BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016435
         (389 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 10/152 (6%)

Query: 6   GFRFHPTDEEIILLLTMKRRDPTGFSVRTIKEIDLYSFEPRELPCHSDIQSEEEVWYFFC 65
           GFRF+PTDEE+++    ++     FS++ I EIDLY F+P  LP  +    +E  WYFF 
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE--WYFFS 77

Query: 66  EPCYKNSESKRVHRRTKEGYWKKTGRGSNINRKYKTEVIGTKKFLSFSRDDAAAQKNTTE 125
               K     R +R    GYWK TG    I+   + + +G KK L F     A +   T 
Sbjct: 78  PRDRKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFY-IGKAPKGTKTN 134

Query: 126 WVIHEIAV-----EDSPDFKKDFVVCRLERKR 152
           W++HE  +      +      D+V+CR+ +K+
Sbjct: 135 WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 10/152 (6%)

Query: 6   GFRFHPTDEEIILLLTMKRRDPTGFSVRTIKEIDLYSFEPRELPCHSDIQSEEEVWYFFC 65
           GFRF+PTDEE+++    ++     FS++ I EIDLY F+P  LP  +    +E  WYFF 
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE--WYFFS 80

Query: 66  EPCYKNSESKRVHRRTKEGYWKKTGRGSNINRKYKTEVIGTKKFLSFSRDDAAAQKNTTE 125
               K     R +R    GYWK TG    I+   + + +G KK L F     A +   T 
Sbjct: 81  PRDRKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFY-IGKAPKGTKTN 137

Query: 126 WVIHEIAV-----EDSPDFKKDFVVCRLERKR 152
           W++HE  +      +      D+V+CR+ +K+
Sbjct: 138 WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 169


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 15/157 (9%)

Query: 6   GFRFHPTDEEIILLLTMKRRDPTGFSVRTIKEIDLYSFEPRELPCHSDIQSEEEVWYFFC 65
           GFRFHPTD+E++     ++       V  I E+DLY F+P +LP  +   + E  WYFF 
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE--WYFFT 75

Query: 66  EPCYKNSESKRVHRRTKEGYWKKTGRGSNINRKYKTEVIGTKKFLSFSRDDAAAQKNTTE 125
               K     R +R    GYWK TG    +  + +T  +G KK L F     A +   T+
Sbjct: 76  PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRT--LGIKKALVFY-AGKAPRGVKTD 132

Query: 126 WVIHEIAVEDSPDFKK----------DFVVCRLERKR 152
           W++HE  + D+               D+V+CRL  K+
Sbjct: 133 WIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169


>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
           Glucose
          Length = 485

 Score = 28.5 bits (62), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 133 VEDSPD-FKKDFVV--CRLERKREKKTLGVVSTKRKREKTLGVVSSKRKRDKKLGVSTSD 189
           +ED+ D F+KDF V     ERK  ++   ++ T+  R    G+ +  +KR  K G   +D
Sbjct: 358 LEDTDDIFQKDFGVKTTLPERKLIRRLCELIGTRAARLAVCGIAAICQKRGYKTGHIAAD 417

Query: 190 G 190
           G
Sbjct: 418 G 418


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,355,235
Number of Sequences: 62578
Number of extensions: 459716
Number of successful extensions: 725
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 8
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)