BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016433
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 334 bits (856), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 168/248 (67%), Positives = 196/248 (79%), Gaps = 4/248 (1%)
Query: 67 GEVSKIIGSRALEDATGMEYLIEWKDGHAPSWVPQDYIAKDVVAEYESPWWTXXXXXXXX 126
GEV+KIIGSR + MEYLIEWKDGH+PSWVP YIA DVV+EYE+PWWT
Sbjct: 1 GEVNKIIGSRTAGEGA-MEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQ 59
Query: 127 XLKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALH 186
L +++E RDVDAVD +GRTALLFV+GLGS+ CVR+LAEAG DL+HRD GGLTALH
Sbjct: 60 ALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 116
Query: 187 MAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEILRVTPKGNPMQFARRLGLEAVI 246
MAAGYV+P V + L+ELGAD +VED+RGLT L LA+EIL+ TPKGNPMQF RR+GLE VI
Sbjct: 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI 176
Query: 247 RNLEEAVFEYAEVQEILEKRGKGDQLEYLVKWRDGGDNEWVKVGFIAEDLVTDYEAGLEY 306
LE VFEYAEV EI+EKRGKG +EYLV+W+DGGD EWVK +AED+ DYE GLEY
Sbjct: 177 NVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLEY 236
Query: 307 AVAEGVLG 314
AVAE V+G
Sbjct: 237 AVAESVIG 244
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 312 VLGKRMGDDGKREFLVKWTDIDEATWEPEENVDPDLIKEFE 352
++G R +G E+L++W D +W P + D++ E+E
Sbjct: 6 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE 46
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 146/187 (78%), Gaps = 4/187 (2%)
Query: 68 EVSKIIGSRALEDATGMEYLIEWKDGHAPSWVPQDYIAKDVVAEYESPWWTXXXXXXXXX 127
EV+KIIGSR + MEYLIEWKDGH+PSWVP YIA DVV+EYE+PWWT
Sbjct: 1 EVNKIIGSRTAGEG-AMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQA 59
Query: 128 LKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
L +++E RDVDAVD +GRTALLFV+GLGS+ CVR+LAEAG DL+HRD GGLTALHM
Sbjct: 60 LSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEILRVTPKGNPMQFARRLGLEAVIR 247
AAGYV+P V + L+ELGAD +VED+RGLT L LA+EIL+ TPKGNPMQF RR+GLE VI
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVIN 176
Query: 248 NLEEAVF 254
LE VF
Sbjct: 177 VLEGQVF 183
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 258 EVQEILEKRGKGD-QLEYLVKWRDGGDNEWVKVGFIAEDLVTDYE 301
EV +I+ R G+ +EYL++W+DG WV +IA D+V++YE
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE 45
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 312 VLGKRMGDDGKREFLVKWTDIDEATWEPEENVDPDLIKEFE 352
++G R +G E+L++W D +W P + D++ E+E
Sbjct: 5 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE 45
>pdb|1X3Q|A Chain A, 3d Solution Structure Of The Chromo-2 Domain Of Cpsrp43
pdb|2HUG|A Chain A, 3d Solution Structure Of The Chromo-2 Domain Of Cpsrp43
Complexed With Cpsrp54 Peptide
Length = 57
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 43/53 (81%)
Query: 253 VFEYAEVQEILEKRGKGDQLEYLVKWRDGGDNEWVKVGFIAEDLVTDYEAGLE 305
VFEYAEV EI+EKRGKG +EYLV+W+DGGD EWVK +AED+ DYE GLE
Sbjct: 4 VFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLE 56
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 66 YGEVSKIIGSRALEDATGMEYLIEWKDGHAPSWVPQDYIAKDVVAEYE 113
Y EV +I+ R +EYL+ WKDG WV ++A+DV +YE
Sbjct: 7 YAEVDEIVEKRG--KGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE 52
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 304 LEYAVAEGVLGKRMGDDGKREFLVKWTDIDEATWEPEENVDPDLIKEFED 353
EYA + ++ KR G E+LV+W D + W +V D+ K++ED
Sbjct: 5 FEYAEVDEIVEKR-GKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYED 53
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 20/141 (14%)
Query: 128 LKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
+K++IE +G DV+A D+DGRT L + + G + V++L G D+N +DS G T LH
Sbjct: 20 VKDLIE--NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS-DGRTPLHY 76
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALA-----KEILR-VTPKG---------- 231
AA + KLL+ GAD + +D G TPL A KEI++ + KG
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDG 136
Query: 232 -NPMQFARRLGLEAVIRNLEE 251
P+ AR G E +++ LE+
Sbjct: 137 RTPLDLAREHGNEEIVKLLEK 157
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 129 KEIIE--AGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAG 170
KEI++ G DV+ D+DGRT L G+E V++L + G
Sbjct: 116 KEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|1X32|A Chain A, Three Dimensional Solution Structure Of The Chromo1 Domain
Of Cpsrp43
Length = 47
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 67 GEVSKIIGSRALEDATGMEYLIEWKDGHAPSWVPQDYIAKDVVAE 111
GEV+KIIGSR + MEYLIEWKDGH+PSWVP YIA DVV+E
Sbjct: 3 GEVNKIIGSRTAGEGA-MEYLIEWKDGHSPSWVPSSYIAADVVSE 46
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 258 EVQEILEKRGKGD-QLEYLVKWRDGGDNEWVKVGFIAEDLVTD 299
EV +I+ R G+ +EYL++W+DG WV +IA D+V++
Sbjct: 4 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE 46
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 312 VLGKRMGDDGKREFLVKWTDIDEATWEPEENVDPDLIKE 350
++G R +G E+L++W D +W P + D++ E
Sbjct: 8 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE 46
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 20/141 (14%)
Query: 128 LKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
+K++IE +G DV+A D+DGRT L + G + V++L G D+N +DS G T LH
Sbjct: 20 VKDLIE--NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHH 76
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALA-----KEILR-VTPKG---------- 231
AA V KLL+ GAD + +D G TPL A KE+++ + KG
Sbjct: 77 AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDG 136
Query: 232 -NPMQFARRLGLEAVIRNLEE 251
P+ AR G E V++ LE+
Sbjct: 137 RTPLDLAREHGNEEVVKLLEK 157
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 158 GSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTP 217
G++ V+ L E G D+N DS G T LH AA V KLL+ GAD + +D G TP
Sbjct: 15 GNKDRVKDLIENGADVNASDS-DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTP 73
Query: 218 LALAKE 223
L A E
Sbjct: 74 LHHAAE 79
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAG 170
G DV+ D+DGRT L G+E V++L + G
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 20/141 (14%)
Query: 128 LKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
+K+++E +G DV+A D+DG+T L + G + V++L G D N +DS G T LH+
Sbjct: 20 VKDLLE--NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHL 76
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALA-----KEILRV------------TPK 230
AA V KLLL GAD + +D G TPL LA KE++++ +
Sbjct: 77 AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG 136
Query: 231 GNPMQFARRLGLEAVIRNLEE 251
P+ AR G E V++ LE+
Sbjct: 137 RTPLDLAREHGNEEVVKLLEK 157
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 158 GSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTP 217
G++ V+ L E G D+N DS G T LH+AA V KLLL GAD + +D G TP
Sbjct: 15 GNKDRVKDLLENGADVNASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP 73
Query: 218 LALAKE 223
L LA E
Sbjct: 74 LHLAAE 79
>pdb|1X3P|A Chain A, 3d Solution Structure Of The Chromo-3 Domain Of Cpsrp43
Length = 54
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 307 AVAEGVLGKRMGDDGKR-EFLVKWTDIDEATWEPEENVDPDLIKEFEDSQ 355
AVAE V+GKR+GDDGK E+LVKWTD+ +ATWEP++NVD L+ ++ Q
Sbjct: 1 AVAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQDNVDSTLVLLYQQQQ 50
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 72 IIGSRALEDATGMEYLIEWKDGHAPSWVPQDYIAKDVVAEYE 113
+IG R +D +EYL++W D +W PQD + +V Y+
Sbjct: 6 VIGKRVGDDGKTIEYLVKWTDMSDATWEPQDNVDSTLVLLYQ 47
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 113 ESPWWTXXXXXXXXXLKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTD 172
+P +K ++EAG DV+A D +GRT L + G V++L EAG D
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 173 LNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
+N +D G T LH+AA V KLLLE GAD + +D G TPL LA
Sbjct: 61 VNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 146 DGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGA 205
+GRT L + G V++L EAG D+N +D G T LH+AA V KLLLE GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 59
Query: 206 DADVEDDRGLTPLALA 221
D + +D G TPL LA
Sbjct: 60 DVNAKDKNGRTPLHLA 75
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 113 ESPWWTXXXXXXXXXLKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTD 172
+P +K ++EAG DV+A D +GRT L + G V++L EAG D
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93
Query: 173 LNHRDSGGGLTALHMAAGYVKPGVAKLLLELGA 205
+N +D G T LH+AA V KLLLE GA
Sbjct: 94 VNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 125
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 20/141 (14%)
Query: 128 LKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
+K+++E +G D +A D+DGRT L + + G + V++L G D N +DS G T LH
Sbjct: 20 VKDLLE--NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS-DGRTPLHY 76
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALA-----KEILR-VTPKG---------- 231
AA + KLLL GAD + +D G TPL A KEI++ + KG
Sbjct: 77 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 232 -NPMQFARRLGLEAVIRNLEE 251
P+ AR G E +++ LE+
Sbjct: 137 RTPLDLAREHGNEEIVKLLEK 157
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D+ G T L + +G V VL + G D+N RD+ G T LH+AA
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG-WTPLHLAADN 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALAKE 223
+ ++LL+ GAD + +D GLTPL LA +
Sbjct: 91 GHLEIVEVLLKYGADVNAQDAYGLTPLHLAAD 122
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI+E G DV+A D DG T L + G V VL + G D+N +D+ G LT LH+
Sbjct: 61 EIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYG-LTPLHL 119
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
AA + ++LL+ GAD + +D G T ++
Sbjct: 120 AADRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D G T LH+AA P + ++LL+ GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGS-TPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 211 DDRGLTPLALAKE 223
D G TPL LA +
Sbjct: 77 DTDGWTPLHLAAD 89
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G D +A D+ GRT L + +G V VL G D+N D+ G T LH+AA
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDT-NGTTPLHLAASL 78
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LL+ GAD + +D G+TPL LA
Sbjct: 79 GHLEIVEVLLKYGADVNAKDATGITPLYLA 108
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI+E +G DV+AVD +G T L + LG V VL + G D+N +D+ G+T L++
Sbjct: 49 EIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDA-TGITPLYL 107
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEI 224
AA + + ++LL+ GAD + +D G T ++ +I
Sbjct: 108 AAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDI 144
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D N D G T LHMAA + ++LL GAD +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGR-TPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 211 DDRGLTPLALAKEI 224
D G TPL LA +
Sbjct: 65 DTNGTTPLHLAASL 78
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A DNDG T L + G V VL + G D+N D G+T LH+AA
Sbjct: 32 ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL-TGITPLHLAAAT 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LL+ GAD + D+ G TPL LA
Sbjct: 91 GHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI+E +G DV+A D G T L + G V VL + G D+N D+ G T LH+
Sbjct: 61 EIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGH-TPLHL 119
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPL 218
AA Y + ++LL+ GAD + +D G T
Sbjct: 120 AAKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D+ G T LH+AA + ++LL+ GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 211 DDRGLTPLALA 221
D G+TPL LA
Sbjct: 77 DLTGITPLHLA 87
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 65/138 (47%), Gaps = 18/138 (13%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D DG T L + G V VL +AG D+N +D G T LH+AA
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAARE 78
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALAK-----EILRVTPKG------------NPM 234
+ ++LL+ GAD + +D G TPL LA EI+ V K P
Sbjct: 79 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPF 138
Query: 235 QFARRLGLEAVIRNLEEA 252
A R G E + L++A
Sbjct: 139 DLAIREGHEDIAEVLQKA 156
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N +D G T LH+AA + ++LL+ GAD + +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 211 DDRGLTPLALA 221
D G TPL LA
Sbjct: 65 DKDGYTPLHLA 75
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D DG T L + G V VL +AG D+N +D G T LH+AA
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAARE 78
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LL+ GAD + +D G TPL LA
Sbjct: 79 GHLEIVEVLLKAGADVNAKDKDGYTPLHLA 108
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G DV+A D DG T L + G V VL +AG D+N +D G T LH+AA +
Sbjct: 58 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG-YTPLHLAAREGHLEI 116
Query: 197 AKLLLELGADADVEDDRGLTPLALA 221
++LL+ GAD + +D G TP LA
Sbjct: 117 VEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N +D G T LH+AA + ++LL+ GAD + +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 211 DDRGLTPLALA 221
D G TPL LA
Sbjct: 65 DKDGYTPLHLA 75
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D++G T L + G V VL + G D+N DS G+T LH+AA
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDS-AGITPLHLAAYD 82
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALAK-----EILRVTPK-GNPMQFARRLGLEAV 245
+ ++LL+ GAD + D G TPL LA EI+ V K G + LGL A
Sbjct: 83 GHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAF 142
Query: 246 IRNLEEAVFEYAEV 259
++ + + AE+
Sbjct: 143 DISINQGQEDLAEI 156
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D G LT LH+AA + + ++LL+ GAD +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNG-LTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 211 DDRGLTPLALAK-----EILRVTPK 230
D G+TPL LA EI+ V K
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLK 93
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D DG T L + G V VL +AG D+N +D G T LH+AA
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAARE 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LL+ GAD + +D G TPL LA
Sbjct: 91 GHLEIVEVLLKAGADVNAKDKDGYTPLHLA 120
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G DV+A D DG T L + G V VL +AG D+N +D G T LH+AA +
Sbjct: 70 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG-YTPLHLAAREGHLEI 128
Query: 197 AKLLLELGADADVEDDRGLTPL 218
++LL+ GAD + +D G T
Sbjct: 129 VEVLLKAGADVNAQDKFGKTAF 150
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N +D G T LH+AA + ++LL+ GAD + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 211 DDRGLTPLALA 221
D G TPL LA
Sbjct: 77 DKDGYTPLHLA 87
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 146 DGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGA 205
+GRT L + G V++L EAG D+N +D G T LH+AA V KLLLE GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 59
Query: 206 DADVEDDRGLTPLALA 221
D + +D G TPL LA
Sbjct: 60 DVNAKDKNGRTPLHLA 75
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 113 ESPWWTXXXXXXXXXLKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTD 172
+P +K ++EAG DV+A D +GRT L + G V++L EAG D
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 173 LNHRDSGGGLTALHMAAGYVKPGVAKLLLELGA 205
+N +D G T LH+AA V KLLLE GA
Sbjct: 61 VNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 92
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D G T L + G V VL + G D+N D+ G T LH+AA +
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS-TPLHLAAHF 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LL+ GAD + +DD G+TPL LA
Sbjct: 91 GHLEIVEVLLKNGADVNAKDDNGITPLHLA 120
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI+E +G DV+A D G T L + G V VL + G D+N +D G +T LH+
Sbjct: 61 EIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNG-ITPLHL 119
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPL 218
AA + ++LL+ GAD + +D G T
Sbjct: 120 AANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D+ G T L + G V VL + G D+N DS G +T LH+AA
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG-VTPLHLAADR 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALAKEI 224
V ++LL+ GAD + D G TPL LA I
Sbjct: 91 GHLEVVEVLLKNGADVNANDHNGFTPLHLAANI 123
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 117 WTXXXXXXXXXLKEIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLN 174
WT EI+E +G DV+A D+ G T L + G V VL + G D+N
Sbjct: 48 WTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 175 HRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPL 218
D G T LH+AA + ++LL+ GAD + +D G T
Sbjct: 108 ANDHNG-FTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D G T L + G V VL + G D+N +DS G +T LH+AA
Sbjct: 32 ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG-VTPLHLAARR 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LL+ GAD + D G TPL LA
Sbjct: 91 GHLEIVEVLLKNGADVNASDSHGFTPLHLA 120
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N RD G T LH+AA + + ++LL+ GAD + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTG-WTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 211 DDRGLTPLALA 221
D G+TPL LA
Sbjct: 77 DSLGVTPLHLA 87
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 117 WTXXXXXXXXXLKEIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLN 174
WT EI+E +G DV+A D+ G T L + G V VL + G D+N
Sbjct: 48 WTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 175 HRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPL 218
DS G T LH+AA + ++LL+ GAD + +D G T
Sbjct: 108 ASDSHG-FTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D+ G+T L + G V VL + G D+N D G T LH+AA Y
Sbjct: 32 ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD-TPLHLAALY 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALAKE 223
+ ++LL+ GAD + D G TPL LA +
Sbjct: 91 GHLEIVEVLLKNGADVNATDTYGFTPLHLAAD 122
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI+E G DV+A D G T L + G V VL + G D+N D+ G T LH+
Sbjct: 61 EIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYG-FTPLHL 119
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPL 218
AA + ++LL+ GAD + +D G T
Sbjct: 120 AADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D G T LH+AA + ++LL+ GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 211 DDRGLTPLALA 221
D G TPL LA
Sbjct: 77 DKMGDTPLHLA 87
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 198 KLLLELGADADVEDDRGLTPLALAK-----EILRVTPK-GNPMQFARRLGLEAVIRNLEE 251
++L+ GAD + EDD G TPL LA EI+ V K G + A ++G +
Sbjct: 31 RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHL---A 87
Query: 252 AVFEYAEVQEILEKRG 267
A++ + E+ E+L K G
Sbjct: 88 ALYGHLEIVEVLLKNG 103
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A DN G T L + G V VL + G D++ D G T LH+AA +
Sbjct: 32 ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG-YTPLHLAAYW 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALAKE 223
+ ++LL+ GAD + D G+TPL LA +
Sbjct: 91 GHLEIVEVLLKNGADVNAMDSDGMTPLHLAAK 122
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI+E G DVDA D G T L + G V VL + G D+N DS G +T LH+
Sbjct: 61 EIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDG-MTPLHL 119
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPL 218
AA + + ++LL+ GAD + +D G T
Sbjct: 120 AAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 32/134 (23%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D+ G T LH+AA + ++LL+ GAD D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADN-TGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 211 DDRGLTPLALAK-----EILRVTPKG------------NPMQFARRLGLEAVIRNLEEAV 253
D G TPL LA EI+ V K P+ A + G
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWG------------ 124
Query: 254 FEYAEVQEILEKRG 267
Y E+ E+L K G
Sbjct: 125 --YLEIVEVLLKHG 136
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 34/157 (21%)
Query: 137 GRDVDAVDNDGRTALLFVSGLG-------------SEACVRVLAEAGTDLNHRDSGGGLT 183
G DV+ DG T L+ S G + A + G L+++ G T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 184 ALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAK--------EIL---------- 225
ALH+AA Y + AK LLE ADA+++D+ G TPL A +IL
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 226 RVTPKGNPMQFARRLGLEAVIRNLEEAVFEYAEVQEI 262
R+ P+ A RL +E + LE+ + +A+V +
Sbjct: 121 RMHDGTTPLILAARLAVEGM---LEDLINSHADVNAV 154
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 130 EIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAA 189
+I+ D+DA +DG T L+ + L E + L + D+N D G +ALH AA
Sbjct: 108 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAA 166
Query: 190 GYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
A +LL+ GA+ D++++R TPL LA
Sbjct: 167 AVNNVDAAVVLLKNGANKDMQNNREETPLFLA 198
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 34/155 (21%)
Query: 139 DVDAVDNDGRTALLFVSGLG-------------SEACVRVLAEAGTDLNHRDSGGGLTAL 185
DV+ DG T L+ S G + A + G L+++ G TAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 186 HMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAK--------EIL----------RV 227
H+AA Y + AK LLE ADA+++D+ G TPL A +IL R+
Sbjct: 62 HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 228 TPKGNPMQFARRLGLEAVIRNLEEAVFEYAEVQEI 262
P+ A RL +E + LE+ + +A+V +
Sbjct: 122 HDGTTPLILAARLAVEGM---LEDLINSHADVNAV 153
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 130 EIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAA 189
+I+ D+DA +DG T L+ + L E + L + D+N D G +ALH AA
Sbjct: 107 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAA 165
Query: 190 GYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
A +LL+ GA+ D++++R TPL LA
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPLFLA 197
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D G T L + G V VL + G D+N D+ G T LH+AA
Sbjct: 32 ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGA-TPLHLAADN 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LL+ GAD + +D G TPL LA
Sbjct: 91 GHLEIVEVLLKHGADVNAKDYEGFTPLHLA 120
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G DV+A DN G T L + G V VL + G D+N +D G T LH+AA +
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEG-FTPLHLAAYDGHLEI 128
Query: 197 AKLLLELGADADVEDDRGLTPL 218
++LL+ GAD + +D G T
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAF 150
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D G T LH+AA + ++LL+ GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGH-TPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 211 DDRGLTPLALAKE 223
D+ G TPL LA +
Sbjct: 77 DNYGATPLHLAAD 89
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 107 DVVAEYESPWWTXXXXXXXXXLKEIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVR 164
DV AE S W L EI+E +G DV+AVD+ G T L + G V
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHL-EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVE 97
Query: 165 VLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPL 218
VL + G D+N D G T LH+AA + + ++LL+ GAD + +D G T
Sbjct: 98 VLLKNGADVNANDMEGH-TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D G T L + G V VL + G D+N D G+T L +AA +
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-AGMTPLRLAALF 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LL+ GAD + D G TPL LA
Sbjct: 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 20/116 (17%)
Query: 163 VRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAK 222
VR+L G D+N D+ G T LH+AA + ++LL+ GAD + D G+TPL LA
Sbjct: 30 VRILMANGADVNAEDASG-WTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88
Query: 223 -----EILRVTPK------GNPMQFARRLGLEAVIRNLEEAVFEYAEVQEILEKRG 267
EI+ V K N M+ L L A+F + E+ E+L K G
Sbjct: 89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHL--------AAMFGHLEIVEVLLKNG 136
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+AVDN G T L + G V VL + G D++ D G T LH+AA
Sbjct: 32 ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG-FTPLHLAAMT 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALAKE 223
+ ++LL+ GAD + D G TPL LA +
Sbjct: 91 GHLEIVEVLLKYGADVNAFDMTGSTPLHLAAD 122
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 163 VRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
VR+L G D+N D+ G LT LH+AA + ++LL+ GAD D D G TPL LA
Sbjct: 30 VRILIANGADVNAVDNTG-LTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLA 87
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI+E G DVDA D G T L + G V VL + G D+N D G T LH+
Sbjct: 61 EIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS-TPLHL 119
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPL 218
AA + ++LL+ GAD + +D G T
Sbjct: 120 AADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A+D DG T L + LG V VL + G D+N D+ G+T LH+AA
Sbjct: 32 ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN-FGITPLHLAAIR 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPL 218
+ ++LL+ GAD + +D G T
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 158 GSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTP 217
G + VR+L G D+N D G LT LH+AA + ++LL+ GAD + ED+ G+TP
Sbjct: 25 GQDDEVRILMANGADVNALDEDG-LTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITP 83
Query: 218 LALA 221
L LA
Sbjct: 84 LHLA 87
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D G T L + +G V VL + G D+N D G T LH+AA
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGS-TPLHLAAKR 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALAKE 223
+ ++LL+ GAD + +D G TPL LA +
Sbjct: 91 GHLEIVEVLLKYGADVNADDTIGSTPLHLAAD 122
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI+E +G DV+A+D G T L + G V VL + G D+N D+ G T LH+
Sbjct: 61 EIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS-TPLHL 119
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPL 218
AA + ++LL+ GAD + +D G T
Sbjct: 120 AADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D+ G T LH+AA + ++LL+ GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGD-TPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 211 DDRGLTPLALA 221
D G TPL LA
Sbjct: 77 DFSGSTPLHLA 87
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 21/111 (18%)
Query: 170 GTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAK------- 222
G L+++ G TALH+AA Y + AK LLE ADA ++D+ G TPL A
Sbjct: 11 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV 70
Query: 223 -EIL----------RVTPKGNPMQFARRLGLEAVIRNLEEAVFEYAEVQEI 262
+IL R+ P+ A RL LE + LE+ + +A+V +
Sbjct: 71 FQILLRNRATDLDARMHDGTTPLILAARLALEGM---LEDLINSHADVNAV 118
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 130 EIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAA 189
+I+ D+DA +DG T L+ + L E + L + D+N D G +ALH AA
Sbjct: 72 QILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK-SALHWAA 130
Query: 190 GYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
A +LL+ GA+ D+++++ TPL LA
Sbjct: 131 AVNNVDAAVVLLKNGANKDMQNNKEETPLFLA 162
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 34/155 (21%)
Query: 139 DVDAVDNDGRTALLFVSGLG-------------SEACVRVLAEAGTDLNHRDSGGGLTAL 185
DV+ DG T L+ S G + A + G L+++ G TAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 186 HMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAK--------EIL----------RV 227
H+AA Y + AK LLE ADA+++D+ G TPL A +IL R+
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 228 TPKGNPMQFARRLGLEAVIRNLEEAVFEYAEVQEI 262
P+ A RL +E + LE+ + +A+V +
Sbjct: 122 HDGTTPLILAARLAVEGM---LEDLINSHADVNAV 153
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 130 EIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAA 189
+I+ D+DA +DG T L+ + L E + L + D+N D G +ALH AA
Sbjct: 107 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAA 165
Query: 190 GYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
A +LL+ GA+ D++++R TPL LA
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPLFLA 197
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 21/111 (18%)
Query: 170 GTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAK------- 222
G L+++ G TALH+AA Y + AK LLE ADA+++D+ G TPL A
Sbjct: 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 223 -EIL----------RVTPKGNPMQFARRLGLEAVIRNLEEAVFEYAEVQEI 262
+IL R+ P+ A RL +E + LE+ + +A+V +
Sbjct: 74 FQILIRNRATDLDARMHDGTTPLILAARLAVEGM---LEDLINSHADVNAV 121
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 130 EIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAA 189
+I+ D+DA +DG T L+ + L E + L + D+N D G +ALH AA
Sbjct: 75 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAA 133
Query: 190 GYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
A +LL+ GA+ D++++R TPL LA
Sbjct: 134 AVNNVDAAVVLLKNGANKDMQNNREETPLFLA 165
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 143 VDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLE 202
D G TAL + + L EA D N +D+ G T LH A GV ++L+
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQILIR 79
Query: 203 LGA-DADVEDDRGLTPLALAKEI 224
A D D G TPL LA +
Sbjct: 80 NRATDLDARMHDGTTPLILAARL 102
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 140 VDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKL 199
+ A + +G T L S G V +L G D+N ++ G TALH+A P + L
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 200 LLELGADADVEDDRGLTPLALA 221
LL+ GAD + +G +P L
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLT 191
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 183 TALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKE 223
T LH+A +P +A+ LL G D ++ D RG TPL LA E
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 87
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D G T L V G + VL + D+N D G T LH+AA
Sbjct: 32 ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG-WTPLHLAAYR 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALAKE 223
+ ++LL+ GAD + D +G TPL LA E
Sbjct: 91 GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAE 122
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 139 DVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAK 198
DV+A D G T L + G V VL + G D+N D G T LH+AA + +
Sbjct: 72 DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQG-YTPLHLAAEDGHLEIVE 130
Query: 199 LLLELGADADVEDDRGLTPLALA 221
+LL+ GAD + +D G T ++
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDIS 153
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 105 AKDVVAEYESPWWTXXXXXXXXXLKEIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEAC 162
A DV A +S W L EI+E G DV+A+D G T L + G
Sbjct: 70 AADVNASDKSGWTPLHLAAYRGHL-EIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEI 128
Query: 163 VRVLAEAGTDLNHRDSGG 180
V VL + G D+N +D G
Sbjct: 129 VEVLLKYGADVNAQDKFG 146
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 140 VDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKL 199
+ A + +G T L S G V +L G D+N ++ G TALH+A P + L
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 200 LLELGADADVEDDRGLTPLALA 221
LL+ GAD + +G +P L
Sbjct: 167 LLKCGADVNRVTYQGYSPYQLT 188
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 183 TALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKE 223
T LH+A +P +A+ LL G D ++ D RG TPL LA E
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 84
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A+D+ G T L + G V VL + G D+N RD G T LH+AA
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDI-WGRTPLHLAATV 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LLE GAD + +D G T ++
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D G +T LH+AA + ++LL+ GAD +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 211 DDRGLTPLALAKEI 224
D G TPL LA +
Sbjct: 77 DIWGRTPLHLAATV 90
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGG 180
EI+E G DV+A D GRT L + +G V VL E G D+N +D G
Sbjct: 61 EIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A+D+ G T L + G V VL + G D+N DS G T LH+AA
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDS-WGRTPLHLAATV 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LLE GAD + +D G T ++
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D G +T LH+AA + ++LL+ GAD +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 211 DDRGLTPLALAKEI 224
D G TPL LA +
Sbjct: 77 DSWGRTPLHLAATV 90
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGG 180
EI+E G DV+A D+ GRT L + +G V VL E G D+N +D G
Sbjct: 61 EIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D G T LH+AA Y + ++LL+ GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGN-TPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 211 DDRGLTPLALA 221
D+ G TPL LA
Sbjct: 77 DNDGSTPLHLA 87
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D G T L + V VL + G D+N D+ G T LH+AA +
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS-TPLHLAALF 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LL+ GAD + +D G T ++
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGG 180
EI+E G DV+A DNDG T L + G V VL + G D+N +D G
Sbjct: 61 EIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFG 113
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D G T L + G V VL + G D+N D G T LH+AA
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS-TPLHLAALI 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LL+ GAD + D G TPL LA
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 163 VRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAK 222
VR+L G D+N D+ G LT LH+AA Y + ++LL+ GAD + D G TPL LA
Sbjct: 30 VRILMANGADVNATDASG-LTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAA 88
Query: 223 EI 224
I
Sbjct: 89 LI 90
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI+E G DV+A+D G T L + +G V VL + G D+N D+ G T LH+
Sbjct: 61 EIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD-TPLHL 119
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPL 218
AA + ++LL+ GAD + +D G T
Sbjct: 120 AAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D G T L + G V VL + G D+N D G T LH+AA
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS-TPLHLAALI 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LL+ GAD + D G TPL LA
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 163 VRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAK 222
VR+L G D+N D+ G LT LH+AA Y + ++LL+ GAD + D G TPL LA
Sbjct: 30 VRILMANGADVNATDASG-LTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAA 88
Query: 223 EI 224
I
Sbjct: 89 LI 90
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI+E G DV+A+D G T L + +G V VL + G D+N D+ G T LH+
Sbjct: 61 EIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD-TPLHL 119
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPL 218
AA + ++LL+ GAD + +D G T
Sbjct: 120 AAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G +V+ D G+T L++ G L E G ++N R+ G T L +A+ Y + +
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE-TPLIVASKYGRSEI 149
Query: 197 AKLLLELGADADVEDDRGLTPLALAK 222
K LLELGAD D GLT A A+
Sbjct: 150 VKKLLELGADISARDLTGLTAEASAR 175
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 144 DNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLEL 203
D+ RT L+ LG E + L E L +D G TAL A + G+A+ LL
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGS-TALIWAVKNNRLGIAEKLLSK 90
Query: 204 GADADVEDDRGLTPL 218
G++ + +D G TPL
Sbjct: 91 GSNVNTKDFSGKTPL 105
>pdb|3F2U|A Chain A, Crystal Structure Of Human Chromobox Homolog 1 (Cbx1)
Length = 55
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 308 VAEGVLGKRMGDDGKREFLVKWTDI--DEATWEPEENVD-PDLIKEFEDSQS 356
V E VL +R+ GK E+L+KW ++ TWEPEEN+D PDLI EF SQ
Sbjct: 4 VVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 54
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D G T L + G V VL + G D+N D+ G T LH+AA
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-IGFTPLHLAAFI 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPL 218
+A++LL+ GAD + +D G T
Sbjct: 91 GHLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 163 VRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAK 222
VR+L G D+N +D G LT L++A + + ++LL+ GAD + D G TPL LA
Sbjct: 30 VRILMANGADVNAKDEYG-LTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88
Query: 223 EI 224
I
Sbjct: 89 FI 90
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI+E +G DV+AVD G T L + +G VL + G D+N +D G TA +
Sbjct: 61 EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK-TAFDI 119
Query: 188 AAGYVKPGVAKLLLEL 203
+ G +A++L +L
Sbjct: 120 SIGNGNEDLAEILQKL 135
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A+D+ G T L + G V VL + G D+N D G T LH+AA
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDI-WGRTPLHLAATV 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ ++LLE GAD + +D G T ++
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D G +T LH+AA + ++LL+ GAD +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 211 DDRGLTPLALAKEI 224
D G TPL LA +
Sbjct: 77 DIWGRTPLHLAATV 90
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGG 180
EI+E G DV+A D GRT L + +G V VL E G D+N +D G
Sbjct: 61 EIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
>pdb|3DM1|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
pdb|3DM1|C Chain C, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
pdb|3DM1|E Chain E, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
pdb|3DM1|G Chain G, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
Length = 58
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 308 VAEGVLGKRMGDDGKREFLVKWTDIDEA--TWEPEENVD-PDLIKEFEDSQSDG 358
V E VL +R+ + GK E+ +KW +A TWEPEEN+D P+LI+ F +SQ G
Sbjct: 3 VVEKVLDRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAG 55
>pdb|3TZD|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3)
Length = 58
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 4/52 (7%)
Query: 308 VAEGVLGKRMGDDGKREFLVKWTDIDEA--TWEPEENVD-PDLIKEFEDSQS 356
V E VL +R+ + GK E+ +KW +A TWEPEEN+D P+LI+ F +SQ
Sbjct: 8 VVEKVLDRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQK 58
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 138 RDVDAVDNDGR--TALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPG 195
+ V+ D +GR T L F +G + V L + G D++ +D GGL LH A Y
Sbjct: 31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGHYE 89
Query: 196 VAKLLLELGADADVEDDRGLTPL 218
VA+LL++ GA +V D TPL
Sbjct: 90 VAELLVKHGAVVNVADLWKFTPL 112
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 130 EIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAA 189
+I+ +++A +DG T L+ + L E V L A D+N D+ G TALH AA
Sbjct: 101 QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK-TALHWAA 159
Query: 190 GYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
+LL A+ D +DD+ TPL LA
Sbjct: 160 AVNNTEAVNILLMHHANRDAQDDKDETPLFLA 191
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 170 GTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPL--ALAKEIL-- 225
G +LN G T+LH+AA + + AK LL+ GADA+ +D+ G TPL A+A + +
Sbjct: 40 GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGV 99
Query: 226 --------------RVTPKGNPMQFARRLGLEAVIRNL 249
R+ P+ A RL +E ++ +L
Sbjct: 100 FQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 143 VDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLE 202
+D G T+L + + L +AG D N +D+ G T LH A GV ++LL
Sbjct: 47 MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR-TPLHAAVAADAMGVFQILLR 105
Query: 203 LGA---DADVEDDRGLTPLALAKEI 224
A +A + D G TPL LA +
Sbjct: 106 NRATNLNARMHD--GTTPLILAARL 128
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 138 RDVDAVDNDGR--TALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPG 195
+ V+ D +GR T L F +G + V L + G D++ +D GGL LH A Y
Sbjct: 33 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGHYE 91
Query: 196 VAKLLLELGADADVEDDRGLTPL 218
VA+LL++ GA +V D TPL
Sbjct: 92 VAELLVKHGAVVNVADLWKFTPL 114
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 138 RDVDAVDNDGR--TALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPG 195
+ V+ D +GR T L F +G + V L + G D++ +D GGL LH A Y
Sbjct: 35 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGHYE 93
Query: 196 VAKLLLELGADADVEDDRGLTPL 218
VA+LL++ GA +V D TPL
Sbjct: 94 VAELLVKHGAVVNVADLWKFTPL 116
>pdb|2L11|A Chain A, Solution Nmr Structure Of The Cbx3 In Complex With H3k9me3
Peptide
Length = 54
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 4/52 (7%)
Query: 308 VAEGVLGKRMGDDGKREFLVKWTDIDEA--TWEPEENVD-PDLIKEFEDSQS 356
V E VL +R+ + GK E+ +KW +A TWEPEEN+D P+LI+ F +SQ
Sbjct: 4 VVEKVLDRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQK 54
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 137 GRDVDAVDNDGRTALLFVS-GLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPG 195
G+DVD +D +G T L++ + S R+L +N D TALH A
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191
Query: 196 VAKLLLELGADADVEDDRGLTPLALAKE 223
V LLLE GA+ D ++ +G + L LAK+
Sbjct: 192 VISLLLEAGANVDAQNIKGESALDLAKQ 219
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 137 GRDVDAVDND-GRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPG 195
G VD + D T L + + G + V L + G D + D G G + +H+AA +
Sbjct: 65 GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID-GEGCSCIHLAAQFGHTS 123
Query: 196 VAKLLLELGADADVEDDRGLTPLALA 221
+ L+ G D D+ D G+TPL A
Sbjct: 124 IVAYLIAKGQDVDMMDQNGMTPLMWA 149
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 140 VDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKL 199
++A + DG T L VR+L +AG DLN + G T LH+A V +L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 200 LLELGADADVEDDRGLTPLALAKEILRVTP 229
LL+ GAD G TPL A +LR P
Sbjct: 211 LLKAGADPTARMYGGRTPLGSA--LLRPNP 238
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 140 VDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKL 199
++A + DG T L VR+L +AG DLN + G T LH+A V +L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 200 LLELGADADVEDDRGLTPLALAKEILRVTP 229
LL+ GAD G TPL A +LR P
Sbjct: 211 LLKAGADPTARMYGGRTPLGSA--LLRPNP 238
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI++A G G V+AV+ +G T L + + +L E G + + +D TA+H
Sbjct: 87 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHR 145
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEILRV 227
AA + +LL A +++D G TPL LA + RV
Sbjct: 146 AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 185
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 128 LKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
LKE I A D D D RTAL + G V L + G +N +D G + LH+
Sbjct: 22 LKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLHI 79
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
AA + + K LL GA + + G TPL A
Sbjct: 80 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYA 113
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G + DA D+ TA+ + G+ + +L N +D+ G T LH+A +
Sbjct: 129 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGN-TPLHLACDEERVEE 187
Query: 197 AKLLLELGADADVEDDRGLTPLALAK 222
AKLL+ GA +E+ TPL +AK
Sbjct: 188 AKLLVSQGASIYIENKEEKTPLQVAK 213
>pdb|2DNV|A Chain A, Solution Structure Of Rsgi Ruh-055, A Chromo Domain From
Mus Musculus Cdna
Length = 64
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 308 VAEGVLGKRMGDDGKREFLVKWTDIDE--ATWEPEENV-DPDLIKEFEDSQSDG 358
AE +L +R+ G+ E+LVKW + +TWEPEEN+ D L+ FE S G
Sbjct: 12 AAEALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFESGPSSG 64
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI++A G G V+AV+ +G T L + + +L E G + + +D TA+H
Sbjct: 88 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHR 146
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEILRV 227
AA + +LL A +++D G TPL LA + RV
Sbjct: 147 AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 186
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 128 LKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
LKE I A D D D RTAL + G V L + G +N +D G + LH+
Sbjct: 23 LKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLHI 80
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
AA + + K LL GA + + G TPL A
Sbjct: 81 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYA 114
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G + DA D+ TA+ + G+ + +L N +D+ G T LH+A +
Sbjct: 130 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGN-TPLHLACDEERVEE 188
Query: 197 AKLLLELGADADVEDDRGLTPLALAK 222
AKLL+ GA +E+ TPL +AK
Sbjct: 189 AKLLVSQGASIYIENKEEKTPLQVAK 214
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 146 DGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGA 205
DG T L + G V+ L G D+N R S G T LH+AA + KLLL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 206 DADVEDDRGLTPLALAKE 223
D + G TP LAK+
Sbjct: 67 DVNARSKDGNTPEHLAKK 84
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G DV+A DG T L + G V++L G D+N R S G T H+A +
Sbjct: 32 GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHLAKKNGHHEI 90
Query: 197 AKLLLELGADADVE 210
KLL GAD +
Sbjct: 91 VKLLDAKGADVNAR 104
>pdb|1AP0|A Chain A, Structure Of The Chromatin Binding (Chromo) Domain From
Mouse Modifier Protein 1, Nmr, 26 Structures
pdb|1GUW|A Chain A, Structure Of The Chromodomain From Mouse Hp1beta In
Complex With The Lysine 9-Methyl Histone H3 N-Terminal
Peptide, Nmr, 25 Structures
Length = 73
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 321 GKREFLVKWTDI--DEATWEPEENVD-PDLIKEFEDSQ 355
GK E+L+KW ++ TWEPEEN+D PDLI EF SQ
Sbjct: 27 GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQ 64
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 128 LKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
LKE I A D D D RTAL + G V L + G +N +D G + LH+
Sbjct: 22 LKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD-AGWSPLHI 79
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
AA + + K LL GA + + G TPL A
Sbjct: 80 AASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
EI++A G V+AV+ +G T L + + +L E G + + +D TA+H
Sbjct: 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHR 145
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEILRVTPKGNPMQFARRLGLEAVIR 247
AA + +LL A +++D G TPL LA + RV +F G I
Sbjct: 146 AAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV----EEAKFLVTQGASIYIE 201
Query: 248 NLEE 251
N EE
Sbjct: 202 NKEE 205
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G + DA D+ TA+ + G+ V +L N +D+ G T LH+A +
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN-TPLHLACDEERVEE 187
Query: 197 AKLLLELGADADVEDDRGLTPLALAK 222
AK L+ GA +E+ TPL +AK
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVAK 213
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 175 HRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPL 218
H G T LH+AAGY + + +LLL+ GAD +D GL PL
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPL 95
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 139 DVDAVDNDGR--TALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
+V+ +DGR T L +G V++L + G D++ +D GG L LH A Y V
Sbjct: 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG-LVPLHNACSYGHYEV 106
Query: 197 AKLLLELGADADVEDDRGLTPLALAKEILRV 227
+LLL+ GA + D TPL A RV
Sbjct: 107 TELLLKHGACVNAMDLWQFTPLHEAASKNRV 137
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G +V+ + D T L + + VL + G +N DS G TALH AA
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ-TALHRAALAGHLQT 295
Query: 197 AKLLLELGADADVEDDRGLTPLALAKE-ILRVTPKGNPMQ 235
+LLL G+D + +G T + E + ++ + PM+
Sbjct: 296 CRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMR 335
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G DV A D G L G +L + G +N D T LH AA + V
Sbjct: 81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ-FTPLHEAASKNRVEV 139
Query: 197 AKLLLELGADADVEDDRGLTPLALA-----KEILRVTPKGNP-MQFARRLGLEAVIRNLE 250
LLL GAD + + G + + +A +E L KG+ +Q AR L V + L
Sbjct: 140 CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA 199
Query: 251 EAVFEYAEVQ 260
+ + + Q
Sbjct: 200 LEIINFKQPQ 209
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 183 TALHMAAGYVKPG---VAKLLLELGADADVEDDRGLTPLALAKE 223
TALH A + P VA+LLL GA+ + ++ +TPL +A E
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 163 VRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALA- 221
V+ L E G ++N ++ GG T LH A + + +LLL GAD + G TP LA
Sbjct: 41 VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA 100
Query: 222 -----KEILRVTPKGNPMQFARRLGLEAVIRNLEEAVFEYAEVQEILEKRGKGDQLEYLV 276
K + KG + G A +E AV+ + + L KRG L
Sbjct: 101 IAGSVKLLKLFLSKGADVNECDFYGFTAF---MEAAVYGKVKALKFLYKRGANVNLRRKT 157
Query: 277 K-----WRDGG 282
K R GG
Sbjct: 158 KEDQERLRKGG 168
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 147 GRTALLFVSGLGSEACVRVLA-EAGTDLNHRDSGGGLTALHMAAGYVKP---GVAKLLLE 202
G TAL+ + G +++L E G D+N D+ G +H + LLL+
Sbjct: 168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 227
Query: 203 LGADADVEDDRGLTPLALAKE 223
GAD +V +RG TPL LA E
Sbjct: 228 HGADVNVRGERGKTPLILAVE 248
>pdb|3FDT|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 5 (Cbx5) With H3k9(Me)3 Peptide
Length = 59
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 5/52 (9%)
Query: 303 GLEYAVAEGVLGKRMGDDGKREFLVKWTDIDEA--TWEPEENVD-PDLIKEF 351
G EY V E VL +R+ G+ E+L+KW E TWEPE+N+D P+LI EF
Sbjct: 1 GEEYVV-EKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEF 50
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D G T L + LG V VL + G D+N G T LH+AA
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN-ATGNTGRTPLHLAAWA 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPL 218
+ ++LL+ GAD + +D G T
Sbjct: 91 DHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D G T LH+AA + ++LL+ GAD +
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGH-TPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 211 DDRGLTPLALA 221
+ G TPL LA
Sbjct: 77 GNTGRTPLHLA 87
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGG 180
EI+E +G DV+A N GRT L + V VL + G D+N +D G
Sbjct: 61 EIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 136 DGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAG-YVKP 194
+G D + +AL G V++L + G D+N D GG L+ G +VK
Sbjct: 74 NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK- 132
Query: 195 GVAKLLLELGADADVEDDRGLTPLALA 221
K+LLE GAD +E D G + LA
Sbjct: 133 -CVKMLLESGADPTIETDSGYNSMDLA 158
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 136 DGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAG-YVKP 194
+G D + +AL G V++L + G D+N D GG L+ G +VK
Sbjct: 58 NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK- 116
Query: 195 GVAKLLLELGADADVEDDRGLTPLALA 221
K+LLE GAD +E D G + LA
Sbjct: 117 -CVKMLLESGADPTIETDSGYNSMDLA 142
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 136 DGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAG-YVKP 194
+G D + +AL G V++L + G D+N D GG L+ G +VK
Sbjct: 56 NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK- 114
Query: 195 GVAKLLLELGADADVEDDRGLTPLALA 221
K+LLE GAD +E D G + LA
Sbjct: 115 -CVKMLLESGADPTIETDSGYNSMDLA 140
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G ++D D RT L+ + V+ L +AG ++ +D+ G T LH+AA V
Sbjct: 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKGHYEV 92
Query: 197 AKLLLELG-ADADVEDDRGLTPLALAKEILRV 227
+ LL G D + +DD G TP+ A E V
Sbjct: 93 VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 128 LKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAG-TDLNHRDSGGGLTALH 186
+K +I+AG VD D +G T L + G V+ L G D+N +D GG T +
Sbjct: 60 VKYLIKAG--ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG-WTPMI 116
Query: 187 MAAGYVKPGVAKLLLELGADADVEDD 212
A Y + KLLL G+D ++ D+
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIRDN 142
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G D++ DN+ L + + G +L A DL H + G + LH+AA +
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDC 192
Query: 197 AKLLLELGADADVEDDRGLTPLALA 221
L L +D +++ G TPL A
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCA 217
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G VDA G T L S G+ V+ L + D+N + + G + LH AA +
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDI 359
Query: 197 AKLLLELGADADVEDDRGLTPLALAKEI 224
LLL+ GA + G TPLA+AK +
Sbjct: 360 VTLLLKNGASPNEVSSDGTTPLAIAKRL 387
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 181 GLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
G T LH+AA Y K VA+LLLE A + GLTPL +A
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 186
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 175 HRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKE 223
H + G T LH+AA + VA+ LL+ G A+ E +G+TPL LA +
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 254
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 140 VDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAA--GYVKPGVA 197
V+A D +T L + +G V++L E + N + G T LH+AA G+V+ +A
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVLA 131
Query: 198 KLLLELGADADVEDDRGLTPLALAKEILRV 227
LLE A +G TPL +A + +V
Sbjct: 132 --LLEKEASQACMTKKGFTPLHVAAKYGKV 159
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 146 DGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGA 205
+G T L + R L + G N +S G+T LH+AA + LLL A
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGHAEMVALLLSKQA 269
Query: 206 DADVEDDRGLTPLALAKE 223
+ ++ + GLTPL L +
Sbjct: 270 NGNLGNKSGLTPLHLVAQ 287
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 175 HRDSGG--GLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEILRVTPKGN 232
H ++ G GLT LH+A + + KLLL G G TPL +A K N
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA-------KQN 223
Query: 233 PMQFARRL 240
++ AR L
Sbjct: 224 QVEVARSL 231
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 128 LKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHM 187
LKE I A D D D RTAL + G V L + G +N +D G + LH+
Sbjct: 22 LKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD-AGWSPLHI 79
Query: 188 AAGYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
AA + K LL GA + + G TPL A
Sbjct: 80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 117 WTXXXXXXXXXLKEIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLN 174
W+ EI++A G V+AV+ +G T L + + +L E G + +
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 175 HRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEILRVTPKGNPM 234
+D TA+H AA + +LL A +++D G TPL LA + RV
Sbjct: 134 AKDHYDA-TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV----EEA 188
Query: 235 QFARRLGLEAVIRNLEE 251
+F G I N EE
Sbjct: 189 KFLVTQGASIYIENKEE 205
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G + DA D+ TA+ + G+ V +L N +D+ G T LH+A +
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN-TPLHLACDEERVEE 187
Query: 197 AKLLLELGADADVEDDRGLTPLALAK 222
AK L+ GA +E+ TPL +AK
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVAK 213
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 137 GRDVDAVD-NDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPG 195
G D+DAVD GR+ L+ S + V++L + G ++N + G +ALH A+G
Sbjct: 139 GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS-SALHSASGRGLLP 197
Query: 196 VAKLLLELGADADVEDDRGLTPLALAKE 223
+ + L+ GAD+ +++ TPL +A+
Sbjct: 198 LVRTLVRSGADSSLKNCHNDTPLMVARS 225
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 139 DVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAK 198
D++A + DG TAL + V++L E G D++ D G + L A + +
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 199 LLLELGADADVE-----------DDRGLTPL 218
LLL+ GA+ + + RGL PL
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPL 198
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 163 VRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALA- 221
V+ L E G ++N ++ GG T LH A + + +LLL GAD + G TP LA
Sbjct: 21 VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80
Query: 222 -----KEILRVTPKGNPMQFARRLGLEAVIRNLEEAVFEYAEVQEILEKRGKGDQLEYLV 276
K + KG + G A +E AV+ + + L KRG L
Sbjct: 81 IAGSVKLLKLFLSKGADVNECDFYGFTAF---MEAAVYGKVKALKFLYKRGANVNLRRKT 137
Query: 277 K-----WRDGG 282
K R GG
Sbjct: 138 KEDQERLRKGG 148
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 147 GRTALLFVSGLGSEACVRVLA-EAGTDLNHRDSGGGLTALHMAAGYVKP---GVAKLLLE 202
G TAL+ + G +++L E G D+N D+ G +H + LLL+
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 203 LGADADVEDDRGLTPLALAKE 223
GAD +V +RG TPL LA E
Sbjct: 208 HGADVNVRGERGKTPLILAVE 228
>pdb|2D9U|A Chain A, Solution Structure Of The Chromo Domain Of Chromobox
Homolog 2 From Human
Length = 74
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 302 AGLEYAVAEGVLGKRMGDDGKREFLVKWT--DIDEATWEPEENV-DPDLIKEFEDSQSDG 358
+G + AE +L KR+ GK E+LVKW +WEPEEN+ DP L+ F+ + +
Sbjct: 6 SGEQVFAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEK 64
Query: 359 AV 360
V
Sbjct: 65 EV 66
>pdb|3I91|A Chain A, Crystal Structure Of Human Chromobox Homolog 8 (Cbx8) With
H3k9 Peptide
pdb|3I91|B Chain B, Crystal Structure Of Human Chromobox Homolog 8 (Cbx8) With
H3k9 Peptide
Length = 54
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 309 AEGVLGKRMGDDGKREFLVKWTDIDE--ATWEPEENV-DPDLIKEFEDSQ 355
AE +L +R+ G+ E+LVKW + +TWEPEEN+ D L+ FE+ +
Sbjct: 6 AEALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERE 54
>pdb|2EPB|A Chain A, Solution Structure Of Chromo Domain 2 In Chromodomain-
Helicase-Dna-Binding Protein 6
Length = 68
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 325 FLVKWTDI--DEATWEPEENVDPDLIKEFEDSQ 355
+LVKW + +E+TWE EE+VDP +KEFE Q
Sbjct: 35 YLVKWCSLPYEESTWELEEDVDPAKVKEFESLQ 67
>pdb|3I90|A Chain A, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With
H3k27 Peptide
pdb|3I90|B Chain B, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With
H3k27 Peptide
Length = 51
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 309 AEGVLGKRMGDDGKREFLVKWTD--IDEATWEPEENV-DPDLIKEFE 352
AE ++ +R+ G+ E+LVKW I +TWEPEEN+ D LI FE
Sbjct: 5 AESIIKRRI-RKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFE 50
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+ +D G T LH+AA V KLLLE GAD + +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGS-TPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 211 DDRGLTPL 218
D G T
Sbjct: 69 DKFGKTAF 76
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGG 180
I +G DV A D +G T L + G V++L EAG D+N +D G
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
>pdb|3H91|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
pdb|3H91|B Chain B, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
Length = 54
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 309 AEGVLGKRMGDDGKREFLVKWT--DIDEATWEPEENV-DPDLIKEFEDSQ 355
AE +L KR+ GK E+LVKW +WEPEEN+ DP L+ F+ +
Sbjct: 6 AECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 54
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 137 GRDVDAVD--NDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKP 194
G DV+ V+ D T L+ + S L + G ++N DS G LH A
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAG-RGPLHHATILGHT 281
Query: 195 GVAKLLLELGADADVEDDRGLTPLALAKE 223
G+A L L+ GAD D G PL +A E
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAME 310
>pdb|3GV6|A Chain A, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With
H3k9 Peptide
Length = 58
Score = 37.4 bits (85), Expect = 0.015, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 309 AEGVLGKRMGDDGKREFLVKWTD--IDEATWEPEENV-DPDLIKEFEDSQSD 357
AE ++ +R+ G+ E+LVKW I +TWEPEEN+ D LI FE + +
Sbjct: 6 AESIIKRRI-RKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERE 56
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 145 NDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELG 204
+DG L S +E +R+L E G D+N+ + G LTALH A + K L+E G
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLL-ERGADINYANVDG-LTALHQACIDDNVDMVKFLVENG 96
Query: 205 ADADVEDDRGLTPLALA 221
A+ + D+ G PL A
Sbjct: 97 ANINQPDNEGWIPLHAA 113
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 171 TDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
D+ H SGG TALH+AA V KLL++ D +++D G TPL A
Sbjct: 191 NDVRHAKSGG--TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G D++ + DG TAL + V+ L E G ++N D+ G + LH AA +
Sbjct: 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP-LHAAASCGYLDI 121
Query: 197 AKLLLELGADADVEDDRGLTPL 218
A+ L+ GA + G TPL
Sbjct: 122 AEYLISQGAHVGAVNSEGDTPL 143
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 147 GRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGAD 206
G TAL + G +++L +A D+N +D G T LH AA + K ++L+E D
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCD 257
Query: 207 ADVEDDRGLTPLALAKE 223
+ + G T +A E
Sbjct: 258 MEAVNKVGQTAFDVADE 274
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 137 GRDVDAVD--NDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKP 194
G DV+ V+ D T L+ + S L + G ++N DS G LH A
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAG-RGPLHHATILGHT 281
Query: 195 GVAKLLLELGADADVEDDRGLTPLALAKE 223
G+A L L+ GAD D G PL +A E
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAME 310
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 137 GRDVDAVD--NDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKP 194
G DV+ V+ D T L+ + S L + G ++N DS G LH A
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAG-RGPLHHATILGHT 281
Query: 195 GVAKLLLELGADADVEDDRGLTPLALAKE 223
G+A L L+ GAD D G PL +A E
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAME 310
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N D G LT LH+AA + ++LL+ GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVG-LTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 211 DDRGLTPLAL 220
D G TPL L
Sbjct: 77 DAIGETPLHL 86
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 191
I +G DV+A D G T L + V VL + G D+N D+ G T LH+ A Y
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE-TPLHLVAMY 90
Query: 192 VKPGVAKLLLELGADADVEDDRGLTPL 218
+ ++LL+ GAD + +D G T
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 130 EIIEA--GDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGG 180
EI+E +G DV+A+D G T L V+ G V VL + G D+N +D G
Sbjct: 61 EIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 198 KLLLELGADADVEDDRGLTPLALAK-----EILRVTPKG----NPMQFARRLGLEAVIRN 248
++L+ GAD + ED GLTPL LA EI+ V K N + L V
Sbjct: 31 RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLV--- 87
Query: 249 LEEAVFEYAEVQEILEKRG 267
A++ + E+ E+L K G
Sbjct: 88 ---AMYGHLEIVEVLLKHG 103
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 172 DLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKE 223
++N + S G TAL +A + + V K LL AD +V+DD G T L A E
Sbjct: 174 NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACE 225
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 147 GRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLEL-GA 205
G+TAL+ G V+ L D+N +D G TAL A + +A LLL +
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGS-TALMCACEHGHKEIAGLLLAVPSC 241
Query: 206 DADVEDDRGLTPLALA 221
D + D G T L +A
Sbjct: 242 DISLTDRDGSTALMVA 257
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 139 DVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAK 198
D+DA +DG T L+ + L E + L + D+N D G +ALH AA A
Sbjct: 7 DLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAV 65
Query: 199 LLLELGADADVEDDRGLTPLALA 221
+LL+ GA+ D+++++ TPL LA
Sbjct: 66 VLLKNGANKDMQNNKEETPLFLA 88
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+ +D G T LH+AA V KLLLE GAD +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGS-TPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 211 DDRGLTPL 218
D G T
Sbjct: 87 DKFGKTAF 94
>pdb|2K28|A Chain A, Solution Nmr Structure Of The Chromo Domain Of The
Chromobox Protein Homolog 4
Length = 60
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 303 GLEYAVAEGVLGKRMGDDGKREFLVKWTDIDEA--TWEPEENV-DPDLIKEFEDSQ 355
G E+ A + K+ G+ E+LVKW TWEPEEN+ DP L+ F++ +
Sbjct: 1 GSEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRE 56
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 151 LLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE 210
LL + G + VR+L G D+N +D G T LH+AA + ++LL+ GAD + +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDG-YTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 211 DDRGLTPL 218
D G T
Sbjct: 65 DKFGKTAF 72
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGG 180
I +G DV+A D DG T L + G V VL +AG D+N +D G
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
>pdb|2K1B|A Chain A, Solution Nmr Structure Of The Chromo Domain Of The
Chromobox Protein Homolog 7
Length = 73
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 300 YEAGLEYAVAEGVLGKRMGDDGKREFLVKWTDI--DEATWEPEENV-DPDLIKEFEDSQ 355
Y G + E + KR+ GK E+LVKW +TWEPEE++ DP L+ +E+ +
Sbjct: 15 YFQGEQVFAVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE 72
>pdb|1KNA|A Chain A, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Dimethyllysine 9.
pdb|1KNE|A Chain A, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Trimethyllysine 9
pdb|1Q3L|A Chain A, Chromodomain Of Hp1 Complexed With Histone H3 Tail
Containing Monomethyllysine 9
Length = 69
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 306 YAVAEGVLGKRMGDDGKREFLVKWTDIDEA--TWEPEENVD-PDLIKEFEDSQSD 357
YAV E ++ +R+ G E+ +KW E TWEPE N+D DLI+++E S+ D
Sbjct: 17 YAV-EKIIDRRV-RKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEASRKD 69
>pdb|2KVM|A Chain A, Solution Structure Of The Cbx7 Chromodomain In Complex
With A H3k27me2 Peptide
Length = 74
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 303 GLEYAVAEGVLGKRMGDDGKREFLVKWTDI--DEATWEPEENV-DPDLIKEFEDSQ 355
G + E + KR+ GK E+LVKW +TWEPEE++ DP L+ +E+ +
Sbjct: 10 GEQVFAVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE 64
>pdb|3I8Z|A Chain A, Crystal Structure Of Human Chromobox Homolog 4 (Cbx4)
Length = 55
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 305 EYAVAEGVLGKRMGDDGKREFLVKWTDIDEA--TWEPEENV-DPDLIKEFEDSQ 355
E+ A + K+ G+ E+LVKW TWEPEEN+ DP L+ F++ +
Sbjct: 1 EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRE 54
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 147 GRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGAD 206
G L F + +GSE VR+L E G D+ +DS G T LH+ A + L
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLS 179
Query: 207 AD----------VEDDRGLTPLALA 221
D V +++GLTP LA
Sbjct: 180 YDGGDHLKSLELVPNNQGLTPFKLA 204
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G ++D + T L ACV+ L E+G D+N G + LH A +
Sbjct: 124 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASEEL 181
Query: 197 AKLLLELGADADVEDDRGLTPLAL 220
A LL++ GAD ++ G P+ L
Sbjct: 182 ACLLMDFGADTQAKNAEGKRPVEL 205
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 139 DVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAK 198
D++ D+ G + L + G A V +L G +N + G T LH+AA + + +
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQ 89
Query: 199 LLLELGADADVEDDRGLTPLALA 221
LL+ AD + ++ G PL A
Sbjct: 90 KLLQYKADINAVNEHGNVPLHYA 112
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 139 DVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAK 198
D++ D+ G + L + G A V +L G +N + G T LH+AA + + +
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQ 84
Query: 199 LLLELGADADVEDDRGLTPLALA 221
LL+ AD + ++ G PL A
Sbjct: 85 KLLQYKADINAVNEHGNVPLHYA 107
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAG-YVKPG 195
G D + + +AL S G V +L E D+N D GG L+ G +VK
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVK-- 116
Query: 196 VAKLLLELGADADVEDDRGLTPLALA 221
+ LL GAD E D G TP+ LA
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLA 142
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAG-YVKPG 195
G D + + +AL S G V +L E D+N D GG L+ G +VK
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK-- 116
Query: 196 VAKLLLELGADADVEDDRGLTPLALA 221
+ LL GAD E D G TP+ LA
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLA 142
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 141 DAVDNDGRTALLFVSGLGSEACVRVLAE--AGTDLNHRDSGGGLTALHMAAGYVKPGVAK 198
D D+ G T +G+ V+ L + DLN + + G+T LH+A G V++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQ 124
Query: 199 LLLELGADADVEDDRGLTPLALAKEI 224
L+E GA ++D PL A +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASV 150
>pdb|2L12|A Chain A, Solution Nmr Structure Of The Chromobox Protein 7 With
H3k9me3
pdb|2L1B|A Chain A, Solution Nmr Structure Of The Chromobox Protein Cbx7 With
H3k27me3
Length = 56
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 309 AEGVLGKRMGDDGKREFLVKWTDI--DEATWEPEENV-DPDLIKEFEDSQ 355
E + KR+ GK E+LVKW +TWEPEE++ DP L+ +E+ +
Sbjct: 7 VESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE 55
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 141 DAVDNDGRTALLFVSGLGSEACVRVLAE--AGTDLNHRDSGGGLTALHMAAGYVKPGVAK 198
D D+ G T +G+ V+ L + DLN + + G+T LH+A G V++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQ 124
Query: 199 LLLELGADADVEDDRGLTPLALAKEI 224
L+E GA ++D PL A +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASV 150
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 131 IIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAG 190
++ AG RD A RT L + G V VL + G D+N +D +TALH A
Sbjct: 53 LLRAGVSRD--ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK-MTALHWATE 109
Query: 191 YVKPGVAKLLLELGADADVE 210
+ V +LL++ GAD +
Sbjct: 110 HNHQEVVELLIKYGADVHTQ 129
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 147 GRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGAD 206
G + L + G + VL AG + R + T LHMAA + ++LL+ GAD
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 207 ADVEDDRGLTPLALAKE 223
+ +D +T L A E
Sbjct: 93 VNAKDMLKMTALHWATE 109
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 141 DAVDNDGRTALLFVSGLGSEACVRVLAE--AGTDLNHRDSGGGLTALHMAAGYVKPGVAK 198
D D+ G T +G+ V+ L + DLN + + G+T LH+A G V++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQ 124
Query: 199 LLLELGADADVEDDRGLTPLALAKEI 224
L+E GA ++D PL A +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASV 150
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 144 DNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLEL 203
D G T L++ G V +L + G +N ++ G TALH A V +LLL
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGN-TALHEAVIEKHVFVVELLLLH 207
Query: 204 GADADVEDDRGLTPLALAK------EILRVTP 229
GA V + R T + A+ E+L+V P
Sbjct: 208 GASVQVLNKRQRTAVDCAEQNSKIMELLQVVP 239
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 15/161 (9%)
Query: 66 YGEVSKIIGSRALEDATGMEYLIEWKDGHAPSWVPQDYIAKDVVA----EYESPWW-TXX 120
Y EV K++ + A D + YL+EW + A+D V+ E+ P
Sbjct: 9 YREVEKLLRAVADGDLEMVRYLLEWTEEDLED-------AEDTVSAADPEFCHPLCQCPK 61
Query: 121 XXXXXXXLKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGG 180
L ++ +G G V+ DG + L + G + +L + G + R++
Sbjct: 62 CAPAQKRLAKVPASGLG--VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQ 119
Query: 181 GLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
+ LH+A V K LL+ A + +D G TPL A
Sbjct: 120 AVP-LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYA 159
>pdb|3DAF|A Chain A, The Crystal Structure Of [fe]-Hydrogenase Holoenzyme (Hmd)
From Methanocaldococcus Jannaschii Cocrystallized With
Cyanide
pdb|3DAG|A Chain A, The Crystal Structure Of [fe]-Hydrogenase Holoenzyme (Hmd)
From Methanocaldococcus Jannaschii
Length = 358
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 260 QEILEKRGKGDQLEYLVKWRDGGDNEWVKVGFIAEDLVTDYEAGLEYAVAEGVLGKRMGD 319
+E++E G+ + K R E VK A++L +A + E V K D
Sbjct: 82 KEVMEAHLSGNPESIMPKIR-----EVVKAK--AKELPKPPKACIHLVHPEDVGLKVTSD 134
Query: 320 DGKREFLVKWTDIDEATWEPEENVDPDLIKEFEDSQSDGAVLLNENHI 367
D RE V+ DI TW P+ N PD+IK+F D+ +GA++ + I
Sbjct: 135 D--RE-AVEGADI-VITWLPKGNKQPDIIKKFADAIPEGAIVTHACTI 178
>pdb|2DNT|A Chain A, Solution Structure Of Rsgi Ruh-064, A Chromo Domain From
Human Cdna
Length = 78
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 302 AGLEYAVAEGVLGKRMGDDGKREFLVKWT--DIDEATWEPEENV 343
A E E ++ KR GK E+LV+W D ++ TWEPE+++
Sbjct: 9 ASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHL 52
>pdb|2B0J|A Chain A, The Crystal Structure Of The Apoenzyme Of The
Iron-Sulfur-Cluster-Free Hydrogenase (Hmd)
pdb|3F47|A Chain A, The Crystal Structure Of [fe]-Hydrogenase (Hmd) Holoenzyme
From Methanocaldococcus Jannaschii
Length = 358
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 260 QEILEKRGKGDQLEYLVKWRDGGDNEWVKVGFIAEDLVTDYEAGLEYAVAEGVLGKRMGD 319
+E++E G+ + K R E VK A++L +A + E V K D
Sbjct: 82 KEVMEAHLSGNPESIMPKIR-----EVVKAK--AKELPKPPKACIHLVHPEDVGLKVTSD 134
Query: 320 DGKREFLVKWTDIDEATWEPEENVDPDLIKEFEDSQSDGAVLLNENHI 367
D RE V+ DI TW P+ N PD+IK+F D+ +GA++ + I
Sbjct: 135 D--RE-AVEGADI-VITWLPKGNKQPDIIKKFADAIPEGAIVTHACTI 178
>pdb|3F46|A Chain A, The Crystal Structure Of C176a Mutated [fe]-Hydrogenase
(Hmd) Holoenzyme From Methanocaldococcus Jannaschii
pdb|3H65|A Chain A, The Crystal Structure Of C176a Mutated [fe]-Hydrogenase
(Hmd) Holoenzyme In Complex With
Methylenetetrahydromethanopterin
Length = 358
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 260 QEILEKRGKGDQLEYLVKWRDGGDNEWVKVGFIAEDLVTDYEAGLEYAVAEGVLGKRMGD 319
+E++E G+ + K R E VK A++L +A + E V K D
Sbjct: 82 KEVMEAHLSGNPESIMPKIR-----EVVKAK--AKELPKPPKACIHLVHPEDVGLKVTSD 134
Query: 320 DGKREFLVKWTDIDEATWEPEENVDPDLIKEFEDSQSDGAVLLNENHI 367
D RE V+ DI TW P+ N PD+IK+F D+ +GA++ + I
Sbjct: 135 D--RE-AVEGADI-VITWLPKGNKQPDIIKKFADAIPEGAIVTHAATI 178
>pdb|2RSN|A Chain A, Solution Structure Of The Chromodomain Of Chp1 In Complex
With H3k9me3 Peptide
Length = 75
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 309 AEGVLGKRMGDDGKREFLVKWTDID--EATWEPEENV 343
E +L R+ +G E+ +KW D + TWEPE+N+
Sbjct: 24 VEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 162 CVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE--DDRGLTPLA 219
++VL E G D+N D G L +H+A V+ G ++ L A++D+ D RGLTPL
Sbjct: 89 TLKVLVEHGADVNVPDGTGALP-IHLA---VQEGHTAVVSFLAAESDLHRRDARGLTPLE 144
Query: 220 LA 221
LA
Sbjct: 145 LA 146
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 162 CVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVE--DDRGLTPLA 219
++VL E G D+N D G L +H+A V+ G ++ L A++D+ D RGLTPL
Sbjct: 83 TLKVLVEHGADVNVPDGTGALP-IHLA---VQEGHTAVVSFLAAESDLHRRDARGLTPLE 138
Query: 220 LA 221
LA
Sbjct: 139 LA 140
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 181 GLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEILRV 227
G+TALH A + K L++ G + + D G TPL A V
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV 116
>pdb|3G7L|A Chain A, Chromodomain Of Chp1 In Complex With Histone H3k9me3
Peptide
Length = 61
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 309 AEGVLGKRMGDDGKREFLVKWTDID--EATWEPEENV 343
E +L R+ +G E+ +KW D + TWEPE+N+
Sbjct: 10 VEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 46
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 147 GRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGAD 206
GRTAL V LG+ R L G + + +D G +H AA + + LLE AD
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTG-FAVIHDAARAGQLDTLQTLLEFQAD 95
Query: 207 ADVEDDRGLTPLALAKE 223
++ED+ G PL LA +
Sbjct: 96 VNIEDNEGNLPLHLAAK 112
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 181 GLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALA 221
G+TALH A + K L++ G + + D G TPL A
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 99 VPQDYIAKDVVAEYESPWWTXXXXXXXXXLKEIIEAGDGRDVDAVDNDGRTALLFVSGLG 158
+P +Y+A+ + ++P L+E ++ G V+ +D G TAL + G
Sbjct: 61 IPSNYVAEQAES-IDNPLHEAAKRGNLSWLRECLDNRVG--VNGLDKAGSTALYWACHGG 117
Query: 159 SEACVRVL-AEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGADADVED 211
+ V L + +LN ++ G TALH AA + +LLL GA D+ +
Sbjct: 118 HKDIVEXLFTQPNIELNQQNKLGD-TALHAAAWKGYADIVQLLLAKGARTDLRN 170
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G ++D + T L ACV+ L E+G D+N G + LH +
Sbjct: 180 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEEL 237
Query: 197 AKLLLELGADADVEDDRGLTPLAL 220
A LL++ GAD ++ G P+ L
Sbjct: 238 ACLLMDFGADTQAKNAEGKRPVEL 261
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 147 GRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGAD 206
GRTAL V LG+ R L G + + +D G +H AA + LLE AD
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTG-FAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 207 ADVEDDRGLTPLALAKE 223
++ED+ G PL LA +
Sbjct: 96 VNIEDNEGNLPLHLAAK 112
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 147 GRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGAD 206
GRTAL V LG+ R L G + + +D G +H AA + LLE AD
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTG-FAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 207 ADVEDDRGLTPLALAKE 223
++ED+ G PL LA +
Sbjct: 96 VNIEDNEGNLPLHLAAK 112
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 176 RDSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEI 224
+ +G G TALH KLLL A ++ ++ G TPL +AK +
Sbjct: 200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 248
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 181 GLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEI 224
G+TALH A + L+ GA+ + D G TPL A
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC 97
>pdb|4HAE|A Chain A, Crystal Structure Of The Cdyl2-Chromodomain
Length = 81
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 294 EDLVTDYEAGLEYAVAEGVLGKRMGDDGKREFLVKWTDI--DEATWEPEENV 343
E+L +G Y V E ++ KR GK E+L++W E TWEPE ++
Sbjct: 12 ENLYFQGASGDLYEV-ERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHL 62
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 147 GRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGAD 206
GRTAL V LG+ R L G + + +D G +H AA + LLE AD
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGN-AVIHDAARAGFLDTLQTLLEFQAD 95
Query: 207 ADVEDDRGLTPLALAKE 223
++ED+ G PL LA +
Sbjct: 96 VNIEDNEGNLPLHLAAK 112
>pdb|3KYE|A Chain A, Crystal Structure Of RoadblockLC7 DOMAIN FROM STREPTOMYCES
Avermitilis
pdb|3KYE|B Chain B, Crystal Structure Of RoadblockLC7 DOMAIN FROM STREPTOMYCES
Avermitilis
pdb|3KYE|C Chain C, Crystal Structure Of RoadblockLC7 DOMAIN FROM STREPTOMYCES
Avermitilis
pdb|3KYE|D Chain D, Crystal Structure Of RoadblockLC7 DOMAIN FROM STREPTOMYCES
Avermitilis
Length = 150
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 132 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLA 167
I GDG DV V + + LLFVS GS C+ VLA
Sbjct: 83 IRFGDGGDVRQVVVELDSTLLFVSTAGSGTCLAVLA 118
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G DV+ GR L + + G + L G D+N D +T L A
Sbjct: 25 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH-ITPLLSAVYEGHVSC 83
Query: 197 AKLLLELGADADVEDDRGLTPL 218
KLLL GAD V+ GLT L
Sbjct: 84 VKLLLSKGADKTVKGPDGLTAL 105
>pdb|2EE1|A Chain A, Solution Structures Of The Chromo Domain Of Human
Chromodomain Helicase-Dna-Binding Protein 4
Length = 64
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 305 EYAVAEGVLGKRMGDDGKREFLVKWTDI--DEATWEPE--ENVDPDLIKE 350
E+ + +L + G +L+KW D+ D+A+WE E E D DL K+
Sbjct: 10 EWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQ 59
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 147 GRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGVAKLLLELGAD 206
GRTAL V LG+ R L G + + +D G +H AA + LLE AD
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTG-FAVIHDAARAGFLDTLQTLLENQAD 95
Query: 207 ADVEDDRGLTPLALAKE 223
++ED+ G PL LA +
Sbjct: 96 VNIEDNEGNLPLHLAAK 112
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 139 DVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY-----VK 193
D++ + G AL+ + G V++L E G + + G TAL A G +
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157
Query: 194 PGVAKLLLELGADADVEDDRGLTPLALAKE 223
+ KLL+E GAD ++D+ G T + A +
Sbjct: 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQ 187
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 181 GLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKE 223
G TALH AA Y +P KLLL+ A ++ G T L +A++
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 137 GRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGYVKPGV 196
G DV+ GR L + + G + L G D+N D +T L A
Sbjct: 30 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK-HHITPLLSAVYEGHVSC 88
Query: 197 AKLLLELGADADVEDDRGLT 216
KLLL GAD V+ GLT
Sbjct: 89 VKLLLSKGADKTVKGPDGLT 108
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 181 GLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKE 223
G TALH AA Y +P KLLL+ A ++ G T L +A++
Sbjct: 226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,532,510
Number of Sequences: 62578
Number of extensions: 559683
Number of successful extensions: 2045
Number of sequences better than 100.0: 150
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1508
Number of HSP's gapped (non-prelim): 388
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)