Query 016435
Match_columns 389
No_of_seqs 134 out of 873
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.8E-52 6.1E-57 380.9 12.4 148 1-153 13-170 (174)
2 1ut7_A No apical meristem prot 100.0 5.7E-52 2E-56 376.5 11.7 149 1-154 15-168 (171)
3 1ldd_A APC2WHB, anaphase promo 15.3 32 0.0011 26.9 -0.1 27 3-30 36-63 (74)
4 2h80_A STAR-related lipid tran 11.5 1.1E+02 0.0039 24.2 2.1 16 256-271 61-76 (81)
5 3cpr_A Dihydrodipicolinate syn 9.2 82 0.0028 29.8 0.5 18 3-21 118-135 (304)
6 4dox_A Coat protein; all helix 9.0 1.3E+02 0.0044 28.2 1.8 22 4-25 156-177 (226)
7 3fkr_A L-2-keto-3-deoxyarabona 8.8 1.2E+02 0.004 28.9 1.5 20 2-22 109-131 (309)
8 2ehh_A DHDPS, dihydrodipicolin 8.2 1E+02 0.0035 28.9 0.8 18 3-21 102-119 (294)
9 2ojp_A DHDPS, dihydrodipicolin 8.1 1E+02 0.0036 28.8 0.8 18 3-21 103-120 (292)
10 1f6k_A N-acetylneuraminate lya 8.1 1E+02 0.0036 28.8 0.8 18 3-21 106-123 (293)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.8e-52 Score=380.90 Aligned_cols=148 Identities=33% Similarity=0.643 Sum_probs=132.2
Q ss_pred CCCCCCceECCChHHHHHHHHhhhcCCCCCCcceeEecCCCCCCCCCCCCCCCCCCCCcEEEEEeccccccCCCCcceee
Q 016435 1 MDSLVGFRFHPTDEEIILLLTMKRRDPTGFSVRTIKEIDLYSFEPRELPCHSDIQSEEEVWYFFCEPCYKNSESKRVHRR 80 (389)
Q Consensus 1 m~LPpGfRF~PTDEELI~~YL~~Ki~G~plp~~~I~evDVY~~ePweLP~~~~~~g~d~eWYFFs~r~rK~~~G~R~~R~ 80 (389)
+.|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+..+ +.+||||+++.+|+++|.|++|+
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g--~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG--AREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC--SSEEEEEEECCC-----CCSCEE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC--CceEEEEeccccccCCCCCceee
Confidence 4799999999999999999999999999999999999999999999999887654 78999999999999999999999
Q ss_pred ccCceEEecCCcceeeeCCCceEEEEEEEEeeccccCCCCCCCcCeEEEEEEeCCCCC----------CCCCeEEEEEEE
Q 016435 81 TKEGYWKKTGRGSNINRKYKTEVIGTKKFLSFSRDDAAAQKNTTEWVIHEIAVEDSPD----------FKKDFVVCRLER 150 (389)
Q Consensus 81 tggG~WKatG~~K~I~~~~gg~vIG~KKtLvFy~gr~p~~g~KT~WvMhEYsL~~~~~----------~~~d~VLCRIyk 150 (389)
|++||||++|++++|... |.+||+||+|+||.+++| ++.||+|+||||+|..... ..++|||||||+
T Consensus 91 t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p-~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAP-RGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp ETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTT-SCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred cCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCC-CCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 999999999999999876 389999999999999999 9999999999999988642 257999999999
Q ss_pred eCC
Q 016435 151 KRE 153 (389)
Q Consensus 151 K~~ 153 (389)
|+.
T Consensus 168 K~~ 170 (174)
T 3ulx_A 168 KKN 170 (174)
T ss_dssp SCC
T ss_pred cCC
Confidence 875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=5.7e-52 Score=376.46 Aligned_cols=149 Identities=34% Similarity=0.623 Sum_probs=129.4
Q ss_pred CCCCCCceECCChHHHHHHHHhhhcCCCCCCcceeEecCCCCCCCCCCCCCCCCCCCCcEEEEEeccccccCCCCcceee
Q 016435 1 MDSLVGFRFHPTDEEIILLLTMKRRDPTGFSVRTIKEIDLYSFEPRELPCHSDIQSEEEVWYFFCEPCYKNSESKRVHRR 80 (389)
Q Consensus 1 m~LPpGfRF~PTDEELI~~YL~~Ki~G~plp~~~I~evDVY~~ePweLP~~~~~~g~d~eWYFFs~r~rK~~~G~R~~R~ 80 (389)
+.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+.+..+ +.+||||+++.+|+++|.|++|+
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g--~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC--SSEEEEEEECCC-------CCEE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC--CccEEEEeccccccCCCCccccc
Confidence 4799999999999999999999999999999999999999999999999876554 78999999999999999999999
Q ss_pred ccCceEEecCCcceeeeCCCceEEEEEEEEeeccccCCCCCCCcCeEEEEEEeCCCCC-----CCCCeEEEEEEEeCCc
Q 016435 81 TKEGYWKKTGRGSNINRKYKTEVIGTKKFLSFSRDDAAAQKNTTEWVIHEIAVEDSPD-----FKKDFVVCRLERKREK 154 (389)
Q Consensus 81 tggG~WKatG~~K~I~~~~gg~vIG~KKtLvFy~gr~p~~g~KT~WvMhEYsL~~~~~-----~~~d~VLCRIykK~~~ 154 (389)
|++||||++|+++.|...+ .+||+||+|+||.++++ ++.||+|+||||+|..... ..++|||||||+|+..
T Consensus 93 t~~G~Wk~tG~~k~I~~~~--~~vG~KktLvFy~g~~p-~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGKAP-KGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp ETTEEEEEEEEEEEEEETT--EEEEEEEEEEEEESSTT-SCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred CCCCEEeccCCCceEEecC--cEEEEEEEEEEEcCcCC-CCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999999864 99999999999999999 9999999999999998742 2689999999998864
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=15.32 E-value=32 Score=26.90 Aligned_cols=27 Identities=7% Similarity=-0.015 Sum_probs=22.5
Q ss_pred CCCCceECC-ChHHHHHHHHhhhcCCCCC
Q 016435 3 SLVGFRFHP-TDEEIILLLTMKRRDPTGF 30 (389)
Q Consensus 3 LPpGfRF~P-TDEELI~~YL~~Ki~G~pl 30 (389)
.|.|+.|.. |++||-. ||..++....+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 477999998 9999988 89999877654
No 4
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=11.47 E-value=1.1e+02 Score=24.25 Aligned_cols=16 Identities=50% Similarity=0.653 Sum_probs=14.8
Q ss_pred CchhhHHHHHhHHHhh
Q 016435 256 EDSVEAETRRLAELNR 271 (389)
Q Consensus 256 ~~~~~~~~~~~~~~~~ 271 (389)
.|+.++++|||.-||+
T Consensus 61 ~d~l~sL~RRl~tLN~ 76 (81)
T 2h80_A 61 KDLVEPLCRRLNTLNK 76 (81)
T ss_dssp STTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7889999999999986
No 5
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=9.17 E-value=82 Score=29.84 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=14.5
Q ss_pred CCCCceECCChHHHHHHHH
Q 016435 3 SLVGFRFHPTDEEIILLLT 21 (389)
Q Consensus 3 LPpGfRF~PTDEELI~~YL 21 (389)
+|| |.|.||+++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 566 558899999999874
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=8.99 E-value=1.3e+02 Score=28.19 Aligned_cols=22 Identities=36% Similarity=0.291 Sum_probs=16.4
Q ss_pred CCCceECCChHHHHHHHHhhhc
Q 016435 4 LVGFRFHPTDEEIILLLTMKRR 25 (389)
Q Consensus 4 PpGfRF~PTDEELI~~YL~~Ki 25 (389)
+-|..+.||++|+|.+=..+++
T Consensus 156 ~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 156 PSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TTCCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCCCHHHHHHHHHHHHH
Confidence 3489999999999998766654
No 7
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=8.75 E-value=1.2e+02 Score=28.86 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=15.1
Q ss_pred CCCCCce---ECCChHHHHHHHHh
Q 016435 2 DSLVGFR---FHPTDEEIILLLTM 22 (389)
Q Consensus 2 ~LPpGfR---F~PTDEELI~~YL~ 22 (389)
-+|| |. |.||+++|+.||-.
T Consensus 109 v~~P-yy~~~~~~s~~~l~~~f~~ 131 (309)
T 3fkr_A 109 AMPP-YHGATFRVPEAQIFEFYAR 131 (309)
T ss_dssp ECCS-CBTTTBCCCHHHHHHHHHH
T ss_pred EcCC-CCccCCCCCHHHHHHHHHH
Confidence 3567 44 78999999997643
No 8
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=8.22 E-value=1e+02 Score=28.93 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=14.1
Q ss_pred CCCCceECCChHHHHHHHH
Q 016435 3 SLVGFRFHPTDEEIILLLT 21 (389)
Q Consensus 3 LPpGfRF~PTDEELI~~YL 21 (389)
+|| |.|.||+++|+.||-
T Consensus 102 ~~P-~y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 102 VVP-YYNKPTQRGLYEHFK 119 (294)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 456 448899999999874
No 9
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=8.10 E-value=1e+02 Score=28.84 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=14.0
Q ss_pred CCCCceECCChHHHHHHHH
Q 016435 3 SLVGFRFHPTDEEIILLLT 21 (389)
Q Consensus 3 LPpGfRF~PTDEELI~~YL 21 (389)
+|| |.|.||+++|+.||-
T Consensus 103 ~~P-~y~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 103 VTP-YYNRPSQEGLYQHFK 120 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 456 448899999999773
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=8.05 E-value=1e+02 Score=28.83 Aligned_cols=18 Identities=11% Similarity=-0.166 Sum_probs=14.0
Q ss_pred CCCCceECCChHHHHHHHH
Q 016435 3 SLVGFRFHPTDEEIILLLT 21 (389)
Q Consensus 3 LPpGfRF~PTDEELI~~YL 21 (389)
+||- .|.||+++|+.||-
T Consensus 106 ~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 48899999999774
Done!