYT
Sbjct: 98 MVGAIASGQIAEYIGRKGSLMIASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYT 157
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEI+PQNMRG LGSVNQLSVT+GI+LAY+LGLFVNWRVLAVLG+LPCT+LIPGLF
Sbjct: 158 VPVYIAEISPQNMRGGLGSVNQLSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLF 217
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMGMTEDFE+SLQVLRGFDTDIS+EV EIKRSVAS+ +RT I+F++LKRK
Sbjct: 218 FIPESPRWLAKMGMTEDFEASLQVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRK 277
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RYWFPLM+GIGLL+LQQLSGINGVLFYSSNIF AGISSS++AT GLGV+QV+ATGV TW
Sbjct: 278 RYWFPLMVGIGLLMLQQLSGINGVLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTW 337
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DKAGRRLLL++SSSGM S LVSVAF+L+ +SEDSRFYSILGILSLVGLV +VI+F
Sbjct: 338 LVDKAGRRLLLIVSSSGMTLSLLLVSVAFYLKDVISEDSRFYSILGILSLVGLVALVITF 397
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLGVGAIPWVIMSEILPV+IK LAGS+ATLANWL SW VTMTAN LL WS GGTF IY +
Sbjct: 398 SLGVGAIPWVIMSEILPVSIKGLAGSIATLANWLTSWAVTMTANLLLSWSKGGTFAIYTL 457
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
+ AFT+ FV+LWVPETKGR+LEEIQ SFR
Sbjct: 458 MTAFTIVFVTLWVPETKGRTLEEIQRSFR 486
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147792214|emb|CAN72983.1| hypothetical protein VITISV_009034 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/388 (82%), Positives = 361/388 (93%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQIAEYIGRKGSLMIA++PNIIGWL ISF++DSSFL+MGRLLEGFGVGVISYT
Sbjct: 98 MVGAIASGQIAEYIGRKGSLMIASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYT 157
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEI+PQNMRG LGSVNQLSVT+GI+LAY+LGLFVNWRVLAVLG+LPCT+LIPGLF
Sbjct: 158 VPVYIAEISPQNMRGGLGSVNQLSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLF 217
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMGMTEDFE+SLQVLRGFDTDIS+EV EIKRSVAS+ +RT I+F++LKRK
Sbjct: 218 FIPESPRWLAKMGMTEDFEASLQVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRK 277
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RYWFPLM+GIGLL+LQQLSGINGVLFYSSNIF AGISSS++AT GLGV+QV+ATGV TW
Sbjct: 278 RYWFPLMVGIGLLMLQQLSGINGVLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTW 337
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DKAGRRLLL++SSSGM S LVSVAF+L+ +SEDSRFYSILGILSLVGLV +VI+F
Sbjct: 338 LVDKAGRRLLLIVSSSGMTLSLLLVSVAFYLKDVISEDSRFYSILGILSLVGLVALVITF 397
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLGVGAIPWVIMSEILPV+IK LAGS+ATLANWL SW VTMTAN LL WS GGTF IY +
Sbjct: 398 SLGVGAIPWVIMSEILPVSIKGLAGSIATLANWLTSWAVTMTANLLLSWSKGGTFAIYTL 457
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSF 388
+ AFT+ FV+LWVPETKGR+LEEIQ SF
Sbjct: 458 MTAFTIVFVTLWVPETKGRTLEEIQRSF 485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559394|ref|XP_003547984.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/389 (80%), Positives = 360/389 (92%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQIAEYIGRKGSLMIAA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISY
Sbjct: 96 MVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYV 155
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEIAPQN+RG LGSVNQLSVTIGIMLAYLLGLFVNWRVLA+LG+LPCT+LIPGLF
Sbjct: 156 VPVYIAEIAPQNLRGGLGSVNQLSVTIGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLF 215
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMGM ++FE+SLQVLRGFDTDIS+EV+EIKRSVAS+ +R AIRFA+LKRK
Sbjct: 216 FIPESPRWLAKMGMIDEFETSLQVLRGFDTDISVEVHEIKRSVASTGKRAAIRFADLKRK 275
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RYWFPLM+GIGLLVLQQLSGING+LFYS+ IFANAGISSS AT GLG VQV+ATG++TW
Sbjct: 276 RYWFPLMVGIGLLVLQQLSGINGILFYSTTIFANAGISSSEAATVGLGAVQVIATGISTW 335
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DK+GRRLLL+ISSS M S +VS+AF+LEG VSEDS +SILGI+S+VGLV +VI F
Sbjct: 336 LVDKSGRRLLLIISSSVMTVSLLIVSIAFYLEGVVSEDSHLFSILGIVSIVGLVAMVIGF 395
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLG+G IPW+IMSEILPVNIK LAGS+AT+ NWL+SW +TMTAN LL+WSSGGTF IY +
Sbjct: 396 SLGLGPIPWLIMSEILPVNIKGLAGSIATMGNWLISWGITMTANLLLNWSSGGTFTIYTV 455
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
V AFT+AF+++WVPETKGR+LEEIQFSFR
Sbjct: 456 VAAFTIAFIAMWVPETKGRTLEEIQFSFR 484
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561092|ref|XP_002521558.1| sugar transporter, putative [Ricinus communis] gi|223539236|gb|EEF40829.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/389 (81%), Positives = 362/389 (93%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQ+AEYIGRKGSLM+AA+PNIIGWL ISF+KDSSFLFMGRLLEGFGVG+ISYT
Sbjct: 98 MVGAIASGQMAEYIGRKGSLMVAAIPNIIGWLSISFAKDSSFLFMGRLLEGFGVGIISYT 157
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEIAPQN RGSLGSVNQLSVT+GIMLAYLLGLFV+WR+LAVLG+LPCT+LIPGLF
Sbjct: 158 VPVYIAEIAPQNRRGSLGSVNQLSVTLGIMLAYLLGLFVHWRLLAVLGILPCTILIPGLF 217
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMGMTEDFE+SLQVLRGFDTDIS EVNEIKRSVASS++R+ +RFA+L+R+
Sbjct: 218 FIPESPRWLAKMGMTEDFEASLQVLRGFDTDISAEVNEIKRSVASSTKRSTVRFADLRRR 277
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RYWFPLM+GIGLL+LQQLSGING+LFYSSNIF +AG+SS N+AT GLGV+QV+ATGV TW
Sbjct: 278 RYWFPLMVGIGLLMLQQLSGINGILFYSSNIFESAGLSSGNLATVGLGVIQVLATGVTTW 337
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DKAGRRLLL++S+SG+ S LV+VAF+LEG VS+DS Y I+GILSLVGLV ++I F
Sbjct: 338 LVDKAGRRLLLIVSTSGITVSLLLVAVAFYLEGNVSKDSHLYGIMGILSLVGLVAMIIFF 397
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLG+GAIPW+IMSEILPVNIK LAGSVATLANWL SW+VTMTAN LL WSSGGTF ++ +
Sbjct: 398 SLGLGAIPWIIMSEILPVNIKGLAGSVATLANWLTSWLVTMTANLLLSWSSGGTFTMFTL 457
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
V AFTV FV+LWVPETKGR+LEEIQ SFR
Sbjct: 458 VSAFTVVFVTLWVPETKGRTLEEIQSSFR 486
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518263|ref|XP_003629420.1| Sugar transporter ERD6-like protein [Medicago truncatula] gi|355523442|gb|AET03896.1| Sugar transporter ERD6-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/389 (80%), Positives = 359/389 (92%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQIAEY+GRKGSLMIA++PNIIGWL ISF+KDSSFLFMGRLLEGFGVG+ISY
Sbjct: 98 MVGAIASGQIAEYVGRKGSLMIASIPNIIGWLAISFAKDSSFLFMGRLLEGFGVGIISYV 157
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEIAP+NMRGSLGSVNQLSVTIGIMLAYLLGLF NWRVLA+LG+LPCT+LIPGLF
Sbjct: 158 VPVYIAEIAPENMRGSLGSVNQLSVTIGIMLAYLLGLFANWRVLAILGILPCTVLIPGLF 217
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMGM E+FE+SLQVLRGFDTDIS+EV+EIK++VAS+ +R IRFA+L+RK
Sbjct: 218 FIPESPRWLAKMGMMEEFETSLQVLRGFDTDISVEVHEIKKAVASNGKRATIRFADLQRK 277
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RYWFPL +GIGLLVLQQLSGINGVLFYS++IFANAGISSSN AT GLG +QV+ATGV TW
Sbjct: 278 RYWFPLSVGIGLLVLQQLSGINGVLFYSTSIFANAGISSSNAATVGLGAIQVIATGVATW 337
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DK+GRR+LL+ISSS M AS +VS+AF+LEG V +DS+++SILGI+S+VGLV +VI F
Sbjct: 338 LVDKSGRRVLLIISSSLMTASLLVVSIAFYLEGVVEKDSQYFSILGIISVVGLVVMVIGF 397
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLG+G IPW+IMSEILPVNIK LAGS AT+ANWLV+WI+TMTAN LL WSSGGTFLIY +
Sbjct: 398 SLGLGPIPWLIMSEILPVNIKGLAGSTATMANWLVAWIITMTANLLLTWSSGGTFLIYTV 457
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
V AFTV F SLWVPETKGR+LEEIQFS R
Sbjct: 458 VAAFTVVFTSLWVPETKGRTLEEIQFSLR 486
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538660|ref|XP_002510395.1| sugar transporter, putative [Ricinus communis] gi|223551096|gb|EEF52582.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/389 (81%), Positives = 357/389 (91%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQIAEYIGRKGSLMIAA+PNI+GWL ISF+ D+SFL+MGRLLEGFGVG+ISYT
Sbjct: 99 MVGAIASGQIAEYIGRKGSLMIAAIPNILGWLAISFAHDASFLYMGRLLEGFGVGIISYT 158
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEIAPQN+RG+LGSVNQLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLF
Sbjct: 159 VPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVQWRILAVLGILPCTLLIPGLF 218
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMGMTEDFE+SLQVLRGFDTDIS+EVNEIKRSVAS+SRR+ IRF ELKR+
Sbjct: 219 FIPESPRWLAKMGMTEDFEASLQVLRGFDTDISLEVNEIKRSVASTSRRSTIRFVELKRR 278
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RYW PLMIGIGLLVLQQLSGINGVLFYSS IF +AG+ +SNVAT GLG +QV+ATGV T
Sbjct: 279 RYWLPLMIGIGLLVLQQLSGINGVLFYSSTIFESAGVKNSNVATCGLGAIQVIATGVTTS 338
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
++DKAGRRLLL+ISSS MA S LV+V+FF++ FVS+ S YSILGILS+VG++ +V+ F
Sbjct: 339 IVDKAGRRLLLIISSSAMAISLLLVAVSFFVQDFVSDQSHLYSILGILSIVGVLGMVVGF 398
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLG+G IPW+IMSEILPVNIK LAGSVATLANWL S++VTMTAN LL WSSGGTF IY I
Sbjct: 399 SLGMGPIPWIIMSEILPVNIKGLAGSVATLANWLFSFVVTMTANLLLSWSSGGTFTIYLI 458
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
VCA T+AFV++WVPETKGR+LEEIQ SFR
Sbjct: 459 VCALTIAFVAIWVPETKGRTLEEIQSSFR 487
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065573|ref|XP_002301864.1| predicted protein [Populus trichocarpa] gi|222843590|gb|EEE81137.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/389 (83%), Positives = 365/389 (93%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQIAEYIGRKGSLMIAA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISYT
Sbjct: 99 MVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYT 158
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEIAPQN+RG+LGSVNQLSVTIGIMLAYLLGLFV WR+LAVLG+LPCT+LIPGLF
Sbjct: 159 VPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVEWRILAVLGILPCTILIPGLF 218
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMGMTEDFESSLQVLRGFDTDIS+EV+EIKR++AS+SRRT IRFAELKRK
Sbjct: 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISVEVHEIKRAIASTSRRTTIRFAELKRK 278
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RYWFPL +GIGLLVLQQLSGINGVLFYSSNIFA AGI SSNVAT G+G +QV+ATGV TW
Sbjct: 279 RYWFPLTVGIGLLVLQQLSGINGVLFYSSNIFATAGIKSSNVATVGVGAIQVIATGVTTW 338
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+D+ GRRLLL++S+SGM S +V+V+FF++GFV EDS YSILGILS+VG+V +V++F
Sbjct: 339 LVDRTGRRLLLIVSTSGMTISLLIVAVSFFVKGFVPEDSSLYSILGILSVVGVVAMVVTF 398
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLG+GAIPWVIMSEILPVNIKSLAGSVATLANWL+S++VTMTAN LLDWS+GGTF+IY +
Sbjct: 399 SLGMGAIPWVIMSEILPVNIKSLAGSVATLANWLISFLVTMTANLLLDWSTGGTFIIYSV 458
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
V AF V FVS+WVPETKGR+LEEIQ SFR
Sbjct: 459 VSAFAVVFVSMWVPETKGRTLEEIQSSFR 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503024|ref|XP_003520312.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 313/389 (80%), Positives = 360/389 (92%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQIAEYIGRKGSLMIAA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISY
Sbjct: 99 MVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYV 158
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEIAPQ++RG LGSVNQLS+TIGIMLAYLLGLFVNWRVLA+LG+LPCT+LIPGLF
Sbjct: 159 VPVYIAEIAPQHLRGGLGSVNQLSITIGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLF 218
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMGMT++FE+SLQVLRGFDTDIS+EV EIKRSVAS+ +R IRFA+LKRK
Sbjct: 219 FIPESPRWLAKMGMTDEFETSLQVLRGFDTDISVEVYEIKRSVASTGKRATIRFADLKRK 278
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RYWFPLM+GIGLLVLQQLSGINGVLFYS+ IFANAGISSS AT GLG VQV+ATG++TW
Sbjct: 279 RYWFPLMVGIGLLVLQQLSGINGVLFYSTTIFANAGISSSEAATVGLGAVQVIATGISTW 338
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DK+GRRLLL+ISSS M S +VS+AF+LEG VSEDS +S+LGI+S+VGLV +VI F
Sbjct: 339 LVDKSGRRLLLMISSSVMTVSLLIVSIAFYLEGVVSEDSHLFSMLGIVSVVGLVVMVIGF 398
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLG+G IPW+IMSEILPVNIK LAGS+AT+ NWL+SW++TMTAN LL+W+SGGTF IY +
Sbjct: 399 SLGLGPIPWLIMSEILPVNIKGLAGSIATMGNWLISWVITMTANLLLNWNSGGTFTIYTV 458
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
V AFT+AF++LWVPETKGR+LEEIQFSFR
Sbjct: 459 VAAFTIAFIALWVPETKGRTLEEIQFSFR 487
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097006|ref|XP_002310808.1| predicted protein [Populus trichocarpa] gi|222853711|gb|EEE91258.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 309/389 (79%), Positives = 354/389 (91%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
M+GA+ SGQ+AEYIGRKGSL++AAVPNIIGWL ISF+ DSSFLFMGRLLEGFGVG+ISYT
Sbjct: 100 MIGALVSGQLAEYIGRKGSLVVAAVPNIIGWLSISFAVDSSFLFMGRLLEGFGVGIISYT 159
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEIAPQ+MRGSLGSVNQLSVTIGI+L+YLLGLFVNWRVLAVLG PC LLI GLF
Sbjct: 160 VPVYIAEIAPQDMRGSLGSVNQLSVTIGILLSYLLGLFVNWRVLAVLGCFPCALLILGLF 219
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMGMTEDFE+SLQVLRG+DTDI+ EVNEIKR+VASSS+RT IRFA+LKR+
Sbjct: 220 FIPESPRWLAKMGMTEDFEASLQVLRGYDTDITAEVNEIKRAVASSSKRTTIRFADLKRR 279
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RYWFPLM+GIGLLVLQQ SGING+ FYSSNIFANAGISSSN+AT GLG +QV+ATG+++W
Sbjct: 280 RYWFPLMVGIGLLVLQQFSGINGIFFYSSNIFANAGISSSNLATCGLGAIQVIATGISSW 339
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
LMDKAGRRLLL+IS++G+ S LV++AF+L+G + +DS Y I+GI+SL GLV VVI F
Sbjct: 340 LMDKAGRRLLLIISTTGVTLSLLLVAIAFYLQGILPQDSDLYHIMGIVSLGGLVAVVIFF 399
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
S+G+GAIPW+IMSEILPVNIK +AGSVATLANWL SW+VTMTAN L+ WSS GTF IY +
Sbjct: 400 SVGLGAIPWIIMSEILPVNIKGIAGSVATLANWLASWLVTMTANLLMSWSSAGTFTIYTV 459
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
V AFTV FVSLWVPETKGR+LEEIQ SFR
Sbjct: 460 VSAFTVIFVSLWVPETKGRTLEEIQLSFR 488
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1209756|gb|AAB53155.1| integral membrane protein [Beta vulgaris] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/389 (78%), Positives = 358/389 (92%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQI+EYIGRKGSLMIAA+PNIIGWL ISF+KDSSFL+MGR+LEGFGVG+ISYT
Sbjct: 101 MVGAIASGQISEYIGRKGSLMIAAIPNIIGWLAISFAKDSSFLYMGRMLEGFGVGIISYT 160
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYI+EIAPQN+RG+LGSVNQLSVTIGIML+Y+LGLFV WR+LAVLG+LPCT+LIPGLF
Sbjct: 161 VPVYISEIAPQNLRGALGSVNQLSVTIGIMLSYMLGLFVPWRILAVLGILPCTILIPGLF 220
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMGM E+FE SLQVLRGFDTDIS+EVNEIKRSVASSS+RT IRFAEL+++
Sbjct: 221 FIPESPRWLAKMGMMEEFEVSLQVLRGFDTDISLEVNEIKRSVASSSKRTTIRFAELRQR 280
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RYW PLMIG GLL+LQQLSGINGVLFYSS IF AG++SSN ATFGLG VQV+AT V TW
Sbjct: 281 RYWLPLMIGNGLLILQQLSGINGVLFYSSTIFKEAGVTSSNAATFGLGAVQVIATVVTTW 340
Query: 241 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DK+GRRLLL++SSSGM S +V+++FFL+ VS++S +YS+ ILS+VG+V +V++F
Sbjct: 341 LVDKSGRRLLLIVSSSGMTLSLLVVAMSFFLKEMVSDESTWYSVFSILSVVGVVAMVVTF 400
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLG+GAIPW+IMSEILP+NIK LAGS+ATLANW V+WIVTMTAN +L W+SGGTF IY +
Sbjct: 401 SLGIGAIPWIIMSEILPINIKGLAGSIATLANWFVAWIVTMTANIMLSWNSGGTFSIYMV 460
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
VCAFTVAFV +WVPETKGR+LEEIQ+SFR
Sbjct: 461 VCAFTVAFVVIWVPETKGRTLEEIQWSFR 489
|
Source: Beta vulgaris Species: Beta vulgaris Genus: Beta Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 389 | ||||||
| TAIR|locus:2016407 | 488 | AT1G19450 [Arabidopsis thalian | 1.0 | 0.797 | 0.766 | 9.6e-160 | |
| TAIR|locus:2025132 | 487 | ERDL6 "ERD6-like 6" [Arabidops | 1.0 | 0.798 | 0.755 | 2.5e-159 | |
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.982 | 0.812 | 0.457 | 8.6e-88 | |
| TAIR|locus:2066400 | 463 | AT2G48020 [Arabidopsis thalian | 0.976 | 0.820 | 0.428 | 5.4e-86 | |
| TAIR|locus:2144975 | 482 | AT5G18840 "AT5G18840" [Arabido | 0.989 | 0.798 | 0.431 | 8e-85 | |
| TAIR|locus:2036084 | 496 | ERD6 "EARLY RESPONSE TO DEHYDR | 0.976 | 0.766 | 0.415 | 2.4e-83 | |
| TAIR|locus:2096219 | 470 | AT3G05150 [Arabidopsis thalian | 0.976 | 0.808 | 0.435 | 1e-82 | |
| TAIR|locus:2079802 | 462 | AT3G05400 [Arabidopsis thalian | 0.984 | 0.829 | 0.430 | 1.6e-77 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.979 | 0.797 | 0.409 | 1.9e-76 | |
| TAIR|locus:505006329 | 467 | AT3G05165 [Arabidopsis thalian | 0.976 | 0.813 | 0.408 | 8.1e-76 |
| TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1556 (552.8 bits), Expect = 9.6e-160, P = 9.6e-160
Identities = 298/389 (76%), Positives = 340/389 (87%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQIAEY+GRKGSLMIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYT
Sbjct: 100 MVGAIASGQIAEYVGRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYT 159
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEIAPQ MRG+LGSVNQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLF
Sbjct: 160 VPVYIAEIAPQTMRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLF 219
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMG+T+DFE+SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+
Sbjct: 220 FIPESPRWLAKMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRR 279
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RY+FPLM+GIGLL LQQL GINGVLFYSS IF +AG++SSNVATFG+GVVQVVATG+ TW
Sbjct: 280 RYYFPLMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATW 339
Query: 241 LMDKAGRRXXXXXXXXGMXXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DKAGRR GM + FVS DS Y+IL ++S+VG+V +VIS
Sbjct: 340 LVDKAGRRLLLMISSIGMTISLVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISC 399
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLG+G IPW+IMSEILPVNIK LAGS+ATL NW VSW+VTMTAN LL WSSGGTF +Y +
Sbjct: 400 SLGMGPIPWLIMSEILPVNIKGLAGSIATLLNWFVSWLVTMTANMLLAWSSGGTFTLYAL 459
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
VC FTV FVSLWVPETKG++LEEIQ FR
Sbjct: 460 VCGFTVVFVSLWVPETKGKTLEEIQALFR 488
|
|
| TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1552 (551.4 bits), Expect = 2.5e-159, P = 2.5e-159
Identities = 294/389 (75%), Positives = 338/389 (86%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGAIASGQIAEYIGRKGSLMIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYT
Sbjct: 99 MVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYT 158
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEIAPQNMRG LGSVNQLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLF
Sbjct: 159 VPVYIAEIAPQNMRGGLGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLF 218
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAKMGMT++FE+SLQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+
Sbjct: 219 FIPESPRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRR 278
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RY+FPLM+GIGLLVLQQL GINGVLFYSS IF +AG++SSN ATFG+G +QVVAT ++TW
Sbjct: 279 RYYFPLMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTW 338
Query: 241 LMDKAGRRXXXXXXXXGMXXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DKAGRR GM + FVS DS YS L ILS+VG+V +V+ F
Sbjct: 339 LVDKAGRRLLLTISSVGMTISLVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFF 398
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLG+G IPW+IMSEILPVNIK LAGS+ATLANW SW++TMTAN LL WSSGGTF +YG+
Sbjct: 399 SLGMGPIPWLIMSEILPVNIKGLAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGL 458
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
VCAFTV FV+LWVPETKG++LEE+Q FR
Sbjct: 459 VCAFTVVFVTLWVPETKGKTLEELQSLFR 487
|
|
| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 177/387 (45%), Positives = 253/387 (65%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
M+GA SG+IA+ IGR+ ++ + + I+GWL I SK + +L +GR L G+G+GV S+
Sbjct: 83 MIGAAMSGRIADMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFV 142
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEI P+ +RG +V+QL + +G+ + YLLG F+ WR+LA++G++PC + + GLF
Sbjct: 143 VPVYIAEITPKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLF 202
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
IPESPRWLAK+G E+FE +LQ LRG DIS E NEIK + + +L +
Sbjct: 203 VIPESPRWLAKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQP 262
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
+Y L++G+GL+VLQQ G+NG+ FY+S+IF +AG+SS + + VVQ+ T +
Sbjct: 263 QYAKSLVVGVGLMVLQQFGGVNGIAFYASSIFESAGVSSK-IGMIAMVVVQIPMTTLGVL 321
Query: 241 LMDKAGRRXXXXXXXXGMXXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISF 300
LMDK+GRR G + FV + S S L +L G++ SF
Sbjct: 322 LMDKSGRRPLLLISATGTCIGCFLVGLSFSLQ-FVKQLSGDASYL---ALTGVLVYTGSF 377
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
SLG+G IPWVIMSEI P++IK AGS+ T+ +W+ SWI++ T NFL++W+ GTF ++
Sbjct: 378 SLGMGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFAT 437
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFS 387
VC TV FV+ VPETKGR+LEEIQ+S
Sbjct: 438 VCGATVIFVAKLVPETKGRTLEEIQYS 464
|
|
| TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
Identities = 165/385 (42%), Positives = 248/385 (64%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
M+GAI SG IA+ +GRKG++ +++ ++GWL I F+K L +GRL G+G+G SY
Sbjct: 79 MIGAITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYV 138
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VP++IAEIAP+ RG+L ++NQ+ + G+ +++++G V WRVLA++G++PC GLF
Sbjct: 139 VPIFIAEIAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLF 198
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAK+G +FE++L+ LRG DIS E EI+ + + R + +L ++
Sbjct: 199 FIPESPRWLAKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQR 258
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RY ++I GL+V QQ GING+ FY+S+IF AG + + V+QVV T +N
Sbjct: 259 RYIRSVLIAFGLMVFQQFGGINGICFYTSSIFEQAGFPT-RLGMIIYAVLQVVITALNAP 317
Query: 241 LMDKAGRRXXXXXXXXGMXXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISF 300
++D+AGR+ G+ ++ + + +L++VG++ + SF
Sbjct: 318 IVDRAGRKPLLLVSATGLVIGCLIAAVSF----YLKVHDMAHEAVPVLAVVGIMVYIGSF 373
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
S G+GA+PWV+MSEI P+NIK +AG +ATL NW +W V+ T NFL+ WSS GTFLIY
Sbjct: 374 SAGMGAMPWVVMSEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAA 433
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQ 385
+ A + FV VPETKG++LE+IQ
Sbjct: 434 INALAIVFVIAIVPETKGKTLEQIQ 458
|
|
| TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
Identities = 168/389 (43%), Positives = 245/389 (62%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
M+GA+ SG+I+++ GRKG++ +A I GWL + F+K + L +GR G+G+GV SY
Sbjct: 95 MLGAVMSGKISDFSGRKGAMRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYV 154
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEI+P+N+RG L ++NQL + IG +++L+G ++W+ LA+ G+ PC +L+ GL
Sbjct: 155 VPVYIAEISPKNLRGGLTTLNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLC 214
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAK G ++F +LQ LRG D DI+ E + I+ S+ + R +L K
Sbjct: 215 FIPESPRWLAKAGHEKEFRVALQKLRGKDADITNEADGIQVSIQALEILPKARIQDLVSK 274
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
+Y ++IG+ L+V QQ GING+ FY+S F AG +S + T + VQV T + T
Sbjct: 275 KYGRSVIIGVSLMVFQQFVGINGIGFYASETFVKAGFTSGKLGTIAIACVQVPITVLGTI 334
Query: 241 LMDKAGRRXXXXXXXXGMXXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DK+GRR G+ +G S + L++ G++ V +F
Sbjct: 335 LIDKSGRRPLIMISAGGIFLGCILTGTSFLLKG----QSLLLEWVPSLAVGGVLIYVAAF 390
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
S+G+G +PWVIMSEI P+N+K +AGS+ L NW +W V+ T NFL+ WSS GTF +Y
Sbjct: 391 SIGMGPVPWVIMSEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSA 450
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSFR 389
A T+ FV+ VPETKG++LEEIQ R
Sbjct: 451 FAAATIIFVAKMVPETKGKTLEEIQACIR 479
|
|
| TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 160/385 (41%), Positives = 246/385 (63%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
++GA+ SG++A+ +GRK +++ I GWL ++ ++++ +L GRLL G GVG+ SY
Sbjct: 109 LIGAVFSGKVADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYV 168
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
+PVYIAEIAP+++RGS NQL GI L +++G F+ WR+L V+G++PC + LF
Sbjct: 169 IPVYIAEIAPKHVRGSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLF 228
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAK+G ++ SSLQ LRG D DIS E N I+ ++ + + +EL ++
Sbjct: 229 FIPESPRWLAKLGRDKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQR 288
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RY +PL+IG+GL+ LQQL G +GV +Y+S++F G S+ + T + + V + T
Sbjct: 289 RYAYPLIIGVGLMFLQQLCGSSGVTYYASSLFNKGGFPSA-IGTSVIATIMVPKAMLATV 347
Query: 241 LMDKAGRRXXXXXXXXGMXXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+DK GRR M + F + I + +G++ ++SF
Sbjct: 348 LVDKMGRRTLLMASCSAMGLSALLLSVSYGFQSF----GILPELTPIFTCIGVLGHIVSF 403
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
++G+G +PW+IM+EI P+N+K AG++ T+ NWL WI+T T NF+L+W++ G FLI+ +
Sbjct: 404 AMGMGGLPWIIMAEIFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSM 463
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQ 385
V A ++ F+ VPETKGRSLEEIQ
Sbjct: 464 VSASSIVFIYFLVPETKGRSLEEIQ 488
|
|
| TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 168/386 (43%), Positives = 243/386 (62%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
++GAI SG+I+++IGRKG++ +++V + IGWLII +K L GR L G+G G +S+
Sbjct: 86 VLGAITSGKISDFIGRKGAMRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFV 145
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPV+IAEI+P+ +RG+L ++NQL + IG+ +L+G VNWR LA+ GV PC +L G +
Sbjct: 146 VPVFIAEISPRKLRGALATLNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTW 205
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWL +G DFE +LQ LRG +I+ E EI+ +AS + +L K
Sbjct: 206 FIPESPRWLEMVGRHSDFEIALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDK 265
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVN-T 239
+ +++G+GL+ QQ GINGV+FY+ IF +AG +S + + + QVV T + T
Sbjct: 266 KNIRFVIVGVGLMFFQQFVGINGVIFYAQQIFVSAG-ASPTLGSILYSIEQVVLTALGAT 324
Query: 240 WLMDKAGRRXXXXXXXXGMXXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVIS 299
L+D+ GRR GM + I+ L++ G++ + S
Sbjct: 325 LLIDRLGRRPLLMASAVGMLIGCLLIGNSF----LLKAHGLALDIIPALAVSGVLVYIGS 380
Query: 300 FSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYG 359
FS+G+GAIPWVIMSEI P+N+K AG + T+ NWL SW+V+ T NFL+ WS GTF +YG
Sbjct: 381 FSIGMGAIPWVIMSEIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYG 440
Query: 360 IVCAFTVAFVSLWVPETKGRSLEEIQ 385
VC + F++ VPETKGR+LEEIQ
Sbjct: 441 GVCVLAIIFIAKLVPETKGRTLEEIQ 466
|
|
| TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 167/388 (43%), Positives = 227/388 (58%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
M+GAI S + A G K +L +A + I GWL IS +KD +L MGR L G GVG+ISY
Sbjct: 77 MIGAIFSAKAASAFGHKMTLWVADLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYV 136
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 120
VPVYIAEI P+++RG+ NQL G+ + Y G F++WR LA++G +PC + + GLF
Sbjct: 137 VPVYIAEITPKHVRGAFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLF 196
Query: 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 180
FIPESPRWLAK G ++ E LQ LRG DI E EIK SV +S + + I L K
Sbjct: 197 FIPESPRWLAKKGRDKECEEVLQKLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEK 256
Query: 181 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 240
RY L IGIGL++LQQL G G+ Y S +F AG + + L ++ V + +
Sbjct: 257 RYAHQLTIGIGLMLLQQLCGTAGISSYGSTLFKLAGFPA-RIGMMVLSLIVVPKSLMGLI 315
Query: 241 LMDKAGRRXXXXXXXXGMXXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+D+ GRR G+ V + I I +G+++ + F
Sbjct: 316 LVDRWGRRPLLMTSALGLCLSCITLAVAFG----VKDVPGIGKITPIFCFIGILSFTMMF 371
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
++G+GA+PW+IMSEI P++IK LAGS+ T+ANW WI NF+L WS GTF+I I
Sbjct: 372 AIGMGALPWIIMSEIFPMDIKVLAGSLVTIANWFTGWIANYAFNFMLVWSPSGTFIISAI 431
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFSF 388
+C T+ F VPET+ +LEEIQ SF
Sbjct: 432 ICGATIVFTWCLVPETRRLTLEEIQLSF 459
|
|
| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 158/386 (40%), Positives = 237/386 (61%)
Query: 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 61
+GA+ SG++A +GR+ ++ ++ + IIGW I+F+KD +L GR+ G G+G+ISY V
Sbjct: 87 IGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVV 146
Query: 62 PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFF 121
PVYIAEI+P+++RG+ NQL G+ + Y G F+NWR+LA+LG LPC + + GLFF
Sbjct: 147 PVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFF 206
Query: 122 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR 181
+PESPRWLAK+G ++ E+SL LRG + DIS E ++I+ + F +L +++
Sbjct: 207 VPESPRWLAKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQRK 266
Query: 182 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWL 241
Y + L++GIGL+++QQ SG + VL Y+S I AG S + +T LG+ + + L
Sbjct: 267 YRYTLVVGIGLMLIQQFSGSSAVLSYASTILRKAGFSVTIGSTL-LGLFMIPKAMIGVIL 325
Query: 242 MDKAGRRXXXXXXXXGMXXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFS 301
+DK GRR GM + + + + + + + +++
Sbjct: 326 VDKWGRRPLLLTSVSGMCITSMLIGVAFTLQKM----QLLPELTPVFTFICVTLYIGTYA 381
Query: 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIV 361
+G+G +PWVIMSEI P+NIK AGS+ TL +W S IVT NFLL+WS+ GTF ++G V
Sbjct: 382 IGLGGLPWVIMSEIFPMNIKVTAGSIVTLVSWSSSSIVTYAFNFLLEWSTQGTFYVFGAV 441
Query: 362 CAFTVAFVSLWVPETKGRSLEEIQFS 387
+ F+ L VPETKG SLEEIQ S
Sbjct: 442 GGLALLFIWLLVPETKGLSLEEIQAS 467
|
|
| TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 158/387 (40%), Positives = 233/387 (60%)
Query: 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 61
VGA+ SGQ+A +GR+ +L + GWL I+F+K+ +L +GR+ G GVG+ISY V
Sbjct: 82 VGALFSGQLAVILGRRRTLWACDFFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVV 141
Query: 62 PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFF 121
PVYIAEI P+++RG+ + NQL G+ L Y G +NWRV+AV+G +PC L G+FF
Sbjct: 142 PVYIAEITPKHVRGAFTASNQLLQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFF 201
Query: 122 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR 181
IPESPRWLAK+ ++++ ESSL LRG DTD+S E EI+ + F+++ +K+
Sbjct: 202 IPESPRWLAKIRLSKEVESSLHRLRGKDTDVSGEAAEIQVMTKMLEEDSKSSFSDMFQKK 261
Query: 182 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSS-NVATFGLGVVQVVATGVNTW 240
Y L++GIGL+++QQLSG +G+ +YS+ IF AG S FG+ V+ G+
Sbjct: 262 YRRTLVVGIGLMLIQQLSGASGITYYSNAIFRKAGFSERLGSMIFGVFVIPKALVGLI-- 319
Query: 241 LMDKAGRRXXXXXXXXGMXXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISF 300
L+D+ GRR GM + + + ++ I V ++ F
Sbjct: 320 LVDRWGRRPLLLASAVGMSIGSLLIGVSFTLQ----QMNVLPELIPIFVFVNILVYFGCF 375
Query: 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360
+ G+G +PWVIMSEI P+NIK AG++ L +W W V+ NF+ +WS+ GTF I+
Sbjct: 376 AFGIGGLPWVIMSEIFPINIKVSAGTIVALTSWTSGWFVSYAFNFMFEWSAQGTFYIFAA 435
Query: 361 VCAFTVAFVSLWVPETKGRSLEEIQFS 387
V + F+ + VPETKG+SLEE+Q S
Sbjct: 436 VGGMSFIFIWMLVPETKGQSLEELQAS 462
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93YP9 | ERDL4_ARATH | No assigned EC number | 0.7969 | 1.0 | 0.7971 | yes | no |
| O52733 | XYLT_LACBR | No assigned EC number | 0.3291 | 0.9717 | 0.8271 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 389 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 9e-89 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-72 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 5e-56 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 7e-22 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 3e-12 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 9e-09 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-07 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 1e-06 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 1e-04 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-04 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 0.001 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 274 bits (704), Expect = 9e-89
Identities = 151/395 (38%), Positives = 234/395 (59%), Gaps = 18/395 (4%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF--LFMGRLLEGFGVGVIS 58
++G++ +G++ + GRK SL+I V +IG L+ F+K SF L +GR++ G GVG IS
Sbjct: 60 LIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGIS 119
Query: 59 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-------WRVLAVLGVLP 111
VP+YI+EIAP+ +RG+LGS+ QL +T GI++A ++GL +N WR+ L +P
Sbjct: 120 VLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVP 179
Query: 112 CTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTA 171
LL+ GL F+PESPRWL G E+ + L LRG D+ E+ E K S+ S
Sbjct: 180 AILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEK 238
Query: 172 IRFAELKRKR-YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVV 230
+ EL R + L++G+ L + QQL+GIN + +YS IF G+S S + T +GVV
Sbjct: 239 ASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVV 298
Query: 231 QVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSL 290
V T + +L+D+ GRR LLL+ ++GMA F ++ VA GI+++
Sbjct: 299 NFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGV-------AKSKGAGIVAI 351
Query: 291 VGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWS 350
V ++ + F+LG G +PWVI+SE+ P+ ++ A ++AT ANWL ++++ +
Sbjct: 352 VFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAI 411
Query: 351 SGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 385
G FL++ + + FV +VPETKGR+LEEI
Sbjct: 412 GGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 2e-72
Identities = 138/402 (34%), Positives = 224/402 (55%), Gaps = 23/402 (5%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF---LFMGRLLEGFGVGVI 57
+GA+ +G +++ GRK SL+I A+ +IG +++ + + L +GR+L G GVG+
Sbjct: 85 FIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIA 144
Query: 58 SYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-------VNWRVLAVLGVL 110
S VP+Y++EIAP+ +RG+L S+ QL++T GI++AY G + WR+ L ++
Sbjct: 145 SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI 204
Query: 111 PCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRT 170
P LL GLFF+PESPRWL G E+ SL LRG + ++E++ S
Sbjct: 205 PAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEK 264
Query: 171 AIRFAELKRKRYWF-----PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VA 223
L +G+ L QQ +GIN +++YS IF NAG+S+ + +
Sbjct: 265 RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLV 324
Query: 224 TFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYS 283
+ +G V T V +L+D+ GRR LLLI ++GMA F++ + S +
Sbjct: 325 SIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGA-----SFVTGSSK 379
Query: 284 ILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 343
G +++V ++ + F++G G +PWVI+SEI P++++ S+A ANWL ++IV
Sbjct: 380 SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLF 439
Query: 344 NFLLDWS-SGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEI 384
+L+ GG F+ +G + + FV ++PETKGR+LEEI
Sbjct: 440 PTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 5e-56
Identities = 126/418 (30%), Positives = 206/418 (49%), Gaps = 50/418 (11%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIG--------WLIISFSKDSSFLFMG----RL 48
++G G + GR+ SL IAAV I + S D++ R+
Sbjct: 69 IIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRI 128
Query: 49 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------- 99
+ G GVG+ S P+YIAEIAP ++RG L S NQ ++ G ++ Y + F+
Sbjct: 129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWL 188
Query: 100 ---NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156
WR + +P L + L+F+PE+PR+L G E E L+ + G +T + +
Sbjct: 189 NTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG-NTLATQAL 247
Query: 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG 216
EIK S+ + ++IG+ L V QQ GIN VL+Y+ IF G
Sbjct: 248 QEIKHSLDHGRKTGGKLLMFGV-----GVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLG 302
Query: 217 ISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGF 274
S+ + T +GV+ + T + +DK GR+ L +I + GMA F + AF
Sbjct: 303 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF----- 357
Query: 275 VSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNI--KSLAGSVAT--L 330
+ GI++L+ ++ V +F++ G + WV++SEI P I K+LA +VA +
Sbjct: 358 ------YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI 411
Query: 331 ANWLVSW---IVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 385
AN+ VSW ++ + + + +G ++ IYG + F+ +VPETKG++LEE++
Sbjct: 412 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 7e-22
Identities = 97/390 (24%), Positives = 174/390 (44%), Gaps = 33/390 (8%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
++G+ G +++ GRK L+++ + + ++ +FS + + + RLL G G+G I
Sbjct: 141 LLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQ 200
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-NWRVLAVLGVLPCTLLIPGL 119
V E P+ R +G++ Q+ ++G++L L+ F+ +WR L + LP L
Sbjct: 201 AVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLS 260
Query: 120 FFIPESPRWLAKMGMTEDFESSLQVLRGFD-TDISIEVNEIKRSVASSSRRTAIRFAELK 178
+F+PESPRWL G E+ LQ + + + EV + SS + F +L
Sbjct: 261 WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLF 320
Query: 179 RKRYWFPLMIGIGLLVLQQLSGINGVLFYS-----SNIFANAGISSSNVATFGLGVVQVV 233
R + L L L +Y N+ N + ++ GL V++
Sbjct: 321 RTPN-----LRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYL---DLFISGL--VELP 370
Query: 234 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGL 293
A + L+D+ GRR MAAS L VA L FV D F L+++G
Sbjct: 371 AKLITLLLIDRLGRRY-------TMAASLLLAGVALLLLLFVPVDLYFLRT--ALAVLGK 421
Query: 294 VTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGG 353
+ +F + ++ +E+ P +++L V + + S I++ +L +
Sbjct: 422 FGITSAFQ-----MVYLYTAELYPTVVRNLGVGVCSTMARVGS-IISPFLVYLGEKWLFL 475
Query: 354 TFLIYGIVCAFTVAFVSLWVPETKGRSLEE 383
+++G A ++L++PETKG L E
Sbjct: 476 PLVLFG-GLALLAGILTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 3e-12
Identities = 47/150 (31%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
MVGA G +A+ +GRK L+I N SF + F RLL GFG+G
Sbjct: 216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPI 275
Query: 61 VPVYIAEIAPQNMRGS----------LGSVNQLSVTIGIMLAYLLGL-------FVNWRV 103
V Y AE Q RG +G + ++ I+ Y F +WRV
Sbjct: 276 VFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV 335
Query: 104 LAVLGVLPCTLLIPGLFFIPESPRWLAKMG 133
++ PC I L F+PESPR+ + G
Sbjct: 336 FVIVCAFPCVFAIGALTFMPESPRFFLENG 365
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 9e-09
Identities = 85/388 (21%), Positives = 154/388 (39%), Gaps = 68/388 (17%)
Query: 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII----SFSKDSSF----LFMGRLLEGFG 53
+GAI G + IGRK +L+I + IG L+I S++ + L + RL++GF
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 54 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCT 113
+G +Y+AE AP RG GS Q+ +G++LA L L +++ +L +L
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY-LLGDDALLEWG 168
Query: 114 LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR 173
IP L S++ VL G ++E + ++
Sbjct: 169 WRIPFLV-------------------SAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGP 209
Query: 174 FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA------NAGISSSNV--ATF 225
AE K + P ++G+GL++ FY + G+S+++
Sbjct: 210 IAETLTK-HRKPFLLGLGLVIATT------TTFYLITTYLPTYLTQTLGLSANSALLVLM 262
Query: 226 GLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSIL 285
++ + ++ L D+ GRR +L+I + A + +A G S
Sbjct: 263 LSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSG---------SFT 313
Query: 286 GILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIK----SLAGSVATL-----ANWLVS 336
LV + ++ G + E+ P ++ SLA ++A A ++ +
Sbjct: 314 LFFFLVLGMALIGGMYTGPMGS---FLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA 370
Query: 337 WIVTMTANFLLDWSSGGTFLIYGIVCAF 364
+V MT DW + G +L +
Sbjct: 371 ALVAMTG----DWYAIGYYLAALALIGL 394
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 62/281 (22%), Positives = 112/281 (39%), Gaps = 21/281 (7%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
GA+ G +A+ IGR+ L+ + + + L+ + + + + L + R L G G+G +
Sbjct: 66 AFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN 125
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL-AVLGVLPCTLL 115
+ ++E AP+ RG+ + IG + L ++ WR L V G+ P LL
Sbjct: 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185
Query: 116 IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR-- 173
+ + F+PES +L V R + E + ++ +
Sbjct: 186 LLLMRFLPESIDFLVSKR-------PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRS 238
Query: 174 -FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQV 232
F L + + + + + LL L G+ + + + G S S AT G
Sbjct: 239 VFKALFQGKTAR-ITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFG 297
Query: 233 VATG--VNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFL 271
G + WL D+ G R+ L+ + + F V V L
Sbjct: 298 GVIGSIIFGWLADRLGPRVTALLL---LLGAVFAVLVGSTL 335
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
+G++ +G +++ GR+ L++ + +G L+++F+ L +GR L G G G +
Sbjct: 48 ALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPA 107
Query: 61 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 116
IAE P RG + +G +L LLG + WR L ++ + LL
Sbjct: 108 AAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA 167
Query: 117 PGLFFIP 123
L F+
Sbjct: 168 LLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 32/145 (22%)
Query: 2 VGAIASGQIAEYIGRK------------GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 49
+GAI G + +GR+ G+L+IA VP G+ I + L GRLL
Sbjct: 71 LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVP---GYATIGLAAPLLVLL-GRLL 126
Query: 50 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN--------- 100
+GF GV V VY+AEIA +G S S + ++ A LLG +N
Sbjct: 127 QGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMA 186
Query: 101 ---WRVLAVLGVLPCTLLIPGLFFI 122
WR+ ++G C L++P +F I
Sbjct: 187 EWGWRIPFLIG---C-LIVPFIFLI 207
|
Length = 434 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 61
GA+ G + GR+ ++ + V G L F+ +F+ RL+ G G+G +
Sbjct: 62 FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121
Query: 62 PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLL 115
Y+ E P+++R + +G ++A + V WR L + +LP
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181
Query: 116 IPGLFFIPESPRWLAK 131
+ IPE+ W K
Sbjct: 182 LWLRKNIPEAEDWKEK 197
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 15/157 (9%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF--LFMGRLLEGFGVGVIS 58
+ GA+ G++A+ IGRK L+++ + G ++ ++ F L + RLL G G+G
Sbjct: 64 LPGALLGGRLADRIGRKRILIVSVA--LFGLFSLATAQAWDFPSLLVARLLTGVGLGG-- 119
Query: 59 YTVPVYIA---EIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----VNWRVLAVLGVLP 111
+P IA E +RG+ S+ V G LA ++G+ WR + +G +
Sbjct: 120 -ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVG 178
Query: 112 CTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRG 147
LL+P L ++PES + G + L+ L G
Sbjct: 179 PLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFG 215
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 18/196 (9%)
Query: 182 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGL---GVVQVVATGVN 238
+ L++ + L G G+L Y S+ A L G+ ++ +
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 239 TWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVI 298
L D+ GRR LLL+ +AA L+ S+ +L + L+ +
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAP------------SLALLLVALLLLGFGL 279
Query: 299 SFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIY 358
F+ SE+ P + A + L + + A LLD G +
Sbjct: 280 GFAFPALLTLA---SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLI 336
Query: 359 GIVCAFTVAFVSLWVP 374
A A + L +P
Sbjct: 337 LAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Query: 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 60
++ + SG + + GRK L++ ++ + + S + + L + R L+GFG
Sbjct: 12 LIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVA 71
Query: 61 VPVYIAEIAPQNMR----GSLGSVNQLSVTIGIMLAYLLGLFVNWRVL-AVLGVLPCTLL 115
IA+I P R G + + L +G L +L F+ WR L +L
Sbjct: 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAF 131
Query: 116 IPGLFFIPES 125
I F +PE+
Sbjct: 132 ILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 3 GAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 62
G + G + + GR+ +++I+ V +G L F+ LF+ RL+ G G+ +
Sbjct: 71 GGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSA 130
Query: 63 VYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 118
Y+ E P+++R +IG ++A + V WR L +G+LP +
Sbjct: 131 TYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWL 190
Query: 119 LFFIPESPRWLAKMGMTEDFESSLQVL 145
+PE+ W K + + +L
Sbjct: 191 RKNLPEAEDWKEKHAGKAPVRTMVDIL 217
|
Length = 496 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 389 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.98 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.98 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.96 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.96 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.96 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.95 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.95 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.95 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.94 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.94 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.94 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.94 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.94 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.94 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.94 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.94 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.94 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.93 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.93 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.93 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.92 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.92 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.92 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.92 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.91 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.91 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.91 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.89 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.88 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.87 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.87 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.87 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.86 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.85 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.85 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.84 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.84 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.83 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.83 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.82 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.81 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.81 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.79 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.77 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.77 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.77 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.76 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.74 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.74 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.74 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.73 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.66 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.63 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.59 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.58 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.57 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.54 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.5 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.45 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.45 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.42 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.41 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.41 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.38 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.38 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.37 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.37 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.37 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.36 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.34 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.34 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.34 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.32 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.32 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.31 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.31 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.3 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.3 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.3 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.3 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.3 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.29 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.29 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.29 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.28 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.27 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.27 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.27 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.26 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.26 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.25 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.25 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.25 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.25 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.25 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.25 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.24 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.23 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.23 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.23 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.23 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.22 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.21 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.2 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.2 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.2 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.18 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.18 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.17 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.17 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.17 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.16 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.16 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.14 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.13 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.13 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.12 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.11 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.11 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.11 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.09 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.08 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.08 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.07 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.07 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.07 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.07 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.07 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.06 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.05 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.04 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.0 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.0 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.99 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.99 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.96 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.93 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.92 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.91 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.91 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.9 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.89 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.88 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.86 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.84 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.83 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.8 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.77 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.73 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.73 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.73 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.72 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.7 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.68 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.67 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.67 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.66 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.65 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.6 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.57 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.56 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.54 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.53 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.47 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.45 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.45 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.44 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.43 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.43 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.42 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.39 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.38 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.37 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.32 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.24 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.24 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.24 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.21 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.19 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.15 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.14 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.14 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.12 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.1 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.1 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.06 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.05 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.04 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.93 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.85 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.82 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.79 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.68 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.65 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.64 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.57 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.44 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.39 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.37 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.26 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.16 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.69 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.66 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.53 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.37 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.18 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.15 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.85 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.51 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.27 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.11 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.04 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.02 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 94.56 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 94.28 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.28 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 94.06 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.84 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 92.28 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.64 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 91.46 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 91.28 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 88.63 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 88.28 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 86.37 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 84.51 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 82.2 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=314.13 Aligned_cols=382 Identities=35% Similarity=0.609 Sum_probs=327.5
Q ss_pred CchhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc---cchhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 1 lig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
++|+++.|+++||+|||..+.++.++..++.+++.++ +++.+++++|++.|+..|........++.|..|++.||..
T Consensus 74 ~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~ 153 (485)
T KOG0569|consen 74 MIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGAL 153 (485)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHH
Confidence 3689999999999999999999999888888877765 7889999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcccc------chHHHHHhhhHHHHHHHHHHhcccCCchhhHh-cCChhHHHHHHHHHhcCCc
Q 016431 78 GSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK-MGMTEDFESSLQVLRGFDT 150 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~ 150 (389)
....+.+..+|..++..++.-- .|++.+....+++++..+...++||||||+.. +++++++++.+++.++.++
T Consensus 154 g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~ 233 (485)
T KOG0569|consen 154 GTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKED 233 (485)
T ss_pred HHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCc
Confidence 9999999999999997666443 69999999999999999999999999999988 8999999999999998875
Q ss_pred chhHHHHHHHHHhh-hccccccchHHHHhhcccch-hHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHH
Q 016431 151 DISIEVNEIKRSVA-SSSRRTAIRFAELKRKRYWF-PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFG 226 (389)
Q Consensus 151 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 226 (389)
++.......++.++ +..+++..+++++++++..| ...+.+.+....++++.+.+.+|...++++.|++... .....
T Consensus 234 ~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~ 313 (485)
T KOG0569|consen 234 VEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLG 313 (485)
T ss_pred chhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44433333332222 23334667888888876555 4667777888889999999999999999999998775 77777
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeeccccc
Q 016431 227 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGA 306 (389)
Q Consensus 227 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (389)
.+....+.++++.++.||+|||+.++.+..++.+..+++.+.....+... .+..+..+...+.+...++.+.+|
T Consensus 314 ~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~------~~~~y~~i~~~~~~~~~f~~G~gp 387 (485)
T KOG0569|consen 314 IGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG------SWLSYLCIAAIFLFIISFAIGPGP 387 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHhhhcCCCc
Confidence 88999999999999999999999999999999999888887766654411 244455667777888889999999
Q ss_pred chhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHhh
Q 016431 307 IPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQF 386 (389)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (389)
+.+-+.+|++|++.|+.+.++....+.+..++-...+..+.+.-+...++++.+.+.+..+..+..+||||+|+..|+.+
T Consensus 388 i~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~ 467 (485)
T KOG0569|consen 388 IPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIE 467 (485)
T ss_pred hhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999844448888999999999999999999999999988877
Q ss_pred hh
Q 016431 387 SF 388 (389)
Q Consensus 387 ~~ 388 (389)
++
T Consensus 468 ~~ 469 (485)
T KOG0569|consen 468 EL 469 (485)
T ss_pred HH
Confidence 64
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=302.53 Aligned_cols=370 Identities=20% Similarity=0.278 Sum_probs=259.2
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccc------hhHHHHHHHHhhhcccccccccceeeeeccCccccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRG 75 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 75 (389)
++++++|+++||+|||+++.++.++..+++++++++++ ++.+++.|+++|++.|...+....++.|++|+++|+
T Consensus 71 ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg 150 (502)
T TIGR00887 71 AGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRG 150 (502)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHH
Confidence 67899999999999999999999999999999998876 788999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHHHHHHHhcccc---------------------------chHHHHHhhhHHHHHHHHHHhcccCCchh
Q 016431 76 SLGSVNQLSVTIGIMLAYLLGLFV---------------------------NWRVLAVLGVLPCTLLIPGLFFIPESPRW 128 (389)
Q Consensus 76 ~~~~~~~~~~~lG~~l~~~i~~~~---------------------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 128 (389)
+++++.+....+|.++++.++..+ +||++|.+.++++++.++..+++||||+|
T Consensus 151 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~ 230 (502)
T TIGR00887 151 AMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRY 230 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999988887765321 69999999888888888888899999999
Q ss_pred hHhcCChh-HHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhccc---chhHHHHHHHHHHHhhcChhHH
Q 016431 129 LAKMGMTE-DFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRY---WFPLMIGIGLLVLQQLSGINGV 204 (389)
Q Consensus 129 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 204 (389)
+..+++.+ ++.+...+....+.+.+.+ +.++ .+++++..+.+++++++++. .++..+......+.....++..
T Consensus 231 l~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 307 (502)
T TIGR00887 231 TADVAKDVEQAASDMSAVLQVKIEAEPD--EVEK-ASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGV 307 (502)
T ss_pred HHHhCcchHHHHHHHHHHhccccccCcc--cccc-hhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 98887764 3555555544322111110 0000 00011112235667765321 2122222222222222223455
Q ss_pred HHHHHHHHhhcCCCCcc--H------------HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHh
Q 016431 205 LFYSSNIFANAGISSSN--V------------ATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFF 270 (389)
Q Consensus 205 ~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (389)
..+.|.++++.|.+... . ......++.+++.++.+++.||+|||+.+..+..+..++..++.....
T Consensus 308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~ 387 (502)
T TIGR00887 308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN 387 (502)
T ss_pred ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888777775431 0 122334566778899999999999999988887777776665554321
Q ss_pred hcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhc
Q 016431 271 LEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWS 350 (389)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 350 (389)
... ......... .....++.+..++.+.+..|.+|++.|+++.|+.+..+.++++++|.+.+.+.+..
T Consensus 388 ~~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 455 (502)
T TIGR00887 388 HLS----------THGFLAIYV--LAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG 455 (502)
T ss_pred hcc----------hhHHHHHHH--HHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence 100 001111111 11112234455677788999999999999999999999999999999999998732
Q ss_pred -----------cchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHhhh
Q 016431 351 -----------SGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFS 387 (389)
Q Consensus 351 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (389)
....++++++++.+..+ ..+++||+++++.+|+++|
T Consensus 456 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 456 DPTKGYPTGIWMGHVLEIFALFMFLGIL-FTLLIPETKGKSLEELSGE 502 (502)
T ss_pred cccccccccccchHHHHHHHHHHHHHHH-HheEeccCCCCCHHhhhCC
Confidence 13456667666665544 4567799999999988765
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=291.45 Aligned_cols=384 Identities=39% Similarity=0.676 Sum_probs=318.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+|++++|+++|++|||+.++++.+.+.++.+++++++|+++++++|+++|+|.|....+...+++|..|++.||...+..
T Consensus 104 ~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~ 183 (513)
T KOG0254|consen 104 VGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLY 183 (513)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCC-cchhHH
Q 016431 82 QLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD-TDISIE 155 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 155 (389)
+....+|..++..++... +||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++++.+ .+.+.+
T Consensus 184 ~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~ 263 (513)
T KOG0254|consen 184 QLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVE 263 (513)
T ss_pred HHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHH
Confidence 999999999998888777 59999999999999887778899999999999999999999999998843 333333
Q ss_pred HHHHHHHh--hhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCc-cHHHHHHHHHHH
Q 016431 156 VNEIKRSV--ASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSS-NVATFGLGVVQV 232 (389)
Q Consensus 156 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 232 (389)
.+..+... +......+..+++++++...++..+...+..+.+.++.+...+|.+.+++..+.+.. .......++..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~ 343 (513)
T KOG0254|consen 264 LELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNF 343 (513)
T ss_pred HHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 33333111 111112222466677766777788899999999999999999999999999888766 566677788888
Q ss_pred HHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhh
Q 016431 233 VATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 312 (389)
Q Consensus 233 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
++..++..+.||+|||+.++.+...+.++.++++........... ......+..+....++...++.+..|+.+.+.
T Consensus 344 ~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~ 420 (513)
T KOG0254|consen 344 LGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN---SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIV 420 (513)
T ss_pred HHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC---cccchhHHHHHHHHHHHHHHhcccccchhhhh
Confidence 999999999999999999999999999999988877655433111 11223344555556666677888889999999
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhcc-chhhHHHHHHHHHHHH-HHHhhcccCCCCCHHHHhhhh
Q 016431 313 SEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSS-GGTFLIYGIVCAFTVA-FVSLWVPETKGRSLEEIQFSF 388 (389)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 388 (389)
+|.+|.+.|+.+.++....+.+...+-........+... ...+..++.++.+... ..+++.||+|+++.+|+++.+
T Consensus 421 sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~ 498 (513)
T KOG0254|consen 421 SEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELF 498 (513)
T ss_pred hccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence 999999999999999999999988888777766666443 6677777777777777 788899999999999998754
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=300.30 Aligned_cols=362 Identities=23% Similarity=0.264 Sum_probs=265.9
Q ss_pred CchhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhh
Q 016431 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 80 (389)
Q Consensus 1 lig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 80 (389)
++|++++|+++||+|||+++++++++.++++++++++++++.++++|++.|++.++..+...+++.|++|+++|++.+++
T Consensus 216 iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~ 295 (742)
T TIGR01299 216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSW 295 (742)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcccc-----------------chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHH
Q 016431 81 NQLSVTIGIMLAYLLGLFV-----------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 143 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~~-----------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~ 143 (389)
..+++.+|.++++.++..+ +||+.+++.++++++.++..+++||+|+|+..+++.+++.+.++
T Consensus 296 ~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~ 375 (742)
T TIGR01299 296 LCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILK 375 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHH
Confidence 9999999999888754221 69999999888888888888899999999999999999999999
Q ss_pred HHhcCCcch----hHHH--HHHHHH--h----h--hcccc---------------ccchHHHHhhcccchhHHHHHHHHH
Q 016431 144 VLRGFDTDI----SIEV--NEIKRS--V----A--SSSRR---------------TAIRFAELKRKRYWFPLMIGIGLLV 194 (389)
Q Consensus 144 ~~~~~~~~~----~~~~--~~~~~~--~----~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (389)
++.+.+... .... +..+.. . + ++... ....++++++++..+.. +...+.+
T Consensus 376 ~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~t-l~l~~~w 454 (742)
T TIGR01299 376 LIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREIT-IKLMGVW 454 (742)
T ss_pred HHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHH-HHHHHHH
Confidence 987765321 1100 000000 0 0 00000 00134556665554444 4444445
Q ss_pred HHhhcChhHHHHHHHHHHhhc------------------------------------------CC-----C---------
Q 016431 195 LQQLSGINGVLFYSSNIFANA------------------------------------------GI-----S--------- 218 (389)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~-----~--------- 218 (389)
+.....++.+..|.|.++++. |+ +
T Consensus 455 f~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (742)
T TIGR01299 455 FTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEEC 534 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccccccccc
Confidence 555556888888888764331 00 0
Q ss_pred ------C------------------------------------------------c-------cHHHHHHHHHHHHHHHH
Q 016431 219 ------S------------------------------------------------S-------NVATFGLGVVQVVATGV 237 (389)
Q Consensus 219 ------~------------------------------------------------~-------~~~~~~~~~~~~~~~~~ 237 (389)
. . .....+..++.+++.++
T Consensus 535 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il 614 (742)
T TIGR01299 535 TFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIV 614 (742)
T ss_pred ceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 01234456888999999
Q ss_pred HHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccc
Q 016431 238 NTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILP 317 (389)
Q Consensus 238 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (389)
.++++||+|||+++..+.++.+++.+++++.. .....+...++ ..++..+..+..+++++|.+|
T Consensus 615 ~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~---------------s~~~ll~~~~l-~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 615 SALLMDKIGRLRMLAGSMVLSCISCFFLSFGN---------------SESAMIALLCL-FGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc---------------cHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999888888887776665321 00111111111 122223345667799999999
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 016431 318 VNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRS 380 (389)
Q Consensus 318 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (389)
++.|++++|+.+....+|++++|.+.+.+.+.....++++.+++.++. .++..++||++++.
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~-~ll~~~LPET~~~~ 740 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACG-GLLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHhCCCCcccc
Confidence 999999999999999999999999999888865555666666665554 44455669888764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=288.24 Aligned_cols=370 Identities=33% Similarity=0.555 Sum_probs=262.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc------------cchhHHHHHHHHhhhcccccccccceeeeecc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS------------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 69 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 69 (389)
++++++|+++||+||||+++.+.+++.++.++++++ ++++.+++.|+++|++.|...+...++++|++
T Consensus 70 ~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~ 149 (479)
T PRK10077 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIA 149 (479)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhC
Confidence 688999999999999999999999999999888763 22467889999999999999999999999999
Q ss_pred CcccccchhhhhHHHHHHHHHHHHHhccc------------cchHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhH
Q 016431 70 PQNMRGSLGSVNQLSVTIGIMLAYLLGLF------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTED 137 (389)
Q Consensus 70 ~~~~r~~~~~~~~~~~~lG~~l~~~i~~~------------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~ 137 (389)
|+++|++++++.+.+..+|.++++.++.. .+||++|++.+++.++..+..+++||+|+++..+++.++
T Consensus 150 ~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~ 229 (479)
T PRK10077 150 PAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQ 229 (479)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHH
Confidence 99999999999999999999988776532 289999999888777776667789999999888888777
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCC
Q 016431 138 FESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGI 217 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (389)
+++..++..+.++.. ...++.++..+++.. ..+..+. ..............+....+++...++.|.+.++.|.
T Consensus 230 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~ 303 (479)
T PRK10077 230 AEGILRKIMGNTLAT-QALQEIKHSLDHGRK----TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA 303 (479)
T ss_pred HHHHHHHHcCChhHH-HHHHHHHHHHHHhhh----hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCC
Confidence 766666554332111 111111111000000 0001111 0111112222233333444455667788888888887
Q ss_pred CCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhh
Q 016431 218 SSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVT 295 (389)
Q Consensus 218 ~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (389)
+... ......++..+++.++.+++.||+|||+.+..+..+..++.+++........ ...........
T Consensus 304 ~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~-----------~~~~~~~~~~~ 372 (479)
T PRK10077 304 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-----------PGIVALLSMLF 372 (479)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc-----------ccHHHHHHHHH
Confidence 6553 4445567788899999999999999999999988888887776654321110 00111122222
Q ss_pred eeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHh------h-hccchhhHHHHHHHHHHHHH
Q 016431 296 VVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL------D-WSSGGTFLIYGIVCAFTVAF 368 (389)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~------~-~~~~~~~~~~~~~~~~~~~~ 368 (389)
+..++.....|..+.++.|.+|+++|+++.|+.+..++++..+++.+.+.+. + .+....+.+.++++.+..++
T Consensus 373 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (479)
T PRK10077 373 YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF 452 (479)
T ss_pred HHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHH
Confidence 2233333445677799999999999999999999999999999988877655 2 44555677777777777677
Q ss_pred HHhhcccCCCCCHHHHhhhh
Q 016431 369 VSLWVPETKGRSLEEIQFSF 388 (389)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~ 388 (389)
.+.+.||+|+++.+|.++++
T Consensus 453 ~~~~~~e~~~~~~~~~~~~~ 472 (479)
T PRK10077 453 MWKFVPETKGKTLEEMEALW 472 (479)
T ss_pred HHhccccCCCCCHHHHHHHH
Confidence 77778999999988888765
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=289.06 Aligned_cols=361 Identities=23% Similarity=0.311 Sum_probs=263.0
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+|+++.|+++||+|||++++++.++.+++.+++++++|++.+++.|++.|++.+...+...+++.|++|+++|+++.++.
T Consensus 142 ~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~ 221 (505)
T TIGR00898 142 LGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLI 221 (505)
T ss_pred HHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc-chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHH-HHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV-NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIE-VNEI 159 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~-~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 159 (389)
..+..+|.++++.++..+ +||+.|++.+++.++..+..+++||+|+|+..+++.+++.+.+++..+.+.....+ ..+.
T Consensus 222 ~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 301 (505)
T TIGR00898 222 QVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSL 301 (505)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhh
Confidence 999999999999998877 89999999998888877777889999999999999998888877766544322111 1111
Q ss_pred HHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHH
Q 016431 160 KRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNT 239 (389)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 239 (389)
+.+++.+.++++.+.+++++++..+...+......+.....++.. +....+.+.+ ........++..+++.++.+
T Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~ 376 (505)
T TIGR00898 302 SLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGL----VLDLGNLGGN-IYLDLFISGLVELPAKLITL 376 (505)
T ss_pred hhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----hccccccCCC-hHHHHHHHHHHHHHHHHHHH
Confidence 111111111223467788887776665555544443322112222 2222223332 22444556788889999999
Q ss_pred HHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccc
Q 016431 240 WLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN 319 (389)
Q Consensus 240 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
++.||+|||+.+..+..+.+++.+++.... ++. ......... ..........+..+.+..|.+|++
T Consensus 377 ~l~dr~grr~~~~~~~~~~~~~~l~~~~~~-------~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 377 LLIDRLGRRYTMAASLLLAGVALLLLLFVP-------VDL------YFLRTALAV-LGKFGITSAFQMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-------CCc------hHHHHHHHH-HHHHHHHHHHHHHHHHhcccccHH
Confidence 999999999999888877777666554320 000 011111111 111112223355668899999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 016431 320 IKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEE 383 (389)
Q Consensus 320 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (389)
.|+++.|+.+....+|+.++|.+.+ +.+.+...++.++++...+.+++ ..++||+++++.+|
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~~l~~ 504 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGIL-TLFLPETKGVPLPE 504 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHH-HHcCcCCCCCCCCC
Confidence 9999999999999999999999999 66666667777777766665444 45678988876543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=327.18 Aligned_cols=380 Identities=39% Similarity=0.641 Sum_probs=297.4
Q ss_pred CchhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc---chhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 1 lig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
++|+++.|.++||+|||+.+..+.++..+++++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++.
T Consensus 60 ~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~ 139 (451)
T PF00083_consen 60 IVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFL 139 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 47899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcccc----c---hHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCc
Q 016431 78 GSVNQLSVTIGIMLAYLLGLFV----N---WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDT 150 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~----~---wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 150 (389)
.++.+.++.+|..++..++... + ||..+.+.++++++..+...++||||+|+..++|.+|+++.+++.++.+.
T Consensus 140 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~ 219 (451)
T PF00083_consen 140 SSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEI 219 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccc
Confidence 9999999999999888777554 4 99999999999988888888999999999999999999999888654422
Q ss_pred chhHHHHHHHHHhhhccccccchHHHHhhccc-chhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCccHHHHHHHH
Q 016431 151 DISIEVNEIKRSVASSSRRTAIRFAELKRKRY-WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGV 229 (389)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (389)
+.++. ++..++.++. ++.+.+++++++++. .++......+.......+.+...+|.+.+.++.+.+..........+
T Consensus 220 ~~~~~-~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 297 (451)
T PF00083_consen 220 EDEEI-EEIKAEKKES-QESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGL 297 (451)
T ss_pred ccccc-cccccccccc-cccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 22111 1111111111 111256677777654 44555556666666666667777888888888777666444555567
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchh
Q 016431 230 VQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 309 (389)
Q Consensus 230 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (389)
...++.+++.++.||+|||+.+..+...+.++...++........ .+ .......+.........+..+..+..+
T Consensus 298 ~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~i~~~~l~~~~~~~g~~~~~~ 371 (451)
T PF00083_consen 298 VNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVS--SS----SWWSILSIVFLALFFAFFSLGWGPLPW 371 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc--cc----cccccccceeeeecccccccccccccc
Confidence 777888888899999999999988888877776666411111100 00 011222333333444556667788888
Q ss_pred hhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh-ccchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHhhhh
Q 016431 310 VIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW-SSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 388 (389)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (389)
.+..|.+|++.|+++.|+....+++++.++|.+...+.+. +....+.++++++.+..++.++++||+++++.+|++++|
T Consensus 372 ~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 372 IYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 9999999999999999999999999999999999888874 446778888888888888888999999999999999986
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=272.48 Aligned_cols=377 Identities=36% Similarity=0.644 Sum_probs=266.4
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc---chhHHHHHHHHhhhcccccccccceeeeeccCcccccchh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLG 78 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 78 (389)
++++++|+++||+|||++++.+.+++.++.+++.+.+ +++.+++.|+++|++.+...+...+++.|++|+++|++++
T Consensus 86 i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 165 (481)
T TIGR00879 86 IGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALT 165 (481)
T ss_pred HHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhh
Confidence 6789999999999999999999999999999996654 4558999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhc---ccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcc
Q 016431 79 SVNQLSVTIGIMLAYLLG---LFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTD 151 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~---~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
++.+.+.++|..+++.++ ... +||+.|++.++..++..+..+++||+|++...+++.++.++..++..+.+++
T Consensus 166 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (481)
T TIGR00879 166 SLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGE 245 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCC
Confidence 999999999999999998 443 8999999977777777777788999998877777666655555444333222
Q ss_pred hhHHHHHH---HHHhhhccccccchHHHHhhcc--cchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHH
Q 016431 152 ISIEVNEI---KRSVASSSRRTAIRFAELKRKR--YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VAT 224 (389)
Q Consensus 152 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 224 (389)
.....+.. +...+.+.+.....+++.++.. ..++..+...+..+..........++.+.+.++.|.+... ...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 325 (481)
T TIGR00879 246 DKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVS 325 (481)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHH
Confidence 21111100 0011111111111233443322 1344444455555555555566778888888888887644 455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeeccc
Q 016431 225 FGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGV 304 (389)
Q Consensus 225 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (389)
....+..+++.++.+++.||++||+.+..+..+..++.+++.......... .+ . ......+.....+..+++.+.
T Consensus 326 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~--~~~~~~~~~~~~~~~~~~~~~ 400 (481)
T TIGR00879 326 IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG-SS--K--SSGNVAIVFILLFIAFFAMGW 400 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC-cc--c--chhHHHHHHHHHHHHHHHccc
Confidence 556788889999999999999999998888777777666655322211110 00 0 001111222222333344455
Q ss_pred ccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 016431 305 GAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEE 383 (389)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (389)
.+....+..|.+|++.|+++.|+.+...+++.+++|.+.+.+.+ .+....+++.++++.+..++..++.||+++++.+|
T Consensus 401 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 401 GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 56677888999999999999999999999999999999999888 46666677777777777776677778877766543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=270.66 Aligned_cols=339 Identities=18% Similarity=0.233 Sum_probs=221.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhH--------HHHHHHHhhhcccccccccceeeeeccCccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF--------LFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 73 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 73 (389)
+|+++.|+++||+|||+++.+++++++++++++++++|++. +++.|+++|++.|+.++...+++.|++|+++
T Consensus 72 ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~ 151 (490)
T PRK10642 72 LGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK 151 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC
Confidence 68999999999999999999999999999999999999875 8899999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHHhcc------------ccchHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHH
Q 016431 74 RGSLGSVNQLSVTIGIMLAYLLGL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 141 (389)
Q Consensus 74 r~~~~~~~~~~~~lG~~l~~~i~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~ 141 (389)
|+++.++...+..+|..+++.+.. ..|||++|++.++++++.++....+||+|+|...+++.++..
T Consensus 152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~-- 229 (490)
T PRK10642 152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD-- 229 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc--
Confidence 999999999888888877764432 128999999988777766666677999998653322111100
Q ss_pred HHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCc
Q 016431 142 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSS 220 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 220 (389)
.+...++++.++++++++ +++......... +.....++....+.|.+++ ..|.+..
T Consensus 230 ---------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~g~s~~ 286 (490)
T PRK10642 230 ---------------------REGLQDGPKVSFKEIATK-HWRSLLTCIGLV-IATNVTYYMLLTYMPSYLSHNLHYSED 286 (490)
T ss_pred ---------------------cccccccccCCHHHHHHH-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 000001122345555553 223322222222 2222334556667787775 4576554
Q ss_pred c--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheee
Q 016431 221 N--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVI 298 (389)
Q Consensus 221 ~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (389)
. .......++.+++.++.|+++||+|||+.+..+..+..+....+....... .......+..+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~g~ 354 (490)
T PRK10642 287 HGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN------------VIGLIFAGLLMLAV 354 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC------------CHHHHHHHHHHHHH
Confidence 3 334445677888899999999999999987776654333222211111000 00111111111111
Q ss_pred eeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh-c-cchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 299 SFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW-S-SGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
..+ ...+....+..|.+|++.|+++.|+.+.....++.++|.+.+++.+. + ...++++..+.+ +..++..++.||+
T Consensus 355 ~~~-~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~-~i~~~~~~~~pes 432 (490)
T PRK10642 355 ILN-CFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA-VIGLITGVTMKET 432 (490)
T ss_pred HHH-HHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH-HHHHHHHHHhccc
Confidence 111 11223346778999999999999987666777788999999998873 3 233344333333 3334444556776
Q ss_pred CCC
Q 016431 377 KGR 379 (389)
Q Consensus 377 ~~~ 379 (389)
+++
T Consensus 433 ~~~ 435 (490)
T PRK10642 433 ANR 435 (490)
T ss_pred cCC
Confidence 543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=230.31 Aligned_cols=361 Identities=19% Similarity=0.229 Sum_probs=267.1
Q ss_pred CchhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhh
Q 016431 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 80 (389)
Q Consensus 1 lig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 80 (389)
++|+..+|.++|++|||+.+.+......+...+.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.
T Consensus 127 llga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~ 205 (528)
T KOG0253|consen 127 LVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVM 205 (528)
T ss_pred hhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhH
Confidence 46888999999999999999999999999999999999999999999999999999 89999999999999999887766
Q ss_pred hHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcch----
Q 016431 81 NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI---- 152 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~---- 152 (389)
. ..+.+|.+....++... ||||.......+..+.....+++|||||+...+++++++.+.++++.+.|...
T Consensus 206 ~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplg 284 (528)
T KOG0253|consen 206 S-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLG 284 (528)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcc
Confidence 6 88999999888777655 99999988888888888888899999999999999999999999988766422
Q ss_pred ----hHHHHHHH------HHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcC---C--
Q 016431 153 ----SIEVNEIK------RSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG---I-- 217 (389)
Q Consensus 153 ----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 217 (389)
+.+.++++ +...+..++......+++.++.++..++.....+...++ ++.........++..+ .
T Consensus 285 vl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~ 363 (528)
T KOG0253|consen 285 VLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYN 363 (528)
T ss_pred eeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccch
Confidence 11111111 111122233445566666655444444333333332222 3344333333333211 0
Q ss_pred ---------------C-Ccc-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCcc
Q 016431 218 ---------------S-SSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 280 (389)
Q Consensus 218 ---------------~-~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (389)
+ ... .-..+..+..++|.++.+++.||+|||+.+..++++.+++.+++.....-.
T Consensus 364 r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn-------- 435 (528)
T KOG0253|consen 364 RFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN-------- 435 (528)
T ss_pred hcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc--------
Confidence 0 011 335566788999999999999999999999999888888777665421100
Q ss_pred chhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHH
Q 016431 281 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 360 (389)
........+-++.. +...+.|.|..|.+|+..|+++.|.....+.+|+++.|.+. ...+.....+..++++
T Consensus 436 ---~~tvllf~arafis-----g~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~ 506 (528)
T KOG0253|consen 436 ---AYTVLLFTARAFIS-----GAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGA 506 (528)
T ss_pred ---hhHHHHHHHHHHHh-----chheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHH
Confidence 11112222222222 33345679999999999999999999999999999999999 5555667778889999
Q ss_pred HHHHHHHHHHhhcccCCCCCH
Q 016431 361 VCAFTVAFVSLWVPETKGRSL 381 (389)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~ 381 (389)
++++.++...++-.|+|+|..
T Consensus 507 ~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 507 LFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred HHHHHHHHheeeeeccCCCCC
Confidence 888888888887778988753
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=251.24 Aligned_cols=322 Identities=21% Similarity=0.235 Sum_probs=208.6
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchh--------HHHHHHHHhhhcccccccccceeeeeccCccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 73 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 73 (389)
+|++++|+++||+||||++..+.++++++++++++++++. .+++.|+++|++.|+.++...+++.|++|+++
T Consensus 78 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 6889999999999999999999999999999999999875 58899999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHHhcc------------ccchHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHH
Q 016431 74 RGSLGSVNQLSVTIGIMLAYLLGL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 141 (389)
Q Consensus 74 r~~~~~~~~~~~~lG~~l~~~i~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~ 141 (389)
|+++.++.+.+...|.++++.+.. ..|||++|++.++++++.......+||+|++..+
T Consensus 158 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~---------- 227 (432)
T PRK10406 158 KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR---------- 227 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh----------
Confidence 999999998888888887775432 2389999999888877766666667887642100
Q ss_pred HHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCc
Q 016431 142 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSS 220 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 220 (389)
+ + ++..+++++++++..+...+.. .......++....|.|.+++ +.|.+..
T Consensus 228 --------------------~-~----~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~lp~~l~~~~g~s~~ 279 (432)
T PRK10406 228 --------------------A-L----KEAGSLKGLWRNRRAFIMVLGF---TAAGSLCFYTFTTYMQKYLVNTAGMHAN 279 (432)
T ss_pred --------------------h-h----cccccHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 0 0 0112355566544322222211 11112224455667777665 4577654
Q ss_pred c--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheee
Q 016431 221 N--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVI 298 (389)
Q Consensus 221 ~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (389)
+ .......+...++.++.|+++||++||+.+.....+..+....+.... ... +. ...............
T Consensus 280 ~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~---~~----~~~~~~~~~~~~~~~ 350 (432)
T PRK10406 280 VASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL--QNV---SS----PYAAFGLVMCALLIV 350 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--HcC---Cc----HHHHHHHHHHHHHHH
Confidence 4 334444566678888999999999999877665544333222111100 000 00 000011111110111
Q ss_pred eeecccccchhhhhccccccchhhhhhhHHHHHHHH-HHHHHHHHhHHHhhhccchhhHHHHHHHHHHHHHHHhhc
Q 016431 299 SFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWL-VSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWV 373 (389)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (389)
....+..+.+.+|.+|++.|+++.|+.+...+. .+...|.+.+.+.+.+.+...+++.++..+.+.+...++
T Consensus 351 ---~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 351 ---SFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred ---HHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 111234457889999999999999999877665 355578888866445544444444444444444444443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=247.68 Aligned_cols=330 Identities=18% Similarity=0.198 Sum_probs=212.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchh--------HHHHHHHHhhhcccccccccceeeeeccCccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 73 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 73 (389)
+|+++.|+++||+|||+++..+.++++++++++++++|+. .+++.|+++|++.|+.++....++.|++|+++
T Consensus 79 ~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~ 158 (438)
T PRK09952 79 LGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK 158 (438)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC
Confidence 5778899999999999999999999999999999999987 58889999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHHhcc------------ccchHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHH
Q 016431 74 RGSLGSVNQLSVTIGIMLAYLLGL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 141 (389)
Q Consensus 74 r~~~~~~~~~~~~lG~~l~~~i~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~ 141 (389)
|++..+..+.+..+|.+++..+.. ..+||++|++.+++.++........||+|++...+++.++
T Consensus 159 rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~---- 234 (438)
T PRK09952 159 KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA---- 234 (438)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc----
Confidence 999999999999999988865543 2389999999888766655555567888764322111000
Q ss_pred HHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCc
Q 016431 142 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSS 220 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 220 (389)
.+++....+.++++++.+.... ... +......+....+.+.+.+ +.+.+..
T Consensus 235 -------------------------~~~~~~~~~~l~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~y~~~~~g~s~~ 286 (438)
T PRK09952 235 -------------------------AKKRIPVIEALLRHPGAFLKII--ALR-LCELLTMYIVTAFALNYSTQNLGLPRE 286 (438)
T ss_pred -------------------------ccccCCHHHHHHHchHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 0000011122333332222111 111 1111123344555665554 4566544
Q ss_pred c--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheee
Q 016431 221 N--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVI 298 (389)
Q Consensus 221 ~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (389)
. ......+...+++.++.|+++||++||+.+..+.++..++...+.......+ ..........+...
T Consensus 287 ~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~ 355 (438)
T PRK09952 287 LFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQS-----------IFWIVFFSIMLANI 355 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHH
Confidence 3 2233445667788899999999999999887776554443332221110000 01111111111111
Q ss_pred eeecccccchhhhhccccccchhhhhhhHHHHH-HHHHHHHHHHHhHHHhh-h-ccchhhHHHHHHHHHHHHHHHhhccc
Q 016431 299 SFSLGVGAIPWVIMSEILPVNIKSLAGSVATLA-NWLVSWIVTMTANFLLD-W-SSGGTFLIYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
+. ....+..+++..|.+|++.|+++.|+.+.. ..+++.++|.+.+++.+ . +.+.....+.+++.+.+.+..+..++
T Consensus 356 ~~-~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 434 (438)
T PRK09952 356 AH-DMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKD 434 (438)
T ss_pred HH-HHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccc
Confidence 11 122344568899999999999999997655 45899999999999988 3 22333333343444444444455554
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=249.97 Aligned_cols=364 Identities=20% Similarity=0.236 Sum_probs=262.6
Q ss_pred CchhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhh
Q 016431 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 80 (389)
Q Consensus 1 lig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 80 (389)
++|++++|+++||+|||++++.++++..++.++.++++|++.+++.|+++|++.++...+...++.|++++++|+.+..+
T Consensus 132 ~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~ 211 (521)
T KOG0255|consen 132 LVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL 211 (521)
T ss_pred HHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcccc--chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCC---cchhHH
Q 016431 81 NQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD---TDISIE 155 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~~--~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 155 (389)
......+..+++..++++ +||+.+++..++.++.++.+++.||+|+|+..+++.+++.+.+++..+.| .+....
T Consensus 212 -~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~ 290 (521)
T KOG0255|consen 212 -GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKEL 290 (521)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHH
Confidence 666677777777776666 89999999999999887777778899999999999999999999887654 222222
Q ss_pred HHHH--HHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHH
Q 016431 156 VNEI--KRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQV 232 (389)
Q Consensus 156 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 232 (389)
.... .+..+....+++..+.++++.+..+...+...+..+.. ...++...+. ..+++... ......+....
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~-----~~~y~gl~~~-~~~lg~~~~~~~~~~~~~~~ 364 (521)
T KOG0255|consen 291 LRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF-----SLVYYGLSLN-VSGLGGNIYLNFTLSGLVEL 364 (521)
T ss_pred HHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHH-----hHHHHhhhhh-hhhcCchHHHHHHHHHHHHh
Confidence 2111 11111122223355777777765444444444444221 2222222111 11222222 44444555777
Q ss_pred HHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhh
Q 016431 233 VATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 312 (389)
Q Consensus 233 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
......+...|+.|||.....+..+..++.+..++....... ........++... .+.+.. ..+.+.
T Consensus 365 p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~----~~~~~~-~~~~~~ 431 (521)
T KOG0255|consen 365 PAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG--------WLHWILPLLGKFF----IGSAFN-LIFLYS 431 (521)
T ss_pred hHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh--------HHHHHHHHHHHHH----HHHHHH-HHHHHH
Confidence 888888999999999999999998888888887764322110 0111122222222 122222 336999
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHH
Q 016431 313 SEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEI 384 (389)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (389)
.|++|+..|..+.+..+....++++++|.+.-..........+..++....+.+.+...++||++++...+.
T Consensus 432 ~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t 503 (521)
T KOG0255|consen 432 AELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGT 503 (521)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchh
Confidence 999999999999999999999999999999866655333334444566777777777789999998876543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=230.61 Aligned_cols=313 Identities=17% Similarity=0.176 Sum_probs=227.3
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++|+...+.||+.||++++..+.++.++++++++++||+.++++|++.|+..|..++...++..|..|+++|++++++.
T Consensus 63 i~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv 142 (394)
T COG2814 63 LGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALV 142 (394)
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHH-HHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
..+.+++.++|.+++.++ |||..|++.+..+++.+ ..+..+| |+.
T Consensus 143 ~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~---------------------------- 192 (394)
T COG2814 143 FTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSE---------------------------- 192 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc----------------------------
Confidence 999999999998888887 99999999999888875 4556688 210
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVA 234 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 234 (389)
.+++.+.+..+..+.++++..+..+....+.... .+..++|..|.+.+..|++... .....++++.++|
T Consensus 193 ------~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g---~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~G 263 (394)
T COG2814 193 ------ISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTG---HFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIG 263 (394)
T ss_pred ------CCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcc---hhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHH
Confidence 0011111222334556666544444444333332 2445555556666667777666 6777789999999
Q ss_pred HHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhcc
Q 016431 235 TGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 314 (389)
Q Consensus 235 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (389)
+.++|++.|| +.|+.+.....+..+.++.+.... ...........+ . +....|....+..+
T Consensus 264 n~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~--------------~~~~~~~~~~~~--w--g~a~~~~~~~~~~~ 324 (394)
T COG2814 264 NLLGGRLADR-GPRRALIAALLLLALALLALTFTG--------------ASPALALALLFL--W--GFAFSPALQGLQTR 324 (394)
T ss_pred HHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc--------------chHHHHHHHHHH--H--HHHhhhhhhHHHHH
Confidence 9999999999 888888777777777666655321 111222222222 2 22333333344444
Q ss_pred ccc--cchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHHHHHHhh
Q 016431 315 ILP--VNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLW 372 (389)
Q Consensus 315 ~~~--~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (389)
..+ ++.++.+.+++....++|..+|..++|.+.|..+.......+++..+.+......
T Consensus 325 ~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 325 LARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred hcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 433 5779999999999999999999999999999544444444444444444444433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=245.79 Aligned_cols=310 Identities=16% Similarity=0.150 Sum_probs=212.3
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++.++++++++++++++.+++.|+++|++.+...+....++.|++|+++|+++.++.
T Consensus 68 l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 147 (426)
T PRK12307 68 FGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFL 147 (426)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 157 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (389)
..+.++|.++++.+...+ +||+.|++..+..++........||++++..++.+. .+ +
T Consensus 148 ~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~-~------ 208 (426)
T PRK12307 148 VSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KG-K------ 208 (426)
T ss_pred HHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cc-c------
Confidence 999999999998877654 899999886554444333333356654322111000 00 0
Q ss_pred HHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHH
Q 016431 158 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVAT 235 (389)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 235 (389)
+.+...+.....+++.++++..+.......... ...........+.|.+.++.|.+... .......++.+++.
T Consensus 209 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~ 283 (426)
T PRK12307 209 ----HSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGN 283 (426)
T ss_pred ----ccccchhhhhHHHHHHHhhchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 000000111224556666665544333222222 22222233455677777777776544 44455678889999
Q ss_pred HHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheee-eeecccccchhhhhcc
Q 016431 236 GVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVI-SFSLGVGAIPWVIMSE 314 (389)
Q Consensus 236 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 314 (389)
++.+++.||++||+....+.++..+....+... ... . ... .....+.. ....+..+....++.|
T Consensus 284 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (426)
T PRK12307 284 IVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI---PQD---------N-YLL--LGACLFGLMATNVGVGGLVPKFLYD 348 (426)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH---ccc---------c-HHH--HHHHHHHHHHhcccHhHHHHHHHHH
Confidence 999999999999998877766655543333211 000 0 011 11111111 1112223344477889
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhc
Q 016431 315 ILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWS 350 (389)
Q Consensus 315 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 350 (389)
.+|++.|+++.|+.+....+++.++|.+.|++.+..
T Consensus 349 ~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 349 YFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred hCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999998843
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=232.64 Aligned_cols=346 Identities=15% Similarity=0.157 Sum_probs=237.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
++.++.|.++||.+.|+.+..++++.++.+++++++++.+.+.+..+++|..+|..+|.+...++.|+|++|||+..+++
T Consensus 79 ~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siW 158 (448)
T COG2271 79 VSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIW 158 (448)
T ss_pred HHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--ccc----chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhH
Q 016431 82 QLSVTIGIMLAYLLG--LFV----NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISI 154 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~--~~~----~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (389)
+++.++|..+.|++. +.+ +||..|++.++++++. ++.++..+|+|+..--.. .++
T Consensus 159 n~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~-ie~----------------- 220 (448)
T COG2271 159 NTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP-IEE----------------- 220 (448)
T ss_pred hhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-HHH-----------------
Confidence 999999999988888 555 8999999999887776 666777899885211100 000
Q ss_pred HHHHHHHHhhhccccccchHHHH-hhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHHHHH
Q 016431 155 EVNEIKRSVASSSRRTAIRFAEL-KRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVV 230 (389)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~ 230 (389)
..++..+..+++++++..+.+++ ++.-...+.++..++.....+..-+.+..|.|.++.+ .+++... .....+-.+
T Consensus 221 ~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~a 300 (448)
T COG2271 221 YRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVA 300 (448)
T ss_pred hhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 00000000011111111222222 2222222345555555555555577889999988765 4666554 666777899
Q ss_pred HHHHHHHHHHHHhhh--chhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccch
Q 016431 231 QVVATGVNTWLMDKA--GRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIP 308 (389)
Q Consensus 231 ~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (389)
+++|+++.|+++||+ |||....+.+.+.....++... ..+++ +.........++++ +-.+..-+.
T Consensus 301 gl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w------~~~~~-~~~l~~~~l~~iGf------~IyGPqmLi 367 (448)
T COG2271 301 GLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYW------LAPNG-SYLLDAILLFIIGF------LIYGPQMLI 367 (448)
T ss_pred hhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH------cCCCc-cHHHHHHHHHHHHH------HHhhHHHHH
Confidence 999999999999996 4555443333222222222111 11111 11111112222222 223333344
Q ss_pred hhhhccccccchhhhhhhHHHHHHHH-HHHHHHHHhHHHhhh-ccchhhHHHHHHHHHHHHHHHhhcccCCC
Q 016431 309 WVIMSEILPVNIKSLAGSVATLANWL-VSWIVTMTANFLLDW-SSGGTFLIYGIVCAFTVAFVSLWVPETKG 378 (389)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
-..+.|+.|++.-|++.|+...+.++ |...+....|++.|. ++...|.++.+.+.++.++.....+.+++
T Consensus 368 Gl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~~~~ 439 (448)
T COG2271 368 GLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNAEER 439 (448)
T ss_pred HHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhhcch
Confidence 57788999999999999999999999 999999999999884 66667777666666665555554444333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=246.35 Aligned_cols=341 Identities=14% Similarity=0.128 Sum_probs=218.9
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++.++.++.+++++++++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++.
T Consensus 73 ~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~ 152 (434)
T PRK11663 73 VSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIW 152 (434)
T ss_pred HHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+.+.++|..+++.+++.+ +||+.|++.+++.++. ++..+++||+|++.......++.+ +.
T Consensus 153 ~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~---- 217 (434)
T PRK11663 153 NTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-----------DA---- 217 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-----------cc----
Confidence 999999999999888776 9999999888766654 444556788775321111000000 00
Q ss_pred HHHHHHhhhccccccchHHH-----HhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAE-----LKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLG 228 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~ 228 (389)
. +. +++.++++.+.++ .++++..+.. .+...........+..+.|.+++ +.|.+..+ .......
T Consensus 218 ~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~ 289 (434)
T PRK11663 218 L--EL--AQQQEGAGLSRKEILTKYVLLNPYIWLL----SFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFE 289 (434)
T ss_pred c--cc--chhccccCCChhhhHHHHHhcChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 0 00 0000000111122 2333332222 22222222224455667777774 45776554 4555667
Q ss_pred HHHHHHHHHHHHHHhhh--chhHHH-HHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccc
Q 016431 229 VVQVVATGVNTWLMDKA--GRRLLL-LISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVG 305 (389)
Q Consensus 229 ~~~~~~~~~~g~l~d~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (389)
++.++++++.|++.||+ ++|+.. .............+... ... + . ..........+ .+..+..
T Consensus 290 ~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~-----~---~--~~~~~~~~~~g-~~~~~~~ 355 (434)
T PRK11663 290 LGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM---PFA-----S---Y--VMQAACFFTIG-FFVFGPQ 355 (434)
T ss_pred HHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc---ccc-----c---H--HHHHHHHHHHH-HHHhhHH
Confidence 88999999999999998 333332 22111111111111110 000 0 0 01111111111 1111112
Q ss_pred cchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCCCC
Q 016431 306 AIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGR 379 (389)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (389)
........|.+|++.|+++.|+.+...++|..++|.+.|++.| .+....+...+++.++.++......++++++
T Consensus 356 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 356 MLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 2233567899999999999999999999999999999999999 5555566666666666555555445544443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=242.69 Aligned_cols=321 Identities=20% Similarity=0.229 Sum_probs=219.2
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++..++.+++++++|++.+++.|++.|++.+...+...+++.|++|+++|++++++.
T Consensus 65 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 144 (406)
T PRK11551 65 PGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLM 144 (406)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHH-HHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+.+..+|..+++.++..+ +||+.|++.++..++.. +...++||+|++..++++.++.
T Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------ 206 (406)
T PRK11551 145 YCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR------------------ 206 (406)
T ss_pred HHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh------------------
Confidence 999999999999888655 89999998776655543 4455688887543221110000
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVA 234 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 234 (389)
+...+..++++..+.. .......+......+....+.|.+.++.|.+... .......++.+++
T Consensus 207 --------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~ 271 (406)
T PRK11551 207 --------------APVLRALFGEGRATAT-LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALG 271 (406)
T ss_pred --------------hhhHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHH
Confidence 0000111111111111 1111111111122345556778888777776555 5555667889999
Q ss_pred HHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhcc
Q 016431 235 TGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 314 (389)
Q Consensus 235 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (389)
.++.|++.||++||+.+..+.....++...+... . .............. ...+..+...++..|
T Consensus 272 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~ 335 (406)
T PRK11551 272 SLLIGALMDRLRPRRVVLLIYAGILASLAALAAA---P------------SFAGMLLAGFAAGL-FVVGGQSVLYALAPL 335 (406)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc---C------------cHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 9999999999999998877655554444333211 0 00111111111111 122334556688899
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhcc-chhhHHHHHHHHHHHHHHHh
Q 016431 315 ILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSS-GGTFLIYGIVCAFTVAFVSL 371 (389)
Q Consensus 315 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 371 (389)
.+|+++|+++.|+.+....+|..++|.+.|.+.+... +...+.....+.+.+.+..+
T Consensus 336 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 336 FYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998533 33333333333333333333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=240.58 Aligned_cols=335 Identities=20% Similarity=0.296 Sum_probs=204.3
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchh--------HHHHHHHHhhhcccccccccceeeeeccCccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 73 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 73 (389)
+|+++.|+++||+||||.++.+..++++++++++++++++ .+++.|+++|++.+...+....++.|++|+++
T Consensus 71 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~ 150 (434)
T PRK15075 71 LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR 150 (434)
T ss_pred hHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc
Confidence 5678999999999999999999999999999999999987 46889999999999999988999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHHhccc------------cchHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHH
Q 016431 74 RGSLGSVNQLSVTIGIMLAYLLGLF------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 141 (389)
Q Consensus 74 r~~~~~~~~~~~~lG~~l~~~i~~~------------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~ 141 (389)
|++++++...+.++|..+++.++.. .|||++|++..+...+........||++++..+
T Consensus 151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~---------- 220 (434)
T PRK15075 151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLAR---------- 220 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHh----------
Confidence 9999999888877777666655543 289999987654332222222223333211000
Q ss_pred HHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCc
Q 016431 142 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSS 220 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 220 (389)
+ + +.+.+..++...+++ +...... ...+.....++....+.|.++++ .|.+..
T Consensus 221 --------------------~-~--~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~ 274 (434)
T PRK15075 221 --------------------K-H--RPSMREIFRSLAANW--RIVLAGM-LMVAMTTVSFYLITVYTPTFGKTVLHLSAA 274 (434)
T ss_pred --------------------h-h--ccccccHHHHHHHhH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 0 0 000011122222221 1111111 22222233355677788888775 577655
Q ss_pred c--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheee
Q 016431 221 N--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVI 298 (389)
Q Consensus 221 ~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (389)
+ .......++.+++.++.|+++||++||+....+..+......... ..... . .. ..... ....+...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~-~----~~---~~~~~--~~~~~~~~ 343 (434)
T PRK15075 275 DSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPAL-SWLVA-A----PS---FARML--AVELWLSF 343 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HHHHc-C----Cc---hHHHH--HHHHHHHH
Confidence 4 444556788889999999999999999987765444322111111 00000 0 00 00011 11111111
Q ss_pred eeecccccchhhhhccccccchhhhhhhHHHHHHH-HHHHHHHHHhHHHhhh-ccchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 299 SFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANW-LVSWIVTMTANFLLDW-SSGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
+++ ...+..+.+..|.+|++.|+++.|+.+.... +++.++|.+.|.+.|. +.......+.+.+.+..........+.
T Consensus 344 ~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (434)
T PRK15075 344 LYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRR 422 (434)
T ss_pred HHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 111 2233445788999999999999999755554 4588899999999884 322221111112222333344445555
Q ss_pred CCCCHHHH
Q 016431 377 KGRSLEEI 384 (389)
Q Consensus 377 ~~~~~~~~ 384 (389)
++.+.+..
T Consensus 423 ~~~~~~~~ 430 (434)
T PRK15075 423 RGARLQAA 430 (434)
T ss_pred cchhhhhh
Confidence 55444433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=237.61 Aligned_cols=369 Identities=20% Similarity=0.231 Sum_probs=260.6
Q ss_pred CchhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccc-------hhHHHHHHHHhhhcccccccccceeeeeccCccc
Q 016431 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD-------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 73 (389)
Q Consensus 1 lig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 73 (389)
++||++.|+++||+|||+++...+++..+++++++++.. ..++...|++.|+|.|+-+|...+..+|...+++
T Consensus 98 i~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~ 177 (538)
T KOG0252|consen 98 IFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT 177 (538)
T ss_pred HHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc
Confidence 369999999999999999999999999999998888632 4588899999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHHhcccc-------------------chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCC
Q 016431 74 RGSLGSVNQLSVTIGIMLAYLLGLFV-------------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGM 134 (389)
Q Consensus 74 r~~~~~~~~~~~~lG~~l~~~i~~~~-------------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 134 (389)
||...+.+-+..+.|...|.+++..+ -||..+.+.+++++..+...+.+|||+++....++
T Consensus 178 RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~ 257 (538)
T KOG0252|consen 178 RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSK 257 (538)
T ss_pred ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhc
Confidence 99999988888888887777666554 39999999999999999999999999987633332
Q ss_pred hhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccc---hHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHH
Q 016431 135 TEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI---RFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI 211 (389)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (389)
..+ +...+..+.... +.++.++. +.....++. .+...+.++ .-..++..+..++..-..++....+...+
T Consensus 258 ~~~--~a~~d~~k~~~~---~~~~~~~~-~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I 330 (538)
T KOG0252|consen 258 KLK--QAAGDMKKVLSV---DIEAESTA-ESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVI 330 (538)
T ss_pred CHh--hhhhcccccccc---ccchhhcc-ccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHH
Confidence 211 111111111101 11111110 111111112 223333333 22456666677776666677888888888
Q ss_pred HhhcCCCCcc--H---------HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCcc
Q 016431 212 FANAGISSSN--V---------ATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 280 (389)
Q Consensus 212 ~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (389)
+++.+..+.. . ...+.....++|..+...++|++|||++.+.++.++.+..+.++..+.. .
T Consensus 331 ~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~--~------ 402 (538)
T KOG0252|consen 331 FSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ--L------ 402 (538)
T ss_pred HHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc--c------
Confidence 8877765544 1 1122233344566777788999999999999999999888877753221 0
Q ss_pred chhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh------hccchh
Q 016431 281 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD------WSSGGT 354 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~~~~~ 354 (389)
.......+...+..+..+.+.+.....+.+|.+|.+.|++..|+....+..|++++.....++.+ .+....
T Consensus 403 ---~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v 479 (538)
T KOG0252|consen 403 ---ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNV 479 (538)
T ss_pred ---cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHH
Confidence 01111222222233344667777778999999999999999999999999999999999999888 233445
Q ss_pred hHHHHHHHHHHHHHHHhhcccCCCCCHHHHhhhh
Q 016431 355 FLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 388 (389)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (389)
+++++.++.+ +.+..+++||+++++.+|++.+.
T Consensus 480 ~~i~~~~~~~-gi~~T~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 480 FIILAGCMLL-GILFTLLIPETKGKSLEEISNEE 512 (538)
T ss_pred HHHHHHHHHH-hHheeEEeecccccCHHHhcChh
Confidence 6666655444 45566677899999999886543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=234.26 Aligned_cols=312 Identities=13% Similarity=0.090 Sum_probs=202.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+......+......++|++.+++.|+++|++.+. .+.....++|++|+++|++++++.
T Consensus 41 i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~ 119 (368)
T TIGR00903 41 ALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLL 119 (368)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHH
Confidence 5789999999999999987766555555443333347999999999999999986 455566679999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+.+.++|..++++++..+ +||+.|++.++++++. ++.++++||+|++.. +.. + .
T Consensus 120 ~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~---~~~--------------~----~ 178 (368)
T TIGR00903 120 SFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA---EGF--------------G----F 178 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCc--------------c----h
Confidence 999999999999988887 9999999977766655 455667899886321 000 0 0
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATG 236 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (389)
++ ...+++++++++..+..... .++....++.+..|.|.++++.+++.. ......+....+.+
T Consensus 179 ~~-----------~~~~~~~ll~~~~~~~~~~~----~~~~~~~~~~~~~wlp~~L~~~g~s~~--~~~~~~l~~~~g~~ 241 (368)
T TIGR00903 179 KD-----------AVKEFGALAGRKDLWIIGAI----LGFGVALFDNLAIWLEAALRPAGLEDI--AGDAVALAILAGLI 241 (368)
T ss_pred HH-----------HHHHHHHHHcChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHHH
Confidence 00 00124566766554433333 333333456777889999987776543 22223344444555
Q ss_pred HHHHHHhhhchh---HHHHH-HhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhh
Q 016431 237 VNTWLMDKAGRR---LLLLI-SSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 312 (389)
Q Consensus 237 ~~g~l~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
..+++.||..|| +.... ...+.++....+.. ..+ ......... ....+.....+..+++.
T Consensus 242 g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~---~~~------------~~~~~~~~~-l~~~~~~~~~~~~~~~~ 305 (368)
T TIGR00903 242 GVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF---ELN------------RLALFAFIG-IAGLLMLPAYAIIMDWI 305 (368)
T ss_pred HHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH---ccc------------cHHHHHHHH-HHHHhhhhhHHHHHHHH
Confidence 567888887643 32222 22222222222211 000 011111111 11122333345566899
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHHHHH
Q 016431 313 SEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFV 369 (389)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. +....+..+++...+..+..
T Consensus 306 ~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 306 GKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988774 44455666666555544443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=240.93 Aligned_cols=322 Identities=15% Similarity=0.181 Sum_probs=209.6
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..++++++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++++
T Consensus 58 ~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~ 137 (412)
T TIGR02332 58 ICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALF 137 (412)
T ss_pred HHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----------chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCc
Q 016431 82 QLSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDT 150 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----------~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 150 (389)
+.+.++|.++++.+++.+ +||+.|++.++++++. .+.++++||+|+.... -..++.+...+.......
T Consensus 138 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~ 216 (412)
T TIGR02332 138 MIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQL 216 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhccc
Confidence 999999999998887542 8999999988877655 4556678998852100 001111111111110000
Q ss_pred chhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhc--CCCCcc--HHHHH
Q 016431 151 DISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA--GISSSN--VATFG 226 (389)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~ 226 (389)
+. ++.++..+++.......++++++ +. .+......++....+..+..|.|.++++. +.+... .....
T Consensus 217 ~~----~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~ 287 (412)
T TIGR02332 217 TL----EQPEGAFAHAAMPQRSMLREIFT-PA----IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAI 287 (412)
T ss_pred cc----cccccccccccccHHHHHHHhcC-hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhH
Confidence 00 00000000000011112333332 21 23333333444444667778889888774 344333 45566
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHH-HHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccc
Q 016431 227 LGVVQVVATGVNTWLMDKAGRRLLL-LISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVG 305 (389)
Q Consensus 227 ~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (389)
..++.+++.++.|+++||+++|+.. ........++. .+... .. + . ............+. ....
T Consensus 288 ~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~--~~-----~-----~--~~~~~~~~~~~~g~-~~~~ 351 (412)
T TIGR02332 288 PQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA--TD-----H-----N--LIQLLGIIMASMGS-FSAM 351 (412)
T ss_pred HHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh--cC-----C-----H--HHHHHHHHHHHHHh-hhhh
Confidence 6788999999999999999977643 33332333222 11110 00 0 0 11111111111111 1112
Q ss_pred cchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 306 AIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
+..+....|.+|++.|++++|+.+...++|++++|.+.|.+.|.
T Consensus 352 ~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~ 395 (412)
T TIGR02332 352 AIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDA 395 (412)
T ss_pred hHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccccc
Confidence 33345557789999999999999999999999999999999984
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-31 Score=234.32 Aligned_cols=313 Identities=13% Similarity=0.082 Sum_probs=212.6
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+||||++..+.++.+++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.
T Consensus 59 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~ 138 (390)
T PRK03545 59 LMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLL 138 (390)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHH
Confidence 46789999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHH-HHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
..+.++|..++|++++.+ +||+.|++.++.+++..+ ....+||+|+. +.
T Consensus 139 ~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~~--------------------- 192 (390)
T PRK03545 139 ATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-----HS--------------------- 192 (390)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----Cc---------------------
Confidence 999999999999988776 999999998887766643 34446665420 00
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~ 233 (389)
+...+.++.++++..+.......+.... ......+.+.+.+ +.|.+... .......++.++
T Consensus 193 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~ 256 (390)
T PRK03545 193 ------------GSLKSLPLLFRRPALVSLYLLTVVVVTA----HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGII 256 (390)
T ss_pred ------------chHHHHHHHHhCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 0001233455555443332222222221 1222233444444 45666554 445556788899
Q ss_pred HHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhc
Q 016431 234 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 313 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (389)
++++.+++.||+++|... .+..+...+...+... . ...........+.+.+. ....+.......
T Consensus 257 g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~--~------------~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~ 320 (390)
T PRK03545 257 GSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA--A------------NSEWHLSVLSIFWGIAI-MCIGLAMQVKVL 320 (390)
T ss_pred HHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH--h------------chHHHHHHHHHHHHHHH-hcchHHHHHHHH
Confidence 999999999999987643 3433333333322211 0 00111111111111111 222333446666
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhc
Q 016431 314 EILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWV 373 (389)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (389)
|..| +.|++++|+.+...++|..+||.+.|.+.| .+....+...+.+..+..++.....
T Consensus 321 ~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 321 KLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 7766 578999999999999999999999999998 5555566666655555544444443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-31 Score=233.18 Aligned_cols=320 Identities=12% Similarity=0.089 Sum_probs=215.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+..+++++.+++++++|++.+++.|+++|++.+...+....++.|++| ++|+++++.+
T Consensus 59 l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~ 137 (393)
T PRK09705 59 GLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLW 137 (393)
T ss_pred HHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999997 7899999999
Q ss_pred HHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHHHhcc-cCCchhhHhcCChhHHHHHHHHHhcCCcchhHH
Q 016431 82 QLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFI-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIE 155 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
..+...|..+++.++..+ +||+.+.+.++..++..+.++.. ++.|+ + +
T Consensus 138 ~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~------------------- 191 (393)
T PRK09705 138 SAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA-----S--S------------------- 191 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----c--c-------------------
Confidence 988888877777776654 79998876665554443333322 22211 0 0
Q ss_pred HHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHH
Q 016431 156 VNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 233 (389)
++++ ...++.++++..+.... ........+.....+.|.++++.|.+... .......++.++
T Consensus 192 --------~~~~----~~~~~~l~~~~~~~l~~----~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~ 255 (393)
T PRK09705 192 --------HKTT----TTPVRVVFTPRAWTLGV----YFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAA 255 (393)
T ss_pred --------cCCC----cCCcccccCHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHH
Confidence 0000 00112222232222222 22222223456667777777777776554 556677889999
Q ss_pred HHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhc
Q 016431 234 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 313 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (389)
++++.+++.||.+||+....+..+..++...+... .. ..... ... +...+.+ ...|.......
T Consensus 256 g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~---~~----------~~~~~-~~~--l~g~g~g-~~~~~~~~~~~ 318 (393)
T PRK09705 256 GALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL---PL----------QLPVL-WAM--VCGLGLG-GAFPLCLLLAL 318 (393)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc---cc----------hHHHH-HHH--HHHHhcc-chHHHHHHHHH
Confidence 99999999999999988887776666655443311 00 00011 111 1112222 22343444555
Q ss_pred ccc-ccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccch-hhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 016431 314 EIL-PVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGG-TFLIYGIVCAFTVAFVSLWVPETKGRSL 381 (389)
Q Consensus 314 ~~~-~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (389)
+.. |++++++.+|+.+...+++..++|.+.|++.| .+.+. .+.+....+.+..+....+.+|++++.+
T Consensus 319 ~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 319 DHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 666 46789999999999999999999999999999 44333 3444444445544555566677665543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=244.18 Aligned_cols=315 Identities=16% Similarity=0.089 Sum_probs=202.0
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHh-----ccchhHHHHHHHHhhhcccccccccceeeeeccCcccccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS 76 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 76 (389)
+++++.|+++||+|||+++..+.+++++..++.+. ++|++.+++.|+++|++.+...|...+++.||+|+++|++
T Consensus 79 ~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~ 158 (467)
T PRK09556 79 VGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGR 158 (467)
T ss_pred HHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceee
Confidence 57899999999999999999988888887776665 5899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcccc-------chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcC
Q 016431 77 LGSVNQLSVTIGIMLAYLLGLFV-------NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGF 148 (389)
Q Consensus 77 ~~~~~~~~~~lG~~l~~~i~~~~-------~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 148 (389)
++++.+.+.++|.++++.+.... +||..|.+.+++.++. ++.+++.+|+|+.....++ ++ .. .+
T Consensus 159 a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~-~~---~~---~~- 230 (467)
T PRK09556 159 FLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA-EE---IF---GE- 230 (467)
T ss_pred eEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh-hh---cc---cC-
Confidence 99999999999999998877533 5898888877766655 4444556777642211110 00 00 00
Q ss_pred CcchhHHHHHHHHHhhhccccccch-HHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHH
Q 016431 149 DTDISIEVNEIKRSVASSSRRTAIR-FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VAT 224 (389)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 224 (389)
.... + ++..+.++...... .+..++++..+ ...+..++....+.....+.|.+++ +.|.+..+ ...
T Consensus 231 --~~~~---~-~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~ 300 (467)
T PRK09556 231 --PISE---E-DKETESTDMTKWQIFVEYVLKNPVIW----LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTF 300 (467)
T ss_pred --ccch---h-hhccccccCcHHHHHHHHHHcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 0000 0 00000000000011 11234444333 2223333333334456778887775 46776655 444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeeccc
Q 016431 225 FGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGV 304 (389)
Q Consensus 225 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (389)
....++.+++.++.|+++||++||+...........+...+... ... .........+..+. ...+.
T Consensus 301 ~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~~~~~~G~-~~~~~ 366 (467)
T PRK09556 301 TLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ--HAT-----------SEYMYLASLFALGF-LVFGP 366 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH--hcC-----------cHHHHHHHHHHHHH-HHhhH
Confidence 55677889999999999999999887655443333322211110 000 01111111111111 11121
Q ss_pred ccchhhhhccccccchhhhhhhHHHHHHHH-HHHHHHHHhHHHhh
Q 016431 305 GAIPWVIMSEILPVNIKSLAGSVATLANWL-VSWIVTMTANFLLD 348 (389)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~ 348 (389)
.........|.+|++.++++.|+.+...++ |..++|.+.|.+.|
T Consensus 367 ~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 367 QLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 122235667999999999999999999997 77999999999998
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=236.44 Aligned_cols=320 Identities=18% Similarity=0.201 Sum_probs=210.2
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++.++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.
T Consensus 62 ~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 141 (405)
T TIGR00891 62 FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLL 141 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----c--hHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----N--WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIE 155 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~--wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
+.+.++|.++++.+++.+ + ||+.|++.++..++..+.....||++++..++++.++..+..++..+.++..
T Consensus 142 ~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 218 (405)
T TIGR00891 142 ISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI--- 218 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh---
Confidence 999999999999888765 4 9999998777766666666678888765433222211111111111100000
Q ss_pred HHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHHHHHHHHHH
Q 016431 156 VNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQV 232 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~ 232 (389)
+...++.....++..+ +.+...........+... .......+.|.+.. +.|.+..+ .......++.+
T Consensus 219 --------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 288 (405)
T TIGR00891 219 --------ANIVMTLAAAMVQSAG-KRWPTFVYLVVLVLFANL-YSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAI 288 (405)
T ss_pred --------hhhhhhhhHHhhhhhh-hhhHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 0000000001111111 111111111111111111 12233344455543 45766554 44556678899
Q ss_pred HHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhh
Q 016431 233 VATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 312 (389)
Q Consensus 233 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
++.++.+++.||++||+.+..+............. . .. ............. ....+..+....+.
T Consensus 289 ~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--~-~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 353 (405)
T TIGR00891 289 VGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA--I-GA-----------NVAVLGLGLFFQQ-MLVQGIWGILPKHL 353 (405)
T ss_pred HHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH--h-CC-----------chHHHHHHHHHHH-HHHccchhhHHHHH
Confidence 99999999999999999887766544332222111 0 00 0011111111111 11223334555788
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 313 SEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
.|.+|+++|++++|+.+...+++..++|.+.|.+.|.
T Consensus 354 ~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~ 390 (405)
T TIGR00891 354 GEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR 390 (405)
T ss_pred hhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999994
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=239.96 Aligned_cols=334 Identities=15% Similarity=0.109 Sum_probs=235.1
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHh-----ccchhHHHHHHHHhhhcccccccccceeeeeccCcccccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS 76 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 76 (389)
+++++.|+++||+|||+++..+..+.+++.+..+. .++++.+++.|+++|++.+...+...+++.|+.|+++|++
T Consensus 67 ~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (417)
T PRK10489 67 IGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQ 146 (417)
T ss_pred HHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHH
Confidence 57889999999999999999988888877665542 5678899999999999988888888999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcch
Q 016431 77 LGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI 152 (389)
Q Consensus 77 ~~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (389)
+.++.....++|..+||.+++.+ +||+.|++.++..++..+..+.+||+++... ++ + +
T Consensus 147 ~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~-~--------------~- 208 (417)
T PRK10489 147 AGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQ--PR-E--------------H- 208 (417)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCc--cc-c--------------c-
Confidence 99999999999999999999876 8999999888777776666667777643100 00 0 0
Q ss_pred hHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHHHH
Q 016431 153 SIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGV 229 (389)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~ 229 (389)
..++....++..++++..+...+...+... ......+.|.+.++ .|.+... .......+
T Consensus 209 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~ 270 (417)
T PRK10489 209 -------------PLRSLLAGFRFLLASPVVGGIALLGGLLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPL 270 (417)
T ss_pred -------------chHHHHHHHHHHHcChHHHHHHHHHHHHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHH
Confidence 000001123334444443333222222111 22344556666666 6776544 44555678
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchh
Q 016431 230 VQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 309 (389)
Q Consensus 230 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (389)
+.+++.++.+++.||.++++.+..+..+..++..++... ...........+.+.+ .....+...
T Consensus 271 g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~-~~~~~~~~~ 334 (417)
T PRK10489 271 GAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM---------------PMWILAVLCLALFGYL-SAISSLLQY 334 (417)
T ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc---------------chHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 888999999999999777777777666665555444321 0111111222222211 112234455
Q ss_pred hhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHhhh
Q 016431 310 VIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFS 387 (389)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (389)
++..|..|++.|++++|+.+...++|..++|.+.|.+.+ .+....+...+++..+.+++.....++.|+++++|+|++
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 788899999999999999999999999999999999999 566667777777777777777788888888888887765
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-31 Score=235.65 Aligned_cols=338 Identities=18% Similarity=0.213 Sum_probs=220.0
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++.+++..++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++.
T Consensus 44 ~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 123 (399)
T TIGR00893 44 VGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIF 123 (399)
T ss_pred HHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+...++|..+++.+++.+ +||+.|++.++..++..+. .+..||+|+..... .++.++...+ +..
T Consensus 124 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~------- 192 (399)
T TIGR00893 124 NSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL--TEEEKYIVVG--GLL------- 192 (399)
T ss_pred HHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccC--CHHHHhhcch--hhc-------
Confidence 999999999999998875 8999999888777665444 44566665321110 1110000000 000
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~ 233 (389)
.+.+.+++++..+...++.++++..+...... +...........+.|.+.++ .+.+..+ .......+..++
T Consensus 193 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (399)
T TIGR00893 193 --AEQQGKGPSTPKKYQIKELLKDRRVWGLALGQ----FLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFI 266 (399)
T ss_pred --cccccccccCCCccchHHHhcCHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHH
Confidence 00001111122233455555555433332222 22222344555666666644 5665443 555666788899
Q ss_pred HHHHHHHHHhhhchhHHHH-HHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhh
Q 016431 234 ATGVNTWLMDKAGRRLLLL-ISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 312 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
+.++.+++.||++||+... ........+............. ....... ....... .+..+..+..+++.
T Consensus 267 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 336 (399)
T TIGR00893 267 GMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY--------VNIPYAA-LALVALG-FFGLGAGAIGWALI 336 (399)
T ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc--------chhHHHH-HHHHHHH-HhchhhhhHHHHHH
Confidence 9999999999999986211 1111111111111111111100 0011111 1111111 22223567777999
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh-c-cchhhHHHHHHHHHHH
Q 016431 313 SEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW-S-SGGTFLIYGIVCAFTV 366 (389)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~-~~~~~~~~~~~~~~~~ 366 (389)
.|.+|+++|+++.|+.+...++|..++|.+.|.+.|. + +...+.+.+++..+..
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 392 (399)
T TIGR00893 337 SDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGA 392 (399)
T ss_pred HhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999984 4 3444555554444433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=228.51 Aligned_cols=304 Identities=22% Similarity=0.310 Sum_probs=206.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchh--------HHHHHHHHhhhcccccccccceeeeeccCccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 73 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 73 (389)
+++++.|+++||+||||++..+.++..++.++++++++++ .+++.|+++|++.+...+...+++.|++|+++
T Consensus 50 i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 129 (394)
T TIGR00883 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK 129 (394)
T ss_pred hHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc
Confidence 5789999999999999999999999999999999999875 47889999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHHhccc------------cchHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHH
Q 016431 74 RGSLGSVNQLSVTIGIMLAYLLGLF------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 141 (389)
Q Consensus 74 r~~~~~~~~~~~~lG~~l~~~i~~~------------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~ 141 (389)
|++..++.+.+..+|.++++.++.. .+||+.|++.++..++..+.....||+|++..++
T Consensus 130 r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 200 (394)
T TIGR00883 130 RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ--------- 200 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH---------
Confidence 9999999999999999999876532 2799999988777666665556677765321100
Q ss_pred HHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHH-hhcCCCCc
Q 016431 142 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF-ANAGISSS 220 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 220 (389)
+++++.+.+.++.++++.. ....... ..+...........+.|.+. ++.+.++.
T Consensus 201 -----------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 255 (394)
T TIGR00883 201 -----------------------EKHKKKRGPIRETLTKHRK-PFLLGLG-LVIATTTTFYLITTYLPTYLTQTLGLSAN 255 (394)
T ss_pred -----------------------hccccccCCHHHHHHhchH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 0011112334445544331 1222222 22222222445556667766 44566555
Q ss_pred c--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheee
Q 016431 221 N--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVI 298 (389)
Q Consensus 221 ~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (389)
. .......+...++.++.+++.||++||+.+.....+..+............. ..............
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~ 324 (394)
T TIGR00883 256 SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSG-----------SFTLFFFLVLGLAL 324 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCC-----------chHHHHHHHHHHHH
Confidence 4 4455567888899999999999999998776554443332211111110000 01111111111111
Q ss_pred eeecccccchhhhhccccccchhhhhhhHH-HHHHHHHHHHHHHHhHHHhhhcc
Q 016431 299 SFSLGVGAIPWVIMSEILPVNIKSLAGSVA-TLANWLVSWIVTMTANFLLDWSS 351 (389)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~~ 351 (389)
+ .....+...++..|.+|++.|+++.++. +....+|..++|.+.|.+.|..+
T Consensus 325 ~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 325 I-GGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred H-HHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 1 1233455568999999999999999985 55567888999999999998433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=228.45 Aligned_cols=316 Identities=17% Similarity=0.166 Sum_probs=208.3
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc---c-----chhHHHHHHHHhhhcccccccccceeeeeccCccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---K-----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 73 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~-----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 73 (389)
+++++.|+++||+||||+++.+.++.+++.+.+.++ + +++.+++.|+++|++.+...+...+++.|++|+++
T Consensus 66 i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 145 (399)
T PRK05122 66 LSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH 145 (399)
T ss_pred HhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh
Confidence 578999999999999999999999988887766553 2 56688999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCC
Q 016431 74 RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD 149 (389)
Q Consensus 74 r~~~~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 149 (389)
|++++++.+.+..+|.++++.+++.+ +||+.+++.++..++..+.....||+++. ++
T Consensus 146 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------- 206 (399)
T PRK05122 146 TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPPV---KG---------------- 206 (399)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCCC---Cc----------------
Confidence 99999999999999999998888776 89998887666555443333323332210 00
Q ss_pred cchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCccHHHHHHHH
Q 016431 150 TDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGV 229 (389)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (389)
++.+.++.+++. +.......+... .+.....+.+.+..+.+.+..........+
T Consensus 207 --------------------~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (399)
T PRK05122 207 --------------------ERLPFRRVLGRV--WPYGMGLALASI----GFGTIATFITLYYAARGWDGAALALTLFGV 260 (399)
T ss_pred --------------------cchhHHHHHHHH--HHHHHHHHHHHH----HHHHHHHHHHHHHHHcccccchHHHHHHHH
Confidence 000111111110 111111111111 122334455555555565444455556678
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchh
Q 016431 230 VQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 309 (389)
Q Consensus 230 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (389)
+.+++.+..+++.||+++|+.+..+..+..++..++... ...........+.+.+.+ ...+...
T Consensus 261 ~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~G~~~~-~~~~~~~ 324 (399)
T PRK05122 261 AFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA---------------PSPWMALIGAALTGFGFS-LVFPALG 324 (399)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHhHH-HHHHHHH
Confidence 888999999999999999998887777666665554421 001111222222222222 2234444
Q ss_pred hhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCCCC
Q 016431 310 VIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGR 379 (389)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (389)
....|..|+++|+++.|+.+....+|..++|.+.|.+.+ .++...+...+++..+. .+.....++++++
T Consensus 325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 394 (399)
T PRK05122 325 VEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLG-LALTWLLYRRAPR 394 (399)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHhcccccc
Confidence 667788999999999999999999999999999999988 45545555555544444 3344444444333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=232.48 Aligned_cols=348 Identities=14% Similarity=0.146 Sum_probs=209.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc----chhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
+++++.|+++||+|||++++.+.++.+++.+.+++++ +++.+++.|++.|++.+...+.....+.|++|+++|+++
T Consensus 78 ~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~ 157 (452)
T PRK11273 78 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 157 (452)
T ss_pred HHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHH
Confidence 5789999999999999999999999999999888763 678889999999999999888888889999999999999
Q ss_pred hhhhHHHHHHHHH-HHHHhcccc----chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcc
Q 016431 78 GSVNQLSVTIGIM-LAYLLGLFV----NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTD 151 (389)
Q Consensus 78 ~~~~~~~~~lG~~-l~~~i~~~~----~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
+++++.+.++|.. .+|+++... +||+.|++.+++.++. ++..+++||+|+....+++ ++.++ +.+ +
T Consensus 158 ~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~------~~~-~ 229 (452)
T PRK11273 158 VSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYKN------DYP-D 229 (452)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhhh------ccc-c
Confidence 9999999998864 455543222 9999999988766664 5556678888753211111 11000 000 0
Q ss_pred hhHHHHHHHHHhhhccccccchH-HHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHH
Q 016431 152 ISIEVNEIKRSVASSSRRTAIRF-AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGL 227 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~ 227 (389)
+ .+..++++.+.++.+ +..++++..+...+...+.. ...+....+.|.++++ .+++... ......
T Consensus 230 ------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~ 298 (452)
T PRK11273 230 ------D-YNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVY----LLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 298 (452)
T ss_pred ------c-cccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 000000000001111 12334433332222222222 2234556677887765 5666444 444556
Q ss_pred HHHHHHHHHHHHHHHhhh--chhHHHH-HHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeeccc
Q 016431 228 GVVQVVATGVNTWLMDKA--GRRLLLL-ISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGV 304 (389)
Q Consensus 228 ~~~~~~~~~~~g~l~d~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (389)
.++.+++.++.|+++||+ +||+... ....+..++...+.. .... ...........+... ..+.
T Consensus 299 ~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~--~~~~-----------~~~~~~~~~~~~g~~-~~~~ 364 (452)
T PRK11273 299 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL--NPAG-----------NPTVDMACMIVIGFL-IYGP 364 (452)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH--hccc-----------ChHHHHHHHHHHHHH-HHhH
Confidence 778889999999999998 4444322 222222222221111 0000 001111111111111 1111
Q ss_pred ccchhhhhccccccchhhhhhhHHHHHHHHHHHH-HHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 016431 305 GAIPWVIMSEILPVNIKSLAGSVATLANWLVSWI-VTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLE 382 (389)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (389)
.+....+..|.+|++.|++++|+.+...++|+.+ +|.+.|.+.| .++...+.+.++.+.+..+....+ .+.++|+.+
T Consensus 365 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~ 443 (452)
T PRK11273 365 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV-MIGEKRHHE 443 (452)
T ss_pred HHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-hccccchHH
Confidence 1222356779999999999999999998888765 7999999998 455556666666555544444333 333344444
Q ss_pred H
Q 016431 383 E 383 (389)
Q Consensus 383 ~ 383 (389)
|
T Consensus 444 ~ 444 (452)
T PRK11273 444 E 444 (452)
T ss_pred H
Confidence 3
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=230.07 Aligned_cols=311 Identities=15% Similarity=0.083 Sum_probs=210.9
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.+...+.....+.|++| ++|+++.++.
T Consensus 53 ~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 131 (377)
T TIGR00890 53 MSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGII 131 (377)
T ss_pred HHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999888888888889886 5799999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
..+.++|..+++++...+ +||+.|++.++..++..+. .++++|+|+.. .+++
T Consensus 132 ~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------------- 188 (377)
T TIGR00890 132 IGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-IKTN---------------------- 188 (377)
T ss_pred HHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc-cccC----------------------
Confidence 999999987755554443 8999999988877776444 44455543210 0000
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVA 234 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 234 (389)
++.+++..+.++.++++..+............ ......+.+.+.++.+.++.. .......+..+++
T Consensus 189 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (377)
T TIGR00890 189 --------IEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVS----GLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGG 256 (377)
T ss_pred --------cccchhhhhHHHHHcCccHHHHHHHHHHHhHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 00000011233445555443333222222211 222333344455666665543 4555667888999
Q ss_pred HHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhcc
Q 016431 235 TGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 314 (389)
Q Consensus 235 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (389)
+++.+++.||++||+.+..+..+..++..++.... . .................+ ...+....+..|
T Consensus 257 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~----------~~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~ 322 (377)
T TIGR00890 257 RPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP---M----------LNDVLFLATVALVFFTWG-GTISLFPSLVSD 322 (377)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc---c----------chhHHHHHHHHHHHHHhc-cchhccHHHHHH
Confidence 99999999999999988887777776665544210 0 000111111111111111 222344478889
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHH
Q 016431 315 ILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVC 362 (389)
Q Consensus 315 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~ 362 (389)
.+|+++|+++.|+.+....+|..++|.+.|.+.+ .++...+.+.+++.
T Consensus 323 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~ 371 (377)
T TIGR00890 323 IFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFA 371 (377)
T ss_pred HhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence 9999999999999999999999999999999988 45444555544433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=227.13 Aligned_cols=324 Identities=21% Similarity=0.222 Sum_probs=215.1
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+.+..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.
T Consensus 67 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 146 (398)
T TIGR00895 67 FGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLM 146 (398)
T ss_pred HHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHH-HHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL-LIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
..+..+|..+++.+++.+ +||+.|++.++...+ ..+...++||++++..++ +.++..+..++......++..+
T Consensus 147 ~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 224 (398)
T TIGR00895 147 FCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS- 224 (398)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-
Confidence 999999999999888776 899999888654444 455566789988765444 2333222222221111100000
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVA 234 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 234 (389)
+ .++.+.+.+..+...+..++++..+.... ..+..............+.|.+.++.+.+... .......++.+++
T Consensus 225 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (398)
T TIGR00895 225 -A-LPEQKATQGTKRSVFKALFQGKTARITVL-LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIG 301 (398)
T ss_pred -c-ccccccccchhhHHHHHHhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 0 00000000111112222333332222222 22222233333455566777777777776554 4555667888999
Q ss_pred HHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhcc
Q 016431 235 TGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 314 (389)
Q Consensus 235 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (389)
.++.+++.||+++|+... ...+..+...++... ..+ .........+...+ .....+...++..|
T Consensus 302 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~~g~~-~~~~~~~~~~~~~~ 365 (398)
T TIGR00895 302 SIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGST--LFS------------PTLLLLLGAIAGFF-VNGGQSGLYALMAL 365 (398)
T ss_pred HHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHH--hhC------------HHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 999999999999984433 333333322222210 000 11111122222222 22334556689999
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 016431 315 ILPVNIKSLAGSVATLANWLVSWIVTMTANFL 346 (389)
Q Consensus 315 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 346 (389)
.+|++.|+++.|+.+....+|..++|.+.|.+
T Consensus 366 ~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 366 FYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 99999999999999999999999999999875
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=230.10 Aligned_cols=345 Identities=17% Similarity=0.176 Sum_probs=215.4
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++.
T Consensus 70 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 149 (496)
T PRK03893 70 FGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFL 149 (496)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 157 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (389)
..+.++|..++|.+++.+ +||+.|++.++..++.++....+||++++..++++.++.++..+.....+........
T Consensus 150 ~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (496)
T PRK03893 150 ISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILL 229 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHH
Confidence 999999999999888776 8999998866655555555556788765433222211111111111000000000000
Q ss_pred HH------HHHhhhccccccc----------hHHH--HhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCC
Q 016431 158 EI------KRSVASSSRRTAI----------RFAE--LKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGIS 218 (389)
Q Consensus 158 ~~------~~~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 218 (389)
.. ............. .... ...+...++.........+...........+.|.+++ +.|.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~ 309 (496)
T PRK03893 230 TLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYD 309 (496)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCC
Confidence 00 0000000000000 0000 0000111111111122222222222234566777774 66776
Q ss_pred Ccc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhhe
Q 016431 219 SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTV 296 (389)
Q Consensus 219 ~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (389)
..+ .......++.+++.++.|++.||++||+.+..+..+..+..+.+... .. ........... .
T Consensus 310 ~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~----------~~~~~~~~~~~-~ 375 (496)
T PRK03893 310 PHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI---GG----------ANVWVLGLLLF-F 375 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc---cc----------cHHHHHHHHHH-H
Confidence 555 55566678889999999999999999998777665544443322210 00 00011111111 1
Q ss_pred eeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHH
Q 016431 297 VISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGI 360 (389)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~ 360 (389)
....+.+..+....+..|.+|++.|++++|+.+....+|..++|.+.|.+.| .+....+...+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 1111122234445788899999999999999999999999999999999998 444444444443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=222.42 Aligned_cols=311 Identities=14% Similarity=0.120 Sum_probs=202.2
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+..+.+++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++.
T Consensus 53 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
T PRK10091 53 VGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGM 132 (382)
T ss_pred HHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999988888888999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHH-HHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
..+..+|..++|++++.+ +||+.|++.++..++..+ ....+||.++. .+. +
T Consensus 133 ~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~----~~~---------------~----- 188 (382)
T PRK10091 133 VSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE----AKG---------------G----- 188 (382)
T ss_pred HHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc----ccc---------------C-----
Confidence 999999999998887766 899999998887666543 44557775420 000 0
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHH-HHHHhhcCCCCcc--HHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS-SNIFANAGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~ 233 (389)
.+..+ +.++++..+....... ...........+. +++.+..|.++.. .......++.++
T Consensus 189 -------------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i 250 (382)
T PRK10091 189 -------------LREQF-HFLRSPAPWLIFAATM----FGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVL 250 (382)
T ss_pred -------------HHHHH-HHhcChHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 00001 1122222221111111 1111122222333 3433446776555 455566788999
Q ss_pred HHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhc
Q 016431 234 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 313 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (389)
+.++.+++.||+++|+....+..+..++.+++.... ...............+......+.......
T Consensus 251 g~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (382)
T PRK10091 251 GNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG--------------GMKTASLIFAFICCAGLFALSAPLQILLLQ 316 (382)
T ss_pred HhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999988877777666654443210 001111111111111111112222223444
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh--ccchhhHHHHHHHHHHHHHHH
Q 016431 314 EILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW--SSGGTFLIYGIVCAFTVAFVS 370 (389)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~ 370 (389)
+..|++.++.+ ..+....+|..+||.+.|.+.|. ++...+...++++.+......
T Consensus 317 ~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 317 NAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred hCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 44555555544 34677889999999999999983 344444444444444333333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-29 Score=221.81 Aligned_cols=308 Identities=17% Similarity=0.158 Sum_probs=203.1
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHH---h-----ccchhHHHHHHHHhhhcccccccccceeeeeccCccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F-----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 73 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 73 (389)
++++++|+++||+||||+++.+.+...++.+... . .+|++.+++.|+++|++.+...+...+++.|++|+|+
T Consensus 66 i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 145 (392)
T PRK12382 66 LTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH 145 (392)
T ss_pred HHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 5689999999999999999999888777654332 2 3578899999999999999888888889999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCC
Q 016431 74 RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD 149 (389)
Q Consensus 74 r~~~~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 149 (389)
|++++++.+.+.++|..++|++++.+ +||+.+.+..+..++........||+++. ++
T Consensus 146 r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------- 206 (392)
T PRK12382 146 SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPAH---AG---------------- 206 (392)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCCC---cc----------------
Confidence 99999999999999999999988766 89987776555443333222223332210 00
Q ss_pred cchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCccHHHHHHHH
Q 016431 150 TDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGV 229 (389)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (389)
+ +.+.++..+.. +.... ...+.. ........+.+.++++.+.+..........+
T Consensus 207 -----------------~---~~~~~~~~~~~-~~~~~-~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (392)
T PRK12382 207 -----------------E---RPSLWSVVGLI-WKPGL-GLALQG----VGFAVIGTFVSLYFASKGWAMAGFTLTAFGG 260 (392)
T ss_pred -----------------c---CchHHHHHHHH-HHhHH-HHHHHH----HHHhHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 0 00011111100 00111 111111 1122344555566666666544455555677
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchh
Q 016431 230 VQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 309 (389)
Q Consensus 230 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (389)
+.+++.+..+++.||+++|+.+..+..+..++..++... . ..........+...+.+ ...+...
T Consensus 261 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~l~g~~~~-~~~~~~~ 324 (392)
T PRK12382 261 AFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA---P------------TAWVALAGAALTGAGCS-LIFPALG 324 (392)
T ss_pred HHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc---c------------cHHHHHHHHHHHHHHHH-hHHHHHH
Confidence 788899999999999999998888777776665554421 0 01111222222222222 2234445
Q ss_pred hhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHH
Q 016431 310 VIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVS 370 (389)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
....|..|+++|+++.|+.+....+|..++|.+.|.+.| .++...+...+.+..+...+..
T Consensus 325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 325 VEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999999998 4555556665555444444333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=217.98 Aligned_cols=306 Identities=18% Similarity=0.176 Sum_probs=203.0
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++|+++.++.
T Consensus 70 ~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~ 149 (394)
T PRK10213 70 FASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVI 149 (394)
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
..+.++|..++|.+++.+ +||+.|++.++.+++..+. ....||+|+. + +
T Consensus 150 ~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-~-------------------- 203 (394)
T PRK10213 150 FGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P-S-------------------- 203 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c-c--------------------
Confidence 999999999999999877 8999999887766655433 3346665420 0 0
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVA 234 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 234 (389)
+...+.++.++++..+.......+..... +....+..|.+.++.|.+... ......+++.+++
T Consensus 204 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig 268 (394)
T PRK10213 204 ------------HQKQNTFRLLQRPGVMAGMIAIFMSFAGQ---FAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVG 268 (394)
T ss_pred ------------cchhHHHHHhcCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 00011223444444333322222222211 112233346666667877655 4455567888999
Q ss_pred HHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhcc
Q 016431 235 TGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 314 (389)
Q Consensus 235 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (389)
.++.+++.||.++ +.+.....+.......+.... ...+.......+.+.++. ...+...+.+.+
T Consensus 269 ~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~~--------------~~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~ 332 (394)
T PRK10213 269 TSLSSFILKRSVK-LALAGAPLVLAVSALVLTLWG--------------SDKIVATGVAIIWGLTFA-LVPVGWSTWITR 332 (394)
T ss_pred HHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHH-hhhHHHHHHHHH
Confidence 9999999999544 433333333222222221110 011111122222222222 223444456777
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHH
Q 016431 315 ILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFT 365 (389)
Q Consensus 315 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~ 365 (389)
..| ++++...+......++|..+||.+.|.+.| .+....+...+.+..+.
T Consensus 333 ~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 333 SLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 776 446677788888889999999999999999 44444444444433333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=227.71 Aligned_cols=332 Identities=14% Similarity=0.107 Sum_probs=209.1
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc--cchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 79 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 79 (389)
+++++.|+++||+|||+++..+.++++++++++.++ .+++.+++.|+++|++.+...+....++.|++|+++|+++++
T Consensus 91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 170 (465)
T TIGR00894 91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG 170 (465)
T ss_pred HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence 578999999999999999999999999999887554 568889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHHHh-cccCCchhhHhcCChhHHHHHHHHHhcCCcchh
Q 016431 80 VNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDIS 153 (389)
Q Consensus 80 ~~~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (389)
+...+..+|.++++++++.+ +||+.|++.++.+++..+.++ +.+|+|+.....++ ++ ++..+
T Consensus 171 ~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~-~~~i~---------- 238 (465)
T TIGR00894 171 MSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISK-FE-KKYIN---------- 238 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCH-HH-HHHHH----------
Confidence 99999999999999888765 799999998887777655444 45676642111110 00 00000
Q ss_pred HHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHHHHH
Q 016431 154 IEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVV 230 (389)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~ 230 (389)
+ ..+.+.++.+.+.++++.++++..+. ..+..+......+.+..|.|.++++ .+.+... .......++
T Consensus 239 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~ 309 (465)
T TIGR00894 239 ----S-SLQGQKGSTRQSLPIKAIPKSLPVWA----IWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF 309 (465)
T ss_pred ----h-hcccccCCCCCCCCHHHHhcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHH
Confidence 0 00000111112334666666654333 3333333333456667788877754 5666544 455566788
Q ss_pred HHHHHHHHHHHHhhhchhHHHH---HHhHHHHHHHH---HHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeeccc
Q 016431 231 QVVATGVNTWLMDKAGRRLLLL---ISSSGMAASFF---LVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGV 304 (389)
Q Consensus 231 ~~~~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (389)
.+++.++.|+++||.++|+... .......++.. ...+...... ......+..+.+.. ......
T Consensus 310 ~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~-~~~~~~ 378 (465)
T TIGR00894 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS----------AAFYLTIIILTLAN-AVSSGP 378 (465)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CchHHHHHHHHHHH-HHhhhh
Confidence 8999999999999976542110 00111111111 1111000000 00011111111111 111112
Q ss_pred ccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhc----cchhhHHHHHHHHHHH
Q 016431 305 GAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWS----SGGTFLIYGIVCAFTV 366 (389)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----~~~~~~~~~~~~~~~~ 366 (389)
.+.......|..|+ .+|.+.|+.+..+.++..++|.+.|.+.+.. +...+.+.+++..+..
T Consensus 379 ~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~ 443 (465)
T TIGR00894 379 LAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCV 443 (465)
T ss_pred hhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHH
Confidence 22333445566665 7999999999999999999999999887632 2334444444444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=228.20 Aligned_cols=327 Identities=15% Similarity=0.093 Sum_probs=216.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeecc-Ccccccchhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSV 80 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~ 80 (389)
.+++++|+++||+|||++++.+..++.++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|++++++
T Consensus 56 ~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~ 135 (495)
T PRK14995 56 GMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGV 135 (495)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999998888888777765 67899999999
Q ss_pred hHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHH-HHHhcccCCchhhHhcCChhHHHHHH---------HHHh
Q 016431 81 NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSL---------QVLR 146 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~---------~~~~ 146 (389)
.....++|..+||.+++.+ +||+.|++....+++.. +..+++||+|+.. +++.|...... ....
T Consensus 136 ~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~ 213 (495)
T PRK14995 136 WAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAK 213 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999888 89999999887766654 4455678765421 11111111100 0000
Q ss_pred c-C-CcchhHHHHH----------HHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh
Q 016431 147 G-F-DTDISIEVNE----------IKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN 214 (389)
Q Consensus 147 ~-~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (389)
. . +......... .-...+.+.+++..+ .++++++.............. ......++.|.++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lq~ 288 (495)
T PRK14995 214 TALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMID-MRLFTHRIILSGVVMAMTAMI----TLVGFELLMAQELQF 288 (495)
T ss_pred hccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 0 0 0000000000 000011111122222 345665544433332222222 234455667777665
Q ss_pred -cCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHH
Q 016431 215 -AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLV 291 (389)
Q Consensus 215 -~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (389)
.|.++.+ .......++..++.++.|++.||+|+|+.+..+..+..++...+..... +.+. .....
T Consensus 289 v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-------~~~~-----~~~~~ 356 (495)
T PRK14995 289 VHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF-------STQQ-----WQAWG 356 (495)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-------CCch-----HHHHH
Confidence 5776555 5566667888999999999999999999887777776666554432100 0000 11111
Q ss_pred HhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 292 GLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
...+.+.+.+.. .+.......+..|+++++.+.++.++..++|..+|+.+.|.+.+
T Consensus 357 ~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 357 LMALLGFSAASA-LLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHhHHHH-HHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222232222 23344667788999999999999999999999999999998876
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=222.62 Aligned_cols=301 Identities=11% Similarity=0.041 Sum_probs=211.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc-----chhHHHHHHHHhhhcccccccccceeeeeccCcccccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS 76 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 76 (389)
+++++.|+++||+||||+++.+.++..++.++.++++ +++.+++.|+++|++.+...+...+++.|++|+++|++
T Consensus 49 i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (365)
T TIGR00900 49 VLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQ 128 (365)
T ss_pred HHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5689999999999999999999999999999888887 99999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcc--cCCchhhHhcCChhHHHHHHHHHhcCCc
Q 016431 77 LGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI--PESPRWLAKMGMTEDFESSLQVLRGFDT 150 (389)
Q Consensus 77 ~~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 150 (389)
++++.+.+.++|.+++|.+++.+ +||+.|++.++..++..+..+.+ ||+++ +++.+.
T Consensus 129 ~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------- 191 (365)
T TIGR00900 129 ANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA----SEIQAL------------- 191 (365)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC----cccccc-------------
Confidence 99999999999999999998887 89999998877666654444333 33221 000000
Q ss_pred chhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHH
Q 016431 151 DISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGL 227 (389)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~ 227 (389)
+. +. .++..+..++.++++..+.......+..... ......+.|.+.++ .+.+..+ ......
T Consensus 192 --~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (365)
T TIGR00900 192 --SN---AV-------LRDTREGIKFVLKNPLLRTLLLLALLFNLVF---APAIVALFPYVQSKYLGRGSTHYGWVLAAF 256 (365)
T ss_pred --ch---hH-------HHHHHhHHHHHHcCcHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHhCCchHHHHHHHHHH
Confidence 00 00 0001123445556555444433333332221 11222555666654 5665544 455556
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccc
Q 016431 228 GVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAI 307 (389)
Q Consensus 228 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (389)
.++.+++.++.+++.||.+||+....+..+..++...+.... .+.............+. ....+.
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~-~~~~~~ 321 (365)
T TIGR00900 257 GLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP--------------PNFPLFLVLWFAIGVGY-GPINVP 321 (365)
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc--------------hhHHHHHHHHHHHHHHH-HHHHHH
Confidence 788889999999999999999988777666555555444210 00111122222222222 223455
Q ss_pred hhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 308 PWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
..++..|..|+++|+++.|+.+...+++..++|.+.|.+.|.
T Consensus 322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 322 QGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999999999999999998873
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=223.17 Aligned_cols=347 Identities=14% Similarity=0.136 Sum_probs=214.2
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc----cchhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
+++++.|+++||+|||+.+..+.++.+++.++.++. ++++.+.+.|++.|++.+...+.....+.|++|+++|+++
T Consensus 76 ~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~ 155 (438)
T TIGR00712 76 FSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTI 155 (438)
T ss_pred HhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhH
Confidence 578999999999999999999999999999888765 4677888999999999999988888999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcc
Q 016431 78 GSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTD 151 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
+++.+.+.++|..+++.+.+.. +||+.|++.++.+++. ++.++++||+|+....++. ++. +.+.++
T Consensus 156 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~ 227 (438)
T TIGR00712 156 VSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPI-EEY-------RNDYPD 227 (438)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCc-hhc-------cccccc
Confidence 9999999999998887665432 8999999988877665 4556667887753211100 000 000000
Q ss_pred hhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHHH
Q 016431 152 ISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLG 228 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 228 (389)
.. .++.+.+.+.+....+..++++..+.......+.. ...+....+.|.++++ .|.+... .......
T Consensus 228 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~ 297 (438)
T TIGR00712 228 DY------NEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVY----LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYE 297 (438)
T ss_pred cc------ccccccccchHHHHHHHHccCchHHHHHHHHHHHH----HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHH
Confidence 00 00000000000011123444444433323222222 2234556677877765 4666544 4556667
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccch
Q 016431 229 VVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIP 308 (389)
Q Consensus 229 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (389)
+..+++.++.+++.||+++++....+.............. ..... . +. . ............ ..+.....
T Consensus 298 ~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~-~~--~---~~~~~~~~~g~~-~~~~~~~~ 366 (438)
T TIGR00712 298 YAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVY-WMNPA---G-NP--L---VDMICMIVIGFL-IYGPVMLI 366 (438)
T ss_pred HHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHH-HhcCC---C-ch--H---HHHHHHHHHHHH-HccHHHHH
Confidence 8889999999999999965432222322222111111111 11000 0 00 1 111111111111 11111122
Q ss_pred hhhhccccccchhhhhhhHHHHHHHHHH-HHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCC
Q 016431 309 WVIMSEILPVNIKSLAGSVATLANWLVS-WIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETK 377 (389)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
.....|.+|++.|+++.|+.+...++++ .++|.+.|.+.| .++...+.+..++..+..+......+|+|
T Consensus 367 ~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 367 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2457799999999999999999888874 689999999998 45555666666666666666666666654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=218.44 Aligned_cols=310 Identities=11% Similarity=0.099 Sum_probs=205.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|++.||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++..
T Consensus 57 i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 136 (394)
T PRK03699 57 ISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFT 136 (394)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+...++|..++|.+.+.+ +||+.|.+.++..++..+..++ ++.|+. .+++ .
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~-~~~~-~--------------------- 192 (394)
T PRK03699 137 DSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL-GKHA-P--------------------- 192 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc-cccC-c---------------------
Confidence 888888888888776543 8999999887766665444332 232210 0000 0
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~ 233 (389)
+++++.. ++ . +.+..+...+..+...........+.|.+.+ +.|.+..+ .......++..+
T Consensus 193 -------~~~~~~~----~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~i 256 (394)
T PRK03699 193 -------KADKPVA----KE----K-WGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMV 256 (394)
T ss_pred -------cccCccc----cc----c-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHH
Confidence 0000000 00 0 0111122222222222224456677887775 45776554 445556778899
Q ss_pred HHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhc
Q 016431 234 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 313 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (389)
++++.+++.||+++|+.+.....+..+...++... .+ ...........+. ...+..+...++..
T Consensus 257 g~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~~G~-~~~~~~~~~~~~~~ 320 (394)
T PRK03699 257 GMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT---DD------------PSHLLYAILGLGF-FSSAIYTTIITLGS 320 (394)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc---CC------------chHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999988776665554443333210 00 0111111111111 11223344445666
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHH
Q 016431 314 EILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAF 368 (389)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~ 368 (389)
|..|. .++...|......++|..++|.+.|.+.| .+....++..+++..+....
T Consensus 321 ~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 321 QQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 66654 46677888888999999999999999998 56555666555555544333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-29 Score=222.00 Aligned_cols=319 Identities=16% Similarity=0.124 Sum_probs=204.9
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.
T Consensus 45 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 124 (379)
T TIGR00881 45 ISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFW 124 (379)
T ss_pred hhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeeh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-Hhcccc----chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHH
Q 016431 82 QLSVTIGIMLAY-LLGLFV----NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIE 155 (389)
Q Consensus 82 ~~~~~lG~~l~~-~i~~~~----~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
+.+..+|..+++ .++..+ +||+.|++.+++.++. ++..++.||+|+....++++++. +++.+
T Consensus 125 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-- 192 (379)
T TIGR00881 125 NCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMP----------NEEPD-- 192 (379)
T ss_pred hccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCc----------ccccc--
Confidence 999999999998 354433 8999999888766654 45555677776421111100000 00000
Q ss_pred HHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHHHHHHHHHH
Q 016431 156 VNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQV 232 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~ 232 (389)
+.+++.+++.+..+...++.++++..+...+...+... .......+.|.+.+ +.+.+..+ .......++.+
T Consensus 193 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 266 (379)
T TIGR00881 193 --GDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYV----VRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGL 266 (379)
T ss_pred --cccccccccccchHHHHHHHHhcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence 00000001111112234455555544433333322222 23345556666654 45766554 45556678889
Q ss_pred HHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhh
Q 016431 233 VATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 312 (389)
Q Consensus 233 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
++.++.+++.||..+++...............+........ .............. .+..+..+....+.
T Consensus 267 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g-~~~~~~~~~~~~~~ 335 (379)
T TIGR00881 267 VGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPA----------ANPLMDLICLFALG-FLVYGPQMLIGVIA 335 (379)
T ss_pred hhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcc----------hhHHHHHHHHHHHH-HHHhhhhHHHHHHH
Confidence 99999999999864332222221111111111111100000 00111111111111 11223334445778
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 313 SEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
.|.+|++.|+++.|+.+....+|..++|.+.|.+.|.
T Consensus 336 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 372 (379)
T TIGR00881 336 SELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG 372 (379)
T ss_pred HHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence 8999999999999999999999999999999999984
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=217.30 Aligned_cols=319 Identities=14% Similarity=0.031 Sum_probs=209.4
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++.
T Consensus 69 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (408)
T PRK09874 69 IASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTL 147 (408)
T ss_pred HHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHH
Confidence 567899999999999999999999999999999999999999999999999765 4677778889999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHH-HHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
..+..+|..++|.+++.+ +||+.|++.++..++..+ ..+++||+++... +.+ .
T Consensus 148 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~ 205 (408)
T PRK09874 148 STGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVS---KKE-------------------M 205 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCccccc---chh-------------------h
Confidence 999999999999998876 899999988877666544 3445666532100 000 0
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc------HHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN------VATFGLGVV 230 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 230 (389)
.+ ..+..+..+++..........+.... .......+.+.+..+.+.+... ......+++
T Consensus 206 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 270 (408)
T PRK09874 206 LH------------MREVVTSLKNPKLVLSLFVTTLIIQV---ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVA 270 (408)
T ss_pred hH------------HHHHHHhCcCCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 00 00011122333222211111111111 1122233334444443222221 222334567
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhh
Q 016431 231 QVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWV 310 (389)
Q Consensus 231 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (389)
.+++.+..+++.||++||+.+..+.....++.+..... ...+.......+.+.+. ....+...+
T Consensus 271 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~-~~~~~~~~~ 334 (408)
T PRK09874 271 ALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV---------------QTPLQLGILRFLLGAAD-GALLPAVQT 334 (408)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHhhh-HhhHHHHHH
Confidence 77888899999999999998887776665554443321 00111112212222221 223444556
Q ss_pred hhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcc
Q 016431 311 IMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVP 374 (389)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (389)
...+..|++.+++.+++.+....+|..++|.+.|.+.+ .++...+...+++.++..++.....+
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 335 LLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788899999999999999999999999999999988 56666666666666655555544443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=215.57 Aligned_cols=321 Identities=15% Similarity=0.070 Sum_probs=205.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+.+++.|+++||+||||+++.+.++.++++++++++++. ++.|+++|++.+...|...+++.|++|+++|++++++.
T Consensus 53 l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~ 129 (393)
T PRK11195 53 VLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWM 129 (393)
T ss_pred HHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 468999999999999999999999999999888777664 77999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc---chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNE 158 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~---~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
+...++|.++||.+++.+ .|+..+.+.+...++..+..+.+||+|+....+ .++.... ..+
T Consensus 130 ~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~--------------~~~ 193 (393)
T PRK11195 130 EGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGARRPGQ--SWNPIAL--------------LRD 193 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc--CCCHHHH--------------HHH
Confidence 999999999999999988 455555555544444455556788875321100 0000000 000
Q ss_pred HHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHHHHHHHHHHHHH
Q 016431 159 IKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVAT 235 (389)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~ 235 (389)
.....+.+++++..+.......+..... ....+..+.+.+ ..|.++.+ ......+++.++++
T Consensus 194 -----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~ 258 (393)
T PRK11195 194 -----------FFHACRVLWRDKLGRFSLAGTTLFWGAG----ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGA 258 (393)
T ss_pred -----------HHHHHHHHHhCchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Confidence 0111234555555444333332222221 222233333333 24665555 55566678889999
Q ss_pred HHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccc
Q 016431 236 GVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEI 315 (389)
Q Consensus 236 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (389)
+..+++.||.++++.+..+.. ..+....+... ...+.......+.+.+.+....+ ..+...|.
T Consensus 259 ~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~---------------~~~~~~~~~~~~~G~~~g~~~~~-~~~~~q~~ 321 (393)
T PRK11195 259 GAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ---------------HSLLPAYPLLILIGALGGFFVVP-MNALLQHR 321 (393)
T ss_pred HHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH---------------hHHHHHHHHHHHHHHhhhhhhhh-HHHHHHhh
Confidence 999999999888877666542 22222222210 11111122222222222222233 34666777
Q ss_pred cccch-hhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHHHHHHhhc
Q 016431 316 LPVNI-KSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWV 373 (389)
Q Consensus 316 ~~~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (389)
.|++. +|++.++.+..++++..++..+.+.+...+-...+.+.+....+...+...+.
T Consensus 322 ~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 322 GHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred CcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66654 79999999999999999999999977666665555554444444444444433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=216.47 Aligned_cols=317 Identities=15% Similarity=0.152 Sum_probs=210.2
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+||||++..+..+.+++.+.+.++++++.+++.|+++|++.+...+...+.+.|++|+++|.+..++.
T Consensus 63 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 142 (406)
T PRK15402 63 FLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALM 142 (406)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999988888899999999999999999998
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
.....+|..++|.+++.+ +||+.|++.++..++..+. ....||+++...+ ..
T Consensus 143 ~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------- 199 (406)
T PRK15402 143 ANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGE---KL-------------------- 199 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccc---cc--------------------
Confidence 888888888998887765 8999999888777666443 4456776431000 00
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHH-hhcCCCCcc--HHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~ 233 (389)
+.++...++++.++++..+.......+.... ......+.|.++ ++.+.++.+ .......++.++
T Consensus 200 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~ 266 (406)
T PRK15402 200 ---------SLKELGRDYKLVLKNRRFVAGALALGLVSLP----LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIA 266 (406)
T ss_pred ---------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 0000112234555555444333332222221 122333445544 345666544 333344567788
Q ss_pred HHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhc
Q 016431 234 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 313 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (389)
+.++.+++.||+++|+.+..+..+..++..++........ ...........+...+.+.. .+.......
T Consensus 267 g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~~~~g~g~~~~-~~~~~~~~~ 335 (406)
T PRK15402 267 GNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISS----------HAYLWLTAGLSLYAFGIGLA-NAGLYRLTL 335 (406)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHccc----------ccHHHHHHHHHHHHHHHHHH-hhhHHHHHh
Confidence 9999999999999999888887776666665554321110 00111122222222222211 222223333
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHH
Q 016431 314 EILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTV 366 (389)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 366 (389)
..+++++++..+..+..+.++..+|+.+.+.+.+......+....+++.+..
T Consensus 336 -~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 336 -FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred -hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 3345889999999999999999999999999988544444444444333333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=210.65 Aligned_cols=301 Identities=15% Similarity=0.098 Sum_probs=201.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++.++++.++++++|++.+++.|+++|++.+...+...+.+.|..++++|+++++..
T Consensus 56 ~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (381)
T PRK03633 56 VGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAY 135 (381)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999998888888888899999999999999
Q ss_pred HHHHHHHHHHHHHhcccc-c--hHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV-N--WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNE 158 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~-~--wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
+.+.++|..+||.+++.+ . ++...+..+........ ..+.+.+|+. .
T Consensus 136 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~------------------------- 185 (381)
T PRK03633 136 MMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLAAILP-LLFTRILNQQ----A------------------------- 185 (381)
T ss_pred HHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHH-HHHhcccCCC----C-------------------------
Confidence 999999999999999887 1 22223322222221111 1121211110 0
Q ss_pred HHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHH
Q 016431 159 IKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATG 236 (389)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 236 (389)
+ + ++..+.++.++++..+............ +.....+.|.+.++.|.+... .......+..+++++
T Consensus 186 -----~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 253 (381)
T PRK03633 186 -----E--N-HDSTSIWPMLKLRQARLGVNGCIISGIV----LGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQW 253 (381)
T ss_pred -----C--C-CCCCCHHHHHHhcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 0011233445555444322222222111 223344567777777776544 444556678889999
Q ss_pred HHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhcccc
Q 016431 237 VNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEIL 316 (389)
Q Consensus 237 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (389)
..+++.||+++|+.+..+.....++...+.. . ....... .+...+ .....|...+...|..
T Consensus 254 ~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~------~---------~~~~~~~---~l~g~~-~~~~~p~~~~~~~~~~ 314 (381)
T PRK03633 254 PIGRLADRFGRLLVLRVQVFVVILGSIAMLS------Q---------AAMAPAL---FILGAA-GFTLYPVAMAWACEKV 314 (381)
T ss_pred hhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh------h---------HHHHHHH---HHHHHH-HHhHHHHHHHHHHccC
Confidence 9999999999999887776666655443320 0 0001111 111111 2234566668888999
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHH
Q 016431 317 PVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCA 363 (389)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~ 363 (389)
|+++++...+..+...++|..++|.+.|.+.| .+....+...+.+..
T Consensus 315 ~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l 362 (381)
T PRK03633 315 EHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSF 362 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 98888888888888899999999999999998 444444555444443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=212.77 Aligned_cols=314 Identities=13% Similarity=0.124 Sum_probs=199.6
Q ss_pred chhhchHHHHhhhhhhhHHH-HhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccch--h
Q 016431 2 VGAIASGQIAEYIGRKGSLM-IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL--G 78 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~ 78 (389)
+.+++.|+++||+||||.++ .+..+..++.+++++++|++.+++.|++.|.+.+...|...++..|+.|+++|++. .
T Consensus 48 ~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 127 (375)
T TIGR00899 48 AVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFS 127 (375)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHH
Confidence 46789999999999988765 46666677888899999999999999999988888888888888898887777654 5
Q ss_pred hhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHH-HHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchh
Q 016431 79 SVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDIS 153 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (389)
+....+.++|..++|.+++.+ +||+.|++.++..++..+ .++++||+|++..++.
T Consensus 128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 187 (375)
T TIGR00899 128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL-------------------- 187 (375)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc--------------------
Confidence 777788889999998888766 899999998887766644 4455888764210000
Q ss_pred HHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHH-hhcCCCCcc--HHHHHHHHH
Q 016431 154 IEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VATFGLGVV 230 (389)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~ 230 (389)
...+.++.++++..+.......+.... ......+.|.+. ++.+.++.+ .........
T Consensus 188 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 247 (375)
T TIGR00899 188 ----------------TRLEVRGLLASRDTRLLFVACTLMWGC----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGL 247 (375)
T ss_pred ----------------CcchhhhhhcCcchHHHHHHHHHHHHH----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 000112233344433333322222221 122233344444 445766554 233333455
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhh
Q 016431 231 QVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWV 310 (389)
Q Consensus 231 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (389)
.+++.++.+++.||++||+.+..+.....+....+... ...+.......+...+.+ ...+....
T Consensus 248 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~g-~~~~~~~~ 311 (375)
T TIGR00899 248 EIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD---------------NSLWALLMLQLLNAIFIG-ILAGIGML 311 (375)
T ss_pred HHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 67788899999999999998777655444433222210 011111111111111111 22345557
Q ss_pred hhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh-ccchhhHHHHHHHHHHHHHHHhhc
Q 016431 311 IMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW-SSGGTFLIYGIVCAFTVAFVSLWV 373 (389)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 373 (389)
+..|..|++ ++++.++.+...++|..++|.+.|.+.+. ++...+.+.++... .+.+.....
T Consensus 312 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 373 (375)
T TIGR00899 312 YFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLI-VALFCLLLI 373 (375)
T ss_pred HHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH-HHHHHHhee
Confidence 778888765 67999999999999999999999999884 44445555544443 333334433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-28 Score=214.87 Aligned_cols=291 Identities=12% Similarity=0.133 Sum_probs=196.5
Q ss_pred hhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhH
Q 016431 3 GAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 82 (389)
Q Consensus 3 g~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 82 (389)
.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++..
T Consensus 62 ~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 141 (400)
T PRK11646 62 LGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLM 141 (400)
T ss_pred HHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccc---chHHHHHhhhHHHHHHH-HHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHHH
Q 016431 83 LSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNE 158 (389)
Q Consensus 83 ~~~~lG~~l~~~i~~~~---~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
...++|..+||.+++.+ +||+.|++.++..++.. +..++.||.++ ++.
T Consensus 142 ~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~~----------------------- 193 (400)
T PRK11646 142 MQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----STV----------------------- 193 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----ccc-----------------------
Confidence 99999999999999887 99999998877666553 33444554311 000
Q ss_pred HHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHH
Q 016431 159 IKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATG 236 (389)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 236 (389)
+++.+..+++.++++............... ......+.|.+.++.+.++.. .......+....+..
T Consensus 194 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 261 (400)
T PRK11646 194 --------RTPVREGMTRVLRDKRFVTYVLTLTGYYML----AVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLY 261 (400)
T ss_pred --------chhhHHHHHHHHcCchHHHHHHHHHHHHHH----HHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHH
Confidence 000112344555555443322222211111 122334567766665444433 223333444444444
Q ss_pred HHHHHHh-hhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccc
Q 016431 237 VNTWLMD-KAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEI 315 (389)
Q Consensus 237 ~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (389)
..+++.| |.+.++.+..+..+..++..++... ...............+. ....|...++..|.
T Consensus 262 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~~~l~~~g~-~~~~p~~~~~~~~~ 325 (400)
T PRK11646 262 PIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---------------SNLQQLFTLICLFYIGS-IIAEPARETLSASL 325 (400)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHHHH-HHHHccHHHHHHhc
Confidence 4455554 4565666666666656555444321 00111111111111121 12335556888899
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 316 LPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
.|+++|+++.|+.+....+|..++|.+.|.+.|.
T Consensus 326 ~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 326 ADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred CCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 9999999999999999999999999999999984
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=213.39 Aligned_cols=316 Identities=16% Similarity=0.177 Sum_probs=210.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.
T Consensus 55 ~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (385)
T TIGR00710 55 AGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSIL 134 (385)
T ss_pred HHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHH-HHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+....+|..+++.+++.+ +||+.|++.++..++..+ ..+..||+++.. ++ +
T Consensus 135 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-------------------- 190 (385)
T TIGR00710 135 MPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE---AR-I-------------------- 190 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---cc-C--------------------
Confidence 999999999999988876 899999988776666543 344567664310 00 0
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~ 233 (389)
+.++.....++.++++..+........... .......+.|.+.+ +.+.++.. .......++.++
T Consensus 191 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 257 (385)
T TIGR00710 191 ---------QISTYFETFLLLLKSKMFWGYALIYGASFG----GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIF 257 (385)
T ss_pred ---------CHHHHHHHHHHHHcCchhHHHHHHHHHHHH----HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 000011123444555544433333222222 12334444555554 56766554 445556788899
Q ss_pred HHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhc
Q 016431 234 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 313 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (389)
+.++.+++.||+++|+.+..+..+..++..++........ ...............+. ....+.......
T Consensus 258 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~ 326 (385)
T TIGR00710 258 GGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGL----------GSWAMIIGPMMFVGIGN-SMISSIAMAYAL 326 (385)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcc----------chHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 9999999999999999888777666666555443211110 00011111111111111 122344456777
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHHH
Q 016431 314 EILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVA 367 (389)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 367 (389)
|..| ++++++.++.+.....++.+.+.+.+...+ .....+........+...
T Consensus 327 ~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 378 (385)
T TIGR00710 327 EDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG-NTAWPMSLSCLVLAVVSV 378 (385)
T ss_pred ccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc-cChHHHHHHHHHHHHHHH
Confidence 7776 568999999998888766666666664433 333344444444343333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=225.97 Aligned_cols=328 Identities=17% Similarity=0.214 Sum_probs=217.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
++.++.|+++||+|||++++.+.++..++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|+++++++
T Consensus 52 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 131 (485)
T TIGR00711 52 ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIW 131 (485)
T ss_pred HHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHH-HHhcccCCchhhHhcCChhHHHHHH--------H-HH-h
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSL--------Q-VL-R 146 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~--------~-~~-~ 146 (389)
..+..+|..++|.+++.+ +||+.|++.++.+++..+ ..++.||+++. .+++.|...... . .. .
T Consensus 132 ~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~ 209 (485)
T TIGR00711 132 GLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSE 209 (485)
T ss_pred HHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998877 899999998877766644 34456665431 112222111100 0 00 0
Q ss_pred cCCcc--hhHHHHHH----------HHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh
Q 016431 147 GFDTD--ISIEVNEI----------KRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN 214 (389)
Q Consensus 147 ~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (389)
+...+ .+...... ....+.+.+++..+ .+.++++......+...+.... +.....+.|.++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~ 284 (485)
T TIGR00711 210 GPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVD-LRLFKYRNFTIGCVYMSLLGLG----LYGSFYLLPLYLQQ 284 (485)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccC-HHHHcCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 11000 00000000 00011111111122 2455555544443333333222 34455666777665
Q ss_pred -cCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHH
Q 016431 215 -AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLV 291 (389)
Q Consensus 215 -~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (389)
.|.++.+ .......++.+++.++.|++.||++||+.+..+..+..++..++.... .++.+. .....
T Consensus 285 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~-----~~~~~ 353 (485)
T TIGR00711 285 VLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF------TPDTPF-----LAIAL 353 (485)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC------CCCCCH-----HHHHH
Confidence 5766554 455556788899999999999999999988887777666655544210 011111 11111
Q ss_pred HhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 292 GLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
...+.+.+.+....+. .....+..|+++++++.|+.+..+.+|+.+++.+.+.+.+
T Consensus 354 ~~~l~g~g~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 354 PQFIRGFGMGCFFMPL-TTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222222233 3556677899999999999999999999999999999887
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=209.61 Aligned_cols=334 Identities=15% Similarity=0.238 Sum_probs=228.0
Q ss_pred CchhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc--chhHHHHHHHHhhhcccccccccceeeeeccCcccccchh
Q 016431 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLG 78 (389)
Q Consensus 1 lig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 78 (389)
++++++.|+++||+|-|+++..+.++.++++++...+. +++.+++.|++||++.|..+|+...+..+|.|++||++..
T Consensus 87 i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ 166 (466)
T KOG2532|consen 87 ILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFI 166 (466)
T ss_pred HHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHH
Confidence 36789999999999999999999999999999999885 5567899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHHHh-cccCCchhhHhcCChhHHHHHHHHHhcCCcch
Q 016431 79 SVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDI 152 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (389)
++...+..+|.+++.++++++ ||+++|++.++.+++..++++ +..|+|+....-.
T Consensus 167 ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is------------------- 227 (466)
T KOG2532|consen 167 AILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNIS------------------- 227 (466)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC-------------------
Confidence 999999999999998888876 899999999999988866654 5667775211110
Q ss_pred hHHHHHHHHHhhhc--cccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCC--CccHHHHHH
Q 016431 153 SIEVNEIKRSVASS--SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGIS--SSNVATFGL 227 (389)
Q Consensus 153 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~ 227 (389)
+.|.+..++...++ +++.+.+++++++++. +++..+..+.....+..+..|.|.++++ ++++ +......+.
T Consensus 228 ~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~----vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP 303 (466)
T KOG2532|consen 228 EKELKYIEKGKSEAHVKKKPPVPYKAILTSPP----VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALP 303 (466)
T ss_pred HHHHHHHHhcccccccCCCCCCCHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHH
Confidence 11111222211111 1225778999999876 4444455555555577888899998885 4555 333777788
Q ss_pred HHHHHHHHHHHHHHHhhhchh---------HHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheee
Q 016431 228 GVVQVVATGVNTWLMDKAGRR---------LLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVI 298 (389)
Q Consensus 228 ~~~~~~~~~~~g~l~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (389)
.+...+..+++|.++||+.+| ..-.++....+++++.++ +.+++.. .. ......+.....
T Consensus 304 ~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~-------~~~~~~~---~~-a~~~l~~~~~~~ 372 (466)
T KOG2532|consen 304 FLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLA-------FTSDEHR---LL-AVILLTIAIGLS 372 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeee-------ecCCCcc---hH-HHHHHHHHHHHc
Confidence 899999999999999998652 112222222222222222 2222111 01 111111111111
Q ss_pred eeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh----hccchhhHHHHHHHHHHHHHHHhh
Q 016431 299 SFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD----WSSGGTFLIYGIVCAFTVAFVSLW 372 (389)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ 372 (389)
++.. +-.+.-..+. .+++.+..+|+.+....+.+.++|.+.|.+.. ..+...|++.+++..+..++..++
T Consensus 373 g~~~---~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 373 GFNI---SGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred ccch---hhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 1111 1111222222 56778999999999999999999999999984 234455666666666555444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=217.46 Aligned_cols=326 Identities=18% Similarity=0.138 Sum_probs=214.2
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
++++++|+++||+|||++++.+..+.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.
T Consensus 60 ~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (471)
T PRK10504 60 VMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFV 139 (471)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhHHHHHHH------H---Hhc
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQ------V---LRG 147 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~------~---~~~ 147 (389)
....++|..++|.+++.+ +||+.|.+......+..+. ....|+++. .+.+.+....... . ..+
T Consensus 140 ~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~ 216 (471)
T PRK10504 140 TLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDG 216 (471)
T ss_pred HHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998876 8999999887766655443 334455432 1112222111100 0 001
Q ss_pred CCcch-hH-HHHH----------HHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-
Q 016431 148 FDTDI-SI-EVNE----------IKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN- 214 (389)
Q Consensus 148 ~~~~~-~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 214 (389)
.+... .. .... ....++.+.+++..+. ++++++.+.......++.... ......+.|++++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~ 291 (471)
T PRK10504 217 SKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTFSLGLAGSFAGRIG----SGMLPFMTPVFLQIG 291 (471)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 00000 00 0000 0000111111222223 356666655444433333322 33445566766663
Q ss_pred cCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHH
Q 016431 215 AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVG 292 (389)
Q Consensus 215 ~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (389)
.|.++.. .......++.+++.++.+++.||+++|+.+..+..+..+...++.... .. . + .......
T Consensus 292 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------~~-~---~-~~~~~~~ 359 (471)
T PRK10504 292 LGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA-------LL-G---W-YYLLPFV 359 (471)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc-------cc-c---c-HHHHHHH
Confidence 5665444 444555667777889999999999999998888776666655444210 00 0 0 0111111
Q ss_pred hhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 293 LVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
....+.+.+. ..+....+..+..|++.++.++|+.++...+|..+++.+.|.+.+
T Consensus 360 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 360 LFLQGMVNST-RFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112121 223344777788999999999999999999999999999999887
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=207.52 Aligned_cols=289 Identities=25% Similarity=0.343 Sum_probs=223.3
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+.+..+..+..++.+...++++++.+++.|++.|++.+...+...+++.|++|+|+|++.+++.
T Consensus 49 ~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (352)
T cd06174 49 LGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLF 128 (352)
T ss_pred HHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 157 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (389)
+...++|..++|.+++.+ +||+.+++.++..++..+...+.+
T Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 174 (352)
T cd06174 129 SAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL---------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------------------------------
Confidence 999999999999999887 799999988887776655544332
Q ss_pred HHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhc-CCCCcc--HHHHHHHHHHHHH
Q 016431 158 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVA 234 (389)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~ 234 (389)
+..+...+..+...........+.+.+.++. +.++.+ .......++..++
T Consensus 175 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 227 (352)
T cd06174 175 ---------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILG 227 (352)
T ss_pred ---------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 0112222222233333456666777777664 665544 5566678889999
Q ss_pred HHHHHHHHhhhchhH-HHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhc
Q 016431 235 TGVNTWLMDKAGRRL-LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 313 (389)
Q Consensus 235 ~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (389)
.++.+++.||++||+ .+..+..+..++........ ..........+...+ .....+....+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~ 291 (352)
T cd06174 228 ALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP---------------SLALLLVALLLLGFG-LGFAFPALLTLAS 291 (352)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc---------------cHHHHHHHHHHHHHH-HhccchhHHHHHH
Confidence 999999999999999 88888877777766665321 011122222222222 2334566679999
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHH
Q 016431 314 EILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVA 367 (389)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~ 367 (389)
|..|+++|++.+|+.+...+++..++|.+.+.+.+ .+....+.+.+++..+..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i 346 (352)
T cd06174 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346 (352)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997 5555566666665555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-27 Score=210.19 Aligned_cols=288 Identities=20% Similarity=0.223 Sum_probs=188.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+.+..+.++..++.+++..+++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.
T Consensus 53 ~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 132 (392)
T PRK10473 53 AAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLL 132 (392)
T ss_pred HHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHH-HHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+....+|..++|.+++.+ +||+.|++.++..++.. +....+||+++.. ++.+
T Consensus 133 ~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~-------------------- 189 (392)
T PRK10473 133 NGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPAR---APAA-------------------- 189 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc---cCCc--------------------
Confidence 999999999999888765 89999998887666653 3445667764210 0000
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHH-hhcCCCCcc--HHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~ 233 (389)
.+.....++.++++..........+.... ......+.|.+. ++.|.++.. .......+..++
T Consensus 190 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~ 254 (392)
T PRK10473 190 -----------SSKPRENSESLLNRFFLSRLVITTLSVTV----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMT 254 (392)
T ss_pred -----------cchHHHHHHHHhCHHHHHHHHHHHHHHHH----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 00001112233333332222222221111 112223334443 345776544 444556788889
Q ss_pred HHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhc
Q 016431 234 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 313 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (389)
+.++.+++.||++||+....+..+..++...+..... .............+++.+... ....
T Consensus 255 ~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~~~g~~~~~~~---~~~~ 316 (392)
T PRK10473 255 VSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS---------------HAVSLFGITLICAGFSVGFGV---AMSQ 316 (392)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhHH---HHHH
Confidence 9999999999999999988887776666655543210 011111111112222222111 3334
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 314 EILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
+..|.++|+ |.......++..+++.+.+++.+
T Consensus 317 ~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 317 ALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred HhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554443 44445556667777777777776
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=211.03 Aligned_cols=322 Identities=15% Similarity=0.092 Sum_probs=201.4
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHH---h-ccchhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F-SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
+++++.|+++||+||||++..+..+.+++++++. . .++++.+++.|++.|++.+...+...+.+.|++|+++|+++
T Consensus 63 i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~ 142 (402)
T TIGR00897 63 ISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSA 142 (402)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHH
Confidence 5789999999999999999999999999877653 3 35788889999999999988888888888999999999999
Q ss_pred hhhhHHHHHHHH-HHHHHhcccc----chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcc
Q 016431 78 GSVNQLSVTIGI-MLAYLLGLFV----NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTD 151 (389)
Q Consensus 78 ~~~~~~~~~lG~-~l~~~i~~~~----~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
+++.+.+.++|. +++|.+++.+ ||+..++.......+. .+..++.+|.++.. ++++++
T Consensus 143 ~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------- 206 (402)
T TIGR00897 143 VGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQ-HMQTRE--------------- 206 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCcc-cccCCc---------------
Confidence 999999999997 5788887654 7665555443332222 22333344432100 000000
Q ss_pred hhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHH
Q 016431 152 ISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGV 229 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 229 (389)
+.++....++++++++..+....... ...........+.|.+.++.|.+..+ .......+
T Consensus 207 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~ 268 (402)
T TIGR00897 207 --------------KFSELGKAATILFTNPNVLLGGMVRI----INTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFF 268 (402)
T ss_pred --------------chhhHHHHHHHHHcChhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 00000112345556554433322222 22223455667788888888877665 33445678
Q ss_pred HHHHHHHHHHHHHhhhchhHHHH-HHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccch
Q 016431 230 VQVVATGVNTWLMDKAGRRLLLL-ISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIP 308 (389)
Q Consensus 230 ~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (389)
+..++.+..|++.||++||+... .+.....++...+......... ............+.+.+ ...+.
T Consensus 269 ~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~G~~~~-~~~~~- 336 (402)
T TIGR00897 269 TNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGH----------SFAVALIIAIALGIFLA-GYVPL- 336 (402)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCC----------cHHHHHHHHHHHHHHHH-HHHHH-
Confidence 88999999999999999887653 2222222222222211000000 00111111111111111 12233
Q ss_pred hhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHH
Q 016431 309 WVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVS 370 (389)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
.....|.. +++|+++.|+.+...+++..++|.+.|.+.| .+....+++.+++..+..++..
T Consensus 337 ~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 337 AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 24556654 5689999999999999999999999999999 5656666666665555444433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-27 Score=210.26 Aligned_cols=296 Identities=16% Similarity=0.141 Sum_probs=201.3
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|+++|++.+...+...+++.|++|++++++..+..
T Consensus 56 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (401)
T PRK11043 56 LGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATI 135 (401)
T ss_pred HHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999998888888888999999999999999988
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 157 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (389)
.....+|..++|.+++.+ +||+.|++.++..++..+..++++|+++. ++
T Consensus 136 ~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------------------- 188 (401)
T PRK11043 136 MPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKA----RK----------------------- 188 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cc-----------------------
Confidence 888888888888888776 99999998887777765555556655320 00
Q ss_pred HHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHH
Q 016431 158 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVAT 235 (389)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 235 (389)
+++++.++++.++++..+........... .+.....+.|.+.++.|.+... .......++.+++.
T Consensus 189 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~ 255 (401)
T PRK11043 189 ---------QSQDALTFKQLLKSKTYLGNVLIFAACSA----AFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGG 255 (401)
T ss_pred ---------cchHHHHHHHHHcChhHHHHHHHHHHHHH----HHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 00011233445554443332222222111 1233445567777777776554 33344467778889
Q ss_pred HHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccc
Q 016431 236 GVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEI 315 (389)
Q Consensus 236 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (389)
...+++.||+++|+..........++...+......... ..............+. ....+.......|.
T Consensus 256 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 324 (401)
T PRK11043 256 YGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHP----------SLVPLLIPFCVMAAAN-GAIYPIVVAQALRP 324 (401)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccC----------cHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Confidence 999999999999887655555544443332221111100 0111111111112221 23334444556666
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 316 LPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
.| ++++++.|+.+..+..++..++.+.|.+.+.
T Consensus 325 ~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 325 FP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred Cc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 65 5799999999999999999999999988773
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=207.15 Aligned_cols=318 Identities=15% Similarity=0.086 Sum_probs=207.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc-----cchhHHHHHHHHhhhcccccccccceeeeeccCcccccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS 76 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 76 (389)
++.++.|++.||+|.|+++.++.++.++.+++.+++ ++++.+++.|++.|++ +..++.....+++|+|+++||+
T Consensus 85 l~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~ 163 (462)
T PRK15034 85 LLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGS 163 (462)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHH
Confidence 356788999999999999999999999999999987 8999999999999998 6788999999999999999999
Q ss_pred hhhhhHHHHHHHHHH----HHHhcc------------------ccchHHHHHhhhHHHHHHHHHHhc-ccCCchhhHhcC
Q 016431 77 LGSVNQLSVTIGIML----AYLLGL------------------FVNWRVLAVLGVLPCTLLIPGLFF-IPESPRWLAKMG 133 (389)
Q Consensus 77 ~~~~~~~~~~lG~~l----~~~i~~------------------~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~ 133 (389)
++++.....++|..+ +|.+.. ..+||.+.++..++.++..+..++ .+|.|+
T Consensus 164 A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------ 237 (462)
T PRK15034 164 ALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS------ 237 (462)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc------
Confidence 999996666666554 444321 114888887777766666544444 443321
Q ss_pred ChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh
Q 016431 134 MTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA 213 (389)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (389)
.+....+..+.+|++..+. ..+.+++.+..+..+.++.|++.+
T Consensus 238 ---------------------------------~~~~~~~~~~vlk~~~~Wl----lslly~~tFG~fvg~s~~lp~~~~ 280 (462)
T PRK15034 238 ---------------------------------SRASIADQLPVLQRLHLWL----LSLLYLATFGSFIGFSAGFAMLAK 280 (462)
T ss_pred ---------------------------------cccCHHHHHHHhCCCchhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111223344566665433 333334455556667777777765
Q ss_pred hcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHH
Q 016431 214 NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLV 291 (389)
Q Consensus 214 ~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (389)
+ .++... .......+...+.++++|+++||+|+++.+..+.+.+.++........... .. ........
T Consensus 281 ~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~-----~~----~~~~~~~~ 350 (462)
T PRK15034 281 T-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT-----GS----GNFIAFYA 350 (462)
T ss_pred H-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc-----cc----cHHHHHHH
Confidence 5 332222 223344677888899999999999999999888877766654433221100 00 01111111
Q ss_pred Hhhheeeeeecccccchhhhhcccccc---------------------chhhhhhhHHHHHHHHHHHHHHHHhHHHhh-h
Q 016431 292 GLVTVVISFSLGVGAIPWVIMSEILPV---------------------NIKSLAGSVATLANWLVSWIVTMTANFLLD-W 349 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~ 349 (389)
.+.......+.+.. ..+-++.+.+|+ ++.|.+.|+....+.+|+++-|.+.|...+ .
T Consensus 351 ~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~ 429 (462)
T PRK15034 351 VFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT 429 (462)
T ss_pred HHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc
Confidence 11111112222222 223566666664 146788999999999999999999999888 3
Q ss_pred ccch-hhHHHHHHHHHHHHHHHhhcc
Q 016431 350 SSGG-TFLIYGIVCAFTVAFVSLWVP 374 (389)
Q Consensus 350 ~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (389)
+.+. .++.+.+...++..+.+....
T Consensus 430 g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 430 GSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4333 455555555555555555443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=211.35 Aligned_cols=316 Identities=15% Similarity=0.153 Sum_probs=202.4
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
++++++|+++||+|||++++.+.++++++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.
T Consensus 66 ~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (413)
T PRK15403 66 ALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAII 145 (413)
T ss_pred HHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999998876777778899999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
..+..+|..++|.+++.+ +||+.|++.++..++..+. ++.+||+++. +++..
T Consensus 146 ~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~-------------------- 202 (413)
T PRK15403 146 TSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPF-------------------- 202 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCC--------------------
Confidence 999999999999998876 8999999988877776544 4567887531 00000
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhc-CCCCcc--HHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~ 233 (389)
+.++....++++++++..+...+...+... .......+.|.+.++. |.+..+ ........+.++
T Consensus 203 ---------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~----~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i 269 (413)
T PRK15403 203 ---------SAKSVLRDFRNVFRNRLFLTGAATLSLSYI----PMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIV 269 (413)
T ss_pred ---------ChHHHHHHHHHHHcCHHHHHHHHHHHHHHH----HHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 000011234556666554443333322222 2334445567666654 666555 333344566677
Q ss_pred HHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhc
Q 016431 234 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 313 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (389)
+..+.+++.++..+++.......+..++..++......... ..........++..+.+.. .|......-
T Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~----------~~~~~~~~~~l~~~G~~~~-~p~~~~~al 338 (413)
T PRK15403 270 ANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPH----------VWLWSVLGTSLYAFGIGLI-FPTLFRFTL 338 (413)
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccc----------cHHHHHHHHHHHHHHHHHH-hHHHHHHHh
Confidence 77777776654444343322222333333333221111000 0111122222222222222 222222121
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHH
Q 016431 314 EILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFT 365 (389)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 365 (389)
.-....+|++.++.+.....+...++...+++.+.+...++...++++.+.
T Consensus 339 -~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 339 -FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVI 389 (413)
T ss_pred -ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 112224799999999999999999999999998877767776666555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=215.67 Aligned_cols=296 Identities=21% Similarity=0.280 Sum_probs=204.9
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++.+++.++..+++|.+.+++.|++.|++.+...+...+++.|++|+++|++++++.
T Consensus 47 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 126 (352)
T PF07690_consen 47 LFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGIL 126 (352)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccc
Confidence 57899999999999999999999999999777777788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+.+.++|.+++|.+++.+ +||+.|++.++..++..++ ..+++++|+....+++.++.
T Consensus 127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------ 188 (352)
T PF07690_consen 127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE------------------ 188 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT------------------
T ss_pred cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc------------------
Confidence 999999999999999887 8999999999888887553 34555544311111111100
Q ss_pred HHHHHHhhhccccccc-hHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHH-HhhcCCC-Ccc--HHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAI-RFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FANAGIS-SSN--VATFGLGVVQ 231 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~--~~~~~~~~~~ 231 (389)
++.+++.. .++..++++..+............ ......+.|.+ .++.+.+ ..+ .......+..
T Consensus 189 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (352)
T PF07690_consen 189 --------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFV----FSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVG 256 (352)
T ss_dssp ----------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHH
T ss_pred --------cccccccccccccccccchhhhhhhhhhHHHHH----HHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHH
Confidence 00111111 255566665554222222222222 33466667766 4556766 233 3356667888
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhh
Q 016431 232 VVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVI 311 (389)
Q Consensus 232 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (389)
+++.++.+++.||+++|+..........+....+...... ...........+.+.+ .....+....+
T Consensus 257 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~-~~~~~~~~~~~ 323 (352)
T PF07690_consen 257 IIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS------------SSPVWLIIALFLIGFG-FGIVFPILFSL 323 (352)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH------------CHHHHHHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8889999999999998777666665555554444322111 0111222222222222 22335666799
Q ss_pred hccccccchhhhhhhHHHHHHHHHHHHHH
Q 016431 312 MSEILPVNIKSLAGSVATLANWLVSWIVT 340 (389)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~ 340 (389)
..|..|+++++++.|+.+...+++..++|
T Consensus 324 ~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 324 IQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=217.14 Aligned_cols=332 Identities=13% Similarity=0.123 Sum_probs=204.0
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHH-HHHHhhhcccccccccceeeeeccCcccccchhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM-GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 80 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 80 (389)
+++++.|+++||+|||++++.+.++.++++++++++++++.+++ .|+++|++.+...+...+++.|+++ ++|+++.++
T Consensus 69 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~ 147 (455)
T TIGR00892 69 AGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGL 147 (455)
T ss_pred HhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHH
Confidence 46789999999999999999999999999999999999998865 5799999998877777788889995 789999999
Q ss_pred hHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 81 NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
.+.+..+|..++|.+++.+ |||+.|++.+++.++..+..+++.+.++... +.+.++. .+..++...+
T Consensus 148 ~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~- 218 (455)
T TIGR00892 148 AMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR-VSKSKSK-------EGLPPDGSTK- 218 (455)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc-ccccccc-------ccCCCCCccc-
Confidence 9999999999998888776 8999999988877665444443332221000 0000000 0000000000
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVA 234 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 234 (389)
+.+.....++.++..+. +.++++.++.......+... .......+.+.+.++.+.+... ......+++.+++
T Consensus 219 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~----~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 292 (455)
T TIGR00892 219 -KLSKKSTAEKINRFLDF-SLFTHRGFLVYLSGNVIMFL----GFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFA 292 (455)
T ss_pred -cccccchhhhhhhhcch-HHhcCchHHHHHHHHHHHHH----HccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 00000000000011111 34455544433332222222 2233445556666677776555 4455567888889
Q ss_pred HHHHHHHHhhh--chhHHHHHHhHHH--HHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhh
Q 016431 235 TGVNTWLMDKA--GRRLLLLISSSGM--AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWV 310 (389)
Q Consensus 235 ~~~~g~l~d~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (389)
+++.+++.||. ++|+......... .++.++... . ...........+.+.+. ....+...+
T Consensus 293 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~------------~~~~~~~i~~~~~G~~~-g~~~~~~~~ 356 (455)
T TIGR00892 293 RPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL---A------------GDYTGLVIYCIFFGLSF-GSVGALLFE 356 (455)
T ss_pred HHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH---h------------chHHHHHHHHHHHHHHh-chHHHHHHH
Confidence 99999999973 3343333322222 222222111 0 00111112222222222 233445568
Q ss_pred hhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hc-cchhhHHHHHHHHHH
Q 016431 311 IMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS-SGGTFLIYGIVCAFT 365 (389)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~-~~~~~~~~~~~~~~~ 365 (389)
...|.+|++++++..|+++....+|..++|.+.|.+.| .+ +...+.+.+++.++.
T Consensus 357 ~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 357 VLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSA 413 (455)
T ss_pred HHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHH
Confidence 88899999999999999999999999999999999988 33 444555555544433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=215.95 Aligned_cols=319 Identities=12% Similarity=0.092 Sum_probs=186.6
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|++.|++.+... ....++.|++|+++|++++++.
T Consensus 86 ~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~ 164 (476)
T PLN00028 86 FSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIA 164 (476)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHH
Confidence 578999999999999999999999999999999999999999999999999887654 4556789999999999999998
Q ss_pred HHHHHHHHHHHH----Hhcc---------ccchHHHHHhhhHHHHHHHHHHhccc-CCchhhHhcCChhHHHHHHHHHhc
Q 016431 82 QLSVTIGIMLAY----LLGL---------FVNWRVLAVLGVLPCTLLIPGLFFIP-ESPRWLAKMGMTEDFESSLQVLRG 147 (389)
Q Consensus 82 ~~~~~lG~~l~~----~i~~---------~~~wr~~f~~~~~~~~~~~~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~ 147 (389)
+...++|..+++ .+.. ..+||+.|++.++++++..+..++++ +.|+. +.++.
T Consensus 165 ~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~-----~~~~~--------- 230 (476)
T PLN00028 165 AGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG-----NYREL--------- 230 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC-----chhhH---------
Confidence 766666655553 3322 12799999998887776655545444 33320 00000
Q ss_pred CCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHH
Q 016431 148 FDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VAT 224 (389)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 224 (389)
+++.+.++.+....+++.++++..+...+..... .........+.|.++. +.|.+... ...
T Consensus 231 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~ 294 (476)
T PLN00028 231 ------------KKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYS----FGVELTMDNIIAEYFYDRFGLSLETAGAIA 294 (476)
T ss_pred ------------HhcCccccccHHHHHHHHHcCchhHHHHHHHHHH----HHHHHHHHhHHHHHHHHhcCCCHHHHHHHH
Confidence 0000000000111233444444433222222211 1112234445565554 45776544 455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhH-------HHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhhee
Q 016431 225 FGLGVVQVVATGVNTWLMDKAGRRL-------LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVV 297 (389)
Q Consensus 225 ~~~~~~~~~~~~~~g~l~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (389)
....++.++++++.|+++||++||+ .......+..+...++.. . ...........++.
T Consensus 295 ~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~----~-----------~~~~~~~~~~~l~~ 359 (476)
T PLN00028 295 ASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR----A-----------NSLGAAIVVMILFS 359 (476)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc----c-----------chHHHHHHHHHHHH
Confidence 5667889999999999999998752 111111111111111110 0 00011111111111
Q ss_pred eeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHH
Q 016431 298 ISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFV 369 (389)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~ 369 (389)
.+.. ...+..+.+..+.. ++++++..|+.+..+.+|+.++|.+.+ ..+ .++...+++.+++.++..++.
T Consensus 360 ~~~~-~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 360 IFVQ-AACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred HHHH-HhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHH
Confidence 1111 11122334555554 468999999998888888888877765 122 234455666665555544433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-27 Score=212.57 Aligned_cols=327 Identities=11% Similarity=0.091 Sum_probs=210.0
Q ss_pred chhhchHHHHhhh-----hhhhH-HHHhhHHHHHHHHHHHhc---cchhHHHHHHHHhhhcccccccccceeeeeccCcc
Q 016431 2 VGAIASGQIAEYI-----GRKGS-LMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN 72 (389)
Q Consensus 2 ig~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 72 (389)
++++++|+++||+ ||||. +..+.+..+++..++++. ++++.+.+.+++.|++.+...+...+++.|++|++
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 3578999999999 99985 667888887887777775 46788999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhc
Q 016431 73 MRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRG 147 (389)
Q Consensus 73 ~r~~~~~~~~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 147 (389)
||+++.++...+..+|.++++.++..+ |||..|++.++..++..+..++.||+++.. +++++
T Consensus 140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~---------- 206 (491)
T PRK11010 140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKT---------- 206 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccc----------
Confidence 999999999999999999988666544 899999998887777766666678865310 00000
Q ss_pred CCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHH-HHHHhhcCCCCccHHH--
Q 016431 148 FDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS-SNIFANAGISSSNVAT-- 224 (389)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 224 (389)
.+++...++++.++++..+.......+.... ......+. +++.++.|++..+...
T Consensus 207 ------------------~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~----~~~~~~~~~~~l~~~~G~s~~~~g~~~ 264 (491)
T PRK11010 207 ------------------LEQAVVAPLRDFFGRNNAWLILLLIVLYKLG----DAFAMSLTTTFLIRGVGFDAGEVGLVN 264 (491)
T ss_pred ------------------hhhhHHHHHHHHHcCcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 0000112344555555433333222222211 11222233 3334557877666322
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecc
Q 016431 225 -FGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLG 303 (389)
Q Consensus 225 -~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (389)
....++.+++.+++|++.||+++|+.+..+..+..+....+........ + .........+....++.+
T Consensus 265 ~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~------~-----~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 265 KTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDK------N-----LYSMGAAVFFENLCGGMG 333 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc------c-----HHHHHHHHHHHHHHHHHH
Confidence 2334688899999999999999988776655554444333221111100 0 011111111111111111
Q ss_pred cccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHHHHHHhhccc
Q 016431 304 VGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
. +..+++..+..+++.+++..|+.+....+|..+++.+.|.+.|..++..++.+..++.+.+++.....++
T Consensus 334 ~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 334 T-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred H-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 2335778889999999999999999999999999999999999433444444444444444444444443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=205.46 Aligned_cols=295 Identities=19% Similarity=0.232 Sum_probs=192.4
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.
T Consensus 41 ~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (377)
T PRK11102 41 IGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFV 120 (377)
T ss_pred HHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHH-HHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+....+|..++|.+++.+ +||+.|++.++..++.. +..+++||+++.. ++.+ .
T Consensus 121 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------~---- 178 (377)
T PRK11102 121 TLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKE---RRQP---------------F---- 178 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCccc---ccCC---------------C----
Confidence 999999999999988776 89999998887766653 4455677764210 0000 0
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHH-hhcCCCCcc--HHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~ 233 (389)
+.++...+.++.++++......+...+. .........+.|.++ ++.+.++.+ .......+..++
T Consensus 179 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 245 (377)
T PRK11102 179 ---------HLRTTIRNFASLFRHKRVLGYMLASGFS----FAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFV 245 (377)
T ss_pred ---------ChHHHHHHHHHHHcChHHHHHHHHHHHH----HHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 0000111233445444333222222211 111223333334433 445766554 455566788889
Q ss_pred HHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhc
Q 016431 234 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 313 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (389)
+.++.+++.||+++|+.+..+..+..+....+....... .................. ...+.......
T Consensus 246 ~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 313 (377)
T PRK11102 246 MTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD-----------LGFWALVVGVAAFVGCVS-MISSNAMAVIL 313 (377)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHH-HhhHHHHHHHh
Confidence 999999999999999988877765444332222111100 001111111111111111 12223335566
Q ss_pred cccccchhhhhhhHHHHHHH-HHHHHHHHHhH
Q 016431 314 EILPVNIKSLAGSVATLANW-LVSWIVTMTAN 344 (389)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~g 344 (389)
|..| +.++++.++.+.... ++..+++.+.+
T Consensus 314 ~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 314 DEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred cccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7666 778999998876543 55666665543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=209.19 Aligned_cols=303 Identities=13% Similarity=0.090 Sum_probs=201.2
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++.|.+.+...+...++..|..|+++|++++++.
T Consensus 58 ~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (395)
T PRK10054 58 VFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLN 137 (395)
T ss_pred HHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999887777888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc---chHHHHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 157 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~---~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (389)
....++|.+++|.+++.+ +||.+|++.++..++..+. .+++||+++. ++.+
T Consensus 138 ~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~----~~~~--------------------- 192 (395)
T PRK10054 138 YTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEKA----IATE--------------------- 192 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccccc----cccc---------------------
Confidence 999999999999999987 8999999888776666433 3445654320 0000
Q ss_pred HHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHH
Q 016431 158 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVAT 235 (389)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 235 (389)
+ + +..+.++.++++..+.......+..............+.+.. ++.+.+... ..............
T Consensus 193 --~---~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~ 261 (395)
T PRK10054 193 --T---G-----SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQ 261 (395)
T ss_pred --h---h-----hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeeh
Confidence 0 0 001123455556555444433333332211112222232222 222332222 22333334445566
Q ss_pred HHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccc
Q 016431 236 GVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEI 315 (389)
Q Consensus 236 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (389)
...+++.||.++|+.+..+..+..++...+.... ...+...........+ .....|.....+.+.
T Consensus 262 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~ 326 (395)
T PRK10054 262 YSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG--------------NSLLLWGMSAAVFTVG-EIIYAPGEYMLIDHI 326 (395)
T ss_pred hHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc--------------hHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHh
Confidence 7888999999999988877766666655443210 0011111222222222 122345556788899
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhH
Q 016431 316 LPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFL 356 (389)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 356 (389)
.|++.+++..+..+ ...+|..+||.+.|.+.|+.+...++
T Consensus 327 ~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~ 366 (395)
T PRK10054 327 APPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLF 366 (395)
T ss_pred CCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHH
Confidence 99999999988765 67789999999999999954443333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-28 Score=207.11 Aligned_cols=313 Identities=17% Similarity=0.094 Sum_probs=200.1
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+.+|+.|+++|||.||+++.+|..++.++.++++++..||++.++|.+.|+|.+...|+++++++|.+|.++|++.++++
T Consensus 83 i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~if 162 (493)
T KOG1330|consen 83 IASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIF 162 (493)
T ss_pred HHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHH
Q 016431 82 QLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIE 155 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
+.+..+|..+|.+.+..+ .|||.|+..++++++..++ .++.+|++|- ..++.. +
T Consensus 163 y~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~-------~-------- 222 (493)
T KOG1330|consen 163 YFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVD-------G-------- 222 (493)
T ss_pred hhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc-----cccccc-------c--------
Confidence 999999999999988887 5999999999988887554 5566666431 000000 0
Q ss_pred HHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHH
Q 016431 156 VNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 233 (389)
+.+...+..+..++.+.+.+.+......+......+...+.-..-+.+.++..+-.+.+... ....+...++.+
T Consensus 223 ----~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~l 298 (493)
T KOG1330|consen 223 ----ENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSL 298 (493)
T ss_pred ----CCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchh
Confidence 00000111222333444445455444444444444443333233333333333333433333 556666788899
Q ss_pred HHHHHHHHHhhhchh----HHHHHHhHHHHHHHH---HHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeeccccc
Q 016431 234 ATGVNTWLMDKAGRR----LLLLISSSGMAASFF---LVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGA 306 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (389)
|.+.+|.++||+.|+ ..........+.+.. .+......... ........+.+++.. . ......
T Consensus 299 Gvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~-----~s~~~~~il~~~g~~--~---~~~~~a 368 (493)
T KOG1330|consen 299 GVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS-----SSMIFGLILFLVGET--I---SWFNWA 368 (493)
T ss_pred hheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHH--H---Hhcccc
Confidence 999999999995331 111122111111111 11111000000 000011111111211 1 111122
Q ss_pred chhhhhccccccchhhhhhhHHHHHHHH-HHHHHHHHhHHHhh
Q 016431 307 IPWVIMSEILPVNIKSLAGSVATLANWL-VSWIVTMTANFLLD 348 (389)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~ 348 (389)
...-+..|++|++.|.++.++-.....+ |.+-+|.+.|.+.|
T Consensus 369 ~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd 411 (493)
T KOG1330|consen 369 TNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSD 411 (493)
T ss_pred cccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHH
Confidence 3336677899999999999998666654 55666669999988
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=189.41 Aligned_cols=323 Identities=16% Similarity=0.214 Sum_probs=224.5
Q ss_pred hhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchh---HHHHHHHHhhhcccccccccceeeeeccCcccccchhhh
Q 016431 4 AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS---FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 80 (389)
Q Consensus 4 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 80 (389)
-++.|.+.||||.|++..+++++..+.++..+++.+.+ ++++.+.+.|++. +.+.+....+++|+|||++|.++|+
T Consensus 66 Rl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI 144 (417)
T COG2223 66 RLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGI 144 (417)
T ss_pred HHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHH
Confidence 36789999999999999999999999999999986555 9999999999965 6678899999999999999999999
Q ss_pred hHHHHHHHHHHHH----Hhccccc---hHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcch
Q 016431 81 NQLSVTIGIMLAY----LLGLFVN---WRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI 152 (389)
Q Consensus 81 ~~~~~~lG~~l~~----~i~~~~~---wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (389)
.. ..|+|..+.. .+....+ ||....+..+..++. +..++...|.|+.....
T Consensus 145 ~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~-------------------- 203 (417)
T COG2223 145 AG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV-------------------- 203 (417)
T ss_pred hc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc--------------------
Confidence 98 7777766554 4444447 999998888877775 55566677766421000
Q ss_pred hHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHHHHHHH
Q 016431 153 SIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGV 229 (389)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~ 229 (389)
++......+..+++++.+ .+.+.+...+..+..+..++|.+++ +++.++.. .......+
T Consensus 204 --------------~~~~~~~~~~v~~~~~~W----~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~ 265 (417)
T COG2223 204 --------------KPQLPAQLKAVFSNKDTW----LLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPL 265 (417)
T ss_pred --------------cccchhHHHHHhcCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 000013345555555544 3444444555556777888887776 46777666 55666678
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchh
Q 016431 230 VQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 309 (389)
Q Consensus 230 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (389)
.+.+.++++|+++||+|.++.+...+..++++..+.........+ . .................+.+.. ..+
T Consensus 266 ~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~-----~---~~~~~~~~~~l~l~~~~G~GnG-svf 336 (417)
T COG2223 266 IGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH-----G---GSFVVFVAVFLALFVFAGLGNG-SVF 336 (417)
T ss_pred HHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc-----C---cchHHHHHHHHHHHHHhccCcc-hhe
Confidence 888999999999999999999999888888887777653221111 0 1111111111111112222222 333
Q ss_pred hhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hc-cchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 310 VIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS-SGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.++...+|+ +.|.+.|+....+.+|+..-|...|...+ .+ ....++++.....++.++.+....++
T Consensus 337 k~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 337 KMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred eechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666667765 57899999999999999999999999998 44 34456666666666655555544433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-26 Score=202.92 Aligned_cols=228 Identities=17% Similarity=0.145 Sum_probs=172.0
Q ss_pred CchhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhh
Q 016431 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 80 (389)
Q Consensus 1 lig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 80 (389)
++|++++|.+.||++-.+.+....+++++..++....+|++.+++.|++.|+.++..+|....+++.|+.++||++.+++
T Consensus 95 ii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~ 174 (495)
T KOG2533|consen 95 IIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGI 174 (495)
T ss_pred HHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHH
Confidence 36899999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcccc----------chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCC
Q 016431 81 NQLSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD 149 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~~----------~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 149 (389)
+.+..++|.++|.+++..+ ||||.|++.+++.++. ++..+++|+.|....-.++.|+.. ..++.+.
T Consensus 175 ~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~-~~~~~~~-- 251 (495)
T KOG2533|consen 175 WYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKEL-VVERLRE-- 251 (495)
T ss_pred HHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHH-HHHHHHh--
Confidence 9999999999999998772 8999999998877776 566778999986211011111000 0000000
Q ss_pred cchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHH
Q 016431 150 TDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFG 226 (389)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~ 226 (389)
......+++.++..+++.++++..+... +..++.....+.+.+|+|.++++ .+++..+ .....
T Consensus 252 ----------~~~~~~~~~~~~~~~~~a~~dp~vw~~~----l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~ 317 (495)
T KOG2533|consen 252 ----------SPSGGIENKFKWKGFKEALKDPGVWPFS----LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTP 317 (495)
T ss_pred ----------ccCCCcccccCHHHHHHHHhchhHHHHH----HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccch
Confidence 0000111113445566777776644444 44444444466788888988887 3465444 67777
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 016431 227 LGVVQVVATGVNTWLMDKA 245 (389)
Q Consensus 227 ~~~~~~~~~~~~g~l~d~~ 245 (389)
..++++++.+++|.++||.
T Consensus 318 ~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 318 YDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred HHhhhHHHHHHHHHHHHHH
Confidence 8899999999999999994
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-25 Score=195.91 Aligned_cols=312 Identities=12% Similarity=0.126 Sum_probs=185.3
Q ss_pred hhhchHHHHhhhhhhhHH-HHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccc--cchhh
Q 016431 3 GAIASGQIAEYIGRKGSL-MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR--GSLGS 79 (389)
Q Consensus 3 g~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~ 79 (389)
+++++++ +||+||||.+ ..+.+..+++..+.+++++++.+++.+.+.|...+...|...++..|+.++++| +...+
T Consensus 68 ~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (393)
T PRK15011 68 SQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSS 146 (393)
T ss_pred HHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHH
Confidence 3444555 9999999875 556677678888888999999887665555544556778888888888776655 34457
Q ss_pred hhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHH-HHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhH
Q 016431 80 VNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISI 154 (389)
Q Consensus 80 ~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (389)
+.+.+.++|.+++|++++.+ |||..|++.++..++.. ..+.++||+++.. ++.+
T Consensus 147 ~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------ 205 (393)
T PRK15011 147 FLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKEL---PLAT------------------ 205 (393)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCC---cccc------------------
Confidence 88889999999999999877 99999999887766654 4455678765310 0000
Q ss_pred HHHHHHHHhhhccccccchHHHHhhc-ccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHHHHHHHH
Q 016431 155 EVNEIKRSVASSSRRTAIRFAELKRK-RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVV 230 (389)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~ 230 (389)
+ +.+ . ..++ +............. ........+.|.+.+ +.+.++.. .......+.
T Consensus 206 ---------~-~~~----~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~ 264 (393)
T PRK15011 206 ---------G-TLE----A---PRRNRRDTLLLFVICTLMW----GTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGL 264 (393)
T ss_pred ---------c-ccc----c---cccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0 000 0 0011 11111111111111 112333445665554 45666544 333334566
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhh
Q 016431 231 QVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWV 310 (389)
Q Consensus 231 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (389)
.+++.++.|+++||++||+.+..+.....+....... .. .....+..........+.. .+....
T Consensus 265 ~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~l~~~~l~~~~~g~~-~~~~~~ 328 (393)
T PRK15011 265 EIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM---AH------------SPAILLGLQLLNAIYIGIL-GGIGML 328 (393)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---Hh------------hHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 7788999999999999998776655444333222111 00 0111111111111111111 122235
Q ss_pred hhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh-ccchhhHHHHHHHHHHHHHHHhhccc
Q 016431 311 IMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW-SSGGTFLIYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
+..|..|+ +++++.++.+...++|..++|.+.|.+.|. +....+.. ..+..+.+.+..+..||
T Consensus 329 ~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 329 YFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWF-ALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhcC
Confidence 66788885 599999999999999999999999999994 44344444 34444444555555553
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=199.71 Aligned_cols=293 Identities=14% Similarity=0.127 Sum_probs=192.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHH---HhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLG 78 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 78 (389)
+++++.|++.||+||||++..+..+++++++++ ..+++++.+++.|+++|+|.+...+..++++.|+.|+++|.+.+
T Consensus 76 i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~ 155 (438)
T PRK10133 76 IIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRL 155 (438)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHH
Confidence 578999999999999999999999999999886 46899999999999999999999999999999987777777789
Q ss_pred hhhHHHHHHHHHHHHHhccc------------------------------cchHHHHHhhh-HHHHHHHHH-HhcccCCc
Q 016431 79 SVNQLSVTIGIMLAYLLGLF------------------------------VNWRVLAVLGV-LPCTLLIPG-LFFIPESP 126 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~------------------------------~~wr~~f~~~~-~~~~~~~~~-~~~~~e~p 126 (389)
++.+..+.+|..+++.++.. .+||++|+... +..++..+. ....||.+
T Consensus 156 s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~ 235 (438)
T PRK10133 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999998877531 14666665433 333333222 22344422
Q ss_pred hhhHhcCChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHH
Q 016431 127 RWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 206 (389)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (389)
. ++ . .+++..+...+.+++++++.++...+..++.... ......
T Consensus 236 ~----~~-~---------------------------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~----~~~~~~ 279 (438)
T PRK10133 236 S----DN-H---------------------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGA----QTACWS 279 (438)
T ss_pred c----cc-c---------------------------ccccccchhhhHHHHHhCchHHHHHHHHHHHHHH----HHHHHH
Confidence 1 00 0 0000001122344566666555443333333322 222333
Q ss_pred HHHHH-Hh-hcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccch
Q 016431 207 YSSNI-FA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFY 282 (389)
Q Consensus 207 ~~~~~-~~-~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (389)
|.+.+ .+ ..|.++.. .......++.+++++..+++.||+++|+.+..+..+..+...+.... ..
T Consensus 280 ~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---~~--------- 347 (438)
T PRK10133 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---GG--------- 347 (438)
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CC---------
Confidence 44444 34 35776655 55667788999999999999999999998887766655444333210 00
Q ss_pred hHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 283 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
. .....+.+.+.+ .....|..++...|..|++ .+++.++.. ....|+.++|.+.|.+.|.
T Consensus 348 -~---~~~~~~~l~glg-~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~ 407 (438)
T PRK10133 348 -H---VGLIALTLCSAF-MSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_pred -h---HHHHHHHHHHHH-HHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHh
Confidence 0 111122222222 2344567778888887764 567777776 4557889999999999884
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-25 Score=196.61 Aligned_cols=295 Identities=14% Similarity=0.121 Sum_probs=190.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|++.|++.+...+....+..|.+++++|+++.+..
T Consensus 58 ~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (394)
T PRK11652 58 LSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLL 137 (394)
T ss_pred HHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+.+..+|..++|.+++.+ +||+.|++.++..++. .+..++.||+++.. + +
T Consensus 138 ~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~-~--------------------- 192 (394)
T PRK11652 138 NMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPAD---A-R--------------------- 192 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccc---c-c---------------------
Confidence 999999999999888776 8999999887766554 34455678764310 0 0
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~ 233 (389)
+++....+++.++++..+........... .......+.+.+.++ .+.+... .......++.++
T Consensus 193 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 258 (394)
T PRK11652 193 ----------RTRVLASYRTLLSNRRFNCYLLMLIGTLA----GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFF 258 (394)
T ss_pred ----------hhHHHHHHHHHHcChHHHHHHHHHHHHHH----HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 00011223344444443333322222111 122223333444444 5665544 333344566677
Q ss_pred HHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhc
Q 016431 234 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 313 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (389)
+..+.+++.||.+++... .......+...+........ ...............+.+ ...|...++..
T Consensus 259 g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ 325 (394)
T PRK11652 259 GAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWFGV----------MNVWTLLVPAALFFFGAG-MLFPLATSGAM 325 (394)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc----------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 778888888887743322 22222222222111100000 001111222222222222 23455567777
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 314 EILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
|..| ++++++.++.+....+|..+++.+.+.+.+.
T Consensus 326 ~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 326 EPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred hhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 8877 5689999999999999999999999987664
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=192.66 Aligned_cols=289 Identities=16% Similarity=0.150 Sum_probs=192.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+||||++.++.++..++.+.+ .+++.+.+++.|++.|++.+...+.....+.|++| ++|++++++.
T Consensus 50 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 127 (355)
T TIGR00896 50 VLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLY 127 (355)
T ss_pred HHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHH
Confidence 578999999999999999999999988888887 78899999999999999999888888888889886 6899999999
Q ss_pred HHHHHHHHHHHHHhcccc------chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHH
Q 016431 82 QLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIE 155 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
+.+.++|..+++.++..+ +||+.|...++..++... .++||.++. .+
T Consensus 128 ~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~~----~~--------------------- 180 (355)
T TIGR00896 128 SMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQVRRR----VA--------------------- 180 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhhhccc----cC---------------------
Confidence 999999999888877665 399988776654443322 234443210 00
Q ss_pred HHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHH
Q 016431 156 VNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 233 (389)
++++..+...++.++++..+...+...+ ....+.....+.|.+.++.|.+... .......++.++
T Consensus 181 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~ 247 (355)
T TIGR00896 181 ---------ANQTTTRLTPVRIWRSPLAWQVTVFFGL----QSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAA 247 (355)
T ss_pred ---------CCCCCCCCCCchhhcCHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 0000001122344444443322222222 1222345556778777777776555 555667888999
Q ss_pred HHHHHHHHHhhh-chhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhh
Q 016431 234 ATGVNTWLMDKA-GRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 312 (389)
Q Consensus 234 ~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
++++.|++.||+ +||+.+..+..+..++...+..... ..... ...+...+. ....|...+..
T Consensus 248 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~---~~~l~g~~~-g~~~~~~~~~~ 310 (355)
T TIGR00896 248 SALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM-------------HGLWA---WALVLGLGQ-GGAFPLALTLI 310 (355)
T ss_pred HHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh-------------hHHHH---HHHHHHHhh-hhHhHHHHHHH
Confidence 999999999999 4566666666666665544432100 00011 111112222 22234433444
Q ss_pred cc-ccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 313 SE-ILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 313 ~~-~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
.+ ..+++.++...++.+...+++..++|.+.|.+.|.
T Consensus 311 ~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 311 GLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 34466778999999999999999999999999983
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-25 Score=196.01 Aligned_cols=315 Identities=14% Similarity=0.067 Sum_probs=196.7
Q ss_pred chhhchHHHHhhh-----hhhh-HHHHhhHHHHHHHHHHHhc---cchhHHHHHHHHhhhcccccccccceeeeeccCcc
Q 016431 2 VGAIASGQIAEYI-----GRKG-SLMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN 72 (389)
Q Consensus 2 ig~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 72 (389)
+.++++|+++||+ |||| .+..+.++.+++..+.++. ++++.+.+..++.+++.+...+...+++.|+.|+|
T Consensus 47 ~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 126 (402)
T PRK11902 47 IFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE 126 (402)
T ss_pred HHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 4578999999999 8876 7888888988888888887 35677888888888888889999999999999999
Q ss_pred cccchhhhhHHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhc
Q 016431 73 MRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRG 147 (389)
Q Consensus 73 ~r~~~~~~~~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 147 (389)
||+++.++...+.++|.++++.++..+ +||..|++.++..++..+..++.||+++.. ++.++
T Consensus 127 ~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~---------- 193 (402)
T PRK11902 127 ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRS---------- 193 (402)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccch----------
Confidence 999999999999999999988866554 899999998887766655556677764310 00000
Q ss_pred CCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCccHHHH--
Q 016431 148 FDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATF-- 225 (389)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 225 (389)
. +++..+.++++++++..+.......+....... ......+.+.++.|.++.+....
T Consensus 194 -----------~-------~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~---~~~~~~~~l~~~~G~~~~~~g~~~~ 252 (402)
T PRK11902 194 -----------L-------GEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAF---AGSLSTTFLIRGAGFSAGEVGIVNK 252 (402)
T ss_pred -----------h-------HHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHH---HHHHHHHHHHHhcCCCHHHHHHHHh
Confidence 0 000122455677777666554443333322211 11222334445567766553332
Q ss_pred HH-HHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhh---heeeeee
Q 016431 226 GL-GVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLV---TVVISFS 301 (389)
Q Consensus 226 ~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 301 (389)
.. .++.+++.++.+++.||+++|+.+..+..+..+..+.+.......+ ..+....... +......
T Consensus 253 ~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~ 321 (402)
T PRK11902 253 TLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK-----------HLWTMALAIGIENLCGGMGT 321 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------cHHHHHHHHHHHHHHHHHHH
Confidence 22 3457889999999999999998876666555544333322111100 0011111111 1111111
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHH
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFT 365 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~ 365 (389)
.........++.+.+|.+. .+..+....++...++.+.|.+.| .++...+...+.++.+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~ 382 (402)
T PRK11902 322 AAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPG 382 (402)
T ss_pred HHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 1223334456666666544 455666667777777778999998 45444444444444443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-25 Score=197.22 Aligned_cols=328 Identities=14% Similarity=0.054 Sum_probs=187.2
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHH---hccc-----hhHHHHHHHHhhhcccccccccceeeeeccC--c
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSKD-----SSFLFMGRLLEGFGVGVISYTVPVYIAEIAP--Q 71 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~-----~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~--~ 71 (389)
++++++|+++||+||||+++++..+.+++..... .++. .....+.++..|.+.....+ .+.++.+ +
T Consensus 61 i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 136 (420)
T PRK09528 61 LFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAG----AIEAYIERVS 136 (420)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchh----hhhhHHHHHH
Confidence 5789999999999999999887666655433221 1111 11122233434433333333 3334333 3
Q ss_pred ccccchhhhhHHHHHHHHHHHHHhcccc---chHHHHHhhhHHHHHHHHHHhccc-CCchhhHhcCChhHHHHHHHHHhc
Q 016431 72 NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFFIP-ESPRWLAKMGMTEDFESSLQVLRG 147 (389)
Q Consensus 72 ~~r~~~~~~~~~~~~lG~~l~~~i~~~~---~wr~~f~~~~~~~~~~~~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~ 147 (389)
+++++.++......++|..++|.+++.+ +|+++|++.++.+++..+..++.+ |+++....++ +
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------ 203 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN-A------------ 203 (420)
T ss_pred hhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc-c------------
Confidence 4567788888888899999999998877 899999998877776655555543 3322000000 0
Q ss_pred CCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHH
Q 016431 148 FDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATF 225 (389)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 225 (389)
+.+++++......++.++++..+...+..................+......+.+.+... ....
T Consensus 204 --------------~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 269 (420)
T PRK09528 204 --------------LGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNS 269 (420)
T ss_pred --------------hhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 000001111123344556665544333222222211111111222333333222333222 4444
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccc
Q 016431 226 GLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVG 305 (389)
Q Consensus 226 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (389)
...+...++.+..|++.||+++|+.+..+..+..+...++.+. ...........+...... ...
T Consensus 270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~---------------~~~~~~~~~~~l~g~~~~-~~~ 333 (420)
T PRK09528 270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA---------------TGPLEVSILKLLHAFEVP-FLL 333 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc---------------ccHHHHHHHHHHHHHHHH-HHH
Confidence 4567778999999999999999999888777777766555431 001111111111111111 112
Q ss_pred cchhhhhccccccchhhhhhhH-HHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 306 AIPWVIMSEILPVNIKSLAGSV-ATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
+....+..|.+|++.+++..+. .+....+|..++|.+.|++.| .++...+...+++..+...+.....+++
T Consensus 334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2334677888999999888766 677888999999999999999 5666667766776666555555555543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=192.47 Aligned_cols=306 Identities=14% Similarity=0.046 Sum_probs=202.3
Q ss_pred chhhchHHHHhhhhhhhHH----HHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 2 VGAIASGQIAEYIGRKGSL----MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
++++++|+++||+|||+.. ..+..+..+ ..+..+++++.+++.|+++|.+.+...|...++..|+ +++|++.
T Consensus 54 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~ 129 (382)
T TIGR00902 54 AGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLD 129 (382)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCC
Confidence 4678999999999985433 333322222 2445678999999999999999988889888887654 4778999
Q ss_pred hhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchh
Q 016431 78 GSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDIS 153 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (389)
.+......++|.+++|++++.+ |||..|++.....++..+. +.++|+++. +++ +
T Consensus 130 ~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~---~~~-~----------------- 187 (382)
T TIGR00902 130 YGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIG-FLIKPTIPP---KDA-I----------------- 187 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHcCCCCCC---Ccc-c-----------------
Confidence 9999999999999999988887 9999998766543333333 333443210 000 0
Q ss_pred HHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHH
Q 016431 154 IEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQ 231 (389)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 231 (389)
++++.++..+.++++|++..+...+...+.... ......+.+.+.++.|.++.. .......+..
T Consensus 188 ----------~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~----~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~ 253 (382)
T TIGR00902 188 ----------PEDESQGDSAFIALLKNPMNLRFLAAVCLIQGA----HAAYYGFSAIYWQAAGISASATGLLWGIGVLAE 253 (382)
T ss_pred ----------cccccccchhHHHHHcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHH
Confidence 000001122355667766655544444433332 334444666667778887655 4445567888
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhh
Q 016431 232 VVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVI 311 (389)
Q Consensus 232 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (389)
+++..+.+++.||+++|+.+..+.+...+....+... ...+.......+....++.. .+....+
T Consensus 254 i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~q~l~g~~~~~~-~~~~~~~ 317 (382)
T TIGR00902 254 IIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI---------------EAFPLIFLLQILHCGTFAVC-HLAAMRY 317 (382)
T ss_pred HHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH---------------hhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 8889999999999999999998888888877666532 11111222222222223222 2334477
Q ss_pred hccccccchhhhhhhHHH-HHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHH
Q 016431 312 MSEILPVNIKSLAGSVAT-LANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAF 364 (389)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 364 (389)
+.+. |++++++..++++ ....+|..++|.+.|.+.|..+...++..+++.++
T Consensus 318 i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~ 370 (382)
T TIGR00902 318 IAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAA 370 (382)
T ss_pred HHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8887 9999999999986 46779999999999999995445556666665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-25 Score=195.62 Aligned_cols=327 Identities=10% Similarity=0.033 Sum_probs=204.0
Q ss_pred chhhchHHHHhhhhh-hhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeee--------eccCcc
Q 016431 2 VGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIA--------EIAPQN 72 (389)
Q Consensus 2 ig~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~--------~~~~~~ 72 (389)
++++++|.++||+|| |+++.++.++.+++..+..+.++++.+.+.|++.|++.+...+...+... |.....
T Consensus 53 i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~ 132 (418)
T TIGR00889 53 LMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDF 132 (418)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcC
Confidence 678999999999965 77888899999899989999999999999999999987777665554422 323333
Q ss_pred cccchhhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcC
Q 016431 73 MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGF 148 (389)
Q Consensus 73 ~r~~~~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 148 (389)
.|.+..|. +|.+++|.+++.+ .|+ +|++.++..++..+..+++||+|+. +++.+.
T Consensus 133 ~~~r~~G~------lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~----------- 191 (418)
T TIGR00889 133 PPIRVMGT------IGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALTLPDIPVA---KSTAKM----------- 191 (418)
T ss_pred CCeeeehh------HHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhcCCCCCCC---cccccc-----------
Confidence 45555552 4556666666544 344 4556555555555556678887531 000000
Q ss_pred CcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCC---------
Q 016431 149 DTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISS--------- 219 (389)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 219 (389)
+ .++....+.++.+|++.+.......++.... ......+.+.+.++.+.++
T Consensus 192 ---------~-------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 251 (418)
T TIGR00889 192 ---------S-------IKVMLGLDAFILFKNKRMAIFFFFSMLLGAP----LQITNIFGNGFLHEFGRNPEFADSFVVK 251 (418)
T ss_pred ---------C-------HHHHhhhhHHHHhcCCCeeeHHHHHHHHHhH----HHHHHHhHHHHHHHhcccccccchhhhh
Confidence 0 0000011233456666554444443333221 1223344455555555332
Q ss_pred -ccHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheee
Q 016431 220 -SNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVI 298 (389)
Q Consensus 220 -~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (389)
.........+..+++.+..+++.||+|+|+.+..+.++..++..++... ... ............+...
T Consensus 252 ~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~---~~~--------~~~~~~l~l~~~l~g~ 320 (418)
T TIGR00889 252 NASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG---DPE--------YFGYALLFLSMIVYGC 320 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---Ccc--------hhhHHHHHHHHHHHHH
Confidence 1245555677888999999999999999999988888777765555431 000 0001111112222222
Q ss_pred eeecccccchhhhhccccccchhhhhhhHHH-HHHHHHHHHHHHHhHHHhhh-c------cchhhHHHHHHHHHHHHHHH
Q 016431 299 SFSLGVGAIPWVIMSEILPVNIKSLAGSVAT-LANWLVSWIVTMTANFLLDW-S------SGGTFLIYGIVCAFTVAFVS 370 (389)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~-~------~~~~~~~~~~~~~~~~~~~~ 370 (389)
+.+ ...+....++.|.+|++.|+++.|+.+ ....+|..++|.+.|.+.|. + +...+...+++..+.+++..
T Consensus 321 ~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~ 399 (418)
T TIGR00889 321 AFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFM 399 (418)
T ss_pred HHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence 222 223444578899999999999999997 56789999999999999984 2 23456667667677777777
Q ss_pred hhcccCCCCCH
Q 016431 371 LWVPETKGRSL 381 (389)
Q Consensus 371 ~~~~~~~~~~~ 381 (389)
++.+|++++.+
T Consensus 400 ~~~~~~~~~~~ 410 (418)
T TIGR00889 400 IFFKYSHNAIK 410 (418)
T ss_pred HHhCCcccCCC
Confidence 77887765543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=195.59 Aligned_cols=290 Identities=13% Similarity=0.103 Sum_probs=198.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHh---ccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLG 78 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 78 (389)
+++++.|++.||+|||+++..+.++++++.+++.. .++++.+++.|++.|+|.|...+..+.++.+..|+++|++.+
T Consensus 53 i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~ 132 (410)
T TIGR00885 53 IMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRL 132 (410)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHH
Confidence 57889999999999999999999999999988654 468999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcccc------------------------------chHHHHHhhhHHHHHHHHHHhc--ccCCc
Q 016431 79 SVNQLSVTIGIMLAYLLGLFV------------------------------NWRVLAVLGVLPCTLLIPGLFF--IPESP 126 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~------------------------------~wr~~f~~~~~~~~~~~~~~~~--~~e~p 126 (389)
++.+...++|..++|.++..+ +||++|++.+++.++..+...+ .||.+
T Consensus 133 ~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~ 212 (410)
T TIGR00885 133 NLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALN 212 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999998876544 3999998888766655444333 33321
Q ss_pred hhhHhcCChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHH
Q 016431 127 RWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 206 (389)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (389)
+ + + +++.+...+.++.++++..+...+..++..... .....
T Consensus 213 ~-----~--~----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e----~~~~s 253 (410)
T TIGR00885 213 H-----S--D----------------------------AKQISFSASLSRLARIRHYREGVIAQFFYVGVQ----IMCWT 253 (410)
T ss_pred c-----c--c----------------------------cccccchhhHHHHHhChhHHHHHHHHHHHHHHH----HHHHH
Confidence 0 0 0 000011123344556555554444444433332 23345
Q ss_pred HHHHHHhhcCCC--Ccc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccch
Q 016431 207 YSSNIFANAGIS--SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFY 282 (389)
Q Consensus 207 ~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (389)
+.+.+.++.+.+ ... ...........+|+++++++.||+++|+.+.....+..+..++.... .+
T Consensus 254 ~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---~~--------- 321 (410)
T TIGR00885 254 FIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---GG--------- 321 (410)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CC---------
Confidence 556555543322 221 22333446678999999999999999998877776666655554421 00
Q ss_pred hHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 283 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
......+.... .+.....|..++...+..+++.+..+.++.... +|+++.|++.|.+.|.
T Consensus 322 ----~~~~~~l~~~g-lf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 322 ----HVGLYCLTLCS-AFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred ----hHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 01112222222 223344578889999999887765555655544 9999999999999993
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=222.37 Aligned_cols=301 Identities=12% Similarity=0.017 Sum_probs=199.4
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHH---hccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLG 78 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 78 (389)
++++++|+++||+|||++++++.++..+..++.. .+++++.+++.|+++|++.+...+...+++.|++|+++|++++
T Consensus 62 l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 141 (1146)
T PRK08633 62 LLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRAN 141 (1146)
T ss_pred HHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhh
Confidence 5788999999999999999998877666555443 4578999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcccc-c------------hHHHHHhhhH-HHHHHHHHHhcccCCchhhHhcCChhHHHHHHHH
Q 016431 79 SVNQLSVTIGIMLAYLLGLFV-N------------WRVLAVLGVL-PCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQV 144 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~-~------------wr~~f~~~~~-~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~ 144 (389)
++.+.+.++|.++|+.+++++ . |++.+.+..+ ..++.++..+.+||+|+....+++.++
T Consensus 142 ~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 214 (1146)
T PRK08633 142 GLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKK------- 214 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccc-------
Confidence 999999999999999998876 2 2333333332 333344455567877642111100000
Q ss_pred HhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHH-hhcCCCCc-c-
Q 016431 145 LRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF-ANAGISSS-N- 221 (389)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~- 221 (389)
..........++.+++++..+..++...+.... ......+.+.++ +..+.+.. .
T Consensus 215 -------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~s~~~~~ 271 (1146)
T PRK08633 215 -------------------YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFI----SQLAQANFPAYAKEVLGLDNTFQV 271 (1146)
T ss_pred -------------------cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHhCCCcHHHH
Confidence 000001112344555555544433333333222 223333444444 44677665 3
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeee
Q 016431 222 -VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300 (389)
Q Consensus 222 -~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (389)
.......++.+++.++.+++.||+++++.+.++.++.+++.+++... ......++..++++.+.
T Consensus 272 g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~ 336 (1146)
T PRK08633 272 QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA---------------PSLASVLVLFFLFGFSA 336 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHHHH
Confidence 55556678888999999999999998888777776666655554432 01112222222222222
Q ss_pred ecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
+ ...+...+++.+..|++.||+++|+.++...++..+++.+.+.+..
T Consensus 337 ~-~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 337 G-LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred H-HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2233445888899999999999999999999999888888776654
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=186.10 Aligned_cols=313 Identities=15% Similarity=0.157 Sum_probs=187.2
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+.++.+|.++||+|||+++++++...+++.++.+.+.|+..+.+.|++.|+..| ...+..++++|.+++|+|++.++.+
T Consensus 83 ~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v 161 (451)
T KOG2615|consen 83 ISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLV 161 (451)
T ss_pred HhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeee
Confidence 578999999999999999999999999999999999999777777999999884 4568899999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccch------HHHHHh----hhHHHHH-HHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCc
Q 016431 82 QLSVTIGIMLAYLLGLFVNW------RVLAVL----GVLPCTL-LIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDT 150 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~~w------r~~f~~----~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 150 (389)
+..+++|.++||.+|+++.- +++|.. ..+.... .....+++||+-+...++++..+..+..
T Consensus 162 ~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~-------- 233 (451)
T KOG2615|consen 162 GTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAA-------- 233 (451)
T ss_pred ehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhh--------
Confidence 99999999999999999821 122322 2222222 3445567899843211110001000000
Q ss_pred chhHHHHHHHHHhhhccccccchHHHHhhcccchhHHH---HHHHHHHHhhcChhHHHHHHHHHH-hhcCCCCcc--HHH
Q 016431 151 DISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMI---GIGLLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VAT 224 (389)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~ 224 (389)
++ ..+..+-+ ........++++....+. .+.+..+.....+....++.+.+. ...|+++.+ ...
T Consensus 234 ------~~---~~~~~~~~-~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl 303 (451)
T KOG2615|consen 234 ------DD---RLALLKFA-RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVL 303 (451)
T ss_pred ------hh---hhhhcchh-hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeee
Confidence 00 00000000 000111222222221111 111111111111222333333331 345676555 444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeec
Q 016431 225 FGLGVVQVVATGVNTWLMDKAG--RRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSL 302 (389)
Q Consensus 225 ~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (389)
...++.+.+......+..||.. .+-.+.....++....+++... ..+.....+..+..+.. .
T Consensus 304 ~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~---------------~~~~~l~~~s~l~sf~~-A 367 (451)
T KOG2615|consen 304 STTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA---------------RTPVVLYLGSTLKSFST-A 367 (451)
T ss_pred ehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc---------------ccchhhhHHHHHHHHHH-H
Confidence 4455666666666666666655 3444444444444444444321 11111122222222221 2
Q ss_pred ccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 303 GVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
...+....++....|+++||+.+|+..+.+.++.++||.+.|.+..+
T Consensus 368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 22344458888999999999999999999999999999999998874
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-25 Score=223.39 Aligned_cols=314 Identities=14% Similarity=0.025 Sum_probs=203.1
Q ss_pred chhhchHHHHhhhhhhhHHHH---hhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchh
Q 016431 2 VGAIASGQIAEYIGRKGSLMI---AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLG 78 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 78 (389)
+.++++|+++||+|||+++.. ..+......+.....+++++++++|+++|++.+...|+..+++.|++|+++|++++
T Consensus 67 l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~ 146 (1140)
T PRK06814 67 IFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGAN 146 (1140)
T ss_pred HHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhh
Confidence 567899999999999998643 33333333334444589999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhH
Q 016431 79 SVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISI 154 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (389)
++.+++.++|.++||.+++++ +|++.|+..++..++.++..+++|+++... ++...+ .
T Consensus 147 ~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----------------~ 208 (1140)
T PRK06814 147 ALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKID----------------R 208 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCeec----------------c
Confidence 999999999999999999988 899999656566666666666777664210 000000 0
Q ss_pred HHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHHHHHH
Q 016431 155 EVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQ 231 (389)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~ 231 (389)
. ..++....++.+.+++.++...+...+..+. ......+.|.+.++ .+.+... ......+++.
T Consensus 209 --~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~ 274 (1140)
T PRK06814 209 --N--------IIRSTITLLKYAKADKRIWLAILGISWFWLV----GAVVLSQLPLLAKETLGGDENVATLFLAVFSVGV 274 (1140)
T ss_pred --c--------hHHHHHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 0 0000112345566666555544444433332 23344456666654 4665544 5556677889
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc-c----chhHHHHHHHHHhhheeeeeeccccc
Q 016431 232 VVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS-R----FYSILGILSLVGLVTVVISFSLGVGA 306 (389)
Q Consensus 232 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (389)
+++.++.+++.|+..+++.+..+.++..++.+.+.+............ . ......+...+..++++.+.+ ...+
T Consensus 275 ~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~ 353 (1140)
T PRK06814 275 AVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGG-LYIV 353 (1140)
T ss_pred HHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHH-HhHH
Confidence 999999999998877766555555544444433332100000000000 0 000011122222222222222 2333
Q ss_pred chhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 307 IPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
...+++.+..|++.+|+++|+.++...++..+++.+.+.+.+
T Consensus 354 ~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 354 PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455899999999999999999999999999999999999875
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=189.24 Aligned_cols=304 Identities=14% Similarity=0.045 Sum_probs=193.4
Q ss_pred chhhchHHHHhhhhhh----hHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 2 VGAIASGQIAEYIGRK----GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
++++++|+++||+||| +.+.+...+. .......+++++.+++.|++.|++.+...|...++..++ +++|+++
T Consensus 54 l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a 129 (382)
T PRK11128 54 LGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLD 129 (382)
T ss_pred hhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCC
Confidence 5688999999999984 3333332222 223344568899999999999999988988888877776 4568889
Q ss_pred hhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchh
Q 016431 78 GSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDIS 153 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (389)
.+......++|..+||++++.+ |||..|++.++..++..+..++.||+++ ++++
T Consensus 130 ~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~------------------ 187 (382)
T PRK11128 130 YGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP----QGES------------------ 187 (382)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----cccc------------------
Confidence 9999999999999999999887 9999998877655544444444555321 0000
Q ss_pred HHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHH
Q 016431 154 IEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQ 231 (389)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 231 (389)
+++.++...+++++++++..+.......+.... ......+.+.+.++.|.++.. .......+..
T Consensus 188 ----------~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~ 253 (382)
T PRK11128 188 ----------RQQESAGWPAWKALLKEPTVWRFLLCVSLLQGS----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAE 253 (382)
T ss_pred ----------ccccccccchHHHHHcChhHHHHHHHHHHHHHH----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHH
Confidence 000011123566777777655544443433332 223334445555677776554 3344456777
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhh
Q 016431 232 VVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVI 311 (389)
Q Consensus 232 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (389)
++...+.+++.||+++|+.+..+....+++..++... ...+.......+.+..++. ..+....+
T Consensus 254 ~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~g~~~~~-~~~~~~~~ 317 (382)
T PRK11128 254 VLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST---------------TALPWLIVIQILHCGTFTV-CHLAAMRY 317 (382)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh---------------hhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 8888999999999999999888887777765554421 1112222222222222222 23344466
Q ss_pred hccccccchhhhhhhHHH-HHHHHHHHHHHHHhHHHhhhccchhhHHHHHHH
Q 016431 312 MSEILPVNIKSLAGSVAT-LANWLVSWIVTMTANFLLDWSSGGTFLIYGIVC 362 (389)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~ 362 (389)
..+. +++++++..+..+ ....+|..++|.+.|.+.|..+...++..+++.
T Consensus 318 ~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~ 368 (382)
T PRK11128 318 IAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVA 368 (382)
T ss_pred HHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6665 5666788888886 445677799999999999954444444444443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=193.98 Aligned_cols=294 Identities=17% Similarity=0.135 Sum_probs=180.0
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc-chhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 80 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 80 (389)
+++++.|+++||+|||+.+.++.++..++.+++++++ +++.+++.|+++|++.+. .+....++.|++|+++|+++.++
T Consensus 52 ~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~ 130 (366)
T TIGR00886 52 VLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGL 130 (366)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHH
Confidence 5789999999999999999999999999999999999 999999999999998654 56678899999999999999999
Q ss_pred hHHHHHHHHHHHHHhccc--------------cchHHHH-HhhhHHHHH-HHHHHhcccCCchhhHhcCChhHHHHHHHH
Q 016431 81 NQLSVTIGIMLAYLLGLF--------------VNWRVLA-VLGVLPCTL-LIPGLFFIPESPRWLAKMGMTEDFESSLQV 144 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~--------------~~wr~~f-~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~ 144 (389)
.....++|..+++.++.. .+||+.| +..++...+ ..+...+.+|+|+... ++++.. .
T Consensus 131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~-- 203 (366)
T TIGR00886 131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKP---ATGKLS--F-- 203 (366)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccc---cchhcc--c--
Confidence 886666666555444432 2699999 443444333 3444555677653110 000000 0
Q ss_pred HhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--
Q 016431 145 LRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN-- 221 (389)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 221 (389)
.+.. ...+++......+.++++..+...+....... .......+.+.++++ .+.++.+
T Consensus 204 -~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~ 264 (366)
T TIGR00886 204 -KGAR--------------WSVGTGALGDQLKVFRDRHTWILALLYSVTFG----SFLGVSSIFAMFFKDQFGLSKVTAG 264 (366)
T ss_pred -cccc--------------ccccchhHHHHHHHHhccchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 0000 00000011133445555544433333222222 233445556666654 5766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
.......+..+++.++.+++.||+++|+....+......+..++..... ++. ................+
T Consensus 265 ~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~~g 333 (366)
T TIGR00886 265 AYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV------SPL-----SLAVFIVLFVALFFFSG 333 (366)
T ss_pred HHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC------Ccc-----hHHHHHHHHHHHHHHhc
Confidence 3455567788899999999999999988777666655555444432110 000 01111111111111112
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHH
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLV 335 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 335 (389)
.+ .+..+....|..| +++|+++|+.+..+++|
T Consensus 334 ~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 334 AG-NGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred cc-cchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 12 2234467777776 58999999998887665
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=188.19 Aligned_cols=333 Identities=12% Similarity=0.090 Sum_probs=190.9
Q ss_pred hhhchHHHHhh-hhhhhHHHHhhHHHHHHHHHHHhccchhH-HHHHHHHhhhcccccccccceeeeeccCcc--cccchh
Q 016431 3 GAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSF-LFMGRLLEGFGVGVISYTVPVYIAEIAPQN--MRGSLG 78 (389)
Q Consensus 3 g~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~ 78 (389)
..+++|+++|| +||||+++++.++++++++.++++++... +.+.|+++|+|.|...|...+++.|.+|++ +|.+++
T Consensus 66 ~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~ 145 (489)
T PRK10207 66 LISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAF 145 (489)
T ss_pred HHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcch
Confidence 35689999999 99999999999999999999999877554 558999999999999999999999999877 457899
Q ss_pred hhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhH--hcCChhHHHHHHH---------
Q 016431 79 SVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLA--KMGMTEDFESSLQ--------- 143 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~--~~~~~~~~~~~~~--------- 143 (389)
++++.+.++|.++||.+++++ |||+.|++.++..++.++.+...++..+... .+++..|......
T Consensus 146 ~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~ 225 (489)
T PRK10207 146 TLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMI 225 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHH
Confidence 999999999999999988887 9999999876544444444433332211100 0011111111100
Q ss_pred -HHh--cCCcchhHHHHHH----HH--HhhhccccccchHHHHhhcccchhHHHH--HHHHHHHhhcChhHHHHHHHHHH
Q 016431 144 -VLR--GFDTDISIEVNEI----KR--SVASSSRRTAIRFAELKRKRYWFPLMIG--IGLLVLQQLSGINGVLFYSSNIF 212 (389)
Q Consensus 144 -~~~--~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 212 (389)
... ............. .. -..++.+. ++.+|++.+....+. ..+.+.......+..+.+.+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~-----~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~ 300 (489)
T PRK10207 226 FVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL-----DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNV 300 (489)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhc
Confidence 000 0000000000000 00 00000000 023333322211111 11122222222223333332211
Q ss_pred hh--cCCC-CccHHHHHHHHHHHHHHHHHHHHHhhhchhH-------HHHHHhHHHHHHHHHHHHHHhhcccccCCccch
Q 016431 213 AN--AGIS-SSNVATFGLGVVQVVATGVNTWLMDKAGRRL-------LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFY 282 (389)
Q Consensus 213 ~~--~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (389)
.+ .|+. +.........+..++..++.+++.||+++|+ .+..+.++.+++++.+..........+.+.
T Consensus 301 ~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~--- 377 (489)
T PRK10207 301 HHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLT--- 377 (489)
T ss_pred cccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc---
Confidence 11 1221 1113334445667678888899999999886 366677777766554432211111101111
Q ss_pred hHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 016431 283 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFL 346 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 346 (389)
..+.......+...+ .....|....++.+..|++.++.++|+.+....+|+.++..+....
T Consensus 378 --s~~~~i~~~~l~g~G-e~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 378 --SPWFIVLVYLFQSLG-ELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred --CHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111222222222 2334566668888999999999999999999999999998888655
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=188.19 Aligned_cols=320 Identities=14% Similarity=0.100 Sum_probs=191.6
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHH---Hhcc-----chhHHHHHHHHhhhcccccccccceeeeeccCccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFSK-----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 73 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~-----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 73 (389)
+++++.|+++||+|||+.++.+....+++.... .+.+ ....+.+.|++.|++.+...+....+..|.. ++
T Consensus 53 i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~ 130 (396)
T TIGR00882 53 LFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RN 130 (396)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hh
Confidence 578999999999999999998777665544322 1222 2334566788999988888888777766643 33
Q ss_pred ccchhhhhHHHHHHHHHHHHHhcccc---chHHHHHhhhHHHHHHHHHHhc-ccCCchhhHhcCChhHHHHHHHHHhcCC
Q 016431 74 RGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFD 149 (389)
Q Consensus 74 r~~~~~~~~~~~~lG~~l~~~i~~~~---~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 149 (389)
+++.++......++|.+++|.+++.+ +||.+|++.++..++..+..+. .||+|+.. +.+
T Consensus 131 ~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------- 193 (396)
T TIGR00882 131 SNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSSA-------TVA---------- 193 (396)
T ss_pred cccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchhh-------hhh----------
Confidence 45667777788889999999888876 9999999988877776544444 44443200 000
Q ss_pred cchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhc----CCCCcc--HH
Q 016431 150 TDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA----GISSSN--VA 223 (389)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~ 223 (389)
+ ..++++++++..+.++.++++..+...+........ +.....+.+.+.++. +.+... ..
T Consensus 194 --------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~----~~~~~~~~~~y~~~~~~~~~~~~~~~g~~ 259 (396)
T TIGR00882 194 --------N--ALGANASAFSLKLALELFRQRKFWMFVLYVVGVACV----YDVFDQQFANFFTSFFATPQQGTRVFGYV 259 (396)
T ss_pred --------c--ccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccccccchHHHHHH
Confidence 0 000001111223456667766544333322222111 222222333333332 222222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecc
Q 016431 224 TFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLG 303 (389)
Q Consensus 224 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (389)
.....+...++....+++.||+++|+.+..+..+..+...+.... . ..........+...+.. .
T Consensus 260 ~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~---~------------~~~~~~~~~~l~g~~~~-~ 323 (396)
T TIGR00882 260 TTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA---T------------TALEVVILKMLHAFEVP-F 323 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc---C------------ChHHHHHHHHHHHHHHH-H
Confidence 444567778888999999999999999888777766655543321 0 01111111111111111 1
Q ss_pred cccchhhhhccccccchhhhhhhH-HHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHH
Q 016431 304 VGAIPWVIMSEILPVNIKSLAGSV-ATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVS 370 (389)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
.......+..+..|++.+++..+. .+....+|+.++|.+.|++.| .++...+.+.+++..+.+++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 324 LLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 111223456667788888887766 678899999999999999999 5666677777776666555443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-25 Score=184.85 Aligned_cols=321 Identities=14% Similarity=0.081 Sum_probs=214.4
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcc-cccchhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN-MRGSLGSV 80 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-~r~~~~~~ 80 (389)
+.+++.|.+.||+|+|-.+++|+.++..+++++++.++++.++++|.+||+|.++...+..++++|.+|++ ||++++|+
T Consensus 121 lvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGi 200 (464)
T KOG3764|consen 121 LVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGI 200 (464)
T ss_pred HhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999876 57999999
Q ss_pred hHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 81 NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
.-.+.++|.++||+.|+.+ |.+.+|++.++.+++...+.+++-|..+
T Consensus 201 algfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~----------------------------- 251 (464)
T KOG3764|consen 201 ALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE----------------------------- 251 (464)
T ss_pred HHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc-----------------------------
Confidence 9999999999999999998 9999999999998888776666544311
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVA 234 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 234 (389)
.+++...+..++.+++++++..... .....++...-..-+.+.....++...+..+ .......+...++
T Consensus 252 ------~~~~~~~~~~~~~~Ll~dP~I~~~a---gai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig 322 (464)
T KOG3764|consen 252 ------MDPDSTEQGTPMWSLLMDPYILLIA---GAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIG 322 (464)
T ss_pred ------cCccccccCccHHHHHhCchHhhhh---cchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhcc
Confidence 0011122334456666666533221 1111111111111122222233444432212 5566677889999
Q ss_pred HHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhcc
Q 016431 235 TGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 314 (389)
Q Consensus 235 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (389)
..+.|.+.||++.-+.+.....+..++.....+..... + ...+....+..+..........|.. .+..|
T Consensus 323 ~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~--------~--~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd 391 (464)
T KOG3764|consen 323 TNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS--------I--AQLWVPNFGLGFGIGLADASLIPTL-GYLVD 391 (464)
T ss_pred CchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh--------H--HHHhhhhHHHHHHHHHHHHHHhhhh-HHhcc
Confidence 99999999999943333332222222222221111100 0 0011111222221222222333444 44555
Q ss_pred ccccc---hhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHh
Q 016431 315 ILPVN---IKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSL 371 (389)
Q Consensus 315 ~~~~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
....+ ..|...++......+|.++||.++|.+.+ .+..+...+.+....+-+-++.+
T Consensus 392 ~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 392 PRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred hhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 54444 67899999999999999999999999998 77777777777776666555444
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=188.36 Aligned_cols=293 Identities=13% Similarity=0.077 Sum_probs=187.6
Q ss_pred hhchHHHHhhh-----hhhhH-HHHhhHHHHHHHHHHHhc---cchhHHHHHHHHhhhcccccccccceeeeeccCcccc
Q 016431 4 AIASGQIAEYI-----GRKGS-LMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR 74 (389)
Q Consensus 4 ~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 74 (389)
++++|+++||+ ||||. ++.+.++.++.....++. .+.+.+....++.+++.+...+...+++.|++|+|+|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 78899999998 89997 567788888887777777 4556677788888888888889999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHHhcccc----c--------hHHHHHhhhHHHHHHHHHHhc-ccCCchhhHhcCChhHHHHH
Q 016431 75 GSLGSVNQLSVTIGIMLAYLLGLFV----N--------WRVLAVLGVLPCTLLIPGLFF-IPESPRWLAKMGMTEDFESS 141 (389)
Q Consensus 75 ~~~~~~~~~~~~lG~~l~~~i~~~~----~--------wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~ 141 (389)
+++.++...+.++|.++++.+++.+ + ||..|++.++..++..+..++ .||+++. ++ .++
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~-~~~---- 189 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---AS-VPK---- 189 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cc-cch----
Confidence 9999999999999999999988765 6 999999988877776555443 5664320 00 000
Q ss_pred HHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc
Q 016431 142 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN 221 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (389)
++ +++.+..++++++++..+............ ...+.....+.+.+.++.|.+..+
T Consensus 190 ---------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~ 245 (356)
T TIGR00901 190 ---------------PL--------TQAVLKPIREFFQRKNMIQALLLLLLIVLY-KLGDSAATVLTTLFLLDMGFSKEE 245 (356)
T ss_pred ---------------hH--------HHHHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 00 000112345555555422222222222211 122344555666666667776655
Q ss_pred HH--HHHHH-HHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheee
Q 016431 222 VA--TFGLG-VVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVI 298 (389)
Q Consensus 222 ~~--~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (389)
.. ....+ +..+++.++++++.||+|+|+.+..+.++..+...++........+ . +.+ . ...+.......+...
T Consensus 246 ~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~-~~~~~~~~~~~l~~~ 321 (356)
T TIGR00901 246 IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHH-D-GIT-F-PHLLMLFLTITLEAV 321 (356)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc-c-ccc-c-chHHHHHHHHHHHHH
Confidence 32 22233 5677999999999999999998887777766655444322111000 0 000 0 001111111111112
Q ss_pred eeecccccchhhhhccccccchhhhhhhHHHHHHH
Q 016431 299 SFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANW 333 (389)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 333 (389)
+ .....+...++..|.+|+++||+.+|+.++..+
T Consensus 322 ~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 322 T-GGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred H-hHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2 223345566999999999999999999887654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=190.42 Aligned_cols=316 Identities=15% Similarity=0.150 Sum_probs=214.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc-----cchhHHHHHHHHhhhcccccccccceeeeeccCcccccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS 76 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 76 (389)
+.+++.|.++||++|||+++.+.++.++..+..++. .+.+.+++.-++.|++.+...|...+.+.|..|+++..+
T Consensus 60 Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~ 139 (524)
T PF05977_consen 60 LLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPA 139 (524)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHH
Confidence 457899999999999999999998887665554432 477889999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcch
Q 016431 77 LGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI 152 (389)
Q Consensus 77 ~~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (389)
+.++.+...++..++||.+++.+ |-.+.|.+.++..++.+......+..++ .++..+
T Consensus 140 A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~---------------- 200 (524)
T PF05977_consen 140 ANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPR---------------- 200 (524)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccch----------------
Confidence 99999999999999999999987 7788898888766665544444433211 000000
Q ss_pred hHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHHHHHHH
Q 016431 153 SIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGV 229 (389)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~ 229 (389)
++-.+.-+..++...+++..+..+....+..+. .......+|.+.+ ..+.++.. ......++
T Consensus 201 -----------e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~----~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gv 265 (524)
T PF05977_consen 201 -----------ERFFSALREGLRYVRSSPPLRSVLLRSFLFNLF----ASAVWALLPLFARDVLGGGASGYGLLLAAFGV 265 (524)
T ss_pred -----------hhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHh----hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHH
Confidence 000111122333344444444333322222222 1222334565554 34555444 56666789
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchh
Q 016431 230 VQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 309 (389)
Q Consensus 230 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (389)
+.++|.++.+++.+|+++++.+..+.+..+++.+.+++. ...+.....+++.+.+. ........
T Consensus 266 Gai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~---------------~~~~~~~~~l~l~G~~~-~~~~~~~~ 329 (524)
T PF05977_consen 266 GAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS---------------PSFWLALIALFLAGAAW-IIANSSLN 329 (524)
T ss_pred HHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc---------------hHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999998888887877777766666532 11222222222222222 22233445
Q ss_pred hhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHH
Q 016431 310 VIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVA 367 (389)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~ 367 (389)
+...+..|++.||++++++++....+..+|..+.|.+.+ .+....+.+.++...+..+
T Consensus 330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999 4555555544444333333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=188.07 Aligned_cols=296 Identities=17% Similarity=0.158 Sum_probs=188.5
Q ss_pred chhhchHHHHhh----hhhhh-HHHHhhHHHHHHHHHHHhccc------hhHHHHHHHHhhhcccccccccceeeeecc-
Q 016431 2 VGAIASGQIAEY----IGRKG-SLMIAAVPNIIGWLIISFSKD------SSFLFMGRLLEGFGVGVISYTVPVYIAEIA- 69 (389)
Q Consensus 2 ig~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~- 69 (389)
+.+|+.|+++|| +|||| .++.+....+++.+++...++ ...+++.+++.+++.+...+...++..|..
T Consensus 50 i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 129 (437)
T TIGR00792 50 ITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITL 129 (437)
T ss_pred hccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccC
Confidence 578999999997 68755 677788888888888877764 346677888889988888778888889987
Q ss_pred CcccccchhhhhHHHHHHHHHHHHHhcc-----------ccchHHHHHhhhHHHHHHHH-HHhcccCCchhhHhcCChhH
Q 016431 70 PQNMRGSLGSVNQLSVTIGIMLAYLLGL-----------FVNWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTED 137 (389)
Q Consensus 70 ~~~~r~~~~~~~~~~~~lG~~l~~~i~~-----------~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~ 137 (389)
+++||++..++.+.+..+|..+++.+.. ..+||+.+.+.++++++..+ ..+..||+++.. .+
T Consensus 130 ~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~-----~~- 203 (437)
T TIGR00792 130 DPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEI-----PK- 203 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCC-----Cc-
Confidence 5688999999988888887665443321 12799999888887776644 445667654200 00
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cC
Q 016431 138 FESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AG 216 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (389)
+++++.+..+.++++++++.++.......+.... ......+.+++.+. .+
T Consensus 204 -------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 254 (437)
T TIGR00792 204 -------------------------NIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLA----FNIKNGVQVYYFTYVLG 254 (437)
T ss_pred -------------------------ccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHHHcchhheeEeeecC
Confidence 0000111123345566666554444333333322 22222233333322 12
Q ss_pred CCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhh
Q 016431 217 ISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLV 294 (389)
Q Consensus 217 ~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (389)
++.. .......+..+++.++.+++.||+|+|+....+..+..++...+.+.. . ..........
T Consensus 255 -~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~ 319 (437)
T TIGR00792 255 -DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG---S-----------NLPLILVLII 319 (437)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc---h-----------hHHHHHHHHH
Confidence 1222 334445788889999999999999999998888777766655543210 0 0111111112
Q ss_pred heeeeeecccccchhhhhccccc-------cchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 295 TVVISFSLGVGAIPWVIMSEILP-------VNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
+...+. ....+..+++.+|..| ++.+|...|+.+....+|..+++.+.|.+.+
T Consensus 320 ~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 320 LAGFGQ-NFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 2224555677777765 5567999999999999999999999999987
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=183.43 Aligned_cols=361 Identities=12% Similarity=0.063 Sum_probs=205.9
Q ss_pred chhhchHHHHhh-hhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCccc---ccch
Q 016431 2 VGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM---RGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~ 77 (389)
++++++|+++|| +|||+++.++.++.+++.++.+++++++.+.+.|++.|+|.|...+...++++|++|+++ |+++
T Consensus 63 ~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~ 142 (475)
T TIGR00924 63 LLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG 142 (475)
T ss_pred HHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccce
Confidence 567899999999 899999999999999999999999999999999999999999999999999999998764 8889
Q ss_pred hhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhccc----CCchhhHhcCChhHHHHHHHHH----
Q 016431 78 GSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIP----ESPRWLAKMGMTEDFESSLQVL---- 145 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~----e~p~~~~~~~~~~~~~~~~~~~---- 145 (389)
+++.+.+.++|.++||.+++++ +||+.|.+.++..++..+...+.+ +.|+.. ++.+.++.+......
T Consensus 143 ~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 221 (475)
T TIGR00924 143 FTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLA 221 (475)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHH
Confidence 9999999999999999999887 899999987765555544443333 222100 000000000000000
Q ss_pred ---------hcCCcchhHHHHHH------HHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHH
Q 016431 146 ---------RGFDTDISIEVNEI------KRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSN 210 (389)
Q Consensus 146 ---------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (389)
....+......... .........++..+..+..|............+.+.. +.......+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~----~~Q~~s~l~l 297 (475)
T TIGR00924 222 ALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVL----YAQMPTSLNF 297 (475)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHH----HHHhhhHHHH
Confidence 00000000000000 0000000000000001101111111112222222222 2222222232
Q ss_pred HHhh-cCCC--C----ccHHHHHHHHHHHHHHHHHHHHHhhhch-----hHH--HHHHhHHHHHHHHHHHHHHhhccccc
Q 016431 211 IFAN-AGIS--S----SNVATFGLGVVQVVATGVNTWLMDKAGR-----RLL--LLISSSGMAASFFLVSVAFFLEGFVS 276 (389)
Q Consensus 211 ~~~~-~~~~--~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (389)
+.++ .+.+ . .........+..++..++..++..|.+| +.. +..+.++.++++..+.+.....+.
T Consensus 298 ~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~-- 375 (475)
T TIGR00924 298 FADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADA-- 375 (475)
T ss_pred HHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC--
Confidence 2222 2221 1 1244555566666666554443333333 232 356777777776666543221111
Q ss_pred CCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh-ccchhh
Q 016431 277 EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW-SSGGTF 355 (389)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~ 355 (389)
+. ..+.+..+....+...+ .....|..+++..+..|++.||+.+|+......+|..+++.+.....+. +....+
T Consensus 376 -~~---~~s~~~~i~~~~~~~~g-e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~ 450 (475)
T TIGR00924 376 -GG---LTSPWFMVLIYLFQTLG-ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVF 450 (475)
T ss_pred -CC---ccCHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 00 01112222222222222 3455677789999999999999999999999999999999988877663 344455
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 016431 356 LIYGIVCAFTVAFVSLWVP 374 (389)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~ 374 (389)
...++++.+.+++..+..|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 451 GKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-24 Score=190.92 Aligned_cols=348 Identities=16% Similarity=0.214 Sum_probs=222.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHH-HHHHhhhcccccccccceeeeeccCcccccchhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM-GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 80 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 80 (389)
+.+|+.+.+.||||.|++.+.|.++.+++.++..+++++|++++ .-++.|+|.+..+......+..|+ +|+|+.+.|+
T Consensus 96 ~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gi 174 (509)
T KOG2504|consen 96 LAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGI 174 (509)
T ss_pred HhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhh
Confidence 45789999999999999999999999999999999999998887 558999999999999999999888 5669999999
Q ss_pred hHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcc-cCCchhhHhcCChhHHHH-------HH---H-H
Q 016431 81 NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI-PESPRWLAKMGMTEDFES-------SL---Q-V 144 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~-------~~---~-~ 144 (389)
...+.++|.++-|.+..++ |||+.+++.+.+.+-.++..... |.+++.... +.++.+. .. . .
T Consensus 175 a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 252 (509)
T KOG2504|consen 175 AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRNSAASVESTPKPVELR 252 (509)
T ss_pred hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhccccccccccccccccc
Confidence 9999999999888888877 99999988877776555444443 323221111 0000000 00 0 0
Q ss_pred HhcCCcchh----HHHHHHHHHhhhcc--ccccchH---HHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhc
Q 016431 145 LRGFDTDIS----IEVNEIKRSVASSS--RRTAIRF---AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA 215 (389)
Q Consensus 145 ~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (389)
....+.... .+..+.++..++.. ..+.... .++++++.+ +...+.......++.....+++.+.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~f----l~~~~~~~~~~~g~~~p~~~l~~~~~~~ 328 (509)
T KOG2504|consen 253 ISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKF----LLLALSNLFAYLGFNVPFVYLPSYAKSL 328 (509)
T ss_pred cccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchH----HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000000000 00001111111001 1111111 355665443 3333444444445667778888888888
Q ss_pred CCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhch--hHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHH
Q 016431 216 GISSSN--VATFGLGVVQVVATGVNTWLMDKAGR--RLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLV 291 (389)
Q Consensus 216 ~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (389)
+.++.+ ......++..++++++.|++.|+... +....++.+..+++...+.... ....+.
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~----------------~~~~l~ 392 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT----------------TYVGLI 392 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc----------------cHHHHH
Confidence 887766 66667789999999999999999774 3444444444444443333210 011111
Q ss_pred Hhhheeeeeecc-cccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hc-cchhhHHHHHHHHHHHHH
Q 016431 292 GLVTVVISFSLG-VGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS-SGGTFLIYGIVCAFTVAF 368 (389)
Q Consensus 292 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~-~~~~~~~~~~~~~~~~~~ 368 (389)
....+ .++..+ ........+.|+.+.++-..+.|+...++.++..+||++.|.+.| .+ +...++..+...++. ..
T Consensus 393 ~~~~~-fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s-~~ 470 (509)
T KOG2504|consen 393 VFSIL-FGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLS-AV 470 (509)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHH-HH
Confidence 11111 122222 233334688899999999999999999999999999999999998 44 444455555544444 43
Q ss_pred HHhhcc
Q 016431 369 VSLWVP 374 (389)
Q Consensus 369 ~~~~~~ 374 (389)
+++..+
T Consensus 471 ~~~~~~ 476 (509)
T KOG2504|consen 471 LLLILR 476 (509)
T ss_pred HHHHhH
Confidence 443333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=161.88 Aligned_cols=307 Identities=15% Similarity=0.149 Sum_probs=216.9
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHH---hccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLG 78 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 78 (389)
+++++.|.+.+|+|+|+.+++|+.++++++.+.. ...++..++++-++.|.|.+.....++.+++...|+++..+.+
T Consensus 63 ~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rl 142 (422)
T COG0738 63 IMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRL 142 (422)
T ss_pred HHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHH
Confidence 5688999999999999999999999999999994 5678999999999999999999999999999999998889999
Q ss_pred hhhHHHHHHHHHHHHHhcccc-----------------------chHHHHHhhhHHHHHHHHHHhc--ccCCchhhHhcC
Q 016431 79 SVNQLSVTIGIMLAYLLGLFV-----------------------NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMG 133 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~-----------------------~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~ 133 (389)
++.+...++|.+++|++++.+ .||++|...+...++..+.... .||.++
T Consensus 143 nl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~------ 216 (422)
T COG0738 143 NLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV------ 216 (422)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc------
Confidence 999999999999999999876 3677777766655555444443 333321
Q ss_pred ChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh
Q 016431 134 MTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA 213 (389)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (389)
..+++.++......+++++++.+...+..+++...+ .....+++.+..
T Consensus 217 ----------------------------~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~E----va~gsfl~~y~~ 264 (422)
T COG0738 217 ----------------------------AAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAE----VAIGSFLVSYLE 264 (422)
T ss_pred ----------------------------ccccccccccchHHHHHhChHHHHHHHHHHHHHhHH----HHHHHHHHHHHH
Confidence 001111111125677888888777777777777665 344555566665
Q ss_pred h-cCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHH
Q 016431 214 N-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSL 290 (389)
Q Consensus 214 ~-~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (389)
+ .|.+..+ ........+.++|++++.++.+|+...|.+....++..+.++...+. .+ ...+
T Consensus 265 ~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~---~g-------------~v~~ 328 (422)
T COG0738 265 ELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI---GG-------------VVAL 328 (422)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh---cC-------------hHHH
Confidence 5 5665555 55666778899999999999999998888776655444433333321 11 1222
Q ss_pred HHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHH
Q 016431 291 VGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFT 365 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~ 365 (389)
....+ ...+.....|..++...+..| ++. ...|..-....+|+++-|++.|++.| .+....+......|.+.
T Consensus 329 ~~l~~-ig~F~simfPTIfslal~~l~-~~t-s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~ly 401 (422)
T COG0738 329 YALFL-IGLFNSIMFPTIFSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLY 401 (422)
T ss_pred HHHHH-HHHHhHHHHHHHHHHHHhccC-ccc-cccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 22222 223345667888899999998 333 33344445566899999999999999 44444444344444443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-22 Score=171.06 Aligned_cols=323 Identities=13% Similarity=0.118 Sum_probs=194.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|+++|+.. +...++..|+|++||+++.++.
T Consensus 77 l~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~ 155 (511)
T TIGR00806 77 AVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYS 155 (511)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc---chHHHHHh---hhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHH
Q 016431 82 QLSVTIGIMLAYLLGLFV---NWRVLAVL---GVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIE 155 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~---~wr~~f~~---~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
.++..+|.++++++++.+ |||+.+.+ ......++++..+++|..++.+.-+++.+.......+.....++...+
T Consensus 156 ~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~ 235 (511)
T TIGR00806 156 RAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGK 235 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccc
Confidence 999999999999998877 88866544 344445567777889976665543332211000000000000000000
Q ss_pred HHH-HHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc---HHHHHHHHHH
Q 016431 156 VNE-IKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN---VATFGLGVVQ 231 (389)
Q Consensus 156 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 231 (389)
..+ .+......-..-....++..+++.... ..+.+....++++.+..|...+.++..-++.. ..-.+..+.+
T Consensus 236 ~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~----WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllg 311 (511)
T TIGR00806 236 LEDYLGTCRDSFLVRMLSELVTIYRNPQLLL----WSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLG 311 (511)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhcCcchhh----hhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHH
Confidence 000 000000000111222333344443332 23333444445677777777777665332221 4444555667
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhh
Q 016431 232 VVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVI 311 (389)
Q Consensus 232 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (389)
.+..+..|++-.+..+.-.+.++.....-+.+++ +... ..+.+....+..++...+.+. .++...-
T Consensus 312 a~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~-~m~~------------t~~Iw~~Y~~yvlf~~~y~fl-itia~~~ 377 (511)
T TIGR00806 312 AITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVF-WMSQ------------SHDIWVLYVTYVLFRGIYQFL-VPIATFQ 377 (511)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhh-hhhc------------ccchHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 7788888888555533222222222111111111 1111 122334444444444444332 3344455
Q ss_pred hccccccchhhhhhhHHHHHHHHHHHHHHHHh
Q 016431 312 MSEILPVNIKSLAGSVATLANWLVSWIVTMTA 343 (389)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 343 (389)
+++....+.-|..+|++++..-+-..+-..+.
T Consensus 378 iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 378 IASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred HHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 66666777778999999887766665555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=168.21 Aligned_cols=352 Identities=14% Similarity=0.127 Sum_probs=206.3
Q ss_pred chhhchHHHHh----hhhhhhHHHHh-hHHHHHHHHHHHhccchh-----------------HHHHHHHHhhhccccccc
Q 016431 2 VGAIASGQIAE----YIGRKGSLMIA-AVPNIIGWLIISFSKDSS-----------------FLFMGRLLEGFGVGVISY 59 (389)
Q Consensus 2 ig~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~r~l~G~~~~~~~~ 59 (389)
+.+|+.|.++| |+||||.++++ .....++.++.+++++.. .++++-.+..++.....+
T Consensus 54 i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~ 133 (477)
T TIGR01301 54 LVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG 133 (477)
T ss_pred HHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999 59999998874 666677777887876643 222233344457777788
Q ss_pred ccceeeeeccCcccc--cchhhhhHHHHHHHHHHHHHhcccc-------------------chHHHHHhhhHHHHHH-HH
Q 016431 60 TVPVYIAEIAPQNMR--GSLGSVNQLSVTIGIMLAYLLGLFV-------------------NWRVLAVLGVLPCTLL-IP 117 (389)
Q Consensus 60 ~~~~~i~~~~~~~~r--~~~~~~~~~~~~lG~~l~~~i~~~~-------------------~wr~~f~~~~~~~~~~-~~ 117 (389)
...+++.|.+|+++| +.+.++.+...++|.++|+.+++.. +.|..|++.++..++. .+
T Consensus 134 p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~ 213 (477)
T TIGR01301 134 PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYI 213 (477)
T ss_pred HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 889999999998865 5789999999999999999888653 4578888888766666 45
Q ss_pred HHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcc-cchhHHHHHHHHHHH
Q 016431 118 GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR-YWFPLMIGIGLLVLQ 196 (389)
Q Consensus 118 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 196 (389)
..+..+|.|.... ++.++. +. ++.++.+....++++++.- ...+.+...+...+.
T Consensus 214 t~~~v~E~~~~~~--~~~~~~-----~~-----------------~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqff 269 (477)
T TIGR01301 214 ALSAVKENPLIGS--DDFINS-----EA-----------------APPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCL 269 (477)
T ss_pred HeeeeeccCCCcc--ccchhh-----hc-----------------ccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 5566888763110 000000 00 0000000111222332211 111222223333333
Q ss_pred hhcChhHHHHHHHHHHhh--cCCCCc------------cHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHhHHHHHH
Q 016431 197 QLSGINGVLFYSSNIFAN--AGISSS------------NVATFGLGVVQVVATGVNTWLMDKAGR-RLLLLISSSGMAAS 261 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~ 261 (389)
.+.+++.+..|.+.+..+ ++.++. .......++...+.+++..++.+|+|+ |+....+.++.+++
T Consensus 270 sW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~ 349 (477)
T TIGR01301 270 NWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAIC 349 (477)
T ss_pred HHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 333344444554544432 121111 123334455556777788888999985 66667887777777
Q ss_pred HHHHHHHHhhccc---ccCCccchhHH---HHHHHHHhhheeeeeecccccchhhhhcccccc--chhhhhhhHHHHHHH
Q 016431 262 FFLVSVAFFLEGF---VSEDSRFYSIL---GILSLVGLVTVVISFSLGVGAIPWVIMSEILPV--NIKSLAGSVATLANW 333 (389)
Q Consensus 262 ~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~ 333 (389)
+....+.....+. .+.++...... ....+..+...+..+ .....+.++++++..|+ +..|..+|+.|.+..
T Consensus 350 l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~-A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~ 428 (477)
T TIGR01301 350 LAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPL-AITYSIPFALASIRSSNLGAGQGLSMGVLNLAIV 428 (477)
T ss_pred HHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHH-HHHHHHhHHHHHHHccccCCCCcchhhHHHHHHH
Confidence 7666544321110 00000000000 122222222222222 23456778999999885 455999999999999
Q ss_pred HHHHHHHHHhHHHhh-hc--cchhhHHHHHHHHHHHHHHHhhcccCCC
Q 016431 334 LVSWIVTMTANFLLD-WS--SGGTFLIYGIVCAFTVAFVSLWVPETKG 378 (389)
Q Consensus 334 ~g~~~~~~~~g~l~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
+.+.+.....|.+.+ .+ ....+.+.++..++.++.+.+.+|+++.
T Consensus 429 lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 429 IPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999998888666 22 2334445555556666677777887654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=181.93 Aligned_cols=250 Identities=15% Similarity=0.161 Sum_probs=164.4
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc-------------------------------------------
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK------------------------------------------- 38 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 38 (389)
+++++.|+++||+||||.+.++.++++++++++++.+
T Consensus 83 ~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 162 (633)
T TIGR00805 83 LLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSEC 162 (633)
T ss_pred HHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccccccc
Confidence 5678999999999999999999999999999998763
Q ss_pred --------chhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc-----c-----
Q 016431 39 --------DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----N----- 100 (389)
Q Consensus 39 --------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~-----~----- 100 (389)
.+..++++|+++|+|.+..++...+++.|++|+++|++++++++.+..+|.++|+++++.+ +
T Consensus 163 ~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~ 242 (633)
T TIGR00805 163 QKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVN 242 (633)
T ss_pred ccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCC
Confidence 2456788999999999999999999999999999999999999999999999999888754 1
Q ss_pred ----------------hHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHHHHHHHhh
Q 016431 101 ----------------WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVA 164 (389)
Q Consensus 101 ----------------wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (389)
||..|++.+++.++..+.++++|++.+....+.+.++.++. . .+...+.. .....
T Consensus 243 ~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~--~---~~~~~~~~----~~~~~ 313 (633)
T TIGR00805 243 TEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETE--K---LEKSEDKS----RKKNS 313 (633)
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhh--c---cccccccc----chhhh
Confidence 67778887777777655566666543211000000000000 0 00000000 00000
Q ss_pred hccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCccH--HHHHHHH-HHHHHHHHHHH
Q 016431 165 SSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSNV--ATFGLGV-VQVVATGVNTW 240 (389)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~-~~~~~~~~~g~ 240 (389)
...++.....+.+++++.+....+...+.. ..+..+..+.|.++++ .+.++... ......+ +.+++.+++|+
T Consensus 314 ~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~----~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~ 389 (633)
T TIGR00805 314 DITKDFPKIIKRLLCNPIYMLVILAQVIDS----LAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGF 389 (633)
T ss_pred hhHHHHHHHHHHHHcCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhh
Confidence 001112234556777765444333333332 3355666778877764 67765553 2222333 56789999999
Q ss_pred HHhhhc--hhHHHHHHhHHHHHHHHH
Q 016431 241 LMDKAG--RRLLLLISSSGMAASFFL 264 (389)
Q Consensus 241 l~d~~~--~~~~~~~~~~~~~~~~~~ 264 (389)
++||++ .|+.+..+.++..++.+.
T Consensus 390 l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 390 IMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred eeeeecccHHHHHHHHHHHHHHHHHH
Confidence 999987 456666666655555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-20 Score=164.93 Aligned_cols=310 Identities=11% Similarity=0.006 Sum_probs=179.6
Q ss_pred hhch-HHHHhhhhhhhHHHHhhHHH-HHHHHHHH-h--ccc-hhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 4 AIAS-GQIAEYIGRKGSLMIAAVPN-IIGWLIIS-F--SKD-SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 4 ~~~~-g~l~dr~Grr~~l~~~~~~~-~~~~~~~~-~--~~~-~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
+|++ ++..||+||||..++...+. +......+ + ..+ ..+++..-++.++..+...+...++..|..++++++..
T Consensus 55 ~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~ 134 (390)
T TIGR02718 55 APLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKG 134 (390)
T ss_pred HHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHH
Confidence 4455 44677789999876655332 22222222 1 222 33444555666677777777888888888888888888
Q ss_pred hhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchh
Q 016431 78 GSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDIS 153 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (389)
.+....+..+|.++++...+++ +||..|++.++..++..+..++++|+++. +++.
T Consensus 135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~------------------ 193 (390)
T TIGR02718 135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEA------------------ 193 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---cccc------------------
Confidence 8888888889999988665554 99999999988777665555555443210 0000
Q ss_pred HHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCccHHH--HHHH-HH
Q 016431 154 IEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVAT--FGLG-VV 230 (389)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~ 230 (389)
++++..+.++.+|++..+.......+..... .....+.+.+.++.|.+..+... ...+ ..
T Consensus 194 -------------~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~ 256 (390)
T TIGR02718 194 -------------PLARRASLFRFFRRPLAWSLLALALLSAMTA----VSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVT 256 (390)
T ss_pred -------------chhhHHHHHHHHcCcCHHHHHHHHHHHHHHH----HHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHH
Confidence 0001123456666665544444333333322 22333455666677887666322 2233 45
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhh
Q 016431 231 QVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWV 310 (389)
Q Consensus 231 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (389)
.+++.++.|++.||+++|+.+..+..+.......... ...... . ...........+.....+.. .+....
T Consensus 257 ~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~-~~~~~~--~------~~~~~~~~~~~~~~~~~g~~-~~~~~~ 326 (390)
T TIGR02718 257 VLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFA-QAAFWL--A------PGIAVAWSCSAFGSLITGIT-SVAIYT 326 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHccc--C------CcHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5677899999999999999887766554332222211 110000 0 00011111111101111111 233335
Q ss_pred hhcccccc-chhhhhhhHHHHHHHHHHHHHHHHhHHHhhh-ccchhhHHHHHH
Q 016431 311 IMSEILPV-NIKSLAGSVATLANWLVSWIVTMTANFLLDW-SSGGTFLIYGIV 361 (389)
Q Consensus 311 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~~ 361 (389)
...+..++ +.+++.+++.+...++|..++|.+.|.+.|. ++...+...+++
T Consensus 327 ~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~ 379 (390)
T TIGR02718 327 AFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVL 379 (390)
T ss_pred HHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 55555555 7899999999999999999999999999994 443445444443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-20 Score=165.36 Aligned_cols=329 Identities=14% Similarity=0.153 Sum_probs=187.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
++.++.|+++|.||||.+++.+.++..+|+++++.++|...++.+-.+.|+|.|.... ....++|..|.|.|.....+.
T Consensus 93 v~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~ 171 (599)
T PF06609_consen 93 VSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIA 171 (599)
T ss_pred HHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHH
Confidence 4678999999999999999999999999999999999999999999999999877764 455689999999998777666
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCCh---hHHHHHHHHHh--------
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMT---EDFESSLQVLR-------- 146 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~---~~~~~~~~~~~-------- 146 (389)
....-.....++.++..+ +|||.|++..+...+.++..++.-.+|++...+++. .+..+.++.+-
T Consensus 172 ~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl 251 (599)
T PF06609_consen 172 SIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGL 251 (599)
T ss_pred HHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHH
Confidence 655545444566666544 899999998887666544433322223322222211 11111111110
Q ss_pred ---------cCCc----chhHHHHHHH---------HHhhh-ccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhH
Q 016431 147 ---------GFDT----DISIEVNEIK---------RSVAS-SSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 203 (389)
Q Consensus 147 ---------~~~~----~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (389)
..+. +...-..... --.|. ...+++.-..+++++++. +....+..+.....++.
T Consensus 252 ~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~---~~~~lvi~fi~G~~~~s 328 (599)
T PF06609_consen 252 ALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRG---FAALLVISFISGMNFFS 328 (599)
T ss_pred HHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchH---HHHHHHHHHHHHHHHHH
Confidence 0000 0000000000 00111 111122223445554321 11111111111111333
Q ss_pred HH-HHHHHHHhhcCCCC-----ccHHHHHHHHHHHHHHHHHHHHHhhhchhHH-HHHHhHHHHHHHHHHHHHHhhccccc
Q 016431 204 VL-FYSSNIFANAGISS-----SNVATFGLGVVQVVATGVNTWLMDKAGRRLL-LLISSSGMAASFFLVSVAFFLEGFVS 276 (389)
Q Consensus 204 ~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (389)
.. +|......-++.+. ........+++..++..+.+.+..|++|-|. ++.+..++.++..++... .
T Consensus 329 ~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~-------~ 401 (599)
T PF06609_consen 329 VNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV-------R 401 (599)
T ss_pred HHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc-------c
Confidence 33 33333332233322 2255566778888888999999998877444 445555555444443321 1
Q ss_pred CCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 277 EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
.++.. .. .....+ ...+.+....+ ....+.-..|++.-+++.|+..+++.+|+.++..++..+..
T Consensus 402 ~~n~~-~~---i~~~~l--~g~giG~~~~~-~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 402 PDNKN-AA---IAFLVL--AGFGIGGILVP-AIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred CCCcc-hH---HHHHHH--HHHhHHHHHHH-HHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11111 01 111111 11122222222 23555667899999999999999999999999999876654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-20 Score=167.73 Aligned_cols=112 Identities=19% Similarity=0.365 Sum_probs=96.7
Q ss_pred hhchHHHHhh-hhhhhHHHHhhHHHHHHHHHHHhcc-chhHHHHHHHHhhhcccccccccceeeeeccCccc--ccchhh
Q 016431 4 AIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM--RGSLGS 79 (389)
Q Consensus 4 ~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~ 79 (389)
.+++|+++|| +|||+++..+.++.+++..++++++ +.+.+.+.|+++|++.|...+...+++.|++|+++ |..+++
T Consensus 74 ~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~ 153 (500)
T PRK09584 74 VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT 153 (500)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence 3578999999 5999999999999999999999875 56677788999999999999999999999998653 456888
Q ss_pred hhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHH
Q 016431 80 VNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 115 (389)
Q Consensus 80 ~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~ 115 (389)
+++.+.++|..++|.+++++ |||+.|.+.++..++.
T Consensus 154 ~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 154 MYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 99999999999999999887 8999999887644443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=164.39 Aligned_cols=348 Identities=11% Similarity=0.063 Sum_probs=211.9
Q ss_pred hhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc------cchhHHHHHHHHhhhcccccccccceeeeeccCcccccc
Q 016431 3 GAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS 76 (389)
Q Consensus 3 g~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 76 (389)
.+++.|++.||+|||+++.++.+++++++++++++ ++++.+++.|++.|+|.+...+.+...+.+|+| ++||+
T Consensus 77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~ 155 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA 155 (591)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence 45689999999999999999999999999999997 689999999999999999888888899999996 67999
Q ss_pred hhhhhHHHHHHHHHH-HHHhcccc--chHHHHHhhhHHHHHH-HHHHhccc--CCchhhHhcCChhHHHHHHHHHhcC--
Q 016431 77 LGSVNQLSVTIGIML-AYLLGLFV--NWRVLAVLGVLPCTLL-IPGLFFIP--ESPRWLAKMGMTEDFESSLQVLRGF-- 148 (389)
Q Consensus 77 ~~~~~~~~~~lG~~l-~~~i~~~~--~wr~~f~~~~~~~~~~-~~~~~~~~--e~p~~~~~~~~~~~~~~~~~~~~~~-- 148 (389)
+.++...+.++|.++ +++...++ +|+..|++.++..++. ++...+++ +.|++..++++.++.++..++..+.
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y 235 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVY 235 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhh
Confidence 999999999999975 55555555 8998888877766665 44444444 4444433333333332221111000
Q ss_pred ------------------------------------Cc----------------------------------chhHHHHH
Q 016431 149 ------------------------------------DT----------------------------------DISIEVNE 158 (389)
Q Consensus 149 ------------------------------------~~----------------------------------~~~~~~~~ 158 (389)
+. +.+.+..+
T Consensus 236 ~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~ 315 (591)
T PTZ00207 236 LKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKE 315 (591)
T ss_pred hhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccc
Confidence 00 00000000
Q ss_pred HHH------Hhhh-----c-c---ccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhc-CC-CCc-
Q 016431 159 IKR------SVAS-----S-S---RRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GI-SSS- 220 (389)
Q Consensus 159 ~~~------~~~~-----~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~- 220 (389)
..+ ..+. + + .+...++.+.+++..+| ..+...++....-......+.++.+.. |. .+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~W----ll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~ 391 (591)
T PTZ00207 316 HVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLW----CLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDA 391 (591)
T ss_pred cccccccccccccccccccccCCCCCCcchHHHHHhchhHH----HHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcc
Confidence 000 0000 0 0 00111344444444433 334444444444445555666667666 55 222
Q ss_pred -c-HHHHHHHHHHHHHHHHHHHHHhhhchhH---------HHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHH
Q 016431 221 -N-VATFGLGVVQVVATGVNTWLMDKAGRRL---------LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILS 289 (389)
Q Consensus 221 -~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (389)
. ....+.++.+.+|++..|.+.....+|+ .+.+..+ +.++.+++..... ....
T Consensus 392 ~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p---------------~~~L 455 (591)
T PTZ00207 392 LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLP---------------KAAL 455 (591)
T ss_pred ceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCC---------------ccHh
Confidence 2 2567778999999999998873322222 1222222 4444444443210 0122
Q ss_pred HHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHH-HHHhHHHhhhc--------------cchh
Q 016431 290 LVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIV-TMTANFLLDWS--------------SGGT 354 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~-~~~~g~l~~~~--------------~~~~ 354 (389)
.+...+.+.+++. ..++....++|+|. ++-|+-.-+.....-+|+.+- -.++|.++|.. ...+
T Consensus 456 ~~~~~lvg~~~G~-~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~ 533 (591)
T PTZ00207 456 PLPYFIAAFANGF-MAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMP 533 (591)
T ss_pred HHHHHHHHHHhhH-hHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhH
Confidence 2333333333332 23455589999999 888888888888888888776 67888888721 1246
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 016431 355 FLIYGIVCAFTVAFVSLWV 373 (389)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~ 373 (389)
+++.++++.+..+......
T Consensus 534 ~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 534 LAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred HHHHHHHHHHHHHHHhhee
Confidence 7888887777766655443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=143.68 Aligned_cols=294 Identities=20% Similarity=0.172 Sum_probs=209.3
Q ss_pred hhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhH
Q 016431 3 GAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 82 (389)
Q Consensus 3 g~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 82 (389)
.+++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|.|.+...+..+..+.+.+|++ -+..++++.
T Consensus 63 ~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs 140 (395)
T COG2807 63 FAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYS 140 (395)
T ss_pred HHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHH
Confidence 46788999999999999999999999999999887 7888889999999999999999999999999754 799999999
Q ss_pred HHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHH
Q 016431 83 LSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 157 (389)
Q Consensus 83 ~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (389)
+..++|..+++.+.-.+ +||....+-+.+++++++.|+.-...++
T Consensus 141 ~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~------------------------------ 190 (395)
T COG2807 141 TSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ------------------------------ 190 (395)
T ss_pred HHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccc------------------------------
Confidence 99999888877666555 7999999999999888777663221100
Q ss_pred HHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHH
Q 016431 158 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVAT 235 (389)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 235 (389)
....+.+..+...+++++.- +...+++..+...++....|+|.++.|.|+++.+ .......+.+++.+
T Consensus 191 ------~~~~~~~~~~~~~vw~~~~a----W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ 260 (395)
T COG2807 191 ------AASIATKLVSVRKVWRSPLA----WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTA 260 (395)
T ss_pred ------ccccccccccccccccCchh----HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHH
Confidence 00011111122335555543 3444445555555788889999999999998776 56667788999999
Q ss_pred HHHHHHHhhh-chhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhcc
Q 016431 236 GVNTWLMDKA-GRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 314 (389)
Q Consensus 236 ~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (389)
+....+.+|. ++|+.......++.++...+.+. .....+.. ..+++.+. .+..|.....+.+
T Consensus 261 ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~-------------P~~~~~lw---~~llG~G~-G~~F~laL~li~~ 323 (395)
T COG2807 261 LLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA-------------PGQLPILW---ALLLGLGQ-GGAFPLALTLILL 323 (395)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-------------hhhHHHHH---HHHHhCcc-chHHHHHHHHHHh
Confidence 9999999975 45666666666666665554421 00111111 12222222 2334555455555
Q ss_pred cc-ccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhh
Q 016431 315 IL-PVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTF 355 (389)
Q Consensus 315 ~~-~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~ 355 (389)
.. .++..+.-.|+.+..+++-++.||.+.|++.| .+++...
T Consensus 324 rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~ 366 (395)
T COG2807 324 RSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAP 366 (395)
T ss_pred hcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHH
Confidence 44 34556777899999999999999999999999 4444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=164.22 Aligned_cols=294 Identities=14% Similarity=0.040 Sum_probs=173.9
Q ss_pred chhhchHHHHhh----hhhh-hHHHHhhHHHHHHHHHHHhccc------hhHHHHHHHHhhhcccccccccceeeeecc-
Q 016431 2 VGAIASGQIAEY----IGRK-GSLMIAAVPNIIGWLIISFSKD------SSFLFMGRLLEGFGVGVISYTVPVYIAEIA- 69 (389)
Q Consensus 2 ig~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~- 69 (389)
+..|+.|.++|| +||| +.++.+.+..+++..+....++ ...+++...+.+.+.........++..|+.
T Consensus 60 i~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~ 139 (444)
T PRK09669 60 VTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITN 139 (444)
T ss_pred cccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcC
Confidence 567899999998 7875 4555677777777766655553 345566666667666667777778999988
Q ss_pred CcccccchhhhhHHHHHHHHHHHHHhcc----cc-------chHHHHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhH
Q 016431 70 PQNMRGSLGSVNQLSVTIGIMLAYLLGL----FV-------NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTED 137 (389)
Q Consensus 70 ~~~~r~~~~~~~~~~~~lG~~l~~~i~~----~~-------~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~ 137 (389)
+++||.+..++......+|..+++.+.. .+ +|+..+.+.++++++..+. .+..+|.++. +
T Consensus 140 ~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~----~---- 211 (444)
T PRK09669 140 DPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP----E---- 211 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC----C----
Confidence 5688998888887777777666654322 11 6787777777666555433 3344543210 0
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCC
Q 016431 138 FESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGI 217 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (389)
++++.+.....++.++++.++.......+...... .......++.+ ...
T Consensus 212 --------------------------~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~----~~~~~~~y~~~-~~~ 260 (444)
T PRK09669 212 --------------------------VDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVV----TRGGATLYYVN-YVL 260 (444)
T ss_pred --------------------------CcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHH----HHhhhhheeee-eec
Confidence 00011123445666777776655444333322221 11112222222 112
Q ss_pred CCcc---HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhh
Q 016431 218 SSSN---VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLV 294 (389)
Q Consensus 218 ~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (389)
+..+ .......+..+++.++.+++.||+|+|+....+..+..+....+... .. .......+...
T Consensus 261 ~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~---~~----------~~~~~~~~~~~ 327 (444)
T PRK09669 261 LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI---PP----------SNVWLIFALNI 327 (444)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---Cc----------chHHHHHHHHH
Confidence 2222 23333456677888899999999999998877765544333222211 00 01111122222
Q ss_pred heeeeeecccccchhhhhccccc-------cchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 295 TVVISFSLGVGAIPWVIMSEILP-------VNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
+...+. ....+..+++.+|..+ ++..|..+|..+....+|..+++.+.|.+.+
T Consensus 328 i~g~~~-~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 328 LFNFIQ-NLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHHHHH-HHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 2344666788888875 2334567888999999999999999999887
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=156.20 Aligned_cols=341 Identities=18% Similarity=0.232 Sum_probs=206.5
Q ss_pred hhhchHHHHhhhhhhhHHHH-hhHHHHHHHHHHHhc-c-chhHHHHHHHHhhhcccccccccceeeeeccCcccc-----
Q 016431 3 GAIASGQIAEYIGRKGSLMI-AAVPNIIGWLIISFS-K-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR----- 74 (389)
Q Consensus 3 g~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~-~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r----- 74 (389)
-.|+.|.++|+-|+||.++. ...+..+++.+..+. + +++...+.-++.-++.+......++++.|..+++++
T Consensus 86 l~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~ 165 (477)
T PF11700_consen 86 LAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAR 165 (477)
T ss_pred HHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhh
Confidence 46889999999987776554 555555666666663 3 344444455556667777788889999999999888
Q ss_pred ---------------------cchhhhhHHHHHHHHHHHHHhcccc------------chHHHHHhhhHHHHH-HHHHHh
Q 016431 75 ---------------------GSLGSVNQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTL-LIPGLF 120 (389)
Q Consensus 75 ---------------------~~~~~~~~~~~~lG~~l~~~i~~~~------------~wr~~f~~~~~~~~~-~~~~~~ 120 (389)
++..+.-....++|.++.-.+...+ +-|..+.+.++--++ .+...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~ 245 (477)
T PF11700_consen 166 EPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFL 245 (477)
T ss_pred hhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 8998888888888888776655443 247777777765444 466677
Q ss_pred cccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcC
Q 016431 121 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 200 (389)
Q Consensus 121 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (389)
++||.|+....++....... .-++-....++..+.+.... +.+..+...-+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~-------------------------g~~~l~~t~k~~~~~~~~~~----fLia~~l~~dg 296 (477)
T PF11700_consen 246 WLPDRPGPRPLPSGSSYLRF-------------------------GFKRLWRTFKEIRKLRQLFL----FLIAYFLYSDG 296 (477)
T ss_pred hCCCCCCCCCCCcchhHHHH-------------------------HHHHHHHHHHHHHhChHHHH----HHHHHHHHHHH
Confidence 78887642000000000000 00111223333433333333 33333333334
Q ss_pred hhHHHHHHHHHHh-hcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchh--HHHHHHhHHHHHHHHHHHHHHhhcccc
Q 016431 201 INGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR--LLLLISSSGMAASFFLVSVAFFLEGFV 275 (389)
Q Consensus 201 ~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (389)
.+.+......+.. +.|++..+ ...+...+.+++|+++.+++.||+|.| +.+..+.....+..+.-.+.......
T Consensus 297 ~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~- 375 (477)
T PF11700_consen 297 VNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFF- 375 (477)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhccc-
Confidence 5555555555554 67888777 555666899999999999999999988 66665554443322221111111100
Q ss_pred cCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchh
Q 016431 276 SEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGT 354 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~ 354 (389)
..+ +.+. +.......+.+..+..+..-++.+|+.|+++.+..+|++...+...+.+||.+.|.+.+ .+....
T Consensus 376 g~~-~~~~------f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~ 448 (477)
T PF11700_consen 376 GLK-SPWE------FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRY 448 (477)
T ss_pred Ccc-cHHH------HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 000 0111 11111112222345567778999999999999999999999999999999999999999 332333
Q ss_pred hHHHHHHHHHHHHHHHhhcccCCCCC
Q 016431 355 FLIYGIVCAFTVAFVSLWVPETKGRS 380 (389)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (389)
-+....+..+.++++....+.+|+++
T Consensus 449 g~~~l~~lf~~gl~ll~~v~~~~g~~ 474 (477)
T PF11700_consen 449 GFLFLLVLFLIGLILLFFVDVEKGRE 474 (477)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhh
Confidence 33333334444455555566555543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-19 Score=157.91 Aligned_cols=299 Identities=17% Similarity=0.203 Sum_probs=203.9
Q ss_pred chhhchHHHHh----hhhhhhHH-HHhhHHHHHHHHHHHhc-c-------chhHHHHHHHHhhhcccccccccceeeeec
Q 016431 2 VGAIASGQIAE----YIGRKGSL-MIAAVPNIIGWLIISFS-K-------DSSFLFMGRLLEGFGVGVISYTVPVYIAEI 68 (389)
Q Consensus 2 ig~~~~g~l~d----r~Grr~~l-~~~~~~~~~~~~~~~~~-~-------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~ 68 (389)
+..|+.|.++| |+||||.. +.+....+++.+++... | ....+.+..++..++.........++..|.
T Consensus 52 i~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~l 131 (428)
T PF13347_consen 52 ITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPEL 131 (428)
T ss_pred hcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccc
Confidence 45688999999 89977654 46888888888888766 4 223456777777999999999999999999
Q ss_pred cC-cccccchhhhhHHHHHHHHHHHHHhcccc-----------chHHHHHhhhHHHHHHH-HHHhcccCCchhhHhcCCh
Q 016431 69 AP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMT 135 (389)
Q Consensus 69 ~~-~~~r~~~~~~~~~~~~lG~~l~~~i~~~~-----------~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~ 135 (389)
.+ ++||.+..+.-..+..+|.++...+...+ +|++...+.+++.++.. +..+..+|.++
T Consensus 132 t~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~-------- 203 (428)
T PF13347_consen 132 TPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV-------- 203 (428)
T ss_pred cccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc--------
Confidence 97 57899999999888888886554444433 48888888777777664 44555677211
Q ss_pred hHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhc
Q 016431 136 EDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA 215 (389)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (389)
+.+.++++.+.++..+++++++.++.......+.............++..+...+.
T Consensus 204 ------------------------~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~ 259 (428)
T PF13347_consen 204 ------------------------EVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE 259 (428)
T ss_pred ------------------------cccccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc
Confidence 00112223334556778888888777666666655554443334444444443222
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhh
Q 016431 216 GISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVT 295 (389)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (389)
+..........+..+++.++.++++||+|+|+.+..+..+..++.+.+.+... .......+...+
T Consensus 260 --~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~l 324 (428)
T PF13347_consen 260 --GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP-------------GSPWLVLILFIL 324 (428)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHH
Confidence 12224555667888999999999999999999999999888887777654321 011222222222
Q ss_pred eeeeeecccccchhhhhcccccc-------chhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 296 VVISFSLGVGAIPWVIMSEILPV-------NIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
.+.+. .......+++.+|..+. +..|..+|+.+....++..+++.+.+.+.+
T Consensus 325 ~gi~~-~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 325 AGIGY-GAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred hHhhh-cccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 23232 23345666888888763 345888999999999999999999998877
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=155.73 Aligned_cols=338 Identities=13% Similarity=0.098 Sum_probs=179.8
Q ss_pred chhhchHHHHhhh-hhhhHHHHhhHHHHHHHHHHHhcc-chhHHHHHHHHhhhcccccccccceeeeeccCcc--cccch
Q 016431 2 VGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN--MRGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~ 77 (389)
++++++|+++||+ ||||+++++.++.+++.++.+..+ +...+.+...+.++|.|...+...++++|.+|++ +|..+
T Consensus 60 l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sg 139 (493)
T PRK15462 60 VTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGG 139 (493)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccce
Confidence 4678999999999 999999999999999988777543 2233444444555666777777788999999875 68999
Q ss_pred hhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchh-hH-hcCChhHHHHHH--HH---Hh
Q 016431 78 GSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRW-LA-KMGMTEDFESSL--QV---LR 146 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~-~~-~~~~~~~~~~~~--~~---~~ 146 (389)
+++.+.+.++|..++|.+.+++ |||+.|.+.++..++.++......+.... .. ++++.++.+... .. ..
T Consensus 140 f~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (493)
T PRK15462 140 FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVL 219 (493)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHH
Confidence 9999999999999999999987 89999998766544444433322111000 00 000000000000 00 00
Q ss_pred c-----CC-cchhHHHHH-HHH--H-hh----hccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHH
Q 016431 147 G-----FD-TDISIEVNE-IKR--S-VA----SSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF 212 (389)
Q Consensus 147 ~-----~~-~~~~~~~~~-~~~--~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (389)
. .. .....+... ... . .. -.....+.+..|..|-.....+.+...+++.........++.+.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~v 299 (493)
T PRK15462 220 LVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFV 299 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 0 00 000000000 000 0 00 000000000000000000111111222222222222333333333322
Q ss_pred hh--cCCC-CccHHHHHHHHHHHHHHHHHHHHHhhhch--h-----HHHHHHhHHHHHHHHHHHHHHhhcccccCCccch
Q 016431 213 AN--AGIS-SSNVATFGLGVVQVVATGVNTWLMDKAGR--R-----LLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFY 282 (389)
Q Consensus 213 ~~--~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (389)
+. .|++ +.+.......+.-++.+++..++-.|..| | .-...+.++++++++.+.+.....+. +. .
T Consensus 300 d~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~---~~-~- 374 (493)
T PRK15462 300 NRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAM---YG-H- 374 (493)
T ss_pred cchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CC-C-
Confidence 21 1222 22255566667677777776666555522 2 13567777888887777654433221 11 0
Q ss_pred hHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHH-HHHHHHHHHHhHHH
Q 016431 283 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLAN-WLVSWIVTMTANFL 346 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~g~~~~~~~~g~l 346 (389)
....+ ++....+.........|+..+.++++.|++.++..+|+..... .+|..++..+.+..
T Consensus 375 -~s~~w-l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 375 -SSLPL-MVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred -cCHHH-HHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122 2222222333456778999999999999999999999986633 56666666555544
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-18 Score=147.97 Aligned_cols=299 Identities=19% Similarity=0.182 Sum_probs=192.6
Q ss_pred chhhchHHHHhhhh-hhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhh
Q 016431 2 VGAIASGQIAEYIG-RKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 80 (389)
Q Consensus 2 ig~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 80 (389)
++++++|.++||++ +||++.+..++.++........++++.+++.-++..+......|...++..+...+ +++-.+-
T Consensus 52 ~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~ 129 (400)
T PF03825_consen 52 VSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGR 129 (400)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCc
Confidence 57899999999986 67888888888888777778888999888888888888888888888888887752 3444555
Q ss_pred hHHHHHHHHHHHHH-----hccccc---hHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcch
Q 016431 81 NQLSVTIGIMLAYL-----LGLFVN---WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI 152 (389)
Q Consensus 81 ~~~~~~lG~~l~~~-----i~~~~~---wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (389)
.-...++|.+++.. +.+..+ ....+++.+...++.....+.+|+.|+.. +
T Consensus 130 iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~--~-------------------- 187 (400)
T PF03825_consen 130 IRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKR--S-------------------- 187 (400)
T ss_pred chhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCcccc--c--------------------
Confidence 55555666555532 233322 23455666555555555556678876200 0
Q ss_pred hHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcC-CCCcc--HHHHHHHH
Q 016431 153 SIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG-ISSSN--VATFGLGV 229 (389)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~ 229 (389)
.+++.++....+..+++|+|+....++...+.... ......+.+.++++.| .+... .......+
T Consensus 188 ---------~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~----~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~ 254 (400)
T PF03825_consen 188 ---------AKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGIS----HAAYYTFFSIYLQELGGYSGSTIGILWALGVV 254 (400)
T ss_pred ---------cCCCcccccchHHHHHhcCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccchhhHHHHHHHHHHH
Confidence 00001111122334577777665555544444433 3344556666777777 43333 34455668
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchh
Q 016431 230 VQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 309 (389)
Q Consensus 230 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (389)
.+++.-...+++.+|+|.|+++.++....++=..++..... +. + ...........+-+..++.. .....
T Consensus 255 aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~--------~~-~-~~~~~~~l~q~lhG~tf~~~-~~a~~ 323 (400)
T PF03825_consen 255 AEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD--------PW-P-FIVALQLLGQLLHGLTFGLF-HAASV 323 (400)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC--------Cc-H-HHHHHHHHHHhhhhHHHHHH-HHHHH
Confidence 88999999999999999999999988888777766663200 00 0 00011111112223233222 23344
Q ss_pred hhhccccccchhhhhhhHHHHH-HHHHHHHHHHHhHHHhh
Q 016431 310 VIMSEILPVNIKSLAGSVATLA-NWLVSWIVTMTANFLLD 348 (389)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~ 348 (389)
.++.+..|++.|+++.++++.. ..+|..+|..++|++.|
T Consensus 324 ~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~ 363 (400)
T PF03825_consen 324 RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD 363 (400)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8999999999999999998765 67999999999999999
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=159.11 Aligned_cols=303 Identities=13% Similarity=0.030 Sum_probs=173.7
Q ss_pred chhhchHHHHh----hhhh-hhHHHHhhHHHHHHHHHHHhccc------hhHHHHHHHHhhhcccccccccceeeeecc-
Q 016431 2 VGAIASGQIAE----YIGR-KGSLMIAAVPNIIGWLIISFSKD------SSFLFMGRLLEGFGVGVISYTVPVYIAEIA- 69 (389)
Q Consensus 2 ig~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~- 69 (389)
+..|+.|.++| |+|| |+.++.+....+++..++-..++ +..+++...+.+++.....+...++..|..
T Consensus 57 i~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~ 136 (473)
T PRK10429 57 INDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTL 136 (473)
T ss_pred HhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCC
Confidence 45788999999 6698 55666788888887666654332 234555666778888888888889999998
Q ss_pred CcccccchhhhhHHHHHHHHHHHHHhccc----c-------chHHHHHhhhHHHHHHH-HHHhcccCCchhhHhcCChhH
Q 016431 70 PQNMRGSLGSVNQLSVTIGIMLAYLLGLF----V-------NWRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTED 137 (389)
Q Consensus 70 ~~~~r~~~~~~~~~~~~lG~~l~~~i~~~----~-------~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~ 137 (389)
+++||.+..++-....++|..+.+.+... . +|+....+.++..++.. +..+..+|.++....
T Consensus 137 ~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~------ 210 (473)
T PRK10429 137 DKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQ------ 210 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccc------
Confidence 68899998888666666664444332211 1 46766666666555543 333446664310000
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCC
Q 016431 138 FESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGI 217 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (389)
+..++++.+.++.++.+++++.++..+....+.... ......+.+++.+....
T Consensus 211 -----------------------~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~----~~~~~~~~~y~~~y~~~ 263 (473)
T PRK10429 211 -----------------------VSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIA----SNIINGFAIYYFTYVIG 263 (473)
T ss_pred -----------------------ccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHhhheeeEEEEECC
Confidence 000001111223344455555444433333333222 22233333334333222
Q ss_pred CCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhh
Q 016431 218 SSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVT 295 (389)
Q Consensus 218 ~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (389)
+... .......+..+++.++.+++.||+|+|+.+..+..+..++.+.+........ .......+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~l 333 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAP----------HNALLIVIAGIL 333 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc----------hhHHHHHHHHHH
Confidence 2222 3333445778889999999999999999988777665555444322111100 001111111121
Q ss_pred eeeeeecccccchhhhhccccc-------cchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 296 VVISFSLGVGAIPWVIMSEILP-------VNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
...+.+ ...+..+++.+|..+ .+..|..+|.......++..+++.+.|.+.+
T Consensus 334 ~g~~~~-~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 334 LNIGTA-LFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 223455678888855 3334668899999999999999999999887
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=145.88 Aligned_cols=265 Identities=12% Similarity=0.042 Sum_probs=169.6
Q ss_pred hccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc----------------
Q 016431 36 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---------------- 99 (389)
Q Consensus 36 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~---------------- 99 (389)
...+++.+++.-++.|.|.+...+..+.++++..|+|++.+.+++.+..+++|.+++|.+++.+
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 4578999999999999999999999999999999999999999999999999999999999843
Q ss_pred ----chHHHHHhhhHHHHHHHHHHhc--ccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccch
Q 016431 100 ----NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR 173 (389)
Q Consensus 100 ----~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (389)
+||++|++.+...++..+.+.+ +||.++ ++++ + .+.++. ..
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~--------------------~----~~~~~~---~~ 132 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA--------------------R----VSSGDT---TQ 132 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc--------------------c----cccccc---cc
Confidence 4889998666554444334333 344311 0000 0 000000 01
Q ss_pred HHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh---cCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchh
Q 016431 174 FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN---AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR 248 (389)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~ 248 (389)
.+..++++..... .+..+...........|.+.++.+ .+.++.+ ........+.++|+++.+++.||+++|
T Consensus 133 ~~~~~~~~~~~l~----~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~ 208 (310)
T TIGR01272 133 KTSAFQFTHLVLG----ALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG 208 (310)
T ss_pred hhhHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 1123333332222 222222222344556677777754 3665544 556666788899999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHH
Q 016431 249 LLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA 328 (389)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 328 (389)
+.+..+..+..++..+.... .. . .........+ .+.....|...+...+..|++ .+++.++.
T Consensus 209 ~~l~~~~~l~~~~~~l~~~~---~~----------~---~~~~~~~l~g-~~~s~i~P~~~s~a~~~~~~~-~~~asai~ 270 (310)
T TIGR01272 209 RYLAFNAFLAVLLSIGAALT---HG----------Y---VAMWFVLALG-LFNSIMFPTIFSLALNALGRH-TSQGSGIL 270 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHc---CC----------H---HHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhh-hhhhHHHH
Confidence 88877766666554333211 00 0 1111111222 222344566667777777754 45666665
Q ss_pred HHHHHHHHHHHHHHhHHHhh-hccchhhH
Q 016431 329 TLANWLVSWIVTMTANFLLD-WSSGGTFL 356 (389)
Q Consensus 329 ~~~~~~g~~~~~~~~g~l~~-~~~~~~~~ 356 (389)
....+|+++.|.+.|.+.| .+....++
T Consensus 271 -~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 271 -CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred -HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 5678999999999999988 55444444
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-17 Score=130.94 Aligned_cols=307 Identities=16% Similarity=0.102 Sum_probs=172.4
Q ss_pred hhhchHHHHhh-hhhhhHHHHhhHHHHHHHHHHH---hccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchh
Q 016431 3 GAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIIS---FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLG 78 (389)
Q Consensus 3 g~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 78 (389)
-++++|++.|| +|-|..-++-+....++.++++ ..+.+|.+..+||+.|+|.....++.+.+..-|+..||.+.++
T Consensus 95 lcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vf 174 (459)
T KOG4686|consen 95 LCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVF 174 (459)
T ss_pred EeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchh
Confidence 35788999996 7877766655555566666665 3688999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcccc-chHHHHHhhhHHHHHHHHHHhcc---cCCchhhHhcCC-hhHHHHHHHHHhcCCcchh
Q 016431 79 SVNQLSVTIGIMLAYLLGLFV-NWRVLAVLGVLPCTLLIPGLFFI---PESPRWLAKMGM-TEDFESSLQVLRGFDTDIS 153 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~-~wr~~f~~~~~~~~~~~~~~~~~---~e~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 153 (389)
|+.....-+|..+--.+..++ +.-.-++-...-..+.+.+.+-. ..+-.-....+- ++.+++.+.+
T Consensus 175 GlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~--------- 245 (459)
T KOG4686|consen 175 GLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHL--------- 245 (459)
T ss_pred hHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh---------
Confidence 999988888876544333333 11111110111111111110000 000000000000 0011111110
Q ss_pred HHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hcCCCCcc--HHHHHHHHH
Q 016431 154 IEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVV 230 (389)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~ 230 (389)
++....+.++-.-..-++ +.++.....+.+.... ...+....|.+++ +.|+++.. .........
T Consensus 246 --------e~g~~Ge~pkLtdv~~f~-ppfw~~~iicv~yyva----~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~I 312 (459)
T KOG4686|consen 246 --------EEGFLGEEPKLTDVNTFY-PPFWVLVIICVLYYVA----WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGI 312 (459)
T ss_pred --------hcCcccCCcccccccccC-ccHHHHHHHHHHHHHH----HHHHhhhhHHHHHHhhCCChhhccchhhhhhhh
Confidence 000000011111011112 2333333333333222 2233334455554 46887655 444445566
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHhHHHHHHH-HHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchh
Q 016431 231 QVVATGVNTWLMDKAGRRLLLLISSSGMAASF-FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 309 (389)
Q Consensus 231 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (389)
..+.+++.|.++||+|++...+.+..+..+.. ..+.+.. ++++..+.. .+..+. ......|
T Consensus 313 sav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~--------------lsPy~~m~~---lGLsys-llAcslW 374 (459)
T KOG4686|consen 313 SAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF--------------LSPYTSMTF---LGLSYS-LLACSLW 374 (459)
T ss_pred hhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh--------------ccHHHHHHH---HhhhHH-HHHHHHh
Confidence 77889999999999999877666554443322 2222210 122222211 111111 1123346
Q ss_pred hhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 310 VIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
..++.+.|+++.|++.|.++..+++|-++.|.+.|.+.|.
T Consensus 375 P~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 375 PCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred hhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence 7778889999999999999999999999999999999983
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-17 Score=146.83 Aligned_cols=295 Identities=14% Similarity=0.092 Sum_probs=171.4
Q ss_pred chhhchHHHHhh----hhhhhHH-HHhhHHHHHHHHHHHhccc------hhHHHHHHHHhhhcccccccccceeeeeccC
Q 016431 2 VGAIASGQIAEY----IGRKGSL-MIAAVPNIIGWLIISFSKD------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAP 70 (389)
Q Consensus 2 ig~~~~g~l~dr----~Grr~~l-~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~ 70 (389)
+..|+.|.++|| +||||.. +++.+..+++..++-..|+ ...+.+.-.+..++.......-.++..|..+
T Consensus 60 i~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~ 139 (460)
T PRK11462 60 ISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITN 139 (460)
T ss_pred HHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcC
Confidence 456889999995 7987654 4677788887777655553 3345556666788888888888889999886
Q ss_pred -cccccchhhhhHHHHHHHHHHHHHhcccc-----------chHHHHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhH
Q 016431 71 -QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTED 137 (389)
Q Consensus 71 -~~~r~~~~~~~~~~~~lG~~l~~~i~~~~-----------~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~ 137 (389)
++||++..++...+..+|..+++.+...+ +|+....+.+++.++.... ....+|.++.
T Consensus 140 d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~--------- 210 (460)
T PRK11462 140 DPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA--------- 210 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC---------
Confidence 78999999999999888877665553221 4676666666655554333 3334543210
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCC
Q 016431 138 FESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGI 217 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (389)
+.++.+.++..+..++++.++.......+.............++..+.. +.
T Consensus 211 --------------------------~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~---g~ 261 (460)
T PRK11462 211 --------------------------PPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWIL---GT 261 (460)
T ss_pred --------------------------CccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhc---CC
Confidence 0001112234455666666655544333333322222223333333332 22
Q ss_pred CCcc-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhhe
Q 016431 218 SSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTV 296 (389)
Q Consensus 218 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (389)
.+.. .......+..+++.++++++.||+++|+....+..+..+...++.+ ... ...........+.
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~---~~~----------~~~~~~~~~~~l~ 328 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF---VPM----------QASITMFVFIFVI 328 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---hch----------hHHHHHHHHHHHH
Confidence 1111 3344556778889999999999999988766544433332222211 100 0000111111111
Q ss_pred eeeeecccccchhhhhccccc-------cchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 297 VISFSLGVGAIPWVIMSEILP-------VNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
..+ .....+..+++.+|..+ .+..|..++.......+|.++++.+.|.+.+
T Consensus 329 g~~-~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 329 GVL-HQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHH-HHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12234455667777665 3333555677778999999999999998887
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-18 Score=154.61 Aligned_cols=318 Identities=11% Similarity=-0.010 Sum_probs=183.3
Q ss_pred hhchHHHHhhhh-----hhhHHHHhhHHHH-HHHHHHHhccchhHHH-HHHHHhhhcccccccccceeeeeccCcccccc
Q 016431 4 AIASGQIAEYIG-----RKGSLMIAAVPNI-IGWLIISFSKDSSFLF-MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS 76 (389)
Q Consensus 4 ~~~~g~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 76 (389)
.+++|+++||++ ||+.++++.++.+ +.....+..++..... +..++.+++.+...++..++..|..+ +++..
T Consensus 77 K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~ 155 (468)
T TIGR00788 77 KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA 155 (468)
T ss_pred HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc
Confidence 356999999998 7777788777763 4433344345544444 48899999999999999999999998 55544
Q ss_pred hhhhhHH---HHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCC
Q 016431 77 LGSVNQL---SVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD 149 (389)
Q Consensus 77 ~~~~~~~---~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 149 (389)
..+.... ..++|.++++.+++.+ +||..|++.+...++..+...+++|++.....+.+.++.. .
T Consensus 156 ~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~---------~ 226 (468)
T TIGR00788 156 GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM---------N 226 (468)
T ss_pred CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchh---------h
Confidence 4333333 3347888888888776 8999999988877777666677888641100000000000 0
Q ss_pred cchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHH
Q 016431 150 TDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGL 227 (389)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 227 (389)
. .. ..... ....++........++++..+..+...++.+..... . ....+. ...+..|.++.. ......
T Consensus 227 -~--~~-~~~~~--~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~-~-~~~~f~-~~~~~lG~s~~~~G~~~~~~ 297 (468)
T TIGR00788 227 -M--AL-LTLGV--LANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPG-A-SGSVFC-ATTQCLPGGPSFSGMSKVVG 297 (468)
T ss_pred -h--hh-hhhhH--HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCC-C-CceeEE-EEcccCCCCcchhhhHHHHH
Confidence 0 00 00000 000000111222334444333322222221111111 1 111111 111245666655 555667
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhccc-c-cCCccchhHHHHHHHHHhhheeeeeecccc
Q 016431 228 GVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGF-V-SEDSRFYSILGILSLVGLVTVVISFSLGVG 305 (389)
Q Consensus 228 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (389)
+++.+++....+++.+|++.|+.+..+.++..++...........+. . .++. ........+...+++....
T Consensus 298 ~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~-------~~~~~~~~l~~~~~g~~~~ 370 (468)
T TIGR00788 298 NLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDE-------VFVLGDSIIAEVLAQLKFM 370 (468)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCe-------eeeeehhHHHHHHHHHHHc
Confidence 78999999999999999999999888877777665443211100000 0 0000 0000111111112233334
Q ss_pred cchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 306 AIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
|. ..++++..|++.+++.+++.+...++|..+++.+++.+.+
T Consensus 371 ~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 371 PF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred cH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4889999999999999999999999999999999999888
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=143.99 Aligned_cols=326 Identities=15% Similarity=0.126 Sum_probs=185.2
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHH--HHHHH-HHHhc----cchh-HHHHHHHHhhhcccccccccceeeeeccCccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPN--IIGWL-IISFS----KDSS-FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 73 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~--~~~~~-~~~~~----~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 73 (389)
+.+|+.|.++||+|.||-++...... ..+.+ ...+. .|.+ ..+++-...|+......|+.-+++.++. ++
T Consensus 58 ~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~ 135 (412)
T PF01306_consen 58 LAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RR 135 (412)
T ss_dssp HTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HH
T ss_pred HHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HH
Confidence 56889999999999777655433222 22222 22222 2332 2333334445545555555555544443 23
Q ss_pred ccchhhhhHHHHHHHHHHHHHhcccc---chHHHHHhhhHHHHHHHHHHhc-ccCCchhhHhcCChhHHHHHHHHHhcCC
Q 016431 74 RGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFD 149 (389)
Q Consensus 74 r~~~~~~~~~~~~lG~~l~~~i~~~~---~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 149 (389)
.+.-.|-.-+..++|.+++..++|.+ +-+..||+....+++..++.+. -|+.++.....+
T Consensus 136 ~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~---------------- 199 (412)
T PF01306_consen 136 NGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD---------------- 199 (412)
T ss_dssp HSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST----------------
T ss_pred hcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc----------------
Confidence 35556667778888888888888877 5677888777666655444443 334332110000
Q ss_pred cchhHHHHHHHHHhhhcccccc---chHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCC----cc-
Q 016431 150 TDISIEVNEIKRSVASSSRRTA---IRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISS----SN- 221 (389)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~- 221 (389)
..+.++++ ....+++|.++++.+.+....... .+...-...+.++...--+. ..
T Consensus 200 --------------~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~----~Y~vfdqqf~~y~~~~f~~~~~g~~~~ 261 (412)
T PF01306_consen 200 --------------ALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAA----IYDVFDQQFPIYFASFFQSAGQGNQMY 261 (412)
T ss_dssp --------------TSSS------HHHHHHHTTSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred --------------ccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccccChhHH
Confidence 00011111 223455555554443332222221 13344333444444322221 11
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeee
Q 016431 222 -VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300 (389)
Q Consensus 222 -~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (389)
.......+.+++...+.+++.+|+|.|+.++++..++.+=....++. ..++.....-.+-..-+
T Consensus 262 G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~---------------~~~~~i~~~klLH~~e~ 326 (412)
T PF01306_consen 262 GYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA---------------TNPWVISLIKLLHALEF 326 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-----------------SHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh---------------cchHHHHHHHHHHHHHH
Confidence 44445567888999999999999999999999988888877766642 11111111111111111
Q ss_pred ecccccchhhhhccccccchhhhhhhHH-HHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCCC
Q 016431 301 SLGVGAIPWVIMSEILPVNIKSLAGSVA-TLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKG 378 (389)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
..... ...-|+++.+|++..++...+. +...+++..+.+.+.|.+.| .|....+++.+.+.....++..+.++++++
T Consensus 327 ~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 327 PLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 11111 2237899999999999999886 78889999999999999999 666778888888877777788887776655
Q ss_pred C
Q 016431 379 R 379 (389)
Q Consensus 379 ~ 379 (389)
.
T Consensus 406 ~ 406 (412)
T PF01306_consen 406 Q 406 (412)
T ss_dssp T
T ss_pred c
Confidence 4
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=135.28 Aligned_cols=326 Identities=15% Similarity=0.190 Sum_probs=203.0
Q ss_pred hhchHHHHhhhhhhhHHH-HhhHHHHHHHHHHHhccc--hh-HHHHHHHHhhhcccccccccceeeeeccCcccccchhh
Q 016431 4 AIASGQIAEYIGRKGSLM-IAAVPNIIGWLIISFSKD--SS-FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 79 (389)
Q Consensus 4 ~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~--~~-~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 79 (389)
+|+.|.++|+.|+||... ....+..++.....++++ ++ ..++.-.+..++.....+...+++.+..++++-++..+
T Consensus 75 apiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~ 154 (438)
T COG2270 75 APILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISG 154 (438)
T ss_pred HHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccc
Confidence 678899999999666544 555555666666666655 44 45556788888998999999999999999988888877
Q ss_pred hhHHHHHHHHHHHHHhccc----------------------cchHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChh
Q 016431 80 VNQLSVTIGIMLAYLLGLF----------------------VNWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTE 136 (389)
Q Consensus 80 ~~~~~~~lG~~l~~~i~~~----------------------~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~ 136 (389)
+-.....+|..+.-+.... .+=|..+.+.++-.++. +..++..+|.++- +.+..
T Consensus 155 lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~---~~~~~ 231 (438)
T COG2270 155 LGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKI---SSPPP 231 (438)
T ss_pred cccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccc---cccch
Confidence 7666666665544333210 03566666665544443 4455556655420 00000
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHh-hc
Q 016431 137 DFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NA 215 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 215 (389)
+ ...+.-++-..+.++.++++....++++. +...-+.+.+..+...+-. +.
T Consensus 232 ~------------------------~l~~g~k~L~~t~k~i~~~~~i~~FLiA~----~~~~DGv~til~~~~~fg~~~~ 283 (438)
T COG2270 232 T------------------------ALRNGFKELKSTFKEIRGRKNLVLFLIAR----FFYIDGVNTILAMGGVFGAADL 283 (438)
T ss_pred H------------------------HHHHHHHHHHHHHHHHhcccchHHHHHHH----HHHHhhHHHHHHHHHHHHHHHc
Confidence 0 00011112234455666655444433333 3333345566666666555 67
Q ss_pred CCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHh
Q 016431 216 GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGL 293 (389)
Q Consensus 216 ~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (389)
|.++.+ .......+.+++++++.|++.||+|.|+++..+.++..+..+....... . ......
T Consensus 284 gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~---------------~-~~f~i~ 347 (438)
T COG2270 284 GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG---------------E-LDFWIL 347 (438)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc---------------c-HHHHHH
Confidence 887777 4555568999999999999999999998888877766665544332100 0 111111
Q ss_pred hheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhh
Q 016431 294 VTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLW 372 (389)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 372 (389)
.+..+.+..+.....-++..+.+|+++-+..+|+++..+...+.++|...+.+.+ .+....-....++....+++....
T Consensus 348 gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 348 GLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred HHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence 1111222334556677999999999999999999999999999999999999998 333333333333334444444445
Q ss_pred cccC
Q 016431 373 VPET 376 (389)
Q Consensus 373 ~~~~ 376 (389)
.|..
T Consensus 428 v~~~ 431 (438)
T COG2270 428 VKVP 431 (438)
T ss_pred ecCC
Confidence 5544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.8e-17 Score=140.13 Aligned_cols=299 Identities=17% Similarity=0.144 Sum_probs=192.0
Q ss_pred chhhchHHHHhh----hhhhh-HHHHhhHHHHHHHHHHHhccc------hhHHHHHHHHhhhcccccccccceeeeeccC
Q 016431 2 VGAIASGQIAEY----IGRKG-SLMIAAVPNIIGWLIISFSKD------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAP 70 (389)
Q Consensus 2 ig~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~ 70 (389)
+..|+.|.+.|| +||+| .++.+.+..++.+.++-.+++ ....++.-.+.+++.......-.++..|.++
T Consensus 63 i~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~ 142 (467)
T COG2211 63 ITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQ 142 (467)
T ss_pred HhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcC
Confidence 346788999994 78755 566688999999999888874 3456667788899999988888999999884
Q ss_pred -cccccchhhhhHHHHHHHHHHHHHhcccc-----------chHHHHHhhhHHHHHHHHHH-hcccCCchhhHhcCChhH
Q 016431 71 -QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLGVLPCTLLIPGL-FFIPESPRWLAKMGMTED 137 (389)
Q Consensus 71 -~~~r~~~~~~~~~~~~lG~~l~~~i~~~~-----------~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~ 137 (389)
++||.+..++-+.+.++|..+...+...+ ||+..-.+.++++.+..+.. +-.+|.+.. +
T Consensus 143 d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~---~----- 214 (467)
T COG2211 143 DPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVE---T----- 214 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCc---c-----
Confidence 68999999999999998866543333222 67777777777766664444 346665320 0
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cC
Q 016431 138 FESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AG 216 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (389)
+..++..+.+.+.....+++++.++.......+.... .+.......++.+. .|
T Consensus 215 ----------------------~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~----~~i~~s~~~yy~~y~lg 268 (467)
T COG2211 215 ----------------------QPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIA----FNIRGSIMVYYVTYVLG 268 (467)
T ss_pred ----------------------ccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHH----HHHHhhhhheeEEEEcC
Confidence 0000001122223344566777766555533333332 22222222332221 23
Q ss_pred CCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhh
Q 016431 217 ISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLV 294 (389)
Q Consensus 217 ~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (389)
.++.. ..........+++.++..++.+|+|+|+....+.++..++..++.+.. . ......++..+
T Consensus 269 ~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~--~-----------~~~~l~~~~~~ 335 (467)
T COG2211 269 DPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP--A-----------GSVVLIVVALI 335 (467)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc--C-----------cchHHHHHHHH
Confidence 32222 334444566667799999999999999999999888888877776532 0 01111122212
Q ss_pred heeeeeecccccchhhhhccccc-------cchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 295 TVVISFSLGVGAIPWVIMSEILP-------VNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
+ .........++.+++.+|..+ .+.-|...|....+..+|.+++..+.|+..+
T Consensus 336 i-~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 336 I-AGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred H-HHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 122233446778888888754 3344788999999999999999999999887
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.1e-17 Score=146.01 Aligned_cols=294 Identities=13% Similarity=0.139 Sum_probs=163.1
Q ss_pred chhhchHHHHhhh----hhhhHH-HHhhHHHHHHHHHHHhcc-----c--hhHHHHHHHHhhhcccccccccceeeeecc
Q 016431 2 VGAIASGQIAEYI----GRKGSL-MIAAVPNIIGWLIISFSK-----D--SSFLFMGRLLEGFGVGVISYTVPVYIAEIA 69 (389)
Q Consensus 2 ig~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~~~~~-----~--~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 69 (389)
+..++.|+++||. ||||.. ..+.+...+..++....+ + ...+++...+.+++.+...+...++..|..
T Consensus 59 ~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 138 (448)
T PRK09848 59 FADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMT 138 (448)
T ss_pred HhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhc
Confidence 4678999999986 777755 556555554444432111 1 223444556778888888877777777766
Q ss_pred C-cccccchhhhhHHH-----HHHHHHHHHHhcccc------chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChh
Q 016431 70 P-QNMRGSLGSVNQLS-----VTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTE 136 (389)
Q Consensus 70 ~-~~~r~~~~~~~~~~-----~~lG~~l~~~i~~~~------~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~ 136 (389)
+ ++||.+..+.-..+ ..++..++|.++... +|.....+.++.+++. ++.....||+++.
T Consensus 139 ~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~-------- 210 (448)
T PRK09848 139 QQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR-------- 210 (448)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC--------
Confidence 4 46788776655543 234555666665443 1211112222222222 2222334554210
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-c
Q 016431 137 DFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-A 215 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 215 (389)
+.++...+..++++++++.+........+.... ........+++.++ .
T Consensus 211 ---------------------------~~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 259 (448)
T PRK09848 211 ---------------------------IVAQPSLKISLQTLKRNRPLFMLCIGALCVLIS----TFAVSASSLFYVRYVL 259 (448)
T ss_pred ---------------------------CccCCCHHHHHHHHhCCchHHHHHHHHHHHHHH----HHHHhhhheeeEeeec
Confidence 000111223456677777665544444433332 22333344444443 3
Q ss_pred CCCCccH-H-HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHh
Q 016431 216 GISSSNV-A-TFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGL 293 (389)
Q Consensus 216 ~~~~~~~-~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (389)
+.++... . .....+..+++.++.+++.||+++|+.+..+..+..++.+.+.+. . +. ..+......
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~---~-----~~-----~~~~~~~~~ 326 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV---S-----VW-----SLPVALVAL 326 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---C-----ch-----hHHHHHHHH
Confidence 4332221 2 222245677889999999999999999988887777766554421 0 00 011111212
Q ss_pred hheeeeeecccccchhhhhccccccc-------hhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 294 VTVVISFSLGVGAIPWVIMSEILPVN-------IKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
.+...+. ....+..+++.+|..|.+ .+|..+|+.+....+|..+++.+.+.+.+
T Consensus 327 ~l~g~G~-~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 327 AIASIGQ-GVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 222345567777777654 45888999999999999999999998876
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=132.58 Aligned_cols=365 Identities=15% Similarity=0.137 Sum_probs=217.7
Q ss_pred hhhchHHHHhhh-hhhhHHHHhhHHHHHHHHHHHhcc--chhHHHHHHHHhhhcccccccccceeeeeccCcc--cccch
Q 016431 3 GAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN--MRGSL 77 (389)
Q Consensus 3 g~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~ 77 (389)
..+++|+++||+ |+|+++..|.++..+|.++.+.+. +...++++-.+.++|.|..-+...+++.|.+|++ +|-..
T Consensus 77 t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~g 156 (498)
T COG3104 77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG 156 (498)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCC
Confidence 357899999995 999999999999999999999984 7889999999999999999999999999999865 46778
Q ss_pred hhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCC---------chhhHhcCChhHHHHHHHH
Q 016431 78 GSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPES---------PRWLAKMGMTEDFESSLQV 144 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~---------p~~~~~~~~~~~~~~~~~~ 144 (389)
+++++++.++|.+++|++.+++ +|+..|...++-..+.++.....+.. |..+..+............
T Consensus 157 Ft~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (498)
T COG3104 157 FTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVM 236 (498)
T ss_pred ccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHH
Confidence 9999999999999999999988 89999999888776665555443321 1111111111111111100
Q ss_pred HhcCC---cchhHHHHHHH------HHh---hhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHH
Q 016431 145 LRGFD---TDISIEVNEIK------RSV---ASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF 212 (389)
Q Consensus 145 ~~~~~---~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (389)
..... ....+...... ... .+....++.. .+..|-....++++...+++.......+.+..|.....
T Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v 315 (498)
T COG3104 237 ILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNV 315 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 00000 00000000000 000 0000001100 11111112223444445555555555566666666554
Q ss_pred hhc--CCC-CccHHHHHHHHHHHHHHHHHHHHHhhhchh-------HHHHHHhHHHHHHHHHHHHHHhhcccccCCccch
Q 016431 213 ANA--GIS-SSNVATFGLGVVQVVATGVNTWLMDKAGRR-------LLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFY 282 (389)
Q Consensus 213 ~~~--~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (389)
++. |++ +.........+.-++.+++..++..|.+++ .-.-.+..++..+++++..........+.+.
T Consensus 316 ~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~--- 392 (498)
T COG3104 316 NRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLV--- 392 (498)
T ss_pred cccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---
Confidence 432 232 222556666677777777777777764433 2344555556666555554411111101111
Q ss_pred hHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHH-------Hhhhccchhh
Q 016431 283 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANF-------LLDWSSGGTF 355 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~-------l~~~~~~~~~ 355 (389)
+...++....+.........|+..+++..+.|+...+..++........+..++..+.+. .........|
T Consensus 393 ---s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F 469 (498)
T COG3104 393 ---SVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVF 469 (498)
T ss_pred ---CHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhH
Confidence 111122222222333566678888999999999999999999988888888888888773 2223344556
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 016431 356 LIYGIVCAFTVAFVSLWVP 374 (389)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~ 374 (389)
..++.+..+.........|
T Consensus 470 ~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 470 GTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 6666666666555554443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-15 Score=124.69 Aligned_cols=329 Identities=15% Similarity=0.101 Sum_probs=204.6
Q ss_pred hhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc------chh--HHHHHHHHhhhcccccccccceeeeeccCccccc
Q 016431 4 AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK------DSS--FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRG 75 (389)
Q Consensus 4 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~------~~~--~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 75 (389)
.+++-|+.|++|-|...+++..+..+++.+-..+. .++ ....+..+.+.++-.....-.....-|++++||.
T Consensus 96 gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra 175 (480)
T KOG2563|consen 96 GFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA 175 (480)
T ss_pred hhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh
Confidence 46678999999999999999999999999888763 344 6667888888888777777677778899999999
Q ss_pred chhhhhHHHHHHHHHHHHHhcccc----------chHH--HHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhHHHHHH
Q 016431 76 SLGSVNQLSVTIGIMLAYLLGLFV----------NWRV--LAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSL 142 (389)
Q Consensus 76 ~~~~~~~~~~~lG~~l~~~i~~~~----------~wr~--~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~ 142 (389)
.+..+-..+..+|.+++.++...+ .|.. .|+.....+.+.+.+ .+..+|.|+...+..
T Consensus 176 ~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s--------- 246 (480)
T KOG2563|consen 176 IATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSAS--------- 246 (480)
T ss_pred hhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchh---------
Confidence 999999999899999988888777 3554 344333333333222 223333332100000
Q ss_pred HHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCC--Cc
Q 016431 143 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGIS--SS 220 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 220 (389)
+ ....+.+...+.+..++++.+....+........ ++.+...+...+...+++ ..
T Consensus 247 ---------------~----~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~----F~~l~~~l~~~l~~sgY~~~~a 303 (480)
T KOG2563|consen 247 ---------------Q----AALQDASFPKSIKSCFKNRQFIILAICYGIGLGL----FNSLSTLLNLALCPSGYEGVFA 303 (480)
T ss_pred ---------------H----hhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHH----HHHHHHHhhhccccccCCcccc
Confidence 0 0000122455667778777766555555444443 334433333333344555 33
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhchhH-HHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeee
Q 016431 221 NVATFGLGVVQVVATGVNTWLMDKAGRRL-LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVIS 299 (389)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (389)
........+.+++++.+.|.+.||.+.-+ ..........++.+.+... .... .+ ...+.......+.
T Consensus 304 G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~-t~~~---~~--------~viv~~t~~~~g~ 371 (480)
T KOG2563|consen 304 GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTC-TLFL---GD--------SVIVFTTCGLLGF 371 (480)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hccC---Cc--------eEehhhhHHHHHH
Confidence 36777778899999999999999987644 4444443333332111111 1110 00 1112222222334
Q ss_pred eecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hc---cchhhHHHHHHHHHHHHHHHhhccc
Q 016431 300 FSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS---SGGTFLIYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
++.+..|+..-+..|..-|..-++..|+.+..+++-+.+-..+.+...+ .+ +..+..+......+.......+.++
T Consensus 372 ~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~ 451 (480)
T KOG2563|consen 372 FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP 451 (480)
T ss_pred hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence 4567778888888888777778899999999999999999999998877 33 2333344444434333333333443
Q ss_pred C
Q 016431 376 T 376 (389)
Q Consensus 376 ~ 376 (389)
.
T Consensus 452 ~ 452 (480)
T KOG2563|consen 452 D 452 (480)
T ss_pred h
Confidence 3
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-13 Score=118.11 Aligned_cols=300 Identities=15% Similarity=0.075 Sum_probs=189.1
Q ss_pred hhchHHHHhhhh-----hhhHHHH-hhHHHHHHHHHHHhc-----c-------chh----HHHHHHHHhhhccccccccc
Q 016431 4 AIASGQIAEYIG-----RKGSLMI-AAVPNIIGWLIISFS-----K-------DSS----FLFMGRLLEGFGVGVISYTV 61 (389)
Q Consensus 4 ~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~-------~~~----~~~~~r~l~G~~~~~~~~~~ 61 (389)
.+.+|+.+|+.+ ||..+++ |..+...+..+..++ . +.+ ...+.-.+.|+|.+......
T Consensus 31 R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~ 110 (403)
T PF03209_consen 31 RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSF 110 (403)
T ss_pred HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHH
Confidence 467899999998 8876665 666666555555443 2 222 34446678899999999999
Q ss_pred ceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc-----chHHHHHhhh--HHHHHHHHHHhcccCCchhhHhcCC
Q 016431 62 PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGV--LPCTLLIPGLFFIPESPRWLAKMGM 134 (389)
Q Consensus 62 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~--~~~~~~~~~~~~~~e~p~~~~~~~~ 134 (389)
.+++.|..|+|+|+++.++.....-+|.+++..+.+.+ .-|..-.+.. +..+...++..+-.|.+.....
T Consensus 111 lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~--- 187 (403)
T PF03209_consen 111 LALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRA--- 187 (403)
T ss_pred HHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccc---
Confidence 99999999999999999999999999999998888876 2232222222 2222222222233333210000
Q ss_pred hhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh
Q 016431 135 TEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN 214 (389)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (389)
+..++++......++++..++..+++....++.....+.-- ...-|+=-+-
T Consensus 188 --------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD---~iLEPygg~V 238 (403)
T PF03209_consen 188 --------------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQD---VILEPYGGEV 238 (403)
T ss_pred --------------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhH---HHcCCchhHH
Confidence 01122233344566777777777766655555444321100 1111222223
Q ss_pred cCCCCcc--HHHHHHHHHHHHHHHHHHHHHh-hhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHH
Q 016431 215 AGISSSN--VATFGLGVVQVVATGVNTWLMD-KAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLV 291 (389)
Q Consensus 215 ~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (389)
.|++..+ ......+.+.+++....+++.. |.++++....++....+++.++...-...+ .+..-.
T Consensus 239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~------------~~~~~~ 306 (403)
T PF03209_consen 239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGS------------PWLFRP 306 (403)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhccc------------chHHHH
Confidence 4666555 5556667888888888888777 577778877888888887777665433322 122223
Q ss_pred HhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 292 GLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
+..+++.+.+...... .+...+..++++.|..+|.....+.+...++..+.|.+.|
T Consensus 307 ~~~l~G~g~G~f~vga-ls~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 307 GVFLLGLGNGLFTVGA-LSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HHHHHHHhhhHHHHHH-HHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333222222 3677788888999999999999999999999999999988
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-15 Score=138.32 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=109.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHH---HHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI---ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLG 78 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 78 (389)
+++++.|+++||+|||+.+..+.++..+.... ...+++...++++|++.|++.+........++.|.+|++.|++++
T Consensus 301 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~ 380 (490)
T PRK10642 301 FVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSAL 380 (490)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHH
Confidence 46778999999999999998887654443332 223456777888999998877766667777888999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHHHhcccCCchhhHhc-----CChhHHHHHHHHHh
Q 016431 79 SVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKM-----GMTEDFESSLQVLR 146 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~-----~~~~~~~~~~~~~~ 146 (389)
+.......++..++|.+.+++ +|+.+++...+.+++..+..+++||+|+|+.++ ++.+|+++.+.+++
T Consensus 381 g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 381 AAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 974444445556777776665 578777776777777767777789999998765 88888888888776
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-15 Score=112.69 Aligned_cols=123 Identities=24% Similarity=0.398 Sum_probs=109.6
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|..|+++|++..++.
T Consensus 13 ~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T TIGR00880 13 IYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLM 92 (141)
T ss_pred HHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHH-hcccC
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL-FFIPE 124 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~-~~~~e 124 (389)
+....+|..+++.+++.+ +|++.+++.+...++..+.. ++.||
T Consensus 93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 93 SAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999988877 89999988877766664443 44454
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=127.31 Aligned_cols=125 Identities=24% Similarity=0.331 Sum_probs=100.3
Q ss_pred chhhchHHHHhhhhh-hhHHHHhhHHHHHHHHHH-Hhc---c-chhHHHHHHHHhhhcccccccccceeeeeccCccccc
Q 016431 2 VGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLII-SFS---K-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRG 75 (389)
Q Consensus 2 ig~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~-~~~---~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 75 (389)
++++..|+...|.++ |+.++.+.++..+++++. ++. + ..+.++++|++.|+|.+. .....+|+++....++|.
T Consensus 86 i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~ 164 (488)
T KOG2325|consen 86 IFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRP 164 (488)
T ss_pred hcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchH
Confidence 578899999999997 888999999999999988 443 3 567899999999998855 467889999999999999
Q ss_pred chhhhhHHHHHHHHHHHHHhcccc------c-----------hHHHHHhhhHHHHHHHH-HHhcccCCch
Q 016431 76 SLGSVNQLSVTIGIMLAYLLGLFV------N-----------WRVLAVLGVLPCTLLIP-GLFFIPESPR 127 (389)
Q Consensus 76 ~~~~~~~~~~~lG~~l~~~i~~~~------~-----------wr~~f~~~~~~~~~~~~-~~~~~~e~p~ 127 (389)
|+++....+..+|.++||.++..+ | +..+-|+.++..++.++ +.++++|.++
T Consensus 165 rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 165 RAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 999999999999999988887665 1 23566677777777644 4556777654
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.6e-14 Score=123.79 Aligned_cols=301 Identities=16% Similarity=0.163 Sum_probs=186.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhc--ccccccccceeeeeccCcccccchhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG--VGVISYTVPVYIAEIAPQNMRGSLGS 79 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~r~~~~~ 79 (389)
+.++..|.++||+|||..+........+..+...+.. |++.+ +.|+. .+.......++++|....++|....+
T Consensus 77 i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~g 151 (463)
T KOG2816|consen 77 ISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIG 151 (463)
T ss_pred HHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHH
Confidence 4678899999999999999999999988888887766 33333 44443 33556778899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhH
Q 016431 80 VNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISI 154 (389)
Q Consensus 80 ~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (389)
+....+..+..++|.+++.. |.-.+|.+..+..++. .....++||+-.. +.+.+ ...+....
T Consensus 152 ll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~---~~~~~~~~------- 218 (463)
T KOG2816|consen 152 LLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD---ATLRELTP------- 218 (463)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc---ccccccCC-------
Confidence 99999999999999999987 6677888888877776 4456678887421 00000 00000000
Q ss_pred HHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHH---HhhcChh-HHHHHHHHHHhhcCCCCcc--HHHHHHH
Q 016431 155 EVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL---QQLSGIN-GVLFYSSNIFANAGISSSN--VATFGLG 228 (389)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~ 228 (389)
.........+..+...+....+..+.......+ ....... ...+|. ....+.+..+ ......+
T Consensus 219 --------~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl---~~~f~w~~~~~s~~~~~~~ 287 (463)
T KOG2816|consen 219 --------GSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYL---KAKFGWNKKEFSDLLSLVS 287 (463)
T ss_pred --------CcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEE---eeecCcCHHHHHHHHHHHH
Confidence 000000111111112221111111211111111 1111001 111111 1123555444 3444456
Q ss_pred HHHHHHHHHHH-HHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccc
Q 016431 229 VVQVVATGVNT-WLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAI 307 (389)
Q Consensus 229 ~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (389)
....++..+.. .+...++.|+....+.....+.....++... .+....... ...+.....|.
T Consensus 288 ~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~---------------~w~~~~~~v--~~~~~~~~~pa 350 (463)
T KOG2816|consen 288 ILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE---------------TWMMFAAGV--VVALAGIVFPA 350 (463)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc---------------chhhhHHHH--HHHhhcchhHH
Confidence 66667766655 6777788888888888888888777775421 111111111 11223344566
Q ss_pred hhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 308 PWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
..+..+...+++++|.+.++......+...++|.+.+.+..
T Consensus 351 ~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 351 IRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred HHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 67888899999999999999999999999999999998865
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-14 Score=134.12 Aligned_cols=125 Identities=17% Similarity=0.069 Sum_probs=112.0
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+|+++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++.++...++++|++|.++|++++|+.
T Consensus 610 ~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~ 689 (742)
T TIGR01299 610 PGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFL 689 (742)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999998888888999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc---chHHHHHhhhHHHHHHHHHHhcccCCc
Q 016431 82 QLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFFIPESP 126 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~---~wr~~f~~~~~~~~~~~~~~~~~~e~p 126 (389)
++...+|.+++|.+++.+ +...+|++.++..++..++..++||+.
T Consensus 690 ~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 690 NALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999866 455778877777777766677789874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=114.44 Aligned_cols=160 Identities=15% Similarity=0.099 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHH-hhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccC
Q 016431 201 INGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 277 (389)
Q Consensus 201 ~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (389)
......+.+.++ ++.|.+..+ .......+..+++.+..|+++||+|||+.+..+.....++...+.+..
T Consensus 23 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~-------- 94 (395)
T PRK10054 23 RGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN-------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh--------
Confidence 344444555444 457887666 555555678889999999999999999998888877776665554321
Q ss_pred CccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHH
Q 016431 278 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLI 357 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~ 357 (389)
............... .....+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.+.++...+..
T Consensus 95 -------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~ 166 (395)
T PRK10054 95 -------NVTLVVLFFALINCA-YSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWL 166 (395)
T ss_pred -------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHH
Confidence 111111111111111 122345566888999999999999999999999999999999999887666667776
Q ss_pred HHHHHHHHHHHHHhhcccC
Q 016431 358 YGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~ 376 (389)
.+++..+..++..+..++.
T Consensus 167 ~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 167 AAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 6665555444444444443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-14 Score=132.67 Aligned_cols=338 Identities=17% Similarity=0.089 Sum_probs=3.0
Q ss_pred hhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc--------------------------------------------
Q 016431 3 GAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-------------------------------------------- 38 (389)
Q Consensus 3 g~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------------------------------- 38 (389)
..++..+..+|-.|-|.+-.|.++.+++++++++-+
T Consensus 54 ~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 133 (539)
T PF03137_consen 54 VVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSS 133 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccc
Confidence 445667778887778888899999999999887621
Q ss_pred ------chhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc-------------
Q 016431 39 ------DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------- 99 (389)
Q Consensus 39 ------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~------------- 99 (389)
-+..++++.++.|+|....++...+|+-|..++++-+..+|+..+...+|.++|.++++..
T Consensus 134 ~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 134 SSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------------SSS-----------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 0236788999999999999999999999999999999999999999999999999998765
Q ss_pred ---------c----hHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhc
Q 016431 100 ---------N----WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASS 166 (389)
Q Consensus 100 ---------~----wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (389)
. |..-|++.+...++..+..+++|+.-+... +..++.+...++....+++ +.+.++..+.....
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 290 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTS--ERQEEKESSERKEEDSDKD-SFKDPKSKKSFGKS 290 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcc--cccchhhhhhcchhhhhhh-cccccccccchhhh
Confidence 1 444455555555555444555554422110 0000000000000000000 00000000000111
Q ss_pred cccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc---HHHHHHHHHHHHHHHHHHHHH
Q 016431 167 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN---VATFGLGVVQVVATGVNTWLM 242 (389)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~g~l~ 242 (389)
.++.....+++++++.+ +...+...........+..+.|.+++. .+.++.. ........+.++|.+++|++.
T Consensus 291 ~~df~~~l~~Ll~Np~f----~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~iv 366 (539)
T PF03137_consen 291 IKDFPKALKRLLTNPVF----MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIV 366 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHhcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEE
Confidence 22334445566666543 334444444444566777888888874 5665544 222333456678899999999
Q ss_pred hhhc--hhHHHHHHhHHHHHHHHH----HHHHHhhcccc----cC-------C--c------------------c-chh-
Q 016431 243 DKAG--RRLLLLISSSGMAASFFL----VSVAFFLEGFV----SE-------D--S------------------R-FYS- 283 (389)
Q Consensus 243 d~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~-------~--~------------------~-~~~- 283 (389)
+|++ .|.......+...++.+. +.+.+...... +. . + . ...
T Consensus 367 kk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~ 446 (539)
T PF03137_consen 367 KKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSD 446 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcc
Confidence 9975 344444444433333332 11111111000 00 0 0 0 000
Q ss_pred --HHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHH-HHHHHHHHHhHHHhh
Q 016431 284 --ILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANW-LVSWIVTMTANFLLD 348 (389)
Q Consensus 284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~ 348 (389)
......++..++..........|.. ...-..+|+++|+.+.|+.....+ +|.+-+|.++|.+.|
T Consensus 447 C~~~~~~Fl~~~~~~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD 513 (539)
T PF03137_consen 447 CCNKLIPFLILLFILSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIID 513 (539)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccccHHHHHHHHHHHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence 0111222222222233333444544 555678999999999999976655 577889999999988
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.3e-12 Score=112.13 Aligned_cols=177 Identities=12% Similarity=0.051 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHH
Q 016431 185 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 262 (389)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 262 (389)
......++.+...+.....+....|.+.++.+.+..+ .......++..++.+..|++.||+|||+.+..+.++..++.
T Consensus 8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 87 (412)
T TIGR02332 8 RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS 87 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 3444444555555555566666777777788887666 55566678888999999999999999999988888888777
Q ss_pred HHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHH
Q 016431 263 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT 342 (389)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 342 (389)
.+..+.. +.......-.+.+.+ ..+..|....++.|.+|+++|+++.|+.+....+|..+++.+
T Consensus 88 ~~~~~~~---------------~~~~l~~~r~l~G~~-~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 88 TATMFAT---------------GPESLYLLRILVGIA-EAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred HHHHHhc---------------CHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766421 111112222222222 223345566788999999999999999999999999999999
Q ss_pred hHHHhh-------hccchhhHHHHHHHHHHHHHHHhhcccCC
Q 016431 343 ANFLLD-------WSSGGTFLIYGIVCAFTVAFVSLWVPETK 377 (389)
Q Consensus 343 ~g~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
.+++.+ .++...+.+.++..++...+.++++||++
T Consensus 152 ~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 152 SGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 998864 35556677666666665566666677654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.5e-12 Score=112.67 Aligned_cols=160 Identities=16% Similarity=0.110 Sum_probs=113.0
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
......+.|.+.++.|.+..+ .......++.+++.++.|++.||+|||+.+..+..+..++..+....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------- 102 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA---------- 102 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc----------
Confidence 445566778888888877655 45555678888999999999999999999988887777766655432
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 357 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~ 357 (389)
...........+...+. ....+...++..|.+|+++|+++.++.+....+|..++|.+.+.+.+ .++...+.+
T Consensus 103 -----~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 103 -----TNVTQLLILRFLAGLGL-GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred -----cchHHHHHHHHHHhccc-ccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 01112222222222222 23445667999999999999999999999999999999999999887 455555666
Q ss_pred HHHHHHHHHHHHHhhcccC
Q 016431 358 YGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~ 376 (389)
.+++..+...+.....|++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 177 GGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred hhhHHHHHHHHHHHhCCCC
Confidence 6555555555555556654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-12 Score=111.95 Aligned_cols=161 Identities=17% Similarity=0.054 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc
Q 016431 202 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 279 (389)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
.......|.+.++.|.++.+ .......++..++.++.|++.||+|||+.+..+..+..++.......
T Consensus 22 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------- 90 (385)
T TIGR00710 22 DMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS----------- 90 (385)
T ss_pred HHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 34444557777788887665 55566678889999999999999999999998888777776665532
Q ss_pred cchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHH
Q 016431 280 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIY 358 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~ 358 (389)
...........+...+ .....+....+..|.+|+++|++..+..+....+|..++|.+.+.+.+ .++...+.+.
T Consensus 91 ----~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 91 ----NNIETLLVLRFVQAFG-ASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred ----ccHHHHHHHHHHHHcc-hhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 0111222222222222 223345556889999999999999999999999999999999999887 4555566666
Q ss_pred HHHHHHHHHHHHhhcccCCC
Q 016431 359 GIVCAFTVAFVSLWVPETKG 378 (389)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~ 378 (389)
++...+.........||+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 166 SLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHhCCCCCC
Confidence 66655555555555665443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=110.26 Aligned_cols=156 Identities=16% Similarity=0.043 Sum_probs=109.9
Q ss_pred HHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccch
Q 016431 205 LFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFY 282 (389)
Q Consensus 205 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (389)
....|.+.++.|.++.+ .......++..++.+..|++.||+|||+.+..+..+..++.......
T Consensus 29 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------------- 94 (390)
T PRK03545 29 VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-------------- 94 (390)
T ss_pred HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 34467777888887766 44445567778888999999999999999999888888777666542
Q ss_pred hHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHH
Q 016431 283 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIV 361 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~ 361 (389)
.+.....+.....+.+ .....+...++..|.+|+++|++++|+......+|..++|.+.+.+.+ .++...+++.+++
T Consensus 95 -~~~~~l~~~r~~~G~~-~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~ 172 (390)
T PRK03545 95 -WNFTVLLISRIGIAFA-HAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGG 172 (390)
T ss_pred -ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHH
Confidence 1111222222211111 122345556888999999999999999999999999999999999887 4666677777766
Q ss_pred HHHHHHHHHhhcccC
Q 016431 362 CAFTVAFVSLWVPET 376 (389)
Q Consensus 362 ~~~~~~~~~~~~~~~ 376 (389)
..+.........|+.
T Consensus 173 ~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 173 ALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHhCCCC
Confidence 665555555555553
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=109.49 Aligned_cols=156 Identities=18% Similarity=0.132 Sum_probs=109.0
Q ss_pred HHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccch
Q 016431 205 LFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFY 282 (389)
Q Consensus 205 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (389)
....|.+.++.|.++.+ .......++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------------- 105 (394)
T PRK10213 40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-------------- 105 (394)
T ss_pred HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 33566777788887766 44456678888999999999999999999999998888876665532
Q ss_pred hHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHH
Q 016431 283 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIV 361 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~ 361 (389)
...........+.+.+. ....+....++.|.+|+++|+.+.++.....+++..++|.+.+.+.+ .++...+++.+++
T Consensus 106 -~~~~~l~~~r~l~G~~~-g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l 183 (394)
T PRK10213 106 -NSFSLLLIGRACLGLAL-GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVM 183 (394)
T ss_pred -ChHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 11112222222222222 22345666888999999999999999999999999999999999988 4555566665555
Q ss_pred HHHHHHHHHhhcccC
Q 016431 362 CAFTVAFVSLWVPET 376 (389)
Q Consensus 362 ~~~~~~~~~~~~~~~ 376 (389)
..+.........||+
T Consensus 184 ~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 184 GVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHCCCC
Confidence 444433333445554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=105.53 Aligned_cols=172 Identities=15% Similarity=0.087 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHH
Q 016431 187 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 264 (389)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 264 (389)
++...+..+......+...-.+|.+-++.+.+... .....+..+..++.++...+.||++||+.++....+..++.++
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l 94 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL 94 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 44444455554555667777889999999998777 6667788999999999999999999999999999999999888
Q ss_pred HHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhH
Q 016431 265 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTAN 344 (389)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g 344 (389)
..+.. +....+++-.+.... ...+.++..+...++.|+++|+++.++.+....++..+|.+++.
T Consensus 95 ~alAp---------------~f~~Ll~aR~~~g~a-~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt 158 (394)
T COG2814 95 SALAP---------------SFAVLLLARALAGLA-HGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158 (394)
T ss_pred HHHhc---------------cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH
Confidence 87642 122233333322222 22345666799999999999999999999999999999999999
Q ss_pred HHhh-hccchhhHHHHHHHHHHHHHHHhhcc
Q 016431 345 FLLD-WSSGGTFLIYGIVCAFTVAFVSLWVP 374 (389)
Q Consensus 345 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (389)
++-| .++..+|+..+.+..+..+..+..+|
T Consensus 159 ~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 159 FLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999 78888999999999888888888888
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=111.23 Aligned_cols=169 Identities=10% Similarity=-0.036 Sum_probs=114.7
Q ss_pred HHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHH
Q 016431 191 GLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 268 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (389)
.+..+..+........+.|.+.++.|.+..+ .......++..++.+..|++.||+|||+.+..+.++..++.++....
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 108 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS 108 (434)
T ss_pred HHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 3333333333345566778888888887666 55556678889999999999999999999988888888877766542
Q ss_pred HhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 269 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
. ..........+...+.+ ...+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+
T Consensus 109 ~---------------~~~~l~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 109 S---------------SLWAFALLWVLNAFFQG-WGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred h---------------HHHHHHHHHHHHHHHHH-ccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111111111111 2234555888999999999999999999999999999999999887
Q ss_pred -hccchhhHHHHHHHHHHHHHHHhhccc
Q 016431 349 -WSSGGTFLIYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 349 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
.++...+.+.+++..+..++..+..+|
T Consensus 173 ~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 173 HYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555556666665555444444444444
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-11 Score=108.27 Aligned_cols=175 Identities=13% Similarity=0.049 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHH
Q 016431 185 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 262 (389)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 262 (389)
+......+................+.+.++.+.++.+ .......++..++.++.|++.||+|||+.+..+..+..++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 91 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGT 91 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3344444444444444556666777777888887666 55566778899999999999999999999998887777776
Q ss_pred HHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHH
Q 016431 263 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT 342 (389)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 342 (389)
++..... ..........+.+.+ .....+...+++.|..|+++|+.+.++.+....+|..+++.+
T Consensus 92 ~~~~~~~---------------~~~~l~~~~~l~G~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 155 (405)
T TIGR00891 92 LACGFAP---------------GYITMFIARLVIGIG-MGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155 (405)
T ss_pred HHHHHhc---------------cHHHHHHHHHHHHhh-hhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6655320 111122222222222 223345556888999999999999999999999999999999
Q ss_pred hHHHhhh-c--cchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 343 ANFLLDW-S--SGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 343 ~g~l~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.+.+.+. + +...+. ..++..+...+.....||+
T Consensus 156 ~~~l~~~~~~~w~~~f~-~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 156 YSLVVPVWGDGWRALFF-ISILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHHHHHhcCccHHHHHH-HHHHHHHHHHHHHHhCCCC
Confidence 9988773 3 233333 3333333334444445554
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-11 Score=104.04 Aligned_cols=313 Identities=14% Similarity=0.167 Sum_probs=182.6
Q ss_pred hhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHH
Q 016431 4 AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL 83 (389)
Q Consensus 4 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 83 (389)
-++...+.|..|.|++++++.+...+...+..+.++...+-+..++.|++.+. ..+-.+++-...|+++-.++.+...+
T Consensus 58 l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~ra 136 (412)
T PF01770_consen 58 LLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRA 136 (412)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999998865 56778899999999988999999999
Q ss_pred HHHHHHHHHHHhcccc------chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHH
Q 016431 84 SVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 157 (389)
Q Consensus 84 ~~~lG~~l~~~i~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (389)
+.-+|-.++..+|..+ +.+...++......++++..+++|..++...-+++.++... ..+....+.++..+..
T Consensus 137 a~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~ 215 (412)
T PF01770_consen 137 ATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANESESDKMNESPESS 215 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-cccccccccccccccc
Confidence 8888888888888776 56777777777677777777888887654433222211111 0000000000000000
Q ss_pred -HHHHHhhhccccc-------cchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCC-cc----HHH
Q 016431 158 -EIKRSVASSSRRT-------AIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISS-SN----VAT 224 (389)
Q Consensus 158 -~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~ 224 (389)
+.+++.+..+... ....++..+++. ++...+.+....+++.....|...+.++..-++ .. ..-
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~----ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~Ve 291 (412)
T PF01770_consen 216 SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPR----LLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVE 291 (412)
T ss_pred cccccCcccccchHHHHHHHHHHHHHHHhcCch----HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHH
Confidence 0000000011111 112222333333 333444444555556777777777777662221 11 344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHH--HHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeec
Q 016431 225 FGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGM--AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSL 302 (389)
Q Consensus 225 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (389)
....+.+.++.+..|++-.+..+...+..+..-. +...+++.. ....+....+..++...+..
T Consensus 292 A~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~---------------t~~Iwv~Y~~yIif~~~y~f 356 (412)
T PF01770_consen 292 AASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF---------------TGNIWVCYAGYIIFRSLYMF 356 (412)
T ss_pred HHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHHHHHHH
Confidence 4455666777788888855555543333332222 222222221 12223333333333333332
Q ss_pred ccccchhhhhccccccchhhhhhhHHHHHHHHHHHH
Q 016431 303 GVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWI 338 (389)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 338 (389)
..++...-++.....+.-|..+|++++...+-..+
T Consensus 357 -liTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 357 -LITIASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred -HHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 22333345555566677788888877665544433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=113.57 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=116.5
Q ss_pred ChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccC
Q 016431 200 GINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 277 (389)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (389)
.........|.+.++.|.+..+ .......++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 17 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 87 (485)
T TIGR00711 17 DSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--------- 87 (485)
T ss_pred HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc---------
Confidence 3455666778888888887555 66667789999999999999999999999998888887777665532
Q ss_pred CccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhH
Q 016431 278 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFL 356 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~ 356 (389)
...........+.+.+ .....+...+++.|.+|+++|+.+.++......+|..++|.+.+.+.+ .++...++
T Consensus 88 ------~~~~~l~~~~~~~G~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~ 160 (485)
T TIGR00711 88 ------PNLELMIIFRVIQGFG-GGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL 160 (485)
T ss_pred ------CCHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence 0111222222222222 233456667899999999999999999999999999999999999988 55566666
Q ss_pred HHHHHHHHHHHHHHhhcccCC
Q 016431 357 IYGIVCAFTVAFVSLWVPETK 377 (389)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~ 377 (389)
+.+.+..+...+..+..|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 161 INVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hhhHHHHHHHHHHHHHcCCcc
Confidence 666555555555555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=108.50 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........|.+.++.+.++.+ .......++..++.++.|+++||+|||+.+..+..+..++........
T Consensus 19 ~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~--------- 89 (392)
T PRK10473 19 IDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE--------- 89 (392)
T ss_pred HHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC---------
Confidence 444456677777888887655 445556778889999999999999999999888877777766655320
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 357 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~ 357 (389)
..........+...+ .....+....++.|.+|+++|+++.+..+....++..++|.+.+.+.+ .++...+.+
T Consensus 90 ------~~~~~~~~~~l~g~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~ 162 (392)
T PRK10473 90 ------TSSLFLAGRFLQGIG-AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYT 162 (392)
T ss_pred ------cHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHH
Confidence 011111222222221 122334556888999999999999999999999999999999988876 455556666
Q ss_pred HHHHHHHHHHHHHhhcccCC
Q 016431 358 YGIVCAFTVAFVSLWVPETK 377 (389)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~ 377 (389)
.+++..+...+.....||++
T Consensus 163 ~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 163 MAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 66666666665556666654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=107.86 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=109.8
Q ss_pred HHHHHHH-HHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc
Q 016431 203 GVLFYSS-NIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 279 (389)
Q Consensus 203 ~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
......+ .+.++.|.+..+ .......++..++.+..|+++||+|||+.+..+..+..++..+..+. .+
T Consensus 14 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~------ 84 (352)
T PF07690_consen 14 IISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA---SN------ 84 (352)
T ss_dssp HHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---CC------
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---hh------
Confidence 4445555 566677877666 55666778899999999999999999999999888888884444321 11
Q ss_pred cchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHH
Q 016431 280 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIY 358 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~ 358 (389)
.+.......+.+.+ .....+....++.|.+|+++|+..+++.+....+|..++|.+.+.+.+ .++...+++.
T Consensus 85 ------~~~~~~~~~l~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 85 ------FWLLLIARFLLGIG-SGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp ------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred ------HHHHhhhccccccc-cccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 11122222222222 234456667999999999999999999999999999999999999986 5666677777
Q ss_pred HHHHHHHHHHHHhhcc
Q 016431 359 GIVCAFTVAFVSLWVP 374 (389)
Q Consensus 359 ~~~~~~~~~~~~~~~~ 374 (389)
+++..+..++...+.+
T Consensus 158 ~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 158 AILSLIAAILFILFLP 173 (352)
T ss_dssp HHHHHHHHHHHHCCC-
T ss_pred cchhhhhhhhHhhhhh
Confidence 7777766554334443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.1e-11 Score=106.11 Aligned_cols=155 Identities=12% Similarity=0.054 Sum_probs=105.2
Q ss_pred HHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccch
Q 016431 205 LFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFY 282 (389)
Q Consensus 205 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (389)
++..+++.++.|.+... .......+...+..++.|+++||+|||+.+..+..+..++.+.....
T Consensus 31 ~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-------------- 96 (400)
T PRK11646 31 PLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-------------- 96 (400)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--------------
Confidence 33333444567776655 44444467777778999999999999999999888888877766532
Q ss_pred hHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHH
Q 016431 283 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVC 362 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~ 362 (389)
...+.......+...+ .....|...+++.|.+|+++|++++|+.+...++|..++|.+.+.+.+.++...+++.+...
T Consensus 97 -~~~~~l~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~ 174 (400)
T PRK11646 97 -HEPWLLWLSCILSGLG-GTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLF 174 (400)
T ss_pred -ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0111111222211211 12234555688899999999999999999999999999999999998766666666666655
Q ss_pred HHHHHHHHhhccc
Q 016431 363 AFTVAFVSLWVPE 375 (389)
Q Consensus 363 ~~~~~~~~~~~~~ 375 (389)
.+..++.....|+
T Consensus 175 ~~~~i~~~~~~~~ 187 (400)
T PRK11646 175 VLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHhCCc
Confidence 5554444445554
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-11 Score=106.77 Aligned_cols=161 Identities=13% Similarity=0.136 Sum_probs=113.0
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........|.+.++.|.+..+ .......++..++.++.|++.||+|||+.+..+..+.+++.++....
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~---------- 88 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS---------- 88 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh----------
Confidence 345555667777788887655 56666789999999999999999999999999988888877766542
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 357 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~ 357 (389)
.+.........+.+.+.+ ...+.......|..|+++|+.+++.......++..++|.+.+.+.+ .++...+.+
T Consensus 89 -----~~~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 89 -----SSYLMLAIGRLVSGFPHG-AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred -----CcHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 111122222222222211 2234445678889999999999999999999999999999998887 566666777
Q ss_pred HHHHHHHHHHHHHhhcccCC
Q 016431 358 YGIVCAFTVAFVSLWVPETK 377 (389)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~ 377 (389)
.+++..+..+......||.+
T Consensus 163 ~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 163 IAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 66665555555555566643
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=109.79 Aligned_cols=175 Identities=12% Similarity=0.060 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHH
Q 016431 187 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 264 (389)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 264 (389)
+....+..+....-......-.|.+.++.+.+..+ +....+.++...+.+..|+++||+|||+.+..+..+..++.++
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34444444444444556666778888888876555 5556667788888999999999999999999999888888777
Q ss_pred HHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccc-cccchhhhhhhHHHHHHHHHHHHHHHHh
Q 016431 265 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEI-LPVNIKSLAGSVATLANWLVSWIVTMTA 343 (389)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 343 (389)
.+.. .+....+.+-.+.+.+.+ ...|.......+. .|+++|++++|+......+|..++|.+.
T Consensus 88 ~~~a---------------~~~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lg 151 (495)
T PRK14995 88 AAFS---------------PTASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVG 151 (495)
T ss_pred HHHc---------------CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6642 111122222222222222 2334333445444 4788999999999999999999999999
Q ss_pred HHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCC
Q 016431 344 NFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETK 377 (389)
Q Consensus 344 g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
+.+.+ .++.+.|++...+..+...+.....|+++
T Consensus 152 g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 152 GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99988 45666676666666665555566666543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-12 Score=115.21 Aligned_cols=125 Identities=14% Similarity=0.284 Sum_probs=104.3
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc----chhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
++.++.|+++||+|||+++..+.++.+++..+....+ +.+.+++.+++.|++.+...+....++.|++|+++|+++
T Consensus 266 ~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~ 345 (418)
T TIGR00889 266 FFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASA 345 (418)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 4578899999999999999999999998877776642 245677889999999988888889999999999999999
Q ss_pred hhhhH-HHHHHHHHHHHHhcccc----------chHHHHHhhhHHHHHH-HHHHhcccCCc
Q 016431 78 GSVNQ-LSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTLL-IPGLFFIPESP 126 (389)
Q Consensus 78 ~~~~~-~~~~lG~~l~~~i~~~~----------~wr~~f~~~~~~~~~~-~~~~~~~~e~p 126 (389)
+++.+ ...++|.++||.+++.+ ||+..|.+.++..++. +...++++|+.
T Consensus 346 ~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 346 QGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99997 67889999999999876 3899998887776665 44455677763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=104.57 Aligned_cols=167 Identities=11% Similarity=-0.029 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHH
Q 016431 185 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 262 (389)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 262 (389)
+..+...+..+.............|.+.++.+.+..+ .......++..++.++.|++.||+|||+.+..+..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 86 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333444443333455666778888888887666 45555678889999999999999999999888887777776
Q ss_pred HHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHH
Q 016431 263 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT 342 (389)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 342 (389)
.+.... ...........+...+.+ ...+....++.|.+|+++|+...+..+....+++.++|.+
T Consensus 87 ~l~~~~---------------~~~~~~~~~~~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 150 (394)
T PRK03699 87 AGLMFS---------------HSLALFSIAMFVLGVVSG-ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPII 150 (394)
T ss_pred HHHHHc---------------chHHHHHHHHHHHHHhhH-hhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 665532 011111122222222222 2233445788899999999999999988888999999999
Q ss_pred hHHHhh--hccchhhHHHHHHHHHHHH
Q 016431 343 ANFLLD--WSSGGTFLIYGIVCAFTVA 367 (389)
Q Consensus 343 ~g~l~~--~~~~~~~~~~~~~~~~~~~ 367 (389)
.+.+.+ .++...+...+++..+..+
T Consensus 151 ~~~l~~~~~gw~~~f~~~~~~~~~~~~ 177 (394)
T PRK03699 151 AAYLLARSIEWYWVYACIGLVYVAIFI 177 (394)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 988765 3455566655555444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=104.03 Aligned_cols=176 Identities=10% Similarity=0.026 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHH
Q 016431 185 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 262 (389)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 262 (389)
..++...+.+...+..-..+..-.|.+.++.+++..+ .......+..-++..+.|.++||.+.|+.+..++++.++..
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~n 108 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHH
Confidence 3445555555554444556677778888888888777 56666788899999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHH
Q 016431 263 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT 342 (389)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 342 (389)
+++++.. ....+..+......+...-.|.+...+..-+|+++||+..++-|+..++|+.+.|.+
T Consensus 109 il~Gfs~----------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~ 172 (448)
T COG2271 109 ILFGFSP----------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLV 172 (448)
T ss_pred HHHhhhh----------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHH
Confidence 9988641 122222222223333333344445778889999999999999999999999999999
Q ss_pred h--HHHhh-hccchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 343 A--NFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 343 ~--g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
. +.+.+ .+....|+.-++++.+.++++++..+++
T Consensus 173 ~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 173 ALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9 87777 4566678888888888888877776654
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.9e-11 Score=108.12 Aligned_cols=168 Identities=14% Similarity=0.079 Sum_probs=112.9
Q ss_pred HHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHH
Q 016431 192 LLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 269 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (389)
+..+.............|.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~- 95 (471)
T PRK10504 17 FGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS- 95 (471)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-
Confidence 333333334456667788888888887665 44455567778899999999999999999888777766666554421
Q ss_pred hhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-
Q 016431 270 FLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD- 348 (389)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~- 348 (389)
. ..........+.+.+ .....|....++.|.+|+++|+++.|+.+....+|..++|.+.|.+.+
T Consensus 96 --~------------~~~~l~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~ 160 (471)
T PRK10504 96 --G------------TLNELLLARVLQGVG-GAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY 160 (471)
T ss_pred --C------------CHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 0 011112222222222 222345566888999999999999999999999999999999999988
Q ss_pred hccchhhHHHHHHHHHHHHHHHhhccc
Q 016431 349 WSSGGTFLIYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
.++...+.+......+.........++
T Consensus 161 ~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 161 ASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444555665555545444444444444
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=109.68 Aligned_cols=158 Identities=17% Similarity=0.101 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCcc
Q 016431 203 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 280 (389)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (389)
......|.+.++.|.++.+ .......++..++.++.|++.||+|||+.+..+..+..++..+.....
T Consensus 12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----------- 80 (399)
T TIGR00893 12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG----------- 80 (399)
T ss_pred hhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc-----------
Confidence 4455556677777887665 666667888999999999999999999999888887777766665421
Q ss_pred chhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHH
Q 016431 281 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYG 359 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~ 359 (389)
..........+.+.+ .....+....++.|.+|+++|++.+++.+....+|..++|.+.+.+.+ .++...+...+
T Consensus 81 ----~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (399)
T TIGR00893 81 ----AYVSLYILRVLLGAA-EAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEG 155 (399)
T ss_pred ----CHHHHHHHHHHHHHH-HHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 111222222222222 223345666899999999999999999999999999999999998877 55556666666
Q ss_pred HHHHHHHHHHHhhcccC
Q 016431 360 IVCAFTVAFVSLWVPET 376 (389)
Q Consensus 360 ~~~~~~~~~~~~~~~~~ 376 (389)
+...+..++.....+++
T Consensus 156 ~~~~~~~~~~~~~~~~~ 172 (399)
T TIGR00893 156 VLGIIWGVLWLKFIPDP 172 (399)
T ss_pred HHHHHHHHHhhheecCC
Confidence 66555555555555543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=104.65 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHhhcCCCCcc-------HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcc
Q 016431 201 INGVLFYSSNIFANAGISSSN-------VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEG 273 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (389)
......+.|.+.++.|.+..+ .......+...++.++.|+++||+|||+.+..+.....++..+....
T Consensus 30 ~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----- 104 (408)
T PRK09874 30 FSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA----- 104 (408)
T ss_pred HHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-----
Confidence 344555677777777776443 23344567778899999999999999999988877777766554431
Q ss_pred cccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccc
Q 016431 274 FVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSG 352 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~ 352 (389)
...........+.+.+ .+..+....+..|..|+++|+.+.+..+....+|..++|.+.+.+.+ .+..
T Consensus 105 ----------~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 172 (408)
T PRK09874 105 ----------QNIWQFLILRALLGLL--GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLR 172 (408)
T ss_pred ----------hhHHHHHHHHHHHHHh--hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 0111111111111111 22345555778889999999999999999999999999999999887 4555
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccC
Q 016431 353 GTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
..+++.+++..+..+......+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 173 PVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 566666665555555555555543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-11 Score=107.46 Aligned_cols=160 Identities=14% Similarity=0.075 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........|.+.++.+.++.+ .......++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 31 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 100 (406)
T PRK11551 31 LQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA---------- 100 (406)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------
Confidence 344555667777888887665 55566678889999999999999999999998887776665554432
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 357 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~ 357 (389)
...........+.+.+. ....+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+ .++...+++
T Consensus 101 -----~~~~~~~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 101 -----WDFPSLLVARLLTGVGL-GGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred -----ccHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 01111222222222222 22345556889999999999999999999999999999999887766 344445555
Q ss_pred HHHHHHHHHHHHHhhcccC
Q 016431 358 YGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~ 376 (389)
.+++..+...+...+.||+
T Consensus 175 ~~~~~~~~~~~~~~~l~~~ 193 (406)
T PRK11551 175 GGVGPLLLVPLLMRWLPES 193 (406)
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 5554444444444555554
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.9e-11 Score=107.13 Aligned_cols=156 Identities=13% Similarity=-0.033 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........|.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+.++..++.++.+...
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--------- 122 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS--------- 122 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc---------
Confidence 345556667788888887666 344455677888999999999999999998887777776665554321
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh----------
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD---------- 348 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---------- 348 (389)
......+..++.+.+.+ ...+ ...++.|.+|+++|+.++|+.+...++|..+++.+.+.+.+
T Consensus 123 ------s~~~l~~~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 123 ------SATGFIAVRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred ------CHHHHHHHHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 01111111111111111 1222 33567899999999999999998888888888777665432
Q ss_pred hccchhhHHHHHHHHHHHHHHHhhc
Q 016431 349 WSSGGTFLIYGIVCAFTVAFVSLWV 373 (389)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (389)
.++...+++.+++.++..++..++.
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 1455566666666665554444443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.8e-11 Score=104.89 Aligned_cols=156 Identities=12% Similarity=0.116 Sum_probs=105.5
Q ss_pred HHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchh
Q 016431 206 FYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYS 283 (389)
Q Consensus 206 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (389)
...|.+.++.+.++.+ .......++..++.++.|+++||+|||+.+..+.....++....... .
T Consensus 29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~----------- 94 (394)
T PRK11652 29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA---H----------- 94 (394)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---c-----------
Confidence 3456777788887666 55566678889999999999999999999988877777766554431 0
Q ss_pred HHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHH
Q 016431 284 ILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVC 362 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~ 362 (389)
..........+.+.+.+ ...+....+..|.+++++++.+++..+....++..++|.+.+.+.+ .++...+.+.++..
T Consensus 95 -~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~ 172 (394)
T PRK11652 95 -SLTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLG 172 (394)
T ss_pred -cHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 01111122221111111 2234445677888888999999999999999999999999999887 45555666665555
Q ss_pred HHHHHHHHhhcccCC
Q 016431 363 AFTVAFVSLWVPETK 377 (389)
Q Consensus 363 ~~~~~~~~~~~~~~~ 377 (389)
.+...+.....||++
T Consensus 173 ~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 173 AGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHhCCccC
Confidence 555444555566643
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=104.60 Aligned_cols=160 Identities=12% Similarity=0.043 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc
Q 016431 202 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 279 (389)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
.......+.+.++.+.+... .......++..++.++.|+++||+|||+.+..+.....++........
T Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---------- 99 (406)
T PRK15402 30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ---------- 99 (406)
T ss_pred hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 33344456666778877655 445566788889999999999999999999888877777666554320
Q ss_pred cchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHH
Q 016431 280 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIY 358 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~ 358 (389)
..........+.+.+. ....+.......|.+|+++|....++......++..++|.+.+.+.+ .++...+++.
T Consensus 100 -----~~~~l~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 -----SIEQFTLLRFLQGIGL-CFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred -----cHHHHHHHHHHHHhHh-hhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 0111112222111111 12234556788899999999999999988888999999999999888 4555666666
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 016431 359 GIVCAFTVAFVSLWVPETK 377 (389)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~ 377 (389)
+++..+.........||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 174 AALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 6666555554555566654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.3e-11 Score=103.86 Aligned_cols=152 Identities=12% Similarity=0.001 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCcc
Q 016431 203 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 280 (389)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (389)
......|.+..+.+.+..+ .......++.+++.+..|+++||+|||+.+..+..+..++..+......... .
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~- 90 (365)
T TIGR00900 17 ITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG-----L- 90 (365)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC-----C-
Confidence 3444445566666665544 5556667888999999999999999999998888777776665554321110 0
Q ss_pred chhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHH
Q 016431 281 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYG 359 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~ 359 (389)
..........+...+ .....+...++..|..|+++|++.+|..+....+|..++|.+.+.+.+ .++...+++.+
T Consensus 91 ----~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 165 (365)
T TIGR00900 91 ----NIWQVYVLAGILAIA-QAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA 165 (365)
T ss_pred ----cHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 111112222222211 223345566899999999999999999999999999999999999987 45445555544
Q ss_pred HHHHHH
Q 016431 360 IVCAFT 365 (389)
Q Consensus 360 ~~~~~~ 365 (389)
+...+.
T Consensus 166 ~~~~~~ 171 (365)
T TIGR00900 166 VGFAIS 171 (365)
T ss_pred HHHHHH
Confidence 444333
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-11 Score=107.63 Aligned_cols=186 Identities=13% Similarity=0.024 Sum_probs=112.4
Q ss_pred HHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 016431 174 FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLL 251 (389)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 251 (389)
++.+.+++.++...+...+..+. ........|.+.++.+.++.+ .......++.++++++.|+++||++||+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l 85 (417)
T PRK10489 10 LSLLKTHPAFRAVFIARFISIFG----LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI 85 (417)
T ss_pred HHHHHhCCChhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE
Confidence 34444556555554443433332 334455566666666655444 555666788899999999999999999988
Q ss_pred HHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHH
Q 016431 252 LISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLA 331 (389)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 331 (389)
..+..+.+++...+........ ...........+...+.+ ...+....+..|..|+++|+++.++.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (417)
T PRK10489 86 LLARGTCGLGFIGLALNAFLPE----------PSLLAIYLLGLWDGFFGS-LGVTALLAATPALVGRENLMQAGAITMLT 154 (417)
T ss_pred EehHHHHHHHHHHHHHHHHcCC----------CcHHHHHHHHHHHHHHHH-HHHHHHhhhhhhccCHHHHHHHHHHHHHH
Confidence 8777666665554432211100 001111111111111111 12334457788999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhccc
Q 016431 332 NWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 332 ~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
..+|..++|.+.+.+.+ .++...+.+.++.. +...+.....|+
T Consensus 155 ~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 198 (417)
T PRK10489 155 VRLGSVISPALGGLLIAAGGVAWNYGLAAAGT-FITLLPLLRLPA 198 (417)
T ss_pred HhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhCCC
Confidence 99999999999999887 34444554444333 333344444554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.7e-12 Score=112.22 Aligned_cols=124 Identities=15% Similarity=0.253 Sum_probs=107.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
++.++.|++.||+||||.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|..|+++|+++.+++
T Consensus 264 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 343 (399)
T PRK05122 264 GARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAY 343 (399)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46788999999999999999999999998888888888888888999999999988888777888999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccCC
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPES 125 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~ 125 (389)
+....+|..+++.+.+.+ ||++.|++.+...++..+...+++++
T Consensus 344 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 344 SVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999998888877776 89999998888777776665555544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.8e-12 Score=112.89 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=105.3
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhh-
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV- 80 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~- 80 (389)
++++++|++.||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+....++.|.+|++.|+...+.
T Consensus 277 ~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 356 (420)
T PRK09528 277 LIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVG 356 (420)
T ss_pred HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeeh
Confidence 4678999999999999999999999999999999999999999999999998888777788899999999999887665
Q ss_pred hHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHH-HHHhcccCCc
Q 016431 81 NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PGLFFIPESP 126 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~-~~~~~~~e~p 126 (389)
++....+|.++++.+.+.+ |||..|.+.++..++.. +....++++|
T Consensus 357 ~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 357 FQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 6777889999999988887 89999998777666554 4444455544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-09 Score=95.55 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=84.4
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.+.+.|+.|.|..++++...+.......-+ +|-+.++..-.+.|+|.+..+...-.+++|..+++++.+..++.
T Consensus 65 v~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~ 143 (461)
T KOG3098|consen 65 VSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIF 143 (461)
T ss_pred HHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHH
Confidence 46788999999999999999999999887766654 56777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc
Q 016431 82 QLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~ 99 (389)
......+.++|..+-..+
T Consensus 144 Wai~~~~li~Ggi~l~~~ 161 (461)
T KOG3098|consen 144 WAIGQSSLIIGGIILFIY 161 (461)
T ss_pred HHHHHHHHHhhhHhheee
Confidence 998888888886655444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-10 Score=101.56 Aligned_cols=132 Identities=16% Similarity=0.033 Sum_probs=93.2
Q ss_pred hhHHHHHHHH-HHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccC
Q 016431 201 INGVLFYSSN-IFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 277 (389)
Q Consensus 201 ~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (389)
......+.|. +.++.|.++.+ .......++..++.++.|+++||+|||+.+..+..+..++.++......
T Consensus 17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~------- 89 (366)
T TIGR00886 17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ------- 89 (366)
T ss_pred HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 4556666674 55678887666 5566678889999999999999999999999998888887776654310
Q ss_pred CccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 278 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
..........+.+.+ . +..+....++.|.+|+++|+.+.++.....++|..+++.+.+.+.+
T Consensus 90 -------~~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 90 -------SYSVLLLLRLFIGIA-G-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred -------hHHHHHHHHHHHHHh-c-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 111122222222222 1 2223345788999999999999999998888888888888776654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-11 Score=106.81 Aligned_cols=159 Identities=9% Similarity=-0.031 Sum_probs=110.6
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........|.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 81 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST--------- 81 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh---------
Confidence 345555667777777887665 566667888899999999999999999999999888888777766431
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHH-HhHHHhh-hccchhhH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTM-TANFLLD-WSSGGTFL 356 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~-~~g~l~~-~~~~~~~~ 356 (389)
..........+.+.+ .....+...+++.|.+|+++|+.+.++.+....+|..++|. +.+.+.+ .++...+.
T Consensus 82 ------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 82 ------SLWVMAALWALNGIF-QGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred ------hHHHHHHHHHHHHhh-ccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 111222222222222 23335666689999999999999999999999999999994 5555555 44555566
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 016431 357 IYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~ 375 (389)
+.+.+..+..++.....++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~ 173 (379)
T TIGR00881 155 VPGIIAIIVSLICFLLLRD 173 (379)
T ss_pred HHHHHHHHHHHHHheeeCC
Confidence 6666555555555555554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-10 Score=102.23 Aligned_cols=133 Identities=10% Similarity=-0.100 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccc
Q 016431 204 VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRF 281 (389)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (389)
...+.+.+.++.+.+..+ .......++..++.++.|++.||+|||+.+..+..+..++..+........
T Consensus 32 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~--------- 102 (402)
T TIGR00897 32 EQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGH--------- 102 (402)
T ss_pred HHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC---------
Confidence 344556666777887665 556667888999999999999999999999988888777655432110000
Q ss_pred hhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHH-HHHHHHhHHHhh
Q 016431 282 YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVS-WIVTMTANFLLD 348 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~~~~~~g~l~~ 348 (389)
...........+.+.+.+ ...+.......+..|+++|++++|+.+....+|. .++|.+.+.+.+
T Consensus 103 --~~~~~l~~~~~i~G~g~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~ 167 (402)
T TIGR00897 103 --ANYPLILLFYGIRGLGYP-LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP 167 (402)
T ss_pred --ccHHHHHHHHHHHHcchH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 001111122222222222 1223344667788999999999999999999986 578998888876
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=104.04 Aligned_cols=151 Identities=16% Similarity=0.073 Sum_probs=104.6
Q ss_pred HHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHH
Q 016431 191 GLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 268 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (389)
.+..+..........+..+.+.++.+.++.+ .......++..++.++.|++.||+|||+.+..+.....++.......
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 103 (426)
T PRK12307 24 WLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA 103 (426)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333445566667777788887665 55556678889999999999999999999999998888877766543
Q ss_pred HhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 269 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
. ......+...+.+.+. ....+....++.|.+|+++|+++.++......+|..+++.+.+.+.+
T Consensus 104 ~---------------~~~~l~~~r~l~G~g~-g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~ 167 (426)
T PRK12307 104 S---------------GVIMLTLSRFIVGMGM-AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE 167 (426)
T ss_pred h---------------HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence 1 1112222222222221 23345556888999999999999999999999999999999888877
Q ss_pred -hccchhhHH
Q 016431 349 -WSSGGTFLI 357 (389)
Q Consensus 349 -~~~~~~~~~ 357 (389)
.++...+++
T Consensus 168 ~~~w~~~f~i 177 (426)
T PRK12307 168 AYGWRAAFFV 177 (426)
T ss_pred cCCHHHHHHH
Confidence 344444443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-10 Score=102.57 Aligned_cols=146 Identities=13% Similarity=0.116 Sum_probs=98.6
Q ss_pred ChhHHHHHHHHHHhh-cCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHhHHHHHHHHHHHHHHhhcccc
Q 016431 200 GINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASFFLVSVAFFLEGFV 275 (389)
Q Consensus 200 ~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (389)
.++....+++.++.+ .|+++.+ ...........++.+++|+++||+ |||+.+..+.++..++.+++.... .
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~----~- 98 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE----I- 98 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh----c-
Confidence 355666677766654 5776655 445555677788999999999998 999999999888888776554210 0
Q ss_pred cCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccc--hhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccc
Q 016431 276 SEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN--IKSLAGSVATLANWLVSWIVTMTANFLLD-WSSG 352 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~ 352 (389)
.......+......+.+ ...+...++..|.+|++ +|++++++.....++|+.++|.+.+++.+ .++.
T Consensus 99 ---------~~~~~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~ 168 (493)
T PRK15462 99 ---------HPSFLYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA 168 (493)
T ss_pred ---------chhHHHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence 00011111111111222 22344458899999976 69999999999999999999999999987 5555
Q ss_pred hhhHHHHH
Q 016431 353 GTFLIYGI 360 (389)
Q Consensus 353 ~~~~~~~~ 360 (389)
..|...++
T Consensus 169 ~~F~iaai 176 (493)
T PRK15462 169 MGFGLAAV 176 (493)
T ss_pred HHHHHHHH
Confidence 55655443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=104.93 Aligned_cols=153 Identities=14% Similarity=0.028 Sum_probs=104.2
Q ss_pred HHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHH
Q 016431 209 SNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILG 286 (389)
Q Consensus 209 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (389)
|.+.++.+.+... .......++..++.+..|+++||+|||+.+..+..+..++....... . ..
T Consensus 40 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---~------------~~ 104 (413)
T PRK15403 40 INVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT---T------------SM 104 (413)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc---C------------CH
Confidence 4455566665544 45555678888999999999999999999998887777766655532 0 11
Q ss_pred HHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHH
Q 016431 287 ILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFT 365 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~ 365 (389)
...+..-.+.+.+.+ ...+..+.+..|.+|++++++.+++.+....++..++|.+.+.+.+ .++...|++.++...+.
T Consensus 105 ~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~ 183 (413)
T PRK15403 105 TQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA 183 (413)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 111222222121111 1233445778899999999999999999999999999999998887 45666677766665555
Q ss_pred HHHHHhhcccCC
Q 016431 366 VAFVSLWVPETK 377 (389)
Q Consensus 366 ~~~~~~~~~~~~ 377 (389)
.+...+..||++
T Consensus 184 ~~~~~~~lp~~~ 195 (413)
T PRK15403 184 FVGLLLAMPETV 195 (413)
T ss_pred HHHHHHhCCCCc
Confidence 544455567654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=102.32 Aligned_cols=159 Identities=13% Similarity=-0.031 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc
Q 016431 202 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 279 (389)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
.......|.+.++.+.+..+ .......++..++.+..|++.||+|||+.+.........+...... ..
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~---~~------- 77 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLD---PF------- 77 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH---hc-------
Confidence 34555667777888887666 4555567888899999999999999988765443333222211110 00
Q ss_pred cchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHH
Q 016431 280 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIY 358 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~ 358 (389)
.....+..-.+.+.+ .+..+......+|.+|+++|++++++.+....+|..+++.+.+.+.+ .++...+.+.
T Consensus 78 -----~~~~l~~~R~l~G~g--~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 -----NYEWLLACQLLAALG--QPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred -----cHHHHHHHHHHHHhH--hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 011222222222222 22223334566889999999999999999999999999999999887 5666667676
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 016431 359 GIVCAFTVAFVSLWVPETK 377 (389)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~ 377 (389)
+++..+..++..+.+||+.
T Consensus 151 ~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 151 AAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 7777776666777777654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.8e-11 Score=105.43 Aligned_cols=317 Identities=12% Similarity=0.121 Sum_probs=165.7
Q ss_pred hhchHHHHhhhh-----hhhHHHHhhHHHHHHHHHHHhcc----chhHHHHHHHHhhhcccccccccceeeeeccC--cc
Q 016431 4 AIASGQIAEYIG-----RKGSLMIAAVPNIIGWLIISFSK----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAP--QN 72 (389)
Q Consensus 4 ~~~~g~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~ 72 (389)
-+++|.++|.+- ||+-++++.++..++.+..+..+ +.....+.-++..+|.+....++-+++.|... ++
T Consensus 41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~ 120 (433)
T PF03092_consen 41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE 120 (433)
T ss_pred hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence 478999999763 55556667777766666565543 45666677788889999999999999999883 34
Q ss_pred cccchhhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhc-ccCCchhhHhcCChhHHHHHHHHHhc
Q 016431 73 MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRG 147 (389)
Q Consensus 73 ~r~~~~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~ 147 (389)
+|+...+.......+|.+++..+++.+ ++|..|.+.++...+..+..++ .+|.++ . .+ ++...
T Consensus 121 ~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~-~-~~---~~~~~------- 188 (433)
T PF03092_consen 121 SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKV-R-PA---DEVFS------- 188 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccc-c-cc---chhhc-------
Confidence 467888888888899999998888877 7888888887766666544444 444211 0 00 00000
Q ss_pred CCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHH-HHHHHHHHhhcChhH-HHHHHHHHHhhcCCCCcc--HH
Q 016431 148 FDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMI-GIGLLVLQQLSGING-VLFYSSNIFANAGISSSN--VA 223 (389)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~ 223 (389)
..++ ..+......++......+.++++..+...+ ..++....... ... ..++..+.....++++.. ..
T Consensus 189 ~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~a~~fy~~~~~~~gp~fs~~f~~~~ 260 (433)
T PF03092_consen 189 FGKE-------EVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSI-SSASSFYFQTDALGGPHFSPSFYGTL 260 (433)
T ss_pred cccc-------ccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC-CCccEEEEEeccccccccCHHHHHHH
Confidence 0000 000000000111112223333332222222 11111111110 011 111111111111133322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcc--cccCCccchhHHHHHHHHHhhheeeeee
Q 016431 224 TFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEG--FVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 224 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
..+..++.+++..+..+...+..-|+++....++..+..+.-.+.....+ ..-+|. ++...... +. .....
T Consensus 261 ~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~-~f~lgd~~-l~-----~~~~~ 333 (433)
T PF03092_consen 261 SIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ-WFALGDTI-LE-----EVIGM 333 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe-EEEEEhHH-HH-----HHHHH
Confidence 34445566666666666555556666665554443332221111000000 000111 11100000 00 01112
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
....|.. .+.+|+.|+..-|+.+++..+..++|..++..++..+.+
T Consensus 334 i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~ 379 (433)
T PF03092_consen 334 IAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLME 379 (433)
T ss_pred HHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444 778899999999999999999999999999999988876
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-10 Score=105.68 Aligned_cols=133 Identities=10% Similarity=0.029 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........|.+.++.+.+..+ .......++..++.++.|++.||+|||+.+..+..+..++.+......
T Consensus 36 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 106 (496)
T PRK03893 36 FVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP--------- 106 (496)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 445556667777788887655 455556788889999999999999999999888888777776665421
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
..........+.+.+ ..+..+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+.
T Consensus 107 ------~~~~l~~~~~l~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 170 (496)
T PRK03893 107 ------GYWTLFIARLVIGMG-MAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV 170 (496)
T ss_pred ------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111122222222211 2233455568889999999999999999999999999999999998873
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.3e-11 Score=107.11 Aligned_cols=160 Identities=11% Similarity=-0.019 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccc
Q 016431 204 VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRF 281 (389)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (389)
.....|.+.+ .|.++.+ .......++..++.+..|++.||+|||+.+..+..+..++.+.........
T Consensus 46 ~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 115 (438)
T TIGR00712 46 FALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWAT--------- 115 (438)
T ss_pred HHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccccc---------
Confidence 3445555544 5777665 555667788899999999999999999988888777777666544221000
Q ss_pred hhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh--hccchhhHHHH
Q 016431 282 YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD--WSSGGTFLIYG 359 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~--~~~~~~~~~~~ 359 (389)
...........+...+.+. ..+.....+.|.+|+++|++++|+.+....++..++|.+.+...+ .++...+++.+
T Consensus 116 --~~~~~l~~~~~l~g~~~g~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~ 192 (438)
T TIGR00712 116 --SSIAIMFVLLFLNGWFQGM-GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPA 192 (438)
T ss_pred --chHHHHHHHHHHHHHHhhc-chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 0011111111111222222 223344777899999999999999999999999999988876554 34555666666
Q ss_pred HHHHHHHHHHHhhcccC
Q 016431 360 IVCAFTVAFVSLWVPET 376 (389)
Q Consensus 360 ~~~~~~~~~~~~~~~~~ 376 (389)
++..+..++..++.||+
T Consensus 193 ~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 193 ICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 66666555555555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-10 Score=104.67 Aligned_cols=160 Identities=11% Similarity=-0.048 Sum_probs=99.8
Q ss_pred HHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccc
Q 016431 204 VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRF 281 (389)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (389)
+....|++.++ +.+..+ .......++..++.++.|+++||+|||+.+..+..+..++.+.+.+......
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~-------- 118 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS-------- 118 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccc--------
Confidence 44556666655 777665 4556667888999999999999999999999888887777766654211000
Q ss_pred hhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHH-HHHHhHHHhh-hccchhhHHHH
Q 016431 282 YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWI-VTMTANFLLD-WSSGGTFLIYG 359 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~~~~g~l~~-~~~~~~~~~~~ 359 (389)
..........+...+.+ ...+.......|.+|+++|++++|+.+....+|..+ +|.+...+.. .++...+++.+
T Consensus 119 ---~~~~~~~~~~l~gi~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~ 194 (452)
T PRK11273 119 ---SIAVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPA 194 (452)
T ss_pred ---cHHHHHHHHHHHHHHHh-ccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 01111111111111112 223433467788899999999999999999888754 4443322222 34455666666
Q ss_pred HHHHHHHHHHHhhcccC
Q 016431 360 IVCAFTVAFVSLWVPET 376 (389)
Q Consensus 360 ~~~~~~~~~~~~~~~~~ 376 (389)
++..+..++..++.||+
T Consensus 195 ~~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 195 FAAILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHHHccCC
Confidence 66666555555666553
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=104.19 Aligned_cols=155 Identities=16% Similarity=0.138 Sum_probs=109.3
Q ss_pred HHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchh
Q 016431 206 FYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYS 283 (389)
Q Consensus 206 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (389)
...|.+.++.|.++.+ .......++..++.++.|++.||+|||+.+..+..+..++........
T Consensus 12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~-------------- 77 (377)
T PRK11102 12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ-------------- 77 (377)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--------------
Confidence 4456666777887665 555667788899999999999999999999988888887777665321
Q ss_pred HHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHH
Q 016431 284 ILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVC 362 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~ 362 (389)
..........+...+ .....+...++..|.+|+++|+++.++.+....+|..++|.+.+.+.+ .++...+.+.+.+.
T Consensus 78 -~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (377)
T PRK11102 78 -TIDQLIYMRFLHGLA-AAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAA 155 (377)
T ss_pred -cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 011112222222222 222334556888999999999999999999999999999999999888 45555666666666
Q ss_pred HHHHHHHHhhcccC
Q 016431 363 AFTVAFVSLWVPET 376 (389)
Q Consensus 363 ~~~~~~~~~~~~~~ 376 (389)
.+...+.....+|+
T Consensus 156 ~~~~~~~~~~~~~~ 169 (377)
T PRK11102 156 ILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHhCCcc
Confidence 65555555556654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.4e-10 Score=102.02 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=105.3
Q ss_pred HHHHhhcChhHHHHHHHHHHhh---cCCCCcc--HHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHhHHHHHHHHHHH
Q 016431 193 LVLQQLSGINGVLFYSSNIFAN---AGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVS 266 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~ 266 (389)
..+.....++....+++.++++ .|.+..+ .......+...++.+++|+++|| +|||+.+..+..+..++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~ 97 (475)
T TIGR00924 18 VELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 3333333456666667777654 5776555 55566678889999999999999 8999999999998888877766
Q ss_pred HHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccch---hhhhhhHHHHHHHHHHHHHHHHh
Q 016431 267 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNI---KSLAGSVATLANWLVSWIVTMTA 343 (389)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~g~~~~~~~~ 343 (389)
... .......+..+...+ .....|...++.+|.+|+++ |+++.++.+...++|..++|.+.
T Consensus 98 ~~~---------------~~~~~~~~~~l~g~g-~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~ 161 (475)
T TIGR00924 98 MSI---------------YPDLIFYGLGTIAVG-SGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLA 161 (475)
T ss_pred hcc---------------cHhHHHHHHHHHHhc-cccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHH
Confidence 420 011122222222222 22334555688888888754 88899999999999999999999
Q ss_pred HHHhh-hccchhhHHHHHH
Q 016431 344 NFLLD-WSSGGTFLIYGIV 361 (389)
Q Consensus 344 g~l~~-~~~~~~~~~~~~~ 361 (389)
+++.+ .++...+...++.
T Consensus 162 g~l~~~~g~~~~f~~~~~~ 180 (475)
T TIGR00924 162 GVIAENYGYHVGFNLAAVG 180 (475)
T ss_pred HHHHHhcChHHHHHHHHHH
Confidence 99988 4555556555543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=101.88 Aligned_cols=149 Identities=12% Similarity=0.097 Sum_probs=100.9
Q ss_pred HHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHH
Q 016431 208 SSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSIL 285 (389)
Q Consensus 208 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (389)
.+...++.+.++.. .......+...+..++.|+++||+|||+++..+..+..++.+.+... ..
T Consensus 26 ~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~---------------~~ 90 (393)
T PRK11195 26 AIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG---------------IH 90 (393)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH---------------HH
Confidence 34445566665544 45556678888999999999999999999999988877766554321 00
Q ss_pred HHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHH
Q 016431 286 GILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFT 365 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 365 (389)
. .....+ .........|...+++.|.+|+++|++++|+.+....++..+||.+.|.+.+......+.+.+.. .+.
T Consensus 91 ~---~~~r~l-~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~-~~~ 165 (393)
T PRK11195 91 P---LLAYGL-VGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALI-YLL 165 (393)
T ss_pred H---HHHHHH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1 111111 12223345677779999999999999999999999999999999999999986533333333322 222
Q ss_pred HHHHHhhcccC
Q 016431 366 VAFVSLWVPET 376 (389)
Q Consensus 366 ~~~~~~~~~~~ 376 (389)
..+....+||.
T Consensus 166 ~~~~~~~l~~~ 176 (393)
T PRK11195 166 AALFNLFIPRL 176 (393)
T ss_pred HHHHHhcCCCC
Confidence 33344555553
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-11 Score=107.61 Aligned_cols=122 Identities=17% Similarity=0.254 Sum_probs=100.1
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.+++.+...+....+..|..|+ +|+++.++.
T Consensus 267 ~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~ 345 (393)
T PRK15011 267 PTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLY 345 (393)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHH
Confidence 4678899999999999988887776666555555677888888899988887777666667778888875 599999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcccC
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 124 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e 124 (389)
+...++|..++|.+++.+ +|+..|++.++..++.++..++.||
T Consensus 346 ~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 346 TNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 998999999999998887 8999999888888887777777765
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-10 Score=101.06 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHH-hhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHhHHHHHHHHHHHHHHhhccccc
Q 016431 201 INGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVAFFLEGFVS 276 (389)
Q Consensus 201 ~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (389)
++....+++.++ ++.|.+... ...........+..+++|+++|| +|||+.+..+.++..++.+++.+...
T Consensus 30 ~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~------ 103 (489)
T PRK10207 30 YYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL------ 103 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 445554455444 457776655 33333445566667799999999 99999999999999998877764210
Q ss_pred CCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccch--hhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccch
Q 016431 277 EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNI--KSLAGSVATLANWLVSWIVTMTANFLLD-WSSGG 353 (389)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~ 353 (389)
.......+......+ .....|...+++.|.+|+++ |+.++++.....++|..++|.+.|++.+ .+++.
T Consensus 104 --------~~~ll~~~~~l~~ig-~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~ 174 (489)
T PRK10207 104 --------KPDLIFIALGTIAVG-NGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSV 174 (489)
T ss_pred --------chhHHHHHHHHHHhc-cccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 001111222222222 23334555689999998874 5778999999999999999999999988 55445
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 016431 354 TFLIYGIVCAFTVAFVSLW 372 (389)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~ 372 (389)
.|++. .+..+..++.+..
T Consensus 175 ~F~i~-~i~~~~~~~~~~~ 192 (489)
T PRK10207 175 TYNLC-GAGLIIALLVYFA 192 (489)
T ss_pred HHHHH-HHHHHHHHHHHHH
Confidence 55553 3334433433333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=96.13 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
.....+++..++.++..|.++||+|||.++..+....++...+.+... ....++..=+.. +..
T Consensus 72 flGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~----------------~F~afv~aR~l~-Gi~ 134 (451)
T KOG2615|consen 72 FLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR----------------NFAAFVLARFLG-GIF 134 (451)
T ss_pred hHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHhh-hhc
Confidence 555667899999999999999999999999999998888877776431 111222211222 223
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
-+...+..++++|++++++|+.+++.+++...+|..+||.++|++..
T Consensus 135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 34455667999999999999999999999999999999999999987
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.9e-10 Score=99.34 Aligned_cols=142 Identities=9% Similarity=-0.094 Sum_probs=99.3
Q ss_pred HHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHH
Q 016431 192 LLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 269 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (389)
+..+.............|.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+..+..++.......
T Consensus 13 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~- 91 (381)
T PRK03633 13 CGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM- 91 (381)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 333333344556677788888888887655 56666778889999999999999999999998888888777665532
Q ss_pred hhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 270 FLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
.......+...+.+.+. ....+.......+..++++|+++++..+....+|..++|.+.+.+.+.
T Consensus 92 --------------~~~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 92 --------------VGFWSWLAWRFVAGIGC-AMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred --------------ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 11112222222222221 122344345566788888999999999999999999999999988764
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-11 Score=102.87 Aligned_cols=183 Identities=14% Similarity=0.044 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHH
Q 016431 185 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 262 (389)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 262 (389)
......++....+..--+.+....+..-+..+.++.. +......+...+++++.|++.||++|++++..+..+..++.
T Consensus 33 ~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 33 LTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence 3344455555555544555555555554455665554 77788889999999999999999999999999998888888
Q ss_pred HHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHH
Q 016431 263 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT 342 (389)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 342 (389)
+..++.. .-+...+.-.+.+.+ .....|+..++++|.+|.++|++.+++.+....+|..+|-.+
T Consensus 113 ~~~~fs~---------------~Fwq~~l~R~~vGiG-eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vv 176 (493)
T KOG1330|consen 113 FASGFSN---------------HFWQVLLCRGFVGIG-EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVV 176 (493)
T ss_pred HHHHHHH---------------HHHHHHHHHHHhccc-hhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEe
Confidence 8777541 112223333333333 456678888999999999999999999999999999999988
Q ss_pred hHHHhh-hc-cchhhHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 016431 343 ANFLLD-WS-SGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEE 383 (389)
Q Consensus 343 ~g~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (389)
.+.+.+ .+ +.+.+...+++..+.+++..++.+|++++..+|
T Consensus 177 gs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 177 GSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred eeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 888877 23 566788888888888888888887766544333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.3e-10 Score=98.85 Aligned_cols=139 Identities=13% Similarity=-0.071 Sum_probs=89.4
Q ss_pred HHHHHHHHH-HhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc
Q 016431 203 GVLFYSSNI-FANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 279 (389)
Q Consensus 203 ~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
......|.+ .++.|.+..+ .......+...+++++.|+++||+|||+.+..+.+...++.............
T Consensus 33 ~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~----- 107 (392)
T PRK12382 33 LPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVS----- 107 (392)
T ss_pred HHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccc-----
Confidence 333344443 4567887666 55666678889999999999999999999888877665554332221111000
Q ss_pred cchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 280 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
...+....++...+.+.+.+ ...+...++..|..|+++|+++++........+..++|.+.+.+.+.
T Consensus 108 --~~~~~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (392)
T PRK12382 108 --APFKFALLVVGRLILGFGES-QLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH 174 (392)
T ss_pred --hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00111122222222222221 22344446778999999999999999999999999999999988773
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.3e-10 Score=98.85 Aligned_cols=146 Identities=14% Similarity=0.005 Sum_probs=97.6
Q ss_pred HHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHH
Q 016431 209 SNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILG 286 (389)
Q Consensus 209 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (389)
+.+.++.+.++.+ .......++..++.++.|+++||+|||+.+..+..+..++........ ..
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------------~~ 94 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE---------------SA 94 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc---------------CH
Confidence 4455677776665 555566788889999999999999999999888777776665554310 01
Q ss_pred HHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHH
Q 016431 287 ILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFT 365 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~ 365 (389)
........+.+.+.+ ...+....+..|.+|+++++...+..+....++..++|.+.+.+.+ .++...+++.+....+.
T Consensus 95 ~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~ 173 (401)
T PRK11043 95 AQLLVLRFVQAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLL 173 (401)
T ss_pred HHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 111122222111111 1223345778899999989999999988899999999999999988 45555566665555544
Q ss_pred HHHHH
Q 016431 366 VAFVS 370 (389)
Q Consensus 366 ~~~~~ 370 (389)
.+...
T Consensus 174 ~~~~~ 178 (401)
T PRK11043 174 ILPTL 178 (401)
T ss_pred HHHHH
Confidence 44333
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-10 Score=94.49 Aligned_cols=225 Identities=14% Similarity=0.079 Sum_probs=130.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeee-ecc----Ccccccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIA-EIA----PQNMRGS 76 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~-~~~----~~~~r~~ 76 (389)
+.+++.|.++||+|||+.-+...++.+++++. -..++++.++++|++.|++.+..+.+--+++. |.- |++..+.
T Consensus 84 i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~ 162 (354)
T PF05631_consen 84 IFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSD 162 (354)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 45678899999999999999999999999964 45689999999999999999888877666543 332 2222233
Q ss_pred hhhhhH-HHHHHHHHHHHHhcccc------chHHHHHhhhHHHHHHHHH-HhcccCCchhhHhcCChhHHHHHHHHHhcC
Q 016431 77 LGSVNQ-LSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGF 148 (389)
Q Consensus 77 ~~~~~~-~~~~lG~~l~~~i~~~~------~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 148 (389)
.++... ...++-.+.+..++..+ |-..+|....+..++..+. ....+|.+... ++.
T Consensus 163 tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~---~~~------------- 226 (354)
T PF05631_consen 163 TFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDT---SSS------------- 226 (354)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCc---ccc-------------
Confidence 333333 23333445555555554 3367888877766666444 33456653200 000
Q ss_pred CcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCccHHHHHHH
Q 016431 149 DTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLG 228 (389)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (389)
.+..++....++.+.++++ .+...........+.+..+..|.|.+..+..--+...+.....
T Consensus 227 ---------------~~~~~~~~~a~~~i~~d~r---il~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM 288 (354)
T PF05631_consen 227 ---------------SSLSGSFREAWRAILSDPR---ILLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFM 288 (354)
T ss_pred ---------------cchHHHHHHHHHHHHcCch---hHHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHH
Confidence 0000111122344444433 3333444445555556666677777652211113336666677
Q ss_pred HHHHHHHHHHHHHHhh-hchhHHHHHHhHHHHHH
Q 016431 229 VVQVVATGVNTWLMDK-AGRRLLLLISSSGMAAS 261 (389)
Q Consensus 229 ~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~ 261 (389)
...++|+.+..++..| ......+.....+..++
T Consensus 289 ~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~ 322 (354)
T PF05631_consen 289 VAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVS 322 (354)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 8888898888766554 33334444444343333
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=101.73 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
.+......|.+.++.+.+..+ .......++..++.+..|+++||+|||+.+..+..+..++........
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--------- 89 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD--------- 89 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH---------
Confidence 445566778888888887666 566667888999999999999999999999998888888776665431
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 357 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~ 357 (389)
..........+.+.+.+ ...+.......|.+| ++|+.+.++......+|..+++++.+.+.+ .++...+.+
T Consensus 90 ------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 90 ------SLAALYLTYGLASAGVG-IAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred ------HHHHHHHHHHHHhHHHH-HHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 11122222222221111 122333355666666 569999999999999998887777766665 455556666
Q ss_pred HHHHHHHHHHHHHhhcc
Q 016431 358 YGIVCAFTVAFVSLWVP 374 (389)
Q Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (389)
.+++..+.......+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~ 178 (377)
T TIGR00890 162 MGIIFLLVIVLGAFLIG 178 (377)
T ss_pred HHHHHHHHHHHHHHhee
Confidence 66666665555555554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-10 Score=104.35 Aligned_cols=162 Identities=9% Similarity=0.016 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc
Q 016431 202 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 279 (389)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
..+....|.+.++.+.+..+ .......++..++.++.|+++||+|+|+.+..+.++.++....++.......
T Consensus 46 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~------ 119 (467)
T PRK09556 46 KNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGS------ 119 (467)
T ss_pred cChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhccc------
Confidence 34445567777888887666 5555667888899999999999999999988887777776666554211100
Q ss_pred cchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh----ccchhh
Q 016431 280 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW----SSGGTF 355 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----~~~~~~ 355 (389)
...........+.+.+ .....|....++.|.+|+++|+.++|+.+....+|..+++.+..++.+. +....+
T Consensus 120 ----~~~~~l~~~r~l~G~~-~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f 194 (467)
T PRK09556 120 ----VSLGLMIALWALSGFF-QSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMF 194 (467)
T ss_pred ----chHHHHHHHHHHHHHH-HhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHH
Confidence 0111112222222222 2223455668999999999999999999999999999999988766552 123344
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 016431 356 LIYGIVCAFTVAFVSLWVP 374 (389)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~ 374 (389)
.+.+++.++.+++.+++.+
T Consensus 195 ~~~g~~~~~~~i~~~~~~~ 213 (467)
T PRK09556 195 IFPSIIALIIGFIGLRYGS 213 (467)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 5555555555444444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=94.86 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........+.+.++.+.++.+ .......+...++.++.|++.||+|||+.+..+..+..++.......
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~---------- 84 (352)
T cd06174 15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA---------- 84 (352)
T ss_pred hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh----------
Confidence 445556667777777776555 55566678889999999999999999999988888888877776542
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh-ccchhhHH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW-SSGGTFLI 357 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~ 357 (389)
...........+...+ .....+....+..|.+|+++|++.++..+....+|..++|.+.+.+.+. +....+.+
T Consensus 85 -----~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 85 -----SSLWLLLVGRFLLGLG-GGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred -----ccHHHHHHHHHHHHcc-cccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 0111222222222222 2233456669999999999999999999999999999999999999884 34444444
Q ss_pred HHHHHHH
Q 016431 358 YGIVCAF 364 (389)
Q Consensus 358 ~~~~~~~ 364 (389)
.+....+
T Consensus 159 ~~~~~~~ 165 (352)
T cd06174 159 LAILGLL 165 (352)
T ss_pred HHHHHHH
Confidence 4444333
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=96.79 Aligned_cols=132 Identities=11% Similarity=-0.051 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHh-hcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 202 NGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 202 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
+......+.+-+ +.+++..+ .......+...++++..|++.||+|.|+.+..+..+..+..+..++......
T Consensus 51 ~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~----- 125 (462)
T PRK15034 51 MLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPN----- 125 (462)
T ss_pred HHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccC-----
Confidence 333444444444 57887766 4555567778888899999999999999998888887777766554211000
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANF 345 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 345 (389)
+ .....++...+.+.+ .+..+.....+++.+|+++||++.|+....+++|..+++.+.+.
T Consensus 126 ~-----s~~~lli~r~l~Gig--g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 126 T-----PFGIFIVIALLCGFA--GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred C-----CHHHHHHHHHHHHHH--HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0 011111111111111 22345556888999999999999999977777777666665554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.3e-10 Score=101.99 Aligned_cols=141 Identities=20% Similarity=0.142 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
.......++..++.++.|+++||+|||+.+..+..+..++..+....... ......+....+.+.+.
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~- 141 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA------------LSVEMLIVGRVLLGIGV- 141 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc------------cchHHHHHHHHHHHhhh-
Confidence 55666788899999999999999999999988888877776666432110 00012222222222222
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHh---HHHhh-hccchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA---NFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~---g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
....+....++.|.+|+++|+.+.++.+....+|..+++.+. +...+ .++...+.+ .++..+...+..++++|+
T Consensus 142 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~-~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 142 GIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL-QLIPAGLLFLGLFFLPES 219 (481)
T ss_pred hHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH-HHHHHHHHHHHHhcCCCC
Confidence 233455668999999999999999999999999999999998 54434 344445555 333333444444555554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-09 Score=98.38 Aligned_cols=150 Identities=12% Similarity=0.110 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc
Q 016431 202 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 279 (389)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
.....+.+.+.++.|.+..+ .......+...++.++.|+++||+|||+.+..+..+..++.++.+...
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---------- 105 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS---------- 105 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh----------
Confidence 34556677777888887666 444444566778889999999999999999888877777666654321
Q ss_pred cchhHHHHHHHHHh-hheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHH
Q 016431 280 RFYSILGILSLVGL-VTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 357 (389)
Q Consensus 280 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~ 357 (389)
......... .+.+.+.+.. .+.....+.+.+| ++|+++.|+.+....+|..++|.+.+.+.+ .++...+++
T Consensus 106 -----~~~~l~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~ 178 (455)
T TIGR00892 106 -----NVIELYLTAGFITGLGLAFN-FQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLI 178 (455)
T ss_pred -----hHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 011111111 1112222222 2333466777776 679999999999999999999999999888 566667777
Q ss_pred HHHHHHHHHHH
Q 016431 358 YGIVCAFTVAF 368 (389)
Q Consensus 358 ~~~~~~~~~~~ 368 (389)
.+++..+..+.
T Consensus 179 ~~~~~~~~~v~ 189 (455)
T TIGR00892 179 LGGLLLHCCVC 189 (455)
T ss_pred HHHHHHHHHHH
Confidence 77665544433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-10 Score=103.33 Aligned_cols=140 Identities=14% Similarity=-0.042 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
.......++..++.+..|++.||+|+|+.+..+.++..++.++....... .....++.-++.+ ...
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~r~~~G-~~~ 145 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG-------------GIALVVFCRVIQG-LAQ 145 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc-------------CchHHHHHHHHHH-Hhc
Confidence 45566678899999999999999999999988887777666554322110 0111122222222 223
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh--ccchhhHHHHHHHHHHHHHHHhhccc
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW--SSGGTFLIYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
....|....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+. ++...+.+.++...+..++.+...++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 344566678999999999999999999999999999999999998874 56667777766655554444444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=100.02 Aligned_cols=248 Identities=16% Similarity=0.128 Sum_probs=156.9
Q ss_pred hhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc-------------------c-------------------------
Q 016431 4 AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-------------------D------------------------- 39 (389)
Q Consensus 4 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------~------------------------- 39 (389)
..+..+..-|.-|-|.+-+|.++++++++++++-+ +
T Consensus 149 i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 228 (735)
T KOG3626|consen 149 IIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKR 228 (735)
T ss_pred hHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccc
Confidence 44566677777788888899999999999988730 0
Q ss_pred -------hh-HHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc------------
Q 016431 40 -------SS-FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------ 99 (389)
Q Consensus 40 -------~~-~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~------------ 99 (389)
++ .++++.++.|+|....++...+|+-|...+++-+..+|+......+|+++|.+++++.
T Consensus 229 ~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~ 308 (735)
T KOG3626|consen 229 EKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPI 308 (735)
T ss_pred cccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCC
Confidence 11 5677999999999999999999999999999999999999999999999999999876
Q ss_pred -----------chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccc
Q 016431 100 -----------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSR 168 (389)
Q Consensus 100 -----------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (389)
-|..-|++.+.+.++..+.++++|.+.+.. +++.++ ++.+..+.+.+ ..+......++.+
T Consensus 309 ~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~---~~~~~~----~~~~~~k~~~~--~~~~~~~~~~~ik 379 (735)
T KOG3626|consen 309 GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS---QKRKRA----RDLHVLKTESG--GAKSDKTFGKKIK 379 (735)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc---cccchh----hhhcccccccc--cccCCcchhhhHH
Confidence 266667777777777777777777654311 110000 00000000000 0000000000111
Q ss_pred cccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc---HHHHHHHHHHHHHHHHHHHHHhh
Q 016431 169 RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN---VATFGLGVVQVVATGVNTWLMDK 244 (389)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~ 244 (389)
+.....+.+++++. .+...+........+.....|+|.++++ ++.++.. +......-+..+|..++|++++|
T Consensus 380 dfp~s~~~ll~N~i----f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikk 455 (735)
T KOG3626|consen 380 DFPKSIKRLLSNPI----FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKK 455 (735)
T ss_pred HHHHHHHHHhcCch----HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeee
Confidence 22334455555553 4444444555555567788888888874 6776555 22233345556888999999998
Q ss_pred hc--hhHHHHHHhHHHHHHHHH
Q 016431 245 AG--RRLLLLISSSGMAASFFL 264 (389)
Q Consensus 245 ~~--~~~~~~~~~~~~~~~~~~ 264 (389)
+. .|.......+...++++.
T Consensus 456 fkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 456 FKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred ecccHHHHHHHHHHHHHHHHHH
Confidence 75 344444444444444433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=8e-10 Score=83.27 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeeccccc
Q 016431 227 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGA 306 (389)
Q Consensus 227 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (389)
..++.+++.+..+++.||++||+.+..+.....++....... . ..............+ .....+
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~g~~-~~~~~~ 70 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---S------------NITVLIIARFLQGFG-AAFALV 70 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---c------------cHHHHHHHHHHHHHH-HHHHHH
Confidence 456788899999999999999999888877777666555431 0 011111111111111 122345
Q ss_pred chhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh-ccchhhHHHHHHHHHHHHHHHhhccc
Q 016431 307 IPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW-SSGGTFLIYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
....+..|..|+++|++..++.+....++..++|.+.+.+.+. +....+.+.+....+..+......||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 5668899999999999999999999999999999999999884 44455666665555555555544443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=97.78 Aligned_cols=181 Identities=16% Similarity=0.087 Sum_probs=116.6
Q ss_pred hhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHh
Q 016431 178 KRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISS 255 (389)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 255 (389)
++++.++.+...-.+..+...........+. .+..-++.. .......+..++.++.+|.++||++||++++.+-
T Consensus 7 lr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv----~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~ 82 (524)
T PF05977_consen 7 LRNRNFRRLWIAQLISNLGDWMQTVALAWLV----TQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQ 82 (524)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 5567777777766666665544333333332 222222222 3344456777888999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHH
Q 016431 256 SGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLV 335 (389)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 335 (389)
++..+....+.+....+.. . ...+..+.+..........|...+.+.|++|+++...++++.+...++.
T Consensus 83 ~~~~~~~~~L~~l~~~~~~----------~-~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~nia 151 (524)
T PF05977_consen 83 LLRALVALLLAVLAFFGLL----------S-PWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIA 151 (524)
T ss_pred HHHHHHHHHHHHHHHhCcC----------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Confidence 8877766666554333221 1 1222222222222234446778899999999999999999999999999
Q ss_pred HHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcc
Q 016431 336 SWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVP 374 (389)
Q Consensus 336 ~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (389)
..+||.++|.+.. .+....+.+-++. .+..+......+
T Consensus 152 r~iGPalgG~Lva~~G~~~~f~inals-fl~~i~~l~~~~ 190 (524)
T PF05977_consen 152 RIIGPALGGILVAFFGAAAAFLINALS-FLISILALLRWK 190 (524)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcc
Confidence 9999999999988 5555555554443 333333333333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-09 Score=108.16 Aligned_cols=188 Identities=15% Similarity=0.064 Sum_probs=108.4
Q ss_pred HHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc---HHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 016431 176 ELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRLLL 251 (389)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 251 (389)
.+++++.++++++..++..+........+..+..+...+ .+.+... .......+..++.+++.|+++||++||+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 355666666666665555554332222333333322222 1221112 334445677788999999999999999976
Q ss_pred HHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHH
Q 016431 252 LISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLA 331 (389)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 331 (389)
........+............ ..+..++.. ++.........|...+++.+.+|+++++.++|+.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~------------s~~~l~~~~-~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~ 152 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGFHLN------------SVPLLFAAL-FLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAG 152 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHH-HHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHH
Confidence 442222222211111111101 111222222 2222223445677789999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 332 NWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 332 ~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
..+|..+||.+.|++.+..++..+++..++..+.+.+....++++
T Consensus 153 ~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 153 TFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999999885554444444444444444455555544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-09 Score=93.77 Aligned_cols=133 Identities=14% Similarity=-0.006 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc
Q 016431 202 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 279 (389)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
.......|.+.++.+.+..+ .......++..++++..+++.||+|||+.+..+..+..++..+........
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~------- 92 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIM------- 92 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence 34445667777778887666 556667889999999999999999999999999988888876654221111
Q ss_pred cchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHh
Q 016431 280 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 347 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 347 (389)
.....+...++.+.+.+. ..+....+..+..|++++++..++.+..+.+|..++|.+.+.+.
T Consensus 93 -----~~~~~l~~~~l~G~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 93 -----NYTLFLVGLFILTAGLGF-LETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred -----cHHHHHHHHHHHHhhHHH-HHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222222222222 22333477778889999999999999999999999999998775
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-09 Score=94.92 Aligned_cols=132 Identities=14% Similarity=0.014 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........|.+.++.+.+..+ .......++..++.+..|++.||+|||+.+..+..+.+++.+..+...
T Consensus 25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~--------- 95 (393)
T PRK09705 25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP--------- 95 (393)
T ss_pred hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc---------
Confidence 345667778888888887766 555556788889999999999999999999999999999988877531
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
.....+....+.+.+.+ ...+.....+.|.+| ++|+.++|........|..+++.+.+.+.++
T Consensus 96 ------~~~~ll~~r~l~Gig~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~ 158 (393)
T PRK09705 96 ------QSALLLSSALLGGVGIG-IIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH 158 (393)
T ss_pred ------chHHHHHHHHHHHhHHH-HHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122222222222222 223344467788887 7799999999999999999999999988774
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-09 Score=96.62 Aligned_cols=146 Identities=14% Similarity=0.158 Sum_probs=92.0
Q ss_pred ChhHHHHHHHHHH-hhcCCCCccH--HHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHhHHHHHHHHHHHHHHhhcccc
Q 016431 200 GINGVLFYSSNIF-ANAGISSSNV--ATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVAFFLEGFV 275 (389)
Q Consensus 200 ~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (389)
.++....+.+.++ ++.|.+..+. .............+++|+++|| +|||+.+..+..+..++..++.+.. .
T Consensus 36 ~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~---~-- 110 (500)
T PRK09584 36 GYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG---H-- 110 (500)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc---c--
Confidence 3455555666665 5678876552 2222233333445689999999 5999999999888888766665320 0
Q ss_pred cCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccch--hhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccc
Q 016431 276 SEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNI--KSLAGSVATLANWLVSWIVTMTANFLLD-WSSG 352 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~ 352 (389)
.......+..+...+. ....+...++..|.+|+++ ++.+.++.+...++|..++|.+.|++.+ .++.
T Consensus 111 ---------~~~~l~~~~~l~gig~-g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~ 180 (500)
T PRK09584 111 ---------DAGIVYMGMATIAVGN-GLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWS 180 (500)
T ss_pred ---------cHHHHHHHHHHHHHhh-hcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 0011112222222222 2233555588899998653 4567888899999999999999999988 5555
Q ss_pred hhhHHHHH
Q 016431 353 GTFLIYGI 360 (389)
Q Consensus 353 ~~~~~~~~ 360 (389)
..|.+.++
T Consensus 181 ~~F~i~~i 188 (500)
T PRK09584 181 VAFALSVV 188 (500)
T ss_pred HHHHHHHH
Confidence 55655543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.6e-09 Score=90.46 Aligned_cols=160 Identities=16% Similarity=0.073 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
.+.+....+.+-++.++++.+ ....+..+.+.+.++..|.+.||+|.|+....+.++..+-.+.+.+.....++
T Consensus 30 W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~---- 105 (417)
T COG2223 30 WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPST---- 105 (417)
T ss_pred HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCch----
Confidence 444555555666788998888 55666788899999999999999999999999888888777776654322211
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hc---cchh
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS---SGGT 354 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~---~~~~ 354 (389)
.....+++. .+.+.+...+...++++.+|+|++|.++|++. .+++|..+...+.+.+.. .+ .+..
T Consensus 106 -------~~ll~~gll---~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~ 174 (417)
T COG2223 106 -------WQLLVIGLL---LGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNV 174 (417)
T ss_pred -------HHHHHHHHH---HhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 112222222 22233444555688999999999999999999 899999998888888877 33 4455
Q ss_pred hHHHHHHHHHHHHHHHhhccc
Q 016431 355 FLIYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~ 375 (389)
..++....++..+..++..++
T Consensus 175 ~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 175 AGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 555665555656666665543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-09 Score=94.27 Aligned_cols=155 Identities=17% Similarity=0.048 Sum_probs=94.6
Q ss_pred HHHHHH-HhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HhHHHHHHHHHHHHHHhhcccccCCccc
Q 016431 206 FYSSNI-FANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLI-SSSGMAASFFLVSVAFFLEGFVSEDSRF 281 (389)
Q Consensus 206 ~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (389)
...+.+ .++.|.+..+ .......+...+..+..|+++||+|||+.+.. +.....++..+....
T Consensus 18 ~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~------------- 84 (375)
T TIGR00899 18 PTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN------------- 84 (375)
T ss_pred hHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc-------------
Confidence 334443 4567877655 44455567788889999999999998887554 333333443333321
Q ss_pred hhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhh--hhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHH
Q 016431 282 YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLA--GSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIY 358 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~ 358 (389)
......+....+. ........|....+..|..|++.|+.+ .+.......+|..++|.+.+.+.+ .++...+++.
T Consensus 85 --~~~~~l~~~~~~~-g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~ 161 (375)
T TIGR00899 85 --RNYFLLLVLGVLL-SSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA 161 (375)
T ss_pred --chHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence 0011111111111 122223456666777788777766644 577788889999999999999987 5555667766
Q ss_pred HHHHHHHHHHHHhhcccC
Q 016431 359 GIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~ 376 (389)
+....+..++..+..||.
T Consensus 162 ~~~~~~~~~~~~~~~~~~ 179 (375)
T TIGR00899 162 ALAFVLCGVLVWLFLPSY 179 (375)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 666555555555556654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.6e-09 Score=94.66 Aligned_cols=151 Identities=15% Similarity=0.035 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
.......++.+++.++.|+++||+|||+.+..+..+..++.+.............. .+ + ......+..-++.+.+ .
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~-~~-~-~~~~~l~~~R~l~G~~-~ 134 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGP-DN-T-GYVPEFVIYRIIGGIG-V 134 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccc-cc-h-hHHHHHHHHHHHHhhh-H
Confidence 55666788999999999999999999999999888877776655432110000000 00 0 1111122222222222 2
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh---------hccchhhHHHHHHHHHHHHHHHhh
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD---------WSSGGTFLIYGIVCAFTVAFVSLW 372 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 372 (389)
.+..+...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+.. .++...+++.++...+. .+..++
T Consensus 135 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~~~~ 213 (479)
T PRK10077 135 GLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF-LMLLYF 213 (479)
T ss_pred hHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH-HHHHHc
Confidence 33455666899999999999999999999999999988877655431 34444555544444443 344556
Q ss_pred cccCC
Q 016431 373 VPETK 377 (389)
Q Consensus 373 ~~~~~ 377 (389)
+||+.
T Consensus 214 l~~s~ 218 (479)
T PRK10077 214 VPETP 218 (479)
T ss_pred CCCCc
Confidence 67653
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.6e-09 Score=93.22 Aligned_cols=152 Identities=16% Similarity=0.074 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCccHHHHH----H----HHHHHHHHHHHHHHHhhhchhHHHHHHhHHH
Q 016431 187 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFG----L----GVVQVVATGVNTWLMDKAGRRLLLLISSSGM 258 (389)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 258 (389)
.....+..+..+.-...+....|.+.++.+.++.+..... . .+...++.++.|++.||+|||+.+..+..+.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~ 96 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM 96 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 4444445555555566777888888888877665521111 1 1222467889999999999999999999888
Q ss_pred HHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHH
Q 016431 259 AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWI 338 (389)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 338 (389)
.++..+.++...... .........++.-.+.+.+.+ ...+....+..|.+|+++|+...++.+...+++..+
T Consensus 97 ~~~~~l~~~~~~~~~-------~~~~~~~~l~~~R~l~G~~~g-~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 97 ASGTLLIAFVPGYAT-------IGLAAPLLVLLGRLLQGFSAG-VELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF 168 (434)
T ss_pred HHHHHHHHhCCcHHH-------HHHHHHHHHHHHHHHhhcccc-ccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH
Confidence 887777664211000 000001112233333333332 223444589999999999999999999988888888
Q ss_pred HHHHhHHH
Q 016431 339 VTMTANFL 346 (389)
Q Consensus 339 ~~~~~g~l 346 (389)
++.+.+.+
T Consensus 169 g~~~g~~l 176 (434)
T PRK15075 169 AALLGYLL 176 (434)
T ss_pred HHHHHHHH
Confidence 88777765
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=92.73 Aligned_cols=145 Identities=15% Similarity=-0.016 Sum_probs=88.3
Q ss_pred HHHhhcChhHHHHHHHHHHhhcC---CCCcc-----HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHH
Q 016431 194 VLQQLSGINGVLFYSSNIFANAG---ISSSN-----VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 265 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 265 (389)
..........+....+.+.++.+ .+..+ .......++..+++++.|++.||+|||+.+..+..+..++.++.
T Consensus 31 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~ 110 (432)
T PRK10406 31 NLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVI 110 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 33333334455666666666653 22222 11222345555899999999999999999999998888887776
Q ss_pred HHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHH
Q 016431 266 SVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANF 345 (389)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 345 (389)
++...... ............-.+.+.+ ..+..+...+++.|..|+++|+...++.......|..+++.+...
T Consensus 111 ~~~~~~~~-------~~~~~~~~l~~~R~l~G~g-~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~ 182 (432)
T PRK10406 111 ACLPGYET-------IGTWAPALLLLARLFQGLS-VGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVV 182 (432)
T ss_pred hhcCCchh-------HHHHHHHHHHHHHHHHHhh-hhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64211000 0001111222222222222 233456667999999999999999998887777777777766544
Q ss_pred H
Q 016431 346 L 346 (389)
Q Consensus 346 l 346 (389)
+
T Consensus 183 ~ 183 (432)
T PRK10406 183 L 183 (432)
T ss_pred H
Confidence 3
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=4e-10 Score=104.46 Aligned_cols=125 Identities=18% Similarity=0.136 Sum_probs=103.9
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccch--hHHHHHHHHhhhcccccccccceeeeeccCcccccchhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS--SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 79 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 79 (389)
.+.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+....+..|.+|++.|+++++
T Consensus 370 ~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 449 (505)
T TIGR00898 370 PAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVG 449 (505)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHh
Confidence 467788999999999999999999999998888877654 445555667777777777888899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcccc--chHHHHHhhhHHHHHHHHHHhcccCCc
Q 016431 80 VNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPESP 126 (389)
Q Consensus 80 ~~~~~~~lG~~l~~~i~~~~--~wr~~f~~~~~~~~~~~~~~~~~~e~p 126 (389)
+.+....+|.+++|.+.+.. ++..++++.+...++..+..+++||+.
T Consensus 450 ~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 450 VCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999998832 566778777777777777777889874
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=93.30 Aligned_cols=116 Identities=12% Similarity=-0.033 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
.......++.+++.++.|++.||+|||+.+..+.++..++..+...... . .+. ......+....+.+.+.
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~---~----~~~--~~~~~~~~~r~l~G~~~- 129 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG---S----SPK--SVMATLCFWRFWLGVGI- 129 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC---c----ccc--hHHHHHHHHHHHHHHHH-
Confidence 4555667888999999999999999999998888877777665553210 0 000 00112223332222222
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHh
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 347 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 347 (389)
....+....+..|.+|++.|+++.++.+....+|..+++.+...+.
T Consensus 130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334556699999999999999999999999999999998876553
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=93.31 Aligned_cols=164 Identities=10% Similarity=0.042 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHhhcCCCCccHHHHHH-HHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc
Q 016431 201 INGVLFYSSNIFANAGISSSNVATFGL-GVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 279 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
.+.+..+.+.+.++.|+++.+...... +.......+..|++.||+|+|+++.++.++..++.++.++.....-
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i------ 116 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI------ 116 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc------
Confidence 456667778888888888776332221 2222345567899999999999999999999999888775311100
Q ss_pred cchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHH
Q 016431 280 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYG 359 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 359 (389)
....+...+...+.+.+ .....+.....+.+.+| ++||.+.|+......+|+++.+.+...+...+....+++.+
T Consensus 117 ---~~s~~~l~l~r~l~G~G-~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~ 191 (591)
T PTZ00207 117 ---EGSVVRLSVYNGLMTLG-CMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLM 191 (591)
T ss_pred ---cCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 00111111111111111 11122333456677886 67999999999999999987555555444434445666777
Q ss_pred HHHHHHHHHHHhhccc
Q 016431 360 IVCAFTVAFVSLWVPE 375 (389)
Q Consensus 360 ~~~~~~~~~~~~~~~~ 375 (389)
++..+.+++...+++.
T Consensus 192 vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 192 SFALVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHHHHhheeC
Confidence 7766666666655543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=104.38 Aligned_cols=114 Identities=14% Similarity=0.056 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeec
Q 016431 223 ATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSL 302 (389)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (389)
......+..++++++.|+++||+|||+.+..+.++..+..++..+.....+ ....++..++.+ ....
T Consensus 52 ~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~r~l~G-~~~~ 118 (1146)
T PRK08633 52 VNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGW------------FWLAFAVTFLLG-AQSA 118 (1146)
T ss_pred HHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHcc------------HHHHHHHHHHHH-HHHH
Confidence 344556778899999999999999999988877665555444433221111 112222222222 2223
Q ss_pred ccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 303 GVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
...+...+++.|.+|+++|+.++|+......+|..++|.+.+++.+.
T Consensus 119 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 119 IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566678999999999999999999999999999999999998764
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.8e-09 Score=95.31 Aligned_cols=151 Identities=19% Similarity=0.206 Sum_probs=99.6
Q ss_pred HHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchh
Q 016431 205 LFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYS 283 (389)
Q Consensus 205 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (389)
....+++..+.|-++.. +......+...+..++.|+++|.+|||...+.+.++..++.++.+-.
T Consensus 64 a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA--------------- 128 (599)
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC---------------
Confidence 34456667777766555 66666678888999999999999999999999999999988877632
Q ss_pred HHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHH
Q 016431 284 ILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVC 362 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~ 362 (389)
.+....+.+..+.+.+ .+...+....++|..|.+.|..+.++.....-....++|.+...+.. .++.+.+++..+..
T Consensus 129 ~~~~~~iag~~l~Gvg--aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~ 206 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVG--AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS 206 (599)
T ss_pred CcHHHHHHHHHHHHHh--hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence 1112222333333332 33334445678999999999888777666555555567777766554 45566666666655
Q ss_pred HHHHHHHHhh
Q 016431 363 AFTVAFVSLW 372 (389)
Q Consensus 363 ~~~~~~~~~~ 372 (389)
.+..++..++
T Consensus 207 ~i~~vl~~~f 216 (599)
T PF06609_consen 207 GIALVLIFFF 216 (599)
T ss_pred HHHHHHHHHH
Confidence 5544444333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-08 Score=87.69 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHhhcCCCCcc---HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 202 NGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
....+..|++.++.|++..+ ........+..+..+.+|+++||+|.|+.+..+.+...+...+.++..
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--------- 113 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--------- 113 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH---------
Confidence 45566677777788988766 556666788899999999999999999999999888888887777531
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccch--hhH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGG--TFL 356 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~--~~~ 356 (389)
......+.-++++.+-+ ... ....++.+.+|+++|++++|+.+....+|.++++++.+.+...++.. ...
T Consensus 114 ------Sl~~L~i~R~llGvaEA-~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln 185 (511)
T TIGR00806 114 ------SVWHMQLMEVFYSVTMA-ARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLN 185 (511)
T ss_pred ------HHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 11122222222222222 223 55688999999999999999999999999999999999955543322 222
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 016431 357 IYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~ 375 (389)
.+.....+.+++..+++|.
T Consensus 186 ~Isl~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 186 IISLVFMTFSVFLALFLKR 204 (511)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 3333344444555566663
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-09 Score=99.16 Aligned_cols=124 Identities=11% Similarity=0.178 Sum_probs=92.3
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHh---c-cchhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---S-KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
++.++.|+++||+||||++..+.++..++.+.... . ++.+.+++..++.|++.+...+...+++.|.+|.+.|+..
T Consensus 301 i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg 380 (438)
T PRK09952 301 LTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSG 380 (438)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHH
Confidence 45678899999999999999887766655443322 2 2344445566777888887788888999999999999888
Q ss_pred hhhhH-HHHHHHHHHHHHhcccc------chHHHHHhhhHHHHHHHHHHhcccCC
Q 016431 78 GSVNQ-LSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPES 125 (389)
Q Consensus 78 ~~~~~-~~~~lG~~l~~~i~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~ 125 (389)
.++.+ .+..+|..++|.+.+++ +|+..+...++..++..+..+.++|+
T Consensus 381 ~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 381 AGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 88854 44558888888888776 48888887777777776666667765
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=91.17 Aligned_cols=134 Identities=13% Similarity=-0.027 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........|.+.++.+.++.+ .......++..++.+..|++.||+|||+.+..+..+..++.++........
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~------ 115 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM------ 115 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC------
Confidence 456667778887788887666 556667889999999999999999999999999988888876643211111
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHh
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 347 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 347 (389)
.....+....+.+.+.+ ...+....++.|..|+++|....+..+....+|..++|.+.+.+.
T Consensus 116 ------~~~~ll~~r~l~G~g~g-~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 116 ------NYTLFLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred ------CHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122223333233322 223344466778777776667899999999999999999887654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=91.20 Aligned_cols=168 Identities=20% Similarity=0.208 Sum_probs=108.2
Q ss_pred HHhhcChhHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHhhh-----chhH-HHHHHhHHHHHHHHHHHHH
Q 016431 195 LQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKA-----GRRL-LLLISSSGMAASFFLVSVA 268 (389)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~-~~~~~~~~~~~~~~~~~~~ 268 (389)
+.+...+.....-+|.++++.|++..+.........-.+..++.|+++||+ |||| .+..+....+++...+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 9 FASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC 88 (402)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 334444556677788889999998877433332222368899999999999 7765 6777676766666655432
Q ss_pred HhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 269 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
.. . .. ...+.........+.....+...+++.|..|+++|+++.++......+|..+++.+.+.+.+
T Consensus 89 ~~-------~-----~~-~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~ 155 (402)
T PRK11902 89 PP-------H-----AA-LWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD 155 (402)
T ss_pred Cc-------c-----ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 00 0 00 11111111111222334456667999999999999999999999999999999999998887
Q ss_pred -h-ccchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 349 -W-SSGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 349 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
. ++...+++.+++..+.. +.....+|+
T Consensus 156 ~~~gw~~~f~i~a~~~l~~~-l~~~~~~e~ 184 (402)
T PRK11902 156 RVLGWGNTYLLMAGLMLAGA-LTTLWAPEP 184 (402)
T ss_pred cccCHHHHHHHHHHHHHHHH-HHHHhcCCC
Confidence 3 55556666666554433 334455554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.4e-09 Score=91.11 Aligned_cols=160 Identities=15% Similarity=0.067 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhhcCCCCccHHHHHH-HHHHHHHHHHHHHHHhhh-----chhHHH-HHHhHHHHHHHHHHHHHHhhcccc
Q 016431 203 GVLFYSSNIFANAGISSSNVATFGL-GVVQVVATGVNTWLMDKA-----GRRLLL-LISSSGMAASFFLVSVAFFLEGFV 275 (389)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 275 (389)
......|.+.++.|.+..+...... .+... ..++.|++.||+ |||+.. ..+.....+....+.+. .
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~---~--- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL---V--- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC---C---
Confidence 4455667778888888776333221 23333 388999999998 788864 45555555544444321 0
Q ss_pred cCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hc----
Q 016431 276 SEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS---- 350 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~---- 350 (389)
+.. ....+...............+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+ .+
T Consensus 79 -~~~------~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~ 151 (356)
T TIGR00901 79 -PST------DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTG 151 (356)
T ss_pred -cch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 000 011111111111122223345556889999999999999999999999999999999998877 33
Q ss_pred ----cchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 351 ----SGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 351 ----~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
+...+++.++...+......+..||+
T Consensus 152 ~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 152 LITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33445555544444333333334554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-08 Score=80.27 Aligned_cols=167 Identities=14% Similarity=0.024 Sum_probs=107.2
Q ss_pred HhhcChhHHHHHHHHHHhhcCCCCccH--HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcc
Q 016431 196 QQLSGINGVLFYSSNIFANAGISSSNV--ATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEG 273 (389)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (389)
......+.+..|.|.+.++.++++.+. ......++..+ .+..|.+.|++|++..+.++.....+++..+.......-
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 333446778889999999999988883 33444566655 588899999999999999999999999887765432211
Q ss_pred cccCCccchhHHHHHHHHHhhheeeeeeccc-ccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccc
Q 016431 274 FVSEDSRFYSILGILSLVGLVTVVISFSLGV-GAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSG 352 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 352 (389)
. ..+... .....+..+.+.++ .........+.+|. +||++.|+.-....+++++-..+...+.+.+..
T Consensus 92 ~---------~~~~~~-~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~ 160 (250)
T PF06813_consen 92 P---------SLPVWL-MCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS 160 (250)
T ss_pred C---------ccchHH-HHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence 0 011111 12222222233332 22223445567874 799999999999999999888888777775444
Q ss_pred hhhHHHHHHHHHHHHHHHhhcc
Q 016431 353 GTFLIYGIVCAFTVAFVSLWVP 374 (389)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~ 374 (389)
....+.+....+.+++...+++
T Consensus 161 ~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 161 SFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhhee
Confidence 4444445444444444444443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=90.02 Aligned_cols=188 Identities=13% Similarity=0.074 Sum_probs=109.2
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHh----hhchhHHHHHH-hHHHHH
Q 016431 188 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMD----KAGRRLLLLIS-SSGMAA 260 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~ 260 (389)
.........++. +.....+.+.+.++.|.+... .......+.+++..++.|+++| |+|||+..+.. .....+
T Consensus 8 ~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~ 86 (477)
T TIGR01301 8 RVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAF 86 (477)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHH
Confidence 333333333333 445555666677888886655 5556667889999999999999 59999988765 444444
Q ss_pred HHHHHHHHHhhcccccCC--ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchh--hhhhhHHHHHHHHHH
Q 016431 261 SFFLVSVAFFLEGFVSED--SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIK--SLAGSVATLANWLVS 336 (389)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~ 336 (389)
++.++...........++ ...........+.++.+.....+....| ..+++.|..|+++| +.+++..+....+|+
T Consensus 87 ~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p-~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ 165 (477)
T TIGR01301 87 AVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGP-CRAFLADLTGGDARRTRIANAYFSFFMAIGN 165 (477)
T ss_pred HHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence 444444321111000000 0000111122222322222222323333 35899999998865 578999999999999
Q ss_pred HHHHHHhHHHh--hh--------------ccchhhHHHHHHHHHHHHHHHhhcccCC
Q 016431 337 WIVTMTANFLL--DW--------------SSGGTFLIYGIVCAFTVAFVSLWVPETK 377 (389)
Q Consensus 337 ~~~~~~~g~l~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
.+++.+.+... +. +....|++.+++..+...+..+..+|+.
T Consensus 166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 99999988652 11 2223455555555555566666667653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-09 Score=90.40 Aligned_cols=143 Identities=14% Similarity=0.075 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
.......+.+++.+++.|.+.||+|+|..++++..++..+.+++++.- .....+++-.+-+.+.
T Consensus 110 ~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~---------------sy~~l~vAR~LQgvgs- 173 (464)
T KOG3764|consen 110 LLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN---------------SYPMLFVARSLQGVGS- 173 (464)
T ss_pred HHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc---------------hhHHHHHHHHHhhhhH-
Confidence 555566899999999999999999999999999999999999888631 1112223322222222
Q ss_pred cccccchhhhhccccccch-hhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCCCC
Q 016431 302 LGVGAIPWVIMSEILPVNI-KSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGR 379 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (389)
........+++++.+|++. |++++|+.-.+..+|-.++|.++|.++| .|...+|.++++++++-..+..+.++.++.+
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 2223344589999999876 6999999999999999999999999999 7888999999999998888777766554443
Q ss_pred C
Q 016431 380 S 380 (389)
Q Consensus 380 ~ 380 (389)
+
T Consensus 254 ~ 254 (464)
T KOG3764|consen 254 P 254 (464)
T ss_pred c
Confidence 3
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-08 Score=91.50 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHhhh-----chhHH-HHHHhHHHHHHHHHHHHHHhhccc
Q 016431 201 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKA-----GRRLL-LLISSSGMAASFFLVSVAFFLEGF 274 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 274 (389)
........|.++++.|.+..+...........++.++.++++||+ |||+. +..+.+...++...++....
T Consensus 28 ~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~---- 103 (491)
T PRK11010 28 LALTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEP---- 103 (491)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCC----
Confidence 345555667777777876655333322222236889999999999 88875 55666555555555543210
Q ss_pred ccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-h-ccc
Q 016431 275 VSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-W-SSG 352 (389)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~-~~~ 352 (389)
.. ..........+. ..+.....+...++..|.+|+++|+.+.++......+|..+++.+.+.+.+ . ++.
T Consensus 104 ---~~-----~l~~l~~~~~l~-~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr 174 (491)
T PRK11010 104 ---GT-----QLRWLAALAVVI-AFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQ 174 (491)
T ss_pred ---cc-----hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 00 001111111111 112223445556899999999999999999999999999999999999888 3 566
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccC
Q 016431 353 GTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
..+++.++...+. .+..+..||+
T Consensus 175 ~~f~i~a~l~ll~-~l~~~~~~e~ 197 (491)
T PRK11010 175 GMYWLMAALLIPC-IIATLLAPEP 197 (491)
T ss_pred HHHHHHHHHHHHH-HHHHHhcCCC
Confidence 6666666655444 3333345654
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-07 Score=80.64 Aligned_cols=327 Identities=16% Similarity=0.026 Sum_probs=164.6
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc--------c----chhHH---HHHHHHhh-hcccccccccceee
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--------K----DSSFL---FMGRLLEG-FGVGVISYTVPVYI 65 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~----~~~~~---~~~r~l~G-~~~~~~~~~~~~~i 65 (389)
+.++..|.+.||..|+++...+.+..-++..+.+.. + +.+.. ++.-.+.| +..=.......+.=
T Consensus 53 ~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavE 132 (432)
T PF06963_consen 53 LFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVE 132 (432)
T ss_pred HhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 456788999999999999887766554433333221 1 11111 11111222 11111122223333
Q ss_pred eeccC------cccccchhhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHH-Hhc----ccCCchhhH
Q 016431 66 AEIAP------QNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFF----IPESPRWLA 130 (389)
Q Consensus 66 ~~~~~------~~~r~~~~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~-~~~----~~e~p~~~~ 130 (389)
.||.. ++.+.+..+...-.--+..+++|++.+.+ +.+....+.+...++.++. .++ ....|. +.
T Consensus 133 RDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~ 211 (432)
T PF06963_consen 133 RDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LA 211 (432)
T ss_pred cchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hc
Confidence 45542 33345555555555566778888888777 5555554444444443222 111 122332 22
Q ss_pred hcCChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHH
Q 016431 131 KMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSN 210 (389)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (389)
.+++.++.+...+.... ..+.......+...+.-++....|+..++++.+...+-...++.. .. .+...+..
T Consensus 212 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VL----sf~~lmt~ 283 (432)
T PF06963_consen 212 VKKRSSESESSSDEESS---SESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VL----SFGGLMTA 283 (432)
T ss_pred CCCCCcccccccccccc---ccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-Hh----cCcHHHHH
Confidence 22221111100000000 000000011111111122234556666666654443333333332 21 22334445
Q ss_pred HHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHH
Q 016431 211 IFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGIL 288 (389)
Q Consensus 211 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (389)
+..+.|+++.. ..-....+.++.++++..++.+|+|..+.-..+......+..+............ .......
T Consensus 284 yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~-----~~~s~~~ 358 (432)
T PF06963_consen 284 YLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF-----SSISAYL 358 (432)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc-----hhhHHHH
Confidence 55666887665 4555667889999999999999999988877777666655555444443332200 0112222
Q ss_pred HHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHh
Q 016431 289 SLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 343 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 343 (389)
.+.+....-.+. -++--....+..|..|+++||..+|+-+..+++...+.-.+.
T Consensus 359 l~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 359 LLGGIALSRIGL-WSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred HHHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 233333322222 222233347888999999999999999999988876655544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=95.97 Aligned_cols=162 Identities=16% Similarity=0.079 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHH
Q 016431 186 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 263 (389)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 263 (389)
+++...+..+.............+.+.++.+++..+ .......++..++.++.+++.||.+||+.+..+.++.+++.+
T Consensus 34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l 113 (633)
T TIGR00805 34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF 113 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence 333344344443333344445556666677777665 556667888999999999999999999999999999999988
Q ss_pred HHHHHHhhcccccCC----------------------------------ccch--hHHHHHHHHHhhheeeeeecccccc
Q 016431 264 LVSVAFFLEGFVSED----------------------------------SRFY--SILGILSLVGLVTVVISFSLGVGAI 307 (389)
Q Consensus 264 ~~~~~~~~~~~~~~~----------------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (389)
+.++........... .... .......+++-++.+.+ .....++
T Consensus 114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG-~~~~~~~ 192 (633)
T TIGR00805 114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIG-ATPIFPL 192 (633)
T ss_pred HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhcc-CCcchhc
Confidence 877653221100000 0000 00111222333333332 3344566
Q ss_pred hhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 308 PWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
..+++.|.+|+++|+...|+.+....+|..+|+.+.+.+.+
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 67999999999999999999999999999999999998875
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.9e-08 Score=86.23 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHh-hcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 202 NGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 202 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
.....+.+.+.. +.|.+..+ .......+...++++..|+++||+|||+.+..+.....+.............
T Consensus 19 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~----- 93 (396)
T TIGR00882 19 SAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPL----- 93 (396)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhH-----
Confidence 344445555544 56777665 5666778999999999999999999999988766555443332211100000
Q ss_pred ccchhHHHH-HHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHH
Q 016431 279 SRFYSILGI-LSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLI 357 (389)
Q Consensus 279 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~ 357 (389)
...... .............. ...+....+..|..+ .++...|.......+|..++|.+.|.+.+.++...+++
T Consensus 94 ---~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~ 167 (396)
T TIGR00882 94 ---LQSNILVGAIVGGLYLGFVFS-AGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWL 167 (396)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHH
Confidence 000001 11111111111111 123333345444322 23456788888889999999999998888777777777
Q ss_pred HHHHHHHHHHHHHhhccc
Q 016431 358 YGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~ 375 (389)
.+.+..+..++.....++
T Consensus 168 ~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 168 GSGFALILMLLLMFAKPK 185 (396)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 666666554444433333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-09 Score=94.61 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=99.4
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
++.++.+++.||+|+|+.+.++.+...+..++.++++|.+.+++.++++|++.+...+....++.+. |+++|++..+++
T Consensus 255 ~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~ 333 (382)
T TIGR00902 255 IIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALY 333 (382)
T ss_pred HHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHH
Confidence 3567789999999999999999999999999999999999999999999999999999999999998 999999999998
Q ss_pred H-HHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHH
Q 016431 82 Q-LSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 119 (389)
Q Consensus 82 ~-~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~ 119 (389)
+ ...++|..+++.+++.+ ++ ..|++.+..+++..+..
T Consensus 334 ~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 334 NALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 6 56789999999999988 54 45666666655554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.6e-09 Score=86.65 Aligned_cols=121 Identities=18% Similarity=0.225 Sum_probs=96.0
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchh----HHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS----FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
-|.++.+++.||+|||+.+..+.+++++..++...+.+-. ++..+|++ ..+.+.+.+.|..|.+|.+-|+..
T Consensus 396 PGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPTavRatg 471 (528)
T KOG0253|consen 396 PGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPTAVRATG 471 (528)
T ss_pred CchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccchhhhhcc
Confidence 3778999999999999999999999999999887775433 34445554 445566888999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcccc--chHHHHHhhhHHHHHHHHHHhcccCCc
Q 016431 78 GSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPESP 126 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~--~wr~~f~~~~~~~~~~~~~~~~~~e~p 126 (389)
.|......-+|.++.|.++... +-..+..+.+..++++.+..+++|-.+
T Consensus 472 vGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 472 VGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 9999999999999999999443 344555666677777777777777443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=88.48 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc
Q 016431 202 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 279 (389)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
.......|.+.++.+.+..+ .......++..++.+..|++.||+|||+.+..+..+..++.... .. .+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~---~~------ 86 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA---PG------ 86 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh---cc------
Confidence 34455677888888887666 55666788999999999999999999999888776665554433 10 00
Q ss_pred cchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 016431 280 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 349 (389)
....+......+.+.+. ..+.......|.+| ++|+.+.++.+....+|..+++.+.+.+.+.
T Consensus 87 ------~~~l~~~~~~~g~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 148 (355)
T TIGR00896 87 ------TALLFAGTALIGVGIAI-INVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH 148 (355)
T ss_pred ------HHHHHHHHHHHHHHHHH-HhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111111111111 12233356677776 5799999999999999999999999888763
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.9e-09 Score=93.11 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=110.0
Q ss_pred chhhchHHHHhhhhhh--hHHHHhhHHHHHHHHHHHh--------ccchhHHHHHHHHhhhcccccccccceeeeeccCc
Q 016431 2 VGAIASGQIAEYIGRK--GSLMIAAVPNIIGWLIISF--------SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ 71 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 71 (389)
+|++++|++.||+|.| ++++.+++++.+..+...+ .++.+.+.+.-++.|+..|..++...++.+|..|+
T Consensus 332 ~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~ 411 (477)
T PF11700_consen 332 IGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP 411 (477)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Confidence 6889999999999999 9999999888776666666 67888899999999999999999999999999999
Q ss_pred ccccchhhhhHHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHHHhcccCC
Q 016431 72 NMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIPES 125 (389)
Q Consensus 72 ~~r~~~~~~~~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~ 125 (389)
++.+..+|++....-....+||++-+.+ +-|+.+....++.++.+++.++++++
T Consensus 412 g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 412 GREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence 9999999999999999999999999888 58888888888888877777777654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-06 Score=81.97 Aligned_cols=118 Identities=14% Similarity=0.234 Sum_probs=94.6
Q ss_pred hhhchHHHHhh-hhhhhHHHHhhHHHHHHHHHHHhccc--------hhHHHHHHHHhhhcccccccccceeeeeccCccc
Q 016431 3 GAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKD--------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 73 (389)
Q Consensus 3 g~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 73 (389)
..+++|.++|+ +||++.+.++.++..++.++.+++.. ....+++-.+.++|.|+.-|+..+...|-+++++
T Consensus 39 ~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~ 118 (654)
T TIGR00926 39 TPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ 118 (654)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc
Confidence 45788999995 79999999999999999988877521 1236677788899999999999999999997643
Q ss_pred ---ccchhhhhHHHHHHHHHHHHHhcccc-----------chHHHHHhhhHHHHHHHHHHh
Q 016431 74 ---RGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLGVLPCTLLIPGLF 120 (389)
Q Consensus 74 ---r~~~~~~~~~~~~lG~~l~~~i~~~~-----------~wr~~f~~~~~~~~~~~~~~~ 120 (389)
|-..+.++..+.++|.++++++..++ +|...|.+.++..++.++...
T Consensus 119 ~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 119 LSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999888776655 388899888887777655443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-07 Score=82.40 Aligned_cols=111 Identities=17% Similarity=0.117 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccch
Q 016431 229 VVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIP 308 (389)
Q Consensus 229 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (389)
+...++.++.|+++||+|||+.+..+..+..++..+......... ...+..........+.+.+. ....+..
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~r~l~G~~~-~~~~~~~ 117 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYAT-------IGIWAPILLLLARLIQGFSL-GGEWGGA 117 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhh-------hHHHHHHHHHHHHHHHHhhc-ccccccc
Confidence 333568899999999999999999988888877766654211000 00001111222222222222 2233445
Q ss_pred hhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHh
Q 016431 309 WVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 347 (389)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 347 (389)
..++.|.+|+++|+...+..+....+|..+++.+.+.+.
T Consensus 118 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 118 ALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999998876654
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-08 Score=85.91 Aligned_cols=102 Identities=16% Similarity=0.326 Sum_probs=79.5
Q ss_pred chhhchHHHHh----hhhhhhHHHH-hhHHHHHHHHHHHhccchh-----------------HHHHHHHHhhhccccccc
Q 016431 2 VGAIASGQIAE----YIGRKGSLMI-AAVPNIIGWLIISFSKDSS-----------------FLFMGRLLEGFGVGVISY 59 (389)
Q Consensus 2 ig~~~~g~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~~~~~~-----------------~~~~~r~l~G~~~~~~~~ 59 (389)
+-||+.|..+| ||||||.++. +.+..+++.++.+++++.. .++++--+.=++......
T Consensus 82 ~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qg 161 (498)
T KOG0637|consen 82 LVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQG 161 (498)
T ss_pred eecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhh
Confidence 45788999999 5898887665 6666777888888876543 344444455566667778
Q ss_pred ccceeeeeccCcccccc-hhhhhHHHHHHHHHHHHHhccccchHH
Q 016431 60 TVPVYIAEIAPQNMRGS-LGSVNQLSVTIGIMLAYLLGLFVNWRV 103 (389)
Q Consensus 60 ~~~~~i~~~~~~~~r~~-~~~~~~~~~~lG~~l~~~i~~~~~wr~ 103 (389)
.+.+++.|...++++.+ +.+.+....++|..+|..++.+.+|+-
T Consensus 162 p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~ 206 (498)
T KOG0637|consen 162 PCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYK 206 (498)
T ss_pred hHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceE
Confidence 88999999998777776 999999999999999999999887763
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.9e-08 Score=91.48 Aligned_cols=98 Identities=21% Similarity=0.326 Sum_probs=83.6
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc-cchhHHHHHHHHhhhcccccccccceeeeeccC-------ccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAP-------QNM 73 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~ 73 (389)
++.+++++++||+|||+++..+..+..++.+...+. ++.+.+.+..++.|++.+...+...++++|..+ +++
T Consensus 272 i~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (437)
T TIGR00792 272 IGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRA 351 (437)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccc
Confidence 567899999999999999999999888888777665 456677778889999999888888899888865 455
Q ss_pred ccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 74 RGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 74 r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
+|...++.+....+|..+++.+.+.+
T Consensus 352 ~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 352 EGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999888776
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-07 Score=82.05 Aligned_cols=141 Identities=17% Similarity=0.201 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeec
Q 016431 223 ATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSL 302 (389)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (389)
......+++++|+...++++||+|||..+....++..++.++.......... ...+++-++.+...+.
T Consensus 65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~------------e~li~GR~i~Gl~~gl 132 (485)
T KOG0569|consen 65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSF------------EMLILGRLIVGLACGL 132 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHhHH
Confidence 3445579999999999999999999999999888888888777765443322 2334444443333333
Q ss_pred ccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHh-HHHhhh-ccchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 303 GVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA-NFLLDW-SSGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~-g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
... ....+..|+.|.+.||....+......+|..++..++ ..+... ..|...+....+..+...+...+.||+
T Consensus 133 ~~~-~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PES 207 (485)
T KOG0569|consen 133 STG-LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPES 207 (485)
T ss_pred HHH-HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 322 2338899999999999999999888888888885444 333332 222333333344444445556667764
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-07 Score=81.80 Aligned_cols=144 Identities=10% Similarity=-0.053 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc
Q 016431 202 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 279 (389)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
.....++|.+.++.|.+..+ .......+...++.++.|++.||++|+........+..... .+... ...
T Consensus 21 g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~-~~~~~-~~~------- 91 (382)
T PRK11128 21 GVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF-AVAFW-FGA------- 91 (382)
T ss_pred HHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH-HHHHH-Hhc-------
Confidence 45555667778888887666 55566678888999999999999998432111111111111 11110 000
Q ss_pred cchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHH
Q 016431 280 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIY 358 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~ 358 (389)
...+...+...+...+ .....|...++..+. .++|+.+.+.....+.+|..++|.+.+.+.+ .++...++..
T Consensus 92 ----~~~~~l~i~~~l~g~~-~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~ 164 (382)
T PRK11128 92 ----HSFWLLFVAIGLFNLF-FSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWIL 164 (382)
T ss_pred ----ccHHHHHHHHHHHHHH-HcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 0011111111111111 223344444555554 4557888999999999999999999999988 4666666555
Q ss_pred HHH
Q 016431 359 GIV 361 (389)
Q Consensus 359 ~~~ 361 (389)
++.
T Consensus 165 ~~~ 167 (382)
T PRK11128 165 TAG 167 (382)
T ss_pred HHH
Confidence 543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-07 Score=81.00 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=81.2
Q ss_pred hchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHHH
Q 016431 5 IASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS 84 (389)
Q Consensus 5 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 84 (389)
+...+..+|...+.=......+..++.++.++++|.+.=+++-.+.+++.|........+ +..+++ ...+-+..+
T Consensus 77 l~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~----~~l~~wssG 151 (402)
T PF02487_consen 77 LIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK----SSLSAWSSG 151 (402)
T ss_pred HHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc----cccccccCC
Confidence 345667777775555666677888899999999999988899999999998888777776 345543 356777888
Q ss_pred HHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHHHh-cccCC
Q 016431 85 VTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF-FIPES 125 (389)
Q Consensus 85 ~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~~~-~~~e~ 125 (389)
.+.+.++|+..-..+ +-|..+.+.....++..+.++ .+|++
T Consensus 152 TG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 152 TGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred cChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 887777777654443 457777776665555544444 44443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-07 Score=80.71 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=97.6
Q ss_pred CCCCcc--HHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHH
Q 016431 216 GISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVG 292 (389)
Q Consensus 216 ~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (389)
|+++.+ .....+....-...+++|+++|| +|+|+.+..+.+++.++.++++.... .......++
T Consensus 57 g~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~-------------~~~~gl~i~ 123 (498)
T COG3104 57 GFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV-------------SGPGGLYIG 123 (498)
T ss_pred CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc-------------ccccHHHHH
Confidence 366555 33333444455778899999999 69999999999999999999885310 011223333
Q ss_pred hhheeeeeecccccchhhhhccccccch--hhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHHHHHH
Q 016431 293 LVTVVISFSLGVGAIPWVIMSEILPVNI--KSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVS 370 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
+.+...+.+ ..=|...++..|++|+++ |..++++..+..++|+.++|.+.+++.+..++..-+-.+.+....+++.+
T Consensus 124 L~~I~iG~G-l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 124 LALIIVGTG-LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred HHHHHhccc-cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 333333332 333455588999998654 67778888889999999999999999995555555555555555555555
Q ss_pred hhcc
Q 016431 371 LWVP 374 (389)
Q Consensus 371 ~~~~ 374 (389)
...+
T Consensus 203 ~~~~ 206 (498)
T COG3104 203 LLGR 206 (498)
T ss_pred HHcc
Confidence 5444
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-05 Score=72.54 Aligned_cols=96 Identities=5% Similarity=0.037 Sum_probs=71.7
Q ss_pred hhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc--c-----------------------------chhHHHHHHHHhhh
Q 016431 4 AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--K-----------------------------DSSFLFMGRLLEGF 52 (389)
Q Consensus 4 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~-----------------------------~~~~~~~~r~l~G~ 52 (389)
.++.+++++|++|++++-+....+.....++++. | +.|...+.-+...+
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 5778999999999999988777777766666654 1 12223333344444
Q ss_pred ccccccc-ccceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 53 GVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 53 ~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
-...... .-..+..|.++.+|-.|..++.+.+.++|.++++.+..++
T Consensus 141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4434444 6678899999999999999999999999999999887765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7e-07 Score=82.80 Aligned_cols=137 Identities=19% Similarity=0.112 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
.......++..++.++.|+++|++|||+.+..+.+...++.++.+.. .......++-.+.+.+.+
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a---------------~~~~~l~~GR~l~G~g~G 157 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA---------------PSWYQLIVGRILTGLGVG 157 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHhccchh
Confidence 66666789999999999999999999999999999999998888864 233455566666665555
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh---ccchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW---SSGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
..... ...+.+|..|++.||...+..+....+|..++ .+.+...+. ++...+.+..+.+.+. .+..++.||+
T Consensus 158 ~~~~~-~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~~pes 232 (513)
T KOG0254|consen 158 GASVL-APVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVIL-ALGMLFLPES 232 (513)
T ss_pred hhhhc-chhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHH-HHHHHhCCCC
Confidence 44433 34999999999999999999999888888887 444444432 2333333333333333 3336666653
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-07 Score=83.08 Aligned_cols=140 Identities=19% Similarity=0.087 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
........+.+++.+.++++.||+|.|+++..+.++.+++.++..+...... ...++.-++-+.+ .
T Consensus 77 ~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~-------------~~~~~~R~lqGl~-~ 142 (466)
T KOG2532|consen 77 LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF-------------YLLLVLRFLQGLG-Q 142 (466)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc-------------hhhHHHHHHhHHH-H
Confidence 5666778999999999999999999999999999999998888886543321 1222222222222 2
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh--hccchhhHHHHHHHHHHHHHHHhhccc
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD--WSSGGTFLIYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
....|....+..+-.|+++|++..++.....++|.+++-++.|.+-+ .|+...|++.+++..+..++-..+..+
T Consensus 143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 33456666889999999999999999999999999999999999988 577788999998888776665555443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-08 Score=84.71 Aligned_cols=124 Identities=22% Similarity=0.233 Sum_probs=109.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+|++++|+|.||+|.|+++..++++..+.++..-+...-..+.+.-.+.|.+.|+.+..+.++..+..|++|-++.+|++
T Consensus 303 lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFgly 382 (438)
T COG2270 303 LGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLY 382 (438)
T ss_pred HHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehh
Confidence 68899999999999999999999999999998888877777778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHHHHHHhcccCC
Q 016431 82 QLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIPES 125 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~ 125 (389)
+...-.+..+||.+-+.+ +-|.-+....++..+.++....+|+.
T Consensus 383 altgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 383 ALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 999999999999988877 67777776666666667777777765
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-07 Score=85.97 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=82.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc--chhHHHHHHHHhhhcccccccccceeeeeccCcc-------
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN------- 72 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------- 72 (389)
+++++++++.||+|+|+++.++.++..++.++..+.+ +.+.+.+..++.|+|.+...+...++..|..|++
T Consensus 279 ~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r 358 (448)
T PRK09848 279 ASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVR 358 (448)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCcc
Confidence 4678899999999999999999999888888777754 5667777788999999999999999999988754
Q ss_pred cccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 73 MRGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 73 ~r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
++|...+..+....+|..+++.+.+.+
T Consensus 359 ~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 359 IEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348888999999999999988877654
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.9e-07 Score=74.83 Aligned_cols=309 Identities=13% Similarity=0.127 Sum_probs=176.7
Q ss_pred chHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHHHH
Q 016431 6 ASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSV 85 (389)
Q Consensus 6 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 85 (389)
+.=.+.|..-.|++++.-.+.....-.+.-+.++.+..=+.-++.|...+ ...+-++++-+..+|+++.++.+...+..
T Consensus 61 pvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~ 139 (433)
T KOG3810|consen 61 PVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAF 139 (433)
T ss_pred HHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHH
Confidence 34457788888999888777777777788889999999889999999774 45678899999999999999999998888
Q ss_pred HHHHHHHHHhcccc------chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHHHHH
Q 016431 86 TIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEI 159 (389)
Q Consensus 86 ~lG~~l~~~i~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
-.|-..|..++..+ ++...-.+......++.....++|..+|.+..+.+.++.. ..+....++ ..+.
T Consensus 140 L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v~~~e~~~~-----~~~~ 212 (433)
T KOG3810|consen 140 LVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--VGDLEEMNP-----QASY 212 (433)
T ss_pred HHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--eccchhcCc-----cchh
Confidence 88888888777776 4455555665666666777788888776554443333211 111111110 0000
Q ss_pred HHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc----HHHHHHHHHHHHHH
Q 016431 160 KRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN----VATFGLGVVQVVAT 235 (389)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 235 (389)
.+..+.....-.....+..+++.. +--.+.+....++++....|...+.++..-.+.. ..-....+.++++.
T Consensus 213 ~~~l~~~~~~l~~~l~~~y~np~l----l~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~ 288 (433)
T KOG3810|consen 213 MSYLRGAFVLLWRDLQECYSNPRL----LKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAA 288 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhcCchh----hhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHH
Confidence 000000011111223333444433 3333344444555777777877777765422222 23334456677778
Q ss_pred HHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccc
Q 016431 236 GVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEI 315 (389)
Q Consensus 236 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (389)
+..|.+--++.|..-+.++..-...+-.++. .... ...+....+..++...+... .++....+++.
T Consensus 289 ~~~g~l~i~w~r~g~~ll~~~s~~~agllf~-m~~t------------~~Iw~~Ya~yvlfr~~y~l~-itiA~~~iA~n 354 (433)
T KOG3810|consen 289 LAAGYLNINWNRWGDLLLAVGSAVQAGLLFI-MAQT------------QHIWVCYAGYVLFRVIYQLT-ITIATFQIARN 354 (433)
T ss_pred HHHHheeeccchhhHHHHHHHHHHhhhhhhh-hhcc------------cceehhhhhHHHHHhhHhhh-hhHHHHHHHHh
Confidence 8888886555554332222221111111111 1111 11223333333333333332 23333555566
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHH
Q 016431 316 LPVNIKSLAGSVATLANWLVSWIVT 340 (389)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~g~~~~~ 340 (389)
...|.-|..+|++++..-+-..+-.
T Consensus 355 L~~e~~gLvFGiNTFvAl~lQsilT 379 (433)
T KOG3810|consen 355 LSSELFGLVFGINTFVALILQSILT 379 (433)
T ss_pred hhhhhheeeeehHHHHHHHHHHhhe
Confidence 6777788999988876655444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-06 Score=78.21 Aligned_cols=173 Identities=15% Similarity=0.073 Sum_probs=97.4
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHhhcCCCCccHHH----HHHHHHHHHHHHHH-HHHHhhhchhHHHHHHhHHHHH-HHH
Q 016431 190 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVAT----FGLGVVQVVATGVN-TWLMDKAGRRLLLLISSSGMAA-SFF 263 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-g~l~d~~~~~~~~~~~~~~~~~-~~~ 263 (389)
....++.+...+.....+.|.++++.|.+..+... .......++..++. ++..||+|||+..++...+... ...
T Consensus 6 ~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~ 85 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLA 85 (390)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHH
Confidence 33444455555566777889999999987777322 23356666666666 4468888988876555432222 222
Q ss_pred HHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHh
Q 016431 264 LVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 343 (389)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 343 (389)
.+... ... ................+.....+....+..|..+++.++...+.......+|..+++...
T Consensus 86 ~~~~~--~~~----------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~ 153 (390)
T TIGR02718 86 SLALV--GPD----------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT 153 (390)
T ss_pred HHHcC--Ccc----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 000 000011111111111222233344455667777777777777777777788888888888
Q ss_pred HHHhh-hccchhhHHHHHHHHHHHHHHHhhcc
Q 016431 344 NFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVP 374 (389)
Q Consensus 344 g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (389)
+++.+ .++...+++.+++..+..+......+
T Consensus 154 ~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 154 LVLFGKFGQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88887 46666777777666555444444333
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.8e-07 Score=82.86 Aligned_cols=136 Identities=16% Similarity=0.097 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
.......++..+|+++.|.++||+|||+++..+.++..++.+..++.. + .......-++.+.+.
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~---------------~-~~~~~~~Rfl~G~~~ 185 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP---------------N-YWMFLIFRFLSGFFG 185 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC---------------c-HHHHHHHHHHHHhhc
Confidence 556667889999999999999999999999999999888876666431 1 122222222233334
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHHHHHHHHHHHHhhcccC
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.+...+.+.+..|.+++++|+.+..+ ......++.+++...+++.. ++...++.......+..+ .+++.+|.
T Consensus 186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~-~~~l~~Es 257 (521)
T KOG0255|consen 186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLL-LWFLPPES 257 (521)
T ss_pred cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH-HHHccCcC
Confidence 45556667999999999999999999 88888888899999888877 344444444444333322 24444443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=79.85 Aligned_cols=173 Identities=21% Similarity=0.129 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHH
Q 016431 186 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 263 (389)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 263 (389)
...+.++..............+.+.+.++.+.+..+ +...+.........++.+.+.||+|.|.+.+.+.++..++++
T Consensus 47 V~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~ 126 (509)
T KOG2504|consen 47 VVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLL 126 (509)
T ss_pred eeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHH
Confidence 344444455555554555556667777777766664 555555666778899999999999999999999999999988
Q ss_pred HHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHh
Q 016431 264 LVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 343 (389)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 343 (389)
+..+.... ....+..-.+.+.++++...|.. ..+.. +-+++|+.++|+......+|..+-|.+.
T Consensus 127 lssF~~~i--------------~~l~lt~gvi~G~G~~~~~~pai-viv~~-YF~kkR~lA~Gia~~GsG~G~~~~~~l~ 190 (509)
T KOG2504|consen 127 LSSFATSL--------------WQLYLTFGVIGGLGLGLIYLPAV-VILGT-YFEKKRALATGIAVSGTGVGTVVFPPLL 190 (509)
T ss_pred HHHHHhhH--------------HHHHHHHHHHhhccchhhhcchh-hhhhh-HhHHHHHHHHhhhhccCCcceeeHHHHH
Confidence 87754211 11112222233444455555554 45554 4467799999999999999999999999
Q ss_pred HHHhh-hccchhhHHHHHHHHHHHHHHHhhcc
Q 016431 344 NFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVP 374 (389)
Q Consensus 344 g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (389)
.++.+ .++....++.+.+.+-.........|
T Consensus 191 ~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 191 KYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99988 78888888888877555444444444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.4e-06 Score=69.90 Aligned_cols=131 Identities=11% Similarity=-0.046 Sum_probs=91.6
Q ss_pred HHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccch
Q 016431 205 LFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFY 282 (389)
Q Consensus 205 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (389)
-...|.+.+..+.+..+ ........+..++++..+++.+|+|+|+.++.+..+++++..++.-......
T Consensus 33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~--------- 103 (422)
T COG0738 33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKS--------- 103 (422)
T ss_pred hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhh---------
Confidence 33455555556666555 5666667888899999999999999999999999999998888752211111
Q ss_pred hHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 283 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
....+.+++....+.+ ........++..+.|++..+.-+.+.+.++.+|+.++|.+.+.+..
T Consensus 104 ---y~~FL~~lFila~Gi~-~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 104 ---YGFFLVALFILASGIG-LLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred ---HHHHHHHHHHHHhhhH-HHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1122222222222221 2223334788888888888888999999999999999999998876
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-06 Score=74.69 Aligned_cols=156 Identities=15% Similarity=0.081 Sum_probs=83.6
Q ss_pred HHHHHHHHHHh-hcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHH--HHHHHHHHHhhcccccC
Q 016431 203 GVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA--SFFLVSVAFFLEGFVSE 277 (389)
Q Consensus 203 ~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 277 (389)
....+.+..++ ..|++..+ .......+..++.+++.|.++||++.||.++.......+ +.....+.....
T Consensus 25 i~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll----- 99 (412)
T PF01306_consen 25 IFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLL----- 99 (412)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHH-----
T ss_pred HHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 33344455554 47887776 556666788899999999999999976655443332222 111111100000
Q ss_pred CccchhHHHH-HHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhH
Q 016431 278 DSRFYSILGI-LSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFL 356 (389)
Q Consensus 278 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 356 (389)
..+.. ..+++...+...+. +..|+..+++.+. .+..+.-.|=....+++|.+++..+.|.+.+.+++..++
T Consensus 100 -----~~n~~lg~iig~i~l~~~f~-~~~~~~Ea~~er~--sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fw 171 (412)
T PF01306_consen 100 -----QSNFWLGAIIGGIYLGLVFN-AGVPLSEAYAERV--SRRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFW 171 (412)
T ss_dssp -----HTT-HHHHHHTTTTTTTTTT-THHHHHHHHHHHH--HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHc-ccchHHHHHHHHH--HHHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHH
Confidence 01111 11222222222221 2234443444332 123456688889999999999999999999977777777
Q ss_pred HHHHHHHHHHHHHHh
Q 016431 357 IYGIVCAFTVAFVSL 371 (389)
Q Consensus 357 ~~~~~~~~~~~~~~~ 371 (389)
+......+..++...
T Consensus 172 i~s~~~~il~lll~~ 186 (412)
T PF01306_consen 172 IASAAAIILLLLLLL 186 (412)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH
Confidence 665544444433333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=78.24 Aligned_cols=141 Identities=15% Similarity=0.027 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
.....+.++.+++.+.++.+.||++-.+.+....++..+..++-.. . .....++++-++.+.+.
T Consensus 85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~---~-------------~s~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 85 VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA---V-------------HSFPGLIALRFLLGLFE 148 (495)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---H-------------hhhHHHHHHHHHHHHHh
Confidence 5666778999999999999999999555544433333322222211 1 11122333333344456
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-------hccchhhHHHHHHHHHHHHHHHhhcc
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-------WSSGGTFLIYGIVCAFTVAFVSLWVP 374 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (389)
.+..|....++..-+.+++|+..+|+.+....+|+++|+.+...+.+ .++.+.|++-+++.++.++++.+++|
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 66677777999999999999999999999999999999999988532 56778899999999999888888887
Q ss_pred cCCC
Q 016431 375 ETKG 378 (389)
Q Consensus 375 ~~~~ 378 (389)
+...
T Consensus 229 ~~P~ 232 (495)
T KOG2533|consen 229 DNPS 232 (495)
T ss_pred CChh
Confidence 6544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=71.91 Aligned_cols=122 Identities=18% Similarity=0.229 Sum_probs=92.3
Q ss_pred hhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc-------cchhHHHHHHHHhhhcccccccccceeeeeccCcccccc
Q 016431 4 AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS 76 (389)
Q Consensus 4 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 76 (389)
+++.|.+.||+|+|.++.+|.+...+|..+...+ +++|.+.+..++.|.+.+.....+.....+.+| ++||+
T Consensus 53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~ 131 (250)
T PF06813_consen 53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGT 131 (250)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCc
Confidence 4788999999999999999999999999887664 367788888888888877776666666678887 57999
Q ss_pred hhhhhHHHHHHHHHHHHHhcccc---c-hHHHHHhhhHHHHHHHHHHhcccCCc
Q 016431 77 LGSVNQLSVTIGIMLAYLLGLFV---N-WRVLAVLGVLPCTLLIPGLFFIPESP 126 (389)
Q Consensus 77 ~~~~~~~~~~lG~~l~~~i~~~~---~-wr~~f~~~~~~~~~~~~~~~~~~e~p 126 (389)
+.++.-...+++..+-..+...+ + -+..+.....+.++.++..+++++.|
T Consensus 132 vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 132 VVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred eehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 99999999999887766665555 2 33444444445555555656665544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.8e-07 Score=78.77 Aligned_cols=112 Identities=25% Similarity=0.472 Sum_probs=92.4
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccc--hhHHHHHHHHhhhcccccccccceeeeeccCc-ccccchh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD--SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLG 78 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~ 78 (389)
+++++.|.++||+|||+.+..+.....++.+..++.++ .+.+++.|+.+|++.+...+...+++.|+.|+ ++|+...
T Consensus 54 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (338)
T COG0477 54 IGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAV 133 (338)
T ss_pred HHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 34578999999999999999888776777777777776 88999999999999999999999999999987 6788888
Q ss_pred hhhHH-HHHHHHHHHHHhcccc------chHHHHHhhhHHHH
Q 016431 79 SVNQL-SVTIGIMLAYLLGLFV------NWRVLAVLGVLPCT 113 (389)
Q Consensus 79 ~~~~~-~~~lG~~l~~~i~~~~------~wr~~f~~~~~~~~ 113 (389)
+.... ...+|..+++.+++.+ +||..|........
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 134 GLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888 5778888888776655 68886665555443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-05 Score=71.79 Aligned_cols=137 Identities=15% Similarity=0.183 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeeccccc
Q 016431 227 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGA 306 (389)
Q Consensus 227 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (389)
.++..++.++..|.++||+|||..+........+....+.+. .++..+ ..-.. +.......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-----------------~~~~~~-~~~l~-g~~~~~~s 131 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-----------------GYWFFL-LLGLS-GGFSAIFS 131 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-----------------HHHHhh-hcccc-cchhhhhh
Confidence 367788899999999999999999888877776666655531 111111 21122 22233345
Q ss_pred chhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 016431 307 IPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLE 382 (389)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (389)
...++++|....+.|....|+.+.....+..++|.+.+.+.+ .+....+.+..+...+........+||+..++++
T Consensus 132 ~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 132 VGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred hhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 556999999999999999999999999999999999999998 5555566666666666666777778887655444
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.6e-06 Score=69.66 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=60.0
Q ss_pred hchHHHHh-----hhhhhhHHHH-hhHHHHHHHHHHHhc-----------cchhHHHHHHHHhhhcccccccccceeeee
Q 016431 5 IASGQIAE-----YIGRKGSLMI-AAVPNIIGWLIISFS-----------KDSSFLFMGRLLEGFGVGVISYTVPVYIAE 67 (389)
Q Consensus 5 ~~~g~l~d-----r~Grr~~l~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~ 67 (389)
+.|.++.| |+||||.-++ +..+.+....+.+.. ++...+...-++.-+..+.-..+.-.+.-.
T Consensus 81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt 160 (510)
T KOG3574|consen 81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT 160 (510)
T ss_pred HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 56888999 9999986543 444444444443332 233334334456666666666677777777
Q ss_pred ccCcccccchhhhhHHHHHHHHHHHHHhccc
Q 016431 68 IAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF 98 (389)
Q Consensus 68 ~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~ 98 (389)
..++++-|.+......+.+.|.+++..+--.
T Consensus 161 mLs~e~lgyaST~q~Vg~~~GyfL~~~ifLa 191 (510)
T KOG3574|consen 161 MLSRENLGYASTCQSVGQTAGYFLGNVVFLA 191 (510)
T ss_pred hcCHhhcCchhHHHHHHHhhhHHhhcceeeE
Confidence 7788888888777777777777776554433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=80.69 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=76.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHh-----ccchhHHHHHHHHhhhcccccccccceeeeeccCcc----
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN---- 72 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---- 72 (389)
++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|++.+...+...++++|..+.+
T Consensus 281 i~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~t 360 (473)
T PRK10429 281 VTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKL 360 (473)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhc
Confidence 56788999999999999999888877766655432 345667777778899999999988899999997632
Q ss_pred ---cccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 73 ---MRGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 73 ---~r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
+.|..++......-+|..+++.+.+.+
T Consensus 361 G~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 361 GIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235578888888888888888777665
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=79.26 Aligned_cols=98 Identities=22% Similarity=0.325 Sum_probs=86.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc--chhHHHHHHHHhhhcccccccccceeeeeccCcc-------
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN------- 72 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------- 72 (389)
++.+++++++||+|+|+.+..+..+.+++.++..+.+ |.+.+++.-++.|++.+...+...++++|..+.+
T Consensus 275 v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r 354 (428)
T PF13347_consen 275 VGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRR 354 (428)
T ss_pred HHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCC
Confidence 5678999999999999999999999999999988886 9999999999999999999999999999999743
Q ss_pred cccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 73 MRGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 73 ~r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
+.|...+..+....+|..+++.+.+.+
T Consensus 355 ~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 355 REGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred chHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 237778888888888888888777655
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-06 Score=79.66 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=76.6
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHh--ccchhHHHHHHHHhhhcccccccccceeeeeccCccc------
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM------ 73 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------ 73 (389)
++.+++++++||+|+|+.+..+.++..+......+ .++.+.+++..++.|++.+...+...++++|..+.+|
T Consensus 279 i~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r 358 (444)
T PRK09669 279 FGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRR 358 (444)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcC
Confidence 46678899999999999999888776654443322 3567778888899999999999999999999886322
Q ss_pred -ccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 74 -RGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 74 -r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
.|..++..+....+|..+|+.+++.+
T Consensus 359 ~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 359 LDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25567888888889999888888765
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-06 Score=76.53 Aligned_cols=121 Identities=21% Similarity=0.417 Sum_probs=94.9
Q ss_pred hchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc-cchhHHHH----HHHHhhhcccccccccceeeeeccCcccccchhh
Q 016431 5 IASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFM----GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 79 (389)
Q Consensus 5 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 79 (389)
...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+ ...++|+..+..+.....++.+..|++.|+++.+
T Consensus 261 ~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~ 340 (400)
T PF03825_consen 261 FFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQG 340 (400)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHH
Confidence 467889999999999999999999988888877 55554333 3456999999999999999999999999999999
Q ss_pred hhHHH-HHHHHHHHHHhcccc----------chHHHHHhhhHHHHHHHHH-HhcccCC
Q 016431 80 VNQLS-VTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTLLIPG-LFFIPES 125 (389)
Q Consensus 80 ~~~~~-~~lG~~l~~~i~~~~----------~wr~~f~~~~~~~~~~~~~-~~~~~e~ 125 (389)
+++.. .++|..+|..+++++ .|...+.+.+...++..+. +++.+|+
T Consensus 341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 341 LYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 98764 689999999999988 3555666666655555333 3344443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.7e-06 Score=73.84 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCcc
Q 016431 203 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 280 (389)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (389)
.+..++-.++++.+..+.- ......-.+.++..+..+++.+|+|+-+++..++.+...-++.+...
T Consensus 389 lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L------------ 456 (618)
T KOG3762|consen 389 LVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL------------ 456 (618)
T ss_pred HHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh------------
Confidence 3444444555665532222 44555567888999999999999999999988887777776665532
Q ss_pred chhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHH-HHHHHHHHHHHHhHHHhh-hccchhhHHH
Q 016431 281 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATL-ANWLVSWIVTMTANFLLD-WSSGGTFLIY 358 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~-~~~~~~~~~~ 358 (389)
+++|..+..-.+-....+..+..+. +|++...||+.++++.++... ...+|-.+|.+++|.+.+ .+....|.++
T Consensus 457 ---~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~ 532 (618)
T KOG3762|consen 457 ---QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIF 532 (618)
T ss_pred ---cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHH
Confidence 1111111111111112222223333 899999999999999999854 457899999999999988 6666677777
Q ss_pred HHHHHHHHHHHH
Q 016431 359 GIVCAFTVAFVS 370 (389)
Q Consensus 359 ~~~~~~~~~~~~ 370 (389)
++.+++..++..
T Consensus 533 giAcl~~l~~~~ 544 (618)
T KOG3762|consen 533 GIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHHH
Confidence 777666554433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.4e-05 Score=66.90 Aligned_cols=41 Identities=12% Similarity=-0.046 Sum_probs=33.1
Q ss_pred hhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 308 PWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
..++-+.+.+|..-|+.+.+.|+..++|+---..+.=++.|
T Consensus 426 i~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 426 IMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 34778888999999999999999999998766666555554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.9e-06 Score=70.79 Aligned_cols=113 Identities=16% Similarity=-0.007 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHh-hheeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGL-VTVVISF 300 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 300 (389)
.......++.++|++..|++.||+|||++.-..++++.++.++.+...... +. ....+.+... ..++.+
T Consensus 88 ~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~------~~---~~~m~~L~~~R~~LGiG- 157 (538)
T KOG0252|consen 88 LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTT------SP---LGVMMTLCFFRFLLGIG- 157 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCC------CC---cchhhHHHHHHHHhhcc-
Confidence 555566789999999999999999999999999888888887554321111 00 0111111211 222222
Q ss_pred ecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhH
Q 016431 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTAN 344 (389)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g 344 (389)
-.+-.|+..+..+|....+.||+-.+.....+..|...|..+.-
T Consensus 158 IGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~ 201 (538)
T KOG0252|consen 158 IGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVAL 201 (538)
T ss_pred ccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHH
Confidence 23557888899999999999998888876666666555544443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=72.12 Aligned_cols=143 Identities=10% Similarity=0.022 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGR-RLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 300 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (389)
+......++..+++++.|++..|.++ |+.++.+.+++.++.++........+ ...+..+++-.+.+ .
T Consensus 75 ~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~----------~~~y~mL~~R~l~G--v 142 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN----------GVKYLMLVARILTG--V 142 (488)
T ss_pred HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc----------chHHHHHHHHHHcC--c
Confidence 66666789999999999999999886 77888899999998888744322221 12234444444443 3
Q ss_pred ecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhh--------------ccchhhHHHHHHHHHHH
Q 016431 301 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW--------------SSGGTFLIYGIVCAFTV 366 (389)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~--------------~~~~~~~~~~~~~~~~~ 366 (389)
+.+.....-.|+++..-+++|.++++..+....+|..+||.+...+... .+..+.++...+..+..
T Consensus 143 g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~ 222 (488)
T KOG2325|consen 143 GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYI 222 (488)
T ss_pred CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHH
Confidence 4444556678999887778888888888887788888888776554431 12335566666666666
Q ss_pred HHHHhhcccC
Q 016431 367 AFVSLWVPET 376 (389)
Q Consensus 367 ~~~~~~~~~~ 376 (389)
++..++.+|.
T Consensus 223 v~i~~~f~E~ 232 (488)
T KOG2325|consen 223 VIILFFFKEV 232 (488)
T ss_pred HHHHhheeec
Confidence 6666666653
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-08 Score=91.88 Aligned_cols=142 Identities=20% Similarity=0.253 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
.......++.++|+++.|+++||+|||+.+..+..+..++.++..+.... .......++-.+.+.+.+
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~R~~~G~~~g 117 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY------------NNFWMLLIGRFLIGFGIG 117 (451)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc------------cccccccccccccccccc
Confidence 34555678889999999999999999999999998888888777643110 012233333333333332
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhcc---chhhHHHHHHHHHHHHHHHhhcccC
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSS---GGTFLIYGIVCAFTVAFVSLWVPET 376 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
+..+....++.|..|+++|+...++.+....+|..++..+.-...+... +........+..+...+...+.||+
T Consensus 118 -~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 118 -GAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred -ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3345556999999999999999999998888888887777654433222 3333334443333334444556653
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.1e-05 Score=63.52 Aligned_cols=66 Identities=23% Similarity=0.353 Sum_probs=49.3
Q ss_pred hhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhccccccccccee-eeecc
Q 016431 3 GAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY-IAEIA 69 (389)
Q Consensus 3 g~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~-i~~~~ 69 (389)
-+.+.|.++|+-|||+.-+.-.+.+.++++ .-.++++-.++++|.+-|+..+..+..--++ +.|.-
T Consensus 88 FGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 88 FGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 356789999999999987766666665544 3357889999999999999988877665543 34443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-05 Score=70.33 Aligned_cols=104 Identities=14% Similarity=0.283 Sum_probs=85.5
Q ss_pred hHHHHhhHHHHHHHHHHHhc--c-ch------hHHHHHHHHhhhcccccccccceeeeeccCcc---cccchhhhhHHHH
Q 016431 18 GSLMIAAVPNIIGWLIISFS--K-DS------SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN---MRGSLGSVNQLSV 85 (389)
Q Consensus 18 ~~l~~~~~~~~~~~~~~~~~--~-~~------~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 85 (389)
|+++++.++..+|.++..++ + +. +.++++-.+.++|.|+.-|...++.+|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 67888999999999985444 2 22 57889999999999999999999999999866 4567788999999
Q ss_pred HHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhc
Q 016431 86 TIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 121 (389)
Q Consensus 86 ~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~ 121 (389)
++|..+++.+..++ +|.+.|.+.++..+++++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999988 8999999998887777665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.8e-05 Score=63.48 Aligned_cols=154 Identities=21% Similarity=0.114 Sum_probs=84.2
Q ss_pred HHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHH
Q 016431 210 NIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGI 287 (389)
Q Consensus 210 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (389)
..+++.|++..+ ...........+...+.|.+.||+|||+.-+...++..++.+.--. ....
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~----------------~~~~ 122 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS----------------SNYP 122 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc----------------cccH
Confidence 344677887666 4444456777888899999999999999877766666666543221 0111
Q ss_pred HHHHHhhheeeeeecccccchhhhhcc----ccccchhhhhhhHHH-HHHHHHHHHHHHHhHHHhh-h--ccchhhHHHH
Q 016431 288 LSLVGLVTVVISFSLGVGAIPWVIMSE----ILPVNIKSLAGSVAT-LANWLVSWIVTMTANFLLD-W--SSGGTFLIYG 359 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~-~--~~~~~~~~~~ 359 (389)
..+++-.+.+.....-...--.=++.| -+|++..+..++... ..+.+-++.+..+...+.+ . +.-.+|....
T Consensus 123 ~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~ 202 (354)
T PF05631_consen 123 VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAI 202 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHH
Confidence 222222211111111100000112333 355565566666555 3455556666666666666 2 3355666666
Q ss_pred HHHHHHHHHHHhhcccCCCC
Q 016431 360 IVCAFTVAFVSLWVPETKGR 379 (389)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~ 379 (389)
.+..+..++.....+|..++
T Consensus 203 ~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 203 VLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHHhcccccCCC
Confidence 66666666555556665443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.7e-05 Score=69.25 Aligned_cols=98 Identities=17% Similarity=0.322 Sum_probs=79.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc--chhHHHHHHHHhhhcccccccccceeeeeccCccc------
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM------ 73 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------ 73 (389)
++.+++.++++|+|+|+++.++.++..++.++.-+.+ +.+.+++..++.++|.+...+...++++|..+.+|
T Consensus 287 ~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R 366 (467)
T COG2211 287 IGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVR 366 (467)
T ss_pred HHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCC
Confidence 3578899999999999999999999999999998876 78888889999999999999999999999876432
Q ss_pred -ccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 74 -RGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 74 -r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
-|...+......=+|..++..+.++.
T Consensus 367 ~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 367 REGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25566666666667777766555544
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.9e-06 Score=61.91 Aligned_cols=95 Identities=16% Similarity=0.239 Sum_probs=81.9
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..+.....++.+..++++|++..+++
T Consensus 52 ~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~if 130 (156)
T PF05978_consen 52 ISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIF 130 (156)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHH
Confidence 467888999999999999999999998654443 5677889999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcc
Q 016431 82 QLSVTIGIMLAYLLGL 97 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~ 97 (389)
......+.++|.++..
T Consensus 131 w~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 131 WAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.5e-06 Score=77.91 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=93.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc----------cchhHHHHHHHHhhhcccccccccceeeeeccCc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS----------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ 71 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 71 (389)
+|....+++.+|++.|+++.++.++.+++.+..... ++.+.+...-++.+++.+........++.+..|+
T Consensus 303 ~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~ 382 (468)
T TIGR00788 303 CGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPS 382 (468)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCC
Confidence 467788888899999999999999999888654311 3444555667888998888899999999999999
Q ss_pred ccccchhhhhHHHHHHHHHHHHHhcccc----c-----hHHHHHh---hhHHHHHHHHHHhcccC
Q 016431 72 NMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-----WRVLAVL---GVLPCTLLIPGLFFIPE 124 (389)
Q Consensus 72 ~~r~~~~~~~~~~~~lG~~l~~~i~~~~----~-----wr~~f~~---~~~~~~~~~~~~~~~~e 124 (389)
++++...++.+...++|..+++.+++.+ | ++..+.. ..+..++.+....++|+
T Consensus 383 ~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 383 GCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999988877 2 4433332 22333344444457785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-06 Score=77.53 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=100.9
Q ss_pred hhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHH
Q 016431 4 AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL 83 (389)
Q Consensus 4 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 83 (389)
-++.+++.+|+|+-+++.+++.+..+=.+..++.+|.|..+..-+++|+..+..+.+..+|+++..||+-|..+.++.+.
T Consensus 423 ~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g 502 (618)
T KOG3762|consen 423 YFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQG 502 (618)
T ss_pred HHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred H-HHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhc
Q 016431 84 S-VTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 121 (389)
Q Consensus 84 ~-~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~ 121 (389)
. .++|--+|.++|+.+ +=|..|.+.++.+++.++....
T Consensus 503 ~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 503 IFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 4 356666666666665 7888888888877776555443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.8e-05 Score=68.55 Aligned_cols=136 Identities=10% Similarity=0.039 Sum_probs=77.0
Q ss_pred HHHHHHHHHH-hhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhh----hchhH-HHHHHhHHHHHHHHHHHHHHhhccc
Q 016431 203 GVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDK----AGRRL-LLLISSSGMAASFFLVSVAFFLEGF 274 (389)
Q Consensus 203 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (389)
....|+.+++ +..|+++.. ....+.-+...+.-++.|.++|| +|||+ .+..+.+.++++..++... +..
T Consensus 27 ~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~---p~~ 103 (460)
T PRK11462 27 NVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST---PDL 103 (460)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC---CCC
Confidence 3344444444 345776555 44455567788999999999997 46654 4555556666554443311 100
Q ss_pred ccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccc-cchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 275 VSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILP-VNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
+.. .......+...++..++.....|- .++..|..+ +++|++..+.-.....+|..+++.+...+.+
T Consensus 104 -----s~~-~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~ 171 (460)
T PRK11462 104 -----SMN-GKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVN 171 (460)
T ss_pred -----Ccc-hHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 101111222222222333222232 377777766 7789999999999999988888777655554
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.9e-06 Score=70.75 Aligned_cols=105 Identities=12% Similarity=0.038 Sum_probs=80.5
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+|.+..+++.||+|+||.+.++..+..++.++....++...+ ..-++.|++.+..+|...+...+..|++ .+++.++.
T Consensus 193 iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~ 270 (310)
T TIGR01272 193 VGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL 270 (310)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH
Confidence 578899999999999999999888888887766665554333 3556889999999999999888888754 45666665
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhh
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGV 109 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~ 109 (389)
....+|..+.|.+.+.+ |.+..|++..
T Consensus 271 -~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 271 -CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred -HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 45668888999877766 6677776443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00018 Score=58.22 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=36.0
Q ss_pred ccccchhhhhHHHHHHHHHHH--HHhcc-cc------chHHHHHhhhHHHHHHHHHHhcc
Q 016431 72 NMRGSLGSVNQLSVTIGIMLA--YLLGL-FV------NWRVLAVLGVLPCTLLIPGLFFI 122 (389)
Q Consensus 72 ~~r~~~~~~~~~~~~lG~~l~--~~i~~-~~------~wr~~f~~~~~~~~~~~~~~~~~ 122 (389)
|+|+..+.+...+.++|.++. |.+-. -. +|++++.+.+++..+-++++..+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888999998865 43333 11 89999988887766655555443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0008 Score=63.68 Aligned_cols=129 Identities=17% Similarity=0.124 Sum_probs=80.4
Q ss_pred HhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHH
Q 016431 212 FANAGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGIL 288 (389)
Q Consensus 212 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (389)
....+.++.. ..........-+..+++|+++|+ +|+++.+..+.++..++..++.+..... .... .....
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~-----~~~~--~~~~~ 87 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPS-----SGHP--LHDLL 87 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcc-----cccc--hHHHH
Confidence 3345665554 22333344445677888999997 7999999999988888887776521100 0000 11122
Q ss_pred HHHHhhheeeeeecccccchhhhhccccccc---hhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 289 SLVGLVTVVISFSLGVGAIPWVIMSEILPVN---IKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
.+.++.+...+.+ +.-|...+...|.++++ .+...+.+.....++|+.+++.+.+++.+
T Consensus 88 ~l~gLaLia~G~G-giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~ 149 (654)
T TIGR00926 88 DLLGLALIALGTG-GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG 149 (654)
T ss_pred HHHHHHHHHhhcc-ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433333333 33344447778877654 36677888888999999999999998874
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0034 Score=57.11 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=63.7
Q ss_pred hhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc---------cch----------------------hHHHHHHHHhhh
Q 016431 4 AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------KDS----------------------SFLFMGRLLEGF 52 (389)
Q Consensus 4 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~~----------------------~~~~~~r~l~G~ 52 (389)
.....+++|+++|.+++-+....+.....++++. ++. |.+.+..+..-+
T Consensus 76 ~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aEl 155 (491)
T PF03219_consen 76 TILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAEL 155 (491)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999887776666666555552 111 111122222222
Q ss_pred ccccccc-ccceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 53 GVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 53 ~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
-.....+ .-..+..|.++.+|-.|..++.+.+.++|.++++.+...+
T Consensus 156 wgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 156 WGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 3467788999999999999999999999999888776655
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.1e-05 Score=61.96 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=84.1
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHH-HHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPN-IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 80 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 80 (389)
+.+++.|.++||+|++-..+.+..+. .++.....++ ++.=.....+.|+............++...|+++.|++.+.
T Consensus 315 v~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf 392 (459)
T KOG4686|consen 315 VLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGF 392 (459)
T ss_pred hhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHH
Confidence 35788999999999998887755444 4444444443 23334456677887766655566777888899999999999
Q ss_pred hHHHHHHHHHHHHHhcccc-------chHHHHHh-hhHHHHHHHHHHhcc
Q 016431 81 NQLSVTIGIMLAYLLGLFV-------NWRVLAVL-GVLPCTLLIPGLFFI 122 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~~-------~wr~~f~~-~~~~~~~~~~~~~~~ 122 (389)
.+...++|..+.|++++.+ .|--.|.+ .+.+++....+.+.+
T Consensus 393 ~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 393 IQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 9999999999999999998 35445544 444555544444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00073 Score=58.74 Aligned_cols=119 Identities=10% Similarity=-0.007 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHhhhc-----hhHHH-HHHhHHHHHHHHHHHHHHhhccc-ccCCccchhHHHHHHHHHhhheeeeee
Q 016431 229 VVQVVATGVNTWLMDKAG-----RRLLL-LISSSGMAASFFLVSVAFFLEGF-VSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 229 ~~~~~~~~~~g~l~d~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
-...+.++..|+.+|+.+ ||... ..+......+..+.......... ..+...............+..++.+..
T Consensus 25 ~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~ 104 (403)
T PF03209_consen 25 YLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVH 104 (403)
T ss_pred HHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHh
Confidence 334467899999999988 66544 44555555555544443333222 111111111222233333444444433
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
... ....++.+|..|+++|+++.++.....-+|..++..+.|.+.+
T Consensus 105 ~s~-T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 105 ASG-TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred HhH-HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 332 3344899999999999999999999999999999999998887
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0004 Score=45.48 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=46.4
Q ss_pred hcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhH
Q 016431 198 LSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSS 256 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 256 (389)
++....+..|.+.++++.|++..+ ....+..+..+++.++.|.++||.++++.......
T Consensus 13 f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 333556777888888889998777 66666788999999999999999999887655443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0028 Score=54.09 Aligned_cols=152 Identities=14% Similarity=0.058 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
.......++.+.++.+.+... ..+.+..+.....++...++.+|+|.++.+..+.++.+++..+=...
T Consensus 28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~---------- 97 (395)
T COG2807 28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG---------- 97 (395)
T ss_pred hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc----------
Confidence 345555667777778887665 66666777888889999999999999999988888877776654321
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhc--cchhhH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWS--SGGTFL 356 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--~~~~~~ 356 (389)
.....+.+..+.+.+.+.+ +.+....+-+.+|++ .+..+|++.+...+++++++.+.-.+.++. +.....
T Consensus 98 ------~~~~L~~gt~l~G~gIav~-nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~ 169 (395)
T COG2807 98 ------GLPLLFLGTLLAGAGIAVI-NVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG 169 (395)
T ss_pred ------cHHHHHHHHHHHHhhHHHH-HHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence 1122223333222222211 233347788888765 789999999999999999999998888844 333444
Q ss_pred HHHHHHHHHHHHHHh
Q 016431 357 IYGIVCAFTVAFVSL 371 (389)
Q Consensus 357 ~~~~~~~~~~~~~~~ 371 (389)
..+..+.+ .++.+.
T Consensus 170 ~WAl~all-Al~~Wl 183 (395)
T COG2807 170 FWALLALL-ALLIWL 183 (395)
T ss_pred HHHHHHHH-HHHHHh
Confidence 44444333 333443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0027 Score=59.01 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=89.6
Q ss_pred hhhchHHHHhh-hhhhhHHHHhhHHHHHHHHHHHhccc-------------------------hhHHHHHHHHhhhcccc
Q 016431 3 GAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKD-------------------------SSFLFMGRLLEGFGVGV 56 (389)
Q Consensus 3 g~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~r~l~G~~~~~ 56 (389)
..+.+++++|- +||-+++.++.++..++..+..++.. ...+....-+..+|.|+
T Consensus 89 ~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg 168 (571)
T KOG1237|consen 89 LPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGG 168 (571)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCC
Confidence 35778999996 59999999998888888655544311 12566677788899999
Q ss_pred cccccceeeeeccC---cccc---cchhhhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHh
Q 016431 57 ISYTVPVYIAEIAP---QNMR---GSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 120 (389)
Q Consensus 57 ~~~~~~~~i~~~~~---~~~r---~~~~~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~ 120 (389)
.-|...++-+|-++ ++++ ...+.++....++|..++..+-.+. +|.+-|.+..+...+++++++
T Consensus 169 ~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 169 IRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred CCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHH
Confidence 99999999999998 3222 3668888888999999888777776 899999887776666554443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.034 Score=49.71 Aligned_cols=97 Identities=10% Similarity=0.036 Sum_probs=65.0
Q ss_pred hhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc---------cch-----------------------hHHHHHHHHh
Q 016431 3 GAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------KDS-----------------------SFLFMGRLLE 50 (389)
Q Consensus 3 g~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~~-----------------------~~~~~~r~l~ 50 (389)
..++.+++.+++.|.+++-.-...+....+++++. +++ |...+.....
T Consensus 78 f~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~a 157 (509)
T COG3202 78 FTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMA 157 (509)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHH
Confidence 45678899999999999988888887777777763 110 1111111111
Q ss_pred hhccccccc-ccceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 51 GFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 51 G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
=+-.+.... .-.....|.++.+|-.|..++++.+.+++..++..+..++
T Consensus 158 ELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 158 ELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 2234567888888889999999999999999998888877
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0021 Score=58.28 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=84.5
Q ss_pred HHHHhhcCCCCccHHHHHHHHHH--HHHHHHHHHHHhhhc-----hhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccc
Q 016431 209 SNIFANAGISSSNVATFGLGVVQ--VVATGVNTWLMDKAG-----RRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRF 281 (389)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~l~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (389)
+.+.++.|.++.+... ...+.. -...++.|.++|-+. ||+.+.++.++...+...++...... .
T Consensus 14 ~~l~~~l~ls~~~~~~-~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~------~-- 84 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQR-LSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE------S-- 84 (433)
T ss_pred HHHHHHcCCCHHHHHH-HHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc------c--
Confidence 3445567887666332 222333 356789999999863 55556666655544444444321100 0
Q ss_pred hhHHHHHHHHHhhheeeeeecccccchhhhhcccc---ccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHH
Q 016431 282 YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEIL---PVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 357 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~ 357 (389)
........+.+...+.... .....++..|.. |.+ ++...+.......+|+.++..+.|.+.+ .+....+.+
T Consensus 85 ---s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i 159 (433)
T PF03092_consen 85 ---SAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI 159 (433)
T ss_pred ---hhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence 0011111111111111111 123335666664 333 7778888888999999999999999988 555556666
Q ss_pred HHHHHHHHHHHHHhhccc
Q 016431 358 YGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~ 375 (389)
.+.+..+..+......+|
T Consensus 160 ~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 160 SAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 666655555555555554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0066 Score=53.45 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCcc
Q 016431 201 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 280 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (389)
+..+..+...++. ..+...+...++.+..++..+.+-|+.||.|-|....++....+++..+=.+...- ..+++.
T Consensus 64 ya~i~n~~~~~Yg--s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p--~v~~~f- 138 (480)
T KOG2563|consen 64 YAPINNYVNSFYG--SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLP--FVPPLF- 138 (480)
T ss_pred ehhHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCc--cccccc-
Confidence 3444444444442 11122267777788899999999999999999999999999988888765543211 000110
Q ss_pred chhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 281 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
+ . .....+-.+...... ....+..-...--+|+++|+++..+..+.+.+|.+++..+.+.+..
T Consensus 139 -~--~-~l~~~Gq~iaa~Aq~-Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 139 -R--R-PLTHTGQSIAAAAQP-FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred -h--h-hhhHHhHHHHHHhhh-HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 0 0 111111111111100 0011111333446899999999999999999999998888877765
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.029 Score=42.49 Aligned_cols=110 Identities=7% Similarity=-0.104 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 301 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
....+......+.+++.+.+.+++|.|+.+.++.+...+-...... ...+....+..+.+.+.+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~----------------~~~~~l~~~s~l~G~~~a 104 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY----------------PNSYTLYPASALLGFGAA 104 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHhhhhH
Confidence 4455556667788888999999999999998887766644333221 112222333333333333
Q ss_pred cccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 302 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
..+ ...-.++.+...++.+++..++.-.....+..+|..+.-.+..
T Consensus 105 ~lW-~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 105 LLW-TAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred Hhh-HhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333 3333778888888899999998888888877777766654443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0094 Score=53.83 Aligned_cols=84 Identities=11% Similarity=0.041 Sum_probs=48.0
Q ss_pred chhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc-----c-----hH--HHHH
Q 016431 39 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----N-----WR--VLAV 106 (389)
Q Consensus 39 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~-----~-----wr--~~f~ 106 (389)
.++..++.-++.|++.+.......++.+ .+|++ .+..+..+.+++.+++..+--.. + ++ .-|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 3566677778899999888888887766 45544 34445555555554443332211 1 12 2233
Q ss_pred hhhHHHHHHHHHHhcccCCch
Q 016431 107 LGVLPCTLLIPGLFFIPESPR 127 (389)
Q Consensus 107 ~~~~~~~~~~~~~~~~~e~p~ 127 (389)
+..+..+++++....+++.|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 444455555666666666653
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.00038 Score=59.89 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=2.3
Q ss_pred ccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHh
Q 016431 305 GAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 343 (389)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 343 (389)
..+...+..+..++++|..+-.+....-.+|-.+|..+.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888888888887777777777766666544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.062 Score=47.58 Aligned_cols=156 Identities=7% Similarity=0.043 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhh-cCCCCccHHHHHH---HHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 203 GVLFYSSNIFAN-AGISSSNVATFGL---GVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 203 ~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
.-++..|++.+. .|++..+...-+. .=..+..-+....+.|.++.|++++.+.+...+...++.+.
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~---------- 91 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG---------- 91 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----------
Confidence 335555666554 6777666332222 23345566777789999999999988887777666665532
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhcc--chhhH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSS--GGTFL 356 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~--~~~~~ 356 (389)
......-+.-++++ ...+.-...++++=...|+++--++.+......-+|..++..++..+...+. .....
T Consensus 92 -----~sv~~mq~~q~~yg--~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~ 164 (412)
T PF01770_consen 92 -----TSVLAMQLMQFFYG--LATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLN 164 (412)
T ss_pred -----CcHHHHHHHHHHHH--HHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 11111111111111 1122223445677777888888899999999999999999888888777322 22222
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 016431 357 IYGIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~ 375 (389)
.........+++..+++|.
T Consensus 165 ~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 165 YISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 3333334444444455554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.084 Score=48.05 Aligned_cols=118 Identities=12% Similarity=0.060 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccc-cCCc----------cchhHH----HHHHHHHhhh
Q 016431 231 QVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFV-SEDS----------RFYSIL----GILSLVGLVT 295 (389)
Q Consensus 231 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~----~~~~~~~~~~ 295 (389)
.++..++.+++++|++|++............+.+++......... +++. ...... ..+....+..
T Consensus 57 ~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv 136 (472)
T TIGR00769 57 AVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYV 136 (472)
T ss_pred HHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH
Confidence 334478889999999999988777666666665555543221110 0000 000000 0011111111
Q ss_pred eeeeeeccccc-chhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 296 VVISFSLGVGA-IPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 296 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
..-.++....+ +.|++++|.+.+++-.+-.++....+++|..+++.+..++.+
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333333 668999999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.00083 Score=62.26 Aligned_cols=146 Identities=16% Similarity=0.106 Sum_probs=0.5
Q ss_pred HHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCc-
Q 016431 203 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS- 279 (389)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 279 (389)
......+.+-++.+++..+ ......-++.++..++..++.+|..|-+.+-.+.++++++.+++.+..........+.
T Consensus 21 ~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~ 100 (539)
T PF03137_consen 21 YVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEA 100 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccc
Confidence 3344455555667777666 5556667888888888889999988888888899999999888876544432210000
Q ss_pred -----------c---------------------chhHHHHHHHHHhhheeeee-ecccccchhhhhccccccchhhhhhh
Q 016431 280 -----------R---------------------FYSILGILSLVGLVTVVISF-SLGVGAIPWVIMSEILPVNIKSLAGS 326 (389)
Q Consensus 280 -----------~---------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 326 (389)
. .........++.+.-+..+. +....++..+|+-|.++++..+...|
T Consensus 101 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiG 180 (539)
T PF03137_consen 101 SNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIG 180 (539)
T ss_dssp ---------------------------------------------------SSS--------------------------
T ss_pred cccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchh
Confidence 0 00001111222222222222 23346677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhh
Q 016431 327 VATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 327 ~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
+......+|-++|-.+++...+
T Consensus 181 i~~~~~~lGPa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 181 ILYAMSILGPALGFLLGSFCLR 202 (539)
T ss_dssp ----------------------
T ss_pred hhhHHhhccHHHHHHHHHHHHh
Confidence 9999999988888888776653
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0057 Score=53.88 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhh----hchhHHHHHH-hHHH
Q 016431 186 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDK----AGRRLLLLIS-SSGM 258 (389)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~-~~~~ 258 (389)
.+.........++. +..-..|.+.+.++.|.+... .......+.+++.+++.|..+|| +||||..+.. ....
T Consensus 34 li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i 112 (498)
T KOG0637|consen 34 LISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLI 112 (498)
T ss_pred HHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHH
Confidence 33333333333333 344456667777788876544 44445567888899999999996 6777765544 4445
Q ss_pred HHHHHHHHHHHhhcccccCCcc--chhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhh-hhhHHHHHHHHH
Q 016431 259 AASFFLVSVAFFLEGFVSEDSR--FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSL-AGSVATLANWLV 335 (389)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~g 335 (389)
.++..+++..........++.. .........++++.+.-........|.- ++..|+..++.+.+ +++.......+|
T Consensus 113 ~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 113 AVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMAVG 191 (498)
T ss_pred HHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHHhc
Confidence 5555555554433333222221 2233344455555555555444555555 88889888777777 999999999999
Q ss_pred HHHHHHHhHH
Q 016431 336 SWIVTMTANF 345 (389)
Q Consensus 336 ~~~~~~~~g~ 345 (389)
+.+|-...++
T Consensus 192 nvLGY~~g~y 201 (498)
T KOG0637|consen 192 NVLGYALGSY 201 (498)
T ss_pred ceeeeecccc
Confidence 9888777764
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.043 Score=51.97 Aligned_cols=164 Identities=12% Similarity=0.003 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHH
Q 016431 185 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 262 (389)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 262 (389)
.++....+..+.+......+......+-+..+++..+ .+....-++..+......+...|..|-+.+-.+.++++++.
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 3444444444444433344444445555566776555 33344557777888888888889888888888999999988
Q ss_pred HHHHHHHhhcccccC---------------------------------Ccc---chhHHHHHHHHHhhheeeeeeccccc
Q 016431 263 FLVSVAFFLEGFVSE---------------------------------DSR---FYSILGILSLVGLVTVVISFSLGVGA 306 (389)
Q Consensus 263 ~~~~~~~~~~~~~~~---------------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (389)
++..+.-...+.... +.. ......+..++..-++.+....-..+
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 888766333211100 000 01111232333322333333445567
Q ss_pred chhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 307 IPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
+..+|+-|...+++.....|+..+...+|-++|-.++++...
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 778999999999999999999999999999888888887765
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.32 Score=45.27 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=34.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHhh--hccchhhHHHHHHHHHHHHHH
Q 016431 321 KSLAGSVATLANWLVSWIVTMTANFLLD--WSSGGTFLIYGIVCAFTVAFV 369 (389)
Q Consensus 321 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~--~~~~~~~~~~~~~~~~~~~~~ 369 (389)
.+...|-....+.+|+.+|+.+.+++.- .+.....++.+.+.++.+++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999998765 455555555555554444333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.53 Score=42.46 Aligned_cols=148 Identities=10% Similarity=-0.059 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHH----HhhcccccCCccchhHHHHHHHHHhhhee
Q 016431 222 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA----FFLEGFVSEDSRFYSILGILSLVGLVTVV 297 (389)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (389)
.....-.+..++.++..|.+.||..|.+......+..-++..+-... ......... ...................
T Consensus 42 iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 42 IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQ-SSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccc-cchHHHHHHHHHHHHHHHH
Confidence 44444567778888999999999999887766655443333222221 111111000 0111111111111111111
Q ss_pred eeeeccc-ccchhhhhcccc--ccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHH
Q 016431 298 ISFSLGV-GAIPWVIMSEIL--PVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVS 370 (389)
Q Consensus 298 ~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
-..+.+. ..+---++..+. +++.....++.+.-+-.+...++|.+.|.+.+ .+......+.++...+...+=+
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEY 197 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 011111122222 34556677777777777899999999999988 5554445555555555444433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.05 Score=48.97 Aligned_cols=96 Identities=21% Similarity=0.346 Sum_probs=75.1
Q ss_pred hhhchHHHHh---hhhhhhHHHHhhHHHHHHHHHHHhcc------------------chhHHHHHHHHhhhccccccccc
Q 016431 3 GAIASGQIAE---YIGRKGSLMIAAVPNIIGWLIISFSK------------------DSSFLFMGRLLEGFGVGVISYTV 61 (389)
Q Consensus 3 g~~~~g~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~~~r~l~G~~~~~~~~~~ 61 (389)
++.+.+.+++ ++||++.+.++..+..++.++.-... ++...++.-++.|++.+......
T Consensus 295 ~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~ 374 (461)
T KOG3098|consen 295 GGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQR 374 (461)
T ss_pred HHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHH
Confidence 4455666665 58999999999999998888876641 35567778899999999999999
Q ss_pred ceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 62 PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 62 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
+.++.+.. +++|..+.++.-.-..++..++-......
T Consensus 375 ~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 375 YVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999 66788888888888887777665555443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.3 Score=32.45 Aligned_cols=65 Identities=15% Similarity=-0.027 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHH
Q 016431 203 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 267 (389)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 267 (389)
..+..+|...++.+++..+ .......++.++|.+...++.++.++++.+..+.+...+....+++
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4555778888888888766 6667778999999999999999888888888888888877777764
|
Note that many members are hypothetical proteins. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.2 Score=44.08 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=43.8
Q ss_pred hhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc---------chHHHHHhhhH
Q 016431 40 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---------NWRVLAVLGVL 110 (389)
Q Consensus 40 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~---------~wr~~f~~~~~ 110 (389)
+...++.-.+.+.+.|..........++. |+|.-. -+..+.+++.++...+.-.. +=..-|.+..+
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytq----avm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~ 191 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQ----AVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTV 191 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHH----HHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHH
Confidence 45566667778888877777766665554 444322 22333333333332222111 22234455555
Q ss_pred HHHHHHHHHhcccCCch
Q 016431 111 PCTLLIPGLFFIPESPR 127 (389)
Q Consensus 111 ~~~~~~~~~~~~~e~p~ 127 (389)
..+++++.+..+|..|-
T Consensus 192 ~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 192 ILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHhhcchH
Confidence 66666666666776663
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.36 Score=41.11 Aligned_cols=130 Identities=20% Similarity=0.091 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCCCC----ccHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccc
Q 016431 206 FYSSNIFANAGISS----SNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRF 281 (389)
Q Consensus 206 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (389)
...+.+..+.+.+. .........+...++.+..|.+.||.|||+....+......+.........
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~----------- 91 (338)
T COG0477 23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN----------- 91 (338)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-----------
Confidence 34444444444433 225555556777777799999999999997766666543333222221100
Q ss_pred hhHHHHHHHHHhhheeeeeecccccchhhhhcccccc-chhhhhhhHHHH-HHHHHHHHHHHHhHHHhhh
Q 016431 282 YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPV-NIKSLAGSVATL-ANWLVSWIVTMTANFLLDW 349 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~ 349 (389)
.............. .......+....+..|..|+ +.|+...+.... ...++..++|.+.+.+.+.
T Consensus 92 --~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 92 --VGLALLLILRLLQG-LGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred --chHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111111111 11123456667888999887 678888888877 5778888888777766654
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.024 Score=37.10 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=21.9
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHH
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPN 27 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~ 27 (389)
++++++|.++||+++++..+....+.
T Consensus 50 ~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 50 LAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 67899999999999999887766544
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.019 Score=47.86 Aligned_cols=111 Identities=9% Similarity=0.105 Sum_probs=64.4
Q ss_pred hHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHHHHH
Q 016431 7 SGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT 86 (389)
Q Consensus 7 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 86 (389)
.....||+---+=..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++-+. +++ ...+-+..+.+
T Consensus 82 ~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y~~----~~i~~WSSGTG 156 (409)
T KOG3880|consen 82 APFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-YPS----IVIAGWSSGTG 156 (409)
T ss_pred chhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-CCC----ceeccccCCCC
Confidence 3445566543333445556677788888999999998888888888887776555444332 222 23444444444
Q ss_pred HHHHHHHHhcccc------chHHHHHhhhHHHHHHHHHHhcc
Q 016431 87 IGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFI 122 (389)
Q Consensus 87 lG~~l~~~i~~~~------~wr~~f~~~~~~~~~~~~~~~~~ 122 (389)
...++|..--..+ +-|...++...+.++..+..+++
T Consensus 157 gAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 157 GAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred cchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 4445554333222 55666666655554444444443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.045 Score=48.33 Aligned_cols=67 Identities=27% Similarity=0.232 Sum_probs=59.8
Q ss_pred HHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 33 IISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 33 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
..-+.++.|..++.-+..|+..|..++.....+.|-.|+++|..+++....+-++|..++.+++..+
T Consensus 328 ~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 328 WYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344578899999999999999999999999999999999999999999999999999999888665
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.2 Score=39.02 Aligned_cols=34 Identities=6% Similarity=-0.047 Sum_probs=20.6
Q ss_pred hhhccccccchhhhhhhHHHHHHHHHHHHHHHHh
Q 016431 310 VIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 343 (389)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 343 (389)
.+.-....++..|-++.........|.+++..+.
T Consensus 156 gwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 156 GWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 4444556667777666666666666666655544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.29 Score=43.56 Aligned_cols=117 Identities=13% Similarity=-0.014 Sum_probs=66.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccc---hhhhhh
Q 016431 249 LLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN---IKSLAG 325 (389)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 325 (389)
+.+..+.++..++.+++.+........+ ........+++.++..+. .+.=|....+..|.++++ +|.+.+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~------~~~~~~~~~gL~lia~G~-G~~K~ni~~~~~dq~~~~~~~~~~~~F 74 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPS------GIQLGLFYIGLALIAVGT-GGIKPNISPFGADQYDEDDDSRRDSFF 74 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------------CHHHHHHHHHHHHH-HCCHHHHHHHHHHCSSTTTTTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhh------hHHHHHHHHHHHHHHhcc-ccccccHHHHHHHHhcccchhhhhhhH
Confidence 4567777788888777665433322200 011122333333333332 334455558888888766 356777
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhc
Q 016431 326 SVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWV 373 (389)
Q Consensus 326 g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (389)
.......++|+.+++.+.+++.+ .++...|.+.++ +.+.+++....-
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~-~~~~~~~~f~~~ 122 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAI-GMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHH-HHHHHHHHHHCC
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHH-HHHHHHHHHHhC
Confidence 78899999999999999999988 444444444444 444444444433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.28 E-value=2.4 Score=36.36 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=64.9
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCc--ccc-----
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMR----- 74 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r----- 74 (389)
.++++.+.+..++|-|.++.++...+...-. .=+=+.+..++-.-...|++.+..+..--+|+++.-.. ++|
T Consensus 73 ~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~ 151 (390)
T KOG3097|consen 73 DSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAG 151 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhcc
Confidence 3456677889999999999998887765332 22336777888999999999999999999998877643 233
Q ss_pred ----cchhhhhHHHHHHHHHHHHH
Q 016431 75 ----GSLGSVNQLSVTIGIMLAYL 94 (389)
Q Consensus 75 ----~~~~~~~~~~~~lG~~l~~~ 94 (389)
.+..+.+.+.+..+...|..
T Consensus 152 ~~~~~~ffg~Ffii~~~~qv~gn~ 175 (390)
T KOG3097|consen 152 DGMKVRFFGEFFIIFQCAQVWGNL 175 (390)
T ss_pred CceeeeehhHHHHHHHHHHHHHHH
Confidence 34455555555444444433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.64 E-value=11 Score=35.01 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHh-hcccccCCccc----------hhH----HHHHHHHHhh
Q 016431 230 VQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFF-LEGFVSEDSRF----------YSI----LGILSLVGLV 294 (389)
Q Consensus 230 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~----~~~~~~~~~~ 294 (389)
..++...+..++.+++++.++...........+.++++... ..+..+++... ..+ ...+....+.
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 44566777889999999998877666666655555555432 11111111100 000 0001111111
Q ss_pred heeeeeeccccc-chhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 016431 295 TVVISFSLGVGA-IPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 348 (389)
Q Consensus 295 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 348 (389)
+..-.++....+ +.|.+++|.++.++..+..++.....++|..+++.+..++.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222223 458999999999999999999999999999999888877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.26 Score=32.78 Aligned_cols=44 Identities=9% Similarity=0.147 Sum_probs=37.9
Q ss_pred CchhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHH
Q 016431 1 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLF 44 (389)
Q Consensus 1 lig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 44 (389)
++|++...++.++..+++.+..+++...+..+.+++.++++.+.
T Consensus 41 L~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 41 LVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 35778888888888889999999999999999999999887653
|
Note that many members are hypothetical proteins. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.28 E-value=14 Score=35.14 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=88.1
Q ss_pred HHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC-----
Q 016431 207 YSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED----- 278 (389)
Q Consensus 207 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 278 (389)
...+.....+.+... ..............+.+++++|. .||-+.+.++..+..++..++..........+..
T Consensus 60 lv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~ 139 (571)
T KOG1237|consen 60 LVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKP 139 (571)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCC
Confidence 333444444554433 22233344455667889999998 5888888888888888877777665555432211
Q ss_pred ----ccc-hhHHHHHHHHHhhheeeeeecccccchhhhhcccccc----chhh--hhhhHHHHHHHHHHHHHHHHhHHHh
Q 016431 279 ----SRF-YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPV----NIKS--LAGSVATLANWLVSWIVTMTANFLL 347 (389)
Q Consensus 279 ----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~g~~~~~~~~g~~~~~~~~g~l~ 347 (389)
... ..........++.....+ ..+.-|...++-+|-+++ +.+. .-+.......+.|..++..+.-+.-
T Consensus 140 ~~~~c~~~s~~q~~~~~~~l~lia~G-~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq 218 (571)
T KOG1237|consen 140 GGNVCESPSKLQLAVLYGALYLIALG-AGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ 218 (571)
T ss_pred CCCcccCcchHHHHHHHHHHHHheec-cCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence 011 111112222233322222 344456666888888872 2222 4566667777888888888877775
Q ss_pred h-hccchhhHHHHHHHHHH
Q 016431 348 D-WSSGGTFLIYGIVCAFT 365 (389)
Q Consensus 348 ~-~~~~~~~~~~~~~~~~~ 365 (389)
+ .++...+-+..+...++
T Consensus 219 ~~~~w~lgf~i~~~~~~la 237 (571)
T KOG1237|consen 219 DNVGWKLGFGIPTVLNALA 237 (571)
T ss_pred hcccceeeccHHHHHHHHH
Confidence 5 34434444444444433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.44 Score=39.38 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=24.8
Q ss_pred HhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 016431 212 FANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLL 251 (389)
Q Consensus 212 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 251 (389)
++++++...+ ...+......++...+.|-+.||.|||+.-
T Consensus 64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKrac 105 (454)
T KOG4332|consen 64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC 105 (454)
T ss_pred ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccce
Confidence 3445555444 222333344566677788999999999853
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.28 E-value=18 Score=32.28 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=26.6
Q ss_pred hhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhc
Q 016431 308 PWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWV 373 (389)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (389)
.+...+ .+|++.....++=.+.++.+.+...-..-....| ......++..+.+..+.+++++...
T Consensus 138 ~~G~a~-~~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l 203 (406)
T KOG1479|consen 138 LYGLAG-LFPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVL 203 (406)
T ss_pred hhhhhh-cCCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHh
Confidence 335554 5666655444333333333322222222212222 2233345555555555555555533
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.37 E-value=1.1 Score=38.03 Aligned_cols=76 Identities=24% Similarity=0.142 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 24 AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
-+++.+...+..+.++.+..++.-+.-|+-.|..++...--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus 326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 3445555666677899999999999999988888887777777778889999999999999999999999888765
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.51 E-value=21 Score=29.38 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhchhHHHHHHhHHH
Q 016431 233 VATGVNTWLMDKAGRRLLLLISSSGM 258 (389)
Q Consensus 233 ~~~~~~g~l~d~~~~~~~~~~~~~~~ 258 (389)
+..+-+-.++.|+..|.+.+.+.++.
T Consensus 255 lAVigGk~lAskIS~rtVt~~ggi~F 280 (294)
T KOG2881|consen 255 LAVIGGKYLASKISVRTVTLIGGILF 280 (294)
T ss_pred HHHhhhHHHhhhheeEEEEEecchhH
Confidence 33444456778888776665554443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.20 E-value=4.4 Score=37.93 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=36.8
Q ss_pred HHHHHHhhhcccccccccceeeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc
Q 016431 44 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 99 (389)
Q Consensus 44 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~ 99 (389)
...-++.|+..|+..|....+..+... ++-++..|-......+|.++|.++.+++
T Consensus 114 ~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 114 YVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 334456778788888877666554322 2245667777888888888888777766
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 389 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-38 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 389 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.94 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.93 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.44 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.43 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.33 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.27 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.2 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.14 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.96 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=330.55 Aligned_cols=371 Identities=31% Similarity=0.525 Sum_probs=291.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHH------------------hccchhHHHHHHHHhhhcccccccccce
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS------------------FSKDSSFLFMGRLLEGFGVGVISYTVPV 63 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 63 (389)
+|++++|+++||+|||++++++.+++.+++++++ +++|+++++++|+++|++.|+..+....
T Consensus 70 iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~ 149 (491)
T 4gc0_A 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPM 149 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999998 4789999999999999999999999999
Q ss_pred eeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc------------chHHHHHhhhHHHHHHHHHHhcccCCchhhHh
Q 016431 64 YIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 131 (389)
Q Consensus 64 ~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 131 (389)
+++|+.|+++|++..++.+.+..+|.++++.++... +||+.+.+..+..++..+..+++||||+|+..
T Consensus 150 ~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~ 229 (491)
T 4gc0_A 150 YIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMS 229 (491)
T ss_dssp HHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHH
T ss_pred HHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHH
Confidence 999999999999999999999999999988877543 58899999988888888889999999999999
Q ss_pred cCChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHH
Q 016431 132 MGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI 211 (389)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (389)
+++.+++++.+++..+.+...+...+..+... ++++....... ...++.........+....+.+.+.+|.+.+
T Consensus 230 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4gc0_A 230 RGKQEQAEGILRKIMGNTLATQAVQEIKHSLD---HGRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEV 303 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCchhHHHHhHHHhcCCchhHHHHHHHHHHHH---hhhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence 99999999888876553322211111111111 11111111111 2233455566666677777788889999998
Q ss_pred HhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHH
Q 016431 212 FANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILS 289 (389)
Q Consensus 212 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (389)
.++.+.+... ......++..+++.++.+++.||+|||+.+..+...+.++.+.++........ ....
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~ 372 (491)
T 4gc0_A 304 FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-----------GIVA 372 (491)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------HHHH
T ss_pred HHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-----------hHHH
Confidence 8887765544 44556678889999999999999999999998888888877766654332211 1222
Q ss_pred HHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-------hccchhhHHHHHHH
Q 016431 290 LVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-------WSSGGTFLIYGIVC 362 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-------~~~~~~~~~~~~~~ 362 (389)
+.....+..++..+..|+.+.+.+|.+|++.|+++.|+.+..+++++.+++.+.+.+.+ .+....++++++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 373 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33333344455667778888999999999999999999999999999999998877654 23445678888888
Q ss_pred HHHHHHHHhhcccCCCCCHHHHhhhhC
Q 016431 363 AFTVAFVSLWVPETKGRSLEEIQFSFR 389 (389)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (389)
++..++.++++||||+|+.||+|+.||
T Consensus 453 ~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 453 VLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 888888899999999999999999875
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=265.86 Aligned_cols=338 Identities=14% Similarity=0.139 Sum_probs=232.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHh----ccchhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
++++++|+++||+|||++++++.++.+++.+++++ ++|++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus 77 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 156 (451)
T 1pw4_A 77 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 156 (451)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHH
Confidence 57899999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcccc----c-hHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcc
Q 016431 78 GSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTD 151 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~----~-wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
+++.+.+.++|.+++|.+++.+ + ||+.|++.++..++. ++..+++||+|++...+++.++. ++
T Consensus 157 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 225 (451)
T 1pw4_A 157 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-----------ND 225 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-----------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-----------cc
Confidence 9999999999999999999875 7 999999988877765 44556789887643222111100 00
Q ss_pred hhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHHH
Q 016431 152 ISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLG 228 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 228 (389)
.+ + +.+++.+++...++...++.++++..+...+ ..+...........+.|.++++ .|.+... .......
T Consensus 226 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 298 (451)
T 1pw4_A 226 YP-D--DYNEKAEQELTAKQIFMQYVLPNKLLWYIAI----ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 298 (451)
T ss_dssp ----------------CCTHHHHHHTSSCHHHHHHHH----HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred cc-c--cchhhhhcccccccchHHHHHcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 00 0 0000000011111111344444443333322 2222333355667778888876 6776554 5566667
Q ss_pred HHHHHHHHHHHHHHhhh--chhHHHHHHhHHHH-HHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccc
Q 016431 229 VVQVVATGVNTWLMDKA--GRRLLLLISSSGMA-ASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVG 305 (389)
Q Consensus 229 ~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (389)
++.+++.++.+++.||+ +||+.+..+..+.. ++.+++.. .+.+ ............+.+ .....
T Consensus 299 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------~~~~~~~~~~~~g~~-~~~~~ 364 (451)
T 1pw4_A 299 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-------NPAG------NPTVDMICMIVIGFL-IYGPV 364 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-------CCTT------CHHHHHHHHHHHHHH-HTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-------hccc------CHHHHHHHHHHHHHH-HhchH
Confidence 88999999999999999 99988776665554 33333221 0000 011111122222211 22334
Q ss_pred cchhhhhccccccchhhhhhhHHHHHHHH-HHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHh
Q 016431 306 AIPWVIMSEILPVNIKSLAGSVATLANWL-VSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSL 371 (389)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
+....+..|.+|++.|+++.|+.+...++ |..++|.+.|.+.+ .++...++..+++..+..++...
T Consensus 365 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 365 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 55568899999999999999999999999 99999999999998 45555566666655555444443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=245.85 Aligned_cols=303 Identities=14% Similarity=0.110 Sum_probs=221.0
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHH---HhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLG 78 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 78 (389)
++++++|+++||+|||++++++.++.+++.+++ +++++++.+++.|++.|++.+...+...+++.|++|+++|++++
T Consensus 76 i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 155 (438)
T 3o7q_A 76 IIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRL 155 (438)
T ss_dssp TTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred HHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHH
Confidence 578999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcccc-----c-------------------------hHHHHHhhhHHHHHHHHHHhc--ccCCc
Q 016431 79 SVNQLSVTIGIMLAYLLGLFV-----N-------------------------WRVLAVLGVLPCTLLIPGLFF--IPESP 126 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~-----~-------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p 126 (389)
++.+.+.++|.+++|.+++.+ + ||+.|++.++..++..+..++ .||++
T Consensus 156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~ 235 (438)
T 3o7q_A 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 999999999999999999877 2 999998777666555444333 45543
Q ss_pred hhhHhcCChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHH
Q 016431 127 RWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 206 (389)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (389)
+.. + +++++++.+.+++++++++..+...+...+.... ......
T Consensus 236 ~~~---~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 279 (438)
T 3o7q_A 236 SDN---H-----------------------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGA----QTACWS 279 (438)
T ss_dssp TTC---C-----------------------------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH----HHHHHH
T ss_pred ccc---c-----------------------------ccccccchhhhHHHHHhChHHHHHHHHHHHHHHH----HHHHHH
Confidence 210 0 0011122234456677766655544443333332 345556
Q ss_pred HHHHH-Hhhc-CCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccch
Q 016431 207 YSSNI-FANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFY 282 (389)
Q Consensus 207 ~~~~~-~~~~-~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (389)
+.+.+ .++. |.+... .......++.+++.++.+++.||++||+.+..+..+..++.+++... .
T Consensus 280 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~---------- 346 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---G---------- 346 (438)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---C----------
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---C----------
Confidence 66766 6654 776554 55566678889999999999999999999888887777665554421 0
Q ss_pred hHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hc-cchhhHHHH
Q 016431 283 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS-SGGTFLIYG 359 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~-~~~~~~~~~ 359 (389)
.. .......+...+ .....|..+++..|.+|++ ++.+.++.. .+.++..++|.+.|.+.| .+ ....+.+.+
T Consensus 347 --~~-~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 419 (438)
T 3o7q_A 347 --GH-VGLIALTLCSAF-MSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA 419 (438)
T ss_dssp --HH-HHHHHHHHHHHH-HTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHH
T ss_pred --Cc-HHHHHHHHHHHH-HHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 00 111112222222 2334566778888999977 888888777 677999999999999999 44 444555433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=236.21 Aligned_cols=367 Identities=14% Similarity=0.107 Sum_probs=221.2
Q ss_pred chhhchHHHHhh-hhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCccc--ccchh
Q 016431 2 VGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM--RGSLG 78 (389)
Q Consensus 2 ig~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~ 78 (389)
++++++|+++|| +|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++ |++++
T Consensus 69 ~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 148 (491)
T 4aps_A 69 LSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGF 148 (491)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeee
Confidence 578999999999 899999999999999999999999999999999999999999999999999999999988 77788
Q ss_pred hhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcc-cCCch----hhHhcCChhHHHHHHHH-----
Q 016431 79 SVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI-PESPR----WLAKMGMTEDFESSLQV----- 144 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~-~e~p~----~~~~~~~~~~~~~~~~~----- 144 (389)
++++.+.++|..++|.+++.+ +||+.|++.++..++..+..++. |+..+ ....+.+.++.++..+.
T Consensus 149 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 228 (491)
T 4aps_A 149 SIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAV 228 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHH
Confidence 889999999999999999887 89999999877666654444322 22111 00111122222222111
Q ss_pred ----------HhcCCcchhHHHHHHHH--------HhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHH
Q 016431 145 ----------LRGFDTDISIEVNEIKR--------SVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 206 (389)
Q Consensus 145 ----------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (389)
......+.+........ ......++......+..+............+..... .....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 304 (491)
T 4aps_A 229 AGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIE----EQGSV 304 (491)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHH----GGGGT
T ss_pred HHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHH----hhccH
Confidence 00111111110000000 000000000000011111111111222222222222 22233
Q ss_pred HHHHHHhh-cCCC--CccHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-----HHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 207 YSSNIFAN-AGIS--SSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLL-----ISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 207 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
+.+.+.++ .+.+ ..........+..+++.++.+++.||++||+... .+..+..++..++......... +.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 383 (491)
T 4aps_A 305 VLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT-SGK 383 (491)
T ss_dssp HHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC-CTT
T ss_pred HHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-CCC
Confidence 33444433 3333 2335566677888888999999999999886544 5555555555544433211110 000
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIY 358 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 358 (389)
.+ .........+...+ .....+..+.+..|.+|++.|+++.|+.+....+|..++|.+.+.+.+.+....+..+
T Consensus 384 ~~-----~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 457 (491)
T 4aps_A 384 VS-----PLWLVGSWALVILG-EMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYF 457 (491)
T ss_dssp CC-----THHHHHHHHHHHHH-HHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHT
T ss_pred cc-----HHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 01 11111222222222 2233566678999999999999999999999999999999999999887777778777
Q ss_pred HHHHHHHHHHHHhhcccCCCC
Q 016431 359 GIVCAFTVAFVSLWVPETKGR 379 (389)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ 379 (389)
++++.+..++.+...++.+++
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 458 GLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777766666665554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-30 Score=230.85 Aligned_cols=305 Identities=14% Similarity=0.125 Sum_probs=211.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+..+.+++.++.++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.
T Consensus 50 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (375)
T 2gfp_A 50 VSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLL 129 (375)
T ss_dssp HHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHH-HHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016431 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+.+.++|..++|.+++.+ +||+.|++.++..++..+ ..+++||+|++..
T Consensus 130 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 183 (375)
T 2gfp_A 130 NMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA-------------------------- 183 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC--------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc--------------------------
Confidence 999999999999999887 899999988887777655 5566788764210
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHHHHHHHH
Q 016431 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~ 233 (389)
++++.+.++++.++++..+...+...+... .......+.|.+.++ .|.++.. .......++.++
T Consensus 184 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 250 (375)
T 2gfp_A 184 ---------PRTRLLTSYKTLFGNSGFNCYLLMLIGGLA----GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFF 250 (375)
T ss_dssp ---------CCCCTTTCSTHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ---------ccccHHHHHHHHhcCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 001122334455555544443333333222 233444555555444 4554433 445556788888
Q ss_pred HHHHHHHHHhhhchhHHHHHHhHH-HHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhh
Q 016431 234 ATGVNTWLMDKAGRRLLLLISSSG-MAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 312 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
+.++.+++.||.+++. ..+... ...+...+...... ....+.......+...+. ....+....+.
T Consensus 251 ~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~ 316 (375)
T 2gfp_A 251 GAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFG-----------VMNVWTLLVPAALFFFGA-GMLFPLATSGA 316 (375)
T ss_dssp HHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHH-----------HHHHHHHHHHHHHHHHHH-HHTSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc-----------cccHHHHHHHHHHHHHHH-HHhhHHHHHHH
Confidence 8999999999988732 222222 11111111111000 001111222222222222 23456666889
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHH
Q 016431 313 SEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360 (389)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 360 (389)
.|..| ++|+++.|+.+...++|..++|.+.|.+.+.+.+...+....
T Consensus 317 ~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 317 MEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99998 889999999999999999999999999988554444444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-28 Score=218.74 Aligned_cols=333 Identities=12% Similarity=0.047 Sum_probs=192.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHH---HHHHhccch-hHHHHHHHHhhhcccccccccceeeeeccCc--cccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGW---LIISFSKDS-SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRG 75 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~-~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~ 75 (389)
++++++|+++||+||||+++++..+.+++. ....+++.. ..+...+.+.|++.+...+.....+.++.++ ++|+
T Consensus 58 i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 137 (417)
T 2cfq_A 58 LFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN 137 (417)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc
Confidence 578999999999999999999888776532 222232221 1234566777776666555555555555543 3557
Q ss_pred chhhhhHHHHHHHHHHHHHhcccc---chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcch
Q 016431 76 SLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI 152 (389)
Q Consensus 76 ~~~~~~~~~~~lG~~l~~~i~~~~---~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (389)
...+......++|..++|.+++.+ +||+.|++.++..++..+..++.+|+|+.. .+.++ + +
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~-~- 201 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSS---ATVAN-----------A-V- 201 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS---SCSSS-----------S-S-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcccccc---ccccc-----------c-c-
Confidence 777777777788888888888876 799999988776655555545544433210 00000 0 0
Q ss_pred hHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhc-CCC---Ccc--HHHHH
Q 016431 153 SIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GIS---SSN--VATFG 226 (389)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~--~~~~~ 226 (389)
++++++....++++.++++..+...+....... .+.....+.|.++.+. +.. ... .....
T Consensus 202 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 267 (417)
T 2cfq_A 202 ----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSC----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTM 267 (417)
T ss_dssp ----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHH
T ss_pred ----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHH
Confidence 000001111233455555544333322221111 1222223344444332 211 111 33344
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeeccccc
Q 016431 227 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGA 306 (389)
Q Consensus 227 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (389)
..+..+++.++.+++.||++||+.+..+..+.+++...+... . ..........+..... ....+
T Consensus 268 ~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~l~~~~~-~~~~~ 331 (417)
T 2cfq_A 268 GELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---T------------SALEVVILKTLHMFEV-PFLLV 331 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---C------------SHHHHHHHTTHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---c------------cHHHHHHHHHHHHHHH-HHHHH
Confidence 456778889999999999999998887776666554433210 0 0111111111111111 11223
Q ss_pred chhhhhccccccchhhhhhhHH-HHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 016431 307 IPWVIMSEILPVNIKSLAGSVA-TLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRS 380 (389)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (389)
..+.+..|.+|++.|+++.+.. +..+.+|+.++|.+.|.+.+ .+....+.+.+++..+..++.....+|+++.+
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 3458999999999999999994 88899999999999999988 44445566666666655555555556554443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-26 Score=212.05 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=108.5
Q ss_pred chhhchHHHHhhh-hhhhHHHHhhHHHHHHHHHHHhcc-chhHHHHHHHHhhhcccccccccceeeeeccCcccccchhh
Q 016431 2 VGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 79 (389)
Q Consensus 2 ig~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 79 (389)
+++++.|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+
T Consensus 69 ~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 148 (524)
T 2xut_A 69 FFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK 148 (524)
T ss_dssp HTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHH
Confidence 5789999999999 999999999999999999999999 99999999999999999999999999999999999987766
Q ss_pred h---hHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhc
Q 016431 80 V---NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 121 (389)
Q Consensus 80 ~---~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~ 121 (389)
. .+.+.++|..++|.+++.+ +||+.|++.++..++..+..++
T Consensus 149 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 149 AFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6 8999999999999999877 8999999988877666554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=120.84 Aligned_cols=176 Identities=11% Similarity=-0.030 Sum_probs=122.6
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHH
Q 016431 188 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 265 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 265 (389)
....+..+.............|.+.++. .+..+ .......++..++.++.|+++||+|||+.+..+..+..++.++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 109 (451)
T 1pw4_A 31 LGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM 109 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 3333333333333445566677777777 66655 56666788899999999999999999999999998888888777
Q ss_pred HHHHh-hcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhH
Q 016431 266 SVAFF-LEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTAN 344 (389)
Q Consensus 266 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g 344 (389)
.+... ..+ ....+....+.+.+ .....+...+++.|.+|+++|+.++|+.+....+|..++|.+.+
T Consensus 110 ~~~~~~~~~------------~~~l~~~~~l~G~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 110 GFVPWATSS------------IAVMFVLLFLCGWF-QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHCHHHHSS------------SSHHHHHHHHHHHH-HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred Hhhhhcccc------------HHHHHHHHHHHHHH-hhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 64111 011 11222222222222 22344566699999999999999999999999999999999999
Q ss_pred HHhh-hc-cchhhHHHHHHHHHHHHHHHhhcccCC
Q 016431 345 FLLD-WS-SGGTFLIYGIVCAFTVAFVSLWVPETK 377 (389)
Q Consensus 345 ~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
.+.+ .+ +...+++.+++..+..++..+..||+.
T Consensus 177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 8777 55 666777777777666666666666543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-12 Score=116.58 Aligned_cols=134 Identities=13% Similarity=-0.031 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........|.+.++.+.+..+ .......++..++.++.|+++||+|||+.+..+..+..++.++........+
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~----- 116 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN----- 116 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccccc-----
Confidence 456666778888888888766 5666678888999999999999999999999999988888877633211111
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHh
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 347 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 347 (389)
....+....+.+.+. ....+...+++.|.+|+++|+.++++.+....+|..++|.+.+.+.
T Consensus 117 -------~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 117 -------YTLFLVGLFIIAAGL-GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp -------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred -------HHHHHHHHHHHHhhH-HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222222 2334556699999999999999999999999999999999999998
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=114.61 Aligned_cols=162 Identities=12% Similarity=0.131 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016431 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........|.+.++.|.++.+ .......++..++.+..|+++||+|||+.+..+..+..++..+.....
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 86 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--------- 86 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc---------
Confidence 444555667777788887666 556667888999999999999999999999988888888877766431
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHH
Q 016431 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 357 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~ 357 (389)
..........+.+.+ .....+....+..|.+|+++|+++++..+....+|..++|.+.+.+.+ .++...+.+
T Consensus 87 ------~~~~l~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 87 ------SLTVLIAASAMQGMG-TGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp ------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 111222222222222 223456667899999999999999999999999999999999999888 455556666
Q ss_pred HHHHHHHHHHHHHhhcccCCC
Q 016431 358 YGIVCAFTVAFVSLWVPETKG 378 (389)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~ 378 (389)
.++...+..+......||+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHCcccCC
Confidence 666555554445555665543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=110.83 Aligned_cols=139 Identities=7% Similarity=0.027 Sum_probs=98.1
Q ss_pred cCCCCcc--HHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHH
Q 016431 215 AGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLV 291 (389)
Q Consensus 215 ~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (389)
.|.+..+ .......++..++.++.|+++|| +|||+.+..+..+..++.++.... . .......
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~ 113 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP---F------------GASALFG 113 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC---C------------STTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh---h------------hHHHHHH
Confidence 6776655 55666788899999999999999 899999999988888877766531 0 0111222
Q ss_pred Hhhheeeeeecccccchhhhhccccccch--hhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHH
Q 016431 292 GLVTVVISFSLGVGAIPWVIMSEILPVNI--KSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAF 368 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~ 368 (389)
...+.+.+ .....+...+++.|.+|+++ |+.+.+..+....+|..++|.+.+.+.+ .++...+++.++...+..++
T Consensus 114 ~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 114 SIILIIIG-TGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 22222222 22334566699999999988 7788888999999999999999999988 55555666655544444333
Q ss_pred H
Q 016431 369 V 369 (389)
Q Consensus 369 ~ 369 (389)
.
T Consensus 193 ~ 193 (491)
T 4aps_A 193 Y 193 (491)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-10 Score=106.20 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=100.7
Q ss_pred HHHHHHHHHH-hhcC------CCCcc--HHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHhHHHHHHHHHHHHHHhhc
Q 016431 203 GVLFYSSNIF-ANAG------ISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASFFLVSVAFFLE 272 (389)
Q Consensus 203 ~~~~~~~~~~-~~~~------~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (389)
....+.+.++ ++.+ .+..+ .......++..++.++.|+++||+ |||+.+..+..+..++.++.....
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--- 106 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE--- 106 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc---
Confidence 3444444443 4566 66655 556667888899999999999999 999999988888877776665320
Q ss_pred ccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhH---HHHHHHHHHHHHHHHhHHHhh-
Q 016431 273 GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSV---ATLANWLVSWIVTMTANFLLD- 348 (389)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~- 348 (389)
...........+.+.+ .....+...+++.|.+|+++|+...+. .+...++|..++|.+.+.+.+
T Consensus 107 -----------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 107 -----------HSVQGFYTGLFLIALG-SGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp -----------SCHHHHHHHHHHHHHH-HHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred -----------ccHHHHHHHHHHHHHh-ccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0111222222222222 233456667999999999999766665 889999999999999999987
Q ss_pred hccchhhHHHHHHHHHH
Q 016431 349 WSSGGTFLIYGIVCAFT 365 (389)
Q Consensus 349 ~~~~~~~~~~~~~~~~~ 365 (389)
.++...+.+.+++..+.
T Consensus 175 ~g~~~~f~~~~~~~~~~ 191 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVA 191 (524)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 45555566555554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-11 Score=110.01 Aligned_cols=125 Identities=14% Similarity=0.065 Sum_probs=103.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhh-
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV- 80 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~- 80 (389)
++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....++.|.+|++.|+++.+.
T Consensus 274 ~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4678899999999999999999999888888888888888888888888888776667778899999999999999988
Q ss_pred hHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHH-HhcccCCc
Q 016431 81 NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESP 126 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~-~~~~~e~p 126 (389)
++....+|.+++|.+++.+ +++..|.+.++.+++..+. ....||++
T Consensus 354 ~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 4888889999999998876 7888888888777776544 44466654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=7.8e-10 Score=100.88 Aligned_cols=124 Identities=16% Similarity=0.092 Sum_probs=88.1
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc-----chhHHH-HHHHHhhhcccccccccceeeeeccCccccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-----DSSFLF-MGRLLEGFGVGVISYTVPVYIAEIAPQNMRG 75 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 75 (389)
++.++.+++.||+|||+.++.+.....++.+..+... +...+. ..-+..+++. ...+....+.+|.+|.+.|+
T Consensus 327 ~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~ 405 (491)
T 4gc0_A 327 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRG 405 (491)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHH
T ss_pred HHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHH
Confidence 4678899999999999999999888888777665431 111122 1222222222 33466778899999999999
Q ss_pred chhhhhHHHHHHHHHHHHHhcccc----------chHHHHHhhhHHHHHH-HHHHhcccCCc
Q 016431 76 SLGSVNQLSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTLL-IPGLFFIPESP 126 (389)
Q Consensus 76 ~~~~~~~~~~~lG~~l~~~i~~~~----------~wr~~f~~~~~~~~~~-~~~~~~~~e~p 126 (389)
+++++......+|.++++.+...+ ++...|++.+.++++. ++.++++||++
T Consensus 406 ~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 406 KALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 999999999888888877655433 4556777777777666 45567899985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 389 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 51.2 bits (121), Expect = 1e-07
Identities = 50/391 (12%), Positives = 110/391 (28%), Gaps = 26/391 (6%)
Query: 1 MVGAIASGQIAEYIGRK----GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGV 56
G +++ + L++AA + + + + +F+ L G+ G+
Sbjct: 73 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM 132
Query: 57 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLI 116
+ Q RG + SV + +G + LL L +
Sbjct: 133 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL-------GMAWFNDWHAA 185
Query: 117 PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAE 176
+ L M D S + + + +++ + +
Sbjct: 186 LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYV 245
Query: 177 LKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATG 236
L K W+ + + + +L+ GI + + S+ A F + T
Sbjct: 246 LPNKLLWYIAIANVFVYLLRY--GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTL 303
Query: 237 VNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTV 296
+ W+ DK R M V + + + V
Sbjct: 304 LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-----------MNPAGNPTVDMICMIV 352
Query: 297 VISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVT--MTANFLLDWSSGGT 354
+ G + + E+ P A L +L + + + + G
Sbjct: 353 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 412
Query: 355 FLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 385
F++ V + + + K R + +Q
Sbjct: 413 FMVMIGGSILAVILLIVVMIGEKRRHEQLLQ 443
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 389 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.42 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.25 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.7e-34 Score=254.96 Aligned_cols=348 Identities=14% Similarity=0.100 Sum_probs=223.2
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhc----cchhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
++++++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|+++
T Consensus 74 ~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~ 153 (447)
T d1pw4a_ 74 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 153 (447)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccc
Confidence 578999999999999999999999999999999876 4788999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcccc-----chHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcc
Q 016431 78 GSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTD 151 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~-----~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
+++.+.+.++|..+++.++... +||+.|++.+++.++. ++.+.+.+|+|+.......+++
T Consensus 154 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 219 (447)
T d1pw4a_ 154 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-------------- 219 (447)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------------
T ss_pred ccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh--------------
Confidence 9999999999999998877665 8999999888776665 4455566776653222111110
Q ss_pred hhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHHH
Q 016431 152 ISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLG 228 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 228 (389)
.+...++.+++.+++....+...+..++++..+ ......+......+....+.+.++.+ .+.+... .......
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (447)
T d1pw4a_ 220 KNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLW----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 295 (447)
T ss_dssp CCC-------------CCTHHHHHHTSSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred hhhcccchhhccccccchhhHHHHHHHcCchHH----HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcch
Confidence 000000111111111122222333344433322 22222223333345556666776654 4555444 5566667
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccch
Q 016431 229 VVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIP 308 (389)
Q Consensus 229 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (389)
+..+++.++.+++.||.+|++....................... . .............. ....+..+..
T Consensus 296 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~g-~~~~~~~~~~ 364 (447)
T d1pw4a_ 296 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP----A------GNPTVDMICMIVIG-FLIYGPVMLI 364 (447)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC----T------TCHHHHHHHHHHHH-HHHTHHHHHH
T ss_pred hhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcc----c------ccHHHHHHHHHHHH-HHHHHHHHHH
Confidence 88899999999999999887654443333332222222111100 0 01111112222111 1122334556
Q ss_pred hhhhccccccchhhhhhhHHHHHHHH-HHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCCC
Q 016431 309 WVIMSEILPVNIKSLAGSVATLANWL-VSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKG 378 (389)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
..+..|.+|++.|+++.|+.+...++ |..++|.+.|.+.| .+....+.+..+...+..++.....+++++
T Consensus 365 ~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 365 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 68899999999999999999988887 45678999999998 555555666666555555555544444333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.4e-26 Score=203.23 Aligned_cols=334 Identities=12% Similarity=0.030 Sum_probs=206.9
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhH----HHHHHHHhhhcccccccccceeeeeccCc--cccc
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF----LFMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRG 75 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~ 75 (389)
++++++|+++||+||||+++++..+..++..+..+.++... .++.+.+.+.+.+...........+..++ +++.
T Consensus 58 i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (417)
T d1pv7a_ 58 LFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN 137 (417)
T ss_dssp HTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhH
Confidence 57899999999999999999999999999988888766544 34555666665555555544444444433 3456
Q ss_pred chhhhhHHHHHHHHHHHHHhcccc---chHHHHHhhhHHH-HHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcc
Q 016431 76 SLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPC-TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTD 151 (389)
Q Consensus 76 ~~~~~~~~~~~lG~~l~~~i~~~~---~wr~~f~~~~~~~-~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
+..+........+..+++.+++.+ +|+..+....... +...+..+..+|+|+....+ +
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------- 199 (417)
T d1pv7a_ 138 FEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA---N--------------- 199 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS---H---------------
T ss_pred HHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccccchhhh---h---------------
Confidence 677788888888999999888887 6666665555444 44455666677765421110 0
Q ss_pred hhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhcCCC----Ccc--HHHH
Q 016431 152 ISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGIS----SSN--VATF 225 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~ 225 (389)
++.+.+++.......+..+++..+............. ................+ ... ....
T Consensus 200 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (417)
T d1pv7a_ 200 ---------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY----DVFDQQFANFFTSFFATGEQGTRVFGYVTT 266 (417)
T ss_dssp ---------HHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ---------hhhhhcccccccccccccccccccchhhhhHHHHHHH----Hhhhccccccccccccccccchhhhccccc
Confidence 0011111112222223333333332222222222221 11222222222211111 111 3344
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccc
Q 016431 226 GLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVG 305 (389)
Q Consensus 226 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (389)
...++..++..+.+++.||.++|+.+..+..+..++.+.+... ...........+...+. ....
T Consensus 267 ~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~g~~~-~~~~ 330 (417)
T d1pv7a_ 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---------------TSALEVVILKTLHMFEV-PFLL 330 (417)
T ss_dssp HHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC---------------CCHHHHHHHHHHHHHHH-HHHH
T ss_pred ccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc---------------cccchhhHHHHHHHHHH-HHHH
Confidence 4567788889999999999999999988888877776665521 11111222222222222 2334
Q ss_pred cchhhhhccccccchhhhhhhHH-HHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 016431 306 AIPWVIMSEILPVNIKSLAGSVA-TLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLE 382 (389)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (389)
+...++..|.+|++.|+++.|+. +....+|..++|.+.|++.| .+....+++.+++..+..++..+.++++++.+.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 56668999999999999999985 56678999999999999999 6666778888888777777777777777666553
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=3.5e-13 Score=119.26 Aligned_cols=160 Identities=11% Similarity=-0.022 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCcc
Q 016431 203 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 280 (389)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (389)
.+....|. .++.|.+..+ .......++..++.++.|+++||+|||+.+..+.++..++.++.+........
T Consensus 43 ~~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~------ 115 (447)
T d1pw4a_ 43 NFALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS------ 115 (447)
T ss_dssp SHHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS------
T ss_pred HHHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhh------
Confidence 34444554 4567887777 56667788899999999999999999999999998888887776643221111
Q ss_pred chhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-h-ccchhhHHH
Q 016431 281 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-W-SSGGTFLIY 358 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~-~~~~~~~~~ 358 (389)
.....+...+.+.+ .....+....++.|.+|+++|+.++|+.+....+|..++|.+.+...+ . ++...+++.
T Consensus 116 -----~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~ 189 (447)
T d1pw4a_ 116 -----IAVMFVLLFLCGWF-QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMP 189 (447)
T ss_dssp -----SSHHHHHHHHHHHH-HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHH
T ss_pred -----HHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhh
Confidence 11112222222222 223345556899999999999999999999999999999999988776 2 344556666
Q ss_pred HHHHHHHHHHHHhhccc
Q 016431 359 GIVCAFTVAFVSLWVPE 375 (389)
Q Consensus 359 ~~~~~~~~~~~~~~~~~ 375 (389)
+.+..+..++.....++
T Consensus 190 ~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 190 AFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred hhhHHHHHHHHHHhccc
Confidence 66666666666665544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=2.6e-12 Score=111.92 Aligned_cols=124 Identities=14% Similarity=0.073 Sum_probs=108.3
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016431 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
++..+.+++.||+|||+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+...+++.|.+|+++|++..++.
T Consensus 274 ~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (417)
T d1pv7a_ 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred cchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred -HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHH-HhcccCC
Q 016431 82 -QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPES 125 (389)
Q Consensus 82 -~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~-~~~~~e~ 125 (389)
+....+|..++|.+++++ ||+..|++.+++.++..+. .+.++++
T Consensus 354 ~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 567789999999988877 8999998888777666444 4444443
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