Query 016434
Match_columns 389
No_of_seqs 254 out of 1767
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 13:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.9 5.1E-08 1.7E-12 76.6 13.5 102 117-252 3-105 (110)
2 2i68_A Protein EMRE; transmemb 98.9 4.9E-09 1.7E-13 85.4 7.4 71 317-387 34-105 (137)
3 2i68_A Protein EMRE; transmemb 98.8 1.5E-08 5.1E-13 82.6 8.0 102 117-252 3-105 (137)
4 3b5d_A Multidrug transporter E 98.7 7.1E-08 2.4E-12 75.8 9.5 71 318-388 35-106 (110)
5 3arc_L Photosystem II reaction 14.9 2E+02 0.0068 16.8 3.5 25 108-132 11-35 (37)
6 4dx5_A Acriflavine resistance 9.0 1E+03 0.035 25.1 9.2 51 327-377 885-935 (1057)
7 4dx5_A Acriflavine resistance 7.5 9.6E+02 0.033 25.3 8.1 52 326-377 351-402 (1057)
8 2v50_A Multidrug resistance pr 7.2 1E+03 0.035 25.1 8.2 52 326-377 351-402 (1052)
9 3arc_T Photosystem II reaction 6.7 3.3E+02 0.011 15.5 2.1 15 353-367 15-29 (32)
10 3ne5_A Cation efflux system pr 6.1 9.9E+02 0.034 25.2 7.4 53 326-378 890-942 (1054)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.87 E-value=5.1e-08 Score=76.61 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016434 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (389)
Q Consensus 117 g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (389)
.+++++++.++........|...+ .. +. +..+.+.++..+++.++.
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s~~-~~-------------------------------~~--~~~~~~~~~~~~~~~~~~ 48 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFSEG-FT-------------------------------RL--WPSVGTIICYCASFWLLA 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-cc-------------------------------hH--HHHHHHHHHHHHHHHHHH
Confidence 467778888888888888886321 10 11 122456666678888999
Q ss_pred HHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434 197 QGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (389)
Q Consensus 197 ~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~ 252 (389)
+++++.|.+.+..+ ..+.|+++++++++++||++++.+++|+.++++|++++...+
T Consensus 49 ~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999 899999999999999999999999999999999999998754
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.85 E-value=4.9e-09 Score=85.41 Aligned_cols=71 Identities=8% Similarity=0.165 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHhh-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434 317 YTSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 387 (389)
Q Consensus 317 ~~g~~~~~l~~~l~~~al~~~~a~~~s~~-~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~ 387 (389)
.+++++++++|.++++++++.+++++..+ ..+.|+++.++++++|||++++.+++|.++|++|++++.+.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35668899999999999999999999999 899999999999999999999999999999999999988654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.78 E-value=1.5e-08 Score=82.57 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016434 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (389)
Q Consensus 117 g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (389)
.+++++++.++-.....+.|... ++ . + .+..+.++++..+++.++.
T Consensus 3 ~~l~Ll~ail~ev~~~~~lK~s~-g~----------------------------~---~--~~~~~l~i~~~~ls~~l~~ 48 (137)
T 2i68_A 3 PYIYLGGAILAEVIGTTLMKFSE-GF----------------------------T---R--LWPSVGTIICYCASFWLLA 48 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHC----------------------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cc----------------------------c---h--HHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777531 00 0 0 0123466667788889999
Q ss_pred HHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434 197 QGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (389)
Q Consensus 197 ~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~ 252 (389)
+++++.+++.+..+ ..+.|++++++++++++|++++.+++|++++++|++++...+
T Consensus 49 ~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999 899999999999999999999999999999999999998754
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.71 E-value=7.1e-08 Score=75.78 Aligned_cols=71 Identities=8% Similarity=0.169 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhccCChhHHHhh-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434 318 TSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 388 (389)
Q Consensus 318 ~g~~~~~l~~~l~~~al~~~~a~~~s~~-~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~~ 388 (389)
.++++.++++.++.+++|+.+.+.+-.+ ..+.|+++.++++++|||++++.+++|.++|++|+++..+.++
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~~ 106 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 5567788899999999999999999988 8999999999999999999999999999999999999987543
No 5
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=14.92 E-value=2e+02 Score=16.77 Aligned_cols=25 Identities=4% Similarity=0.197 Sum_probs=17.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHhHH
Q 016434 108 QVMELGMLLEWAVLVSPFFFWGTAM 132 (389)
Q Consensus 108 ~~~~~~~~~g~l~l~~a~~~~~~~~ 132 (389)
+..+..-.+|.++.+..+++++..+
T Consensus 11 ELNRTSLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 11 ELNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHHHHHhhhhc
Confidence 3345556788888888888887665
No 6
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=9.04 E-value=1e+03 Score=25.14 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=33.5
Q ss_pred HHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 016434 327 YGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTV 377 (389)
Q Consensus 327 ~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi 377 (389)
|.+.....+........++...--+.+.+.+..++|..++...++|.++++
T Consensus 885 ~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~ 935 (1057)
T 4dx5_A 885 FLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 935 (1057)
T ss_dssp HHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 333344455555555555555555566667777889999999999877654
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=7.46 E-value=9.6e+02 Score=25.33 Aligned_cols=52 Identities=10% Similarity=0.195 Sum_probs=31.2
Q ss_pred HHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 016434 326 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTV 377 (389)
Q Consensus 326 ~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi 377 (389)
.+.+.+..++....+....+...--++..+....++|..++...++|.++.+
T Consensus 351 v~~vl~~~~~s~~~~li~~~~ip~~~~~~~~~l~~~g~~ln~~sl~gl~~~i 402 (1057)
T 4dx5_A 351 VFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAI 402 (1057)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHe
Confidence 3444444455455554444444444455555566789999999988876544
No 8
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=7.15 E-value=1e+03 Score=25.08 Aligned_cols=52 Identities=10% Similarity=0.176 Sum_probs=29.2
Q ss_pred HHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 016434 326 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTV 377 (389)
Q Consensus 326 ~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi 377 (389)
.+.+....++.........+...--++..+....++|..++...++|.++.+
T Consensus 351 v~lvl~~~~~s~~~~li~~~~ip~s~~~~~~~l~~~g~~ln~~s~~gl~~~i 402 (1052)
T 2v50_A 351 VFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMVLAI 402 (1052)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3444444455444444444443333444455556689999998887765544
No 9
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=6.69 E-value=3.3e+02 Score=15.46 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=8.9
Q ss_pred HHHHHHHHhCCCCCH
Q 016434 353 ASIFGFLYLGETFSP 367 (389)
Q Consensus 353 a~i~~~~~~ge~~~~ 367 (389)
++++-.++|+|+|..
T Consensus 15 giiFFAI~FRePPri 29 (32)
T 3arc_T 15 ALFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHHTSCCCCC
T ss_pred HHHHHhhhhcCCCCC
Confidence 344555667887753
No 10
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=6.10 E-value=9.9e+02 Score=25.20 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=34.2
Q ss_pred HHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 016434 326 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVV 378 (389)
Q Consensus 326 ~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~ 378 (389)
-|.+.....+........++...--+.+.+....++|..++....+|.+++++
T Consensus 890 i~l~L~~~f~S~~~~l~il~~ip~~~~g~~~~l~l~g~~l~~~~~~g~i~l~G 942 (1054)
T 3ne5_A 890 IFVLLYLAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAG 942 (1054)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 34444444554445555555555555666677778899999999998876543
Done!