Query 016434
Match_columns 389
No_of_seqs 254 out of 1767
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 13:31:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016434.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016434hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 20.6 43 0.0032 18.0 2.7 24 109-132 12-35 (37)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 10.1 1.1E+02 0.0081 14.9 2.7 15 264-278 4-18 (27)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 9.1 1.2E+02 0.009 15.0 2.3 14 353-366 15-28 (30)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 7.6 3.4E+02 0.025 21.4 6.0 63 179-246 4-66 (248)
5 d1iwga8 f.35.1.1 (A:513-566,A: 3.1 8.9E+02 0.065 17.9 9.5 47 333-379 77-123 (222)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 3.0 8.6E+02 0.063 17.6 8.4 45 335-379 61-105 (199)
7 d1d4ba_ d.15.2.1 (A:) Cell dea 1.5 3.8E+02 0.028 18.6 0.6 13 12-24 6-18 (122)
8 d1uptb_ a.193.1.1 (B:) Golgi a 1.5 5.2E+02 0.038 15.2 1.2 20 220-239 12-31 (58)
9 d1v54b2 f.17.2.1 (B:1-90) Mito 1.4 1.1E+03 0.084 14.5 4.7 40 321-360 34-73 (90)
10 d1r3jc_ f.14.1.1 (C:) Potassiu 1.2 9.7E+02 0.071 15.0 2.4 16 233-248 67-82 (103)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.62 E-value=43 Score=18.00 Aligned_cols=24 Identities=4% Similarity=0.181 Sum_probs=17.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHhHH
Q 016434 109 VMELGMLLEWAVLVSPFFFWGTAM 132 (389)
Q Consensus 109 ~~~~~~~~g~l~l~~a~~~~~~~~ 132 (389)
..+..-.+|.++.+..+++|+.++
T Consensus 12 LNrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 12 LNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHh
Confidence 344556788888887778887665
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.08 E-value=1.1e+02 Score=14.88 Aligned_cols=15 Identities=20% Similarity=0.040 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHH
Q 016434 264 GEWWMLLAAQSMAVG 278 (389)
Q Consensus 264 G~~~~l~aa~~~a~~ 278 (389)
|.+..-+++++|+.|
T Consensus 4 gli~~tl~glf~aay 18 (27)
T d2e74g1 4 GLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHH
Confidence 566666677777665
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.13 E-value=1.2e+02 Score=15.01 Aligned_cols=14 Identities=21% Similarity=0.225 Sum_probs=7.2
Q ss_pred HHHHHHHHhCCCCC
Q 016434 353 ASIFGFLYLGETFS 366 (389)
Q Consensus 353 a~i~~~~~~ge~~~ 366 (389)
+.++=.++|+|+|.
T Consensus 15 ~lfffaiffreppr 28 (30)
T d2axtt1 15 ALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHTSCCCC
T ss_pred HHHHHHHHhcCCCC
Confidence 33444456666653
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=7.64 E-value=3.4e+02 Score=21.39 Aligned_cols=63 Identities=5% Similarity=-0.130 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhH
Q 016434 179 SIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLL 246 (389)
Q Consensus 179 ~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ 246 (389)
+++++|+++....+ +....+..-.-..+. ..-+.+.++.++++.+|.-+++++.=.+++..+.
T Consensus 4 K~~ll~l~~a~~~~-~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 4 KWSVLGLLGLLVGY-LVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp THHHHHHHHHHHHH-THHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 34566666544443 334444444443333 2334455566778888887777765444444443
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.08 E-value=8.9e+02 Score=17.85 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=28.7
Q ss_pred HhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 016434 333 SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVA 379 (389)
Q Consensus 333 al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g 379 (389)
-++............---+.+.+++..+.|..++....+|.++.++-
T Consensus 77 ~frS~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 77 LYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp TTCSSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 34544444443333323344556677778999999998888775543
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.04 E-value=8.6e+02 Score=17.58 Aligned_cols=45 Identities=9% Similarity=0.162 Sum_probs=22.3
Q ss_pred ccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 016434 335 TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVA 379 (389)
Q Consensus 335 ~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g 379 (389)
+...++....+...-.+...+....++|..++.....+.+++++.
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 334444444444444444444445556666666666555554433
No 7
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.53 E-value=3.8e+02 Score=18.58 Aligned_cols=13 Identities=46% Similarity=0.442 Sum_probs=7.2
Q ss_pred cccchhhhhcccc
Q 016434 12 TFNSSFLLRSSLS 24 (389)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (389)
.++++=+.|+-.+
T Consensus 6 ~l~p~sl~r~vs~ 18 (122)
T d1d4ba_ 6 ALNPSDLLRSVSN 18 (122)
T ss_dssp SSCSSSSCCCCCC
T ss_pred hcCchhhheeccc
Confidence 5555555565554
No 8
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.52 E-value=5.2e+02 Score=15.21 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=12.5
Q ss_pred HHHHHHcCCCCcHHHHHHHH
Q 016434 220 VLAALLFGESIGLVGAGGLV 239 (389)
Q Consensus 220 lla~l~l~Er~~~~~~~g~~ 239 (389)
++-+...+|..+..++++.+
T Consensus 12 LfeYMmG~E~~tlaKVi~av 31 (58)
T d1uptb_ 12 LFEYMMGRETKTMAKVITTV 31 (58)
T ss_dssp HHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHcCcchhHHHHHHHHH
Confidence 44455666777777766654
No 9
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.40 E-value=1.1e+03 Score=14.47 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHH
Q 016434 321 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLY 360 (389)
Q Consensus 321 ~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~ 360 (389)
+...+.+.+.....++.......--+.+|.+|+++=..++
T Consensus 34 I~~~V~~~~~~~~~~~~~~~~~~~~~~lEiiWTiiP~lIL 73 (90)
T d1v54b2 34 ISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIIL 73 (90)
T ss_dssp HHHHHHHHHHHHHSCSCCCCSCCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHH
Confidence 4444555555555555555444444668888888766554
No 10
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=1.23 E-value=9.7e+02 Score=15.01 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhHHh
Q 016434 233 VGAGGLVLGVIGLLLL 248 (389)
Q Consensus 233 ~~~~g~~l~~~Gv~ll 248 (389)
.++++++.++.|+.++
T Consensus 67 gr~~~~~~~~~Gi~~~ 82 (103)
T d1r3jc_ 67 GRCVAVVVMVAGITSF 82 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666666665554
Done!