Query 016432
Match_columns 389
No_of_seqs 275 out of 2075
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02875 4-hydroxyphenylpyruva 100.0 1.8E-79 3.8E-84 606.3 41.2 351 33-385 1-357 (398)
2 KOG0638 4-hydroxyphenylpyruvat 100.0 9.2E-83 2E-87 590.9 15.5 346 17-388 3-357 (381)
3 TIGR01263 4HPPD 4-hydroxypheny 100.0 2.6E-67 5.7E-72 521.0 40.4 324 31-388 1-330 (353)
4 COG3185 4-hydroxyphenylpyruvat 100.0 1.6E-67 3.6E-72 498.9 31.8 314 29-388 19-336 (363)
5 cd07250 HPPD_C_like C-terminal 100.0 1E-45 2.3E-50 336.3 20.7 174 206-388 1-176 (191)
6 PF14696 Glyoxalase_5: Hydroxy 99.9 3.2E-24 6.9E-29 183.6 7.0 126 21-179 2-127 (139)
7 PLN02300 lactoylglutathione ly 99.9 7.2E-21 1.6E-25 183.6 27.3 227 27-323 19-252 (286)
8 TIGR03211 catechol_2_3 catecho 99.9 1.8E-20 3.9E-25 181.9 28.3 251 30-367 2-264 (303)
9 TIGR02295 HpaD 3,4-dihydroxyph 99.9 1.1E-19 2.4E-24 175.4 27.6 243 30-370 2-258 (294)
10 TIGR03213 23dbph12diox 2,3-dih 99.9 1.6E-19 3.5E-24 174.0 27.5 252 30-370 1-265 (286)
11 cd08342 HPPD_N_like N-terminal 99.9 6.3E-20 1.4E-24 157.4 18.4 136 33-193 1-136 (136)
12 cd08353 Glo_EDI_BRP_like_7 Thi 99.6 5.2E-15 1.1E-19 127.1 12.8 129 30-177 1-140 (142)
13 TIGR03081 metmalonyl_epim meth 99.6 8.3E-14 1.8E-18 116.7 14.9 125 32-177 1-128 (128)
14 cd07250 HPPD_C_like C-terminal 99.6 7.5E-14 1.6E-18 127.0 14.0 110 30-156 1-115 (191)
15 PF13669 Glyoxalase_4: Glyoxal 99.5 3.2E-14 6.9E-19 117.4 10.1 97 210-323 1-97 (109)
16 cd08342 HPPD_N_like N-terminal 99.5 2.1E-13 4.5E-18 116.9 15.4 98 209-323 1-98 (136)
17 cd07249 MMCE Methylmalonyl-CoA 99.5 2.8E-13 6.2E-18 113.2 14.6 124 33-177 1-128 (128)
18 cd08353 Glo_EDI_BRP_like_7 Thi 99.5 1.5E-13 3.3E-18 117.9 11.1 110 206-323 1-116 (142)
19 PF13669 Glyoxalase_4: Glyoxal 99.5 3.1E-13 6.7E-18 111.5 11.6 95 34-153 1-97 (109)
20 PLN02367 lactoylglutathione ly 99.5 7.5E-13 1.6E-17 122.7 15.3 128 31-178 74-222 (233)
21 PLN03042 Lactoylglutathione ly 99.5 8.6E-13 1.9E-17 119.3 15.2 128 31-178 26-174 (185)
22 PRK11478 putative lyase; Provi 99.5 8.3E-13 1.8E-17 111.1 14.1 127 28-177 2-128 (129)
23 TIGR01263 4HPPD 4-hydroxypheny 99.4 9.4E-13 2E-17 130.9 13.6 114 26-156 152-270 (353)
24 cd08352 Glo_EDI_BRP_like_1 Thi 99.4 2.3E-12 5.1E-17 106.8 13.4 125 30-177 1-125 (125)
25 PLN02875 4-hydroxyphenylpyruva 99.4 3.3E-12 7.2E-17 127.4 13.1 111 27-153 175-295 (398)
26 TIGR03645 glyox_marine lactoyl 99.4 8.1E-12 1.8E-16 110.6 13.9 128 31-178 3-151 (162)
27 TIGR03081 metmalonyl_epim meth 99.4 5.2E-12 1.1E-16 105.7 11.3 101 208-323 1-101 (128)
28 PLN02367 lactoylglutathione ly 99.4 1.6E-11 3.5E-16 113.8 14.3 134 207-371 74-225 (233)
29 cd07233 Glyoxalase_I Glyoxalas 99.3 3.5E-11 7.5E-16 99.7 13.9 117 33-176 1-121 (121)
30 PLN03042 Lactoylglutathione ly 99.3 2.2E-11 4.9E-16 110.1 12.9 132 207-369 26-175 (185)
31 PRK04101 fosfomycin resistance 99.3 6.2E-11 1.3E-15 101.9 14.7 115 30-177 2-118 (139)
32 TIGR00068 glyox_I lactoylgluta 99.3 9.5E-11 2.1E-15 102.0 15.9 123 29-178 14-141 (150)
33 TIGR03645 glyox_marine lactoyl 99.3 2.7E-11 5.9E-16 107.2 12.0 138 206-369 2-152 (162)
34 cd07241 Glo_EDI_BRP_like_3 Thi 99.3 6.3E-11 1.4E-15 98.4 12.4 119 32-175 1-124 (125)
35 cd07246 Glo_EDI_BRP_like_8 Thi 99.3 1.4E-10 3.1E-15 96.0 14.3 117 36-177 5-121 (122)
36 PF00903 Glyoxalase: Glyoxalas 99.3 2.7E-11 5.9E-16 100.5 9.9 127 32-175 1-128 (128)
37 cd07249 MMCE Methylmalonyl-CoA 99.3 8.9E-11 1.9E-15 97.9 12.9 101 209-323 1-101 (128)
38 cd08364 FosX FosX, a fosfomyci 99.3 1.7E-10 3.7E-15 98.2 14.6 118 30-177 2-121 (131)
39 cd07264 Glo_EDI_BRP_like_15 Th 99.2 2.2E-10 4.8E-15 95.5 14.5 124 33-177 1-124 (125)
40 PF00903 Glyoxalase: Glyoxalas 99.2 1.4E-11 3.1E-16 102.2 6.8 128 208-365 1-128 (128)
41 cd08355 Glo_EDI_BRP_like_14 Th 99.2 2.6E-10 5.7E-15 95.1 14.4 119 36-177 3-121 (122)
42 cd07242 Glo_EDI_BRP_like_6 Thi 99.2 1.9E-10 4.2E-15 96.5 13.5 118 32-177 1-127 (128)
43 PRK11478 putative lyase; Provi 99.2 1E-10 2.2E-15 98.3 11.6 102 205-323 3-104 (129)
44 cd07253 Glo_EDI_BRP_like_2 Thi 99.2 1.4E-10 3.1E-15 96.0 12.1 120 30-177 1-124 (125)
45 cd07263 Glo_EDI_BRP_like_16 Th 99.2 1.7E-10 3.6E-15 94.6 12.3 116 35-177 1-119 (119)
46 cd07247 SgaA_N_like N-terminal 99.2 3.7E-10 8E-15 92.8 14.3 113 33-177 1-114 (114)
47 cd07243 2_3_CTD_C C-terminal d 99.2 4.1E-10 8.9E-15 97.6 15.1 116 29-177 3-124 (143)
48 cd08359 Glo_EDI_BRP_like_22 Th 99.2 2.3E-10 5.1E-15 94.7 12.9 115 35-177 4-119 (119)
49 cd07257 THT_oxygenase_C The C- 99.2 8.4E-11 1.8E-15 103.0 10.0 123 208-369 1-126 (153)
50 cd07233 Glyoxalase_I Glyoxalas 99.2 2.4E-10 5.2E-15 94.6 11.3 97 209-323 1-99 (121)
51 cd09014 BphC-JF8_C_like C-term 99.2 9.9E-10 2.1E-14 97.6 15.6 120 28-178 2-127 (166)
52 cd07257 THT_oxygenase_C The C- 99.2 4.4E-10 9.6E-15 98.4 13.0 119 32-177 1-124 (153)
53 cd08347 PcpA_C_like C-terminal 99.2 9.9E-10 2.1E-14 96.8 15.2 114 32-178 1-120 (157)
54 cd09011 Glo_EDI_BRP_like_23 Th 99.2 5.4E-10 1.2E-14 93.1 12.8 117 31-177 1-118 (120)
55 cd07243 2_3_CTD_C C-terminal d 99.2 7.5E-10 1.6E-14 95.9 13.7 120 204-368 2-125 (143)
56 PRK10291 glyoxalase I; Provisi 99.2 1.5E-09 3.2E-14 91.8 15.1 114 38-178 2-120 (129)
57 cd08346 PcpA_N_like N-terminal 99.2 6.8E-10 1.5E-14 92.2 12.8 119 32-176 1-126 (126)
58 cd08363 FosB FosB, a fosfomyci 99.1 5.7E-10 1.2E-14 95.0 12.4 112 33-177 1-114 (131)
59 PRK06724 hypothetical protein; 99.1 8.9E-10 1.9E-14 93.8 13.5 109 30-177 5-122 (128)
60 cd09014 BphC-JF8_C_like C-term 99.1 9.8E-10 2.1E-14 97.6 13.7 124 204-369 2-128 (166)
61 cd08351 ChaP_like ChaP, an enz 99.1 1.8E-09 3.9E-14 90.5 14.0 111 30-178 2-121 (123)
62 cd09013 BphC-JF8_N_like N-term 99.1 1.5E-09 3.2E-14 90.5 13.4 109 28-177 2-117 (121)
63 cd08343 ED_TypeI_classII_C C-t 99.1 2.6E-09 5.7E-14 90.6 15.0 110 34-177 1-116 (131)
64 cd07245 Glo_EDI_BRP_like_9 Thi 99.1 8.8E-10 1.9E-14 89.1 11.5 112 33-174 1-113 (114)
65 cd08360 MhqB_like_C C-terminal 99.1 1.3E-09 2.8E-14 93.0 12.9 116 207-370 2-122 (134)
66 cd08360 MhqB_like_C C-terminal 99.1 2.6E-09 5.6E-14 91.1 14.8 110 31-177 2-119 (134)
67 cd07267 THT_Oxygenase_N N-term 99.1 2.1E-09 4.6E-14 88.7 13.5 108 30-177 1-109 (113)
68 cd07265 2_3_CTD_N N-terminal d 99.1 1.8E-09 3.9E-14 90.1 13.1 110 30-177 2-118 (122)
69 cd07237 BphC1-RGP6_C_like C-te 99.1 9.3E-10 2E-14 96.5 11.5 123 206-369 7-132 (154)
70 cd08345 Fosfomycin_RP Fosfomyc 99.1 1.9E-09 4.1E-14 88.3 12.5 108 35-177 1-110 (113)
71 cd06587 Glo_EDI_BRP_like This 99.1 2.5E-09 5.4E-14 85.4 12.9 111 35-174 1-111 (112)
72 cd07256 HPCD_C_class_II C-term 99.1 4.2E-09 9E-14 93.0 15.2 113 31-177 2-122 (161)
73 cd08358 Glo_EDI_BRP_like_21 Th 99.1 4.9E-09 1.1E-13 89.1 15.0 112 32-177 2-126 (127)
74 cd08362 BphC5-RrK37_N_like N-t 99.1 2.5E-09 5.5E-14 88.5 12.8 110 30-177 1-116 (120)
75 cd07235 MRD Mitomycin C resist 99.1 7.8E-10 1.7E-14 92.1 9.7 118 33-176 1-121 (122)
76 COG2514 Predicted ring-cleavag 99.1 3.9E-08 8.4E-13 91.9 21.3 216 31-300 9-242 (265)
77 cd08352 Glo_EDI_BRP_like_1 Thi 99.1 2.3E-09 5.1E-14 88.7 12.0 101 206-323 1-101 (125)
78 cd07237 BphC1-RGP6_C_like C-te 99.1 4.8E-09 1E-13 92.0 14.5 116 30-177 7-130 (154)
79 TIGR00068 glyox_I lactoylgluta 99.1 2.5E-09 5.5E-14 93.0 12.4 127 205-369 14-142 (150)
80 cd08349 BLMA_like Bleomycin bi 99.0 6.3E-09 1.4E-13 84.7 13.9 109 37-177 3-112 (112)
81 cd07240 ED_TypeI_classII_N N-t 99.0 3.2E-09 7E-14 87.2 12.2 107 31-177 1-113 (117)
82 cd07244 FosA FosA, a Fosfomyci 99.0 4.6E-09 9.9E-14 87.7 13.2 107 32-177 1-109 (121)
83 cd08350 BLMT_like BLMT, a bleo 99.0 6.4E-09 1.4E-13 86.6 13.6 107 35-177 5-118 (120)
84 cd07241 Glo_EDI_BRP_like_3 Thi 99.0 2.1E-09 4.5E-14 89.2 10.5 99 208-323 1-102 (125)
85 cd07239 BphC5-RK37_C_like C-te 99.0 7.2E-09 1.6E-13 89.9 14.0 108 31-177 3-116 (144)
86 cd08361 PpCmtC_N N-terminal do 99.0 3.2E-09 6.8E-14 89.4 11.4 116 205-370 3-121 (124)
87 cd08364 FosX FosX, a fosfomyci 99.0 5.2E-09 1.1E-13 89.0 12.8 123 205-371 1-125 (131)
88 cd07242 Glo_EDI_BRP_like_6 Thi 99.0 3.6E-09 7.7E-14 88.7 11.4 94 208-323 1-100 (128)
89 cd08361 PpCmtC_N N-terminal do 99.0 4.7E-09 1E-13 88.3 12.1 108 29-177 3-118 (124)
90 cd07256 HPCD_C_class_II C-term 99.0 7E-09 1.5E-13 91.6 13.7 119 207-370 2-125 (161)
91 cd07255 Glo_EDI_BRP_like_12 Th 99.0 1.7E-08 3.8E-13 84.0 15.4 113 31-177 1-118 (125)
92 PF12681 Glyoxalase_2: Glyoxal 99.0 6.1E-09 1.3E-13 84.4 12.3 104 38-176 1-108 (108)
93 PLN02300 lactoylglutathione ly 99.0 8.7E-09 1.9E-13 99.5 14.8 139 204-380 20-160 (286)
94 KOG2943 Predicted glyoxalase [ 99.0 1E-08 2.2E-13 93.6 14.0 214 31-322 16-240 (299)
95 cd07265 2_3_CTD_N N-terminal d 99.0 5.9E-09 1.3E-13 86.9 11.7 87 206-323 2-93 (122)
96 cd07252 BphC1-RGP6_N_like N-te 99.0 8.8E-09 1.9E-13 85.9 12.4 108 31-177 1-116 (120)
97 PRK04101 fosfomycin resistance 99.0 5.1E-09 1.1E-13 89.9 11.1 121 205-372 1-123 (139)
98 cd09012 Glo_EDI_BRP_like_24 Th 99.0 1E-08 2.2E-13 85.8 12.5 119 34-177 2-123 (124)
99 cd07238 Glo_EDI_BRP_like_5 Thi 99.0 1.7E-08 3.6E-13 82.8 13.4 105 36-178 4-111 (112)
100 cd07263 Glo_EDI_BRP_like_16 Th 99.0 5.9E-09 1.3E-13 85.3 10.6 95 211-323 1-96 (119)
101 cd07262 Glo_EDI_BRP_like_19 Th 99.0 1.4E-08 3E-13 84.6 13.0 111 33-176 1-122 (123)
102 cd08347 PcpA_C_like C-terminal 99.0 7.9E-09 1.7E-13 91.0 12.0 117 208-369 1-121 (157)
103 cd07252 BphC1-RGP6_N_like N-te 99.0 1.4E-08 2.9E-13 84.8 12.8 115 207-369 1-118 (120)
104 cd07254 Glo_EDI_BRP_like_20 Th 99.0 1.9E-08 4.2E-13 83.5 13.6 109 34-177 3-116 (120)
105 cd07266 HPCD_N_class_II N-term 98.9 1.6E-08 3.6E-13 83.9 12.7 108 30-177 2-117 (121)
106 cd07244 FosA FosA, a Fosfomyci 98.9 1.1E-08 2.3E-13 85.5 11.4 112 208-372 1-114 (121)
107 cd08344 MhqB_like_N N-terminal 98.9 2.4E-08 5.1E-13 82.2 13.1 103 32-177 2-108 (112)
108 cd08356 Glo_EDI_BRP_like_17 Th 98.9 1.7E-08 3.7E-13 83.5 12.3 103 36-176 5-112 (113)
109 cd08348 BphC2-C3-RGP6_C_like T 98.9 4.2E-08 9E-13 83.0 14.8 113 32-177 1-119 (134)
110 cd08354 Glo_EDI_BRP_like_13 Th 98.9 8.8E-09 1.9E-13 85.3 10.4 118 33-177 1-121 (122)
111 cd07239 BphC5-RK37_C_like C-te 98.9 2.3E-08 5.1E-13 86.7 13.3 86 207-323 3-91 (144)
112 PF13468 Glyoxalase_3: Glyoxal 98.9 4.2E-08 9.1E-13 87.8 15.1 167 33-230 1-175 (175)
113 cd08357 Glo_EDI_BRP_like_18 Th 98.9 7.4E-09 1.6E-13 86.1 9.5 117 35-177 2-124 (125)
114 TIGR03211 catechol_2_3 catecho 98.9 2.7E-08 5.9E-13 96.5 14.7 117 28-177 141-264 (303)
115 cd07245 Glo_EDI_BRP_like_9 Thi 98.9 7.4E-09 1.6E-13 83.7 9.0 93 209-323 1-93 (114)
116 cd08363 FosB FosB, a fosfomyci 98.9 1.2E-08 2.6E-13 86.8 10.1 116 209-371 1-118 (131)
117 cd08346 PcpA_N_like N-terminal 98.9 2.3E-08 4.9E-13 82.9 11.5 100 208-323 1-105 (126)
118 cd08351 ChaP_like ChaP, an enz 98.9 2E-08 4.4E-13 84.0 11.1 85 207-323 3-89 (123)
119 cd07258 PpCmtC_C C-terminal do 98.9 3E-08 6.5E-13 85.8 12.5 107 34-177 1-113 (141)
120 cd07255 Glo_EDI_BRP_like_12 Th 98.9 3.6E-08 7.8E-13 82.1 12.3 116 207-368 1-119 (125)
121 cd07267 THT_Oxygenase_N N-term 98.9 4.8E-08 1E-12 80.6 12.8 110 206-368 1-110 (113)
122 TIGR02295 HpaD 3,4-dihydroxyph 98.9 6E-08 1.3E-12 93.6 15.4 116 28-177 132-255 (294)
123 COG3185 4-hydroxyphenylpyruvat 98.8 2.1E-08 4.5E-13 96.6 10.5 116 22-156 157-277 (363)
124 cd07253 Glo_EDI_BRP_like_2 Thi 98.8 4E-08 8.7E-13 81.2 10.4 96 206-323 1-97 (125)
125 cd09013 BphC-JF8_N_like N-term 98.8 3.6E-08 7.9E-13 82.1 10.1 111 205-368 3-118 (121)
126 cd07266 HPCD_N_class_II N-term 98.8 5.3E-08 1.1E-12 80.8 10.9 112 206-368 2-118 (121)
127 PRK10291 glyoxalase I; Provisi 98.8 3.7E-08 8E-13 83.1 10.1 92 213-323 1-94 (129)
128 KOG2944 Glyoxalase [Carbohydra 98.8 4.3E-08 9.3E-13 84.3 10.1 104 205-323 39-144 (170)
129 cd08348 BphC2-C3-RGP6_C_like T 98.8 1.6E-07 3.5E-12 79.4 13.5 117 208-369 1-121 (134)
130 cd08343 ED_TypeI_classII_C C-t 98.8 1.6E-07 3.5E-12 79.5 13.2 114 210-369 1-118 (131)
131 PRK06724 hypothetical protein; 98.8 5.4E-08 1.2E-12 82.8 10.0 86 205-323 4-95 (128)
132 cd07261 Glo_EDI_BRP_like_11 Th 98.8 1.1E-07 2.5E-12 77.9 11.6 109 36-176 2-113 (114)
133 cd07240 ED_TypeI_classII_N N-t 98.8 5.8E-08 1.3E-12 79.7 9.8 85 207-323 1-89 (117)
134 cd07258 PpCmtC_C C-terminal do 98.8 4.7E-08 1E-12 84.6 9.5 110 210-369 1-115 (141)
135 TIGR03213 23dbph12diox 2,3-dih 98.7 2.9E-07 6.2E-12 88.7 14.9 115 30-177 140-262 (286)
136 cd08359 Glo_EDI_BRP_like_22 Th 98.7 2.2E-07 4.7E-12 76.8 12.2 92 211-323 4-95 (119)
137 cd08344 MhqB_like_N N-terminal 98.7 2.4E-07 5.3E-12 76.1 12.4 108 207-369 1-110 (112)
138 cd08362 BphC5-RrK37_N_like N-t 98.7 1.6E-07 3.4E-12 77.7 10.4 86 206-323 1-90 (120)
139 cd06587 Glo_EDI_BRP_like This 98.7 1.9E-07 4.2E-12 74.3 10.2 90 211-323 1-90 (112)
140 cd07254 Glo_EDI_BRP_like_20 Th 98.7 2.7E-07 6E-12 76.5 11.4 110 211-367 4-116 (120)
141 cd08358 Glo_EDI_BRP_like_21 Th 98.7 3.7E-07 7.9E-12 77.6 11.9 100 207-323 1-108 (127)
142 cd07264 Glo_EDI_BRP_like_15 Th 98.6 3.2E-07 6.9E-12 76.3 10.9 97 210-323 2-100 (125)
143 cd07251 Glo_EDI_BRP_like_10 Th 98.6 2E-07 4.2E-12 76.9 9.5 115 36-176 2-119 (121)
144 cd08354 Glo_EDI_BRP_like_13 Th 98.6 3.5E-07 7.7E-12 75.5 10.6 120 209-368 1-122 (122)
145 cd08345 Fosfomycin_RP Fosfomyc 98.6 3.1E-07 6.7E-12 75.0 9.6 84 211-323 1-86 (113)
146 KOG2944 Glyoxalase [Carbohydra 98.6 3.1E-07 6.6E-12 79.1 9.2 124 30-177 40-167 (170)
147 cd07247 SgaA_N_like N-terminal 98.5 7.6E-07 1.7E-11 72.9 10.5 90 209-323 1-90 (114)
148 cd07238 Glo_EDI_BRP_like_5 Thi 98.5 1.1E-06 2.4E-11 71.9 11.3 82 212-323 4-86 (112)
149 cd07246 Glo_EDI_BRP_like_8 Thi 98.5 2E-06 4.4E-11 70.8 13.0 91 213-323 6-97 (122)
150 KOG0638 4-hydroxyphenylpyruvat 98.5 2.1E-07 4.5E-12 88.3 7.0 107 205-323 14-120 (381)
151 cd07235 MRD Mitomycin C resist 98.5 1E-06 2.2E-11 73.2 9.1 95 209-323 1-98 (122)
152 cd07262 Glo_EDI_BRP_like_19 Th 98.4 2E-06 4.4E-11 71.4 10.1 90 209-323 1-96 (123)
153 cd08355 Glo_EDI_BRP_like_14 Th 98.4 3.2E-06 7E-11 70.2 11.1 93 213-323 4-97 (122)
154 cd08357 Glo_EDI_BRP_like_18 Th 98.4 8.5E-07 1.8E-11 73.6 7.2 93 211-323 2-96 (125)
155 cd06588 PhnB_like Escherichia 98.3 1.7E-05 3.8E-10 67.0 13.7 112 36-174 3-126 (128)
156 COG2764 PhnB Uncharacterized p 98.3 2E-05 4.2E-10 67.6 13.6 114 36-175 4-128 (136)
157 cd09012 Glo_EDI_BRP_like_24 Th 98.3 1.3E-05 2.8E-10 66.8 11.5 92 210-323 2-100 (124)
158 cd09011 Glo_EDI_BRP_like_23 Th 98.2 6.7E-06 1.4E-10 68.2 9.2 92 208-323 2-94 (120)
159 COG3324 Predicted enzyme relat 98.2 2.3E-05 5E-10 66.2 12.4 114 31-177 8-124 (127)
160 cd08356 Glo_EDI_BRP_like_17 Th 98.2 7.8E-06 1.7E-10 67.5 9.3 77 213-321 6-82 (113)
161 cd07261 Glo_EDI_BRP_like_11 Th 98.2 9.5E-06 2.1E-10 66.4 9.5 110 212-367 2-114 (114)
162 PF13468 Glyoxalase_3: Glyoxal 98.1 4.4E-06 9.6E-11 74.7 6.2 98 209-318 1-101 (175)
163 cd08349 BLMA_like Bleomycin bi 98.1 3.7E-05 8E-10 62.2 10.5 85 213-323 3-88 (112)
164 cd07251 Glo_EDI_BRP_like_10 Th 98.1 8.9E-06 1.9E-10 66.8 6.5 116 212-367 2-120 (121)
165 PF14696 Glyoxalase_5: Hydroxy 98.1 6.6E-06 1.4E-10 70.8 5.8 99 203-323 4-102 (139)
166 PF12681 Glyoxalase_2: Glyoxal 98.0 1.3E-05 2.7E-10 64.7 6.6 85 214-323 1-85 (108)
167 cd08350 BLMT_like BLMT, a bleo 97.8 0.0002 4.3E-09 59.3 10.1 79 212-320 6-84 (120)
168 COG3565 Predicted dioxygenase 97.8 0.00049 1.1E-08 56.4 11.4 118 33-175 5-126 (138)
169 COG0346 GloA Lactoylglutathion 97.6 0.0003 6.5E-09 57.3 7.9 33 31-63 1-33 (138)
170 COG3607 Predicted lactoylgluta 97.5 0.0012 2.6E-08 55.0 10.2 116 32-177 3-126 (133)
171 COG3324 Predicted enzyme relat 97.3 0.0028 6.2E-08 53.6 10.1 93 206-323 7-100 (127)
172 PRK10148 hypothetical protein; 97.3 0.011 2.4E-07 51.5 14.2 112 36-175 5-138 (147)
173 KOG2943 Predicted glyoxalase [ 97.2 0.0024 5.2E-08 58.9 9.5 119 21-177 143-269 (299)
174 COG2514 Predicted ring-cleavag 97.0 0.0066 1.4E-07 57.3 10.2 90 206-320 8-100 (265)
175 PRK01037 trmD tRNA (guanine-N( 96.9 0.0065 1.4E-07 59.6 10.0 104 32-177 247-353 (357)
176 cd06588 PhnB_like Escherichia 96.8 0.031 6.8E-07 46.9 12.1 92 214-323 5-105 (128)
177 COG3565 Predicted dioxygenase 96.7 0.0069 1.5E-07 49.8 6.9 94 209-323 5-100 (138)
178 COG0346 GloA Lactoylglutathion 96.6 0.002 4.3E-08 52.3 3.8 32 208-239 2-33 (138)
179 PF14506 CppA_N: CppA N-termin 95.6 0.19 4.1E-06 41.9 10.2 106 34-171 2-108 (125)
180 COG2764 PhnB Uncharacterized p 94.3 0.13 2.9E-06 44.1 6.3 100 214-328 6-111 (136)
181 PF14506 CppA_N: CppA N-termin 91.4 1.5 3.1E-05 36.7 8.2 80 211-311 3-83 (125)
182 PF06983 3-dmu-9_3-mt: 3-demet 88.3 7.1 0.00015 32.4 10.3 83 35-147 6-97 (116)
183 PF07063 DUF1338: Domain of un 85.5 1.9 4.2E-05 42.0 6.1 40 276-320 171-216 (302)
184 COG3607 Predicted lactoylgluta 83.3 5.7 0.00012 33.5 7.0 91 211-323 6-103 (133)
185 PRK01037 trmD tRNA (guanine-N( 82.9 5.1 0.00011 39.7 7.8 27 208-234 247-273 (357)
186 PRK10148 hypothetical protein; 82.0 23 0.00051 30.5 10.9 25 214-238 7-32 (147)
187 PF08004 DUF1699: Protein of u 76.6 3.9 8.4E-05 34.4 4.0 41 288-335 18-60 (131)
188 PF06983 3-dmu-9_3-mt: 3-demet 73.8 24 0.00053 29.1 8.3 95 217-336 11-110 (116)
189 PF14507 CppA_C: CppA C-termin 46.9 8.8 0.00019 31.2 0.8 23 208-231 5-27 (101)
190 cd04882 ACT_Bt0572_2 C-termina 40.3 53 0.0012 23.1 4.1 28 289-320 38-65 (65)
191 PF07063 DUF1338: Domain of un 37.7 66 0.0014 31.5 5.4 39 112-150 172-216 (302)
192 cd04882 ACT_Bt0572_2 C-termina 36.0 67 0.0015 22.5 4.1 26 124-149 39-64 (65)
193 PF15067 FAM124: FAM124 family 35.9 3.6E+02 0.0079 25.3 9.6 66 17-87 107-180 (236)
194 COG1437 CyaB Adenylate cyclase 31.6 3.9E+02 0.0084 24.1 12.1 57 22-87 68-124 (178)
195 COG4747 ACT domain-containing 31.1 43 0.00093 28.1 2.5 26 293-322 111-136 (142)
196 cd04883 ACT_AcuB C-terminal AC 30.7 89 0.0019 22.5 4.1 30 289-322 40-71 (72)
197 cd04883 ACT_AcuB C-terminal AC 28.6 1.1E+02 0.0024 22.0 4.3 28 124-151 41-70 (72)
198 PF14507 CppA_C: CppA C-termin 28.5 28 0.00061 28.3 1.0 23 32-55 5-27 (101)
199 PRK14584 hmsS hemin storage sy 26.2 2E+02 0.0043 25.3 5.8 62 303-371 81-143 (153)
200 COG0036 Rpe Pentose-5-phosphat 25.6 2.5E+02 0.0054 26.2 6.7 84 262-355 66-165 (220)
201 COG4747 ACT domain-containing 23.6 70 0.0015 26.9 2.4 25 128-152 112-136 (142)
202 COG4064 MtrG Tetrahydromethano 23.2 24 0.00053 26.5 -0.3 33 299-336 15-47 (75)
203 TIGR00318 cyaB adenylyl cyclas 23.0 4.1E+02 0.0088 23.4 7.5 47 33-87 77-123 (174)
204 cd07268 Glo_EDI_BRP_like_4 Thi 22.4 85 0.0018 27.3 2.9 24 209-232 2-25 (149)
205 PF06185 YecM: YecM protein; 21.3 1.1E+02 0.0023 27.8 3.4 30 206-235 32-61 (185)
206 cd04906 ACT_ThrD-I_1 First of 20.5 2.9E+02 0.0063 21.1 5.4 28 292-323 42-73 (85)
No 1
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=100.00 E-value=1.8e-79 Score=606.32 Aligned_cols=351 Identities=73% Similarity=1.165 Sum_probs=304.9
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChH
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (389)
||||+|||+|+++++.||+..|||+.++++++++|++...+++++||+++|+|++|..+..+...+...++...|.++.+
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 69999999999999999999999999999999999988899999999999999999755211100001122234444446
Q ss_pred HHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccC-----ceEEEEEEecCCeEEEEeecCCCCCCCC-
Q 016432 113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN-----LAVIAEVQLYGDVVLRYVSYKDKANHLD- 186 (389)
Q Consensus 113 ~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~-----~~~~~~v~~~gg~~~~fve~~~~~~~g~- 186 (389)
++++|++.||+|||+|||+|+|+++++++|+++|++++.+|+...+ .+.++.|+++||++|+||++ .++.+.
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr--~~~~~~~ 158 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSY--KGFDGAK 158 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEcc--CCCCCCc
Confidence 7899999999999999999999999999999999999999887533 37899999999999999996 455566
Q ss_pred CCCCCccCCCCCCCCccccceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEe
Q 016432 187 FLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPM 266 (389)
Q Consensus 187 ~lp~f~~~~~~~~~~~~~~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l 266 (389)
|+|+|++.+.......+.++.+||||+++|++|++|+.||+++|||+..++++.+++.+..+|++|+++.++++.++|+|
T Consensus 159 f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipL 238 (398)
T PLN02875 159 FLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPL 238 (398)
T ss_pred cCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEe
Confidence 99999766432211234569999999999999999999999999999999888777777889999999999999999999
Q ss_pred ccCCCCCCCCchHHHHHhhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHH
Q 016432 267 NEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQ 346 (389)
Q Consensus 267 ~e~~~~~~~~s~i~~fl~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~ 346 (389)
|||..+++++|||++||++++|+|||||||.|+||.+++++|++++.+.|++||++||++||++|.+|++.++.+++|++
T Consensus 239 nEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~ 318 (398)
T PLN02875 239 NEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKE 318 (398)
T ss_pred ccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHH
Confidence 99974324689999999999999999999999999999999999644459999998768999999999975568999999
Q ss_pred HHHcCceeecCCCceEEEEeccccCCCCceEEEEEEecC
Q 016432 347 CEELGVLVDRDDQGTLLQIFTKPVGDRYVHLLMLVTTFS 385 (389)
Q Consensus 347 l~~~~IL~D~D~~g~llqift~~~~~~~~~FfE~iqR~~ 385 (389)
||++|||||+|++||||||||||+++|||||||||||+|
T Consensus 319 L~~~~ILvD~d~~G~LLQIFTkp~~~rpt~FfEiIQR~g 357 (398)
T PLN02875 319 CEELGILVDKDDQGVLLQIFTKPVGDRPTLFLEIIQRIG 357 (398)
T ss_pred HHHcCEEEecCCCceEEEEeccccCCCCceEEEEEEecC
Confidence 999999999999999999999999999999999999997
No 2
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-83 Score=590.89 Aligned_cols=346 Identities=41% Similarity=0.655 Sum_probs=320.5
Q ss_pred cccccCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccc
Q 016432 17 NFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDA 96 (389)
Q Consensus 17 ~~~~~~~~~~~~~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~ 96 (389)
.| ++|+||+...+.++|||+|||.|+.++++||+..|||++.+++++++|++..+++++++|++.++++++.+|+.
T Consensus 3 ~~-~k~~k~~~g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~--- 78 (381)
T KOG0638|consen 3 TY-DKGAKPEAGKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDN--- 78 (381)
T ss_pred cc-cCCCCccccceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCc---
Confidence 35 88999999999999999999999999999999999999999999999998888999999999999999988763
Q ss_pred cccCCCCCCCCCCChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccC---ceEEEEEEecCCeEE
Q 016432 97 ADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN---LAVIAEVQLYGDVVL 173 (389)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~---~~~~~~v~~~gg~~~ 173 (389)
+....++.+||+||.+|||+|+|++++++.++++||+++++|....+ .++++.++++|++.|
T Consensus 79 ---------------~~~G~~l~~HgdgvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~th 143 (381)
T KOG0638|consen 79 ---------------SEYGDHLVKHGDGVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTH 143 (381)
T ss_pred ---------------hhhhhhhhhcccchhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhh
Confidence 23456889999999999999999999999999999999999976544 488999999999999
Q ss_pred EEeecCCCCCCCCCCCCCccCCCCCCC--CccccceeEeEEEEecC--CHHHHHHHHHHhhCCeEeEEEecccccccccC
Q 016432 174 RYVSYKDKANHLDFLPGFEPTDEISSF--PLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG 249 (389)
Q Consensus 174 ~fve~~~~~~~g~~lp~f~~~~~~~~~--~~~~~~~~iDHv~~~V~--dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g 249 (389)
+++++ .+|.|.|||+|++++..... ....++.+|||++.|++ +|+.+++||.++|||+.+|++++.++.+++++
T Consensus 144 tlvEr--~~y~g~FLPGF~~v~~~~~fp~l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~Sa 221 (381)
T KOG0638|consen 144 TLVER--KGYKGPFLPGFEPVSSDALFPKLPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSA 221 (381)
T ss_pred hhhhh--ccccccCCCCcccCccccccCCCCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHH
Confidence 99996 68999999999998762211 12368999999999998 89999999999999999999998888899999
Q ss_pred ceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhhH
Q 016432 250 LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYK 329 (389)
Q Consensus 250 ~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~ 329 (389)
++|+++.+.++.|+++||||.+|....|||++|+++|+|+|+||||+.|+||.+|++.|++| |++||.+| .+||+
T Consensus 222 Lrs~vlan~~esi~mpinEp~~G~k~ksQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~r----G~eFLs~P-s~YYq 296 (381)
T KOG0638|consen 222 LRSIVLANYEESIKMPINEPAPGKKKKSQIQEYVEYHGGAGVQHIALNTEDIIEAIRGLRAR----GGEFLSPP-STYYQ 296 (381)
T ss_pred HHHHHHhcCCccEEEeccCCCCCCccHHHHHHHHHhcCCCceeeeeecchHHHHHHHHHHhc----CCccccCC-HHHHH
Confidence 99999999999999999999999666699999999999999999999999999999999999 99999988 99999
Q ss_pred hHhhhhC--CCCChhhHHHHHHcCceeecCCCceEEEEeccccCCCCceEEEEEEecCCCC
Q 016432 330 NLKNRAG--DVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRYVHLLMLVTTFSFSS 388 (389)
Q Consensus 330 ~l~~r~~--~~~~~~~~~~l~~~~IL~D~D~~g~llqift~~~~~~~~~FfE~iqR~~~~~ 388 (389)
+|++|+. ...++|+++.|+++|||+|+|++||||||||||++||||||+|||||.|+.|
T Consensus 297 nl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQIFTKplqdrpTlFlEiIQR~n~~G 357 (381)
T KOG0638|consen 297 NLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQIFTKPLQDRPTLFLEIIQRQNHEG 357 (381)
T ss_pred hHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEeeeeccccCCCchHHHHHHHHhcccc
Confidence 9999998 6778999999999999999999999999999999999999999999999876
No 3
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=100.00 E-value=2.6e-67 Score=520.98 Aligned_cols=324 Identities=40% Similarity=0.639 Sum_probs=278.3
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD 110 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~ 110 (389)
++++||+|+|+|++++++||++.|||+++++.. +.+...+.++++|++.|+|++|..+.
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~---~~~~~~~~~~~~G~~~l~L~~~~~~~------------------ 59 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKET---GHREKASHVLRQGQINFVLTAPYSSD------------------ 59 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEee---cCCceeEEEEEeCCEEEEEecCCCCC------------------
Confidence 468999999999999999999999999998732 11234566789999999999876543
Q ss_pred hHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeecc-CceEEEEEEecCCeEEEEeecCCCCCCCCCCC
Q 016432 111 HAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVSYKDKANHLDFLP 189 (389)
Q Consensus 111 ~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~-~~~~~~~v~~~gg~~~~fve~~~~~~~g~~lp 189 (389)
++..+++..||+|+++|||+|+|+++++++|+++|++++.+|+... ++..++.|+++||+.|+|||+ .++.+.++|
T Consensus 60 -s~~~~~~~~hg~gv~~iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~--~~~~~~~~~ 136 (353)
T TIGR01263 60 -SPAADFAAKHGDGVKDVAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDR--GGYKGSFYP 136 (353)
T ss_pred -chHHHHHHhCCCceEEEEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcC--CCCCCCCCC
Confidence 2678899999999999999999999999999999999999887531 467899999999999999995 445556677
Q ss_pred CCccCC-CC--CCCCccccceeEeEEEEecC--CHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEE
Q 016432 190 GFEPTD-EI--SSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLL 264 (389)
Q Consensus 190 ~f~~~~-~~--~~~~~~~~~~~iDHv~~~V~--dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l 264 (389)
++.... .. .....+..+.+|||++++|+ |+++|+.||+++|||++.++.+. .++.+|++|+++.++++.++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~---~~~~~~~~s~~~~~~~g~~~i 213 (353)
T TIGR01263 137 GFFESLLDAALHEPPPGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDI---KTEYSALNSIVMASPDGKVKI 213 (353)
T ss_pred CccccccccccccCCCCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEe---ccCCccEEEEEEECCCCcEEE
Confidence 654221 10 01123567999999999998 99999999999999999887653 334578889999988899999
Q ss_pred EeccCCCCCCCCchHHHHHhhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhH
Q 016432 265 PMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQI 344 (389)
Q Consensus 265 ~l~e~~~~~~~~s~i~~fl~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~ 344 (389)
+|++|... ...+++++|++.++|+|+|||||.|+||++++++|+++ |++|+.+| .+||++|.+|++. +.++++
T Consensus 214 ~L~ep~~~-~~~s~i~~fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~----Gv~~l~~P-~~yY~~l~~r~~~-~~~~~~ 286 (353)
T TIGR01263 214 PLNEPASG-KDKSQIEEFLEFYNGAGVQHIALNTDDIVRTVRALRAR----GVEFLDTP-DTYYDLLGERLGG-HVKEDL 286 (353)
T ss_pred EEeccCCC-CCCCHHHHHHHHcCCCCccEEEEEcCCHHHHHHHHHHc----CCccCcCC-HHHHHHHHHHhcc-cccchH
Confidence 99998532 45789999999988999999999999999999999999 99999988 9999999999974 568999
Q ss_pred HHHHHcCceeecCCCceEEEEeccccCCCCceEEEEEEecCCCC
Q 016432 345 KQCEELGVLVDRDDQGTLLQIFTKPVGDRYVHLLMLVTTFSFSS 388 (389)
Q Consensus 345 ~~l~~~~IL~D~D~~g~llqift~~~~~~~~~FfE~iqR~~~~~ 388 (389)
++||++|||||+|++||||||||||+++|||||||||||+|+.|
T Consensus 287 ~~l~~~~iL~D~d~~g~llqift~~~~~~~~~FfEiiqR~~~~g 330 (353)
T TIGR01263 287 DTLRELNILIDGDEDGYLLQIFTKPLQDRGTLFFEIIQRKGAGG 330 (353)
T ss_pred HHHHHCCEEEecCCCceEEEEeccCCCCCCCeEEEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999876
No 4
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=1.6e-67 Score=498.89 Aligned_cols=314 Identities=30% Similarity=0.466 Sum_probs=280.3
Q ss_pred CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 29 ~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
+..+++||+|+|+|.+.++.-|...|||+..+.| |++.+.+++||+++|+||++ +.
T Consensus 19 ~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~H------rsk~v~l~rQGdinlvvn~~--~~---------------- 74 (363)
T COG3185 19 GTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKH------RSKAVTLYRQGDINLVVNAE--PD---------------- 74 (363)
T ss_pred CCCceeEEEEecCCHHHHHHHHHHHhCccccccc------cccceeEEEeCCEEEEEcCC--Cc----------------
Confidence 5899999999999998777778889999999987 46789999999999999974 22
Q ss_pred CChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEeecCCCCCCCCCC
Q 016432 109 FDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFL 188 (389)
Q Consensus 109 ~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve~~~~~~~g~~l 188 (389)
+.+++|+..||+++|.|||+|+|+..+++++++.|++.+..|.. ++++.++.|+++||++++|+|+++ -...|.
T Consensus 75 ---s~a~~f~~~Hgps~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g-~~e~~ipai~giggsllyfvd~~~--~~siyd 148 (363)
T COG3185 75 ---SFAAEFLDKHGPSACAMAFRVDDAEQALARALALGARTIDTEIG-AGEVDIPAIRGIGGSLLYFVDRYG--GRSIYD 148 (363)
T ss_pred ---chhhHHHHhcCCchheeEEeeCCHHHHHHHHHHcCCccccCCCC-CccccccceeccCCcEEEEeccCC--CCcccc
Confidence 37889999999999999999999999999999999988777765 368899999999999999999641 124688
Q ss_pred CCCccCCCCCCCCccccceeEeEEEEecC--CHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEe
Q 016432 189 PGFEPTDEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPM 266 (389)
Q Consensus 189 p~f~~~~~~~~~~~~~~~~~iDHv~~~V~--dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l 266 (389)
.+|++.+ ......+.++.+|||++.||. .|+.|+.||+++|||+...+++. .++.+|++|++|.+++|.|+|+|
T Consensus 149 ~~f~~~~-~~~~~~~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi---~~p~tgl~Sram~Sp~G~vrlpl 224 (363)
T COG3185 149 VEFEPNG-AQGASGGVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDI---PGPITGLRSRAMVSPCGKVRLPL 224 (363)
T ss_pred ccccccc-ccccccccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEec---cCCcccEEEeeEecCCCcEEeec
Confidence 8887762 212234567899999999995 99999999999999999998874 45678999999999999999999
Q ss_pred ccCCCCCCCCchHHHHHhhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHH
Q 016432 267 NEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQ 346 (389)
Q Consensus 267 ~e~~~~~~~~s~i~~fl~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~ 346 (389)
|++. +++|||++||..+.|+|||||||.|+||.+|+++|+++ |++||++| .+||+++.+|++ +++|+++.
T Consensus 225 N~s~---~~~sqi~efl~~y~G~GIQHIA~~T~dI~~tv~~lr~r----G~~fl~ip-~tYYd~~~~R~~--~~~e~ld~ 294 (363)
T COG3185 225 NESA---DDKSQIGEFLREYRGEGIQHIAFGTDDIYATVAALRER----GVKFLPIP-ETYYDDLDARFP--LHGEFLDA 294 (363)
T ss_pred ccCC---CchhHHHHHHHHhCCCcceEEEecccHHHHHHHHHHHc----CCccCCCc-hhHHHHHhhcCC--CChHHHHH
Confidence 9998 78899999999999999999999999999999999999 99999998 999999999988 89999999
Q ss_pred HHHcCceeecCCCc-eEEEEeccccCCCCceEEEEEEe-cCCCC
Q 016432 347 CEELGVLVDRDDQG-TLLQIFTKPVGDRYVHLLMLVTT-FSFSS 388 (389)
Q Consensus 347 l~~~~IL~D~D~~g-~llqift~~~~~~~~~FfE~iqR-~~~~~ 388 (389)
||+++||||+|++| .||||||+|+.+ ||||||||| +|+.|
T Consensus 295 Lr~~~IL~D~~~~~~~lLQift~~~~g--~~FFEiIeRR~g~~G 336 (363)
T COG3185 295 LRELEILYDGDGGGGELLQIFTRTFIG--PFFFEIIERRKGYQG 336 (363)
T ss_pred HHhcCeEeecCCCCcEEEEEecccccC--ceeEEEEEecccccc
Confidence 99999999999988 999999999977 499999999 66654
No 5
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=100.00 E-value=1e-45 Score=336.29 Aligned_cols=174 Identities=49% Similarity=0.827 Sum_probs=160.2
Q ss_pred ceeEeEEEEecC--CHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHH
Q 016432 206 IRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 283 (389)
Q Consensus 206 ~~~iDHv~~~V~--dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl 283 (389)
+++||||+++|+ |+++|+.||+++|||+..+.++.++ ...|+++.++.++++.++|+|++|..+ ...+++++|+
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~---~~~~~~s~~l~~~~g~i~l~L~~~~~~-~~~s~~~~fl 76 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIED---PYSGLRSRVLASPDGKIRIPLNEPASG-KRKSQIQEFL 76 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCc---CcccEEEEEEECCCCcEEEEEecCCCC-CCccHHHHHH
Confidence 468999999999 9999999999999999988776433 246789999999999999999998742 2679999999
Q ss_pred hhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEE
Q 016432 284 EHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (389)
Q Consensus 284 ~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~ll 363 (389)
+.++|+|+|||||.|+||++++++|+++ |++++.+| .+||++|.+|++..+.+++++.|+++|||||+|++|+||
T Consensus 77 ~~~~G~Gv~HIAf~vdDI~~~~~~L~~~----Gv~~l~~P-~~yy~~l~~r~~~~~~~~~~~~l~~~~il~d~~~~~~ll 151 (191)
T cd07250 77 EYYGGAGVQHIALATDDIFATVAALRAR----GVEFLPIP-DNYYDDLEARLDGILVDEDLDTLRELGILVDRDDGGYLL 151 (191)
T ss_pred HHhCCCceeEEEEECCCHHHHHHHHHHc----CCeeccCc-hhhHHHHHHhccccccchhHHHHHHCCEEEECCCCCEEE
Confidence 9988999999999999999999999999 99999998 999999999997556899999999999999999999999
Q ss_pred EEeccccCCCCceEEEEEEecCCCC
Q 016432 364 QIFTKPVGDRYVHLLMLVTTFSFSS 388 (389)
Q Consensus 364 qift~~~~~~~~~FfE~iqR~~~~~ 388 (389)
||||||+++|||||||||||+|+.|
T Consensus 152 q~ft~~~~~~~~~f~E~iqR~g~~g 176 (191)
T cd07250 152 QIFTKPVFDRPTFFFEIIQRRGYTG 176 (191)
T ss_pred EEeccCCCCCCCeEEEEEEEcCCCc
Confidence 9999999999999999999999876
No 6
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=99.90 E-value=3.2e-24 Score=183.59 Aligned_cols=126 Identities=33% Similarity=0.478 Sum_probs=100.8
Q ss_pred cCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccC
Q 016432 21 QNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAG 100 (389)
Q Consensus 21 ~~~~~~~~~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~ 100 (389)
+||+ ++.+++||+|+|++.+++..++ ..|||+.++++ |++.+.+++||+++|+||+. |+
T Consensus 2 ~nP~----g~~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~h------rsk~v~l~rQG~I~~vln~e--p~-------- 60 (139)
T PF14696_consen 2 DNPL----GLDGFDFVEFAVPDAQALAQLF-TALGFQPVARH------RSKDVTLYRQGDINFVLNSE--PD-------- 60 (139)
T ss_dssp --TT-----EEEEEEEEEE-SSTTSCHHHH-CCCCEEEECCE------CCCSEEEEEETTEEEEEEEE--ST--------
T ss_pred CCCC----CCCCeEEEEEecCCHHHHHHHH-HHhCcceEEec------CCcceEEEEeCCEEEEEeCC--Cc--------
Confidence 4666 7999999999999965555555 69999999988 45678999999999999983 33
Q ss_pred CCCCCCCCCChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEeecC
Q 016432 101 NSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK 179 (389)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve~~ 179 (389)
+.++.|++.||+|||.|||+|+|+++++++|+++|++.+.+|.. .++..+|+|+++||++|||||+.
T Consensus 61 -----------s~a~~~~~~HG~sv~aiafrV~Da~~A~~rA~~~GA~~~~~~~~-~~e~~~paI~g~G~sl~yfVdr~ 127 (139)
T PF14696_consen 61 -----------SFAAEFAAQHGPSVCAIAFRVDDAAAAYERAVALGAEPVQEPTG-PGELNIPAIRGIGGSLHYFVDRY 127 (139)
T ss_dssp -----------SCHHHHHHHHSSEEEEEEEEES-HHHHHHHHHHTT--EEEEEEE-TT-BEEEEEE-CCC-EEEEEE--
T ss_pred -----------chHHHHHHhcCCEEEEEEEEeCCHHHHHHHHHHcCCcCcccCCC-CCcEeeeeEEccCCCEEEEEecC
Confidence 26788999999999999999999999999999999999988876 46899999999999999999963
No 7
>PLN02300 lactoylglutathione lyase
Probab=99.89 E-value=7.2e-21 Score=183.61 Aligned_cols=227 Identities=18% Similarity=0.252 Sum_probs=156.2
Q ss_pred CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcC--C--EEEEEEccCCCCCccccccCCC
Q 016432 27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--D--LRFVFTAPYSPSISDAADAGNS 102 (389)
Q Consensus 27 ~~~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g--~--~~i~l~~p~~~~~~~~~~~~~~ 102 (389)
.+.+.+++||.|.|+|++++++||++.|||++..+...+.+. .....+..| + ..+.+.......
T Consensus 19 ~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~--~~~~~l~~g~~~~~~~lel~~~~~~~---------- 86 (286)
T PLN02300 19 KKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEK--YTNAFLGYGPEDSNFVVELTYNYGVD---------- 86 (286)
T ss_pred ccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCc--EEEEEEccCCCCCceEEEEeccCCCC----------
Confidence 357999999999999999999999999999987654332221 112223322 2 334443211100
Q ss_pred CCCCCCCChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccC-ceEEEEEEecCCeEEEEeecCCC
Q 016432 103 SASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN-LAVIAEVQLYGDVVLRYVSYKDK 181 (389)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~-~~~~~~v~~~gg~~~~fve~~~~ 181 (389)
. ..++.|..|+||.|+|+++++++++++|+++..+|...++ ......+++|+|..++|+++ .
T Consensus 87 ----------~-----~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~--~ 149 (286)
T PLN02300 87 ----------K-----YDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQR--G 149 (286)
T ss_pred ----------c-----cccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeC--C
Confidence 0 0135688899999999999999999999998887755433 34567889999999999873 1
Q ss_pred CCCCCCCCCCccCCCCCCCCccccceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEc--CC
Q 016432 182 ANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN--ND 259 (389)
Q Consensus 182 ~~~g~~lp~f~~~~~~~~~~~~~~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~--~~ 259 (389)
. ...+++|+.+.|+|++++..||+++|||+..+....++ .+.....+.. ..
T Consensus 150 ~----------------------~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~-----~~~~~~~~~~~~~~ 202 (286)
T PLN02300 150 P----------------------TPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPE-----YKYTIAMMGYGPED 202 (286)
T ss_pred C----------------------CCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccc-----cceEEEEEecCCCC
Confidence 0 12356799999999999999999999999976543221 1222222321 11
Q ss_pred cceEEEeccCCCCCCCCchHHHHHhhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 260 EMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 260 g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
....+++.... ... ++ ..|+|.+|++|.|+||++++++++++ |++++.+|
T Consensus 203 ~~~~lel~~~~----~~~---~~---~~g~~~~~i~~~v~di~~~~~~~~~~----G~~v~~~p 252 (286)
T PLN02300 203 KTTVLELTYNY----GVT---EY---TKGNAYAQIAIGTDDVYKTAEAIKLV----GGKITREP 252 (286)
T ss_pred CccEEEEeecC----CCC---cc---ccCCceeEEEEecCCHHHHHHHHHHc----CCeEecCC
Confidence 12234432221 100 11 24678999999999999999999999 99999876
No 8
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.88 E-value=1.8e-20 Score=181.89 Aligned_cols=251 Identities=16% Similarity=0.190 Sum_probs=158.3
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEc---CCEEEEEEccCCCCCccccccCCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS---GDLRFVFTAPYSPSISDAADAGNSSASL 106 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~---g~~~i~l~~p~~~~~~~~~~~~~~~~~~ 106 (389)
+++++||.|.|+|++++++||++.|||++..+.+ . .+++... +...+++...
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~----~---~~~~~~~~~~~~~~~~l~~~------------------ 56 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG----Q---RVYLKAWDEWDHYSVILTEA------------------ 56 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC----c---eEEEEeccccccceEeeccC------------------
Confidence 6889999999999999999999999999876532 1 1122111 1223333211
Q ss_pred CCCChHHHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeec-cCceEEEEEEecCCeEEEEeecCCCC
Q 016432 107 PTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVSYKDKA 182 (389)
Q Consensus 107 ~~~~~~~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~-~~~~~~~~v~~~gg~~~~fve~~~~~ 182 (389)
...|+.|+||.|+ |+++++++++++|+++...|... .+......+++|+|..++++.....
T Consensus 57 --------------~~~g~~hiaf~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~- 121 (303)
T TIGR03211 57 --------------DTAGLDHMAFKVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEY- 121 (303)
T ss_pred --------------CCCceeEEEEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEcccc-
Confidence 1237899999998 89999999999999987655421 1223456788999999999873211
Q ss_pred CCCCCCCCCccCCCCCCCCccccceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCc-eEEEEEcCCcc
Q 016432 183 NHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGL-NSVVLANNDEM 261 (389)
Q Consensus 183 ~~g~~lp~f~~~~~~~~~~~~~~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~-~s~~~~~~~g~ 261 (389)
. ........+..... ...++.+++|+||++.|+|++++.+||+++|||+.......++ .+. ...++....+.
T Consensus 122 ~-~~~~~~~~~~~~~~-~~~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 194 (303)
T TIGR03211 122 V-GELVGGLNPDPWPD-PLRGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGD-----GKEQAAAWLSVSNKA 194 (303)
T ss_pred c-cccccccCCccccc-ccCCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCC-----CcEEEEEEEEcCCCC
Confidence 1 10001111111000 1234568999999999999999999999999999865433211 111 12223222111
Q ss_pred eEEEeccCCCCCCCCchHHHHHhhcCCCC-cceEEEEeCC---HHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCC
Q 016432 262 VLLPMNEPVFGTKRKSQIQTYLEHNEGAG-VQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGD 337 (389)
Q Consensus 262 v~l~l~e~~~~~~~~s~i~~fl~~~~g~G-vqHiAf~vdD---I~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~ 337 (389)
..+.+ ... .+.| ++||||.|+| +.+++++|+++ |++++..| .... .+
T Consensus 195 ~~~~~----------------~~~-~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~----G~~~~~~p-~~~~------~~- 245 (303)
T TIGR03211 195 HDIAF----------------VGD-PEPGKLHHVSFFLDSWEDVLKAADVMSKN----DVSIDIGP-TRHG------IT- 245 (303)
T ss_pred cccce----------------ecC-CCCCceEEEEEEcCCHHHHHHHHHHHHhC----CCceeeCC-cccC------CC-
Confidence 11111 111 2345 9999999986 56688899999 99988776 3211 00
Q ss_pred CCChhhHHHHHHcCceeecCCCceEEEEec
Q 016432 338 VLTDEQIKQCEELGVLVDRDDQGTLLQIFT 367 (389)
Q Consensus 338 ~~~~~~~~~l~~~~IL~D~D~~g~llqift 367 (389)
..-.+|=+|.+|.++.+++
T Consensus 246 -----------~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 246 -----------RGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred -----------CceEEEEECCCCCEEEEec
Confidence 0013455677788888773
No 9
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.87 E-value=1.1e-19 Score=175.42 Aligned_cols=243 Identities=20% Similarity=0.192 Sum_probs=158.7
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEc---C-CEEEEEEccCCCCCccccccCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS---G-DLRFVFTAPYSPSISDAADAGNSSAS 105 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~---g-~~~i~l~~p~~~~~~~~~~~~~~~~~ 105 (389)
|.+++||.|.|+|++++++||+++|||++....+ . ...++. + ...+.+...
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~----~~~~~~~~~~~~~~l~l~~~----------------- 56 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK----E----YIYLRGIEEFQHHSLVLTKA----------------- 56 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----C----eEEEeccCcCCceEEEeeeC-----------------
Confidence 7899999999999999999999999999876532 1 112221 1 223443321
Q ss_pred CCCCChHHHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEeecCCCC
Q 016432 106 LPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKA 182 (389)
Q Consensus 106 ~~~~~~~~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve~~~~~ 182 (389)
...++.|+||.|+ |+++++++++++|+++...+.. ...+...+++|+|..++|+.....
T Consensus 57 ---------------~~~~~~hiaf~v~~~~dl~~~~~~l~~~Gv~v~~~~~~--~~~~~~~~~DPdG~~iEl~~~~~~- 118 (294)
T TIGR02295 57 ---------------PSAALSYIGFRVSKEEDLDKAADFFQKLGHPVRLVRDG--GQPEALRVEDPFGYPIEFYFEMEK- 118 (294)
T ss_pred ---------------CCcCccEEEEEeCCHHHHHHHHHHHHhcCCcEEeecCC--CCceEEEEECCCCCEEEEEEchhh-
Confidence 1236789999997 8999999999999987655432 233677889999999999873111
Q ss_pred CCCCCCC-CCccCCCCCCCCccccceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccC-ceEEEEEcCCc
Q 016432 183 NHLDFLP-GFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG-LNSVVLANNDE 260 (389)
Q Consensus 183 ~~g~~lp-~f~~~~~~~~~~~~~~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g-~~s~~~~~~~g 260 (389)
..-++ .+. ...+..+.+|+|+++.|+|++++.+||+++|||+........ .| ....++.....
T Consensus 119 --~~~~~~~~~-------~~~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~------~~~~~~~~~~~~~~ 183 (294)
T TIGR02295 119 --VERLLRRYH-------RHRGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDD------EGNLAAAWLHRKGG 183 (294)
T ss_pred --ccccccccc-------ccCCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccC------CCcEEEEEEecCCC
Confidence 00011 110 112346889999999999999999999999999987543211 12 12222222212
Q ss_pred ceEEEeccCCCCCCCCchHHHHHhhcCCCCcceEEEEeCC---HHHHHHHHHHhcCCCCce--ecCCCChhhhHhHhhhh
Q 016432 261 MVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFE--FMPSPPPTYYKNLKNRA 335 (389)
Q Consensus 261 ~v~l~l~e~~~~~~~~s~i~~fl~~~~g~GvqHiAf~vdD---I~~a~~~l~~~~~~~Gv~--~l~~P~~~YY~~l~~r~ 335 (389)
...+.+.. ..++|++|+||.|+| +.+..++|+++ |++ +...| . |-
T Consensus 184 ~~~~~~~~-----------------~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~----G~~~~~~~~p-~--------~~ 233 (294)
T TIGR02295 184 VHDIALTN-----------------GNGPRLHHIAYWVHDPLNIIKACDILASA----GLSDSIERGP-G--------RH 233 (294)
T ss_pred cCceEeec-----------------CCCCceeeEEEEcCCHHHHHHHHHHHHhC----CCCcccccCC-c--------cC
Confidence 22222211 134689999999999 55678999999 987 33333 1 11
Q ss_pred CCCCChhhHHHHHHcCceeecCCCceEEEEecccc
Q 016432 336 GDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV 370 (389)
Q Consensus 336 ~~~~~~~~~~~l~~~~IL~D~D~~g~llqift~~~ 370 (389)
+. ...-.+|=+|.+|.++.+++.++
T Consensus 234 ~~----------~~~~~~y~~DP~G~~iEl~~~~~ 258 (294)
T TIGR02295 234 GV----------SNAFFLYLRDPDGHRIELYTGDY 258 (294)
T ss_pred CC----------CcceEEEEECCCCCEEEEEeccc
Confidence 10 00011455688999999999885
No 10
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.86 E-value=1.6e-19 Score=173.97 Aligned_cols=252 Identities=16% Similarity=0.119 Sum_probs=161.1
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcC--CEEEEEEccCCCCCccccccCCCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--DLRFVFTAPYSPSISDAADAGNSSASLP 107 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g--~~~i~l~~p~~~~~~~~~~~~~~~~~~~ 107 (389)
|.+++||.|.|+|++++++||++.|||++....+ .+. . .++.+ ...+.+... +
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~~----~-~~~~~~~~~~~~l~~~--~---------------- 55 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--NDA----L-YLRLDSRAHRIAVHPG--E---------------- 55 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cce----E-EEEcCCCceEEEEEEC--C----------------
Confidence 5789999999999999999999999999764321 111 2 22333 445655431 0
Q ss_pred CCChHHHHHHHHhcCCceeEEEEEEcC---HHHHHHHHHHCCCcccCCCee---ccCceEEEEEEecCCeEEEEeecCCC
Q 016432 108 TFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVI---LDNLAVIAEVQLYGDVVLRYVSYKDK 181 (389)
Q Consensus 108 ~~~~~~~~~~l~~hg~gv~~iaf~V~D---vda~~~~a~a~Ga~~i~~P~~---~~~~~~~~~v~~~gg~~~~fve~~~~ 181 (389)
..++.+++|.|+| ++++.++|+++|+++...|.. ..+......+++|+|..++|+.....
T Consensus 56 --------------~~~~~~~~f~V~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~ 121 (286)
T TIGR03213 56 --------------SDDLAYAGWEVADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVE 121 (286)
T ss_pred --------------cCCeeeEeeeeCCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccc
Confidence 1256789999998 899999999999998765531 12334678889999999998862111
Q ss_pred CCCCCCCCCCccCCCCCCCCccccceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCc--eEEEEEcCC
Q 016432 182 ANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGL--NSVVLANND 259 (389)
Q Consensus 182 ~~~g~~lp~f~~~~~~~~~~~~~~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~--~s~~~~~~~ 259 (389)
.....+.. +.. .. .. .....+|+||++.|+|++++++||+++|||++......+. ..|. ...++.+.+
T Consensus 122 ~~~~~~~~---~~~-~~-~~-~~~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~----~~g~~~~~~~l~~~~ 191 (286)
T TIGR03213 122 DFEKPFVS---PRA-VS-GF-VTGDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPA----GPGVTVRPYFLHCNE 191 (286)
T ss_pred cCCCCCCC---CCC-CC-cc-ccCCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccC----CCCCcceEEEEEECC
Confidence 00001111 000 00 01 1236899999999999999999999999999875533211 1121 223444332
Q ss_pred cceEEEeccCCCCCCCCchHHHHHhhcCCCCcceEEEEeCCHHH---HHHHHHHhcCCCCceecCCCChhhhHhHhhhhC
Q 016432 260 EMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFR---TLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG 336 (389)
Q Consensus 260 g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~GvqHiAf~vdDI~~---a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~ 336 (389)
....+.+.... ...|++||||.|+|+.+ .+++|+++ |+ ....| . |-+
T Consensus 192 ~~~~~~l~~~~----------------~~~~~~Hiaf~v~d~~~v~~~~~~l~~~----G~-~~~~~-~--------r~~ 241 (286)
T TIGR03213 192 RHHSLAFAAGP----------------SEKRLNHLMLEVDTLDDVGLALDRVDAD----GI-VASTL-G--------RHT 241 (286)
T ss_pred CcceEEEecCC----------------CCCceEEEEEEcCCHHHHHHHHHHHHHC----CC-EEecC-C--------cCC
Confidence 33334332111 24579999999998776 89999999 98 33333 1 111
Q ss_pred CCCChhhHHHHHHcCceeecCCCceEEEEecccc
Q 016432 337 DVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV 370 (389)
Q Consensus 337 ~~~~~~~~~~l~~~~IL~D~D~~g~llqift~~~ 370 (389)
. ...--+|=+|.+|+++.++|--.
T Consensus 242 ~----------~~~~~~y~~DP~G~~iE~~~~~~ 265 (286)
T TIGR03213 242 N----------DHMVSFYVATPSGWLVEYGWGAR 265 (286)
T ss_pred C----------CCeEEEEEECCCCcEEEeecCcE
Confidence 0 00112455789999999998543
No 11
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.85 E-value=6.3e-20 Score=157.43 Aligned_cols=136 Identities=40% Similarity=0.607 Sum_probs=113.9
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChH
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (389)
|+||.|+|+|++++++||+++|||++..+...+ + ..+..+.+|+..++|..+..+. .
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~-~---~~~~~~~~g~~~l~l~~~~~~~-------------------~ 57 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE-D---KASYLLRQGDINFVLNSPLNSF-------------------A 57 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC-c---eEEEEEEcCCEEEEEecCCCCC-------------------C
Confidence 689999999999999999999999998875432 1 2356667889999988764332 1
Q ss_pred HHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEeecCCCCCCCCCCCCCc
Q 016432 113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFE 192 (389)
Q Consensus 113 ~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve~~~~~~~g~~lp~f~ 192 (389)
....++..++.|+.||||.|+|+++++++++++|++++.+|+..+...+.+.+++|+|..++|+++ .+|+|.|+|+|+
T Consensus 58 ~~~~~~~~~~~g~~hia~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~--~~~~~~~~~~~~ 135 (136)
T cd08342 58 PVADFLEKHGDGVCDVAFRVDDAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDR--KGYKGPFLPGFE 135 (136)
T ss_pred chHHHHHhcCCceEEEEEEeCCHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEec--CCCCCccCCCCC
Confidence 334566778889999999999999999999999999999998855677899999999999999995 678899999997
Q ss_pred c
Q 016432 193 P 193 (389)
Q Consensus 193 ~ 193 (389)
|
T Consensus 136 ~ 136 (136)
T cd08342 136 P 136 (136)
T ss_pred C
Confidence 5
No 12
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.62 E-value=5.2e-15 Score=127.10 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=94.1
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCC-------Cc--eeEEEEEEE--cCCEEEEEEccCCCCCccccc
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLST-------GN--TVHASYLLR--SGDLRFVFTAPYSPSISDAAD 98 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~-------g~--r~~~~~~~~--~g~~~i~l~~p~~~~~~~~~~ 98 (389)
+.+++||+|+|+|++++++||++ |||+.......++ |. ....+.++. .|+..|+|.++..+....
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~--- 76 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIA--- 76 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcC---
Confidence 47899999999999999999997 9998765432111 10 112334444 467889988865443100
Q ss_pred cCCCCCCCCCCChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 99 AGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
. . .....++.|+.||||.|+|+++++++++++|++++.+|....+..+...+++|+|..++|++
T Consensus 77 -------~------~--~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 77 -------D------H--RPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAE 140 (142)
T ss_pred -------c------C--CCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence 0 0 01122456899999999999999999999999998877655456778899999999999987
No 13
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.57 E-value=8.3e-14 Score=116.72 Aligned_cols=125 Identities=19% Similarity=0.273 Sum_probs=92.8
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
+|+||.++|+|++++++||++.|||+.......++.+ ...++++.|+..+.|.++....
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~--~~~~~~~~~~~~i~l~~~~~~~------------------- 59 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQG--VKVVFIALGNTKVELLEPLGED------------------- 59 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCC--cEEEEEecCCEEEEEEecCCCC-------------------
Confidence 4899999999999999999999999987653222211 2356667778888887653222
Q ss_pred HHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCC-CeeccCceEEEEE--EecCCeEEEEee
Q 016432 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSP-PVILDNLAVIAEV--QLYGDVVLRYVS 177 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~-P~~~~~~~~~~~v--~~~gg~~~~fve 177 (389)
.....++..++.|+.||||.|+|+++++++++++|++++.+ |.....+.....+ ++|+|..++++|
T Consensus 60 ~~~~~~~~~~~~g~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 60 SPIAKFLEKNGGGIHHIAIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred ChHHHHHhcCCCceEEEEEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 12344555667799999999999999999999999999875 6554344445555 688888887764
No 14
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.55 E-value=7.5e-14 Score=127.04 Aligned_cols=110 Identities=18% Similarity=0.164 Sum_probs=87.3
Q ss_pred cceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEE--cCCEEEEEEccCCCCCccccccCCCCCC
Q 016432 30 VNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR--SGDLRFVFTAPYSPSISDAADAGNSSAS 105 (389)
Q Consensus 30 i~~l~HI~~~V~--D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~--~g~~~i~l~~p~~~~~~~~~~~~~~~~~ 105 (389)
+.+++||.++|+ |+++|++||+++|||++......++......+.++. +|++.|+|++|..+..
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~------------ 68 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKR------------ 68 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCC------------
Confidence 468999999999 999999999999999998876543322223344455 4679999998764210
Q ss_pred CCCCChHHHHHHHHhc-CCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeec
Q 016432 106 LPTFDHAACRSFAASH-GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL 156 (389)
Q Consensus 106 ~~~~~~~~~~~~l~~h-g~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~ 156 (389)
.+.+..|+..| |.|+.||||.|+|+++++++++++|++++.+|...
T Consensus 69 -----~s~~~~fl~~~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~y 115 (191)
T cd07250 69 -----KSQIQEFLEYYGGAGVQHIALATDDIFATVAALRARGVEFLPIPDNY 115 (191)
T ss_pred -----ccHHHHHHHHhCCCceeEEEEECCCHHHHHHHHHHcCCeeccCchhh
Confidence 03678888887 78999999999999999999999999999888654
No 15
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.54 E-value=3.2e-14 Score=117.42 Aligned_cols=97 Identities=24% Similarity=0.443 Sum_probs=80.8
Q ss_pred eEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCC
Q 016432 210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGA 289 (389)
Q Consensus 210 DHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~ 289 (389)
|||++.|+|+++++.||+++||++..+....+ ..+++..++..+++.+.|+|.+|.. .. .+++. ++.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~-----~~~v~~~~~~~~~~~~~iELi~p~~---~~----~~~~~-~~~ 67 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDE-----PQGVRVAFLYLGDGPVQIELIQPLD---GD----SPLDR-GGG 67 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEG-----CTTEEEEEEEETTETEEEEEEEESS---TT----CHHHH-TSS
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecC-----CCCEEEEEEEeCCCcEEEEEEEeCC---CC----ccccc-CCC
Confidence 79999999999999999999999987665432 3567777788877779999999973 33 34555 688
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 290 GVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 290 GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
|++||||.|+||++++++|+++ |++++..+
T Consensus 68 gi~Hia~~v~D~d~~~~~l~~~----G~~~~~~~ 97 (109)
T PF13669_consen 68 GIHHIAFEVDDLDAAIARLEAQ----GFRVLDEG 97 (109)
T ss_dssp EEEEEEEEESHHHHHHHHHHHT----TECEEECE
T ss_pred CEEEEEEEeCCHHHHHHHHHHC----CCEEcccC
Confidence 9999999999999999999999 99998765
No 16
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.54 E-value=2.1e-13 Score=116.91 Aligned_cols=98 Identities=21% Similarity=0.310 Sum_probs=77.3
Q ss_pred EeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCC
Q 016432 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (389)
Q Consensus 209 iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g 288 (389)
|||++++|+|++++++||+++|||++.++...+ +.....+. ++.+.|.|..+. ...+...++++. .+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~-------~~~~~~~~--~g~~~l~l~~~~---~~~~~~~~~~~~-~~ 67 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE-------DKASYLLR--QGDINFVLNSPL---NSFAPVADFLEK-HG 67 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC-------ceEEEEEE--cCCEEEEEecCC---CCCCchHHHHHh-cC
Confidence 689999999999999999999999988764321 22233333 456778887665 334555667665 46
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 289 ~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.|++||||.|+||++++++|+++ |++++.+|
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~~----G~~v~~~p 98 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVAR----GAKPVQEP 98 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHHc----CCeEccCc
Confidence 78999999999999999999999 99999988
No 17
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.53 E-value=2.8e-13 Score=113.15 Aligned_cols=124 Identities=18% Similarity=0.208 Sum_probs=92.6
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCC-CCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLS-TGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~-~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
|+||.|+|+|++++++||.+.|||++......+ .+. .....++.++..+.|.++..+..
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~--~~~~~~~~~~~~l~l~~~~~~~~------------------ 60 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQG--VRVAFLGLGNVQIELIEPLDDDS------------------ 60 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccc--cEEEEEEcCCEEEEEEEECCCCC------------------
Confidence 589999999999999999999999998765432 111 22456677899998887643321
Q ss_pred HHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCe-eccCceEEEEEEecC--CeEEEEee
Q 016432 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPV-ILDNLAVIAEVQLYG--DVVLRYVS 177 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~-~~~~~~~~~~v~~~g--g~~~~fve 177 (389)
....+...++.|++|+||.|+|+++++++++++|++++.+|. ...+...+..+.+++ |..++|++
T Consensus 61 -~~~~~~~~~~~g~~h~~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 61 -PIAKFLEKRGEGLHHIAFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred -cHHHHHhcCCCceEEEEEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 222334557789999999999999999999999999988775 323345566666666 77777764
No 18
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.50 E-value=1.5e-13 Score=117.94 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=76.7
Q ss_pred ceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccc-cc---c--ccCceEEEEEcCCcceEEEeccCCCCCCCCchH
Q 016432 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDV-GT---S--ESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQI 279 (389)
Q Consensus 206 ~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~-~~---~--~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i 279 (389)
+.+++|+++.|.|++++++||++ |||+.......++. .. . ..+.+...+..+++...|+|.++... .....
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~-~~~~~- 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHP-AVIAD- 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCC-CCcCc-
Confidence 46899999999999999999998 99987654332110 00 0 11234556666677888888765421 11100
Q ss_pred HHHHhhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 280 QTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 280 ~~fl~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
..+.. .++.|++||||.|+|+++++++|+++ |++++.+|
T Consensus 78 ~~~~~-~~~~g~~hia~~v~d~d~~~~~l~~~----G~~~~~~~ 116 (142)
T cd08353 78 HRPAP-VNALGLRRVMFAVDDIDARVARLRKH----GAELVGEV 116 (142)
T ss_pred CCCCC-CCCCCceEEEEEeCCHHHHHHHHHHC----CCceeCCc
Confidence 01222 24678999999999999999999999 99999865
No 19
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.49 E-value=3.1e-13 Score=111.49 Aligned_cols=95 Identities=22% Similarity=0.177 Sum_probs=75.7
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC--EEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 34 ~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~--~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
+||+|.|+|+++|++||++.||+++......+.. .....++..++ +.|+|.+|..+.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~--~v~~~~~~~~~~~~~iELi~p~~~~------------------- 59 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQ--GVRVAFLYLGDGPVQIELIQPLDGD------------------- 59 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCT--TEEEEEEEETTETEEEEEEEESSTT-------------------
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCC--CEEEEEEEeCCCcEEEEEEEeCCCC-------------------
Confidence 7999999999999999999999998765432222 23455566665 899999987543
Q ss_pred HHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCC
Q 016432 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP 153 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P 153 (389)
.++..++.|++||||.|+|++++.++|+++|++++.++
T Consensus 60 ----~~~~~~~~gi~Hia~~v~D~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 60 ----SPLDRGGGGIHHIAFEVDDLDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp ----CHHHHTSSEEEEEEEEESHHHHHHHHHHHTTECEEECE
T ss_pred ----cccccCCCCEEEEEEEeCCHHHHHHHHHHCCCEEcccC
Confidence 23455899999999999999999999999999988765
No 20
>PLN02367 lactoylglutathione lyase
Probab=99.49 E-value=7.5e-13 Score=122.67 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=97.2
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEE-------------------cCCEEEEEEccCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR-------------------SGDLRFVFTAPYSP 91 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~-------------------~g~~~i~l~~p~~~ 91 (389)
-.+.|+.+.|+|++++++||+++|||++..+.+.+++. ...+++. .++..|+|..+.+.
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~--f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~ 151 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMK--FSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGT 151 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCc--EEEEEeecCCccccccccccceeeccCCCCEEEEecCCCC
Confidence 57999999999999999999999999998876655433 2344442 12357888876543
Q ss_pred CCccccccCCCCCCCCCCChHHHHHHHHhcC--CceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecC
Q 016432 92 SISDAADAGNSSASLPTFDHAACRSFAASHG--LAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYG 169 (389)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~hg--~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~g 169 (389)
+. + ..+..|+...+ .|..||||.|+|+++++++++++|++++.+|.... ..+++++++|+
T Consensus 152 e~--~---------------~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~-~~riaFIkDPD 213 (233)
T PLN02367 152 ES--D---------------PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGK-MKGIAFIKDPD 213 (233)
T ss_pred Cc--c---------------ccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCC-ceEEEEEECCC
Confidence 21 0 12334544443 48999999999999999999999999998887543 25688999999
Q ss_pred CeEEEEeec
Q 016432 170 DVVLRYVSY 178 (389)
Q Consensus 170 g~~~~fve~ 178 (389)
|..++|++.
T Consensus 214 Gn~IEL~e~ 222 (233)
T PLN02367 214 GYWIEIFDL 222 (233)
T ss_pred CCEEEEEec
Confidence 999999984
No 21
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.48 E-value=8.6e-13 Score=119.28 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=92.4
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEE-------------------cCCEEEEEEccCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR-------------------SGDLRFVFTAPYSP 91 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~-------------------~g~~~i~l~~p~~~ 91 (389)
..+.|+.|+|.|++++++||+++|||++..+...+++. ...+++. .++..|+|..+...
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~--~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~ 103 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMK--FSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGT 103 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCc--eEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCC
Confidence 45999999999999999999999999998775443332 2233332 23457888875432
Q ss_pred CCccccccCCCCCCCCCCChHHHHHHHHhc--CCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecC
Q 016432 92 SISDAADAGNSSASLPTFDHAACRSFAASH--GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYG 169 (389)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h--g~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~g 169 (389)
.+. ....+|.... +.|+.||||+|+|+++++++++++|+++...|.... ..++.++++|+
T Consensus 104 ~~~-----------------p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~-~~~~~fi~DPd 165 (185)
T PLN03042 104 ESD-----------------PEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK-MKGLAFIKDPD 165 (185)
T ss_pred ccc-----------------ccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC-ceeEEEEECCC
Confidence 210 0111232222 248999999999999999999999999887775432 35678889999
Q ss_pred CeEEEEeec
Q 016432 170 DVVLRYVSY 178 (389)
Q Consensus 170 g~~~~fve~ 178 (389)
|..++|++.
T Consensus 166 G~~IEl~e~ 174 (185)
T PLN03042 166 GYWIEIFDL 174 (185)
T ss_pred CCEEEEEEC
Confidence 999999984
No 22
>PRK11478 putative lyase; Provisional
Probab=99.48 E-value=8.3e-13 Score=111.14 Aligned_cols=127 Identities=15% Similarity=0.109 Sum_probs=86.6
Q ss_pred CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCC
Q 016432 28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP 107 (389)
Q Consensus 28 ~~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~ 107 (389)
+.+.+++||.++|+|++++++||++.|||++......+....+. ..+.-.|+..+.|.+...+...+
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~~------------ 68 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWK-GDLALNGQYVIELFSFPFPPERP------------ 68 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccce-eeEecCCCcEEEEEEecCCCCCC------------
Confidence 35788999999999999999999999999986432111111111 11222456667666532221100
Q ss_pred CCChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 108 ~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
. ..+..|+.||||.|+|+++++++++++|+++...+........+..+++|+|..+++++
T Consensus 69 -----~-----~~~~~g~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 69 -----S-----RPEACGLRHLAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred -----C-----CCCCCceeEEEEEeCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 0 01234789999999999999999999999976443332234567888999999998876
No 23
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.44 E-value=9.4e-13 Score=130.87 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=90.0
Q ss_pred CCCCcceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEE--cCCEEEEEEccCCCCCccccccCC
Q 016432 26 DRFRVNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR--SGDLRFVFTAPYSPSISDAADAGN 101 (389)
Q Consensus 26 ~~~~i~~l~HI~~~V~--D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~--~g~~~i~l~~p~~~~~~~~~~~~~ 101 (389)
..+.+.+++||.++|+ |+++++.||+++|||++..+...++......+.++. .|++.|.|++|.....
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~-------- 223 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKD-------- 223 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCC--------
Confidence 4567899999999999 999999999999999998876543322222233344 4779999998753210
Q ss_pred CCCCCCCCChHHHHHHHHhc-CCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeec
Q 016432 102 SSASLPTFDHAACRSFAASH-GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL 156 (389)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~~h-g~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~ 156 (389)
.+.+.+|+..| |.|+.||||+|+|+++++++|+++|++++.+|...
T Consensus 224 ---------~s~i~~fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~y 270 (353)
T TIGR01263 224 ---------KSQIEEFLEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPDTY 270 (353)
T ss_pred ---------CCHHHHHHHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCHHH
Confidence 03678899888 78999999999999999999999999999888653
No 24
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.44 E-value=2.3e-12 Score=106.83 Aligned_cols=125 Identities=17% Similarity=0.131 Sum_probs=86.6
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~ 109 (389)
+.+++||+|.|.|++++++||++.|||+.........+..+ ...+...++..+++........ .
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~-~~~~~~~~~~~i~l~~~~~~~~------------~--- 64 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSY-KLDLLLNGGYQLELFSFPNPPE------------R--- 64 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcE-EEEEecCCCcEEEEEEcCCCCC------------C---
Confidence 36899999999999999999999999998765322221222 1222234566666654322110 0
Q ss_pred ChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 110 DHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 110 ~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
.. ...+.|+.|+||+|+|+++++++|+++|+++..+|...........+++|+|..+++++
T Consensus 65 ---~~----~~~~~g~~h~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 65 ---PS----YPEACGLRHLAFSVEDIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred ---CC----CCcCCCceEEEEEeCCHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 00 01234889999999999999999999999987766543334557778899999888764
No 25
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.39 E-value=3.3e-12 Score=127.40 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=88.1
Q ss_pred CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCC-C--ceeEEEEEEEc--CCEEEEEEccCCCCCccccccCC
Q 016432 27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLST-G--NTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGN 101 (389)
Q Consensus 27 ~~~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~-g--~r~~~~~~~~~--g~~~i~l~~p~~~~~~~~~~~~~ 101 (389)
..++.+||||.++|++++.++.||.+.|||+..+....++ + ...+.+.++.. |.+.|.|++|..... .
T Consensus 175 ~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~-~------ 247 (398)
T PLN02875 175 DYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTK-R------ 247 (398)
T ss_pred CCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCC-C------
Confidence 3458899999999999999999999999999887543221 1 11234666676 459999999864210 0
Q ss_pred CCCCCCCCChHHHHHHHHhc-CCceeEEEEEEcCHHHHHHHHHHC----CCcccCCC
Q 016432 102 SSASLPTFDHAACRSFAASH-GLAARSIAVEVEDADVAFNTSVAH----GAKPSSPP 153 (389)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~~h-g~gv~~iaf~V~Dvda~~~~a~a~----Ga~~i~~P 153 (389)
.+++.+||+.+ |+||+||||+|+|+.+++++|+++ |++++..|
T Consensus 248 ---------~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 248 ---------KSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred ---------cChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 04899999999 589999999999999999999999 99998865
No 26
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.38 E-value=8.1e-12 Score=110.56 Aligned_cols=128 Identities=15% Similarity=0.117 Sum_probs=88.6
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEec--CCC------------Cc--eeEEEEEEEcC-CEEEEEEccCCCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSD--LST------------GN--TVHASYLLRSG-DLRFVFTAPYSPSI 93 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~--~~~------------g~--r~~~~~~~~~g-~~~i~l~~p~~~~~ 93 (389)
.+++||.+.|+|+++|++||+++|||++..+.. .+. |. ......+++.+ +..|+|.++.++..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 679999999999999999999999998764210 000 11 11334555543 46688887654331
Q ss_pred ccccccCCCCCCCCCCChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCC-Ceec-c--CceEEEEEEecC
Q 016432 94 SDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSP-PVIL-D--NLAVIAEVQLYG 169 (389)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~-P~~~-~--~~~~~~~v~~~g 169 (389)
+...+ ..++.|..|+||.|+|+++++++++++|++++.+ |... . .......+++|+
T Consensus 83 -------------------~~~~~-~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPd 142 (162)
T TIGR03645 83 -------------------PEDNF-EYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPF 142 (162)
T ss_pred -------------------CCccc-ccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCC
Confidence 00111 1235689999999999999999999999876543 3211 1 124678899999
Q ss_pred CeEEEEeec
Q 016432 170 DVVLRYVSY 178 (389)
Q Consensus 170 g~~~~fve~ 178 (389)
|..++|+++
T Consensus 143 G~~iEl~~~ 151 (162)
T TIGR03645 143 GNILEIYSH 151 (162)
T ss_pred CCEEEEEEc
Confidence 999999984
No 27
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.37 E-value=5.2e-12 Score=105.71 Aligned_cols=101 Identities=28% Similarity=0.457 Sum_probs=75.1
Q ss_pred eEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcC
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~ 287 (389)
+|+|+++.|.|++++++||+++|||+.......+ ..+....++..+ ...+.|..+. ...+.+..++..+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~-----~~~~~~~~~~~~--~~~i~l~~~~---~~~~~~~~~~~~~- 69 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVP-----EQGVKVVFIALG--NTKVELLEPL---GEDSPIAKFLEKN- 69 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCC-----CCCcEEEEEecC--CEEEEEEecC---CCCChHHHHHhcC-
Confidence 5899999999999999999999999986543211 124444555443 3456666543 2334455666654
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 288 GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 288 g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
+.|++||||.|+|+++++++|+++ |++++..+
T Consensus 70 ~~g~~~i~~~v~di~~~~~~l~~~----G~~~~~~~ 101 (128)
T TIGR03081 70 GGGIHHIAIEVDDIEAALETLKEK----GVRLIDEE 101 (128)
T ss_pred CCceEEEEEEcCCHHHHHHHHHHC----CCcccCCC
Confidence 568999999999999999999999 99998753
No 28
>PLN02367 lactoylglutathione lyase
Probab=99.35 E-value=1.6e-11 Score=113.83 Aligned_cols=134 Identities=12% Similarity=0.280 Sum_probs=93.1
Q ss_pred eeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcC-----------------CcceEEEeccC
Q 016432 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-----------------DEMVLLPMNEP 269 (389)
Q Consensus 207 ~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~-----------------~g~v~l~l~e~ 269 (389)
-.+.|+.+.|.|++++++||+++|||++....+.++ .+.+...+..+ .+...|+|..+
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe-----~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n 148 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPE-----MKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHN 148 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCC-----CcEEEEEeecCCccccccccccceeeccCCCCEEEEecC
Confidence 568999999999999999999999999887665432 23333334211 12346777665
Q ss_pred CCCCCCCchHHHHHhhcC-CCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHH
Q 016432 270 VFGTKRKSQIQTYLEHNE-GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCE 348 (389)
Q Consensus 270 ~~~~~~~s~i~~fl~~~~-g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~ 348 (389)
... ...+.+..|+..++ ..|++||||.|+||++++++|+++ |++++..| .. +.
T Consensus 149 ~g~-e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~----Gv~~v~~P-~~---------g~----------- 202 (233)
T PLN02367 149 WGT-ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEEL----GVEFVKKP-ND---------GK----------- 202 (233)
T ss_pred CCC-CccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHC----CCEEEeCC-cc---------CC-----------
Confidence 421 22234556765532 258999999999999999999999 99999877 31 10
Q ss_pred HcCceeecCCCceEEEEeccccC
Q 016432 349 ELGVLVDRDDQGTLLQIFTKPVG 371 (389)
Q Consensus 349 ~~~IL~D~D~~g~llqift~~~~ 371 (389)
-.++.+=+|.+|+++.|+..+..
T Consensus 203 ~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 203 MKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred ceEEEEEECCCCCEEEEEecccc
Confidence 01344448889999998876543
No 29
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.33 E-value=3.5e-11 Score=99.68 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=83.3
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEc----CCEEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS----GDLRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~----g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
++||.++|+|++++++||++.|||++......+++.. ..+.+.. +...+.+..+.....
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~~~--------------- 63 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKF--TLVFLGYPDEDSEGVLELTYNWGTEE--------------- 63 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCce--EEEEecCCCCCCccEEEEEecCCCCC---------------
Confidence 5899999999999999999999999887643222211 1233333 235566654321100
Q ss_pred CChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEe
Q 016432 109 FDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV 176 (389)
Q Consensus 109 ~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fv 176 (389)
. ...+.++.|++|.|+|+++++++++++|+++..+|... +......+++|+|..++++
T Consensus 64 ----~-----~~~~~~~~~i~~~v~did~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 64 ----P-----YDNGNGFGHLAFAVDDVYAACERLEEMGVEVTKPPGDG-GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred ----C-----cCCCCCeEEEEEEeCCHHHHHHHHHHCCCEEeeCCccC-CCceEEEEECCCCCEEEeC
Confidence 0 01244788999999999999999999999998888754 3445777888999888774
No 30
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.32 E-value=2.2e-11 Score=110.07 Aligned_cols=132 Identities=14% Similarity=0.303 Sum_probs=86.4
Q ss_pred eeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcC-----------------CcceEEEeccC
Q 016432 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-----------------DEMVLLPMNEP 269 (389)
Q Consensus 207 ~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~-----------------~g~v~l~l~e~ 269 (389)
-+++|+++.|.|+++++.||+++|||+...+...++ .+.+...+... .+...|+|.++
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~-----~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~ 100 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPE-----MKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHN 100 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCC-----CceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEc
Confidence 569999999999999999999999999877654321 23333333211 12346777654
Q ss_pred CCCCCCCchHHHHHhhc-CCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHH
Q 016432 270 VFGTKRKSQIQTYLEHN-EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCE 348 (389)
Q Consensus 270 ~~~~~~~s~i~~fl~~~-~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~ 348 (389)
... .....+..|.... .+.|+.||||.|+||++++++|+++ |++++..| .. +.
T Consensus 101 ~~~-~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~----Gv~v~~~p-~~---------~~----------- 154 (185)
T PLN03042 101 WGT-ESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKL----GVEFVKKP-DD---------GK----------- 154 (185)
T ss_pred CCC-cccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHC----CCeEEeCC-cc---------CC-----------
Confidence 311 1111233344332 2358999999999999999999999 99998766 32 10
Q ss_pred HcCceeecCCCceEEEEeccc
Q 016432 349 ELGVLVDRDDQGTLLQIFTKP 369 (389)
Q Consensus 349 ~~~IL~D~D~~g~llqift~~ 369 (389)
...+.+=.|.+|+++++....
T Consensus 155 ~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 155 MKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred ceeEEEEECCCCCEEEEEECC
Confidence 012334467788777776644
No 31
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.31 E-value=6.2e-11 Score=101.88 Aligned_cols=115 Identities=10% Similarity=0.048 Sum_probs=86.9
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~ 109 (389)
|.+++||.+.|+|++++++||++.|||++..+.+ ....++.++..+.+..+....
T Consensus 2 i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~--------~~~~~~~~g~~l~l~~~~~~~----------------- 56 (139)
T PRK04101 2 LKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR--------KTAYFDLNGLWIALNEEKDIP----------------- 56 (139)
T ss_pred CCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC--------eeEEEecCCeEEEeeccCCCC-----------------
Confidence 6789999999999999999999999999875421 133456677777765421100
Q ss_pred ChHHHHHHHHhcCCceeEEEEEEc--CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 110 DHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 110 ~~~~~~~~l~~hg~gv~~iaf~V~--Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
. ...+.|..|+||.|+ |+++++++++++|++++.+|...........+++|+|..+++..
T Consensus 57 ---~-----~~~~~~~~hiaf~v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~ 118 (139)
T PRK04101 57 ---R-----NEIHQSYTHIAFSIEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHT 118 (139)
T ss_pred ---C-----ccCCCCeeEEEEEecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEe
Confidence 0 001336889999998 99999999999999987766543344567788999999999886
No 32
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.31 E-value=9.5e-11 Score=102.03 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=86.1
Q ss_pred CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcC--C--EEEEEEccCCCCCccccccCCCCC
Q 016432 29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--D--LRFVFTAPYSPSISDAADAGNSSA 104 (389)
Q Consensus 29 ~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g--~--~~i~l~~p~~~~~~~~~~~~~~~~ 104 (389)
..++++||.|.|+|++++++||++.|||++......+.+. ...+.+..+ . ..+.+.......
T Consensus 14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~------------ 79 (150)
T TIGR00068 14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMK--FSLAFLGYGDETSAAVIELTHNWGTE------------ 79 (150)
T ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCc--eEEEEecCCCCCCccEEEEeecCCCC------------
Confidence 5688999999999999999999999999987654322221 112333322 1 233333211100
Q ss_pred CCCCCChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccC-ceEEEEEEecCCeEEEEeec
Q 016432 105 SLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN-LAVIAEVQLYGDVVLRYVSY 178 (389)
Q Consensus 105 ~~~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~-~~~~~~v~~~gg~~~~fve~ 178 (389)
. ...+.|+.|++|.|+|++++++++.++|++++.+|...+. ......+++|+|..++|+++
T Consensus 80 --------~-----~~~~~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 141 (150)
T TIGR00068 80 --------K-----YDLGNGFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQR 141 (150)
T ss_pred --------c-----ccCCCceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEC
Confidence 0 0124588999999999999999999999998887753332 34567789999999999984
No 33
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.29 E-value=2.7e-11 Score=107.21 Aligned_cols=138 Identities=19% Similarity=0.243 Sum_probs=84.9
Q ss_pred ceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEE--eccccc--c---------cccCceEEEEEcCCcceEEEeccCCCC
Q 016432 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEF--TAEDVG--T---------SESGLNSVVLANNDEMVLLPMNEPVFG 272 (389)
Q Consensus 206 ~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~--~~~d~~--~---------~~~g~~s~~~~~~~g~v~l~l~e~~~~ 272 (389)
.++||||+++|.|+++++.||+++|||+...+. ..++.. . ...+++...+..+ +...|+|.+...
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~ieL~~~~~- 79 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTG-DRIGVELFEFKN- 79 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecC-CCCcEEEEeccC-
Confidence 367999999999999999999999999874321 111100 0 0111444445443 344577766542
Q ss_pred CCCCchHHHHHhhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCc
Q 016432 273 TKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGV 352 (389)
Q Consensus 273 ~~~~s~i~~fl~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~I 352 (389)
..+....+.. .+.|++|+||.|+||++++++|+++ |+.++..+|...+ .+ .. ....
T Consensus 80 --~~~~~~~~~~--~~~g~~Hla~~v~dida~~~~l~~~----G~~~~~~~~~~~~------~~-----~~-----~~~~ 135 (162)
T TIGR03645 80 --QENPEDNFEY--WKTGVFHFCVQDPDVEGLAERIVAA----GGKKRMPVPRYYY------PG-----EK-----PYRM 135 (162)
T ss_pred --CCCCCccccc--ccccceEEEEEcCCHHHHHHHHHHc----CCcccCCCccccC------CC-----CC-----ceEE
Confidence 1111122211 3578999999999999999999999 9876543312111 00 00 0134
Q ss_pred eeecCCCceEEEEeccc
Q 016432 353 LVDRDDQGTLLQIFTKP 369 (389)
Q Consensus 353 L~D~D~~g~llqift~~ 369 (389)
++=+|.+|+++.+++++
T Consensus 136 ~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 136 IYMEDPFGNILEIYSHS 152 (162)
T ss_pred EEEECCCCCEEEEEEcC
Confidence 56677888888877765
No 34
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.27 E-value=6.3e-11 Score=98.43 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=80.4
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEec-CCCCceeEEEEEEEc-CCEEEEEEccCCCCCccccccCCCCCCCCCC
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSD-LSTGNTVHASYLLRS-GDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~-~~~g~r~~~~~~~~~-g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~ 109 (389)
+++||.|+|+|++++++||++.|||++..... ...+. ..+.+.. ++..+.|.+......
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~---------------- 61 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGF---ESYFLSFDDGARLELMTRPDIAP---------------- 61 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCc---eEEEEecCCCcEEEEEcCcccCC----------------
Confidence 47999999999999999999999999764422 12221 1223332 456677765311110
Q ss_pred ChHHHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEE
Q 016432 110 DHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRY 175 (389)
Q Consensus 110 ~~~~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~f 175 (389)
.. ......|..||||.|+ |+++++++++++|+++..+|...........+++|+|..++|
T Consensus 62 --~~----~~~~~~g~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~ 124 (125)
T cd07241 62 --SP----NEGERTGWAHLAFSVGSKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEI 124 (125)
T ss_pred --Cc----ccCCCCceEEEEEECCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEe
Confidence 00 0112348899999995 589999999999999887775433333345578899988766
No 35
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.27 E-value=1.4e-10 Score=96.01 Aligned_cols=117 Identities=21% Similarity=0.158 Sum_probs=87.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHHHH
Q 016432 36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR 115 (389)
Q Consensus 36 I~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (389)
+.|+|+|++++++||++.|||++......+++.. ....+..++..+.+..+.... .
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~--~~~~l~~~~~~~~l~~~~~~~--------------------~-- 60 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRV--MHAELRIGDSVLMLADEFPEH--------------------G-- 60 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCE--EEEEEEECCEEEEEecCCccc--------------------C--
Confidence 5689999999999999999999987765344432 233455677777777542111 0
Q ss_pred HHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 116 SFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 116 ~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
....++.+..+++|.|+|++++++++.+.|++++.+|.....+.+...+++|+|..+.|.+
T Consensus 61 -~~~~~~~~~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 61 -SPASWGGTPVSLHLYVEDVDATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred -CCCCCCCceEEEEEEeCCHHHHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 0112345677999999999999999999999999888765566778889999999988865
No 36
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.27 E-value=2.7e-11 Score=100.48 Aligned_cols=127 Identities=18% Similarity=0.175 Sum_probs=83.9
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
+|+||.++|+|++++++||++.|||+++................++.++..+.+.....+.....
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------- 65 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRAS--------------- 65 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSE---------------
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeecccccccc---------------
Confidence 68999999999999999999999999998765211223455667777664444433322221000
Q ss_pred HHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEE-EEEEecCCeEEEE
Q 016432 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVI-AEVQLYGDVVLRY 175 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~-~~v~~~gg~~~~f 175 (389)
. ..+...+..++.++++.++|++++++++++.|+++..+|......... ..+++|+|..++|
T Consensus 66 -~-~~~~~~~~~~i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 66 -G-HSFPEHGGHHIAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp -E-EHHHSHTSEEEEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred -c-cccccccceeEEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 0 000101233566666666789999999999999998887654443333 4588899988765
No 37
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.26 E-value=8.9e-11 Score=97.93 Aligned_cols=101 Identities=26% Similarity=0.474 Sum_probs=75.8
Q ss_pred EeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCC
Q 016432 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (389)
Q Consensus 209 iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g 288 (389)
|+||++.|.|++++.+||+++|||+.......+ ...+.....+.. +...+.|..+. ...+....+... .+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~----~~~~~~~~~~~~--~~~~l~l~~~~---~~~~~~~~~~~~-~~ 70 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVP----PEQGVRVAFLGL--GNVQIELIEPL---DDDSPIAKFLEK-RG 70 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccC----cccccEEEEEEc--CCEEEEEEEEC---CCCCcHHHHHhc-CC
Confidence 589999999999999999999999997654321 012234455554 45667776654 223344444443 57
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 289 ~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.|+.|+||.|+|+.+++++|+++ |++++.+|
T Consensus 71 ~g~~h~~f~v~d~~~~~~~l~~~----G~~~~~~~ 101 (128)
T cd07249 71 EGLHHIAFEVDDIDAALARLKAQ----GVRLLQEG 101 (128)
T ss_pred CceEEEEEEeCCHHHHHHHHHHC----CCeeeccC
Confidence 89999999999999999999999 99999877
No 38
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.26 E-value=1.7e-10 Score=98.15 Aligned_cols=118 Identities=13% Similarity=0.078 Sum_probs=82.4
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~ 109 (389)
+.+++||.+.|+|++++++||++.|||++..+.+.. +........+..|+..+.+.....+
T Consensus 2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~i~l~~~~~~------------------ 62 (131)
T cd08364 2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDK-TFSLSKEKFFLIGGLWIAIMEGDSL------------------ 62 (131)
T ss_pred cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccc-cccccceeEEEcCCeEEEEecCCCC------------------
Confidence 678999999999999999999999999887653211 1000111223356667776542111
Q ss_pred ChHHHHHHHHhcCCceeEEEEEEc--CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 110 DHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 110 ~~~~~~~~l~~hg~gv~~iaf~V~--Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
...++.|+||.|+ |+++.+++|+++|+++..++....+..+...+++|+|..++|..
T Consensus 63 -----------~~~~~~Hiaf~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~ 121 (131)
T cd08364 63 -----------QERTYNHIAFKISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHT 121 (131)
T ss_pred -----------CCCCceEEEEEcCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEec
Confidence 1126889999998 79999999999999865332222223457788899999988875
No 39
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.25 E-value=2.2e-10 Score=95.49 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=84.6
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChH
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (389)
+.|+.|+|+|++++.+||.+.|||++....+ ++ ....+..++..+.+........ ..+. .
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---~ 60 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SG----DYGELETGETTLAFASHDLAES-----------NLKG---G 60 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CC----cEEEecCCcEEEEEEccccccc-----------cccc---C
Confidence 4799999999999999999999999875432 11 1233456776666654321100 0000 0
Q ss_pred HHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 113 ~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
........++ +..+++|+|+|+++++++++++|++++.+|...+.+.+...+++|+|..+.+++
T Consensus 61 ~~~~~~~~~~-~~~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~ 124 (125)
T cd07264 61 FVKADPAQPP-AGFEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCS 124 (125)
T ss_pred ccCCccccCC-CcEEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEec
Confidence 0000111233 345899999999999999999999998888766556667888999999888865
No 40
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.24 E-value=1.4e-11 Score=102.19 Aligned_cols=128 Identities=24% Similarity=0.360 Sum_probs=86.9
Q ss_pred eEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcC
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~ 287 (389)
+|+|++++|.|++++++||+++|||++.+...... .........+......+.+..+..... ..... .+... .
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~-~~~~~-~ 73 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDG---EGGDLRIAFLRIGEGHIELFLNPSPPP--RASGH-SFPEH-G 73 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEES---TTEEEEEEEEESTSSCEEEEEEESSSS--SSEEE-HHHSH-T
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeecccc---ccccccceeecccccceeeeeeccccc--ccccc-ccccc-c
Confidence 68999999999999999999999999988765211 112245566677777888887766532 22111 11111 2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEEEE
Q 016432 288 GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365 (389)
Q Consensus 288 g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~llqi 365 (389)
..++.|+++.++|+.+++++|++. |+++..+| ..+|. + .....|-+|++|+++++
T Consensus 74 ~~~i~~~~~~~~dl~~~~~~l~~~----g~~~~~~~-~~~~~------~------------~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 74 GHHIAFLAFDVDDLDAAYERLKAQ----GVEIVEEP-DRYYF------G------------SGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHT----TGEEEEEE-EEHST------T------------CEEEEEEEETTSEEEEE
T ss_pred ceeEEEEeccHHHHHHHHHHHhhc----CccEEecC-CCCCC------C------------CEEEEEEECCCCCEEEC
Confidence 334555555666889999999999 99999988 55541 1 00112578888988875
No 41
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.24 E-value=2.6e-10 Score=95.06 Aligned_cols=119 Identities=18% Similarity=0.101 Sum_probs=85.1
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHHHH
Q 016432 36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR 115 (389)
Q Consensus 36 I~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (389)
-.|.|+|++++++||++.|||++......+.+. .....++.++..+++........ . .
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~--~~~~~l~~~~~~~~l~~~~~~~~-------------------~-~ 60 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGG--VAHAELRFGDGGVMVGSVRDDYR-------------------A-S 60 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCc--EEEEEEEECCEEEEEecCCCccc-------------------c-c
Confidence 368899999999999999999998765333332 22334455677777764321110 0 0
Q ss_pred HHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 116 SFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 116 ~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
. ....+.+..+++|.|+|+++++++++++|++++.+|...+.+.....+++|+|..+.|.+
T Consensus 61 ~-~~~~~~~~~~~~~~v~d~d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 61 S-ARAGGAGTQGVYVVVDDVDAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGT 121 (122)
T ss_pred c-cccCCCceEEEEEEECCHHHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEec
Confidence 0 012334667899999999999999999999999888776556677889999999887753
No 42
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.23 E-value=1.9e-10 Score=96.50 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=86.2
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhc---CCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 32 RFHHVEFWCTDATNTARRFSWGL---GMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~l---GF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
+|+||.+.|+|++++++||++.| ||++....+ .+. .+....++..|.|.++.....
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~~----~~~~~~~~~~i~l~~~~~~~~--------------- 59 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DGR----SWRAGDGGTYLVLQQADGESA--------------- 59 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cCc----eEEecCCceEEEEEecccCCC---------------
Confidence 58999999999999999999999 999887642 111 111115778888887543221
Q ss_pred CChHHHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeec---cCceEEEEEEecCCeEEEEee
Q 016432 109 FDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVIL---DNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 109 ~~~~~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~---~~~~~~~~v~~~gg~~~~fve 177 (389)
. ....++.|+.|+||.|+ |+++++++++++|+++...|... ........+++|+|..++|+-
T Consensus 60 ----~---~~~~~~~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 60 ----G---RHDRRNPGLHHLAFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred ----c---ccccCCcCeeEEEEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 0 11234568999999997 58999999999999988776542 234556777889999888764
No 43
>PRK11478 putative lyase; Provisional
Probab=99.23 E-value=1e-10 Score=98.30 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=66.4
Q ss_pred cceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHh
Q 016432 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE 284 (389)
Q Consensus 205 ~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~ 284 (389)
.+.+|+|+++.|+|++++++||+++|||++......++ ...... .+.. ++...++|.+.... .... .
T Consensus 3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~----~~~~~~-~~~~-~~~~~l~l~~~~~~-~~~~------~ 69 (129)
T PRK11478 3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREA----RDSWKG-DLAL-NGQYVIELFSFPFP-PERP------S 69 (129)
T ss_pred CcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccc----ccccee-eEec-CCCcEEEEEEecCC-CCCC------C
Confidence 47889999999999999999999999999864321110 000111 1112 23444555432110 0000 0
Q ss_pred hcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 285 ~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.....|++||||.|+|+++++++|+++ |+++.+.+
T Consensus 70 ~~~~~g~~hi~f~v~d~~~~~~~l~~~----G~~~~~~~ 104 (129)
T PRK11478 70 RPEACGLRHLAFSVDDIDAAVAHLESH----NVKCEAIR 104 (129)
T ss_pred CCCCCceeEEEEEeCCHHHHHHHHHHc----CCeeeccc
Confidence 112457999999999999999999999 99987543
No 44
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.23 E-value=1.4e-10 Score=95.97 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=85.9
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~ 109 (389)
|.+|+||.+.|+|++++++||.+.|||+.....+.. ....++.++..+.+.....+..
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~---------------- 58 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV------GRKALRFGSQKINLHPVGGEFE---------------- 58 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC------CceEEEeCCEEEEEecCCCccC----------------
Confidence 468999999999999999999999999988654311 1233455666777765322110
Q ss_pred ChHHHHHHHHhcCCceeEEEEEEcC-HHHHHHHHHHCCCcccCCCeeccC---ceEEEEEEecCCeEEEEee
Q 016432 110 DHAACRSFAASHGLAARSIAVEVED-ADVAFNTSVAHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 110 ~~~~~~~~l~~hg~gv~~iaf~V~D-vda~~~~a~a~Ga~~i~~P~~~~~---~~~~~~v~~~gg~~~~fve 177 (389)
+ .....+.|..|+||.|++ +++++++++++|++++.+|....+ ......+++|+|..+++++
T Consensus 59 ---~---~~~~~~~~~~hi~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 59 ---P---AAGSPGPGSDDLCLITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred ---c---CccCCCCCCceEEEEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 0 001134588999999985 999999999999998877654322 2356678899999888765
No 45
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.22 E-value=1.7e-10 Score=94.59 Aligned_cols=116 Identities=14% Similarity=0.219 Sum_probs=83.5
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEc--C-CEEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--G-DLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 35 HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~--g-~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
||.+.|.|++++++||++.|||++..+.....+. ....+.. + ++.|.+..+..+.+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~------------------ 59 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGF---RWVTVAPPGSPETSLVLAPPANPAA------------------ 59 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCc---EEEEEeCCCCCeeEEEEeCCCCccc------------------
Confidence 8999999999999999999999998775422222 2333432 2 56777765432210
Q ss_pred HHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
. ...++.+..+++|.|+|+++++++++++|+++..+|... .......+++|+|..+.|++
T Consensus 60 -~----~~~~~~~~~~~~~~v~di~~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 60 -M----SGLQPGGTPGLVLATDDIDATYEELKARGVEFSEEPREM-PYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred -c----ccccCCCceEEEEEehHHHHHHHHHHhCCCEEeeccccC-CCceEEEEECCCCCEEEEeC
Confidence 0 112345788999999999999999999999998888433 23456778889998887763
No 46
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.22 E-value=3.7e-10 Score=92.79 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=81.3
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC-EEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~-~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
+.||.|.|+|++++++||++.|||+...... +. . ...++..++ ..+.+.....+.
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~------------------- 56 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GG-G---DYAVFSTGGGAVGGLMKAPEPA------------------- 56 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CC-C---ceEEEEeCCccEEEEecCCCCC-------------------
Confidence 4799999999999999999999999875542 11 1 234555554 333332211000
Q ss_pred HHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
..+.+..+++|.|+|+++++++|+++|++++.+|...++......+++|+|..+.|++
T Consensus 57 --------~~~~~~~~~~f~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 57 --------AGSPPGWLVYFAVDDVDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred --------CCCCCeEEEEEEeCCHHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 0123566899999999999999999999998888765545567888899999888763
No 47
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.22 E-value=4.1e-10 Score=97.55 Aligned_cols=116 Identities=13% Similarity=0.022 Sum_probs=79.0
Q ss_pred CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC-EE-EEEEccCCCCCccccccCCCCCCC
Q 016432 29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LR-FVFTAPYSPSISDAADAGNSSASL 106 (389)
Q Consensus 29 ~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~-~~-i~l~~p~~~~~~~~~~~~~~~~~~ 106 (389)
.+.+|+||.+.|+|++++++||++.|||++..+...+++.....+ .++.++ .. +.+..
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~-~l~~~~~~h~~~~~~------------------- 62 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGS-FLSCSNKPHDIAFVG------------------- 62 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEE-EEecCCCcceEEEec-------------------
Confidence 467899999999999999999999999998765422223221112 222222 11 11111
Q ss_pred CCCChHHHHHHHHhcCCceeEEEEEEcCHHH---HHHHHHHCCCcccCCCeecc-CceEEEEEEecCCeEEEEee
Q 016432 107 PTFDHAACRSFAASHGLAARSIAVEVEDADV---AFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 107 ~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda---~~~~a~a~Ga~~i~~P~~~~-~~~~~~~v~~~gg~~~~fve 177 (389)
..+.++.|+||+|+|+++ +.+++.++|+++...|.... +......+++|+|..++|..
T Consensus 63 -------------~~~~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 63 -------------GPDGKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred -------------CCCCCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 012378899999999877 67899999998765654211 23456778899999999976
No 48
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.22 E-value=2.3e-10 Score=94.73 Aligned_cols=115 Identities=18% Similarity=0.126 Sum_probs=81.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC-EEEEEEccCCCCCccccccCCCCCCCCCCChHH
Q 016432 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLPTFDHAA 113 (389)
Q Consensus 35 HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~-~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (389)
++.++|+|++++++||++.|||+.....+ + .+.+...++ +.|.+..+..+.. +
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~-~~~~~~~~~~~~l~l~~~~~~~~-------------------~ 57 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------W-YVSLRSPDGGVELAFMLPGHETV-------------------P 57 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------c-EEEEecCCCceEEEEccCCCCCC-------------------c
Confidence 57899999999999999999999886421 1 123333333 6666654321110 0
Q ss_pred HHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 114 CRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 114 ~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
.......+.++ +++|.|+|+++++++++++|++++.+|...+.+.+...+++|+|..++|++
T Consensus 58 -~~~~~~~~~~~-~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 58 -AAQYQFQGQGL-ILNFEVDDVDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred -chhcccCCceE-EEEEEECCHHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 00112234455 799999999999999999999988888765555667788999999998875
No 49
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.20 E-value=8.4e-11 Score=103.00 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=79.7
Q ss_pred eEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcC
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~ 287 (389)
+|+||++.|+|++++++||+++|||+.......+. ..+....++...++... .....+. +....
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~----~~~~~~~~l~~~~~~~~----------~~~~~~~--l~~~~ 64 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPG----PGNPVAAFLRLDRGEEY----------VDHHTLA--LAQGP 64 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCC----CCCcEEEEEecCCCCCc----------ccchHHH--HhcCC
Confidence 58999999999999999999999999865433210 01233344443322110 0111222 12223
Q ss_pred CCCcceEEEEeCCHHHHH---HHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEEE
Q 016432 288 GAGVQHLALVSEDIFRTL---REMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ 364 (389)
Q Consensus 288 g~GvqHiAf~vdDI~~a~---~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~llq 364 (389)
+.|++||||.|+|++++. ++|+++ |++++..| ..-. .+ ..-.+|=+|.+|+++.
T Consensus 65 ~~g~~Hiaf~v~die~~~~~~~~L~~~----Gv~v~~~~-g~~~------~g------------~~~~~y~~DPdG~~iE 121 (153)
T cd07257 65 ESGVHHAAFEVHDFDAQGLGHDYLREK----GYEHVWGV-GRHI------LG------------SQIFDYWFDPWGFIVE 121 (153)
T ss_pred CCceeEEEEEcCCHHHHHHHHHHHHHC----CCcEeecC-CccC------CC------------CCEEEEEECCCCCEEE
Confidence 578999999999999886 999999 99988765 2100 01 0012466788899999
Q ss_pred Eeccc
Q 016432 365 IFTKP 369 (389)
Q Consensus 365 ift~~ 369 (389)
+|...
T Consensus 122 l~~~~ 126 (153)
T cd07257 122 HYTDG 126 (153)
T ss_pred EEcCc
Confidence 99765
No 50
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.18 E-value=2.4e-10 Score=94.60 Aligned_cols=97 Identities=18% Similarity=0.296 Sum_probs=70.4
Q ss_pred EeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCC--cceEEEeccCCCCCCCCchHHHHHhhc
Q 016432 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (389)
Q Consensus 209 iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~--g~v~l~l~e~~~~~~~~s~i~~fl~~~ 286 (389)
|+|+++.|+|++++++||+++|||++.+....++ .+.....+..++ +...+.+..+.. .... ..
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~l~~~~~---~~~~------~~ 66 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPE-----GKFTLVFLGYPDEDSEGVLELTYNWG---TEEP------YD 66 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCC-----CceEEEEecCCCCCCccEEEEEecCC---CCCC------cC
Confidence 6899999999999999999999999887654221 123334455444 455566544321 1000 11
Q ss_pred CCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 287 EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 287 ~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.+.+++|++|.|+||++++++|+++ |++++..|
T Consensus 67 ~~~~~~~i~~~v~did~~~~~l~~~----G~~~~~~~ 99 (121)
T cd07233 67 NGNGFGHLAFAVDDVYAACERLEEM----GVEVTKPP 99 (121)
T ss_pred CCCCeEEEEEEeCCHHHHHHHHHHC----CCEEeeCC
Confidence 3457999999999999999999999 99999987
No 51
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.17 E-value=9.9e-10 Score=97.60 Aligned_cols=120 Identities=15% Similarity=0.119 Sum_probs=81.9
Q ss_pred CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcC--CEEEEEEccCCCCCccccccCCCCCC
Q 016432 28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--DLRFVFTAPYSPSISDAADAGNSSAS 105 (389)
Q Consensus 28 ~~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g--~~~i~l~~p~~~~~~~~~~~~~~~~~ 105 (389)
+.|.+|+||.|+|+|++++++||++.|||++......+.+.. ....+..+ ...+.+... +.
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~l~~~--~~------------- 64 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKE--AGAWMSVSNKVHDVAYTRD--PA------------- 64 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCce--EEEEEeCCCCceeEEEecC--CC-------------
Confidence 468999999999999999999999999999876543222221 11223332 233443321 00
Q ss_pred CCCCChHHHHHHHHhcCCceeEEEEEEcC---HHHHHHHHHHCCCcccCCCeeccC-ceEEEEEEecCCeEEEEeec
Q 016432 106 LPTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDN-LAVIAEVQLYGDVVLRYVSY 178 (389)
Q Consensus 106 ~~~~~~~~~~~~l~~hg~gv~~iaf~V~D---vda~~~~a~a~Ga~~i~~P~~~~~-~~~~~~v~~~gg~~~~fve~ 178 (389)
....++.||||+|+| +++++++++++|++++..|..... ...+..+++|+|..++|+..
T Consensus 65 --------------~~~~~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 65 --------------GARGRLHHLAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred --------------CCCCCceEEEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 012268899999985 558889999999998777654221 22346788999999999873
No 52
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.17 E-value=4.4e-10 Score=98.41 Aligned_cols=119 Identities=14% Similarity=0.012 Sum_probs=78.5
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCC-CCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCC
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLS-TGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD 110 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~-~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~ 110 (389)
+|+||.|+|+|++++++||++.|||++......+ .+. ....+++.++.. ... ..
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~--~~~~~l~~~~~~----~~~-~~------------------ 55 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGN--PVAAFLRLDRGE----EYV-DH------------------ 55 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCC--cEEEEEecCCCC----Ccc-cc------------------
Confidence 4899999999999999999999999987543221 111 112333322100 000 00
Q ss_pred hHHHHHHHHhcCCceeEEEEEEcCHHHHH---HHHHHCCCcccCCCeecc-CceEEEEEEecCCeEEEEee
Q 016432 111 HAACRSFAASHGLAARSIAVEVEDADVAF---NTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 111 ~~~~~~~l~~hg~gv~~iaf~V~Dvda~~---~~a~a~Ga~~i~~P~~~~-~~~~~~~v~~~gg~~~~fve 177 (389)
.... .....+.|+.||||+|+|++++. ++|+++|+++...|.... +...+..+++|+|..++|..
T Consensus 56 -~~~~-l~~~~~~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~ 124 (153)
T cd07257 56 -HTLA-LAQGPESGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYT 124 (153)
T ss_pred -hHHH-HhcCCCCceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEc
Confidence 0111 11223468999999999999987 999999999876654321 23346788999999998875
No 53
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.17 E-value=9.9e-10 Score=96.80 Aligned_cols=114 Identities=16% Similarity=0.031 Sum_probs=82.0
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcC---CEEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG---DLRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g---~~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
+++||.|+|+|++++.+||++.|||++..+.. + ...++..| +..|.|..+.....
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~----~~~~~~~~~~~~~~l~l~~~~~~~~--------------- 58 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D----RVRLEEGGGGPGAVVDVLEEPDQPR--------------- 58 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C----EEEEEecCCCCCCEEEEEeCCCCCC---------------
Confidence 58999999999999999999999999886542 1 12333333 56777766421110
Q ss_pred CChHHHHHHHHhcCCceeEEEEEEcC---HHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEeec
Q 016432 109 FDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY 178 (389)
Q Consensus 109 ~~~~~~~~~l~~hg~gv~~iaf~V~D---vda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve~ 178 (389)
. .....++.||||.|+| +++++++++++|+++ .+|... +......+++|+|..++|+..
T Consensus 59 ----~-----~~~~~~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~-~~~~~~-~~~~s~yf~DPdG~~iEl~~~ 120 (157)
T cd08347 59 ----G-----RPGAGTVHHVAFRVPDDEELEAWKERLEALGLPV-SGIVDR-FYFKSLYFREPGGILFEIATD 120 (157)
T ss_pred ----C-----cccCCceEEEEEECCCHHHHHHHHHHHHHCCCCc-cccccc-ccEEEEEEECCCCcEEEEEEC
Confidence 0 0012378999999998 999999999999974 444432 234567789999999999873
No 54
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.17 E-value=5.4e-10 Score=93.05 Aligned_cols=117 Identities=12% Similarity=0.053 Sum_probs=79.4
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD 110 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~ 110 (389)
+++.|+.++|+|++++++||++.|||++....+ . ...+ .++..|.+..........
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~----~~~~-~~~~~l~~~~~~~~~~~~--------------- 56 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----E----NVTF-EGGFALQEGYSWLEGISK--------------- 56 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----c----eEEE-eccceeccchhhhccCCc---------------
Confidence 468999999999999999999999999864322 1 1122 233333221100000000
Q ss_pred hHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCC-cccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 111 HAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGA-KPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 111 ~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga-~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
... ..+.+-.+++|.|+|+++++++++++|+ +++.+|...+.+.+...+++|+|+.+++.+
T Consensus 57 -~~~-----~~~~~~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~ 118 (120)
T cd09011 57 -ADI-----IEKSNNFELYFEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGE 118 (120)
T ss_pred -ccc-----cccCCceEEEEEehhhHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEec
Confidence 000 0123456899999999999999999986 677888776556678889999999998865
No 55
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.16 E-value=7.5e-10 Score=95.91 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=76.9
Q ss_pred ccceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCc-eEEEEEcCCcceEEEeccCCCCCCCCchHHHH
Q 016432 204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGL-NSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY 282 (389)
Q Consensus 204 ~~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~-~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~f 282 (389)
+.+.+|+|+++.|.|++++++||+++|||++......++ .+. ...++.+.+....+.+...
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~-----~~~~~~~~l~~~~~~h~~~~~~~------------- 63 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPD-----GGTRVGSFLSCSNKPHDIAFVGG------------- 63 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCC-----CCeEEEEEEecCCCcceEEEecC-------------
Confidence 457899999999999999999999999999765432110 111 1223333222222222111
Q ss_pred HhhcCCCCcceEEEEeCCHHH---HHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCC
Q 016432 283 LEHNEGAGVQHLALVSEDIFR---TLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ 359 (389)
Q Consensus 283 l~~~~g~GvqHiAf~vdDI~~---a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~ 359 (389)
.+.|++|+||.|+|+.+ +.++|+++ |+++...| .. -+ + ....-+|=.|.+
T Consensus 64 ----~~~~~~Hiaf~v~d~~~l~~~~~~l~~~----Gv~i~~~p-~~--------~~-------~---~~~~~~yf~DPd 116 (143)
T cd07243 64 ----PDGKLHHFSFFLESWEDVLKAGDIISMN----DVSIDIGP-TR--------HG-------I---TRGQTIYFFDPS 116 (143)
T ss_pred ----CCCCceEEEEEcCCHHHHHHHHHHHHHc----CCceEECC-cC--------CC-------C---CCceEEEEECCC
Confidence 23579999999999877 67899999 99877666 11 11 0 001123556888
Q ss_pred ceEEEEecc
Q 016432 360 GTLLQIFTK 368 (389)
Q Consensus 360 g~llqift~ 368 (389)
|..+.+|+.
T Consensus 117 G~~iEl~~~ 125 (143)
T cd07243 117 GNRNETFAG 125 (143)
T ss_pred CCEEEEecC
Confidence 888888764
No 56
>PRK10291 glyoxalase I; Provisional
Probab=99.15 E-value=1.5e-09 Score=91.80 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=78.5
Q ss_pred EEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC----EEEEEEccCCCCCccccccCCCCCCCCCCChHH
Q 016432 38 FWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADAGNSSASLPTFDHAA 113 (389)
Q Consensus 38 ~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~----~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (389)
|.|+|++++++||++.|||+++.....+... .....+..++ ..+.+.... +.
T Consensus 2 l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-~~--------------------- 57 (129)
T PRK10291 2 LRVGDLQRSIDFYTNVLGMKLLRTSENPEYK--YSLAFVGYGPETEEAVIELTYNW-GV--------------------- 57 (129)
T ss_pred EEecCHHHHHHHHHhccCCEEEEeecCCCCc--EEEEEEccCCCCCcceEEeeecC-CC---------------------
Confidence 7899999999999999999987654322221 2233343332 223433211 00
Q ss_pred HHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccC-ceEEEEEEecCCeEEEEeec
Q 016432 114 CRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN-LAVIAEVQLYGDVVLRYVSY 178 (389)
Q Consensus 114 ~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~-~~~~~~v~~~gg~~~~fve~ 178 (389)
..+ ..+.+..|+||+|+|+++++++++++|+++..+|....+ ...++.+++|+|..++|++.
T Consensus 58 -~~~--~~g~~~~hlaf~V~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~ 120 (129)
T PRK10291 58 -DKY--ELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEE 120 (129)
T ss_pred -CCC--cCCCCeeEEEEEeCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEc
Confidence 000 135578999999999999999999999998876644333 34567889999999999984
No 57
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.15 E-value=6.8e-10 Score=92.15 Aligned_cols=119 Identities=16% Similarity=0.027 Sum_probs=79.5
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEE-c---CCEEEEEEccCCCCCccccccCCCCCCCC
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR-S---GDLRFVFTAPYSPSISDAADAGNSSASLP 107 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~-~---g~~~i~l~~p~~~~~~~~~~~~~~~~~~~ 107 (389)
+|+||.|.|+|++++++||++.|||++........+.... ...+. . ++..+.|.+......
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~l~~~~~~~~-------------- 65 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTY-HLFFGDGLGSPGTLLTFFEWPDAGP-------------- 65 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceE-EEEEecCCCCCCCEEEEEecCCCCC--------------
Confidence 5799999999999999999999999988765422221111 12222 2 445666654321110
Q ss_pred CCChHHHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEe
Q 016432 108 TFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV 176 (389)
Q Consensus 108 ~~~~~~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fv 176 (389)
. ......++.|+||.|+ |+++++++++++|+++..++.. .......+++|+|..++|+
T Consensus 66 -----~----~~~~~~~~~hi~f~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 66 -----K----GRRGPGQIHHIAFSVPSEASLDAWRERLRAAGVPVSGVVDH--FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred -----C----CCCCCCcEEEEEEEcCCHHHHHHHHHHHHHcCCcccceEee--cceEEEEEECCCCCEEEeC
Confidence 0 0012236889999998 5799999999999988654432 3445667788888887764
No 58
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.15 E-value=5.7e-10 Score=95.00 Aligned_cols=112 Identities=8% Similarity=-0.003 Sum_probs=80.1
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChH
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (389)
|+||.|+|+|++++++||++.|||++..... . ...+..++..+.+.......
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~-----~---~~~~~~~~~~l~l~~~~~~~-------------------- 52 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE-----K---TAYFTIGGTWLALNEEPDIP-------------------- 52 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC-----c---cceEeeCceEEEEEccCCCC--------------------
Confidence 6899999999999999999999999875321 1 12345577777776531100
Q ss_pred HHHHHHHhcCCceeEEEEEEc--CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 113 ACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 113 ~~~~~l~~hg~gv~~iaf~V~--Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
. .....|+.||||.|+ |++++++++.++|+++..+|.......+...+++|+|..+++..
T Consensus 53 -~----~~~~~~~~hiaf~v~~~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~ 114 (131)
T cd08363 53 -R----NEIRQSYTHIAFTIEDSEFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHT 114 (131)
T ss_pred -c----CCcCccceEEEEEecHHHHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEec
Confidence 0 011237889999998 49999999999999986555432223455677888888888876
No 59
>PRK06724 hypothetical protein; Provisional
Probab=99.15 E-value=8.9e-10 Score=93.78 Aligned_cols=109 Identities=13% Similarity=0.178 Sum_probs=78.2
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhc---CCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGL---GMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASL 106 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~l---GF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~ 106 (389)
+.+++||.|.|+|++++++||.+.| ||+.... ..+..|+..+.|..+...
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~------------~~~~~g~~~l~l~~~~~~--------------- 57 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE------------VAYSTGESEIYFKEVDEE--------------- 57 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee------------EeeeCCCeeEEEecCCcc---------------
Confidence 5679999999999999999999965 6665421 112345555555432100
Q ss_pred CCCChHHHHHHHHhcCCceeEEEEEE---cCHHHHHHHHHHCCCcccCCCeecc---CceEEEEEEecCCeEEEEee
Q 016432 107 PTFDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVILD---NLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 107 ~~~~~~~~~~~l~~hg~gv~~iaf~V---~Dvda~~~~a~a~Ga~~i~~P~~~~---~~~~~~~v~~~gg~~~~fve 177 (389)
+ ....|..|+||.| +|+|+.++++.++|++++.+|.... .+.....+++|+|..++++.
T Consensus 58 -----------~-~~~~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~ 122 (128)
T PRK06724 58 -----------I-VRTLGPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAY 122 (128)
T ss_pred -----------c-cCCCCceeEEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEe
Confidence 0 0133788999998 7899999999999999887775432 23456678899999998876
No 60
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.13 E-value=9.8e-10 Score=97.63 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=82.6
Q ss_pred ccceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHH
Q 016432 204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 283 (389)
Q Consensus 204 ~~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl 283 (389)
+.+++|+|+++.|+|++++.+||+++|||++......+. ......++.......++.+.....
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~l~~~~~------------ 64 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDN-----GKEAGAWMSVSNKVHDVAYTRDPA------------ 64 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCC-----CceEEEEEeCCCCceeEEEecCCC------------
Confidence 468999999999999999999999999999865432211 111223344333344444422210
Q ss_pred hhcCCCCcceEEEEeCCH---HHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCc
Q 016432 284 EHNEGAGVQHLALVSEDI---FRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG 360 (389)
Q Consensus 284 ~~~~g~GvqHiAf~vdDI---~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g 360 (389)
....+++||||.|+|+ ++.+++|+++ |++++..| ... +. ...-.+|=.|.+|
T Consensus 65 --~~~~~~~hiaf~v~~~~~l~~~~~~l~~~----Gv~i~~~p-~~~--------~~----------~~~~~~y~~DPdG 119 (166)
T cd09014 65 --GARGRLHHLAYALDTREDVLRAADIFLEN----GIFIEAGP-GKH--------GI----------QQTFFLYVYEPGG 119 (166)
T ss_pred --CCCCCceEEEEECCCHHHHHHHHHHHHHc----CCccccCC-ccc--------CC----------CCceEEEEECCCC
Confidence 0124699999999865 5788999999 99987666 321 10 0111356678999
Q ss_pred eEEEEeccc
Q 016432 361 TLLQIFTKP 369 (389)
Q Consensus 361 ~llqift~~ 369 (389)
+++++++.+
T Consensus 120 ~~iEl~~~~ 128 (166)
T cd09014 120 NRVELFGGG 128 (166)
T ss_pred CEEEEEEcC
Confidence 999999983
No 61
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.12 E-value=1.8e-09 Score=90.45 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=80.2
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~ 109 (389)
.++++||.|.|+|++++++||++.|||++....+ . . ..+.-.++..+.+..+ +
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~-~~~~~~~~~~l~~~~~--~------------------ 54 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG----P--F-AVVKLDNGVSLDFAQP--D------------------ 54 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----C--E-EEEEcCCCcEEEEecC--C------------------
Confidence 3679999999999999999999999999876321 1 1 1111123455555432 0
Q ss_pred ChHHHHHHHHhcCCceeEEEEEEc--CHHHHHHHHHHCCCcccCCCeec-------cCceEEEEEEecCCeEEEEeec
Q 016432 110 DHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPVIL-------DNLAVIAEVQLYGDVVLRYVSY 178 (389)
Q Consensus 110 ~~~~~~~~l~~hg~gv~~iaf~V~--Dvda~~~~a~a~Ga~~i~~P~~~-------~~~~~~~~v~~~gg~~~~fve~ 178 (389)
...+..|+||.|+ |+++++++++++|+++..+|... ....+...+++|+|..++|+.+
T Consensus 55 -----------~~~~~~h~a~~v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 55 -----------GEIPPQHYAFLVSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred -----------CCCCcceEEEEeCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 0114568999887 69999999999999987776542 2345678888999999999874
No 62
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.12 E-value=1.5e-09 Score=90.53 Aligned_cols=109 Identities=16% Similarity=0.093 Sum_probs=77.2
Q ss_pred CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEc-CC---EEEEEEccCCCCCccccccCCCC
Q 016432 28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GD---LRFVFTAPYSPSISDAADAGNSS 103 (389)
Q Consensus 28 ~~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~-g~---~~i~l~~p~~~~~~~~~~~~~~~ 103 (389)
+.+.+|+||.|.|+|++++.+||++.|||++..+.+ + ...++. ++ ..+.+...
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~---~-----~~~l~~~~~~~~~~~~l~~~--------------- 58 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG---Q-----SVYLRAWGDYEHHSLKLTES--------------- 58 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC---C-----eEEEEeccCCCccEEEEeeC---------------
Confidence 568999999999999999999999999999876532 1 122332 21 23333321
Q ss_pred CCCCCCChHHHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 104 ASLPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 104 ~~~~~~~~~~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
-..|+.|+||.|+ |+++++++++++|+++...+... +......+++|+|..+++.-
T Consensus 59 -----------------~~~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 59 -----------------PEAGLGHIAWRASSPEALERRVAALEASGLGIGWIEGDP-GHGKAYRFRSPDGHPMELYW 117 (121)
T ss_pred -----------------CCCceEEEEEEcCCHHHHHHHHHHHHHcCCccccccCCC-CCcceEEEECCCCCEEEEEE
Confidence 1237899999997 68999999999999864333221 22335578899999888764
No 63
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.12 E-value=2.6e-09 Score=90.56 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=79.3
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC--EEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 34 ~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~--~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
+||.|.|+|++++++||++.|||++....+.+ +. ...+.++.++ ..+.+...
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~----------------------- 54 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GV--DAAAFLRCDEDHHDLALFPG----------------------- 54 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-Cc--eeEEEEEcCCCcceEEEEcC-----------------------
Confidence 59999999999999999999999987654422 21 1223334333 33443321
Q ss_pred HHHHHHHHhcCCceeEEEEEEcCHH---HHHHHHHHCCCcccCCCeecc-CceEEEEEEecCCeEEEEee
Q 016432 112 AACRSFAASHGLAARSIAVEVEDAD---VAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V~Dvd---a~~~~a~a~Ga~~i~~P~~~~-~~~~~~~v~~~gg~~~~fve 177 (389)
.+..++.|++|.|+|++ +++++++++|++++.+|.... +......+++|+|..++|+.
T Consensus 55 --------~~~~~~~hl~~~v~d~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 116 (131)
T cd08343 55 --------PERPGLHHVAFEVESLDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSA 116 (131)
T ss_pred --------CCCCCeeEEEEEcCCHHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEc
Confidence 01347899999999875 789999999999887765422 23456789999999999987
No 64
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.11 E-value=8.8e-10 Score=89.15 Aligned_cols=112 Identities=16% Similarity=0.073 Sum_probs=74.7
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC-EEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~-~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
|+||.+.|+|++++++||++.|||+...+.....+ ...+..++ ..+.|........
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~i~l~~~~~~~~------------------ 57 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFP-----GAWLYAGDGPQLHLIEEDPPDA------------------ 57 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCC-----ceEEEeCCCcEEEEEecCCCcc------------------
Confidence 68999999999999999999999998754321111 12233333 2555554321110
Q ss_pred HHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEE
Q 016432 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLR 174 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~ 174 (389)
. ...+.+..+++|+|+|+++++++++++|++++.+|... .......+.+|+|..++
T Consensus 58 -~-----~~~~~~~~~~~~~v~d~~~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~DP~G~~iE 113 (114)
T cd07245 58 -L-----PEGPGRDDHIAFRVDDLDAFRARLKAAGVPYTESDVPG-DGVRQLFVRDPDGNRIE 113 (114)
T ss_pred -c-----cCCCcccceEEEEeCCHHHHHHHHHHcCCCcccccCCC-CCccEEEEECCCCCEEe
Confidence 0 11234678999999999999999999999988776542 23334556677776654
No 65
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.11 E-value=1.3e-09 Score=92.99 Aligned_cols=116 Identities=24% Similarity=0.242 Sum_probs=80.0
Q ss_pred eeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcC--CcceEEEeccCCCCCCCCchHHHHHh
Q 016432 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN--DEMVLLPMNEPVFGTKRKSQIQTYLE 284 (389)
Q Consensus 207 ~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~--~g~v~l~l~e~~~~~~~~s~i~~fl~ 284 (389)
.+|+|+++.|.|++++.+||+++|||+...... + ...++... .+...+.+.... .
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~---------~-~~~~~~~~~~~~~~~i~l~~~~---~---------- 58 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK---------G-RGAFLRAAGGGDHHNLFLIKTP---A---------- 58 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec---------C-cEEEEECCCCCCCcEEEEecCC---C----------
Confidence 579999999999999999999999999865422 1 12234433 233455554332 0
Q ss_pred hcCCCCcceEEEEeCCHHHHH---HHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCce
Q 016432 285 HNEGAGVQHLALVSEDIFRTL---REMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT 361 (389)
Q Consensus 285 ~~~g~GvqHiAf~vdDI~~a~---~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~ 361 (389)
...|++||||.|+|+.+.. ++|+++ |++....| ...+ .+ ..-.+|=+|.+|.
T Consensus 59 --~~~g~~hiaf~v~d~~~~~~~~~~l~~~----G~~~~~~~-~~~~------~~------------~~~~~y~~DP~G~ 113 (134)
T cd08360 59 --PMAGFHHAAFEVGDIDEVMLGGNHMLRA----GYQTGWGP-GRHR------IG------------SNYFWYFRDPWGG 113 (134)
T ss_pred --CCCcceEEEEEeCCHHHHHHHHHHHHHc----CCccccCC-CCcC------CC------------ccEEEEEECCCCC
Confidence 1368999999999998776 599999 99877655 2211 11 0112466788899
Q ss_pred EEEEecccc
Q 016432 362 LLQIFTKPV 370 (389)
Q Consensus 362 llqift~~~ 370 (389)
++++++...
T Consensus 114 ~iEl~~~~~ 122 (134)
T cd08360 114 EVEYGADMD 122 (134)
T ss_pred EEEEEcccc
Confidence 999998654
No 66
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.11 E-value=2.6e-09 Score=91.09 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=78.9
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcC----CEEEEEEccCCCCCccccccCCCCCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG----DLRFVFTAPYSPSISDAADAGNSSASL 106 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g----~~~i~l~~p~~~~~~~~~~~~~~~~~~ 106 (389)
.+++||.|.|+|++++.+||++.|||++..... . ....++.+ ...+.+.... .
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~-----~~~~~~~~~~~~~~~i~l~~~~--~-------------- 58 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G-----RGAFLRAAGGGDHHNLFLIKTP--A-------------- 58 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C-----cEEEEECCCCCCCcEEEEecCC--C--------------
Confidence 579999999999999999999999999876532 1 12234432 1345554321 0
Q ss_pred CCCChHHHHHHHHhcCCceeEEEEEEcCHHHHH---HHHHHCCCcccCCCeecc-CceEEEEEEecCCeEEEEee
Q 016432 107 PTFDHAACRSFAASHGLAARSIAVEVEDADVAF---NTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 107 ~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~---~~a~a~Ga~~i~~P~~~~-~~~~~~~v~~~gg~~~~fve 177 (389)
...|+.||||.|+|+++.. +++.++|+++...|...+ +......+++|+|..++|..
T Consensus 59 --------------~~~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~ 119 (134)
T cd08360 59 --------------PMAGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGA 119 (134)
T ss_pred --------------CCCcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEc
Confidence 1248999999999988777 599999999876554322 23345788999999998875
No 67
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.10 E-value=2.1e-09 Score=88.75 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=76.4
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEc-CCEEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GDLRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~-g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
|.+++||.+.|+|++++.+||.+ |||++..+.+ + .++ ++. |+..+.+.-...
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~---~----~~~-~~~~~~~~~~~~~~~~------------------ 53 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD---D----ELY-YRGYGTDPFVYVARKG------------------ 53 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC---C----eEE-EecCCCccEEEEcccC------------------
Confidence 57899999999999999999998 9999876532 1 122 343 332222221100
Q ss_pred CChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 109 FDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 109 ~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
...++.|+||.|+|.++..+.+.+.|+..+..+. .++......+++|+|..++|+-
T Consensus 54 ------------~~~~~~~~af~v~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 54 ------------EKARFVGAAFEAASRADLEKAAALPGASVIDDLE-APGGGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred ------------CcCcccEEEEEECCHHHHHHHHHcCCCeeecCCC-CCCCceEEEEECCCCCEEEEEe
Confidence 1236778999999999999999999998765543 2233456788899999998864
No 68
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.10 E-value=1.8e-09 Score=90.07 Aligned_cols=110 Identities=18% Similarity=0.149 Sum_probs=77.5
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEc--C-CEEEEEEccCCCCCccccccCCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--G-DLRFVFTAPYSPSISDAADAGNSSASL 106 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~--g-~~~i~l~~p~~~~~~~~~~~~~~~~~~ 106 (389)
+++++||.|.|+|++++.+||++.|||++..... .+. .++... + ...+.+...
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~~----~~~~~~~~~~~~~~~l~~~------------------ 57 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QGR----VYLKAWDEFDHHSIVLREA------------------ 57 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cce----EEEEccCCCcccEEEeccC------------------
Confidence 6889999999999999999999999999875431 111 222111 1 223333210
Q ss_pred CCCChHHHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeec-cCceEEEEEEecCCeEEEEee
Q 016432 107 PTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 107 ~~~~~~~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~-~~~~~~~~v~~~gg~~~~fve 177 (389)
...++.|+||.|+ |++++++++.++|+++...|... .+......+++|+|..++|..
T Consensus 58 --------------~~~~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 118 (122)
T cd07265 58 --------------DTAGLDFMGFKVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYA 118 (122)
T ss_pred --------------CCCCeeEEEEEeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEE
Confidence 1236789999997 89999999999999987655322 222346778899999998865
No 69
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.09 E-value=9.3e-10 Score=96.47 Aligned_cols=123 Identities=18% Similarity=0.160 Sum_probs=80.0
Q ss_pred ceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhh
Q 016432 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (389)
Q Consensus 206 ~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~ 285 (389)
-.+|+|++++|+|++++.+||+++|||++......... +..+....++...+....+.+....
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~i~~~~~~--------------- 69 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLP--PGPTARVTFLHCNGRHHSLALAEGP--------------- 69 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCC--CCCcceEEEEEeCCCCCCEEEEcCC---------------
Confidence 46799999999999999999999999998654321100 0112233344443323334332221
Q ss_pred cCCCCcceEEEEeCCHH---HHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceE
Q 016432 286 NEGAGVQHLALVSEDIF---RTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362 (389)
Q Consensus 286 ~~g~GvqHiAf~vdDI~---~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~l 362 (389)
.+.|++||||.|+|+. +++++|+++ |+++...| .. .+. ...-.+|=+|++|.+
T Consensus 70 -~~~g~~Hiaf~V~d~~~l~~~~~~L~~~----G~~v~~~~-~~--------~~~----------~~~~~~y~~DPdG~~ 125 (154)
T cd07237 70 -GPKRIHHLMLEVTSLDDVGRAYDRVRAR----GIPIAMTL-GR--------HTN----------DRMLSFYVRTPSGFA 125 (154)
T ss_pred -CCceeEEEEEEcCCHHHHHHHHHHHHHc----CCceeccC-Cc--------cCC----------CCcEEEEEECCCCcE
Confidence 2367999999998765 689999999 99998765 21 000 001124567889999
Q ss_pred EEEeccc
Q 016432 363 LQIFTKP 369 (389)
Q Consensus 363 lqift~~ 369 (389)
+++++..
T Consensus 126 iEl~~~~ 132 (154)
T cd07237 126 IEYGWGG 132 (154)
T ss_pred EEeccCc
Confidence 9998774
No 70
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.09 E-value=1.9e-09 Score=88.28 Aligned_cols=108 Identities=13% Similarity=0.054 Sum_probs=76.6
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHHH
Q 016432 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC 114 (389)
Q Consensus 35 HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (389)
||.+.|+|++++++||++.|||++..+.+ . ...++.++..+.+.......
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~------~~~~~~~~~~l~~~~~~~~~---------------------- 50 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K------EAYFELAGLWICLMEEDSLQ---------------------- 50 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c------eeEEEecCeEEEeccCCCcC----------------------
Confidence 89999999999999999999999875532 1 12344566666665421100
Q ss_pred HHHHHhcCCceeEEEEEE--cCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 115 RSFAASHGLAARSIAVEV--EDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 115 ~~~l~~hg~gv~~iaf~V--~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
..+.+..|+||.| +|+++++++++++|+++...+...........+++|+|..+++..
T Consensus 51 -----~~~~~~~hiaf~v~~~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 51 -----GPERTYTHIAFQIQSEEFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred -----CCCCCccEEEEEcCHHHHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 0123678999999 589999999999999976543322223456678899999988864
No 71
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.09 E-value=2.5e-09 Score=85.41 Aligned_cols=111 Identities=20% Similarity=0.187 Sum_probs=82.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHHH
Q 016432 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC 114 (389)
Q Consensus 35 HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (389)
||.+.|+|++++++||++.|||+....... + ......++.++..|.|..+..... .
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~--~~~~~~~~~~~~~i~l~~~~~~~~-------------------~- 56 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--G--GAEFAVLGLGGTRLELFEGDEPAP-------------------A- 56 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--C--CEEEEEEecCCceEEEecCCCCCC-------------------c-
Confidence 899999999999999999999998877531 1 124566777788888887532210 0
Q ss_pred HHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEE
Q 016432 115 RSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLR 174 (389)
Q Consensus 115 ~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~ 174 (389)
.++.++.|+||.|+|++++++++.++|+.+..+|...........+.+|+|..+.
T Consensus 57 -----~~~~~~~~~~~~v~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~ 111 (112)
T cd06587 57 -----PSGGGGVHLAFEVDDVDAAYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIE 111 (112)
T ss_pred -----ccCCCeeEEEEECCCHHHHHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEe
Confidence 2455789999999999999999999999988777522233455566666666543
No 72
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.08 E-value=4.2e-09 Score=93.03 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=75.7
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcC-C-EEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG-D-LRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g-~-~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
++|+||.|.|+|++++++||+++|||++......+.+.. . ...+..+ . ..+.+..
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~-~-~~~l~~~~~~~~i~l~~--------------------- 58 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTT-W-AAWLHRKGGVHDTALTG--------------------- 58 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcE-E-EEEEecCCCcceEEEec---------------------
Confidence 679999999999999999999999999875432222221 1 1222222 1 1222221
Q ss_pred CChHHHHHHHHhcCCceeEEEEEEcC---HHHHHHHHHHCCCcc-c-CCCeecc-CceEEEEEEecCCeEEEEee
Q 016432 109 FDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKP-S-SPPVILD-NLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 109 ~~~~~~~~~l~~hg~gv~~iaf~V~D---vda~~~~a~a~Ga~~-i-~~P~~~~-~~~~~~~v~~~gg~~~~fve 177 (389)
..+.++.|+||.|+| +++++++|+++|+.. + ..|.... .......+++|+|..++++.
T Consensus 59 -----------~~~~~~~Hiaf~v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~ 122 (161)
T cd07256 59 -----------GNGPRLHHVAFWVPEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYT 122 (161)
T ss_pred -----------CCCCceeEEEEEcCCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEee
Confidence 124478999999985 888999999999973 2 2342211 12345778899999999886
No 73
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.08 E-value=4.9e-09 Score=89.11 Aligned_cols=112 Identities=14% Similarity=0.204 Sum_probs=75.9
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCC----------ceeEEEEE-E--EcCCEEEEEEccCCCCCccccc
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTG----------NTVHASYL-L--RSGDLRFVFTAPYSPSISDAAD 98 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g----------~r~~~~~~-~--~~g~~~i~l~~p~~~~~~~~~~ 98 (389)
++.|+.+.|+|++++++||+++|||++..+...++| ..+..+.+ + ..++..++|+......
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~------ 75 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIG------ 75 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCC------
Confidence 589999999999999999999999998776544432 11111112 1 1234566666421111
Q ss_pred cCCCCCCCCCCChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 99 AGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
. + ..|.+ +++|.|+|. .+.++++++|+++...|.. +.+|++|+|..++|+|
T Consensus 76 --------------~---~--~~g~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~~------~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 76 --------------D---Y--ELGND--FLGITIHSK-QAVSNAKKHNWPVTEVEDG------VYEVKAPGGYKFYLID 126 (127)
T ss_pred --------------C---C--CCCCC--EEEEEEECH-HHHHHHHHCCCceecCCCC------EEEEECCCCCEEEEec
Confidence 0 0 12334 677777777 4559999999987765541 7899999999999987
No 74
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.07 E-value=2.5e-09 Score=88.50 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=76.9
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC-EEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~-~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
+.+|+||.|+|+|++++.+||++.|||++....+ + ...++.++ ...++.... .
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~-~----------------- 54 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD---G-----IVYLRATGSEHHILRLRR-S----------------- 54 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC---C-----EEEEECCCCccEEEEecc-C-----------------
Confidence 4689999999999999999999999999875532 1 22334332 222221110 0
Q ss_pred CChHHHHHHHHhcCCceeEEEEEE---cCHHHHHHHHHHCCCcccCCCee--ccCceEEEEEEecCCeEEEEee
Q 016432 109 FDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVI--LDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 109 ~~~~~~~~~l~~hg~gv~~iaf~V---~Dvda~~~~a~a~Ga~~i~~P~~--~~~~~~~~~v~~~gg~~~~fve 177 (389)
..+++.|++|.| +|+++++++++++|+++..+|.. .+.......+++|+|..++++.
T Consensus 55 ------------~~~~~~~~~~~v~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 116 (120)
T cd08362 55 ------------DRNRLDVVSFSVASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSA 116 (120)
T ss_pred ------------CCCCCceEEEEeCCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEe
Confidence 012567899999 57999999999999998776532 2223445678889999888875
No 75
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.07 E-value=7.8e-10 Score=92.06 Aligned_cols=118 Identities=15% Similarity=0.119 Sum_probs=77.9
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChH
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (389)
++||.+.|+|++++++||. .|||+.....+. .. ...+...++..|.|........ .. +
T Consensus 1 ~~~i~l~V~D~~~a~~FY~-~LGf~~~~~~~~---~~--~~~~~~~~~~~l~l~~~~~~~~-~~----------~----- 58 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYR-RLGFDFPEEADD---EP--HVEAVLPGGVRLAWDTVESIRS-FT----------P----- 58 (122)
T ss_pred CceEEEEeccHHHHHHHHH-HhCceecCCcCC---CC--cEEEEeCCCEEEEEEcccceee-ec----------C-----
Confidence 5899999999999999996 599997643221 01 1222223467777654311100 00 0
Q ss_pred HHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEe
Q 016432 113 ACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV 176 (389)
Q Consensus 113 ~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fv 176 (389)
.. ...+.+..+++|.|. |+++++++++++|++++.+|...+.+.+.+.+++|+|..++|+
T Consensus 59 ~~----~~~~~~~~~l~~~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 59 GW----TPTGGHRIALAFLCETPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CC----CCCCCCcEEEEEEcCCHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 00 001224457888765 8999999999999998888876555566788999999988775
No 76
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.06 E-value=3.9e-08 Score=91.93 Aligned_cols=216 Identities=13% Similarity=0.093 Sum_probs=132.0
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEE-EEEEccCCCCCccccccCCCCCCCCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLR-FVFTAPYSPSISDAADAGNSSASLPTF 109 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~-i~l~~p~~~~~~~~~~~~~~~~~~~~~ 109 (389)
+.+.-|.|.|+|++.+..||++++|+++..+.+ ....+..|+.. +.|.+..... + .
T Consensus 9 ~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~--------~~v~L~vgg~~LL~L~q~~~a~-~----------~---- 65 (265)
T COG2514 9 TFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD--------GSVTLGVGGTPLLTLEQFPDAR-R----------P---- 65 (265)
T ss_pred cEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC--------ceEEEeeCCEEEEEEEeCCCCC-C----------C----
Confidence 679999999999999999999999999997643 13344555543 4444311110 0 0
Q ss_pred ChHHHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccC-CCeeccCceEEEEEEecCCeEEEEeecCCCCCCC
Q 016432 110 DHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSS-PPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHL 185 (389)
Q Consensus 110 ~~~~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~-~P~~~~~~~~~~~v~~~gg~~~~fve~~~~~~~g 185 (389)
..+..|..|+||.++ |..+.+.+|...|..+.. .+.. --....+.+|.|.-+++.-.++. ...
T Consensus 66 ---------~~~~aGLyH~AfLlP~r~~L~~~l~hl~~~~~~l~Ga~DH~---vSEAlYl~DPEGNGIEiYaDrp~-~~W 132 (265)
T COG2514 66 ---------PPRAAGLYHTAFLLPTREDLARVLNHLAEEGIPLVGASDHL---VSEALYLEDPEGNGIEIYADRPR-STW 132 (265)
T ss_pred ---------CccccceeeeeeecCCHHHHHHHHHHHHhcCCcccccCcch---hheeeeecCCCCCeEEEEecCCh-HHh
Confidence 013459999999999 577788889999987641 1221 11244567899998887652111 001
Q ss_pred CCCCC-------------CccCCCCCCCCccccceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceE
Q 016432 186 DFLPG-------------FEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNS 252 (389)
Q Consensus 186 ~~lp~-------------f~~~~~~~~~~~~~~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s 252 (389)
.|..+ +........-..-..-+.|-||.+.|.+++++.+||+++|||+...+.. .+
T Consensus 133 ~~~~~~v~m~t~~ld~~~ll~~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~-----------~A 201 (265)
T COG2514 133 DWQNDQVKMDTEPLDVEALLEEATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP-----------SA 201 (265)
T ss_pred cccCCeeeecccccCHHHHhhhccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC-----------cc
Confidence 12111 1000000000001135789999999999999999999999999876521 23
Q ss_pred EEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCCcceEEEEeCC
Q 016432 253 VVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSED 300 (389)
Q Consensus 253 ~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~GvqHiAf~vdD 300 (389)
.++...+=...|..|.-.....++ +...-.|+-.+.+.+++
T Consensus 202 ~F~a~G~YHHHia~N~W~s~~~~~-------~~~~~~GLa~~~i~~~~ 242 (265)
T COG2514 202 LFLASGDYHHHLAANTWNSRGARP-------RNANASGLAWLEIHTPD 242 (265)
T ss_pred eEEecCCcceeEEEeccccCCCCC-------CCCCCCCcceEEEEcCC
Confidence 444454446667776553210000 01123578888888876
No 77
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.06 E-value=2.3e-09 Score=88.65 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=66.1
Q ss_pred ceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhh
Q 016432 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (389)
Q Consensus 206 ~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~ 285 (389)
+++|+|+++.|+|++++++||+++|||+........+ .+.....+.. ++...++|..... .... ...
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~-----~~~~~~~~~~-~~~~~i~l~~~~~--~~~~-----~~~ 67 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPE-----RGSYKLDLLL-NGGYQLELFSFPN--PPER-----PSY 67 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCC-----CCcEEEEEec-CCCcEEEEEEcCC--CCCC-----CCC
Confidence 3679999999999999999999999999865432111 1111122222 2223344432221 0000 001
Q ss_pred cCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 286 NEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 286 ~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
..+.|++|+||.|+|++++.++|+++ |+++...|
T Consensus 68 ~~~~g~~h~~~~v~d~~~~~~~l~~~----G~~~~~~~ 101 (125)
T cd08352 68 PEACGLRHLAFSVEDIEAAVKHLKAK----GVEVEPIR 101 (125)
T ss_pred CcCCCceEEEEEeCCHHHHHHHHHHc----CCcccccc
Confidence 13468999999999999999999999 99988755
No 78
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.06 E-value=4.8e-09 Score=91.95 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=79.5
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCC--CCceeEEEEEEEcCC--EEEEEEccCCCCCccccccCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLS--TGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSAS 105 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~--~g~r~~~~~~~~~g~--~~i~l~~p~~~~~~~~~~~~~~~~~ 105 (389)
-++|+||.|.|+|++++++||++.|||++....... ++.. ....+++.++ ..+.+...
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~i~~~~~----------------- 68 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPT-ARVTFLHCNGRHHSLALAEG----------------- 68 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCc-ceEEEEEeCCCCCCEEEEcC-----------------
Confidence 478999999999999999999999999987643211 1111 1233333332 22333211
Q ss_pred CCCCChHHHHHHHHhcCCceeEEEEEEcCHH---HHHHHHHHCCCcccCCCeecc-CceEEEEEEecCCeEEEEee
Q 016432 106 LPTFDHAACRSFAASHGLAARSIAVEVEDAD---VAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 106 ~~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvd---a~~~~a~a~Ga~~i~~P~~~~-~~~~~~~v~~~gg~~~~fve 177 (389)
..+.++.||||.|+|++ +++++++++|+++..+|...+ +......+++|+|..++|..
T Consensus 69 --------------~~~~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~ 130 (154)
T cd07237 69 --------------PGPKRIHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGW 130 (154)
T ss_pred --------------CCCceeEEEEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEecc
Confidence 01347999999998754 689999999999877664322 23456678899999998875
No 79
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.05 E-value=2.5e-09 Score=93.02 Aligned_cols=127 Identities=17% Similarity=0.284 Sum_probs=82.1
Q ss_pred cceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCC--cceEEEeccCCCCCCCCchHHHH
Q 016432 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTY 282 (389)
Q Consensus 205 ~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~--g~v~l~l~e~~~~~~~~s~i~~f 282 (389)
..++|+|+.+.|.|++++..||+++|||+.....+..+ .+....++...+ ....+.+..... ...
T Consensus 14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----- 80 (150)
T TIGR00068 14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPE-----MKFSLAFLGYGDETSAAVIELTHNWG---TEK----- 80 (150)
T ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCC-----CceEEEEecCCCCCCccEEEEeecCC---CCc-----
Confidence 46899999999999999999999999999865443211 112222332222 223344433221 000
Q ss_pred HhhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceE
Q 016432 283 LEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362 (389)
Q Consensus 283 l~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~l 362 (389)
...+.|++|++|.|+||++++++|+++ |++++..| .. .. -+ ...+.|=+|.+|+.
T Consensus 81 --~~~~~g~~hi~f~v~dld~~~~~l~~~----G~~~~~~~-~~-~~-----~~------------~~~~~~~~DPdG~~ 135 (150)
T TIGR00068 81 --YDLGNGFGHIAIGVDDVYKACERVRAL----GGNVVREP-GP-VK-----GG------------TTVIAFVEDPDGYK 135 (150)
T ss_pred --ccCCCceeEEEEecCCHHHHHHHHHHc----CCccccCC-cc-cC-----CC------------ceEEEEEECCCCCE
Confidence 113468999999999999999999999 99988766 21 00 00 01133447788888
Q ss_pred EEEeccc
Q 016432 363 LQIFTKP 369 (389)
Q Consensus 363 lqift~~ 369 (389)
+++++..
T Consensus 136 iel~~~~ 142 (150)
T TIGR00068 136 IELIQRK 142 (150)
T ss_pred EEEEECC
Confidence 8887755
No 80
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.05 E-value=6.3e-09 Score=84.68 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=80.2
Q ss_pred EEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHHHHH
Q 016432 37 EFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRS 116 (389)
Q Consensus 37 ~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (389)
.|.|+|++++++||++.|||+.....+ . . ....++.++..+.|.....+.. .
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~-~--~---~~~~~~~~~~~~~l~~~~~~~~-------------------~--- 54 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP-E--P---GYAFLSRGGAQLMLSEHDGDEP-------------------V--- 54 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC-C--C---cEEEEEeCCEEEEEeccCCCCC-------------------C---
Confidence 689999999999999999999887643 1 1 1345566888888765422110 0
Q ss_pred HHHhcCCceeEEEEEEcCHHHHHHHHHHCCCc-ccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 117 FAASHGLAARSIAVEVEDADVAFNTSVAHGAK-PSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 117 ~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~-~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
...+..+++|.|+|+++++++++++|++ +..+|.......+...+++|+|..+.|+|
T Consensus 55 ----~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 55 ----PLGRGGSVYIEVEDVDALYAELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred ----CCCCcEEEEEEeCCHHHHHHHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 2235558999999999999999999998 55566554445566778899999888864
No 81
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.04 E-value=3.2e-09 Score=87.22 Aligned_cols=107 Identities=17% Similarity=0.160 Sum_probs=79.5
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcC---CEEEEEEccCCCCCccccccCCCCCCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG---DLRFVFTAPYSPSISDAADAGNSSASLP 107 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g---~~~i~l~~p~~~~~~~~~~~~~~~~~~~ 107 (389)
++++||.|.|+|++++++||++.|||++....+ . ...++.+ ...+.+...
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~------------------- 53 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----G----SVYLRCSEDDHHSLVLTEG------------------- 53 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----C----eEEEecCCCCcEEEEEEeC-------------------
Confidence 479999999999999999999999999886532 1 2233433 334444321
Q ss_pred CCChHHHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 108 TFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 108 ~~~~~~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
...++.|++|.|+ |+++++++++++|+++...|...++......+.+|+|..++++.
T Consensus 54 -------------~~~~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 113 (117)
T cd07240 54 -------------DEPGVDALGFEVASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFV 113 (117)
T ss_pred -------------CCCCceeEEEEcCCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEE
Confidence 1136789999997 68999999999999988777543344456678889999888875
No 82
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.04 E-value=4.6e-09 Score=87.73 Aligned_cols=107 Identities=15% Similarity=0.074 Sum_probs=78.0
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
+|+||.|.|+|++++.+||++.|||++....+ . ...+..++..+.+... +.
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~------~~~~~~~~~~~~l~~~--~~------------------- 51 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K------GAYLEAGDLWLCLSVD--AN------------------- 51 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C------ceEEecCCEEEEEecC--CC-------------------
Confidence 58999999999999999999999999876432 1 1224456655554321 11
Q ss_pred HHHHHHHHhcCCceeEEEEEE--cCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 112 AACRSFAASHGLAARSIAVEV--EDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V--~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
. ....+..|+||.| +|+++++++++++|++++.++... .....+++|+|..++|..
T Consensus 52 -~------~~~~~~~hi~f~v~~~dl~~~~~~l~~~G~~~~~~~~~~---~~~~~f~DPdG~~ie~~~ 109 (121)
T cd07244 52 -V------GPAKDYTHYAFSVSEEDFASLKEKLRQAGVKEWKENTSE---GDSFYFLDPDGHKLELHV 109 (121)
T ss_pred -C------CCCCCeeeEEEEeCHHHHHHHHHHHHHcCCcccCCCCCC---ccEEEEECCCCCEEEEEe
Confidence 0 0123678999998 589999999999999987665432 246678899999998876
No 83
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.03 E-value=6.4e-09 Score=86.62 Aligned_cols=107 Identities=17% Similarity=0.119 Sum_probs=77.6
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHHH
Q 016432 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC 114 (389)
Q Consensus 35 HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (389)
...|.|+|++++++||++ |||+...+... ....++.++..+.|.......
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-------~~~~~~~~~~~l~l~~~~~~~---------------------- 54 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-------GYMILRRGDLELHFFAHPDLD---------------------- 54 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-------CEEEEEcCCEEEEEEecCcCC----------------------
Confidence 467899999999999998 99998765321 134456777777776421100
Q ss_pred HHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcc-------cCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 115 RSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKP-------SSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 115 ~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~-------i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
......+++|.|+|+++++++++++|+++ +.+|...+.+.+...+++|+|..++|++
T Consensus 55 ------~~~~~~~~~~~v~dvd~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~ 118 (120)
T cd08350 55 ------PATSPFGCCLRLPDVAALHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQ 118 (120)
T ss_pred ------CCCCcceEEEEeCCHHHHHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeec
Confidence 01123468999999999999999999974 3345544456678889999999998876
No 84
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.03 E-value=2.1e-09 Score=89.19 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=67.7
Q ss_pred eEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcC
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~ 287 (389)
+|+|++++|.|++++++||+++|||+.......+ ..+..+.++... +...++|.+... ..... . ..+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~----~-~~~ 67 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNP-----RKGFESYFLSFD-DGARLELMTRPD--IAPSP----N-EGE 67 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCC-----CCCceEEEEecC-CCcEEEEEcCcc--cCCCc----c-cCC
Confidence 4789999999999999999999999975433221 134444445443 334566654321 11110 1 113
Q ss_pred CCCcceEEEEeC---CHHHHHHHHHHhcCCCCceecCCC
Q 016432 288 GAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 288 g~GvqHiAf~vd---DI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
..|++||||.|+ ||++.+++|+++ |++++..|
T Consensus 68 ~~g~~hi~f~v~~~~~v~~~~~~l~~~----g~~~~~~~ 102 (125)
T cd07241 68 RTGWAHLAFSVGSKEAVDELTERLRAD----GYLIIGEP 102 (125)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHC----CCEEEeCc
Confidence 468999999995 589999999999 99998765
No 85
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.02 E-value=7.2e-09 Score=89.87 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=77.9
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC--EEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~--~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
.+++||.|.|+|++++++||++.|||++....+ + ....++.++ ..+.+...
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~-----~~~~l~~~~~~~~~~l~~~-------------------- 55 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D-----QMAFLRCNSDHHSIAIARG-------------------- 55 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C-----eEEEEECCCCcceEEEccC--------------------
Confidence 479999999999999999999999999865421 0 122334332 33443321
Q ss_pred CChHHHHHHHHhcCCceeEEEEEEcCHHHHH---HHHHHCCCcccCCCee-ccCceEEEEEEecCCeEEEEee
Q 016432 109 FDHAACRSFAASHGLAARSIAVEVEDADVAF---NTSVAHGAKPSSPPVI-LDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 109 ~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~---~~a~a~Ga~~i~~P~~-~~~~~~~~~v~~~gg~~~~fve 177 (389)
...++.|+||.|+|++++. ++++++|+++..+|.. ..+...+..+++|+|..++|++
T Consensus 56 ------------~~~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~ 116 (144)
T cd07239 56 ------------PHPSLNHVAFEMPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTS 116 (144)
T ss_pred ------------CCCceEEEEEECCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEecc
Confidence 1237889999999988875 8999999998766532 2223345678999999999987
No 86
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.02 E-value=3.2e-09 Score=89.39 Aligned_cols=116 Identities=14% Similarity=0.171 Sum_probs=79.5
Q ss_pred cceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHh
Q 016432 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE 284 (389)
Q Consensus 205 ~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~ 284 (389)
.+.+|+|+++.|+|++++.+||+++|||++..+.. + ..++..+.....+.+..+
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~---------~--~~~l~~~~~~~~i~l~~~--------------- 56 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA---------K--ATYFRSDARDHTLVYIEG--------------- 56 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC---------C--eEEEEcCCccEEEEEEeC---------------
Confidence 57899999999999999999999999999864311 1 233444333444544322
Q ss_pred hcCCCCcceEEEEeCC---HHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCce
Q 016432 285 HNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT 361 (389)
Q Consensus 285 ~~~g~GvqHiAf~vdD---I~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~ 361 (389)
.++.+|+||+|+| +++++++|+++ |+++...| .. ....+-+ . ..++=+|.+|.
T Consensus 57 ---~~~~~~iaf~v~~~~dv~~~~~~l~~~----G~~~~~~~-~~---~~~~~~~-----------~--~~~~f~DPdG~ 112 (124)
T cd08361 57 ---DPAEQASGFELRDDDALESAATELEQY----GHEVRRGT-AE---ECELRKV-----------K--AFIAFRDPSGN 112 (124)
T ss_pred ---CCceEEEEEEECCHHHHHHHHHHHHHc----CCceEEcC-HH---HhhcCCc-----------c--eEEEEECcCCC
Confidence 1346899999986 99999999999 99987755 21 0000000 0 12355678888
Q ss_pred EEEEecccc
Q 016432 362 LLQIFTKPV 370 (389)
Q Consensus 362 llqift~~~ 370 (389)
.+.+|..|.
T Consensus 113 ~iE~~~~~~ 121 (124)
T cd08361 113 SIELVVRPS 121 (124)
T ss_pred EEEEEEeee
Confidence 888888775
No 87
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.02 E-value=5.2e-09 Score=88.99 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=79.8
Q ss_pred cceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHh
Q 016432 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE 284 (389)
Q Consensus 205 ~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~ 284 (389)
++.+|+|+++.|+|++++++||+++|||++.++...... ..+ ...+... +...+.+..+.. .
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~---~~~-~~~~~~~--~~~~i~l~~~~~----~-------- 62 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTF---SLS-KEKFFLI--GGLWIAIMEGDS----L-------- 62 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccc---ccc-ceeEEEc--CCeEEEEecCCC----C--------
Confidence 367899999999999999999999999987654221100 011 1111222 234555553321 0
Q ss_pred hcCCCCcceEEEEeC--CHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceE
Q 016432 285 HNEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362 (389)
Q Consensus 285 ~~~g~GvqHiAf~vd--DI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~l 362 (389)
...+++||||.|+ |+++..++|+++ |+++..++ .... + ...-+|=+|++|.+
T Consensus 63 --~~~~~~Hiaf~v~~~~ld~~~~~l~~~----gv~~~~~~--~~~~------~------------~g~~~yf~DPdG~~ 116 (131)
T cd08364 63 --QERTYNHIAFKISDSDVDEYTERIKAL----GVEMKPPR--PRVQ------G------------EGRSIYFYDFDNHL 116 (131)
T ss_pred --CCCCceEEEEEcCHHHHHHHHHHHHHC----CCEEecCC--cccc------C------------CceEEEEECCCCCE
Confidence 1236899999998 799999999999 99876543 1110 0 00133557889999
Q ss_pred EEEeccccC
Q 016432 363 LQIFTKPVG 371 (389)
Q Consensus 363 lqift~~~~ 371 (389)
+++++..+-
T Consensus 117 iEl~~~~~~ 125 (131)
T cd08364 117 FELHTGTLE 125 (131)
T ss_pred EEEecCCHH
Confidence 999876653
No 88
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.01 E-value=3.6e-09 Score=88.74 Aligned_cols=94 Identities=22% Similarity=0.316 Sum_probs=68.6
Q ss_pred eEeEEEEecCCHHHHHHHHHHhh---CCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHh
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFT---GFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE 284 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~l---Gf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~ 284 (389)
+|+||++.|.|++++.+||+++| ||++..... .+. .+... .+...|.|..+.. ..+. ...
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--------~~~-~~~~~--~~~~~i~l~~~~~---~~~~---~~~ 63 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--------DGR-SWRAG--DGGTYLVLQQADG---ESAG---RHD 63 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--------cCc-eEEec--CCceEEEEEeccc---CCCc---ccc
Confidence 48999999999999999999999 999876532 121 12111 3456777766642 1111 122
Q ss_pred hcCCCCcceEEEEeC---CHHHHHHHHHHhcCCCCceecCCC
Q 016432 285 HNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 285 ~~~g~GvqHiAf~vd---DI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
..+.|++|+||.|+ ||++++++|+++ |+++...|
T Consensus 64 -~~~~g~~hia~~v~~~~d~~~~~~~l~~~----g~~~~~~~ 100 (128)
T cd07242 64 -RRNPGLHHLAFRAPSREAVDELYARLAKR----GAEILYAP 100 (128)
T ss_pred -cCCcCeeEEEEEcCCHHHHHHHHHHHHHc----CCeEecCC
Confidence 24678999999997 589999999999 99999877
No 89
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.01 E-value=4.7e-09 Score=88.32 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=78.0
Q ss_pred CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcC--CEEEEEEccCCCCCccccccCCCCCCC
Q 016432 29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--DLRFVFTAPYSPSISDAADAGNSSASL 106 (389)
Q Consensus 29 ~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g--~~~i~l~~p~~~~~~~~~~~~~~~~~~ 106 (389)
.+.+|.||.+.|+|++++.+||+++|||++..+.+ + ...++.+ ...+.+....
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~---~-----~~~l~~~~~~~~i~l~~~~----------------- 57 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA---K-----ATYFRSDARDHTLVYIEGD----------------- 57 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC---C-----eEEEEcCCccEEEEEEeCC-----------------
Confidence 57899999999999999999999999999865421 1 1223433 2444544210
Q ss_pred CCCChHHHHHHHHhcCCceeEEEEEEcC---HHHHHHHHHHCCCcccCCCeec---cCceEEEEEEecCCeEEEEee
Q 016432 107 PTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVIL---DNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 107 ~~~~~~~~~~~l~~hg~gv~~iaf~V~D---vda~~~~a~a~Ga~~i~~P~~~---~~~~~~~~v~~~gg~~~~fve 177 (389)
++..++||+|+| ++++++++.++|+++...|... .+...+..+++|+|..++++.
T Consensus 58 ----------------~~~~~iaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~ 118 (124)
T cd08361 58 ----------------PAEQASGFELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVV 118 (124)
T ss_pred ----------------CceEEEEEEECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEE
Confidence 145679999985 9999999999999876544321 122445678899999998876
No 90
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.01 E-value=7e-09 Score=91.57 Aligned_cols=119 Identities=23% Similarity=0.315 Sum_probs=75.1
Q ss_pred eeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCc-eEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhh
Q 016432 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGL-NSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (389)
Q Consensus 207 ~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~-~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~ 285 (389)
.+|+|+++.|+|++++++||+++|||++......+ .+. ...++....+...+.+...
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~------~~~~~~~~l~~~~~~~~i~l~~~---------------- 59 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDD------DGTTWAAWLHRKGGVHDTALTGG---------------- 59 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccC------CCcEEEEEEecCCCcceEEEecC----------------
Confidence 57999999999999999999999999986433211 121 1222332222233333211
Q ss_pred cCCCCcceEEEEeCC---HHHHHHHHHHhcCCCCcee-cCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCce
Q 016432 286 NEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEF-MPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT 361 (389)
Q Consensus 286 ~~g~GvqHiAf~vdD---I~~a~~~l~~~~~~~Gv~~-l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~ 361 (389)
.++|++|+||.|+| +.+++++|+++ |+.. +..+|.. -+ ......+|=.|.+|.
T Consensus 60 -~~~~~~Hiaf~v~~~~~v~~~~~~L~~~----G~~~~~~~~p~~--------~g----------~~~~~~~y~~DPdG~ 116 (161)
T cd07256 60 -NGPRLHHVAFWVPEPHNIIRTCDLLAAA----GYSDRIERGPGR--------HG----------ISNAFFLYLRDPDGH 116 (161)
T ss_pred -CCCceeEEEEEcCCHHHHHHHHHHHHHc----CCCcccccCCCc--------cC----------CCCceEEEEECCCCC
Confidence 34679999999986 88899999999 9863 2111010 11 001112455678888
Q ss_pred EEEEecccc
Q 016432 362 LLQIFTKPV 370 (389)
Q Consensus 362 llqift~~~ 370 (389)
++.+++.+.
T Consensus 117 ~iEl~~~~~ 125 (161)
T cd07256 117 RIEIYTGDY 125 (161)
T ss_pred eEEEeecCc
Confidence 888887765
No 91
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.01 E-value=1.7e-08 Score=84.05 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=79.3
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC--EEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~--~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
++|+||.|.|+|++++++||++.|||++....+ . .+.+..++ ..|.+.......
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~----~~~l~~~~~~~~l~l~~~~~~~---------------- 56 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD----S----TAVLGTGGKRPLLVLEEDPDAP---------------- 56 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC----C----EEEEecCCCeEEEEEEeCCCCC----------------
Confidence 579999999999999999999999999986632 1 22344443 556665431100
Q ss_pred CChHHHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 109 FDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 109 ~~~~~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
....+..+..|++|.|+ |++++++++.++|+++.. |... .......+++|+|..++|..
T Consensus 57 --------~~~~~~~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~-~~~~-~~~~~~~~~DPdG~~iEi~~ 118 (125)
T cd07255 57 --------PAPPGATGLYHFAILLPSRADLAAALRRLIELGIPLVG-ASDH-LVSEALYLSDPEGNGIEIYA 118 (125)
T ss_pred --------cccCCCCcEEEEEEECCCHHHHHHHHHHHHHcCCceec-cccc-cceeEEEEECCCCCEEEEEE
Confidence 00112347889999997 599999999999998643 3221 12345678899999998876
No 92
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.01 E-value=6.1e-09 Score=84.42 Aligned_cols=104 Identities=15% Similarity=0.020 Sum_probs=73.5
Q ss_pred EEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC----EEEEEEccCCCCCccccccCCCCCCCCCCChHH
Q 016432 38 FWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADAGNSSASLPTFDHAA 113 (389)
Q Consensus 38 ~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~----~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (389)
|.|+|++++++||.+.|||++....+ +. ..+..+. -...+.....+.
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~--------------------- 51 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP---DY-----VDFSLGFRFHDGVIEFLQFPDPP--------------------- 51 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET---SE-----EEEEETEEEEEEEEEEEEEESSS---------------------
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC---Ce-----EEEEeccchhhhhHHHccCCccc---------------------
Confidence 68999999999999999999998543 11 1122221 112222211111
Q ss_pred HHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEe
Q 016432 114 CRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV 176 (389)
Q Consensus 114 ~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fv 176 (389)
....+..+++|.|+|+++++++++++|++++.+|.....+.....+.+|+|..++|+
T Consensus 52 ------~~~~~~~~~~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 52 ------GPPGGGFHLCFEVEDVDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp ------SSSSSEEEEEEEESHHHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred ------cCCCceeEEEEEEcCHHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 023367899999999999999999999999888887666677888899999988875
No 93
>PLN02300 lactoylglutathione lyase
Probab=98.99 E-value=8.7e-09 Score=99.49 Aligned_cols=139 Identities=17% Similarity=0.261 Sum_probs=89.3
Q ss_pred ccceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcC--CcceEEEeccCCCCCCCCchHHH
Q 016432 204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN--DEMVLLPMNEPVFGTKRKSQIQT 281 (389)
Q Consensus 204 ~~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~--~g~v~l~l~e~~~~~~~~s~i~~ 281 (389)
..+.+|+|+++.|.|++++++||+++|||+.......++ .+....++... ...+.+++..... ...
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~-----~~~~~~~l~~g~~~~~~~lel~~~~~--~~~----- 87 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE-----EKYTNAFLGYGPEDSNFVVELTYNYG--VDK----- 87 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCC-----CcEEEEEEccCCCCCceEEEEeccCC--CCc-----
Confidence 358999999999999999999999999999876533211 12222333322 2334455543210 000
Q ss_pred HHhhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCce
Q 016432 282 YLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT 361 (389)
Q Consensus 282 fl~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~ 361 (389)
...+.|++|+||.|+|+++++++|++. |++++..| .. .. -+ ...+.+=.|.+|+
T Consensus 88 ---~~~~~g~~hia~~v~dvd~~~~~l~~~----G~~i~~~~-~~-~~-----~g------------~~~~~~~~DPdG~ 141 (286)
T PLN02300 88 ---YDIGTGFGHFGIAVEDVAKTVELVKAK----GGKVTREP-GP-VK-----GG------------KSVIAFVKDPDGY 141 (286)
T ss_pred ---cccCCCccEEEEEeCCHHHHHHHHHHC----CCeeecCC-cc-cC-----CC------------ceEEEEEECCCCC
Confidence 113568999999999999999999999 99988776 32 10 00 0113344678888
Q ss_pred EEEEeccccCCCCceEEEE
Q 016432 362 LLQIFTKPVGDRYVHLLML 380 (389)
Q Consensus 362 llqift~~~~~~~~~FfE~ 380 (389)
.+.++.++....+.-.++|
T Consensus 142 ~iEl~~~~~~~~~~~~~~l 160 (286)
T PLN02300 142 KFELIQRGPTPEPLCQVML 160 (286)
T ss_pred EEEEEeCCCCCCcceeEEE
Confidence 8888887654433333443
No 94
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.99 E-value=1e-08 Score=93.56 Aligned_cols=214 Identities=16% Similarity=0.204 Sum_probs=132.0
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCC----------cee-EEEEEEEcCCEEEEEEccCCCCCcccccc
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTG----------NTV-HASYLLRSGDLRFVFTAPYSPSISDAADA 99 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g----------~r~-~~~~~~~~g~~~i~l~~p~~~~~~~~~~~ 99 (389)
.+.-|+.|-|.|.++++.||+++|||++...++.++| .+| +...-+..-+.+|++--..+
T Consensus 16 ~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYN--------- 86 (299)
T KOG2943|consen 16 RRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYN--------- 86 (299)
T ss_pred hheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEec---------
Confidence 5678999999999999999999999999876665552 222 22222222344444322111
Q ss_pred CCCCCCCCCCChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEeecC
Q 016432 100 GNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK 179 (389)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve~~ 179 (389)
| .+++| .-|.+..+|++.++|+-...+...+.|.+ ...-.++.+.+|+|...+++++.
T Consensus 87 ---------Y---gV~~Y--elGndfg~i~I~s~dv~~~ve~v~~p~~~--------~~g~~~~~v~dPdGykF~l~~~~ 144 (299)
T KOG2943|consen 87 ---------Y---GVSKY--ELGNDFGGITIASDDVFSKVEKVNAPGGK--------GSGCGIAFVKDPDGYKFYLIDRG 144 (299)
T ss_pred ---------c---Cccce--eccCCcccEEEeHHHHHHHHHHhcCcCCc--------ccceEEEEEECCCCcEEEEeccC
Confidence 1 11111 13667889999999987777766555432 23445788889999999998831
Q ss_pred CCCCCCCCCCCCccCCCCCCCCccccceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCC
Q 016432 180 DKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND 259 (389)
Q Consensus 180 ~~~~~g~~lp~f~~~~~~~~~~~~~~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~ 259 (389)
+. |+ . +-.|.++|.|+++++.||++.|||+..+.-.. . ....|.-.+
T Consensus 145 p~-------s~--------------p---v~~V~l~VgdL~ks~kyw~~~lgM~ilekeek------~---t~~~mgYgd 191 (299)
T KOG2943|consen 145 PQ-------SD--------------P---VLQVMLNVGDLQKSIKYWEKLLGMKILEKEEK------Y---TRARMGYGD 191 (299)
T ss_pred CC-------CC--------------C---eEEEEEEehhHHHHHHHHHHHhCcchhhhhhh------h---hhhhhccCC
Confidence 11 00 1 22588999999999999999999998753110 0 111222234
Q ss_pred cceEEEeccCCCCCCCCchHHHHHhhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCC
Q 016432 260 EMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS 322 (389)
Q Consensus 260 g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~ 322 (389)
+.+.|+|..... -+++-.|-|--.+|+-++|+...-+.++.. +-+++.+
T Consensus 192 ~q~~LElt~~~~----------~id~~kg~griafaip~d~~~~l~e~iK~~----n~~i~~~ 240 (299)
T KOG2943|consen 192 EQCVLELTYNYD----------VIDRAKGFGRIAFAIPTDDLPKLQEAIKSA----NGTILTP 240 (299)
T ss_pred cceEEEEEeccC----------cccccccceeEEEeccccccccHHHHHHHh----ccccccc
Confidence 557777643320 022223334444555557887778888877 6555553
No 95
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=98.99 E-value=5.9e-09 Score=86.92 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=62.9
Q ss_pred ceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcC--CcceEEEeccCCCCCCCCchHHHHH
Q 016432 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN--DEMVLLPMNEPVFGTKRKSQIQTYL 283 (389)
Q Consensus 206 ~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~--~g~v~l~l~e~~~~~~~~s~i~~fl 283 (389)
+.+|+|+++.|.|++++.+||+++|||+...... .+ . ..+... .+...+.+...
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--------~~-~-~~~~~~~~~~~~~~~l~~~-------------- 57 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--------QG-R-VYLKAWDEFDHHSIVLREA-------------- 57 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--------Cc-e-EEEEccCCCcccEEEeccC--------------
Confidence 6789999999999999999999999999864321 11 1 222221 12233333211
Q ss_pred hhcCCCCcceEEEEeC---CHHHHHHHHHHhcCCCCceecCCC
Q 016432 284 EHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 284 ~~~~g~GvqHiAf~vd---DI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
...|++|+||.|+ |+++.+++|+++ |+++...|
T Consensus 58 ---~~~~~~hiaf~v~~~~dv~~~~~~l~~~----G~~~~~~~ 93 (122)
T cd07265 58 ---DTAGLDFMGFKVLDDADLEKLEARLQAY----GVAVERIP 93 (122)
T ss_pred ---CCCCeeEEEEEeCCHHHHHHHHHHHHHC----CCcEEEcc
Confidence 2357899999997 899999999999 99988765
No 96
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=98.98 E-value=8.8e-09 Score=85.93 Aligned_cols=108 Identities=12% Similarity=0.008 Sum_probs=76.6
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcC--CEEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--DLRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g--~~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
.++.||.|.|+|++++++||++.|||++..... .+ ...++.+ ...+.|... +
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~~-----~~~~~~~~~~~~~~l~~~--~----------------- 54 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--DG-----ALYLRMDDRAWRIAVHPG--E----------------- 54 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC--CC-----eEEEEccCCceEEEEEeC--C-----------------
Confidence 368999999999999999999999998765421 11 1223333 345555431 0
Q ss_pred CChHHHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCee---ccCceEEEEEEecCCeEEEEee
Q 016432 109 FDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVI---LDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 109 ~~~~~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~---~~~~~~~~~v~~~gg~~~~fve 177 (389)
..+..|++|.|+ |+++.+++|+++|+++...|.. ..+..+...+++|+|..++|+-
T Consensus 55 -------------~~~~~~~~f~v~~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 116 (120)
T cd07252 55 -------------ADDLAYAGWEVADEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFW 116 (120)
T ss_pred -------------CCceeEEEEEECCHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEe
Confidence 125678999997 5999999999999998765421 1122357788999999998875
No 97
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=98.98 E-value=5.1e-09 Score=89.89 Aligned_cols=121 Identities=12% Similarity=0.194 Sum_probs=80.5
Q ss_pred cceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHh
Q 016432 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE 284 (389)
Q Consensus 205 ~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~ 284 (389)
++++|+|+++.|+|++++.+||+++|||++.... + ....+.. +...+.+..+.. ...
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~----------~-~~~~~~~--~g~~l~l~~~~~--~~~-------- 57 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKG----------R-KTAYFDL--NGLWIALNEEKD--IPR-------- 57 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeec----------C-eeEEEec--CCeEEEeeccCC--CCC--------
Confidence 4678999999999999999999999999986421 1 1122222 224444433321 000
Q ss_pred hcCCCCcceEEEEeC--CHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceE
Q 016432 285 HNEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362 (389)
Q Consensus 285 ~~~g~GvqHiAf~vd--DI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~l 362 (389)
...+.|++|+||.++ |+++++++|+++ |++++..| ... . .....++=.|.+|++
T Consensus 58 ~~~~~~~~hiaf~v~~~dv~~~~~~l~~~----G~~i~~~~-~~~--------~-----------~~~~~~~~~DPdGn~ 113 (139)
T PRK04101 58 NEIHQSYTHIAFSIEEEDFDHWYQRLKEN----DVNILPGR-ERD--------E-----------RDKKSIYFTDPDGHK 113 (139)
T ss_pred ccCCCCeeEEEEEecHHHHHHHHHHHHHC----CceEcCCc-ccc--------C-----------CCceEEEEECCCCCE
Confidence 112357899999998 999999999999 99988765 211 0 011334556788888
Q ss_pred EEEeccccCC
Q 016432 363 LQIFTKPVGD 372 (389)
Q Consensus 363 lqift~~~~~ 372 (389)
+.+.+--+-|
T Consensus 114 iEl~~~~~~~ 123 (139)
T PRK04101 114 FEFHTGTLQD 123 (139)
T ss_pred EEEEeCCHHH
Confidence 8887765433
No 98
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.97 E-value=1e-08 Score=85.83 Aligned_cols=119 Identities=10% Similarity=0.066 Sum_probs=77.2
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHH
Q 016432 34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAA 113 (389)
Q Consensus 34 ~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (389)
.+|.|.|+|++++++||.. |||+.......+.+ ..+...++..+.|........ +....
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~~-----~~~~~~~~~~l~l~~~~~~~~---------------~~~~~ 60 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEKA-----ACMVISDNIFVMLLTEDFFQT---------------FTPKP 60 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCCe-----EEEEECCceEEEEEcHHHHhh---------------ccCCC
Confidence 6899999999999999975 99997753221111 222223456776654311000 00000
Q ss_pred HHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 114 CRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 114 ~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
. ....+.+..|+||.|+ |+++++++++++|++++.+|....+ .....+++|+|..++++.
T Consensus 61 ~---~~~~~~~~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~-~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 61 I---ADTKKSTEVLISLSADSREEVDELVEKALAAGGKEFREPQDHGF-MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred c---ccCCCCCeEEEEEeCCCHHHHHHHHHHHHHCCCcccCCcccCCc-eEEEEEECCCCCEEEEEE
Confidence 0 0001234568999998 6999999999999999888876543 345678899999988763
No 99
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=98.96 E-value=1.7e-08 Score=82.78 Aligned_cols=105 Identities=16% Similarity=0.090 Sum_probs=76.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEc-C--CEEEEEEccCCCCCccccccCCCCCCCCCCChH
Q 016432 36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-G--DLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (389)
Q Consensus 36 I~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~-g--~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (389)
..+.|+|++++++||++.|||+..... +. ...++. + +..+.+.... .
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~--~-------------------- 53 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDH----GW----IATFASPQNMTVQVSLATEG--G-------------------- 53 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcC----Cc----eEEEeecCCCCcEEEEecCC--C--------------------
Confidence 468899999999999999999986431 11 222332 2 3555554321 0
Q ss_pred HHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEeec
Q 016432 113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY 178 (389)
Q Consensus 113 ~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve~ 178 (389)
.+....+++|.|+|+++++++++++|+++..+|....+..+...+.+|+|..++++++
T Consensus 54 --------~~~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 54 --------TATVVPDLSIEVDDVDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred --------CCCCCCEEEEEeCCHHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 0113458999999999999999999999988876544555677889999999988863
No 100
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.96 E-value=5.9e-09 Score=85.34 Aligned_cols=95 Identities=23% Similarity=0.286 Sum_probs=69.6
Q ss_pred EEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCc-ceEEEeccCCCCCCCCchHHHHHhhcCCC
Q 016432 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE-MVLLPMNEPVFGTKRKSQIQTYLEHNEGA 289 (389)
Q Consensus 211 Hv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g-~v~l~l~e~~~~~~~~s~i~~fl~~~~g~ 289 (389)
||++.|.|++++++||+++|||++.++... ..+.....+..+++ .+.|.+..+.. ..+. . ...+.
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~----~-~~~~~ 66 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPM------GGGFRWVTVAPPGSPETSLVLAPPAN---PAAM----S-GLQPG 66 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeecc------CCCcEEEEEeCCCCCeeEEEEeCCCC---cccc----c-cccCC
Confidence 899999999999999999999999876431 12344444555554 67777654431 1111 1 12345
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 290 GVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 290 GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
|+.|++|.|+||.+++++|+++ |++++.+|
T Consensus 67 ~~~~~~~~v~di~~~~~~l~~~----g~~~~~~~ 96 (119)
T cd07263 67 GTPGLVLATDDIDATYEELKAR----GVEFSEEP 96 (119)
T ss_pred CceEEEEEehHHHHHHHHHHhC----CCEEeecc
Confidence 7889999999999999999999 99998766
No 101
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.96 E-value=1.4e-08 Score=84.57 Aligned_cols=111 Identities=16% Similarity=0.140 Sum_probs=78.0
Q ss_pred EEEEEEEeCCHHHHHHHHHHh---cCCcEEEEecCCCCceeEEEEEEEc--CCEEEEEEccCCCCCccccccCCCCCCCC
Q 016432 33 FHHVEFWCTDATNTARRFSWG---LGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGNSSASLP 107 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~---lGF~~~~~~~~~~g~r~~~~~~~~~--g~~~i~l~~p~~~~~~~~~~~~~~~~~~~ 107 (389)
++||.+.|+|++++++||++. |||+.+.... . . ...+.. ++..+.+..+.....
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~--~---~~~~~~~~~~~~~~l~~~~~~~~-------------- 59 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P--G---AVGYGKGGGGPDFWVTKPFDGEP-------------- 59 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C--c---eeEeccCCCCceEEEeccccCCC--------------
Confidence 589999999999999999998 6999875531 1 1 122333 356677765321110
Q ss_pred CCChHHHHHHHHhcCCceeEEEEEEcC---HHHHHHHHHHCCCcccCCCeecc---CceEEEEEEecCCeEEEEe
Q 016432 108 TFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILD---NLAVIAEVQLYGDVVLRYV 176 (389)
Q Consensus 108 ~~~~~~~~~~l~~hg~gv~~iaf~V~D---vda~~~~a~a~Ga~~i~~P~~~~---~~~~~~~v~~~gg~~~~fv 176 (389)
....+..||||.|+| +++.+++++++|+++..+|.... +......+++|+|..++++
T Consensus 60 ------------~~~~~~~hi~f~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 60 ------------ATAGNGTHVAFAAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred ------------CCCCCceEEEEECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 011234699999996 88999999999999888776543 2334677889999998876
No 102
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.96 E-value=7.9e-09 Score=91.05 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=78.0
Q ss_pred eEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcC-CcceEEEeccCCCCCCCCchHHHHHhhc
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-DEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~-~g~v~l~l~e~~~~~~~~s~i~~fl~~~ 286 (389)
+|+||++.|+|++++.+||+++|||++..... + ...+.... .....|.+...... .. ...
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---------~-~~~~~~~~~~~~~~l~l~~~~~~--~~-------~~~ 61 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---------D-RVRLEEGGGGPGAVVDVLEEPDQ--PR-------GRP 61 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---------C-EEEEEecCCCCCCEEEEEeCCCC--CC-------Ccc
Confidence 47999999999999999999999999875432 1 11222221 12456666554210 00 011
Q ss_pred CCCCcceEEEEeCC---HHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEE
Q 016432 287 EGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (389)
Q Consensus 287 ~g~GvqHiAf~vdD---I~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~ll 363 (389)
+..|++||||.|+| +++++++|+++ |+++.. | ..+ + ....+|=+|.+|.++
T Consensus 62 ~~~~l~Hiaf~v~d~~dvd~~~~~L~~~----Gv~~~~-~-~~~--------~------------~~~s~yf~DPdG~~i 115 (157)
T cd08347 62 GAGTVHHVAFRVPDDEELEAWKERLEAL----GLPVSG-I-VDR--------F------------YFKSLYFREPGGILF 115 (157)
T ss_pred cCCceEEEEEECCCHHHHHHHHHHHHHC----CCCccc-c-ccc--------c------------cEEEEEEECCCCcEE
Confidence 23579999999998 89999999999 997543 3 111 0 012346677889999
Q ss_pred EEeccc
Q 016432 364 QIFTKP 369 (389)
Q Consensus 364 qift~~ 369 (389)
++++.+
T Consensus 116 El~~~~ 121 (157)
T cd08347 116 EIATDG 121 (157)
T ss_pred EEEECC
Confidence 999865
No 103
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=98.96 E-value=1.4e-08 Score=84.81 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=78.2
Q ss_pred eeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhc
Q 016432 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (389)
Q Consensus 207 ~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~ 286 (389)
++|.|+++.|+|++++++||+++|||++.+... .+ ..++..++..+.+.|....
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--------~~--~~~~~~~~~~~~~~l~~~~---------------- 54 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--------DG--ALYLRMDDRAWRIAVHPGE---------------- 54 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC--------CC--eEEEEccCCceEEEEEeCC----------------
Confidence 368899999999999999999999998854311 11 2334444445566664321
Q ss_pred CCCCcceEEEEeC---CHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEE
Q 016432 287 EGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (389)
Q Consensus 287 ~g~GvqHiAf~vd---DI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~ll 363 (389)
..+..|+||.++ ||++.+++|+++ |+++...| ..-.. .+-. . ..++=.|.+|..+
T Consensus 55 -~~~~~~~~f~v~~~~dl~~~~~~l~~~----Gv~~~~~~-~~~~~---~~~~-----------~--~~~~~~DPdG~~i 112 (120)
T cd07252 55 -ADDLAYAGWEVADEAALDALAARLRAA----GVAVEEGS-AELAA---ERGV-----------E--GLIRFADPDGNRH 112 (120)
T ss_pred -CCceeEEEEEECCHHHHHHHHHHHHHc----CCeEEEcC-HHHHh---hCCC-----------c--EEEEEECCCCCEE
Confidence 246789999997 599999999999 99998765 21100 0000 0 1335567888899
Q ss_pred EEeccc
Q 016432 364 QIFTKP 369 (389)
Q Consensus 364 qift~~ 369 (389)
.+|+-+
T Consensus 113 E~~~~~ 118 (120)
T cd07252 113 ELFWGP 118 (120)
T ss_pred EEEecc
Confidence 888754
No 104
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.96 E-value=1.9e-08 Score=83.46 Aligned_cols=109 Identities=17% Similarity=0.099 Sum_probs=77.2
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHH
Q 016432 34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAA 113 (389)
Q Consensus 34 ~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (389)
-||.|.|+|++++.+||++.|||+.....+ + ........+.+.+.+..+...
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~---------------------- 54 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD---D---YAKFLLEDPRLNFVLNERPGA---------------------- 54 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC---C---eeEEEecCCceEEEEecCCCC----------------------
Confidence 389999999999999999999998765532 1 112222334455555432100
Q ss_pred HHHHHHhcCCceeEEEEEEcC---HHHHHHHHHHCCCcccCCCeeccC--ceEEEEEEecCCeEEEEee
Q 016432 114 CRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDN--LAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 114 ~~~~l~~hg~gv~~iaf~V~D---vda~~~~a~a~Ga~~i~~P~~~~~--~~~~~~v~~~gg~~~~fve 177 (389)
...++.|+||+|+| +++.++++.++|+++..+|..... ......+++|+|..++|+.
T Consensus 55 -------~~~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 55 -------PGGGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred -------CCCCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEE
Confidence 01378899999997 799999999999998776543211 2346788999999999986
No 105
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=98.94 E-value=1.6e-08 Score=83.90 Aligned_cols=108 Identities=20% Similarity=0.113 Sum_probs=76.4
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEc---C-CEEEEEEccCCCCCccccccCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS---G-DLRFVFTAPYSPSISDAADAGNSSAS 105 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~---g-~~~i~l~~p~~~~~~~~~~~~~~~~~ 105 (389)
+++++||.|.|+|++++.+||++.|||++....+ + ...++. + ...+.+..+
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~----------------- 56 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD---D-----RIYLRGLEEFIHHSLVLTKA----------------- 56 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC---C-----eEEEEecCCCceEEEEEeeC-----------------
Confidence 6789999999999999999999999999875421 1 112221 1 123333321
Q ss_pred CCCCChHHHHHHHHhcCCceeEEEEEE---cCHHHHHHHHHHCCCcccCCCee-ccCceEEEEEEecCCeEEEEee
Q 016432 106 LPTFDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVI-LDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 106 ~~~~~~~~~~~~l~~hg~gv~~iaf~V---~Dvda~~~~a~a~Ga~~i~~P~~-~~~~~~~~~v~~~gg~~~~fve 177 (389)
...++.|++|.| +|+++++++++++|+++...|.. .++......+.+|+|..++++.
T Consensus 57 ---------------~~~~~~hi~~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 117 (121)
T cd07266 57 ---------------PVAGLGHIAFRVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYA 117 (121)
T ss_pred ---------------CCCceeEEEEECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEe
Confidence 113688999999 58999999999999998665432 2233346678889999888764
No 106
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.94 E-value=1.1e-08 Score=85.51 Aligned_cols=112 Identities=20% Similarity=0.307 Sum_probs=76.9
Q ss_pred eEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcC
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~ 287 (389)
+|+|+.+.|+|++++.+||+++|||++..... .+ ..+..+...+.+.+.... ..
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--------~~---~~~~~~~~~~~l~~~~~~---------------~~ 54 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--------KG---AYLEAGDLWLCLSVDANV---------------GP 54 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--------Cc---eEEecCCEEEEEecCCCC---------------CC
Confidence 58999999999999999999999999864321 11 122222222333222111 02
Q ss_pred CCCcceEEEEe--CCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEEEE
Q 016432 288 GAGVQHLALVS--EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365 (389)
Q Consensus 288 g~GvqHiAf~v--dDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~llqi 365 (389)
..+++||||.+ +|+++++++|+++ |+++...| ..+ + ..+|=.|.+|+.+.+
T Consensus 55 ~~~~~hi~f~v~~~dl~~~~~~l~~~----G~~~~~~~-~~~--------~--------------~~~~f~DPdG~~ie~ 107 (121)
T cd07244 55 AKDYTHYAFSVSEEDFASLKEKLRQA----GVKEWKEN-TSE--------G--------------DSFYFLDPDGHKLEL 107 (121)
T ss_pred CCCeeeEEEEeCHHHHHHHHHHHHHc----CCcccCCC-CCC--------c--------------cEEEEECCCCCEEEE
Confidence 35689999998 6899999999999 99877655 220 1 134557788999999
Q ss_pred eccccCC
Q 016432 366 FTKPVGD 372 (389)
Q Consensus 366 ft~~~~~ 372 (389)
|+.++-.
T Consensus 108 ~~~~~~~ 114 (121)
T cd07244 108 HVGSLAS 114 (121)
T ss_pred EeCCHHH
Confidence 9877643
No 107
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.93 E-value=2.4e-08 Score=82.20 Aligned_cols=103 Identities=11% Similarity=-0.005 Sum_probs=69.5
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEc--CCEEEEEEccCCCCCccccccCCCCCCCCCC
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~--g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~ 109 (389)
+|+||.|.|+|++++.+||. .|||++..+.+ . ..++.. +...+.+... +
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~--~------------------ 52 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD-----G---LELRTAGNDHRWARLLEG--A------------------ 52 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-----c---eEEEecCCCceEEEeecC--C------------------
Confidence 68999999999999999997 79999875421 1 222222 2233333321 0
Q ss_pred ChHHHHHHHHhcCCceeE--EEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 110 DHAACRSFAASHGLAARS--IAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 110 ~~~~~~~~l~~hg~gv~~--iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
+.++.+ ++|.++|++++++++.++|++++.+|.. .......+++|+|+.++|..
T Consensus 53 ------------~~~~~~~~~~~~~~d~~~~~~~l~~~Gi~~~~~~~~--~~~~~~~~~DP~Gn~iel~~ 108 (112)
T cd08344 53 ------------RKRLAYLSFGIFEDDFAAFARHLEAAGVALAAAPPG--ADPDGVWFRDPDGNLLQVKV 108 (112)
T ss_pred ------------CCceeeEEEEeEhhhHHHHHHHHHHcCCceecCCCc--CCCCEEEEECCCCCEEEEec
Confidence 112333 4555689999999999999998776522 22334677888998887764
No 108
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.93 E-value=1.7e-08 Score=83.55 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=72.1
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHHHH
Q 016432 36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR 115 (389)
Q Consensus 36 I~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (389)
..+.|+|++++++||.+ |||++....+ ....++.|+..+.|.....+.
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~--------~~~~l~~~~~~l~l~~~~~~~----------------------- 52 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND--------NLAYFRLGNCAFYLQDYYVKD----------------------- 52 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC--------CEEEEEcCCEEEEeecCCCcc-----------------------
Confidence 35789999999999986 9999987642 134456788887776432111
Q ss_pred HHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCccc-----CCCeeccCceEEEEEEecCCeEEEEe
Q 016432 116 SFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPS-----SPPVILDNLAVIAEVQLYGDVVLRYV 176 (389)
Q Consensus 116 ~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i-----~~P~~~~~~~~~~~v~~~gg~~~~fv 176 (389)
. .+-.+++|.|+|+++++++++++|+++. .+|...+...+...+++|+|..+.|.
T Consensus 53 -----~-~~~~~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~ 112 (113)
T cd08356 53 -----W-AENSMLHLEVDDLEAYYEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIG 112 (113)
T ss_pred -----c-ccCCEEEEEECCHHHHHHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEee
Confidence 0 1123589999999999999999999753 23333334456777788888877664
No 109
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=98.93 E-value=4.2e-08 Score=83.05 Aligned_cols=113 Identities=18% Similarity=0.169 Sum_probs=79.0
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcC---CEEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG---DLRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g---~~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
+|+||.+.|+|++++++||++.|||++....+. .. ...+..+ ...+.+.....+.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~---~~---~~~~~~~~~~~~~l~l~~~~~~~---------------- 58 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL---GG---LVFLSRDPDEHHQIALITGRPAA---------------- 58 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC---Cc---EEEEEecCCCceEEEEEecCCCC----------------
Confidence 589999999999999999999999998765321 01 2233332 4566665432111
Q ss_pred CChHHHHHHHHhcCCceeEEEEEEcCHH---HHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 109 FDHAACRSFAASHGLAARSIAVEVEDAD---VAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 109 ~~~~~~~~~l~~hg~gv~~iaf~V~Dvd---a~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
. .....++.|+||.|+|++ ++++++.++|++++..+.. +......+++|+|..++|+.
T Consensus 59 ----~-----~~~~~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~~~--~~~~~~~~~DP~G~~ie~~~ 119 (134)
T cd08348 59 ----P-----PPGPAGLNHIAFEVDSLDDLRDLYERLRAAGITPVWPVDH--GNAWSIYFRDPDGNRLELFV 119 (134)
T ss_pred ----C-----CCCCCCceEEEEEeCCHHHHHHHHHHHHHCCCCccccCCC--CceeEEEEECCCCCEEEEEE
Confidence 0 012347889999999765 5889999999987765432 23356678899999999987
No 110
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.92 E-value=8.8e-09 Score=85.27 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=78.5
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC-EEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~-~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
+-||.|.|.|++++++||++.|||++..+. ++. ...++.++ ..+.+..+..... . ....+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~~----~~~l~~~~~~~~~l~~~~~~~~-~-------~~~~~---- 61 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DRR----LAFFWVGGRGMLLLFDPGATST-P-------GGEIP---- 61 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CCc----eEEEEcCCCcEEEEEecCCccc-c-------cCCCC----
Confidence 358999999999999999999999988641 111 23344444 4455544321100 0 00000
Q ss_pred HHHHHHHHhcCCceeEEEEEE--cCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 112 AACRSFAASHGLAARSIAVEV--EDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V--~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
.....++.|+||.| +|++++++++.++|+++...+.. ....+...+++|+|..+++++
T Consensus 62 -------~~~~~~~~~~~~~v~~~dl~~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 62 -------PHGGSGPGHFAFAIPAEELAEWEAHLEAKGVAIESEVQW-PRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred -------CCCCCCccEEEEEcCHHHHHHHHHHHHhcCCceeccccC-CCCeeEEEEECCCCCEEEEec
Confidence 01123788999999 58999999999999988665542 233456778899999998875
No 111
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=98.92 E-value=2.3e-08 Score=86.65 Aligned_cols=86 Identities=19% Similarity=0.316 Sum_probs=62.9
Q ss_pred eeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhc
Q 016432 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (389)
Q Consensus 207 ~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~ 286 (389)
.+|+|+.+.|.|++++.+||+++|||+...... . ...++....+...+.+...
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---------~-~~~~l~~~~~~~~~~l~~~----------------- 55 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---------D-QMAFLRCNSDHHSIAIARG----------------- 55 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---------C-eEEEEECCCCcceEEEccC-----------------
Confidence 479999999999999999999999999753211 1 1233444433444554322
Q ss_pred CCCCcceEEEEeCCHHHHH---HHHHHhcCCCCceecCCC
Q 016432 287 EGAGVQHLALVSEDIFRTL---REMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 287 ~g~GvqHiAf~vdDI~~a~---~~l~~~~~~~Gv~~l~~P 323 (389)
...+++|+||.|+|+.+.. ++|+++ |++++..|
T Consensus 56 ~~~~~~hiaf~v~d~~~l~~~~~~l~~~----Gi~~~~~~ 91 (144)
T cd07239 56 PHPSLNHVAFEMPSIDEVMRGIGRMIDK----GIDILWGP 91 (144)
T ss_pred CCCceEEEEEECCCHHHHHHHHHHHHHc----CCceeeCC
Confidence 1357999999999987765 899999 99988765
No 112
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.91 E-value=4.2e-08 Score=87.80 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=84.5
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCC-CceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLST-GNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~-g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
||||.+.|+|++++.++|.+.|||++.....-+. |+.+. ...+ ++..|+|..+. +.... . .++.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~-li~f--~~~YlEli~i~-~~~~~-~----------~~~~ 65 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANA-LIPF--GDGYLELIAID-PEAPA-P----------DRGR 65 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEE-EEE---SSSEEEEEEES--HHHS-T----------GGGT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEE-EEee--CCceEEEEEeC-Ccccc-c----------cccc
Confidence 7999999999999999998899999887544333 44322 2333 44489888853 22100 0 0000
Q ss_pred HHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccC-ceEEEEEEec------CCeEEEEeecCCCCCC
Q 016432 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN-LAVIAEVQLY------GDVVLRYVSYKDKANH 184 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~-~~~~~~v~~~------gg~~~~fve~~~~~~~ 184 (389)
-.....+ .+++|+..+||+++|+++..+++.+.|... ..+....+ .+++..+... ++..-.||+..
T Consensus 66 ~~~~~~~-~~~~g~~~~~l~t~d~~~~~~~l~~~G~~~-~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~----- 138 (175)
T PF13468_consen 66 WFGLDRL-AGGEGLYGWALRTDDIEAVAARLRAAGLDA-GSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWE----- 138 (175)
T ss_dssp -TTTHHH-HT--EEEEEEEE-S-HHHHHHHHHTTT-EE-EEEEEEEE-EEEEEEEEEE-SS---SS---EEEEES-----
T ss_pred ceechhh-cCCCCeEEEEEecCCHHHHHHHHHhcCCCC-CCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeC-----
Confidence 0000122 267899999999999999999999999861 11111111 1222222211 12233344310
Q ss_pred CCCCCCCccCCCCCCCCccccceeEeEEEEecCCHHHHHHHHHHhh
Q 016432 185 LDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFT 230 (389)
Q Consensus 185 g~~lp~f~~~~~~~~~~~~~~~~~iDHv~~~V~dl~~~~~fY~~~l 230 (389)
+. .+. . ...+.+..+|++|.+.++|.+.+..+|.++|
T Consensus 139 ----~~-~~~--~--~~h~ng~~~i~~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 139 ----TP-HPE--W--ARHPNGALGITRVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp ----S--CCH--H--TTT--TTEEEEEEEEEETTHHHHHHHHHHH-
T ss_pred ----CC-Ccc--c--ccCCCccceEEEEEEEeCCHHHHHHHHHhhC
Confidence 00 000 0 1224478999999999999999999999875
No 113
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.91 E-value=7.4e-09 Score=86.08 Aligned_cols=117 Identities=14% Similarity=-0.011 Sum_probs=72.5
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHHH
Q 016432 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC 114 (389)
Q Consensus 35 HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (389)
||.|.|+|++++++||++.|||++..... . ...+..++..+.+.....+.... ..+ ..
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~-----~---~~~~~~~~~~~~l~~~~~~~~~~---------~~~-----~~ 59 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE-----T---WVDFDFFGHQLVAHLSPNFNADA---------SDN-----AV 59 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC-----C---cccccccCcEEEEEeccCCCccc---------ccC-----CC
Confidence 99999999999999999999999864321 1 11233333344333211110000 000 00
Q ss_pred HHHHHhcCCceeEE--EEEEcCHHHHHHHHHHCCCcccCCCeec----cCceEEEEEEecCCeEEEEee
Q 016432 115 RSFAASHGLAARSI--AVEVEDADVAFNTSVAHGAKPSSPPVIL----DNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 115 ~~~l~~hg~gv~~i--af~V~Dvda~~~~a~a~Ga~~i~~P~~~----~~~~~~~~v~~~gg~~~~fve 177 (389)
.....+..|+ +|.++|+++++++++++|+++..+|... .+..+...+++|+|..++|..
T Consensus 60 ----~~~~~~~~h~~~~~~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 60 ----DGHPVPVPHFGLILSEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred ----CCCccCCceEEEEEeHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 0001133444 5677899999999999999998877542 123466778899999988864
No 114
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=98.91 E-value=2.7e-08 Score=96.51 Aligned_cols=117 Identities=12% Similarity=0.088 Sum_probs=78.8
Q ss_pred CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC-EE-EEEEccCCCCCccccccCCCCCC
Q 016432 28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LR-FVFTAPYSPSISDAADAGNSSAS 105 (389)
Q Consensus 28 ~~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~-~~-i~l~~p~~~~~~~~~~~~~~~~~ 105 (389)
+.+.+|+||.|.|+|++++.+||++.|||++..+...+.+... ....+..++ .. +.
T Consensus 141 ~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------- 198 (303)
T TIGR03211 141 VGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQ-AAAWLSVSNKAHDIA--------------------- 198 (303)
T ss_pred cCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEE-EEEEEEcCCCCcccc---------------------
Confidence 3578999999999999999999999999998655322222210 111222211 10 11
Q ss_pred CCCCChHHHHHHHHhcCCc-eeEEEEEEcC---HHHHHHHHHHCCCcccCCCeecc-CceEEEEEEecCCeEEEEee
Q 016432 106 LPTFDHAACRSFAASHGLA-ARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 106 ~~~~~~~~~~~~l~~hg~g-v~~iaf~V~D---vda~~~~a~a~Ga~~i~~P~~~~-~~~~~~~v~~~gg~~~~fve 177 (389)
+....+.| +.||||+|+| +++++++++++|+++..+|.... .......+++|+|..+++..
T Consensus 199 -----------~~~~~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 199 -----------FVGDPEPGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred -----------eecCCCCCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 01112335 8999999996 66688899999999877775322 12347788999999999874
No 115
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=98.90 E-value=7.4e-09 Score=83.66 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=64.7
Q ss_pred EeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCC
Q 016432 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (389)
Q Consensus 209 iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g 288 (389)
|+|+++.|+|++++++||+++|||+....... .. ...++..+++ ..+.|..... .... ...+
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~-------~~-~~~~~~~~~~-~~i~l~~~~~---~~~~------~~~~ 62 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPF-------LF-PGAWLYAGDG-PQLHLIEEDP---PDAL------PEGP 62 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCC-------CC-CceEEEeCCC-cEEEEEecCC---Cccc------cCCC
Confidence 68999999999999999999999987643221 11 1123333333 2444443321 1110 1134
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 289 ~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.+..|++|.|+||.+++++|+++ |++++.+|
T Consensus 63 ~~~~~~~~~v~d~~~~~~~l~~~----g~~~~~~~ 93 (114)
T cd07245 63 GRDDHIAFRVDDLDAFRARLKAA----GVPYTESD 93 (114)
T ss_pred cccceEEEEeCCHHHHHHHHHHc----CCCccccc
Confidence 57899999999999999999999 99988876
No 116
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=98.89 E-value=1.2e-08 Score=86.84 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=76.7
Q ss_pred EeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCC
Q 016432 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (389)
Q Consensus 209 iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g 288 (389)
|+||++.|+|++++.+||+++|||++.... .+ ...+.. +..++.+..... ... ....
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~---------~~--~~~~~~--~~~~l~l~~~~~--~~~--------~~~~ 57 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG---------EK--TAYFTI--GGTWLALNEEPD--IPR--------NEIR 57 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC---------Cc--cceEee--CceEEEEEccCC--CCc--------CCcC
Confidence 689999999999999999999999975321 11 111222 234555544321 000 1123
Q ss_pred CCcceEEEEeCC--HHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEEEEe
Q 016432 289 AGVQHLALVSED--IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366 (389)
Q Consensus 289 ~GvqHiAf~vdD--I~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~llqif 366 (389)
.|++||||.+++ +++.+++|++. |+++...| ..+.. + ..-++=+|.+|+.+.++
T Consensus 58 ~~~~hiaf~v~~~dld~~~~~l~~~----G~~~~~~~-~~~~~------~-------------~~~~~f~DPdG~~iEl~ 113 (131)
T cd08363 58 QSYTHIAFTIEDSEFDAFYTRLKEA----GVNILPGR-KRDVR------D-------------RKSIYFTDPDGHKLEVH 113 (131)
T ss_pred ccceEEEEEecHHHHHHHHHHHHHc----CCcccCCC-ccccC------c-------------ceEEEEECCCCCEEEEe
Confidence 478999999984 99999999999 99987665 32210 0 01235567788888888
Q ss_pred ccccC
Q 016432 367 TKPVG 371 (389)
Q Consensus 367 t~~~~ 371 (389)
+...-
T Consensus 114 ~~~~~ 118 (131)
T cd08363 114 TGTLA 118 (131)
T ss_pred cCcHH
Confidence 76543
No 117
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.88 E-value=2.3e-08 Score=82.90 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=65.8
Q ss_pred eEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcC--CcceEEEeccCCCCCCCCchHHHHHhh
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN--DEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~--~g~v~l~l~e~~~~~~~~s~i~~fl~~ 285 (389)
+|+|+++.|.|++++++||+++|||+........+ ..+.....+... .+...+.|.+.... ... ..
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~~------~~ 68 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQD----DPGTYHLFFGDGLGSPGTLLTFFEWPDA--GPK------GR 68 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccC----CCceEEEEEecCCCCCCCEEEEEecCCC--CCC------CC
Confidence 47899999999999999999999999876543211 011222333322 23345655443211 110 11
Q ss_pred cCCCCcceEEEEeC---CHHHHHHHHHHhcCCCCceecCCC
Q 016432 286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 286 ~~g~GvqHiAf~vd---DI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
....|+.|+||.|+ |+.+++++++++ |+++..++
T Consensus 69 ~~~~~~~hi~f~v~~~~~~~~~~~~~~~~----g~~~~~~~ 105 (126)
T cd08346 69 RGPGQIHHIAFSVPSEASLDAWRERLRAA----GVPVSGVV 105 (126)
T ss_pred CCCCcEEEEEEEcCCHHHHHHHHHHHHHc----CCcccceE
Confidence 23356899999998 579999999999 99987644
No 118
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.88 E-value=2e-08 Score=84.05 Aligned_cols=85 Identities=20% Similarity=0.342 Sum_probs=62.0
Q ss_pred eeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhc
Q 016432 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (389)
Q Consensus 207 ~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~ 286 (389)
.+++|+++.|.|++++++||+++|||+..... +.. ..+...+ ...|.+.++.
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----------~~~-~~~~~~~-~~~l~~~~~~---------------- 54 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPF----------GPF-AVVKLDN-GVSLDFAQPD---------------- 54 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----------CCE-EEEEcCC-CcEEEEecCC----------------
Confidence 57899999999999999999999999986522 211 1122222 2445444331
Q ss_pred CCCCcceEEEEeC--CHHHHHHHHHHhcCCCCceecCCC
Q 016432 287 EGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 287 ~g~GvqHiAf~vd--DI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
...+..|+||.++ ||++++++|+++ |+++...|
T Consensus 55 ~~~~~~h~a~~v~~~dl~~~~~~l~~~----G~~~~~~~ 89 (123)
T cd08351 55 GEIPPQHYAFLVSEEEFDRIFARIRER----GIDYWADP 89 (123)
T ss_pred CCCCcceEEEEeCHHHHHHHHHHHHHc----CCceecCC
Confidence 1234799999997 699999999999 99998876
No 119
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.88 E-value=3e-08 Score=85.77 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=74.7
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEc-CCE-EEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GDL-RFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 34 ~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~-g~~-~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
.||.|.|+|++++++||++.|||++..+.+ . . ...++. ++. ...+.. .
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~----~--~-~~~l~~~~~~~~h~~~~--~--------------------- 50 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE----D--R-IVFMRCHPNPFHHTFAV--G--------------------- 50 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC----C--E-EEEEEcCCCCCcceeee--c---------------------
Confidence 499999999999999999999999876532 1 1 223332 221 111110 0
Q ss_pred HHHHHHHHhcCCceeEEEEEEcC---HHHHHHHHHHCCCcccCCCeecc-CceEEEEEEecCCeEEEEee
Q 016432 112 AACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V~D---vda~~~~a~a~Ga~~i~~P~~~~-~~~~~~~v~~~gg~~~~fve 177 (389)
.....|+.||||.|+| ++++++++.++|+++...|.... .......+++|+|..++|.-
T Consensus 51 -------~~~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 51 -------PASSSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred -------cCCCCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEe
Confidence 0123489999999985 56789999999999877765422 34456788999999998865
No 120
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.87 E-value=3.6e-08 Score=82.14 Aligned_cols=116 Identities=18% Similarity=0.296 Sum_probs=78.2
Q ss_pred eeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhc
Q 016432 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (389)
Q Consensus 207 ~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~ 286 (389)
++|+|+++.|.|++++.+||+++|||++.... + ....+...+....|.+..... .. ....
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~----------~-~~~~l~~~~~~~~l~l~~~~~---~~------~~~~ 60 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT----------D-STAVLGTGGKRPLLVLEEDPD---AP------PAPP 60 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC----------C-CEEEEecCCCeEEEEEEeCCC---CC------cccC
Confidence 47999999999999999999999999997541 1 123344333345666654431 10 0112
Q ss_pred CCCCcceEEEEeC---CHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEE
Q 016432 287 EGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (389)
Q Consensus 287 ~g~GvqHiAf~vd---DI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~ll 363 (389)
...|++|+||.|+ |+++.+++|+++ |+++..+. ...+ . .-+|=.|.+|.++
T Consensus 61 ~~~~~~hi~f~v~~~~~v~~~~~~l~~~----g~~~~~~~-~~~~-------------------~--~~~~~~DPdG~~i 114 (125)
T cd07255 61 GATGLYHFAILLPSRADLAAALRRLIEL----GIPLVGAS-DHLV-------------------S--EALYLSDPEGNGI 114 (125)
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHc----CCceeccc-cccc-------------------e--eEEEEECCCCCEE
Confidence 3467999999997 599999999999 99775432 2111 0 1235567888899
Q ss_pred EEecc
Q 016432 364 QIFTK 368 (389)
Q Consensus 364 qift~ 368 (389)
++++.
T Consensus 115 Ei~~~ 119 (125)
T cd07255 115 EIYAD 119 (125)
T ss_pred EEEEe
Confidence 88864
No 121
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.87 E-value=4.8e-08 Score=80.59 Aligned_cols=110 Identities=12% Similarity=0.073 Sum_probs=72.8
Q ss_pred ceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhh
Q 016432 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (389)
Q Consensus 206 ~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~ 285 (389)
+++|+|+.+.|.|++++.+||++ |||++..+.. + ..++...+....+.+....
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~--------------- 53 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD---------D--ELYYRGYGTDPFVYVARKG--------------- 53 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC---------C--eEEEecCCCccEEEEcccC---------------
Confidence 57899999999999999999999 9998864411 1 1233332222222221111
Q ss_pred cCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEEEE
Q 016432 286 NEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365 (389)
Q Consensus 286 ~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~llqi 365 (389)
...++.|+||.|+|+++..+.+++. |+.++..+ . .+-+ ...++=.|++|..+.+
T Consensus 54 -~~~~~~~~af~v~~~~~~~~~~~~~----g~~~~~~~-~-------~~~~-------------~~~~~~~DPdG~~iEl 107 (113)
T cd07267 54 -EKARFVGAAFEAASRADLEKAAALP----GASVIDDL-E-------APGG-------------GKRVTLTDPDGFPVEL 107 (113)
T ss_pred -CcCcccEEEEEECCHHHHHHHHHcC----CCeeecCC-C-------CCCC-------------ceEEEEECCCCCEEEE
Confidence 1257899999999999999998888 98877643 2 0000 0133556788888888
Q ss_pred ecc
Q 016432 366 FTK 368 (389)
Q Consensus 366 ft~ 368 (389)
+.-
T Consensus 108 ~~~ 110 (113)
T cd07267 108 VYG 110 (113)
T ss_pred Eec
Confidence 765
No 122
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=98.86 E-value=6e-08 Score=93.57 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=78.0
Q ss_pred CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEc-CCE-EEEEEccCCCCCccccccCCCCCC
Q 016432 28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GDL-RFVFTAPYSPSISDAADAGNSSAS 105 (389)
Q Consensus 28 ~~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~-g~~-~i~l~~p~~~~~~~~~~~~~~~~~ 105 (389)
+.+++++||.|.|+|++++.+||++.|||++..+.....+.. . ...+.. +.. .+.+.
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~------------------- 190 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNL-A-AAWLHRKGGVHDIALT------------------- 190 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcE-E-EEEEecCCCcCceEee-------------------
Confidence 467999999999999999999999999999876542222211 1 122221 211 12211
Q ss_pred CCCCChHHHHHHHHhcCCceeEEEEEEcC---HHHHHHHHHHCCCc--ccCCCeecc-CceEEEEEEecCCeEEEEee
Q 016432 106 LPTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAK--PSSPPVILD-NLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 106 ~~~~~~~~~~~~l~~hg~gv~~iaf~V~D---vda~~~~a~a~Ga~--~i~~P~~~~-~~~~~~~v~~~gg~~~~fve 177 (389)
...+.|++|+||+|+| +++..++|+++|.+ +...|.... +...+..+++|+|..++++.
T Consensus 191 -------------~~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~ 255 (294)
T TIGR02295 191 -------------NGNGPRLHHIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYT 255 (294)
T ss_pred -------------cCCCCceeeEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEe
Confidence 1124589999999998 66678999999987 444453211 12235778899999999876
No 123
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.83 E-value=2.1e-08 Score=96.64 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=89.4
Q ss_pred CCCCCCCCcceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEE--cCCEEEEEEccCCCCCcccc
Q 016432 22 NPKSDRFRVNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR--SGDLRFVFTAPYSPSISDAA 97 (389)
Q Consensus 22 ~~~~~~~~i~~l~HI~~~V~--D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~--~g~~~i~l~~p~~~~~~~~~ 97 (389)
++.+...++..||||...|+ .++.++.||++.|||++....+.++-...+.+..+. .|.++|-||++.+..
T Consensus 157 ~~~~~~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~----- 231 (363)
T COG3185 157 QGASGGVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDK----- 231 (363)
T ss_pred cccccccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCch-----
Confidence 45555667899999998875 677999999999999999876544322122233333 578999999864332
Q ss_pred ccCCCCCCCCCCChHHHHHHHHh-cCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeec
Q 016432 98 DAGNSSASLPTFDHAACRSFAAS-HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL 156 (389)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~-hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~ 156 (389)
+.+.+|+.. ||.||.||||.++|+-++.++++++|++++..|.+.
T Consensus 232 --------------sqi~efl~~y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~tY 277 (363)
T COG3185 232 --------------SQIGEFLREYRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPETY 277 (363)
T ss_pred --------------hHHHHHHHHhCCCcceEEEecccHHHHHHHHHHHcCCccCCCchhH
Confidence 367777764 588999999999999999999999999999888764
No 124
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.81 E-value=4e-08 Score=81.18 Aligned_cols=96 Identities=18% Similarity=0.244 Sum_probs=66.6
Q ss_pred ceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhh
Q 016432 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (389)
Q Consensus 206 ~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~ 285 (389)
+++|+|+.+.|.|++++++||+++|||+....... .+. ..+...+ ..+.+...... ..+ ...
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~-------~~~--~~~~~~~--~~~~l~~~~~~-~~~------~~~ 62 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEE-------VGR--KALRFGS--QKINLHPVGGE-FEP------AAG 62 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeeccccc-------CCc--eEEEeCC--EEEEEecCCCc-cCc------Ccc
Confidence 46799999999999999999999999998754221 121 2233222 34555443210 000 011
Q ss_pred cCCCCcceEEEEeCC-HHHHHHHHHHhcCCCCceecCCC
Q 016432 286 NEGAGVQHLALVSED-IFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 286 ~~g~GvqHiAf~vdD-I~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
..+.|++|+||.+++ +++++++|+++ |++++..|
T Consensus 63 ~~~~~~~hi~~~~~~~~~~~~~~l~~~----G~~~~~~~ 97 (125)
T cd07253 63 SPGPGSDDLCLITEPPIDELVAHLEAH----GVPIEEGP 97 (125)
T ss_pred CCCCCCceEEEEecccHHHHHHHHHHC----CceeecCc
Confidence 245689999999975 99999999999 99998776
No 125
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=98.80 E-value=3.6e-08 Score=82.09 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=74.1
Q ss_pred cceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCC--cceEEEeccCCCCCCCCchHHHH
Q 016432 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTY 282 (389)
Q Consensus 205 ~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~--g~v~l~l~e~~~~~~~~s~i~~f 282 (389)
.+.+|+|+++.|+|++++.+||+++|||++..... + ...+...+ ....+.+..+
T Consensus 3 ~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~---------~--~~~l~~~~~~~~~~~~l~~~------------- 58 (121)
T cd09013 3 DIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG---------Q--SVYLRAWGDYEHHSLKLTES------------- 58 (121)
T ss_pred CccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC---------C--eEEEEeccCCCccEEEEeeC-------------
Confidence 47899999999999999999999999999865421 1 12232211 2233333221
Q ss_pred HhhcCCCCcceEEEEeC---CHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCC
Q 016432 283 LEHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ 359 (389)
Q Consensus 283 l~~~~g~GvqHiAf~vd---DI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~ 359 (389)
...|++|+||.++ |+++..++|+++ |+++...+ .. .+. . .-+|=+|.+
T Consensus 59 ----~~~~~~h~af~v~~~~~v~~~~~~l~~~----G~~~~~~~-~~--------~~~----------~--~~~~~~DPd 109 (121)
T cd09013 59 ----PEAGLGHIAWRASSPEALERRVAALEAS----GLGIGWIE-GD--------PGH----------G--KAYRFRSPD 109 (121)
T ss_pred ----CCCceEEEEEEcCCHHHHHHHHHHHHHc----CCcccccc-CC--------CCC----------c--ceEEEECCC
Confidence 2357999999997 688999999999 99864433 11 010 0 123556778
Q ss_pred ceEEEEecc
Q 016432 360 GTLLQIFTK 368 (389)
Q Consensus 360 g~llqift~ 368 (389)
|..+.+|..
T Consensus 110 G~~iEl~~~ 118 (121)
T cd09013 110 GHPMELYWE 118 (121)
T ss_pred CCEEEEEEe
Confidence 888888764
No 126
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=98.80 E-value=5.3e-08 Score=80.84 Aligned_cols=112 Identities=20% Similarity=0.188 Sum_probs=75.1
Q ss_pred ceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCC--cceEEEeccCCCCCCCCchHHHHH
Q 016432 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTYL 283 (389)
Q Consensus 206 ~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~--g~v~l~l~e~~~~~~~~s~i~~fl 283 (389)
+++|+|+.+.|+|++++.+||+++|||++..... + ..++.... ....+.+..+
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~-------------- 56 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD---------D--RIYLRGLEEFIHHSLVLTKA-------------- 56 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC---------C--eEEEEecCCCceEEEEEeeC--------------
Confidence 6789999999999999999999999999864311 1 12222211 1223333211
Q ss_pred hhcCCCCcceEEEEe---CCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCc
Q 016432 284 EHNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG 360 (389)
Q Consensus 284 ~~~~g~GvqHiAf~v---dDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g 360 (389)
...|+.|++|.| +|+++.+++|+++ |+++...| ..... +. ...+|=.|++|
T Consensus 57 ---~~~~~~hi~~~v~~~~dv~~~~~~l~~~----g~~~~~~~-~~~~~------~~------------~~~~~~~DPdG 110 (121)
T cd07266 57 ---PVAGLGHIAFRVRSEEDLDKAEAFFQEL----GLPTEWVE-AGEEP------GQ------------GRALRVEDPLG 110 (121)
T ss_pred ---CCCceeEEEEECCCHHHHHHHHHHHHHc----CCCccccc-CCcCC------CC------------ccEEEEECCCC
Confidence 124799999999 5899999999999 99988765 22110 10 01245667888
Q ss_pred eEEEEecc
Q 016432 361 TLLQIFTK 368 (389)
Q Consensus 361 ~llqift~ 368 (389)
..+.+|+.
T Consensus 111 ~~ve~~~~ 118 (121)
T cd07266 111 FPIEFYAE 118 (121)
T ss_pred CEEEEEec
Confidence 88888864
No 127
>PRK10291 glyoxalase I; Provisional
Probab=98.80 E-value=3.7e-08 Score=83.14 Aligned_cols=92 Identities=13% Similarity=0.184 Sum_probs=61.7
Q ss_pred EEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCC--cceEEEeccCCCCCCCCchHHHHHhhcCCCC
Q 016432 213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (389)
Q Consensus 213 ~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~--g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~G 290 (389)
++.|.|+++++.||+++|||+.......+ ..+.+..++...+ ....+++..... .. .+ ..|.+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-----~~---~~g~~ 65 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENP-----EYKYSLAFVGYGPETEEAVIELTYNWG--VD-----KY---ELGTA 65 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCC-----CCcEEEEEEccCCCCCcceEEeeecCC--CC-----CC---cCCCC
Confidence 36899999999999999999987654322 1234444443322 122344432210 01 11 13568
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 291 vqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
++|+||.|+|+++++++|+++ |++++..|
T Consensus 66 ~~hlaf~V~d~~~~~~~l~~~----G~~~~~~~ 94 (129)
T PRK10291 66 YGHIALSVDNAAEACEKIRQN----GGNVTREA 94 (129)
T ss_pred eeEEEEEeCCHHHHHHHHHHc----CCccccCC
Confidence 999999999999999999999 99988765
No 128
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=4.3e-08 Score=84.29 Aligned_cols=104 Identities=20% Similarity=0.266 Sum_probs=79.5
Q ss_pred cceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchH-HHHH
Q 016432 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQI-QTYL 283 (389)
Q Consensus 205 ~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i-~~fl 283 (389)
-+.++.|+.+.+++.-+.+.||...||++....... ...|.. .++...++.+++..|.... +.+ +.|+
T Consensus 39 fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~-----~~~~~~-v~~~~~~~~~ELthn~Gte-----s~~~~~~~ 107 (170)
T KOG2944|consen 39 FYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPK-----PEHGVS-VFVFSRNAKLELTHNWGTE-----SPPDQAYL 107 (170)
T ss_pred hhhhhccceeechhhhhHhhhHHHhhcccccccCcc-----CCCCCc-eEEecccCceeeecCCCCC-----CCcchhhc
Confidence 367788889999888888999999999887654332 234433 5666666777777766542 223 5688
Q ss_pred hhcCCC-CcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 284 EHNEGA-GVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 284 ~~~~g~-GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
..+..+ |.+||||.|+||.+|+.+|++. ||+|-..|
T Consensus 108 ngN~~prGfgHIci~V~di~sac~~lkek----GV~f~Kk~ 144 (170)
T KOG2944|consen 108 NGNKEPRGFGHICIEVDDINSACERLKEK----GVRFKKKL 144 (170)
T ss_pred CCCCCCCccceEEEEeCCHHHHHHHHHHh----CceeeecC
Confidence 777667 9999999999999999999999 99988877
No 129
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=98.78 E-value=1.6e-07 Score=79.41 Aligned_cols=117 Identities=21% Similarity=0.250 Sum_probs=76.7
Q ss_pred eEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcC-CcceEEEeccCCCCCCCCchHHHHHhhc
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-DEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~-~g~v~l~l~e~~~~~~~~s~i~~fl~~~ 286 (389)
+|+|+++.|.|++++++||+++|||+...... +.....+..+ .....+.+..... .. . ..
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~---------~~~~~~~~~~~~~~~~l~l~~~~~---~~-~------~~ 61 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGP---------LGGLVFLSRDPDEHHQIALITGRP---AA-P------PP 61 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeecc---------CCcEEEEEecCCCceEEEEEecCC---CC-C------CC
Confidence 58999999999999999999999999764422 1122333332 3345566654431 11 0 11
Q ss_pred CCCCcceEEEEeCCHH---HHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEE
Q 016432 287 EGAGVQHLALVSEDIF---RTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (389)
Q Consensus 287 ~g~GvqHiAf~vdDI~---~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~ll 363 (389)
...|++|+||.|+|+. +.+++|.+. |++++..+ .. +. . ..++=.|.+|..+
T Consensus 62 ~~~~~~h~~f~v~~~~~v~~~~~~l~~~----G~~~~~~~-~~---------~~-----------~-~~~~~~DP~G~~i 115 (134)
T cd08348 62 GPAGLNHIAFEVDSLDDLRDLYERLRAA----GITPVWPV-DH---------GN-----------A-WSIYFRDPDGNRL 115 (134)
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHHC----CCCccccC-CC---------Cc-----------e-eEEEEECCCCCEE
Confidence 3457999999999865 588999999 99877644 11 00 0 1224467888888
Q ss_pred EEeccc
Q 016432 364 QIFTKP 369 (389)
Q Consensus 364 qift~~ 369 (389)
.+++..
T Consensus 116 e~~~~~ 121 (134)
T cd08348 116 ELFVDT 121 (134)
T ss_pred EEEEcC
Confidence 888643
No 130
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=98.77 E-value=1.6e-07 Score=79.47 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=75.4
Q ss_pred eEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccC-ceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCC
Q 016432 210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG-LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (389)
Q Consensus 210 DHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g-~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g 288 (389)
+||++.|.|++++.+||+++|||+.......+ + ....++...+....+.+.... ..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~----------------~~ 57 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-------GVDAAAFLRCDEDHHDLALFPGP----------------ER 57 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-------CceeEEEEEcCCCcceEEEEcCC----------------CC
Confidence 69999999999999999999999986543210 2 123334333333344443221 14
Q ss_pred CCcceEEEEeCCHH---HHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEEEE
Q 016432 289 AGVQHLALVSEDIF---RTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365 (389)
Q Consensus 289 ~GvqHiAf~vdDI~---~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~llqi 365 (389)
.|++|++|.|+|++ +++++|+++ |++++..| .... .+. . ..++=.|.+|+++.|
T Consensus 58 ~~~~hl~~~v~d~~~~~~~~~~l~~~----G~~i~~~~-~~~~------~~~----------~--~~~~~~DPdG~~iei 114 (131)
T cd08343 58 PGLHHVAFEVESLDDILRAADRLAAN----GIQIEFGP-GRHG------PGN----------N--LFLYFRDPDGNRVEL 114 (131)
T ss_pred CCeeEEEEEcCCHHHHHHHHHHHHHc----CCeeEECC-CccC------CCC----------c--EEEEEECCCCCEEEE
Confidence 57999999999875 688999999 99998776 3100 000 0 122445678889988
Q ss_pred eccc
Q 016432 366 FTKP 369 (389)
Q Consensus 366 ft~~ 369 (389)
.+..
T Consensus 115 ~~~~ 118 (131)
T cd08343 115 SAEM 118 (131)
T ss_pred EcCC
Confidence 7654
No 131
>PRK06724 hypothetical protein; Provisional
Probab=98.76 E-value=5.4e-08 Score=82.80 Aligned_cols=86 Identities=10% Similarity=0.163 Sum_probs=60.2
Q ss_pred cceeEeEEEEecCCHHHHHHHHHHhh---CCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHH
Q 016432 205 GIRRLDHAVGNVPELAPAVAYVKSFT---GFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQT 281 (389)
Q Consensus 205 ~~~~iDHv~~~V~dl~~~~~fY~~~l---Gf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~ 281 (389)
+..+|+||++.|.|+++++.||+++| ||+...... . .++..++.|.... ..
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------------~--~~g~~~l~l~~~~----~~----- 57 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------------Y--STGESEIYFKEVD----EE----- 57 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------------e--eCCCeeEEEecCC----cc-----
Confidence 45679999999999999999999977 555432111 0 1123334333221 00
Q ss_pred HHhhcCCCCcceEEEEe---CCHHHHHHHHHHhcCCCCceecCCC
Q 016432 282 YLEHNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 282 fl~~~~g~GvqHiAf~v---dDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
+. ...|+.|+||.| +|+++..++|+++ |++++..|
T Consensus 58 -~~--~~~g~~h~af~v~~~~dvd~~~~~l~~~----G~~~~~~p 95 (128)
T PRK06724 58 -IV--RTLGPRHICYQAINRKVVDEVAEFLSST----KIKIIRGP 95 (128)
T ss_pred -cc--CCCCceeEEEecCChHHHHHHHHHHHHC----CCEEecCC
Confidence 11 135789999998 8899999999999 99998777
No 132
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.76 E-value=1.1e-07 Score=77.93 Aligned_cols=109 Identities=19% Similarity=0.124 Sum_probs=74.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHHHH
Q 016432 36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR 115 (389)
Q Consensus 36 I~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (389)
|.|.|+|++++++||++.|||++....+ . .+.+...++..+.+........ .
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~-----~--~~~~~~~~~~~~~l~~~~~~~~-------------------~-- 53 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP-----T--FALFVLGSGVKLGLWSRHTVEP-------------------A-- 53 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC-----c--eEEEEeCCCcEEEEeeccccCC-------------------C--
Confidence 6799999999999999999999775421 1 1222223556666654321100 0
Q ss_pred HHHHhcCCceeEEEEEEcC---HHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEe
Q 016432 116 SFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV 176 (389)
Q Consensus 116 ~~l~~hg~gv~~iaf~V~D---vda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fv 176 (389)
.....+..|++|.|+| +++++++++++|+++..+|...+.+ ....+++|+|..+++.
T Consensus 54 ---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~v~~~~~~~~~g-~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 54 ---SDATGGGSELAFMVDDGAAVDALYAEWQAKGVKIIQEPTEMDFG-YTFVALDPDGHRLRVF 113 (114)
T ss_pred ---CCCCCCceEEEEEcCCHHHHHHHHHHHHHCCCeEecCccccCCc-cEEEEECCCCCEEEee
Confidence 0012256789999985 8999999999999998888764433 3567888888888764
No 133
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=98.76 E-value=5.8e-08 Score=79.68 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=63.9
Q ss_pred eeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcC-CcceEEEeccCCCCCCCCchHHHHHhh
Q 016432 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-DEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (389)
Q Consensus 207 ~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~-~g~v~l~l~e~~~~~~~~s~i~~fl~~ 285 (389)
++|+|+++.|.|++++.+||+++|||+...... ...++... .+.+.+.+...
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~---------------- 53 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA-----------GSVYLRCSEDDHHSLVLTEG---------------- 53 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC-----------CeEEEecCCCCcEEEEEEeC----------------
Confidence 478999999999999999999999999875421 11233333 34444544322
Q ss_pred cCCCCcceEEEEeC---CHHHHHHHHHHhcCCCCceecCCC
Q 016432 286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 286 ~~g~GvqHiAf~vd---DI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
...++.|+||.|+ |+++..++|+++ |+++...|
T Consensus 54 -~~~~~~h~~~~v~~~~~v~~~~~~l~~~----g~~~~~~~ 89 (117)
T cd07240 54 -DEPGVDALGFEVASEEDLEALAAHLEAA----GVAPEEAS 89 (117)
T ss_pred -CCCCceeEEEEcCCHHHHHHHHHHHHHc----CCceEEcC
Confidence 1246899999997 689999999999 99988876
No 134
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.75 E-value=4.7e-08 Score=84.57 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=72.4
Q ss_pred eEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCc--ceEEEeccCCCCCCCCchHHHHHhhcC
Q 016432 210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE--MVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (389)
Q Consensus 210 DHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g--~v~l~l~e~~~~~~~~s~i~~fl~~~~ 287 (389)
.||++.|+|++++++||+++|||++..+.. + ....+.+... ...+.+.. .+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~---------~-~~~~l~~~~~~~~h~~~~~~-----------------~~ 53 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE---------D-RIVFMRCHPNPFHHTFAVGP-----------------AS 53 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC---------C-EEEEEEcCCCCCcceeeecc-----------------CC
Confidence 499999999999999999999999875432 1 1223333211 22222211 13
Q ss_pred CCCcceEEEEeCCH---HHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEEE
Q 016432 288 GAGVQHLALVSEDI---FRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ 364 (389)
Q Consensus 288 g~GvqHiAf~vdDI---~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~llq 364 (389)
..|++||||.|+|+ +++.++|+++ |+++...| .. . .. ...-.+|=+|.+|.+++
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~----G~~~~~~p-~~-~-------~~----------~~~~~~y~~DPdG~~iE 110 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAH----DVKVVFGP-GR-H-------PP----------SDSIFFYFLDPDGITVE 110 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHC----CCcEEeCC-ce-E-------CC----------CCCEEEEEECCCCCEEE
Confidence 45899999999765 6789999999 99987766 21 0 00 01123466788888888
Q ss_pred Eeccc
Q 016432 365 IFTKP 369 (389)
Q Consensus 365 ift~~ 369 (389)
+...-
T Consensus 111 ~~~~~ 115 (141)
T cd07258 111 YSFGM 115 (141)
T ss_pred EEeCc
Confidence 76643
No 135
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=98.72 E-value=2.9e-07 Score=88.73 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=76.3
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCC--CCceeEEEEEEEcCC--EEEEEEccCCCCCccccccCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLS--TGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSAS 105 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~--~g~r~~~~~~~~~g~--~~i~l~~p~~~~~~~~~~~~~~~~~ 105 (389)
+.+|+||.|.|+|++++++||++.|||++......+ .|.. ....+++.++ ..+.+... +
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~-~~~~~l~~~~~~~~~~l~~~--~-------------- 202 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVT-VRPYFLHCNERHHSLAFAAG--P-------------- 202 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCc-ceEEEEEECCCcceEEEecC--C--------------
Confidence 579999999999999999999999999987653221 1211 0122333322 12332210 0
Q ss_pred CCCCChHHHHHHHHhcCCceeEEEEEEcCHHH---HHHHHHHCCCcccCCCeec-cCceEEEEEEecCCeEEEEee
Q 016432 106 LPTFDHAACRSFAASHGLAARSIAVEVEDADV---AFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 106 ~~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda---~~~~a~a~Ga~~i~~P~~~-~~~~~~~~v~~~gg~~~~fve 177 (389)
.+.+++||||+|+|.++ ++++++++|+ ....|... .+......+++|+|..++|..
T Consensus 203 ---------------~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 203 ---------------SEKRLNHLMLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred ---------------CCCceEEEEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 23479999999998766 8999999999 44444221 123456678899999988864
No 136
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.72 E-value=2.2e-07 Score=76.80 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=61.6
Q ss_pred EEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCC
Q 016432 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (389)
Q Consensus 211 Hv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~G 290 (389)
+..+.|.|++++++||+++|||+..... +. ...+...++.+.|.+..+... .. ...-....+.+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----------~~-~~~~~~~~~~~~l~l~~~~~~----~~-~~~~~~~~~~~ 67 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----------DW-YVSLRSPDGGVELAFMLPGHE----TV-PAAQYQFQGQG 67 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----------Cc-EEEEecCCCceEEEEccCCCC----CC-cchhcccCCce
Confidence 5788999999999999999999987531 11 122333333455655433210 00 00011123455
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 291 vqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
+ |++|.|+||++++++|+++ |++++..|
T Consensus 68 ~-~~~~~v~did~~~~~l~~~----G~~~~~~~ 95 (119)
T cd08359 68 L-ILNFEVDDVDAEYERLKAE----GLPIVLPL 95 (119)
T ss_pred E-EEEEEECCHHHHHHHHHhc----CCCeeecc
Confidence 5 9999999999999999999 99988766
No 137
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.72 E-value=2.4e-07 Score=76.12 Aligned_cols=108 Identities=20% Similarity=0.249 Sum_probs=70.1
Q ss_pred eeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhc
Q 016432 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (389)
Q Consensus 207 ~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~ 286 (389)
.+|+|+++.|.|++++.+||+ .|||+..... .+ ........+...+.+..+.
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~---------------- 52 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEG---------DG--LELRTAGNDHRWARLLEGA---------------- 52 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeec---------Cc--eEEEecCCCceEEEeecCC----------------
Confidence 369999999999999999997 6999986431 11 1111222233444443221
Q ss_pred CCCCcceEEEE--eCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEEE
Q 016432 287 EGAGVQHLALV--SEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ 364 (389)
Q Consensus 287 ~g~GvqHiAf~--vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~llq 364 (389)
+.++.|++|. ++|+++++++|+++ |++++..| ... + . .-++=.|.+|..+.
T Consensus 53 -~~~~~~~~~~~~~~d~~~~~~~l~~~----Gi~~~~~~-~~~--------~------------~-~~~~~~DP~Gn~ie 105 (112)
T cd08344 53 -RKRLAYLSFGIFEDDFAAFARHLEAA----GVALAAAP-PGA--------D------------P-DGVWFRDPDGNLLQ 105 (112)
T ss_pred -CCceeeEEEEeEhhhHHHHHHHHHHc----CCceecCC-CcC--------C------------C-CEEEEECCCCCEEE
Confidence 2346676555 58999999999999 99987654 211 0 0 11355678898999
Q ss_pred Eeccc
Q 016432 365 IFTKP 369 (389)
Q Consensus 365 ift~~ 369 (389)
+++-+
T Consensus 106 l~~~~ 110 (112)
T cd08344 106 VKVAE 110 (112)
T ss_pred EecCC
Confidence 88643
No 138
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=98.69 E-value=1.6e-07 Score=77.66 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=62.0
Q ss_pred ceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCC-cceEEEeccCCCCCCCCchHHHHHh
Q 016432 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND-EMVLLPMNEPVFGTKRKSQIQTYLE 284 (389)
Q Consensus 206 ~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~-g~v~l~l~e~~~~~~~~s~i~~fl~ 284 (389)
+.+|+|+.+.|+|++++.+||+++|||+...... + ..++.... ..+.+.+...
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~--------------- 54 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD---------G--IVYLRATGSEHHILRLRRS--------------- 54 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC---------C--EEEEECCCCccEEEEeccC---------------
Confidence 4689999999999999999999999999753311 1 12333222 2222333211
Q ss_pred hcCCCCcceEEEEe---CCHHHHHHHHHHhcCCCCceecCCC
Q 016432 285 HNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 285 ~~~g~GvqHiAf~v---dDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
..+++.|++|.| +||++.+++|++. |+++...|
T Consensus 55 --~~~~~~~~~~~v~~~~~l~~~~~~l~~~----G~~~~~~~ 90 (120)
T cd08362 55 --DRNRLDVVSFSVASRADVDALARQVAAR----GGTVLSEP 90 (120)
T ss_pred --CCCCCceEEEEeCCHHHHHHHHHHHHHc----CCceecCC
Confidence 124689999999 6799999999999 99988765
No 139
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=98.67 E-value=1.9e-07 Score=74.29 Aligned_cols=90 Identities=24% Similarity=0.300 Sum_probs=68.1
Q ss_pred EEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCC
Q 016432 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (389)
Q Consensus 211 Hv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~G 290 (389)
|+++.|.|++++.+||+++|||+....... .+.....+..+ ...|.|..+... ... .++.+
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-------~~~~~~~~~~~--~~~i~l~~~~~~--~~~--------~~~~~ 61 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-------GGAEFAVLGLG--GTRLELFEGDEP--APA--------PSGGG 61 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc-------CCEEEEEEecC--CceEEEecCCCC--CCc--------ccCCC
Confidence 899999999999999999999998766431 12233444433 567777776521 111 24567
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 291 vqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
++|++|.|+|+.+.+++|++. |+.+..+|
T Consensus 62 ~~~~~~~v~~~~~~~~~l~~~----g~~~~~~~ 90 (112)
T cd06587 62 GVHLAFEVDDVDAAYERLKAA----GVEVLGEP 90 (112)
T ss_pred eeEEEEECCCHHHHHHHHHHc----CCcccCCC
Confidence 999999999999999999999 99988876
No 140
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.67 E-value=2.7e-07 Score=76.45 Aligned_cols=110 Identities=16% Similarity=0.211 Sum_probs=72.9
Q ss_pred EEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCC
Q 016432 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (389)
Q Consensus 211 Hv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~G 290 (389)
|+.+.|+|++++.+||+++|||+...... +...+. ..+..+.+.+..... . ...|
T Consensus 4 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~---------~~~~~~--~~~~~~~~~~~~~~~---~-----------~~~~ 58 (120)
T cd07254 4 HVALNVDDLEASIAFYSKLFGVEPTKVRD---------DYAKFL--LEDPRLNFVLNERPG---A-----------PGGG 58 (120)
T ss_pred EEEEEeCCHHHHHHHHHHHhCCeEecccC---------CeeEEE--ecCCceEEEEecCCC---C-----------CCCC
Confidence 99999999999999999999998753311 111122 222344455443321 0 1147
Q ss_pred cceEEEEeCC---HHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEEEEec
Q 016432 291 VQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT 367 (389)
Q Consensus 291 vqHiAf~vdD---I~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~llqift 367 (389)
+.|+||.|+| +++..++|+++ |+++...| ..-+. .+ ....++=.|.+|..+.+++
T Consensus 59 ~~h~~f~v~~~~dl~~~~~~l~~~----G~~~~~~~-~~~~~-----~~------------~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 59 LNHLGVQVDSAEEVAEAKARAEAA----GLPTFKEE-DTTCC-----YA------------VQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred eeEEEEEeCCHHHHHHHHHHHHHc----CCeEEccC-Ccccc-----cC------------CcceEEEECCCCCEEEEEE
Confidence 8999999988 78899999999 99998876 32110 00 0123456778888888776
No 141
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.66 E-value=3.7e-07 Score=77.65 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=63.8
Q ss_pred eeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEeccccc-----ccccCceEEE-EEc--CCcceEEEeccCCCCCCCCch
Q 016432 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVG-----TSESGLNSVV-LAN--NDEMVLLPMNEPVFGTKRKSQ 278 (389)
Q Consensus 207 ~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~-----~~~~g~~s~~-~~~--~~g~v~l~l~e~~~~~~~~s~ 278 (389)
+++.|+++.|.|++++++||+++|||++.++.+.++.. ...+|-.+.+ +.. ......++|..... ..
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~---~~-- 75 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYG---IG-- 75 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCC---CC--
Confidence 36889999999999999999999999987766543210 1122422222 321 23344565543221 11
Q ss_pred HHHHHhhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 279 IQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 279 i~~fl~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.+ ..|.| |++|.++|+ ++.++|++. |+++...|
T Consensus 76 --~~---~~g~~--~~hlav~~~-d~~~~l~~~----Gv~~~~~~ 108 (127)
T cd08358 76 --DY---ELGND--FLGITIHSK-QAVSNAKKH----NWPVTEVE 108 (127)
T ss_pred --CC---CCCCC--EEEEEEECH-HHHHHHHHC----CCceecCC
Confidence 01 12344 788888888 566999999 99888766
No 142
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.64 E-value=3.2e-07 Score=76.26 Aligned_cols=97 Identities=11% Similarity=0.178 Sum_probs=58.8
Q ss_pred eEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHH--hhcC
Q 016432 210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL--EHNE 287 (389)
Q Consensus 210 DHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl--~~~~ 287 (389)
.|+.+.|.|++++.+||+++|||++...... + ....+.. +...+.+..... ........+. ....
T Consensus 2 ~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~--------~-~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 68 (125)
T cd07264 2 GYTIIYVEDVEKTLEFYERAFGFERRFLHES--------G-DYGELET--GETTLAFASHDL--AESNLKGGFVKADPAQ 68 (125)
T ss_pred ceEEEEEcCHHHHHHHHHHhhCCeEEeecCC--------C-cEEEecC--CcEEEEEEcccc--cccccccCccCCcccc
Confidence 5999999999999999999999998643211 1 1111221 222333221110 0000000000 0001
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 288 GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 288 g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.++.-|++|.|+||++++++++++ |++++.+|
T Consensus 69 ~~~~~~~~~~v~di~~~~~~l~~~----G~~~~~~~ 100 (125)
T cd07264 69 PPAGFEIAFVTDDVAAAFARAVEA----GAVLVSEP 100 (125)
T ss_pred CCCcEEEEEEcCCHHHHHHHHHHc----CCEeccCC
Confidence 233459999999999999999999 99998876
No 143
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.64 E-value=2e-07 Score=76.87 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=73.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHHHH
Q 016432 36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR 115 (389)
Q Consensus 36 I~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (389)
|.|.|+|++++.+||++.|||++..+.. . ....++.++..+.+.+...... ....+.
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~--~-----~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~------- 58 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN--D-----GVAFFQLGGLVLALFPREELAK---------DAGVPV------- 58 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC--C-----ceEEEEcCCeEEEEecchhhhh---------hcCCCC-------
Confidence 7899999999999999999999876511 1 1334455776776654211000 000000
Q ss_pred HHHHhcCCceeEEEEEE---cCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEe
Q 016432 116 SFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV 176 (389)
Q Consensus 116 ~~l~~hg~gv~~iaf~V---~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fv 176 (389)
. ..+.+-.+++|.+ +|++++++++++.|+++..+|...+.......+++|+|..+++.
T Consensus 59 -~--~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~ 119 (121)
T cd07251 59 -P--PPGFSGITLAHNVRSEEEVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVA 119 (121)
T ss_pred -C--CCCccceEEEEEcCCHHHHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEe
Confidence 0 0111233466554 68999999999999999877765443455677888888887764
No 144
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.62 E-value=3.5e-07 Score=75.53 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=75.0
Q ss_pred EeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCC
Q 016432 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (389)
Q Consensus 209 iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g 288 (389)
|-|+.+.|.|++++++||+++|||++.+. . + + ....+...++. .+.+..+.. .. .....+.....
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~-~-~-------~-~~~~l~~~~~~-~~~l~~~~~--~~--~~~~~~~~~~~ 65 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK-E-D-------R-RLAFFWVGGRG-MLLLFDPGA--TS--TPGGEIPPHGG 65 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec-C-C-------C-ceEEEEcCCCc-EEEEEecCC--cc--cccCCCCCCCC
Confidence 35899999999999999999999998753 1 1 1 12233333332 234333221 00 00011222234
Q ss_pred CCcceEEEEe--CCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEEEEe
Q 016432 289 AGVQHLALVS--EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366 (389)
Q Consensus 289 ~GvqHiAf~v--dDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~llqif 366 (389)
.|++|+||.+ +|++++++++.++ |+++..++ .... + -+ -++=.|.+|.+++++
T Consensus 66 ~~~~~~~~~v~~~dl~~~~~~l~~~----g~~~~~~~-~~~~-------~----------~~---~~~~~DP~G~~ie~~ 120 (122)
T cd08354 66 SGPGHFAFAIPAEELAEWEAHLEAK----GVAIESEV-QWPR-------G----------GR---SLYFRDPDGNLLELA 120 (122)
T ss_pred CCccEEEEEcCHHHHHHHHHHHHhc----CCceeccc-cCCC-------C----------ee---EEEEECCCCCEEEEe
Confidence 5799999999 5899999999999 99887654 2110 1 01 134466788899888
Q ss_pred cc
Q 016432 367 TK 368 (389)
Q Consensus 367 t~ 368 (389)
|+
T Consensus 121 ~~ 122 (122)
T cd08354 121 TP 122 (122)
T ss_pred cC
Confidence 75
No 145
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.60 E-value=3.1e-07 Score=75.03 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=58.7
Q ss_pred EEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCC
Q 016432 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (389)
Q Consensus 211 Hv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~G 290 (389)
|+.+.|+|++++++||+++|||+....... + ..+..+ ...+.+..... .. ..+.+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~~--------~---~~~~~~--~~~l~~~~~~~---~~---------~~~~~ 55 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSSK--------E---AYFELA--GLWICLMEEDS---LQ---------GPERT 55 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccCc--------e---eEEEec--CeEEEeccCCC---cC---------CCCCC
Confidence 899999999999999999999998654321 1 111111 34455543321 11 02346
Q ss_pred cceEEEEe--CCHHHHHHHHHHhcCCCCceecCCC
Q 016432 291 VQHLALVS--EDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 291 vqHiAf~v--dDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
++|+||.| +|+++++++|+++ |+++...+
T Consensus 56 ~~hiaf~v~~~d~~~~~~~l~~~----G~~~~~~~ 86 (113)
T cd08345 56 YTHIAFQIQSEEFDEYTERLKAL----GVEMKPER 86 (113)
T ss_pred ccEEEEEcCHHHHHHHHHHHHHc----CCccCCCc
Confidence 89999999 5799999999999 99987543
No 146
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=3.1e-07 Score=79.11 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=80.2
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEec-CCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSD-LSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 30 i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~-~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
+.++.|+.+.+++.-+.+.||...|||+...... ++.+. ...+-.....++|+-|.++++.
T Consensus 40 ytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~----~v~~~~~~~~~ELthn~Gtes~-------------- 101 (170)
T KOG2944|consen 40 YTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGV----SVFVFSRNAKLELTHNWGTESP-------------- 101 (170)
T ss_pred hhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCC----ceEEecccCceeeecCCCCCCC--------------
Confidence 4566666677777666677777667766433221 11221 1222345566777766555421
Q ss_pred CChHHHHHHHH-hcCC-ceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCce-EEEEEEecCCeEEEEee
Q 016432 109 FDHAACRSFAA-SHGL-AARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLA-VIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 109 ~~~~~~~~~l~-~hg~-gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~-~~~~v~~~gg~~~~fve 177 (389)
.-+.|+. .+.+ |.+||||.|+|+++++++++++|+++...|... .. .++++.+|+|.-++++.
T Consensus 102 ----~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dG--k~K~iaF~~dpDgywiei~~ 167 (170)
T KOG2944|consen 102 ----PDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDG--KMKPIAFLHDPDGYWIEIEL 167 (170)
T ss_pred ----cchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCc--cccceeEEECCCCCeEEEee
Confidence 1122332 2334 999999999999999999999999976667652 33 58889999998887765
No 147
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=98.55 E-value=7.6e-07 Score=72.89 Aligned_cols=90 Identities=9% Similarity=-0.022 Sum_probs=61.3
Q ss_pred EeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCC
Q 016432 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (389)
Q Consensus 209 iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g 288 (389)
+.|+++.|+|+++++.||+++|||+..+... + .+ ....+...+ ...+.+..... .. ...
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~------~~-~~~~~~~~~-~~~~~~~~~~~---~~---------~~~ 59 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-G------GG-DYAVFSTGG-GAVGGLMKAPE---PA---------AGS 59 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-C------CC-ceEEEEeCC-ccEEEEecCCC---CC---------CCC
Confidence 4799999999999999999999999865421 0 11 222333222 22222222210 00 023
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 289 ~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.+..|++|.|+||++++++|++. |++++..|
T Consensus 60 ~~~~~~~f~v~di~~~~~~l~~~----g~~~~~~~ 90 (114)
T cd07247 60 PPGWLVYFAVDDVDAAAARVEAA----GGKVLVPP 90 (114)
T ss_pred CCeEEEEEEeCCHHHHHHHHHHC----CCEEEeCC
Confidence 45789999999999999999999 99999877
No 148
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=98.54 E-value=1.1e-06 Score=71.87 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=57.8
Q ss_pred EEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEc-CCcceEEEeccCCCCCCCCchHHHHHhhcCCCC
Q 016432 212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN-NDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (389)
Q Consensus 212 v~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~-~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~G 290 (389)
..+.|+|++++..||+++|||+.... .+ ....+.+ ..+...+.+..... .+.+
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 57 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMD----------HG-WIATFASPQNMTVQVSLATEGG---------------TATV 57 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEc----------CC-ceEEEeecCCCCcEEEEecCCC---------------CCCC
Confidence 46788999999999999999998532 12 1122222 22245555543320 1234
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 291 vqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.+|++|.|+|+++++++|+++ |+++...|
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~~----G~~~~~~~ 86 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVAA----GFAIVYGP 86 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHhc----CCeEecCC
Confidence 689999999999999999999 99988876
No 149
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.54 E-value=2e-06 Score=70.82 Aligned_cols=91 Identities=20% Similarity=0.169 Sum_probs=61.9
Q ss_pred EEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCc-eEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCCc
Q 016432 213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGL-NSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV 291 (389)
Q Consensus 213 ~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~-~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~Gv 291 (389)
.+.|.|++++++||+++|||+.......+ .|. ....+...+ ..+.+..+.+. . . .... .+.+.
T Consensus 6 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~------~~~~~~~~l~~~~--~~~~l~~~~~~--~-~----~~~~-~~~~~ 69 (122)
T cd07246 6 YLIVRDAAAAIDFYKKAFGAEELERMPDD------DGRVMHAELRIGD--SVLMLADEFPE--H-G----SPAS-WGGTP 69 (122)
T ss_pred EEEECCHHHHHHHHHHhhCCEEEEEEeCC------CCCEEEEEEEECC--EEEEEecCCcc--c-C----CCCC-CCCce
Confidence 47778999999999999999988665421 232 222233322 34555544321 0 0 1111 24567
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 292 QHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 292 qHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.|++|.|+|++++++++.++ |++++.+|
T Consensus 70 ~~~~~~v~d~~~~~~~l~~~----G~~~~~~~ 97 (122)
T cd07246 70 VSLHLYVEDVDATFARAVAA----GATSVMPP 97 (122)
T ss_pred EEEEEEeCCHHHHHHHHHHC----CCeEecCc
Confidence 89999999999999999999 99999877
No 150
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.51 E-value=2.1e-07 Score=88.28 Aligned_cols=107 Identities=22% Similarity=0.206 Sum_probs=83.8
Q ss_pred cceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHh
Q 016432 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE 284 (389)
Q Consensus 205 ~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~ 284 (389)
.+.+++||.+.|++-..+..||+..|||++..+-+.+ +...+..+.++++ |.+.+.++++.. ...+....++-
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~le---tg~~~~~s~alr~--g~~vFv~~s~~~--p~~~~~G~~l~ 86 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLE---TGSREWASHALRQ--GKIVFVFNSAYN--PDNSEYGDHLV 86 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhccccc---ccchHHHHHHhhc--CCEEEEEecCCC--CCchhhhhhhh
Confidence 5899999999999999999999999999998654322 2222334455554 667788877763 34445555666
Q ss_pred hcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 285 ~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
+ +|.|+--+||+|+|.+++.+.+.++ |..++.+|
T Consensus 87 ~-HgdgvkdvafeVeD~da~~~~~va~----Ga~v~~~p 120 (381)
T KOG0638|consen 87 K-HGDGVKDVAFEVEDADAIFQEAVAN----GAKVVRPP 120 (381)
T ss_pred h-cccchhceEEEecchHHHHHHHHHc----CCcccCCc
Confidence 6 5788999999999999999999999 99999887
No 151
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=98.46 E-value=1e-06 Score=73.17 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=57.9
Q ss_pred EeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCC
Q 016432 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (389)
Q Consensus 209 iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g 288 (389)
+||+++.|.|++++++||+. |||+....... .....+..++ .++|.|...... .... .. .. ..+
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~---------~~~~~~~~~~-~~~l~l~~~~~~-~~~~--~~-~~-~~~ 64 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD---------EPHVEAVLPG-GVRLAWDTVESI-RSFT--PG-WT-PTG 64 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC---------CCcEEEEeCC-CEEEEEEcccce-eeec--CC-CC-CCC
Confidence 68999999999999999975 99997532210 0111122222 344544322100 0000 00 00 122
Q ss_pred CCcceEEEEeC---CHHHHHHHHHHhcCCCCceecCCC
Q 016432 289 AGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 289 ~GvqHiAf~vd---DI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.+-.|++|.++ ||++++++|+++ |++++..|
T Consensus 65 ~~~~~l~~~~~~~~dvd~~~~~l~~~----G~~~~~~~ 98 (122)
T cd07235 65 GHRIALAFLCETPAEVDALYAELVGA----GYPGHKEP 98 (122)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHHHC----CCCcCCCC
Confidence 34578888875 899999999999 99988766
No 152
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.42 E-value=2e-06 Score=71.45 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=60.8
Q ss_pred EeEEEEecCCHHHHHHHHHHh---hCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhh
Q 016432 209 LDHAVGNVPELAPAVAYVKSF---TGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (389)
Q Consensus 209 iDHv~~~V~dl~~~~~fY~~~---lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~ 285 (389)
|+|+.+.|.|++++++||+++ |||+...+.. .+ ...+...++...+.|..... ... .
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--------~~--~~~~~~~~~~~~~~l~~~~~---~~~-------~ 60 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--------PG--AVGYGKGGGGPDFWVTKPFD---GEP-------A 60 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--------Cc--eeEeccCCCCceEEEecccc---CCC-------C
Confidence 589999999999999999999 6888764320 11 12233333445555544321 100 0
Q ss_pred cCCCCcceEEEEeCC---HHHHHHHHHHhcCCCCceecCCC
Q 016432 286 NEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 286 ~~g~GvqHiAf~vdD---I~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
...+..||||.|+| +++.+++++++ |+.+...|
T Consensus 61 -~~~~~~hi~f~v~~~~~v~~~~~~~~~~----g~~~~~~~ 96 (123)
T cd07262 61 -TAGNGTHVAFAAPSREAVDAFHAAALAA----GGTDEGAP 96 (123)
T ss_pred -CCCCceEEEEECCCHHHHHHHHHHHHHc----CCccCCCC
Confidence 12345799999987 78889999999 99988766
No 153
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.41 E-value=3.2e-06 Score=70.18 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=61.1
Q ss_pred EEecCCHHHHHHHHHHhhCCeEeEEEecccccccccC-ceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCCc
Q 016432 213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG-LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV 291 (389)
Q Consensus 213 ~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g-~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~Gv 291 (389)
.+.|.|++++++||+++|||+.......+ .| +....+..+++.+.+...... .... . ....+.+-
T Consensus 4 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~------~~~~~~~~l~~~~~~~~l~~~~~~-----~~~~-~--~~~~~~~~ 69 (122)
T cd08355 4 TLRYRDAAAAIDWLTDAFGFEERLVVPDD------DGGVAHAELRFGDGGVMVGSVRDD-----YRAS-S--ARAGGAGT 69 (122)
T ss_pred EEEECCHHHHHHHHHHhcCCEEEEEEeCC------CCcEEEEEEEECCEEEEEecCCCc-----cccc-c--cccCCCce
Confidence 57789999999999999999987654321 22 222233444433333222211 1000 0 11234567
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 292 QHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 292 qHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.|++|.|+|+++++++++++ |++++.+|
T Consensus 70 ~~~~~~v~d~d~~~~~l~~~----G~~v~~~~ 97 (122)
T cd08355 70 QGVYVVVDDVDAHYERARAA----GAEILREP 97 (122)
T ss_pred EEEEEEECCHHHHHHHHHHC----CCEEeeCc
Confidence 89999999999999999999 99999776
No 154
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.39 E-value=8.5e-07 Score=73.56 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=57.1
Q ss_pred EEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCC
Q 016432 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (389)
Q Consensus 211 Hv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~G 290 (389)
|+++.|+|++++++||+++|||++..... + ...+...+..+.+.+..... ...... .......+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~---------~--~~~~~~~~~~~~l~~~~~~~---~~~~~~--~~~~~~~~ 65 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE---------T--WVDFDFFGHQLVAHLSPNFN---ADASDN--AVDGHPVP 65 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC---------C--cccccccCcEEEEEeccCCC---cccccC--CCCCCccC
Confidence 99999999999999999999999854211 0 01111122233333322110 000000 00011235
Q ss_pred cceEEE--EeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 291 VQHLAL--VSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 291 vqHiAf--~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
..|+|| .++|+++++++|+++ |++++..|
T Consensus 66 ~~h~~~~~~~~dv~~~~~~l~~~----g~~~~~~p 96 (125)
T cd08357 66 VPHFGLILSEEEFDALAERLEAA----GVEFLIEP 96 (125)
T ss_pred CceEEEEEeHHHHHHHHHHHHHC----CCcEecCc
Confidence 788865 669999999999999 99999876
No 155
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.32 E-value=1.7e-05 Score=66.97 Aligned_cols=112 Identities=16% Similarity=0.089 Sum_probs=74.0
Q ss_pred EEEEe-CCHHHHHHHHHHhcCCcEEEEecCC--------CCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCC
Q 016432 36 VEFWC-TDATNTARRFSWGLGMPIVAKSDLS--------TGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASL 106 (389)
Q Consensus 36 I~~~V-~D~~~a~~fy~~~lGF~~~~~~~~~--------~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~ 106 (389)
..|++ .|+++|++||+++||+++......+ ....+.....++.++..|.+.......
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~-------------- 68 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGF-------------- 68 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCC--------------
Confidence 35677 9999999999999999998765211 111134566677888888887642111
Q ss_pred CCCChHHHHHHHHhcCCceeEEEEEEcC---HHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEE
Q 016432 107 PTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLR 174 (389)
Q Consensus 107 ~~~~~~~~~~~l~~hg~gv~~iaf~V~D---vda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~ 174 (389)
.. ..+ +...+++.|+| ++++++++.+.| +++.+|...+.+.....++++.|+...
T Consensus 69 ------~~-----~~~-~~~~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~ 126 (128)
T cd06588 69 ------PF-----TFG-NGISLSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQ 126 (128)
T ss_pred ------CC-----CCC-CCEEEEEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEE
Confidence 00 012 34468999886 888899977666 787887765444556666666666543
No 156
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.31 E-value=2e-05 Score=67.60 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=80.7
Q ss_pred EEEEeC-CHHHHHHHHHHhcCCcEEEEecCCC---------CceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCC
Q 016432 36 VEFWCT-DATNTARRFSWGLGMPIVAKSDLST---------GNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSAS 105 (389)
Q Consensus 36 I~~~V~-D~~~a~~fy~~~lGF~~~~~~~~~~---------g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~ 105 (389)
-.|.++ |.++|++||+++||++...+....+ +.+ ...+.++.++..|++.......
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~-i~HA~l~i~g~~im~sd~~~~~------------- 69 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGR-IMHAELRIGGSTIMLSDAFPDM------------- 69 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCc-eEEEEEEECCEEEEEecCCCcc-------------
Confidence 357778 9999999999999999887654333 123 3455667888888888653211
Q ss_pred CCCCChHHHHHHHHhc-CCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEE
Q 016432 106 LPTFDHAACRSFAASH-GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRY 175 (389)
Q Consensus 106 ~~~~~~~~~~~~l~~h-g~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~f 175 (389)
. ... +..-..|-+.++|+|+.+++|++.|++++.++...+..-++..++++-|+.=.|
T Consensus 70 -------~-----~~~~~~~s~~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l 128 (136)
T COG2764 70 -------G-----ATEGGGTSLSLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWML 128 (136)
T ss_pred -------C-----cccCCCeeEEEEEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEE
Confidence 0 001 223446888899999999999999999999988766666666666666654433
No 157
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.26 E-value=1.3e-05 Score=66.84 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=58.4
Q ss_pred eEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhh----
Q 016432 210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH---- 285 (389)
Q Consensus 210 DHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~---- 285 (389)
-++++.|.|++++++||+. |||+.......+ .+ ..+... +...+.|.... ..+.+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~------~~--~~~~~~--~~~~l~l~~~~-------~~~~~~~~~~~~ 63 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDE------KA--ACMVIS--DNIFVMLLTED-------FFQTFTPKPIAD 63 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCC------Ce--EEEEEC--CceEEEEEcHH-------HHhhccCCCccc
Confidence 4789999999999999986 999976433211 11 112122 23455554321 01111110
Q ss_pred cCCCCcceEEEEeC---CHHHHHHHHHHhcCCCCceecCCC
Q 016432 286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 286 ~~g~GvqHiAf~vd---DI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
..+.+..|+||.|+ |+++++++++++ |++++.+|
T Consensus 64 ~~~~~~~~l~f~v~~~~~vd~~~~~l~~~----G~~i~~~p 100 (124)
T cd09012 64 TKKSTEVLISLSADSREEVDELVEKALAA----GGKEFREP 100 (124)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHHHHC----CCcccCCc
Confidence 12334679999998 588999999999 99998866
No 158
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.24 E-value=6.7e-06 Score=68.20 Aligned_cols=92 Identities=14% Similarity=0.169 Sum_probs=57.7
Q ss_pred eEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcC
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~ 287 (389)
++.|+.+.|.|++++++||+++|||++...... . .... +.+.|.+............ ...
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~~----------~-~~~~---~~~~l~~~~~~~~~~~~~~------~~~ 61 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFGE----------N-VTFE---GGFALQEGYSWLEGISKAD------IIE 61 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccCc----------e-EEEe---ccceeccchhhhccCCccc------ccc
Confidence 578999999999999999999999998643210 0 1111 1122211100000000000 012
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHhcCCCCc-eecCCC
Q 016432 288 GAGVQHLALVSEDIFRTLREMRKRSGVGGF-EFMPSP 323 (389)
Q Consensus 288 g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv-~~l~~P 323 (389)
+.+-.|++|.|+||++++++|+++ |. +++..|
T Consensus 62 ~~~~~~l~~~v~dvd~~~~~l~~~----g~~~~~~~~ 94 (120)
T cd09011 62 KSNNFELYFEEEDFDAFLDKLKRY----DNIEYVHPI 94 (120)
T ss_pred cCCceEEEEEehhhHHHHHHHHhc----CCcEEecCc
Confidence 334579999999999999999999 85 787766
No 159
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=98.24 E-value=2.3e-05 Score=66.24 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=78.0
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCC---EEEEEEccCCCCCccccccCCCCCCCC
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD---LRFVFTAPYSPSISDAADAGNSSASLP 107 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~---~~i~l~~p~~~~~~~~~~~~~~~~~~~ 107 (389)
..+.|.++.|+|+++|.+||.++||.+.....++. +. ....+..++ .-++...+..+
T Consensus 8 ~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~-~~---~y~~f~~~~~~~gG~l~~~~~~~---------------- 67 (127)
T COG3324 8 GTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMG-EM---RYAVFPADGAGAGGGLMARPGSP---------------- 67 (127)
T ss_pred CccEEEeeecCCHHHHHHHHHHhhCceecccccCC-Cc---eEEEEECCCccccceeccCCcCC----------------
Confidence 45789999999999999999999999988765431 11 233333222 11111111000
Q ss_pred CCChHHHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 108 ~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
.+.+--.+=|.|+|+|++.+|++++|.+++.+++..++...++.+.++.|..+-|.+
T Consensus 68 -------------p~~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s 124 (127)
T COG3324 68 -------------PGGGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWS 124 (127)
T ss_pred -------------CCCCCEEEEEecCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEee
Confidence 112333577889999999999999999999999887666667777777777776654
No 160
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.23 E-value=7.8e-06 Score=67.52 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=51.4
Q ss_pred EEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCCcc
Q 016432 213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQ 292 (389)
Q Consensus 213 ~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~Gvq 292 (389)
.+.|.|++++++||++ |||++.+... . ...+.. +...+.|.... ... ..+-.
T Consensus 6 ~l~v~Dl~~s~~FY~~-LGf~~~~~~~---------~--~~~l~~--~~~~l~l~~~~---~~~-----------~~~~~ 57 (113)
T cd08356 6 FIPAKDFAESKQFYQA-LGFELEWEND---------N--LAYFRL--GNCAFYLQDYY---VKD-----------WAENS 57 (113)
T ss_pred ccccccHHHHHHHHHH-hCCeeEecCC---------C--EEEEEc--CCEEEEeecCC---Ccc-----------cccCC
Confidence 4567899999999987 9999976421 1 133333 33444443221 010 11235
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCCCceecC
Q 016432 293 HLALVSEDIFRTLREMRKRSGVGGFEFMP 321 (389)
Q Consensus 293 HiAf~vdDI~~a~~~l~~~~~~~Gv~~l~ 321 (389)
|++|.|+||++++++|+++ |+++..
T Consensus 58 ~~~~~v~did~~~~~l~~~----G~~~~~ 82 (113)
T cd08356 58 MLHLEVDDLEAYYEHIKAL----GLPKKF 82 (113)
T ss_pred EEEEEECCHHHHHHHHHHc----CCcccc
Confidence 8999999999999999999 997643
No 161
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.22 E-value=9.5e-06 Score=66.38 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=69.4
Q ss_pred EEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCCc
Q 016432 212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV 291 (389)
Q Consensus 212 v~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~Gv 291 (389)
+.+.|.|++++++||+++|||++.... .+ ...+..++ ...+.+-.... .... . ....|.
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~---------~~--~~~~~~~~-~~~~~l~~~~~---~~~~----~--~~~~~~ 60 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS---------PT--FALFVLGS-GVKLGLWSRHT---VEPA----S--DATGGG 60 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC---------Cc--eEEEEeCC-CcEEEEeeccc---cCCC----C--CCCCCc
Confidence 578899999999999999999976421 11 12222222 24455533321 0000 0 123467
Q ss_pred ceEEEEeCC---HHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEEEEec
Q 016432 292 QHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT 367 (389)
Q Consensus 292 qHiAf~vdD---I~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~llqift 367 (389)
+|++|.++| ++++++++++. |+++...| .. .+ .- + .++=+|.+|..+.+|+
T Consensus 61 ~~~~~~v~~~~~~~~~~~~~~~~----g~~v~~~~-~~--------~~-------~g--~---~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 61 SELAFMVDDGAAVDALYAEWQAK----GVKIIQEP-TE--------MD-------FG--Y---TFVALDPDGHRLRVFA 114 (114)
T ss_pred eEEEEEcCCHHHHHHHHHHHHHC----CCeEecCc-cc--------cC-------Cc--c---EEEEECCCCCEEEeeC
Confidence 999999976 88999999999 99988776 32 01 00 1 1244667888888875
No 162
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.13 E-value=4.4e-06 Score=74.69 Aligned_cols=98 Identities=21% Similarity=0.225 Sum_probs=53.9
Q ss_pred EeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHH---hh
Q 016432 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL---EH 285 (389)
Q Consensus 209 iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl---~~ 285 (389)
|||+++.|+|+++++++|++.|||++......+ ..|.....+..+++ .|+|...... .......++. ..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~-----~~GT~N~li~f~~~--YlEli~i~~~-~~~~~~~~~~~~~~~ 72 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHP-----GWGTANALIPFGDG--YLELIAIDPE-APAPDRGRWFGLDRL 72 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-T-----TT-EEEEEEE-SSS--EEEEEEES-H-HHSTGGGT-TTTHHH
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCC-----CCccEEEEEeeCCc--eEEEEEeCCc-ccccccccceechhh
Confidence 799999999999999999889999998654321 23555566655555 5666544211 1111111111 11
Q ss_pred cCCCCcceEEEEeCCHHHHHHHHHHhcCCCCce
Q 016432 286 NEGAGVQHLALVSEDIFRTLREMRKRSGVGGFE 318 (389)
Q Consensus 286 ~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~ 318 (389)
..++|+.++||.|+|+.++.++|++. |++
T Consensus 73 ~~~~g~~~~~l~t~d~~~~~~~l~~~----G~~ 101 (175)
T PF13468_consen 73 AGGEGLYGWALRTDDIEAVAARLRAA----GLD 101 (175)
T ss_dssp HT--EEEEEEEE-S-HHHHHHHHHTT----T-E
T ss_pred cCCCCeEEEEEecCCHHHHHHHHHhc----CCC
Confidence 25789999999999999999999999 986
No 163
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=98.09 E-value=3.7e-05 Score=62.22 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=58.3
Q ss_pred EEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCCcc
Q 016432 213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQ 292 (389)
Q Consensus 213 ~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~Gvq 292 (389)
.+.|+|++++++||+++|||+...... .. ...++.. +...+.|..... .... ...+..
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--------~~-~~~~~~~--~~~~~~l~~~~~---~~~~--------~~~~~~ 60 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--------EP-GYAFLSR--GGAQLMLSEHDG---DEPV--------PLGRGG 60 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--------CC-cEEEEEe--CCEEEEEeccCC---CCCC--------CCCCcE
Confidence 478899999999999999999875432 01 2233333 345566654431 1100 234566
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCCCce-ecCCC
Q 016432 293 HLALVSEDIFRTLREMRKRSGVGGFE-FMPSP 323 (389)
Q Consensus 293 HiAf~vdDI~~a~~~l~~~~~~~Gv~-~l~~P 323 (389)
|++|.++|++++.+++++. |++ ...+|
T Consensus 61 ~~~~~~~~~~~~~~~l~~~----G~~~~~~~~ 88 (112)
T cd08349 61 SVYIEVEDVDALYAELKAK----GADLIVYPP 88 (112)
T ss_pred EEEEEeCCHHHHHHHHHHc----CCcceecCc
Confidence 9999999999999999999 998 44444
No 164
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.07 E-value=8.9e-06 Score=66.84 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=66.4
Q ss_pred EEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCCc
Q 016432 212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV 291 (389)
Q Consensus 212 v~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~Gv 291 (389)
|.+.|.|++++.+||+++|||++... .. .+ ..++.. +...+.+...... .. ... ......+.+-
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~-~~-------~~--~~~~~~--~~~~~~l~~~~~~-~~--~~~-~~~~~~~~~~ 65 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD-SN-------DG--VAFFQL--GGLVLALFPREEL-AK--DAG-VPVPPPGFSG 65 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc-CC-------Cc--eEEEEc--CCeEEEEecchhh-hh--hcC-CCCCCCCccc
Confidence 67899999999999999999998644 10 11 123333 2344544322100 00 000 0000011223
Q ss_pred ceEEE---EeCCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCceeecCCCceEEEEec
Q 016432 292 QHLAL---VSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT 367 (389)
Q Consensus 292 qHiAf---~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~D~~g~llqift 367 (389)
.|++| .++|+.++++++++. |++++.+| ...+. + ....+=+|.+|+++.+++
T Consensus 66 ~~~~~~~~~~~d~~~~~~~l~~~----G~~~~~~~-~~~~~------g-------------~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 66 ITLAHNVRSEEEVDAVLARAAAA----GATIVKPP-QDVFW------G-------------GYSGYFADPDGHLWEVAH 120 (121)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC----CCEEecCC-ccCCC------C-------------ceEEEEECCCCCEEEEee
Confidence 34554 457899999999999 99998766 32110 0 011244667888988876
No 165
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.07 E-value=6.6e-06 Score=70.79 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=74.3
Q ss_pred cccceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHH
Q 016432 203 DYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY 282 (389)
Q Consensus 203 ~~~~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~f 282 (389)
+.++.++|||-+.+++-++...|+ +.|||+...+.... .+.+++ .|.|+|.||... .+.+.+|
T Consensus 4 P~g~~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hrsk---------~v~l~r--QG~I~~vln~ep-----~s~a~~~ 66 (139)
T PF14696_consen 4 PLGLDGFDFVEFAVPDAQALAQLF-TALGFQPVARHRSK---------DVTLYR--QGDINFVLNSEP-----DSFAAEF 66 (139)
T ss_dssp TT-EEEEEEEEEE-SSTTSCHHHH-CCCCEEEECCECCC---------SEEEEE--ETTEEEEEEEES-----TSCHHHH
T ss_pred CCCCCCeEEEEEecCCHHHHHHHH-HHhCcceEEecCCc---------ceEEEE--eCCEEEEEeCCC-----cchHHHH
Confidence 457999999999999876667777 57999987654321 123333 378999998754 4688889
Q ss_pred HhhcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 283 LEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 283 l~~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
... +|+|+-=|||+|+|..+++++..++ |.+.+..|
T Consensus 67 ~~~-HG~sv~aiafrV~Da~~A~~rA~~~----GA~~~~~~ 102 (139)
T PF14696_consen 67 AAQ-HGPSVCAIAFRVDDAAAAYERAVAL----GAEPVQEP 102 (139)
T ss_dssp HHH-HSSEEEEEEEEES-HHHHHHHHHHT----T--EEEEE
T ss_pred HHh-cCCEEEEEEEEeCCHHHHHHHHHHc----CCcCcccC
Confidence 988 5899999999999999999999999 99888766
No 166
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=98.04 E-value=1.3e-05 Score=64.75 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=55.2
Q ss_pred EecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCCcce
Q 016432 214 GNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQH 293 (389)
Q Consensus 214 ~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~GvqH 293 (389)
|.|+|++++++||+++|||++...... ...+.. -.....+...+....+.. ....+..|
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 59 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDPD------YVDFSL-GFRFHDGVIEFLQFPDPP--------------GPPGGGFH 59 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEETS------EEEEEE-TEEEEEEEEEEEEEESSS--------------SSSSSEEE
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCCC------eEEEEe-ccchhhhhHHHccCCccc--------------cCCCceeE
Confidence 578999999999999999999873221 011110 000001111111111110 12457899
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 294 LALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 294 iAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
++|.|+|+++++++++++ |++++..|
T Consensus 60 ~~~~v~dv~~~~~~l~~~----G~~~~~~~ 85 (108)
T PF12681_consen 60 LCFEVEDVDALYERLKEL----GAEIVTEP 85 (108)
T ss_dssp EEEEESHHHHHHHHHHHT----TSEEEEEE
T ss_pred EEEEEcCHHHHHHHHHHC----CCeEeeCC
Confidence 999999999999999999 99998877
No 167
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=97.80 E-value=0.0002 Score=59.32 Aligned_cols=79 Identities=15% Similarity=0.063 Sum_probs=52.6
Q ss_pred EEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCCc
Q 016432 212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV 291 (389)
Q Consensus 212 v~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~Gv 291 (389)
..+.|.|++++++||++ |||+..+... . ....+..++ ..|.|..... .. ....-
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~---------~-~~~~~~~~~--~~l~l~~~~~---~~----------~~~~~ 59 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQA---------A-GYMILRRGD--LELHFFAHPD---LD----------PATSP 59 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCC---------C-CEEEEEcCC--EEEEEEecCc---CC----------CCCCc
Confidence 46788999999999999 9999875421 1 123333332 3444432210 00 11123
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCCCCceec
Q 016432 292 QHLALVSEDIFRTLREMRKRSGVGGFEFM 320 (389)
Q Consensus 292 qHiAf~vdDI~~a~~~l~~~~~~~Gv~~l 320 (389)
-|++|.|+||++++++|+++ |+.+.
T Consensus 60 ~~~~~~v~dvd~~~~~l~~~----G~~~~ 84 (120)
T cd08350 60 FGCCLRLPDVAALHAEFRAA----GLPET 84 (120)
T ss_pred ceEEEEeCCHHHHHHHHHHh----Ccccc
Confidence 58999999999999999999 99754
No 168
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=97.78 E-value=0.00049 Score=56.43 Aligned_cols=118 Identities=16% Similarity=0.065 Sum_probs=69.9
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChH
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (389)
+=|+++-|.|++++.+||.++||.+.-...+ .|+..-++. -.+..-+.- .+++.....-++....+|.
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd-----~wvdfDfyG-HQ~v~Hl~~--q~~~~~~g~V~~~~v~~pH---- 72 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTD-----TWVDFDFYG-HQVVAHLTP--QPDSQGSGKVDGHGVPPPH---- 72 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccc-----eEEEeeecc-cEEEEEecC--CcccccCcccCCCCCCCcc----
Confidence 5699999999999999999999998653322 233333321 123333322 2221100001122222222
Q ss_pred HHHHHHHhcCCceeEEEEEEcCHHHHHHHHHHCCCcccCCCeecc----CceEEEEEEecCCeEEEE
Q 016432 113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILD----NLAVIAEVQLYGDVVLRY 175 (389)
Q Consensus 113 ~~~~~l~~hg~gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~----~~~~~~~v~~~gg~~~~f 175 (389)
..+.|.++|--+..+|+.++|+....+|.... ++.+...+.+|.|..++|
T Consensus 73 -------------fGvVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEf 126 (138)
T COG3565 73 -------------FGVVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEF 126 (138)
T ss_pred -------------ceEEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeee
Confidence 23678899999999999999999888886532 234455555555554444
No 169
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=97.58 E-value=0.0003 Score=57.32 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=30.2
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEec
Q 016432 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSD 63 (389)
Q Consensus 31 ~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~ 63 (389)
++++||.+.|+|++++++||.+.|||+.+....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecc
Confidence 468999999999999999999999999988754
No 170
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=97.51 E-value=0.0012 Score=55.05 Aligned_cols=116 Identities=13% Similarity=0.160 Sum_probs=77.9
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
+.-+|-|-|+|++++.+||+ .|||+.-..--. ..+..++..+++.++|.+..
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~-alGfk~Npq~sd-----e~a~~mi~~~ni~vMLL~~~---------------------- 54 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYT-ALGFKFNPQFSD-----EDAACMIISDNIFVMLLEEA---------------------- 54 (133)
T ss_pred eEEEEecchhhHHHHHHHHH-HhCcccCCCccc-----ccceeEEEeccEEEEEeccH----------------------
Confidence 44578899999999999998 799986543211 12355666788877776531
Q ss_pred HHHHHHHHh-----cCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 112 AACRSFAAS-----HGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 112 ~~~~~~l~~-----hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
..+.|.++ ....=.-|||.+. +||..++++.+.|.++..+|... +..=...+.+++|++.+|+-
T Consensus 55 -~fq~F~~~~i~dt~~s~evli~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~-gfMYg~~fqDpDGh~wE~l~ 126 (133)
T COG3607 55 -RFQTFTKRQIADTTKSREVLISLSAGSREEVDELVDKALEAGGKPANEPQDE-GFMYGRSFQDPDGHVWEFLW 126 (133)
T ss_pred -HhhhhcccccccccCCceEEEEeccCcHHHHHHHHHHHHHcCCCCCCCcccc-ccccceeeeCCCCCeEEEEE
Confidence 22233211 1122234788877 69999999999999998887763 22223456689999888764
No 171
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=97.28 E-value=0.0028 Score=53.60 Aligned_cols=93 Identities=17% Similarity=0.110 Sum_probs=60.2
Q ss_pred ceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCC-cceEEEeccCCCCCCCCchHHHHHh
Q 016432 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND-EMVLLPMNEPVFGTKRKSQIQTYLE 284 (389)
Q Consensus 206 ~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~-g~v~l~l~e~~~~~~~~s~i~~fl~ 284 (389)
...+-|.-+.+.|++++.+||+++||++.....+.. +....+..... +.--+....+.
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~-------~~~y~~f~~~~~~~gG~l~~~~~-------------- 65 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMG-------EMRYAVFPADGAGAGGGLMARPG-------------- 65 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCC-------CceEEEEECCCccccceeccCCc--------------
Confidence 345779999999999999999999999987665421 12222222111 00000000000
Q ss_pred hcCCCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 285 ~~~g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
.-.+.+-.+|=|.|+||++++++..++ |-+++.+|
T Consensus 66 ~~p~~~~~~iy~~v~did~~l~rv~~~----GG~V~~p~ 100 (127)
T COG3324 66 SPPGGGGWVIYFAVDDIDATLERVVAA----GGKVLRPK 100 (127)
T ss_pred CCCCCCCEEEEEecCChHHHHHHHHhc----CCeEEecc
Confidence 001234567788899999999999999 88888876
No 172
>PRK10148 hypothetical protein; Provisional
Probab=97.28 E-value=0.011 Score=51.48 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=69.9
Q ss_pred EEEEeC-CHHHHHHHHHHhcCCcEEEEec---C-----------C-----CCceeEEEEEEEcCCEEEEEEccCCCCCcc
Q 016432 36 VEFWCT-DATNTARRFSWGLGMPIVAKSD---L-----------S-----TGNTVHASYLLRSGDLRFVFTAPYSPSISD 95 (389)
Q Consensus 36 I~~~V~-D~~~a~~fy~~~lGF~~~~~~~---~-----------~-----~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~ 95 (389)
..|..+ |.++|++||+++||.++..... . + ...+ .....++.|+..|.+.... +.
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~Ha~l~i~g~~lm~sD~~-~~--- 79 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTA-IAHANVRIAGSDIMMSDAI-PS--- 79 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCc-EEEEEEEECCEEEEEECCC-CC---
Confidence 355664 8999999999999998865421 1 0 0122 3456667788888776521 11
Q ss_pred ccccCCCCCCCCCCChHHHHHHHHhcCCceeEEEEEEcCHHH--HHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEE
Q 016432 96 AADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADV--AFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVL 173 (389)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~hg~gv~~iaf~V~Dvda--~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~ 173 (389)
. ...+ .-..+++.++|+++ .+-++.+.|++++.++...+...++..|+++=|+.-
T Consensus 80 -----------------~-----~~~~-~~~~l~l~~~d~ee~~~~~~aLa~gg~v~mpl~~~~wg~~~g~v~D~fGi~W 136 (147)
T PRK10148 80 -----------------G-----KAHY-SGFTLVLDTQDVEEGKRWFDNLAANGKIEMAWQETFWAHGFGKVTDKFGVPW 136 (147)
T ss_pred -----------------c-----CCCC-CeEEEEEECCCHHHHHHHHHHhhCCCEEEecchhcchhhccEEEECCCCCEE
Confidence 0 0012 23468888889877 333355799999888877655555666665555544
Q ss_pred EE
Q 016432 174 RY 175 (389)
Q Consensus 174 ~f 175 (389)
.|
T Consensus 137 ~l 138 (147)
T PRK10148 137 MI 138 (147)
T ss_pred EE
Confidence 33
No 173
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.0024 Score=58.94 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=76.9
Q ss_pred cCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEE--cCCEEEEEEccCCCCCccccc
Q 016432 21 QNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR--SGDLRFVFTAPYSPSISDAAD 98 (389)
Q Consensus 21 ~~~~~~~~~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~--~g~~~i~l~~p~~~~~~~~~~ 98 (389)
..|.|++ +-.|.+.|.|++++++||.+.||+++.....-. ...++. -+...++|+....+.
T Consensus 143 ~~p~s~p-----v~~V~l~VgdL~ks~kyw~~~lgM~ilekeek~------t~~~mgYgd~q~~LElt~~~~~i------ 205 (299)
T KOG2943|consen 143 RGPQSDP-----VLQVMLNVGDLQKSIKYWEKLLGMKILEKEEKY------TRARMGYGDEQCVLELTYNYDVI------ 205 (299)
T ss_pred cCCCCCC-----eEEEEEEehhHHHHHHHHHHHhCcchhhhhhhh------hhhhhccCCcceEEEEEeccCcc------
Confidence 3555544 678999999999999999999999988643211 122222 345777777543221
Q ss_pred cCCCCCCCCCCChHHHHHHHHhcCCceeEEEEE--EcCHHHHHHHHHHCCCcccCCCeecc----CceEEEEEEecCCeE
Q 016432 99 AGNSSASLPTFDHAACRSFAASHGLAARSIAVE--VEDADVAFNTSVAHGAKPSSPPVILD----NLAVIAEVQLYGDVV 172 (389)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~hg~gv~~iaf~--V~Dvda~~~~a~a~Ga~~i~~P~~~~----~~~~~~~v~~~gg~~ 172 (389)
.+..|-..|+|. .+|+...-+..+..+-+++.+-+... ....+..+.+|+|+.
T Consensus 206 ---------------------d~~kg~griafaip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDghe 264 (299)
T KOG2943|consen 206 ---------------------DRAKGFGRIAFAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHE 264 (299)
T ss_pred ---------------------cccccceeEEEeccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCce
Confidence 122233345554 55787777777877666555433321 235567777999999
Q ss_pred EEEee
Q 016432 173 LRYVS 177 (389)
Q Consensus 173 ~~fve 177 (389)
+-||+
T Consensus 265 icfVd 269 (299)
T KOG2943|consen 265 ICFVD 269 (299)
T ss_pred EEEec
Confidence 99998
No 174
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=96.97 E-value=0.0066 Score=57.28 Aligned_cols=90 Identities=20% Similarity=0.292 Sum_probs=61.1
Q ss_pred ceeEeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhh
Q 016432 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (389)
Q Consensus 206 ~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~ 285 (389)
-..++-++++|+|+++...||++++|+++..+.+ .++++... +...|.|.+.... ... .
T Consensus 8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~-----------~~v~L~vg-g~~LL~L~q~~~a-~~~-------~- 66 (265)
T COG2514 8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD-----------GSVTLGVG-GTPLLTLEQFPDA-RRP-------P- 66 (265)
T ss_pred CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC-----------ceEEEeeC-CEEEEEEEeCCCC-CCC-------C-
Confidence 4678899999999999999999999999986532 23444433 3344555432211 111 0
Q ss_pred cCCCCcceEEEEeCC---HHHHHHHHHHhcCCCCceec
Q 016432 286 NEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFM 320 (389)
Q Consensus 286 ~~g~GvqHiAf~vdD---I~~a~~~l~~~~~~~Gv~~l 320 (389)
.+..|+=|+||.+++ +-+.+.++... |+.+.
T Consensus 67 ~~~aGLyH~AfLlP~r~~L~~~l~hl~~~----~~~l~ 100 (265)
T COG2514 67 PRAAGLYHTAFLLPTREDLARVLNHLAEE----GIPLV 100 (265)
T ss_pred ccccceeeeeeecCCHHHHHHHHHHHHhc----CCccc
Confidence 245799999999986 55667777777 77554
No 175
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=96.90 E-value=0.0065 Score=59.64 Aligned_cols=104 Identities=11% Similarity=0.006 Sum_probs=68.1
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCCh
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (389)
..-||.+.|+|++++.+||+..|||.+ ...+ . ...+ ...+..++.... +.
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde----~---a~cm--~dtI~vMllt~~--D~------------------ 296 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD----K---LFLL--GKTSLYLQQTKA--EK------------------ 296 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC----c---cccc--cCcEEEEEecCC--CC------------------
Confidence 345999999999999999999999986 3322 1 1222 334444443321 11
Q ss_pred HHHHHHHHhcCCceeEEEEEEc---CHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCeEEEEee
Q 016432 112 AACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V~---Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~~~~fve 177 (389)
+...-.-+|+.++ +||+.+++|+++|.+...+|... +. .-.+.+++|+.-+++-
T Consensus 297 ---------~~~~evLl~Ls~~Sre~VD~lv~~A~aaGG~~~~~~~D~-Gf--~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 297 ---------KNRGTTTLSLELECEHDFVRFLRRWEMLGGELGEQADGH-FP--LRLVFDLDGHIWVVSC 353 (357)
T ss_pred ---------CCcceEEEEeccCCHHHHHHHHHHHHHcCCCCCCCcccc-cC--cceeECCCCCEEEEEE
Confidence 1113344888888 59999999999999876666553 22 3345678888776653
No 176
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=96.76 E-value=0.031 Score=46.89 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=54.3
Q ss_pred Eec-CCHHHHHHHHHHhhCCeEeEEEeccccc----ccccC-ceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcC
Q 016432 214 GNV-PELAPAVAYVKSFTGFHEFAEFTAEDVG----TSESG-LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (389)
Q Consensus 214 ~~V-~dl~~~~~fY~~~lGf~~~~~~~~~d~~----~~~~g-~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~ 287 (389)
+.+ .|.+++++||+++||+++......++.. ....| +....+...+ ..|.+...... ... .
T Consensus 5 L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g--~~l~~~d~~~~---~~~--------~ 71 (128)
T cd06588 5 LWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGG--QRLMASDGGPG---FPF--------T 71 (128)
T ss_pred EeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECC--EEEEEEcCCCC---CCC--------C
Confidence 556 7999999999999999988765432110 01123 2222333322 34555443311 100 1
Q ss_pred CCCcceEEEEeCC---HHHHHHHHHHhcCCCCceecCCC
Q 016432 288 GAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 288 g~GvqHiAf~vdD---I~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
+.+-.++++.|+| +++.+++|.+. | +.+.+|
T Consensus 72 ~~~~~~l~i~~~~~e~v~~~~~~l~~~----g-~~~~~~ 105 (128)
T cd06588 72 FGNGISLSVECDSEEEADRLFEALSEG----G-TVLMPL 105 (128)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHhcC----C-eEeccc
Confidence 2234589999986 77788888777 7 666665
No 177
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=96.67 E-value=0.0069 Score=49.81 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=58.0
Q ss_pred EeEEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCC
Q 016432 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (389)
Q Consensus 209 iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g 288 (389)
+=|+++-|.|++++..||.++||.....+.+. ++-.-.-...+.+.+.-+... .+.+. ++. .+
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd~-----------wvdfDfyGHQ~v~Hl~~q~~~-~~~g~----V~~-~~ 67 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTDT-----------WVDFDFYGHQVVAHLTPQPDS-QGSGK----VDG-HG 67 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccce-----------EEEeeecccEEEEEecCCccc-ccCcc----cCC-CC
Confidence 44999999999999999999999987644221 111111112233333211100 11111 111 22
Q ss_pred CCcceEE--EEeCCHHHHHHHHHHhcCCCCceecCCC
Q 016432 289 AGVQHLA--LVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 289 ~GvqHiA--f~vdDI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
--+-|+. |.++|-.+..++|.++ |+.|.-+|
T Consensus 68 v~~pHfGvVl~~edW~alaerlea~----gi~~~i~P 100 (138)
T COG3565 68 VPPPHFGVVLPVEDWFALAERLEAA----GIPFHIPP 100 (138)
T ss_pred CCCccceEEEEHHHHHHHHHHHHHc----CCCcccCc
Confidence 2256754 6779999999999999 99999888
No 178
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=96.64 E-value=0.002 Score=52.35 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=29.4
Q ss_pred eEeEEEEecCCHHHHHHHHHHhhCCeEeEEEe
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFT 239 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~lGf~~~~~~~ 239 (389)
+++|+++.|+|++++++||+++|||+......
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecc
Confidence 68999999999999999999999999987654
No 179
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=95.57 E-value=0.19 Score=41.90 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=59.0
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCCCChHH
Q 016432 34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAA 113 (389)
Q Consensus 34 ~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (389)
-+-.+.|.|-+..++||++.|||+....... ..+.--+++.-.|+|-+..+..+ ..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEna------~a~lg~~~~~erlvlEESP~~rt------------------r~ 57 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEENA------LAILGDQQKEERLVLEESPSMRT------------------RA 57 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEETT------EEEEE-TT--EEEEEEE--TTT-------------------B-
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeecccc------EEEecCCCCceEEEEecCCcccc------------------cc
Confidence 3567899999999999999999999987642 12222246677888876422110 01
Q ss_pred HHHHHHhcCC-ceeEEEEEEcCHHHHHHHHHHCCCcccCCCeeccCceEEEEEEecCCe
Q 016432 114 CRSFAASHGL-AARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDV 171 (389)
Q Consensus 114 ~~~~l~~hg~-gv~~iaf~V~Dvda~~~~a~a~Ga~~i~~P~~~~~~~~~~~v~~~gg~ 171 (389)
+ .|+ =+..|-+.|++.+.. +.+.++|++. ...-...+++.+-.+.+-|+.
T Consensus 58 V------~G~KKl~~ivIkv~~~~EI-e~LLar~~~~-~~l~kg~~gyAfe~vSPEgd~ 108 (125)
T PF14506_consen 58 V------EGPKKLNRIVIKVPNPKEI-EALLARGAQY-DRLYKGKNGYAFEAVSPEGDR 108 (125)
T ss_dssp -------SSS-SEEEEEEEESSHHHH-HHHHHC-S---SEEEE-SSSEEEEEE-TT--E
T ss_pred c------cCcceeeEEEEEcCCHHHH-HHHHhccccc-ceeEEcCCceEEEEECCCCCE
Confidence 1 232 478899999998776 7788888764 222222334555555433333
No 180
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.26 E-value=0.13 Score=44.10 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=57.4
Q ss_pred EecC-CHHHHHHHHHHhhCCeEeEEEeccccc-c---cccC-ceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcC
Q 016432 214 GNVP-ELAPAVAYVKSFTGFHEFAEFTAEDVG-T---SESG-LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (389)
Q Consensus 214 ~~V~-dl~~~~~fY~~~lGf~~~~~~~~~d~~-~---~~~g-~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~ 287 (389)
+++. +-++|+.||+++||++........+.. . ...| +...-+.-. ...|.+....+. .. .. ..
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~--g~~im~sd~~~~--~~------~~-~~ 74 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG--GSTIMLSDAFPD--MG------AT-EG 74 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC--CEEEEEecCCCc--cC------cc-cC
Confidence 4566 899999999999999987765543310 0 0112 111111111 223344333211 11 11 11
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHhcCCCCceecCCCChhhh
Q 016432 288 GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYY 328 (389)
Q Consensus 288 g~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY 328 (389)
+.--.=|-+.++|+++..+++.+. |++.+.++-++||
T Consensus 75 ~~~s~~l~~~~~d~da~f~~a~~a----Ga~v~mpl~~~fw 111 (136)
T COG2764 75 GGTSLSLDLYVEDVDAVFERAAAA----GATVVMPLEDTFW 111 (136)
T ss_pred CCeeEEEEEEehHHHHHHHHHHhc----CCeEEecchhcCc
Confidence 222466778889999999999999 9887776634444
No 181
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=91.37 E-value=1.5 Score=36.73 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=48.4
Q ss_pred EEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCC-
Q 016432 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGA- 289 (389)
Q Consensus 211 Hv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~- 289 (389)
+=++.|.+.+..++||+++|||++..+-. .+ .++....+.-+|.|-|++. ..+. .-.|+
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEn---------a~--a~lg~~~~~erlvlEESP~---~rtr------~V~G~K 62 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEEN---------AL--AILGDQQKEERLVLEESPS---MRTR------AVEGPK 62 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEET---------TE--EEEE-TT--EEEEEEE--T---TT-B--------SSS-
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeeccc---------cE--EEecCCCCceEEEEecCCc---cccc------cccCcc
Confidence 44788999999999999999999875422 22 3344456677888888862 2221 11233
Q ss_pred CcceEEEEeCCHHHHHHHHHHh
Q 016432 290 GVQHLALVSEDIFRTLREMRKR 311 (389)
Q Consensus 290 GvqHiAf~vdDI~~a~~~l~~~ 311 (389)
-+++|-+.|+|-. -++.|-++
T Consensus 63 Kl~~ivIkv~~~~-EIe~LLar 83 (125)
T PF14506_consen 63 KLNRIVIKVPNPK-EIEALLAR 83 (125)
T ss_dssp SEEEEEEEESSHH-HHHHHHHC
T ss_pred eeeEEEEEcCCHH-HHHHHHhc
Confidence 4999999999853 35556666
No 182
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=88.32 E-value=7.1 Score=32.36 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=49.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEE-EEecCCC-----CceeEEEEEEEcCCEEEEEEccCCCCCccccccCCCCCCCCC
Q 016432 35 HVEFWCTDATNTARRFSWGLGMPIV-AKSDLST-----GNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT 108 (389)
Q Consensus 35 HI~~~V~D~~~a~~fy~~~lGF~~~-~~~~~~~-----g~r~~~~~~~~~g~~~i~l~~p~~~~~~~~~~~~~~~~~~~~ 108 (389)
|+-|. .+.++|+.||.++||-..+ .....++ ..+ .....+..++..|...... +.
T Consensus 6 yL~F~-g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~-v~ha~l~i~g~~lm~~D~~-~~---------------- 66 (116)
T PF06983_consen 6 YLWFN-GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDK-VMHAELTIGGQKLMASDGG-PD---------------- 66 (116)
T ss_dssp EEEES-S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTS-EEEEEEEETTEEEEEEEES-TS----------------
T ss_pred EEEeC-CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCc-EEEEEEEECCeEEEEECCC-CC----------------
Confidence 44443 7899999999999995433 2222211 122 3345567788888766532 11
Q ss_pred CChHHHHHHHHhcCCceeEEEEEEcC---HHHHHHHHHHCCC
Q 016432 109 FDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGA 147 (389)
Q Consensus 109 ~~~~~~~~~l~~hg~gv~~iaf~V~D---vda~~~~a~a~Ga 147 (389)
+ . .+++ ..+++.++| +++.+++|.+.|-
T Consensus 67 ~---~-------~~~~-~sl~i~~~~~ee~~~~f~~Ls~gG~ 97 (116)
T PF06983_consen 67 F---P-------FGNN-ISLCIECDDEEEIDRIFDKLSEGGQ 97 (116)
T ss_dssp --------------TT-EEEEEEESSHHHHHHHHHHHHTTTE
T ss_pred C---C-------CCCc-EEEEEEcCCHHHHHHHHHHHHcCCC
Confidence 0 0 1234 468888886 7778888888775
No 183
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=85.49 E-value=1.9 Score=42.01 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=29.7
Q ss_pred CchHHHHHhhcCCCCcceEEEEe------CCHHHHHHHHHHhcCCCCceec
Q 016432 276 KSQIQTYLEHNEGAGVQHLALVS------EDIFRTLREMRKRSGVGGFEFM 320 (389)
Q Consensus 276 ~s~i~~fl~~~~g~GvqHiAf~v------dDI~~a~~~l~~~~~~~Gv~~l 320 (389)
.|+...++.. .|..++|+...| .||++..+.|+++ |++.-
T Consensus 171 eSe~aAWi~~-~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~----G~~~n 216 (302)
T PF07063_consen 171 ESEYAAWIAA-HGYHINHFTPRVNRLKKFLDIDAVNAFLKER----GIPMN 216 (302)
T ss_dssp H-HHHHHHHH-HTCS-SEEEEETTT-TT-S-HHHHHHHHHHT----T--B-
T ss_pred HhHHHHhhcc-cccccceeeceeecccccccHHHHHHHHHHc----CCCcc
Confidence 4566777777 678899999999 9999999999999 99655
No 184
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=83.32 E-value=5.7 Score=33.49 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=52.1
Q ss_pred EEEEecCCHHHHHHHHHHhhCCeEeEEEecccccccccCceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHh----hc
Q 016432 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE----HN 286 (389)
Q Consensus 211 Hv~~~V~dl~~~~~fY~~~lGf~~~~~~~~~d~~~~~~g~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~----~~ 286 (389)
-|.+-|.|++++.+||.. |||+.-..+.+++. +..+.+ +.+-+.|.+-. ..+.|.. ..
T Consensus 6 FvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~a--------~~mi~~--~ni~vMLL~~~-------~fq~F~~~~i~dt 67 (133)
T COG3607 6 FVNLPVKDLEASKAFYTA-LGFKFNPQFSDEDA--------ACMIIS--DNIFVMLLEEA-------RFQTFTKRQIADT 67 (133)
T ss_pred EEecchhhHHHHHHHHHH-hCcccCCCcccccc--------eeEEEe--ccEEEEEeccH-------Hhhhhcccccccc
Confidence 356666799999999996 99998776654431 222222 22322332221 1111210 01
Q ss_pred CCCCcceEEEEeC---CHHHHHHHHHHhcCCCCceecCCC
Q 016432 287 EGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 287 ~g~GvqHiAf~vd---DI~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
..+.=-=|||.+. ++++.+++..+. |-....+|
T Consensus 68 ~~s~evli~ls~~s~eevd~~v~ka~ea----GGk~~~~~ 103 (133)
T COG3607 68 TKSREVLISLSAGSREEVDELVDKALEA----GGKPANEP 103 (133)
T ss_pred cCCceEEEEeccCcHHHHHHHHHHHHHc----CCCCCCCc
Confidence 1222345777775 488889999999 87776655
No 185
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=82.94 E-value=5.1 Score=39.73 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.3
Q ss_pred eEeEEEEecCCHHHHHHHHHHhhCCeE
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFTGFHE 234 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~lGf~~ 234 (389)
..-||++.|.|++++.+||+.+|||..
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~ 273 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC 273 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC
Confidence 455999999999999999999998885
No 186
>PRK10148 hypothetical protein; Provisional
Probab=81.98 E-value=23 Score=30.52 Aligned_cols=25 Identities=20% Similarity=0.172 Sum_probs=20.1
Q ss_pred Eec-CCHHHHHHHHHHhhCCeEeEEE
Q 016432 214 GNV-PELAPAVAYVKSFTGFHEFAEF 238 (389)
Q Consensus 214 ~~V-~dl~~~~~fY~~~lGf~~~~~~ 238 (389)
+++ .+.++|++||+++||.+.....
T Consensus 7 L~f~g~a~eAi~FY~~~Fgae~~~~~ 32 (147)
T PRK10148 7 LSFAGNCADAIAYYQQTLGAELLYKI 32 (147)
T ss_pred EEeCCCHHHHHHHHHHHhCCEEEEEE
Confidence 444 4899999999999999876543
No 187
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=76.60 E-value=3.9 Score=34.40 Aligned_cols=41 Identities=27% Similarity=0.557 Sum_probs=32.1
Q ss_pred CCCcceEEEEeCC--HHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhh
Q 016432 288 GAGVQHLALVSED--IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRA 335 (389)
Q Consensus 288 g~GvqHiAf~vdD--I~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~ 335 (389)
.+-+=|+||+-.| |+..++++- .++.+..| ++||..+..-+
T Consensus 18 nE~~VHlAFRPSN~Dif~Lv~~CP------~lk~iqiP-~SY~~t~Sksi 60 (131)
T PF08004_consen 18 NEEIVHLAFRPSNKDIFSLVERCP------NLKAIQIP-PSYYKTLSKSI 60 (131)
T ss_pred CceEEEEEecCcchHHHHHHHhCC------CCeEEeCC-hHHHHHHhHHH
Confidence 4558999999874 777777764 45889999 99999987643
No 188
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=73.82 E-value=24 Score=29.12 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHhhCCeEeEEEe-cccccccccC-ceEEEEEcCCcceEEEeccCCCCCCCCchHHHHHhhcCCCCcceE
Q 016432 217 PELAPAVAYVKSFTGFHEFAEFT-AEDVGTSESG-LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHL 294 (389)
Q Consensus 217 ~dl~~~~~fY~~~lGf~~~~~~~-~~d~~~~~~g-~~s~~~~~~~g~v~l~l~e~~~~~~~~s~i~~fl~~~~g~GvqHi 294 (389)
.+.++|++||+++||-.....+. .++......+ +....+.. +..+|......+. +. .+++ -.+
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i--~g~~lm~~D~~~~---------~~---~~~~-~sl 75 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTI--GGQKLMASDGGPD---------FP---FGNN-ISL 75 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEE--TTEEEEEEEESTS----------------TT-EEE
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEE--CCeEEEEECCCCC---------CC---CCCc-EEE
Confidence 68999999999999954332222 1111001223 11112222 2233333222110 11 1222 678
Q ss_pred EEEeCC---HHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhC
Q 016432 295 ALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG 336 (389)
Q Consensus 295 Af~vdD---I~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~ 336 (389)
++.++| +.+..++|.+- |- | .++|..+..|+|
T Consensus 76 ~i~~~~~ee~~~~f~~Ls~g----G~-----~-~~~~G~v~DkFG 110 (116)
T PF06983_consen 76 CIECDDEEEIDRIFDKLSEG----GQ-----W-FSRYGWVTDKFG 110 (116)
T ss_dssp EEEESSHHHHHHHHHHHHTT----TE-----T-CCEEEEEE-TTS
T ss_pred EEEcCCHHHHHHHHHHHHcC----CC-----c-cceeEEEEeCCC
Confidence 888888 45577778777 65 4 568877777776
No 189
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=46.94 E-value=8.8 Score=31.18 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=10.4
Q ss_pred eEeEEEEecCCHHHHHHHHHHhhC
Q 016432 208 RLDHAVGNVPELAPAVAYVKSFTG 231 (389)
Q Consensus 208 ~iDHv~~~V~dl~~~~~fY~~~lG 231 (389)
.++-+.+||+| +++..||+++||
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---
T ss_pred EEEEEEEeCCC-hhHHHHHHhccc
Confidence 36678999999 889999999886
No 190
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.30 E-value=53 Score=23.07 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=24.4
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCCCCceec
Q 016432 289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFM 320 (389)
Q Consensus 289 ~GvqHiAf~vdDI~~a~~~l~~~~~~~Gv~~l 320 (389)
.|-..+.|.+++..++.+.|+++ |++++
T Consensus 38 ~~~~~v~~~ve~~~~~~~~L~~~----G~~v~ 65 (65)
T cd04882 38 GGKALLIFRTEDIEKAIEVLQER----GVELV 65 (65)
T ss_pred CCeEEEEEEeCCHHHHHHHHHHC----CceEC
Confidence 35688999999999999999999 98764
No 191
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=37.67 E-value=66 Score=31.45 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCceeEEEEEE------cCHHHHHHHHHHCCCccc
Q 016432 112 AACRSFAASHGLAARSIAVEV------EDADVAFNTSVAHGAKPS 150 (389)
Q Consensus 112 ~~~~~~l~~hg~gv~~iaf~V------~Dvda~~~~a~a~Ga~~i 150 (389)
+....++..||..+.|+..+| .|+++.-+.++++|.++.
T Consensus 172 Se~aAWi~~~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 172 SEYAAWIAAHGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp -HHHHHHHHHTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred hHHHHhhcccccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 456677778999999999999 999999999999999887
No 192
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.96 E-value=67 Score=22.52 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=22.8
Q ss_pred ceeEEEEEEcCHHHHHHHHHHCCCcc
Q 016432 124 AARSIAVEVEDADVAFNTSVAHGAKP 149 (389)
Q Consensus 124 gv~~iaf~V~Dvda~~~~a~a~Ga~~ 149 (389)
+-..+.|++++.+.+.+.++++|.++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45678999999999999999999865
No 193
>PF15067 FAM124: FAM124 family
Probab=35.90 E-value=3.6e+02 Score=25.31 Aligned_cols=66 Identities=14% Similarity=0.239 Sum_probs=40.2
Q ss_pred cccccCCCCCCCCcceEE------EEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEc
Q 016432 17 NFVRQNPKSDRFRVNRFH------HVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTA 87 (389)
Q Consensus 17 ~~~~~~~~~~~~~i~~l~------HI~~~V~--D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~ 87 (389)
.|++..|+.+--.+..+| -+.++|+ |.+.+++||.-.|+=++..... |- --..++.+.+..|.|.-
T Consensus 107 dfysl~~~~PlWavr~VH~G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~---~F--C~F~lys~~~~~iQlsL 180 (236)
T PF15067_consen 107 DFYSLDPGMPLWAVRQVHYGKEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE---DF--CFFTLYSQPGLDIQLSL 180 (236)
T ss_pred cceecCCCCceeEEeeeeccccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC---Cc--EEEEEecCCCeEEEEEe
Confidence 455555543332333333 3678888 9999999999999988765432 22 12445556666555543
No 194
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=31.56 E-value=3.9e+02 Score=24.06 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=41.2
Q ss_pred CCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEc
Q 016432 22 NPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTA 87 (389)
Q Consensus 22 ~~~~~~~~i~~l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~ 87 (389)
+|+-+... .-..=+++.|.|..+++.-+. .|||..++.-. +.-..++.|++.+.|..
T Consensus 68 gp~ld~~~-k~r~E~E~~v~D~~~~~~il~-~LGF~~~~~Vk-------K~R~iY~~~~~~i~lD~ 124 (178)
T COG1437 68 GPKLDRES-KTREEIEIEVSDVEKALEILK-RLGFKEVAVVK-------KTREIYKVGNVTIELDA 124 (178)
T ss_pred cccccccc-cceeeEEEEeCCHHHHHHHHH-HcCCceeeEEE-------EEEEEEeeCCEEEEEec
Confidence 45544433 445668999999999999887 79999988642 33455677888888875
No 195
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=31.10 E-value=43 Score=28.08 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.1
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCCCceecCC
Q 016432 293 HLALVSEDIFRTLREMRKRSGVGGFEFMPS 322 (389)
Q Consensus 293 HiAf~vdDI~~a~~~l~~~~~~~Gv~~l~~ 322 (389)
-+-++|+|++++.+.|++. |+.++..
T Consensus 111 lli~r~ed~d~~~~aLed~----gi~~~~~ 136 (142)
T COG4747 111 LLIVRVEDIDRAIKALEDA----GIKLIGM 136 (142)
T ss_pred EEEEEhhHHHHHHHHHHHc----CCeecCh
Confidence 4678899999999999999 9999864
No 196
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.66 E-value=89 Score=22.53 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=24.2
Q ss_pred CCcceEEEEeC--CHHHHHHHHHHhcCCCCceecCC
Q 016432 289 AGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPS 322 (389)
Q Consensus 289 ~GvqHiAf~vd--DI~~a~~~l~~~~~~~Gv~~l~~ 322 (389)
.+...+.|+++ |..++.+.|+++ |+++.++
T Consensus 40 ~~~~~v~i~v~~~~~~~~~~~L~~~----G~~v~~~ 71 (72)
T cd04883 40 EDNKILVFRVQTMNPRPIIEDLRRA----GYEVLWP 71 (72)
T ss_pred CCeEEEEEEEecCCHHHHHHHHHHC----CCeeeCC
Confidence 45666777775 888999999999 9998874
No 197
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.61 E-value=1.1e+02 Score=21.99 Aligned_cols=28 Identities=7% Similarity=0.041 Sum_probs=21.5
Q ss_pred ceeEEEEEEc--CHHHHHHHHHHCCCcccC
Q 016432 124 AARSIAVEVE--DADVAFNTSVAHGAKPSS 151 (389)
Q Consensus 124 gv~~iaf~V~--Dvda~~~~a~a~Ga~~i~ 151 (389)
+...+.|+++ |.+.+.+.+.++|.++..
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 4445667765 888999999999998754
No 198
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=28.55 E-value=28 Score=28.29 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=10.3
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcC
Q 016432 32 RFHHVEFWCTDATNTARRFSWGLG 55 (389)
Q Consensus 32 ~l~HI~~~V~D~~~a~~fy~~~lG 55 (389)
.++-|.+.|+| +++.+||.+.||
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---
T ss_pred EEEEEEEeCCC-hhHHHHHHhccc
Confidence 36779999999 779999999775
No 199
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=26.23 E-value=2e+02 Score=25.26 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCCCceecCCCChhhhHhHhhhhCCCCChhhHHHHHHcCcee-ecCCCceEEEEeccccC
Q 016432 303 RTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLV-DRDDQGTLLQIFTKPVG 371 (389)
Q Consensus 303 ~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~-D~D~~g~llqift~~~~ 371 (389)
+-+.++|-+ | +=-..||.-=-+++.+.++ +.++.+++|++.+++. ..|++|.++.|=+.-.-
T Consensus 81 A~YN~~RF~----~-eRR~~~~~l~~dElA~sF~--l~~e~i~qLr~~kiltVh~De~G~Ii~V~~~~~~ 143 (153)
T PRK14584 81 AKYNQVRFQ----V-ERRGHRPDLDDDELASSFA--LSPELIAQLKSGSCLTLYNDEHGHIIDVKEGLQL 143 (153)
T ss_pred HHHHHHHhc----c-cccCCCCCCChHHHHHHcC--CCHHHHHHHHhCCeEEEEECCCCCEEEeecCCCC
Confidence 345555555 5 3333341333344666677 8899999999999997 78999999988554433
No 200
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=25.63 E-value=2.5e+02 Score=26.16 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=56.6
Q ss_pred eEEEeccCCCCCCCCchHHHHHhhcCCCCcceEEEEeC---CHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhC--
Q 016432 262 VLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG-- 336 (389)
Q Consensus 262 v~l~l~e~~~~~~~~s~i~~fl~~~~g~GvqHiAf~vd---DI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~-- 336 (389)
++|.+..|. ..+..|.+ .|..-|.|.++ ++.++++.+|+.++.-|+.+-+.-|-+.|+.+-..++
T Consensus 66 vHLMV~~p~------~~i~~fa~----agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~V 135 (220)
T COG0036 66 VHLMVENPD------RYIEAFAK----AGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLV 135 (220)
T ss_pred EEEecCCHH------HHHHHHHH----hCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEE
Confidence 455555443 24555554 46788888876 6899999999986666777777655788877666543
Q ss_pred -----------CCCChhhHHHHHHcCceee
Q 016432 337 -----------DVLTDEQIKQCEELGVLVD 355 (389)
Q Consensus 337 -----------~~~~~~~~~~l~~~~IL~D 355 (389)
....++.+++++++.=++|
T Consensus 136 llMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~ 165 (220)
T COG0036 136 LLMSVNPGFGGQKFIPEVLEKIRELRAMID 165 (220)
T ss_pred EEEeECCCCcccccCHHHHHHHHHHHHHhc
Confidence 2345677777777665555
No 201
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=23.57 E-value=70 Score=26.85 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.2
Q ss_pred EEEEEcCHHHHHHHHHHCCCcccCC
Q 016432 128 IAVEVEDADVAFNTSVAHGAKPSSP 152 (389)
Q Consensus 128 iaf~V~Dvda~~~~a~a~Ga~~i~~ 152 (389)
+-++|+|+|++.+.+..+|++++.+
T Consensus 112 li~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 112 LIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred EEEEhhHHHHHHHHHHHcCCeecCh
Confidence 7789999999999999999987643
No 202
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=23.16 E-value=24 Score=26.46 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHhcCCCCceecCCCChhhhHhHhhhhC
Q 016432 299 EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG 336 (389)
Q Consensus 299 dDI~~a~~~l~~~~~~~Gv~~l~~P~~~YY~~l~~r~~ 336 (389)
+|+.+..++|.+- .+.++|.. ..||+.+.+|+|
T Consensus 15 ~dfne~~kRLdei--eekvef~~---~Ev~Qr~GkkiG 47 (75)
T COG4064 15 DDFNEIHKRLDEI--EEKVEFVN---GEVYQRIGKKIG 47 (75)
T ss_pred HHHHHHHHHHHHH--HHHHHhhH---HHHHHHHHHHhc
Confidence 4566666666632 11678876 578988888888
No 203
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=22.96 E-value=4.1e+02 Score=23.37 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=34.1
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEcCCEEEEEEc
Q 016432 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTA 87 (389)
Q Consensus 33 l~HI~~~V~D~~~a~~fy~~~lGF~~~~~~~~~~g~r~~~~~~~~~g~~~i~l~~ 87 (389)
-.=+++.|.|.+++...+. .|||.++..-. +.-..++.|++.+.|..
T Consensus 77 ~~E~e~~v~d~~~~~~iL~-~LG~~~~~~v~-------K~R~~~~l~~~~i~lD~ 123 (174)
T TIGR00318 77 RKEIEFKIEDIENALQILK-KLGFKKVYEVI-------KKRRIYQTNELNVSIDD 123 (174)
T ss_pred EEEEEEEECCHHHHHHHHH-HCCCeEEEEEE-------EEEEEEEECCEEEEEEc
Confidence 3448889999999998887 89999976532 22334556888887764
No 204
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=22.44 E-value=85 Score=27.33 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.1
Q ss_pred EeEEEEecCCHHHHHHHHHHhhCC
Q 016432 209 LDHAVGNVPELAPAVAYVKSFTGF 232 (389)
Q Consensus 209 iDHv~~~V~dl~~~~~fY~~~lGf 232 (389)
+||+++.|.+.+.+-+|.+..+-.
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~ 25 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQC 25 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHh
Confidence 799999999999999998877644
No 205
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=21.27 E-value=1.1e+02 Score=27.78 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=22.7
Q ss_pred ceeEeEEEEecCCHHHHHHHHHHhhCCeEe
Q 016432 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEF 235 (389)
Q Consensus 206 ~~~iDHv~~~V~dl~~~~~fY~~~lGf~~~ 235 (389)
--.+||+++.|++.+.+-+|-+..+-.-..
T Consensus 32 ~~~~DHialRvn~~~~A~~~~~~l~~~G~l 61 (185)
T PF06185_consen 32 QYEIDHIALRVNSNETAERWKQALLQCGEL 61 (185)
T ss_dssp T-EEEEEEEE-S-HHHHHHHHHHHTTTEEE
T ss_pred ccCCcEEEEecCCHHHHHHHHHHHHHhChh
Confidence 456999999999999999999988766543
No 206
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.47 E-value=2.9e+02 Score=21.06 Aligned_cols=28 Identities=11% Similarity=0.342 Sum_probs=22.6
Q ss_pred ceEEEEeCC----HHHHHHHHHHhcCCCCceecCCC
Q 016432 292 QHLALVSED----IFRTLREMRKRSGVGGFEFMPSP 323 (389)
Q Consensus 292 qHiAf~vdD----I~~a~~~l~~~~~~~Gv~~l~~P 323 (389)
-.+.+.|+| +.+..+.|++. |+++...-
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~----G~~~~~~~ 73 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSA----GYEVVDLS 73 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHC----CCCeEECC
Confidence 345678888 99999999999 99887543
Done!