BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016432
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SP9|A Chain A, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP9|B Chain B, 4-hydroxyphenylpyruvate Dioxygenase
Length = 445
Score = 587 bits (1512), Expect = e-168, Method: Compositional matrix adjust.
Identities = 272/364 (74%), Positives = 311/364 (85%), Gaps = 1/364 (0%)
Query: 11 KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
KLVGF FVR+NPKSD+F+V RFHH+EFWC DATN ARRFSWGLGM AKSDLSTGN V
Sbjct: 25 KLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMV 84
Query: 71 HASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAV 130
HASYLL SGDLRF+FTAPYSP +P+FDH +CRSF +SHGL R++A+
Sbjct: 85 HASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAI 144
Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK-DKANHLDFLP 189
EVEDA+ AF+ SVA+GA PSSPP++L+ IAEV+LYGDVVLRYVSYK + +FLP
Sbjct: 145 EVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLP 204
Query: 190 GFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG 249
GFE ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV FTGFH+FAEFTA+DVGT+ESG
Sbjct: 205 GFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESG 264
Query: 250 LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 309
LNS VLA+NDEMVLLP+NEPV GTKRKSQIQTYLEHNEGAG+QHLAL+SEDIFRTLREMR
Sbjct: 265 LNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMR 324
Query: 310 KRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369
KRS +GGF+FMPSPPPTYY+NLK R GDVL+D+QIK+CEELG+LVDRDDQGTLLQIFTKP
Sbjct: 325 KRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKECEELGILVDRDDQGTLLQIFTKP 384
Query: 370 VGDR 373
+GDR
Sbjct: 385 LGDR 388
>pdb|1SQD|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1TFZ|A Chain A, Structural Basis For Herbicidal Inhibitor Selectivity
Revealed By Comparison Of Crystal Structures Of Plant
And Mammalian 4- Hydroxyphenylpyruvate Dioxygenases
pdb|1TG5|A Chain A, Crystal Structures Of Plant 4-Hydroxyphenylpyruvate
Dioxygenases Complexed With Das645
Length = 424
Score = 586 bits (1511), Expect = e-168, Method: Compositional matrix adjust.
Identities = 272/364 (74%), Positives = 311/364 (85%), Gaps = 1/364 (0%)
Query: 11 KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
KLVGF FVR+NPKSD+F+V RFHH+EFWC DATN ARRFSWGLGM AKSDLSTGN V
Sbjct: 4 KLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMV 63
Query: 71 HASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAV 130
HASYLL SGDLRF+FTAPYSP +P+FDH +CRSF +SHGL R++A+
Sbjct: 64 HASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAI 123
Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK-DKANHLDFLP 189
EVEDA+ AF+ SVA+GA PSSPP++L+ IAEV+LYGDVVLRYVSYK + +FLP
Sbjct: 124 EVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLP 183
Query: 190 GFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG 249
GFE ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV FTGFH+FAEFTA+DVGT+ESG
Sbjct: 184 GFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESG 243
Query: 250 LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 309
LNS VLA+NDEMVLLP+NEPV GTKRKSQIQTYLEHNEGAG+QHLAL+SEDIFRTLREMR
Sbjct: 244 LNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMR 303
Query: 310 KRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369
KRS +GGF+FMPSPPPTYY+NLK R GDVL+D+QIK+CEELG+LVDRDDQGTLLQIFTKP
Sbjct: 304 KRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKECEELGILVDRDDQGTLLQIFTKP 363
Query: 370 VGDR 373
+GDR
Sbjct: 364 LGDR 367
>pdb|1SP8|A Chain A, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP8|B Chain B, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP8|C Chain C, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP8|D Chain D, 4-hydroxyphenylpyruvate Dioxygenase
Length = 418
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/379 (61%), Positives = 273/379 (72%), Gaps = 8/379 (2%)
Query: 11 KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
+LVG +NFVR NP+SDRF FHHVE WC DA + A RFS+GLG P+ A+SDLSTGN+
Sbjct: 10 RLVGHRNFVRFNPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGNSA 69
Query: 71 HASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAV 130
HAS LLRSG L F+FTAPY+ LP+F AA R FAA HGLA R++A+
Sbjct: 70 HASLLLRSGSLSFLFTAPYA------HGADAATAALPSFSAAAARRFAADHGLAVRAVAL 123
Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPG 190
V DA+ AF SVA GA+P+ PV L +AEV+LYGDVVLRYVSY D A FLPG
Sbjct: 124 RVADAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLRYVSYPDGAAGEPFLPG 183
Query: 191 FEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGL 250
FE S DYG+ R DH VGNVPELAPA AY FTGFHEFAEFT EDVGT+ESGL
Sbjct: 184 FEGV--ASPGAADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTEDVGTAESGL 241
Query: 251 NSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRK 310
NS+VLANN E VLLP+NEPV GTKR+SQIQT+L+H+ G GVQH+AL S+D+ RTLREM+
Sbjct: 242 NSMVLANNSENVLLPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVLRTLREMQA 301
Query: 311 RSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV 370
RS +GGFEFM P YY ++ RAGDVLT+ QIK+C+ELGVLVDRDDQG LLQIFTKPV
Sbjct: 302 RSAMGGFEFMAPPTSDYYDGVRRRAGDVLTEAQIKECQELGVLVDRDDQGVLLQIFTKPV 361
Query: 371 GDRYVHLLMLVTTFSFSSK 389
GDR L ++ K
Sbjct: 362 GDRPTLFLEIIQRIGCMEK 380
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/361 (35%), Positives = 178/361 (49%), Gaps = 38/361 (10%)
Query: 24 KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF 83
K +R R FH V FW +A A + +G +A L TG+ S++++ G + F
Sbjct: 3 KPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQGKIVF 62
Query: 84 VFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSV 143
V ++ +P DH HG + IA EVED D +
Sbjct: 63 VLSSALNPWNKEMG------------DHLV------KHGDGVKDIAFEVEDCDYIVQKAR 104
Query: 144 AHGAKPSSPPVI-LDNLAVI--AEVQLYGDVVLRYVSYKDKANHL-DFLPGFEP---TDE 196
GAK P + D + A +Q YGD V +K N++ FLPG+E D
Sbjct: 105 ERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLV---EKMNYIGQFLPGYEAPAFMDP 161
Query: 197 ISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVV 254
+ + +DH VGN P E+ A + FH F V T S L S+V
Sbjct: 162 LLPKLPKCSLEMIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIV 221
Query: 255 LANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGV 314
+AN +E + +P+NEP G K+KSQIQ Y+++N GAGVQH+AL +EDI +R +R+R
Sbjct: 222 VANYEESIKMPINEPAPG-KKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRER--- 277
Query: 315 GGFEFMPSPPPTYYKNLKN--RAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGD 372
G EF+ S P TYYK L+ + + E I EEL +LVD D++G LLQIFTKPV D
Sbjct: 278 -GLEFL-SVPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQD 335
Query: 373 R 373
R
Sbjct: 336 R 336
>pdb|1SQI|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1SQI|B Chain B, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
Length = 393
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 183/367 (49%), Gaps = 38/367 (10%)
Query: 18 FVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR 77
+ + PK +R R FH V FW +A A + +G +A L TG+ S++++
Sbjct: 4 YSNKGPKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGLETGSREVVSHVIK 63
Query: 78 SGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADV 137
G + FV + +P DH HG + IA EVED +
Sbjct: 64 QGKIVFVLCSALNPWNKEMG------------DHLV------KHGDGVKDIAFEVEDCEH 105
Query: 138 AFNTSVAHGAKPSSPPVILDNL---AVIAEVQLYGDVVLRYVSYKDKANHLD-FLPGFE- 192
+ GAK P + ++ A +Q YGD V +K N+ FLPGFE
Sbjct: 106 IVQKARERGAKIVREPWVEEDKFGKVKFAVLQTYGDTTHTLV---EKINYTGRFLPGFEA 162
Query: 193 PTDEISSFPL--DYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSES 248
PT + + P + +DH VGN P E+ A + FH F V T S
Sbjct: 163 PTYKDTLLPKLPSCNLEIIDHIVGNQPDQEMESASEWYLKNLQFHRFWSVDDTQVHTEYS 222
Query: 249 GLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREM 308
L S+V+AN +E + +P+NEP G ++KSQIQ Y+++N GAGVQH+AL +EDI T+R +
Sbjct: 223 SLRSIVVANYEESIKMPINEPAPG-RKKSQIQEYVDYNGGAGVQHIALRTEDIITTIRHL 281
Query: 309 RKRSGVGGFEFMPSPPPTYYKNLKN--RAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366
R+R G EF+ + P +YY+ L+ + + E + EEL +LVD D++G LLQIF
Sbjct: 282 RER----GMEFL-AVPSSYYRLLRENLKTSKIQVKENMDVLEELKILVDYDEKGYLLQIF 336
Query: 367 TKPVGDR 373
TKP+ DR
Sbjct: 337 TKPMQDR 343
>pdb|1T47|A Chain A, Structure Of Fe2-Hppd Bound To Ntbc
pdb|1T47|B Chain B, Structure Of Fe2-Hppd Bound To Ntbc
Length = 381
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 163/355 (45%), Gaps = 30/355 (8%)
Query: 24 KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF 83
++D F V V F +A A +S GM +VA S G+ ASY+L +G RF
Sbjct: 14 QADPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMQLVAYSGPENGSRETASYVLTNGSARF 73
Query: 84 VFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSV 143
V T+ P DH A HG +A+EV DA A ++
Sbjct: 74 VLTSVIKPATPWGHFLA---------DHVA------EHGDGVVDLAIEVPDARAAHAYAI 118
Query: 144 AHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSF 200
HGA+ + P L + V+A + YG R+ +LPG+ I
Sbjct: 119 EHGARSVAEPYELKDEHGTVVLAAIATYGKT--RHTLVDRTGYDGPYLPGYVAAAPIVEP 176
Query: 201 PLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN 258
P + +DH VGNV + V + GF EF +D+ T S L S V+A+
Sbjct: 177 PAHRTFQAIDHCVGNVELGRMNEWVGFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADG 236
Query: 259 DEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFE 318
V P+NEP K+KSQI YLE GAGVQH+AL + DI T+R MR G +
Sbjct: 237 TLKVKFPINEPAL-AKKKSQIDEYLEFYGGAGVQHIALNTGDIVETVRTMR----AAGVQ 291
Query: 319 FMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDR 373
F+ + P +YY L GD T + EL +L DRD+ G LLQIFTKPV DR
Sbjct: 292 FLDT-PDSYYDTLGEWVGD--TRVPVDTLRELKILADRDEDGYLLQIFTKPVQDR 343
>pdb|1CJX|A Chain A, Crystal Structure Of Pseudomonas Fluorescens Hppd
pdb|1CJX|B Chain B, Crystal Structure Of Pseudomonas Fluorescens Hppd
pdb|1CJX|C Chain C, Crystal Structure Of Pseudomonas Fluorescens Hppd
pdb|1CJX|D Chain D, Crystal Structure Of Pseudomonas Fluorescens Hppd
Length = 357
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 29/263 (11%)
Query: 117 FAASHGLAARSIAVEVEDADVAFNTSVAHGAKP---SSPPVILDNLAV--IAEVQLYGDV 171
FAA HG + +A V+D+ A+N ++ GA+P + P+ L+ A+ I LY
Sbjct: 69 FAAEHGPSVCGMAFRVKDSQKAYNRALELGAQPIHIDTGPMELNLPAIKGIGGAPLY--- 125
Query: 172 VLRYVSYKDKANHLDF--LPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSF 229
++ +DF L G E P+ G++ +DH NV V + +
Sbjct: 126 LIDRFGEGSSIYDIDFVYLEGVERN------PVGAGLKVIDHLTHNVYR-GRMVYWANFY 178
Query: 230 TGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGA 289
F E D+ +GL S ++ D M+ +P+NE +K QI+ +L G
Sbjct: 179 EKLFNFREARYFDIKGEYTGLTSKAMSAPDGMIRIPLNEE--SSKGAGQIEEFLMQFNGE 236
Query: 290 GVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEE 349
G+QH+A +++D+ +T ++K G FM +PP TYY+ L+ R D E + Q +
Sbjct: 237 GIQHVAFLTDDLVKTWDALKKI----GMRFMTAPPDTYYEMLEGRLPD--HGEPVDQLQA 290
Query: 350 LGVLVD----RDDQGTLLQIFTK 368
G+L+D D+ LLQIF++
Sbjct: 291 RGILLDGSSVEGDKRLLLQIFSE 313
>pdb|2R5V|A Chain A, Hydroxymandelate Synthase Crystal Structure
pdb|2R5V|B Chain B, Hydroxymandelate Synthase Crystal Structure
Length = 357
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 124/308 (40%), Gaps = 36/308 (11%)
Query: 71 HASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAV 130
H S LR G + V T P S D ++ +HG IA+
Sbjct: 40 HRSIALRQGQVTLVLTEPTS-------------------DRHPAAAYLQTHGDGVADIAM 80
Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVI-AEVQLYGDVVLRYVSYKDKANHLDFLP 189
D A+ +V GA+ P AV A + +GDVV + + L P
Sbjct: 81 ATSDVAAAYEAAVRAGAEAVRAPGQHSEAAVTTATIGGFGDVVHTLIQRDGTSAELP--P 138
Query: 190 GFEPTDEISSFPL-DYGIRRLDH--AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTS 246
GF + ++++ D + +DH N +L P V Y + GF + + E +
Sbjct: 139 GFTGSMDVTNHGKGDVDLLGIDHFAICLNAGDLGPTVEYYERALGFRQIFD---EHIVVG 195
Query: 247 ESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLR 306
+NS V+ + V L + EP QI +L+ ++GAGVQH+A S D R ++
Sbjct: 196 AQAMNSTVVQSASGAVTLTLIEPDRNAD-PGQIDEFLKDHQGAGVQHIAFNSNDAVRAVK 254
Query: 307 EMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366
+ +R G EF+ +P YY L R L + VL D D G L QIF
Sbjct: 255 ALSER----GVEFLKTPGA-YYDLLGERI--TLQTHSLDDLRATNVLADEDHGGQLFQIF 307
Query: 367 TKPVGDRY 374
T R+
Sbjct: 308 TASTHPRH 315
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 16/108 (14%)
Query: 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN--NDEMVLL- 264
RL+H VP+L A A+ K+ G +E V E G+ SVV N N +M LL
Sbjct: 5 RLNHVAIAVPDLEKAAAFYKNILGAQ-----VSEAVPLPEHGV-SVVFVNLGNTKMELLH 58
Query: 265 PMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRS 312
P+ S I +L+ N+ G+ H+ + ++I + +++K+
Sbjct: 59 PLG-------LDSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKK 99
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEM------- 261
+DH P+ A Y + G+HE E G+ +++A ++
Sbjct: 10 IDHVAYACPDADEASKYYQETFGWHELHREE-----NPEQGVVEIMMAPAAKLTEHMTQV 64
Query: 262 -VLLPMNEPVFGTKRKSQIQTYL-EHNEGAGVQHLALVSEDIFRTLREMRKR 311
V+ P+N+ +S + +L +HN AG+ H+A +DI +R+R
Sbjct: 65 QVMAPLND-------ESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRER 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,209,411
Number of Sequences: 62578
Number of extensions: 464962
Number of successful extensions: 1163
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1129
Number of HSP's gapped (non-prelim): 14
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)