BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016437
(389 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8DHG3|SYW_THEEB Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain
BP-1) GN=trpS PE=3 SV=1
Length = 330
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/336 (56%), Positives = 227/336 (67%), Gaps = 39/336 (11%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
++SGVQPTGS+HLGNYLGAI+NW+A Q YE F +VDLHAIT+P+D +L+ T AA
Sbjct: 1 MLSGVQPTGSLHLGNYLGAIRNWVAGQAEYENYFCVVDLHAITVPHDPAELAANTYTVAA 60
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID + A++FVQSHV AH EL WLL+ TP+ WL MIQFKEK+ K GENV
Sbjct: 61 LYLACGIDPAHATIFVQSHVSAHAELTWLLNCITPLNWLEDMIQFKEKAVKQ-GENVAAG 119
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++A RVNYL+ + I
Sbjct: 120 LLDYPVLMAADILLYDADLVPVGEDQKQHLELTRDIAARVNYLFARNQ--------PPIL 171
Query: 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLE 320
K+PEPLIP AGARVMSLTDG KMSKS PS+ SRINLLD D I KIKRCKTD GL
Sbjct: 172 KLPEPLIPKAGARVMSLTDGTKKMSKSDPSELSRINLLDSPDEIRKKIKRCKTDPIRGLA 231
Query: 321 FDNLERPECNNLLSIYQLISGKTKGV------------------------------RYEE 350
FD+ +RPE NNLLS+YQ+++GKTK RY E
Sbjct: 232 FDDPDRPEANNLLSLYQVLTGKTKEAVAAECADMGWGQFKPLLTDAVIATLEPIQQRYNE 291
Query: 351 IMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 386
IM+D +YL +L G +AA +A+ATL V A GF
Sbjct: 292 IMADPSYLKDLLKKGQEQAATVANATLERVKLAFGF 327
>sp|Q8YXE4|SYW_NOSS1 Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=trpS PE=3 SV=1
Length = 335
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/339 (54%), Positives = 228/339 (67%), Gaps = 40/339 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
K+R++SGVQPTG++HLGNYLGAI+NW+ +Q+ Y+ F +VDLHAIT+P++ L+ T
Sbjct: 3 KQRVLSGVQPTGNLHLGNYLGAIRNWVEIQDQYDNFFCVVDLHAITVPHNPATLAADTYA 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
AA+YLACGID +++FVQSHV AH EL W L+ TP+ WL MIQFKEK+ K GENV
Sbjct: 63 IAALYLACGIDLKYSNIFVQSHVSAHSELAWFLNCITPLNWLQDMIQFKEKAVKQ-GENV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
G LL YPVLMA+DILLYQ+D VPVGEDQKQHLELTR++ R N+ + K
Sbjct: 122 GAGLLIYPVLMAADILLYQADKVPVGEDQKQHLELTRDIVNRFNHQFAKDK--------- 172
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317
+ K+PEPLI GARVMSLTDG KMSKS PS+ SRINLLDP D IANKIKRCKTD
Sbjct: 173 PVMKLPEPLIRKEGARVMSLTDGTRKMSKSDPSELSRINLLDPPDQIANKIKRCKTDPVK 232
Query: 318 GLEFDNLERPECNNLLSIYQLISGKTK------------------------------GVR 347
GL FD+ ERPECNNLL++Y L+SGK K +
Sbjct: 233 GLTFDDPERPECNNLLTLYMLLSGKKKEEVAAECQDMGWGQFKPLFTETAINALKPIQEK 292
Query: 348 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 386
Y+EI +D YL+ VL DG KA +A+ TL +V A+G+
Sbjct: 293 YQEITADKGYLESVLRDGREKAETVANQTLADVKAALGY 331
>sp|Q7TTU9|SYW_SYNPX Tryptophan--tRNA ligase OS=Synechococcus sp. (strain WH8102)
GN=trpS PE=3 SV=1
Length = 337
Score = 341 bits (874), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 172/342 (50%), Positives = 230/342 (67%), Gaps = 40/342 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
+ R++SGVQPTG++HLGN+LGAI+NW+ LQ++++T +VDLHAIT+P+D +L+ T
Sbjct: 3 RPRVLSGVQPTGALHLGNWLGAIRNWVDLQDTHDTFVCVVDLHAITVPHDPARLADDTLN 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
TAA+YLACG+D + S+F+QS V AH EL WLL+ TP+ WL +MIQFKEK+ K G+NV
Sbjct: 63 TAALYLACGMDPQRCSIFIQSQVAAHSELCWLLNCVTPLNWLERMIQFKEKAVKQ-GDNV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRKWKKLGGRG 256
V LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A +R+N +G +
Sbjct: 122 SVGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRINARFGSEE-------- 173
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
+ KVP+PLI GARVMSLTDG SKMSKS P++ SRI LLDP ++I KIKR KTD
Sbjct: 174 RPVLKVPKPLILKEGARVMSLTDGRSKMSKSDPNEGSRITLLDPPELITKKIKRAKTDPK 233
Query: 317 AGLEFDNLERPECNNLLSIYQLISGKTK------------------------------GV 346
GLEF N +RPE +NLL +Y ++SGK +
Sbjct: 234 RGLEFSNPDRPETDNLLGLYAILSGKGREAAADECADMGWGQFKPLLADAAVAALEPIQA 293
Query: 347 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 388
R++E+M+D LD+VLA G +A +A+A+L V A+GF +
Sbjct: 294 RHKELMADRVELDRVLAKGRDQAESVANASLERVRDALGFAK 335
>sp|Q7TV34|SYW_PROMM Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain MIT
9313) GN=trpS PE=3 SV=1
Length = 337
Score = 339 bits (869), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 173/341 (50%), Positives = 228/341 (66%), Gaps = 40/341 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
+ R++SGVQPTG++HLGN+LGAI+NW+ LQ+S++T +VDLHAIT+P+D ++L++ +
Sbjct: 3 RPRVLSGVQPTGALHLGNWLGAIRNWVDLQSSHDTYVCVVDLHAITVPHDPERLAEESLS 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
TAA+YLACG+D S+FVQS V AH EL WLL+ TP+ WL +MIQFKEKS K G+NV
Sbjct: 63 TAALYLACGMDPDLCSIFVQSQVSAHSELCWLLNCVTPLNWLERMIQFKEKSVKQ-GDNV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRKWKKLGGRG 256
V LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A +R+N +G +
Sbjct: 122 SVGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRINARFGSEE-------- 173
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
+ KVP+PLI GARVMSL+DG SKMSKS P++ SRI LLDP ++I KIKR KTD
Sbjct: 174 KPVLKVPDPLIIKEGARVMSLSDGRSKMSKSDPNEGSRITLLDPPELITKKIKRAKTDPQ 233
Query: 317 AGLEFDNLERPECNNLLSIYQLISGKTKGV------------------------------ 346
GL+F N +RPE +NLL IY ++SG+ +
Sbjct: 234 MGLQFGNPDRPEADNLLGIYAILSGRGRDAAAQECAEMGWGTFKPLLADATVSALEPIQH 293
Query: 347 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
RY+++M D L +VL G +A + A ATL V QA+GFL
Sbjct: 294 RYQQLMGDRIELIRVLDQGRTRAEETAQATLQRVRQALGFL 334
>sp|Q7NCG8|SYW_GLOVI Tryptophan--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=trpS PE=3 SV=1
Length = 336
Score = 334 bits (856), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 172/347 (49%), Positives = 221/347 (63%), Gaps = 44/347 (12%)
Query: 71 VASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQ 130
+ S+ KRI+SG QPTG +HLGNYLGA++NW++ Q Y++ F +VDLHA+T+P + +
Sbjct: 1 MPDDSTAPKRILSGAQPTGQLHLGNYLGAVRNWVSEQRQYDSYFCVVDLHALTVPQEAAE 60
Query: 131 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 190
L ATR TAA+YLACGID +++VFVQSHV AH EL WL + TPI WL +MIQFKEK+
Sbjct: 61 LRAATRRTAALYLACGIDPERSTVFVQSHVSAHTELTWLFNCLTPINWLERMIQFKEKAI 120
Query: 191 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 250
K GE VG+ L YPVL A+DILLY+ VPVGEDQ+QHLELTR++A R N Y
Sbjct: 121 KL-GEEVGIGLFDYPVLQAADILLYEPHLVPVGEDQRQHLELTRDIARRFNDRY------ 173
Query: 251 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310
G +VPE LI GARVMSL DG SKMSKS PSD SR+NLLD + + +KIKR
Sbjct: 174 ------GESLRVPEMLIRKEGARVMSLQDGTSKMSKSDPSDLSRLNLLDAPEKLRDKIKR 227
Query: 311 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGV------------------------ 346
K+D+ GL+FD RPEC NLL+IYQL+SG++
Sbjct: 228 AKSDAVMGLKFDP-ARPECTNLLTIYQLLSGESPEAVEARFADAGFGRFKPILADLVIEY 286
Query: 347 ------RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
RY+ I +S YL+ +L +GA +A+ +A TL + MG L
Sbjct: 287 LRPIRERYDAIAGESGYLEGILREGALRASKVAGLTLERIRDRMGLL 333
>sp|P73655|SYW_SYNY3 Tryptophan--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=trpS PE=3 SV=2
Length = 337
Score = 333 bits (854), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 177/340 (52%), Positives = 224/340 (65%), Gaps = 39/340 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
K RI+SGVQPTG++HLGNYLGAI++W+ Q Y+ F +VDLHAIT+P++ Q L++ T
Sbjct: 3 KPRILSGVQPTGNLHLGNYLGAIRSWVEQQQHYDNFFCVVDLHAITVPHNPQTLAQDTLT 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
AA+YLACGID +++FVQSHV AH EL WLL+ TP+ WL +MIQFKEK+ K GENV
Sbjct: 63 IAALYLACGIDLQYSTIFVQSHVAAHSELAWLLNCVTPLNWLERMIQFKEKAVKQ-GENV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
V LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++ R+N K G
Sbjct: 122 SVGLLDYPVLMAADILLYDADKVPVGEDQKQHLELTRDIVIRIN--------DKFGREDA 173
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317
+ K+PEPLI GARVMSL DG KMSKS S+ SRINLLDP ++I K+K+CKTD
Sbjct: 174 PVLKLPEPLIRKEGARVMSLADGTKKMSKSDESELSRINLLDPPEMIKKKVKKCKTDPQR 233
Query: 318 GLEFDNLERPECNNLLSIYQLISGKTK------------------------------GVR 347
GL FD+ ERPEC+NLL++Y L+S +TK +
Sbjct: 234 GLWFDDPERPECHNLLTLYTLLSNQTKEAVAQECAEMGWGQFKPLLTETAIAALEPIQAK 293
Query: 348 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
Y EI++D LD+++ G AKA+ A TL V A+GFL
Sbjct: 294 YAEILADRGELDRIIQAGNAKASQTAQQTLARVRDALGFL 333
>sp|Q7VBM9|SYW_PROMA Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=trpS PE=3 SV=1
Length = 339
Score = 328 bits (840), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 173/343 (50%), Positives = 226/343 (65%), Gaps = 40/343 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KKR++SGVQPTG+IH+GN+LGAI+NW++LQN Y+T +VDLHAIT+P+D QQL + T
Sbjct: 3 KKRVLSGVQPTGAIHIGNWLGAIRNWVSLQNEYDTYVCVVDLHAITVPHDPQQLKENTLR 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
TAA+Y+ACG+D K S+FVQSH+ AH EL WLL+ TP+ W+ +MIQFKEK+ K G+NV
Sbjct: 63 TAALYVACGMDPKKCSIFVQSHISAHSELCWLLNCVTPLNWMERMIQFKEKAIKQ-GDNV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRKWKKLGGRG 256
+ LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A +RVN +
Sbjct: 122 SIGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRVN--------SRFNKES 173
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
+I K+P+PLI G ++MSL DG KMSKS P++ SRI LLD ++I KIKR KTDS
Sbjct: 174 KSILKIPKPLIMKEGGKIMSLIDGNMKMSKSDPNENSRIALLDSPEIIKKKIKRAKTDSF 233
Query: 317 AGLEFDNLERPECNNLLSIYQLIS----------------GKTKGV-------------- 346
GLEFDN +RPE NNLL IY ++S GK K +
Sbjct: 234 LGLEFDNNQRPEANNLLGIYSMVSNQNREAVQKEFSNIGWGKFKPILTDAIIESLNPIQQ 293
Query: 347 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
+Y ++ D L+ +L G KA I++ TL V A+GFL +
Sbjct: 294 KYYSLIKDKTELNNILNKGYIKANTISNQTLKRVRNALGFLDK 336
>sp|Q7V286|SYW_PROMP Tryptophan--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=trpS PE=3 SV=1
Length = 338
Score = 325 bits (832), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 166/342 (48%), Positives = 222/342 (64%), Gaps = 41/342 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KKRI+SGVQPTG +H+GN+LGAI NW+ LQ +ET +VDLHAIT YDT+QLSK T
Sbjct: 4 KKRILSGVQPTGDLHIGNWLGAINNWVELQEKHETFLCVVDLHAITTEYDTKQLSKNTLS 63
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
TAA+Y+ACGI+ S+FVQS + AH EL W+L+ TPI W+ +MIQFKEKS + G NV
Sbjct: 64 TAALYIACGINPKICSIFVQSQISAHSELCWILNCMTPINWMERMIQFKEKSIQQGN-NV 122
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRKWKKLGGRG 256
+ L YP+LMA+DILLY +D+VPVGEDQKQHLEL +++A +R+N +G +
Sbjct: 123 SIGLFDYPILMAADILLYDADYVPVGEDQKQHLELAKDIAQQRINAKFGKEE-------- 174
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
I K+P+P+I G+++MSL DG KMSKS ++ SRINLLD ++I KIKR K+DS
Sbjct: 175 -NILKIPQPIIMKKGSKIMSLNDGSKKMSKSDINEGSRINLLDTPEIITKKIKRAKSDSY 233
Query: 317 AGLEFDNLERPECNNLLSIYQLISGK---------------------TKGV--------- 346
G+EF+N ERPE NLL IY L+SGK T+ +
Sbjct: 234 MGMEFNNPERPESRNLLMIYSLLSGKEVSELENDLSQTGWGTFKKIFTEQIIESLKPIQE 293
Query: 347 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 388
RY+ +++D L+K+L G KA +A+ TL+ V +GF
Sbjct: 294 RYQVLINDPHELNKILIQGKEKAEVVANKTLSRVKSELGFFE 335
>sp|Q92HR1|SYW_RICCN Tryptophan--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=trpS PE=3 SV=1
Length = 330
Score = 291 bits (744), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 157/341 (46%), Positives = 208/341 (60%), Gaps = 42/341 (12%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK ++SGVQ TGS+HLGNYLGAIKNW+ +Q Y FF+ DLHAIT+ +L+ +
Sbjct: 1 MKKTVLSGVQATGSLHLGNYLGAIKNWVKMQEEYNCFFFLADLHAITVDIKPSELNNSIM 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
E A+YLA G++ K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K+ + E
Sbjct: 61 EVLAVYLAAGLNPDKVTIFAQSMVKEHTELAWLLNCVTPLGWLKRMTQFKDKA-GSDQEK 119
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
+ L +YPVLMA+DIL+Y++D VPVGEDQKQHLELTR++A +N RK+ K
Sbjct: 120 ACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVIN-----RKFNK----- 169
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
I KVPE LI G R+MSL DGL KMSKS SD SRINL D D+I KIK+ KTD
Sbjct: 170 -EILKVPEVLISETGTRIMSLRDGLKKMSKSDISDFSRINLKDDNDLIHQKIKKAKTDHL 228
Query: 317 AGLEFDNLERPECNNLLSIYQLISGKT----------KGV-------------------- 346
+ + +D RPE +NLL IY +S ++ +G
Sbjct: 229 SFVSYDQETRPEISNLLDIYSSLSEESLEQIIGNYQNQGFAKFKEDLAEIIITNLQPIRD 288
Query: 347 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
+Y E+M+D YL K+L GA KA A T+N V + GF+
Sbjct: 289 KYLELMNDKEYLLKILHKGAEKARIRASETVNEVKEQFGFV 329
>sp|Q9ZD76|SYW_RICPR Tryptophan--tRNA ligase OS=Rickettsia prowazekii (strain Madrid E)
GN=trpS PE=3 SV=1
Length = 330
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 209/341 (61%), Gaps = 42/341 (12%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK ++SGVQ TG++HLGNYLG+I+NWI +Q Y FF+ DLHAIT+ T +L+ A
Sbjct: 1 MKKTVLSGVQTTGALHLGNYLGSIRNWIKMQEEYNCFFFLADLHAITIDIKTSELNDAIM 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
E AIYLA G++ K ++F QS V+ HVEL WLL+ TP+GWL +M QFK+K+ A +
Sbjct: 61 EVLAIYLAAGLNPDKVTIFAQSMVKEHVELSWLLNCVTPLGWLKRMTQFKDKAGSAQCK- 119
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
+ L YP+LMA+DIL+Y++D VPVGEDQKQHLELTR++AE +N R++ K
Sbjct: 120 ACLGLFAYPILMAADILIYKADIVPVGEDQKQHLELTRDIAEVIN-----RRFDK----- 169
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
I KVP+ LI G R+MSL +GL KMSKS SD SRINL D D+I KIK+ KTD
Sbjct: 170 -EILKVPDILISETGTRIMSLRNGLKKMSKSDISDFSRINLKDSNDLIHQKIKKAKTDHL 228
Query: 317 AGLEFDNLERPECNNLLSIY----------------------------QLISGKTKGVRY 348
+ + ++ RPE +NLL IY ++I + +R
Sbjct: 229 SFISYNKKTRPEISNLLDIYKSFSKESIEKIIDNYQNQGFAKFKEDLAEIIITNLQPIRN 288
Query: 349 E--EIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
+ E+M+D YL K+L GA KA A T+N V + GF+
Sbjct: 289 KCLELMNDKEYLLKILHKGAQKARIRASETVNEVKKQFGFI 329
>sp|Q68WR2|SYW_RICTY Tryptophan--tRNA ligase OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=trpS PE=3 SV=1
Length = 330
Score = 285 bits (728), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 210/343 (61%), Gaps = 46/343 (13%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK ++SGVQ TG++HLGNYLG+IKNW+ +Q Y FF+ DLHAIT+ T +L+ +
Sbjct: 1 MKKTVLSGVQTTGALHLGNYLGSIKNWVKMQEEYNCFFFLADLHAITIDIKTSELNNSIM 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
E AIYLA G++ K ++F QS V+ H EL WLL+ TP+GWL +M QFK+ KAG +
Sbjct: 61 EVLAIYLAAGLNPDKVTIFAQSMVKEHAELSWLLNCVTPLGWLKRMTQFKD---KAGSDQ 117
Query: 197 VG--VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
+ L YP+LMA+DIL+Y++D VPVGEDQKQHLELTR++AE +N R++ K
Sbjct: 118 CKACLGLFAYPILMAADILIYKADIVPVGEDQKQHLELTRDIAEVIN-----RRFDK--- 169
Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314
I KVP+ LI G R+MSL +GL KMSKS +D SRINL D D+I KIK+ KTD
Sbjct: 170 ---EILKVPDILISETGTRIMSLRNGLKKMSKSDIADFSRINLKDSNDLIYQKIKKAKTD 226
Query: 315 SSAGLEFDNLERPECNNLLSIYQLISGKT----------------------------KGV 346
+ + +D RPE +NLL IY+ +S ++ + +
Sbjct: 227 HLSFISYDKKTRPEISNLLDIYKSLSKESMEKIINNYQNQGFAKFKEDLAEIIITNLQPI 286
Query: 347 RYE--EIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
R + E+M+D YL K+L GA KA A T+N V + GF+
Sbjct: 287 RDKCLELMNDKEYLLKILHKGAEKAKIRASETVNEVKKQFGFI 329
>sp|Q4UL98|SYW_RICFE Tryptophan--tRNA ligase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=trpS PE=3 SV=1
Length = 330
Score = 285 bits (728), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 153/341 (44%), Positives = 208/341 (60%), Gaps = 42/341 (12%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK ++SGVQ TGS+HLGNYLG+I+NW+ +Q Y FF+ DLHAIT+ +L+ +
Sbjct: 1 MKKTVLSGVQATGSLHLGNYLGSIRNWVKMQEEYNCFFFLADLHAITVDIKPSELNNSIM 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
A+YLA G++ K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K+ + E
Sbjct: 61 GVLAVYLAAGLNPDKVTIFAQSMVKEHAELAWLLNCVTPLGWLKRMTQFKDKA-GSDQEK 119
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
+ L +YPVLMA+DIL+Y++D VPVGEDQKQHLELTR++A +N R++ K
Sbjct: 120 ACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVIN-----RRFDK----- 169
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
I KVPE LI G R+MSL DGL KMSKS SD SRINL D D+I KIK+ KTD
Sbjct: 170 -EILKVPEVLISETGTRIMSLRDGLKKMSKSDISDFSRINLKDDNDLIHQKIKKAKTDHL 228
Query: 317 AGLEFDNLERPECNNLLSIYQLISGKT----------KGV-------------------- 346
+ + +D RPE +NLL IY+ +S ++ +G
Sbjct: 229 SFVSYDKETRPEISNLLDIYRSLSEESLEKIINNYQNQGFSKFKEDLAEIIITNLQPIRD 288
Query: 347 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
+Y E+M+D YL K+L GA KA A T+N V + GF+
Sbjct: 289 KYLELMNDKEYLLKILHKGAEKARIRASETVNEVKEQFGFV 329
>sp|Q8R9X8|SYW_THETN Tryptophan--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=trpS PE=3
SV=1
Length = 327
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 157/339 (46%), Positives = 207/339 (61%), Gaps = 42/339 (12%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
KR+ SGVQP+G IH+GNYLGA++ ++ALQ+ Y+ F +VDLHA+T+P D +L K T E
Sbjct: 2 KRVFSGVQPSGDIHIGNYLGAMRQFVALQDDYDCFFCVVDLHALTVPQDPVELKKNTIEL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+Y+A G+D K ++FVQSHV AH EL WLL T G L++M QFKEKS G E+V
Sbjct: 62 AALYMAIGLDPKKVTLFVQSHVSAHAELAWLLQCITYFGELSRMTQFKEKSK--GKESVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
V L TYP LMA+DILLY++ +VPVGEDQKQHLELTR++A+R N R G
Sbjct: 120 VGLFTYPDLMAADILLYKTHYVPVGEDQKQHLELTRDVAQRFN------------NRFGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318
F +PEP+I GAR+MSLT+ KMSKS +R+NLLD D I KI + TDS +
Sbjct: 168 TFVIPEPMILKFGARIMSLTNPTKKMSKSDADPNNRVNLLDDPDTIYRKIMKAVTDSESE 227
Query: 319 LEFDNLERPECNNLLSIYQLISG--------KTKGVRY-------EEIMSDSA------Y 357
+ D ++P +NLL+IY L +G K KG Y E++ D Y
Sbjct: 228 IRLDWEKKPGISNLLTIYSLFTGMEVDEVVNKFKGQGYGTLKKELAEVVIDKLSVIQKNY 287
Query: 358 LD-------KVLADGAAKAADIADATLNNVYQAMGFLRR 389
D +VL +GA +A +A TL V + MG + R
Sbjct: 288 RDISEEEVLRVLKEGAERAEAVAVETLKEVKEKMGLILR 326
>sp|P0A2P2|SYW_SALTY Tryptophan--tRNA ligase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=trpS PE=3 SV=1
Length = 334
Score = 277 bits (709), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 155/342 (45%), Positives = 208/342 (60%), Gaps = 47/342 (13%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D QQL KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQQLRKATLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNGLYGD------------IF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSSAG- 318
KVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSDEPP 231
Query: 319 -LEFDNLERPECNNLLSIYQLISGKT----------------KG--------------VR 347
+ +D E+ +NLL I ++G++ KG R
Sbjct: 232 VVRYDVKEKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVAEAVSGMLSELQER 291
Query: 348 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
Y +D A+L KV+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 292 YHRFRNDEAFLQKVMKDGAEKASARAAETLKAVYEAIGFVAK 333
>sp|P0A2P3|SYW_SALTI Tryptophan--tRNA ligase OS=Salmonella typhi GN=trpS PE=3 SV=1
Length = 334
Score = 277 bits (709), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 155/342 (45%), Positives = 208/342 (60%), Gaps = 47/342 (13%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D QQL KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQQLRKATLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNGLYGD------------IF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSSAG- 318
KVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSDEPP 231
Query: 319 -LEFDNLERPECNNLLSIYQLISGKT----------------KG--------------VR 347
+ +D E+ +NLL I ++G++ KG R
Sbjct: 232 VVRYDVKEKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVAEAVSGMLSELQER 291
Query: 348 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
Y +D A+L KV+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 292 YHRFRNDEAFLQKVMKDGAEKASARAAETLKAVYEAIGFVAK 333
>sp|Q9EYY6|SYW_ENTAE Tryptophan--tRNA ligase OS=Enterobacter aerogenes GN=trpS PE=3 SV=1
Length = 334
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/345 (45%), Positives = 210/345 (60%), Gaps = 47/345 (13%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
K + SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D QQL KAT +
Sbjct: 3 KPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDPQQLRKATLD 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
T A+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 63 TLALYLACGIDPQKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENI 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N +YG
Sbjct: 122 NAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIAQRFNAIYGD----------- 170
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSS 316
IFKVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 171 -IFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSD 228
Query: 317 AG--LEFDNLERPECNNLLSIYQLISGKT----------------KG------------- 345
+ +D E+ +NLL I ++GKT KG
Sbjct: 229 EPPVVRYDLKEKAGVSNLLDILSAVTGKTIPELEQHFEGKMYGHLKGEVAEAVSGMLIDL 288
Query: 346 -VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
RY +D A+L++V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 289 QERYHRFRNDEAFLNQVMKDGAEKASARASQTLKAVYEAIGFVAK 333
>sp|P57956|SYW_PASMU Tryptophan--tRNA ligase OS=Pasteurella multocida (strain Pm70)
GN=trpS PE=3 SV=1
Length = 333
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/342 (44%), Positives = 207/342 (60%), Gaps = 45/342 (13%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
K ++SGVQP+G + +GNYLGA++ W+ +Q+ YE LF IVDLHAIT+ D + L KAT +
Sbjct: 3 KPVVLSGVQPSGELTIGNYLGALRQWVKMQDDYECLFCIVDLHAITVRQDPESLRKATLD 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
A+YLACGID K+++F+QSHV H +L W+L+ T G + +M QFK+KS + EN+
Sbjct: 63 VLALYLACGIDPEKSTIFIQSHVPEHTQLAWVLNCYTYFGEMGRMTQFKDKSAR-HAENI 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
V L TYPVLMA+DILLYQ++ VPVGEDQKQHLE+TR++A R N LYG
Sbjct: 122 NVGLFTYPVLMAADILLYQANQVPVGEDQKQHLEITRDIANRFNALYGD----------- 170
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317
+F VPEP IP AGARVMSL + KMSKS + + I LL+ +A KIKR TDS
Sbjct: 171 -LFAVPEPFIPKAGARVMSLLEPEKKMSKSDENRNNVIGLLEDPKAVAKKIKRAVTDSDE 229
Query: 318 G--LEFDNLERPECNNLLSIYQLISGKT----------------KGV------------- 346
+ +D + +NLL I ++GK+ KG
Sbjct: 230 PPVVRYDVQNKAGVSNLLDILSGVTGKSIAELETEFEGKMYGHLKGTVADEVSAMLTTLQ 289
Query: 347 -RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
R+ ++ A L+ + +GA KA + A ATL+ VYQA+GF+
Sbjct: 290 ERFHHFRNNEALLNDIAREGAQKARERAKATLDAVYQAVGFV 331
>sp|Q7MAE0|SYW_WOLSU Tryptophan--tRNA ligase OS=Wolinella succinogenes (strain ATCC
29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)
GN=trpS PE=3 SV=1
Length = 328
Score = 275 bits (704), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/341 (43%), Positives = 199/341 (58%), Gaps = 44/341 (12%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KKR+ SG+QPTG+IHLGNYLGA+KNW+ Q+ ++ +F IV+ HAIT+ D L T
Sbjct: 2 IKKRVFSGIQPTGNIHLGNYLGAVKNWVDSQDEFDNIFCIVNSHAITIKQDPALLRAKTY 61
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
E AA+ LACGID K+ +F+QS V H L W+L P+G +++M QFK+KS K +N
Sbjct: 62 ELAAVLLACGIDMKKSKLFIQSEVDEHAALAWILDCNIPMGDMSRMTQFKDKSQK-NPKN 120
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
+ + L YP LMA+DILLYQ+DFVPVGEDQKQHLELTR++AER N YG
Sbjct: 121 INIGLFNYPALMAADILLYQTDFVPVGEDQKQHLELTRDVAERFNRDYG----------- 169
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
FK+PEP+IP GAR+M L D KMSKS I LLD D I K K+ TDS
Sbjct: 170 -ETFKIPEPMIPKMGARIMGLDDPTKKMSKSEGKPNHGIALLDTPDEILKKFKKATTDSE 228
Query: 317 AGLEFDNLERPECNNLLSIYQLISGKTKGV------------------------------ 346
+ F N E+ NLL+IYQ+ +G ++ V
Sbjct: 229 NLVRF-NPEQIGIFNLLTIYQIFTGYSQEVIEAEFEGKGYGIFKVAVAEAVIEGLKPIQE 287
Query: 347 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
RY ++ + YL++VL+ GA++ IA T V + +G +
Sbjct: 288 RYAKLTKEQGYLEEVLSHGASEVRKIAQKTYKEVKERVGLI 328
>sp|Q1RIE3|SYW_RICBR Tryptophan--tRNA ligase OS=Rickettsia bellii (strain RML369-C)
GN=trpS PE=3 SV=1
Length = 328
Score = 275 bits (702), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 156/339 (46%), Positives = 209/339 (61%), Gaps = 40/339 (11%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK ++SGVQ TGS+HLGNYLG+I+NW+ +Q Y FF+ DLH+IT+ +L ++
Sbjct: 1 MKKTVLSGVQATGSLHLGNYLGSIRNWVKMQEEYNCFFFLADLHSITVDIAPSELKRSVI 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
ET AIYLA G+D +K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K+ K E
Sbjct: 61 ETLAIYLAAGLDPNKVTIFAQSMVKEHAELAWLLNCVTPLGWLKRMTQFKDKAGK-DQEK 119
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
+ L +YPVLMA+DIL+Y++D VPVGEDQKQHLELTR++A +N RK+ K
Sbjct: 120 ACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVIN-----RKFNK----- 169
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
I KVPE LI +G R+MSL DG KMSKS SD SRINL D D+I KIK+ KTD
Sbjct: 170 -EILKVPEVLIGGSGTRIMSLRDGSKKMSKSDSSDFSRINLRDDNDLIHQKIKKAKTDHL 228
Query: 317 AGLEFDNLERPECNNLLSIYQLISG-KTKGV---------------------------RY 348
+ + +D RPE +NLL IY +S K + + +Y
Sbjct: 229 SFVSYDKEARPEISNLLDIYTTLSEEKLENIIQNYEGFAKFKEDLAEIIITNLQPMRDKY 288
Query: 349 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
E+M+D YL K+L GA KA A T+N + + GF+
Sbjct: 289 LELMNDQEYLLKILHQGAEKARVRASETVNELKEQFGFV 327
>sp|Q9K8Y2|SYW_BACHD Tryptophan--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=trpS PE=3
SV=1
Length = 330
Score = 275 bits (702), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 156/343 (45%), Positives = 204/343 (59%), Gaps = 45/343 (13%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK + SG+QP+G++ LGNYLGA+K++++LQ Y F IVD HAIT+P D +L + R
Sbjct: 1 MKKTVFSGIQPSGTLTLGNYLGAMKHFVSLQEDYNCYFCIVDQHAITVPQDRLKLRENIR 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
AA+YLA GID SKA++F+QS V AH +L W++ + IG L +M QFK+KS G E
Sbjct: 61 SLAALYLAVGIDPSKATLFIQSEVPAHAQLGWMMQCVSYIGELERMTQFKDKSD--GKEA 118
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
V +LLTYP LMA+DILLY ++ VPVGEDQKQHLELTR+LAER N Y
Sbjct: 119 VSASLLTYPPLMAADILLYHTNIVPVGEDQKQHLELTRDLAERFNKKYND---------- 168
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
IF +PE IP GAR+MSL D KMSKS P+ +S I++LD + I KIK TDS
Sbjct: 169 --IFTIPEVQIPKVGARIMSLNDPSKKMSKSNPNPKSYISMLDDEKTITKKIKSAVTDSD 226
Query: 317 AGLEFDNLERPECNNLLSIYQLISGKT----------KGV-------------------- 346
++FD +P +NLLSIY L G + KG
Sbjct: 227 GIVKFDKENKPAISNLLSIYSLCKGASIEEVEAQFVGKGYGEFKESLAQVVVDTLKPIQE 286
Query: 347 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
RYE+++ S LD +L GA KA +A TL +AMG R+
Sbjct: 287 RYEQLIQ-SEELDHILDQGADKANRVARKTLEKAERAMGLGRK 328
>sp|P67587|SYW_BRUSU Tryptophan--tRNA ligase OS=Brucella suis biovar 1 (strain 1330)
GN=trpS PE=3 SV=1
Length = 355
Score = 274 bits (700), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 154/355 (43%), Positives = 213/355 (60%), Gaps = 43/355 (12%)
Query: 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKA 134
S+ K + SGVQPTG++HLGNYLGAIK W+ +Q + E ++ +VD+HA+T+ D +L ++
Sbjct: 2 STFKPLVFSGVQPTGNLHLGNYLGAIKRWVEVQKTEECIYCVVDMHALTVSPDPVELMQS 61
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
TRE A +LA GID K+ VF QS V H EL W+ + IGW+++M QFK+K+ K
Sbjct: 62 TREVTAAFLAAGIDPKKSIVFNQSRVMQHAELAWVFNCVARIGWMSRMTQFKDKAGK-DR 120
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK---- 250
EN + L YP LMA+DILLY++ VPVGEDQKQHLELTR++A++ N Y R
Sbjct: 121 ENASLGLFAYPSLMAADILLYRATAVPVGEDQKQHLELTRDIAQKFNNDYSDRIASLGVG 180
Query: 251 ---KLGGRG-GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306
K+G F + EP+I R+MSL DG KMSKS PSD SRINL+D +D I
Sbjct: 181 VDMKVGDEQVSGFFPLTEPMISGPAMRIMSLRDGTKKMSKSDPSDLSRINLIDDEDTITK 240
Query: 307 KIKRCKTDSSAGL--EFDNLE-RPECNNLLSIYQLISGKTK--------GVRYEE----- 350
KI++ KTDS GL E D LE RPE +NL+ IY +S TK G ++ +
Sbjct: 241 KIRKAKTDSD-GLPSEVDGLEGRPEADNLVGIYAALSSTTKEDVLKEFGGRQFSDLKASL 299
Query: 351 -----------------IMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 388
+++D A++D VL DG +A IA+ T+ +V +G+L+
Sbjct: 300 ADLAVARLSPITHEMRRLVADPAHIDSVLRDGGEQAGAIAEQTMRHVRDIVGWLQ 354
>sp|P67586|SYW_BRUME Tryptophan--tRNA ligase OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=trpS PE=3 SV=1
Length = 355
Score = 274 bits (700), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 154/355 (43%), Positives = 213/355 (60%), Gaps = 43/355 (12%)
Query: 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKA 134
S+ K + SGVQPTG++HLGNYLGAIK W+ +Q + E ++ +VD+HA+T+ D +L ++
Sbjct: 2 STFKPLVFSGVQPTGNLHLGNYLGAIKRWVEVQKTEECIYCVVDMHALTVSPDPVELMQS 61
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
TRE A +LA GID K+ VF QS V H EL W+ + IGW+++M QFK+K+ K
Sbjct: 62 TREVTAAFLAAGIDPKKSIVFNQSRVMQHAELAWVFNCVARIGWMSRMTQFKDKAGK-DR 120
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK---- 250
EN + L YP LMA+DILLY++ VPVGEDQKQHLELTR++A++ N Y R
Sbjct: 121 ENASLGLFAYPSLMAADILLYRATAVPVGEDQKQHLELTRDIAQKFNNDYSDRIASLGVG 180
Query: 251 ---KLGGRG-GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306
K+G F + EP+I R+MSL DG KMSKS PSD SRINL+D +D I
Sbjct: 181 VDMKVGDEQVSGFFPLTEPMISGPAMRIMSLRDGTKKMSKSDPSDLSRINLIDDEDTITK 240
Query: 307 KIKRCKTDSSAGL--EFDNLE-RPECNNLLSIYQLISGKTK--------GVRYEE----- 350
KI++ KTDS GL E D LE RPE +NL+ IY +S TK G ++ +
Sbjct: 241 KIRKAKTDSD-GLPSEVDGLEGRPEADNLVGIYAALSSTTKEDVLKEFGGRQFSDLKASL 299
Query: 351 -----------------IMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 388
+++D A++D VL DG +A IA+ T+ +V +G+L+
Sbjct: 300 ADLAVARLSPITHEMRRLVADPAHIDSVLRDGGEQAGAIAEQTMRHVRDIVGWLQ 354
>sp|P00954|SYW_ECOLI Tryptophan--tRNA ligase OS=Escherichia coli (strain K12) GN=trpS
PE=1 SV=3
Length = 334
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/342 (44%), Positives = 207/342 (60%), Gaps = 47/342 (13%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D Q+L KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LY G IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALY------------GEIF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSSAG- 318
KVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSDEPP 231
Query: 319 -LEFDNLERPECNNLLSIYQLISGKT----------------KG--------------VR 347
+ +D + +NLL I ++G++ KG R
Sbjct: 232 VVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQER 291
Query: 348 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
Y +D A+L +V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 292 YHRFRNDEAFLQQVMKDGAEKASAHASRTLKAVYEAIGFVAK 333
>sp|P67588|SYW_ECOL6 Tryptophan--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=trpS PE=3 SV=1
Length = 334
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/342 (44%), Positives = 207/342 (60%), Gaps = 47/342 (13%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D Q+L KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGD------------IF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSSAG- 318
KVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSDEPP 231
Query: 319 -LEFDNLERPECNNLLSIYQLISGKT----------------KG--------------VR 347
+ +D + +NLL I ++G++ KG R
Sbjct: 232 VVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQER 291
Query: 348 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
Y +D A+L +V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 292 YHRFRNDEAFLQQVMKDGAEKASAHASRTLKAVYEAIGFVAK 333
>sp|P67589|SYW_ECO57 Tryptophan--tRNA ligase OS=Escherichia coli O157:H7 GN=trpS PE=3
SV=1
Length = 334
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/342 (44%), Positives = 207/342 (60%), Gaps = 47/342 (13%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D Q+L KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGD------------IF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSSAG- 318
KVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSDEPP 231
Query: 319 -LEFDNLERPECNNLLSIYQLISGKT----------------KG--------------VR 347
+ +D + +NLL I ++G++ KG R
Sbjct: 232 VVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQER 291
Query: 348 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
Y +D A+L +V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 292 YHRFRNDEAFLQQVMKDGAEKASAHASRTLKAVYEAIGFVAK 333
>sp|Q9AC05|SYW_CAUCR Tryptophan--tRNA ligase OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=trpS PE=3 SV=1
Length = 344
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/339 (44%), Positives = 202/339 (59%), Gaps = 43/339 (12%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETA 139
R++SGVQP+G++HLGNYLGA+ + LQ+ +T F+ DLHAIT+ D L++ TRE A
Sbjct: 14 RVLSGVQPSGALHLGNYLGALVKFTRLQHEIDTFIFVADLHAITVWQDPAALAQQTREIA 73
Query: 140 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGV 199
A Y+A G+D KA++F QS VR H EL W+ + +GWL++M QFKEKS K E V
Sbjct: 74 AAYIASGLDPDKATIFPQSAVREHAELSWIFNCVARLGWLDRMTQFKEKSGK-HKERSSV 132
Query: 200 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 259
L TYPVL A+DIL+Y++ VPVGEDQKQHLELTR++A++ N+ +
Sbjct: 133 GLYTYPVLQAADILIYKATHVPVGEDQKQHLELTRDIAQKFNHDFNAP----------GF 182
Query: 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGL 319
F +P+PLI GARVMSL DG +KMSKS PSD SRINL D D IA K+K+ +TD
Sbjct: 183 FPLPDPLIQGPGARVMSLRDGSAKMSKSDPSDYSRINLTDTADDIAAKVKKARTDPEPLP 242
Query: 320 E-FDNL-ERPECNNLLSIYQLISGKTK------------------------------GVR 347
E + L R E +NL+ I+ ++GKTK G R
Sbjct: 243 ETIEELATRAEADNLVGIFAALAGKTKAEVLADYAGKGFGTFKPALAELAVESLAPVGER 302
Query: 348 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 386
++ D A LD +LA GA KA + A TL V + +GF
Sbjct: 303 MRGLLGDPAVLDAILAKGAEKAREAAAPTLAEVKKLVGF 341
>sp|Q83JA5|SYW_SHIFL Tryptophan--tRNA ligase OS=Shigella flexneri GN=trpS PE=3 SV=1
Length = 334
Score = 272 bits (695), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/345 (44%), Positives = 208/345 (60%), Gaps = 47/345 (13%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
K + SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D Q+L KAT +
Sbjct: 3 KPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLD 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
T A+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 63 TLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENI 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LY G
Sbjct: 122 NAGLFGYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALY------------G 169
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSS 316
IFKVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 170 EIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSD 228
Query: 317 AG--LEFDNLERPECNNLLSIYQLISGKT----------------KG------------- 345
+ +D + +NLL I ++G++ KG
Sbjct: 229 EPPVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTEL 288
Query: 346 -VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
RY +D A+L +V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 289 QERYHRFRNDEAFLQQVMKDGAEKASVHASRTLKAVYEAIGFVAK 333
>sp|Q7VIP6|SYW_HELHP Tryptophan--tRNA ligase OS=Helicobacter hepaticus (strain ATCC
51449 / 3B1) GN=trpS PE=3 SV=1
Length = 332
Score = 271 bits (694), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 149/345 (43%), Positives = 195/345 (56%), Gaps = 44/345 (12%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
S +S KKRI SG+QPTG+IHLGNYLGA+++W+ Q YE +F +V+ HAIT+ D Q+L
Sbjct: 2 SHTSSKKRIFSGIQPTGNIHLGNYLGAVRHWVDSQEQYENIFCVVNSHAITIRQDPQELQ 61
Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
T E A I LACGID K+ +F+QS + H L W+L P+G +++M QFK+KS+K
Sbjct: 62 NKTYELAGILLACGIDTKKSHLFIQSQIDEHAALAWILDCNIPMGDMSRMTQFKDKSNK- 120
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252
+N+ V L YP LMA+DILLYQ+DFVPVGEDQKQHLELTR++A R N Y
Sbjct: 121 NPKNINVGLFNYPALMAADILLYQADFVPVGEDQKQHLELTRDVAMRFNRDY-------- 172
Query: 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312
G F +PEP+IP GARVM L + SKMSKSA + I LLD DVI K K+
Sbjct: 173 ----GECFNIPEPMIPQVGARVMGLDNPQSKMSKSAQGENHAIFLLDSPDVITRKCKKAV 228
Query: 313 TDSSAGLEFDNLERPECNNLLSIYQLISGKTKGV-------------------------- 346
TDS + + FD R NLL IY++ + K++
Sbjct: 229 TDSQSNIVFDE-SRAGLYNLLCIYEIFTQKSRKSIEAEFEGKGYGHLKMALAEVIIESLR 287
Query: 347 ----RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
Y +I D Y+ VL A IA T N + +G +
Sbjct: 288 PIQQSYAKISQDKTYIQSVLTKSADSIRPIAKNTYENAKRLVGLV 332
>sp|Q8FRR3|SYW_COREF Tryptophan--tRNA ligase OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=trpS PE=3 SV=1
Length = 346
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/345 (42%), Positives = 200/345 (57%), Gaps = 43/345 (12%)
Query: 74 SSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
++ R++SG+QPT S HLGNYLGA+K WI LQNSY+ +FI DLHAIT+ + ++L
Sbjct: 9 TAQTPARVLSGIQPTADSYHLGNYLGAVKQWIDLQNSYDAFYFIPDLHAITVDQNPEELR 68
Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
T AA LA GID ++++FVQSH+ AH EL W+L+ T G ++M QFK+KS K
Sbjct: 69 ARTVSGAAQLLALGIDPERSTLFVQSHIPAHAELSWVLTCLTGFGEASRMTQFKDKSTKQ 128
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252
G E L TYP+LMA+DILLY+ VPVGEDQ+QHLELTR LAER N
Sbjct: 129 GAERTSAGLFTYPMLMAADILLYRPQLVPVGEDQRQHLELTRTLAERFN----------- 177
Query: 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312
R G +F+VPE IP +++ L + +KMSKS + + INLLD V + +IK
Sbjct: 178 -NRFGTVFEVPEGFIPEGASKIYDLQNPTAKMSKSGENPKGLINLLDDPKVSSKRIKSAV 236
Query: 313 TDSSAGLEFDNLERPECNNLLSIYQLISGKT----------KG----------------- 345
TD+ + FD +P +NLL I ++G++ KG
Sbjct: 237 TDNDGVIAFDVANKPGVSNLLVIQSALTGESVDKLVAGYEGKGYGALKTDTADALEAFTT 296
Query: 346 ---VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
+Y+E MSD A L++VLA GA +A +IA L VY +GFL
Sbjct: 297 PLRAKYDEYMSDRAELERVLAIGAERAGEIATKVLAEVYDKIGFL 341
>sp|Q8ZJF2|SYW_YERPE Tryptophan--tRNA ligase OS=Yersinia pestis GN=trpS PE=1 SV=2
Length = 342
Score = 269 bits (687), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 159/357 (44%), Positives = 209/357 (58%), Gaps = 53/357 (14%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
LS+PT S K + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 3 LSKPTV------SSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 56
Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M
Sbjct: 57 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 116
Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 243
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 117 QFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 175
Query: 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKD 302
YG IFK+PEP IP AGARVMSL D KMSKS + + I LL DPK
Sbjct: 176 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 223
Query: 303 VIANKIKRCKTDSS--AGLEFDNLERPECNNLLSIYQLISGKT----------------K 344
V+ KIKR TDS A + +D ++ +NLL I ++G++ K
Sbjct: 224 VV-KKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLK 282
Query: 345 GV--------------RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
G RY D A L V+ +GAAKA A TL VY+A+GF+
Sbjct: 283 GAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGFV 339
>sp|Q891C7|SYW_CLOTE Tryptophan--tRNA ligase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=trpS PE=3 SV=1
Length = 338
Score = 269 bits (687), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 146/340 (42%), Positives = 202/340 (59%), Gaps = 44/340 (12%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KK I SG+QP+G++ +GNY GA+KNW+ LQ+ Y + IVDLHAIT+ Q+L K T E
Sbjct: 10 KKTIFSGIQPSGNLTIGNYFGALKNWVKLQDEYNCFYCIVDLHAITVRQVPQELRKRTLE 69
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
A+Y+A G+D K ++F+QSHV AH E WLL+ T +G LN+M QFK+KS A GE++
Sbjct: 70 VLAVYIASGLDPEKNTLFIQSHVPAHTEAAWLLNCFTYLGELNRMTQFKDKSQNA-GESI 128
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
LL YPVLMA+DILLY +D VPVG DQKQHLELTR++A R N LY
Sbjct: 129 SAGLLNYPVLMAADILLYNADLVPVGNDQKQHLELTRDIATRFNNLY------------S 176
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317
FKVPEP I GAR+M L + KMSKSA + I ++DP ++I NKI R TD+
Sbjct: 177 PTFKVPEPYIGKTGARIMDLQEPKKKMSKSAENKNGYILIMDPPNIIQNKINRAVTDNEG 236
Query: 318 GLEFDNLERPECNNLLSIYQLISGKT--------KGVRYEEI------------------ 351
+ + + E+P NL++I +GK G+ Y +
Sbjct: 237 IVRYSD-EQPGVKNLMNILSTATGKNVESIEKEYAGLGYSKFKKDVAEAIIAEVEPLQKE 295
Query: 352 ----MSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
+ D +YL+KV +GA KA+ +A+ TL+ + + +GF+
Sbjct: 296 VKRYLEDKSYLEKVYKEGAQKASYVANKTLSKMKRKIGFV 335
>sp|Q81TS6|SYW_BACAN Tryptophan--tRNA ligase OS=Bacillus anthracis GN=trpS PE=3 SV=1
Length = 329
Score = 268 bits (685), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 152/339 (44%), Positives = 202/339 (59%), Gaps = 45/339 (13%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
I SG+QP+G+I LGNYLGA+K + LQN ++ F IV+ HAIT+P D QL K R AA
Sbjct: 4 IFSGIQPSGTITLGNYLGAMKQFTELQNEHDCYFCIVNQHAITVPQDPVQLRKNIRSLAA 63
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+Y+ACGID KA++FVQS V AH +L W++ S +G L +M Q+K+K+ +G ++V
Sbjct: 64 LYVACGIDPEKATLFVQSEVPAHAQLGWIMQSVAYVGELERMTQYKDKA--SGRDSVPAG 121
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
LLTYP LMA+DILLY ++ VPVG+DQKQH+ELTR+LAER N R +F
Sbjct: 122 LLTYPPLMAADILLYNTEIVPVGDDQKQHMELTRDLAERFN------------KRFREVF 169
Query: 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLE 320
+PE IP GARVMSLT+ KMSKS P+ +S I++LD I KIK TDS ++
Sbjct: 170 TIPEIRIPKVGARVMSLTEPTKKMSKSDPNPKSMISMLDEPKTIEKKIKSAVTDSEGIVK 229
Query: 321 FDNLERPECNNLLSIYQLISGKT----------KGV--------------------RYEE 350
FD +P +NLL+IY SGKT KG +Y E
Sbjct: 230 FDKENKPGISNLLTIYSSFSGKTVEEIEAMYEGKGYGDFKGDLAQVVVEAIRPIQDKYNE 289
Query: 351 IMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
++ +S LD++L GA KA +A L V AMG R+
Sbjct: 290 LI-NSPELDEILDKGAEKANRVAFKQLRKVENAMGLSRK 327
>sp|Q8Y577|SYW_LISMO Tryptophan--tRNA ligase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=trpS PE=3 SV=1
Length = 331
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/342 (44%), Positives = 200/342 (58%), Gaps = 43/342 (12%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK I SG+QP+G + LGNY+GA+K + Q+ YE + IVD HAIT+P D +L + TR
Sbjct: 1 MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTR 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
AA+YLA G+D K+++F+QS V AH + W+L IG L +M QFK+KS AG
Sbjct: 61 SLAALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKS--AGKAG 118
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
V LLTYP LMA+DILLYQ+D VPVGEDQKQH+ELTR+LAER N +
Sbjct: 119 VSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFN------------KKH 166
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
IF +PE IP GARVMSL D KMSKS + ++ I LLDP I KIK TDSS
Sbjct: 167 ADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSS 226
Query: 317 AGLEFDNLERPECNNLLSIYQLISGKT--------KGVRYEEIMSD-------------- 354
+E++ E+P +NLL+IY +I+G+T G Y + +D
Sbjct: 227 GIIEYNKEEKPGVSNLLTIYSVITGETIASIEEKYVGKGYGDFKTDLAELVVSELEPIQE 286
Query: 355 -------SAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
S LD +L GA KAA +A+ TL + +G R+
Sbjct: 287 RYYAYLKSEELDTILDAGAEKAARVANKTLKKMENGVGLGRK 328
>sp|Q71XG7|SYW_LISMF Tryptophan--tRNA ligase OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=trpS PE=3 SV=1
Length = 331
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/342 (44%), Positives = 199/342 (58%), Gaps = 43/342 (12%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK I SG+QP+G + LGNY+GA+K + Q+ YE + IVD HAIT+P D +L + TR
Sbjct: 1 MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTR 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
AA+YLA G+D KA++F+QS V AH + W+L IG L +M QFK+KS G
Sbjct: 61 SLAALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSDGKAG-- 118
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
V LLTYP LMA+DILLYQ+D VPVGEDQKQH+ELTR+LAER N +
Sbjct: 119 VSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFN------------KKH 166
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
IF +PE IP GARVMSL D KMSKS + ++ I LLDP I KIK TDSS
Sbjct: 167 ADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSS 226
Query: 317 AGLEFDNLERPECNNLLSIYQLISGKT--------KGVRYEEIMSD-------------- 354
+E++ E+P +NLL+IY +I+G+T G Y + +D
Sbjct: 227 GIIEYNKEEKPGVSNLLTIYSVITGETISTIEEKYVGKGYGDFKTDLAELVVAELEPIQE 286
Query: 355 -------SAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
S LD +L GA KAA +A+ TL + +G R+
Sbjct: 287 RYYAYLKSEELDTILDAGAEKAARVANKTLKKMENGVGLGRK 328
>sp|Q7VPB2|SYW_HAEDU Tryptophan--tRNA ligase OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=trpS PE=3 SV=1
Length = 342
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/342 (43%), Positives = 206/342 (60%), Gaps = 35/342 (10%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
K + SGVQP+G + +GNYLGA++NW+ LQ+ Y+ LF IVDLHAIT+ D L K+T +
Sbjct: 3 KSIVFSGVQPSGELTIGNYLGALRNWVTLQDDYDCLFCIVDLHAITVRQDPIALRKSTLD 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
A+YLACGID +K+++F+QS V H +L W+L+ T G + +M QFK+KS + ENV
Sbjct: 63 VLALYLACGIDPNKSTIFIQSQVPEHSQLAWVLNCYTYFGEMGRMTQFKDKSARY-EENV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
V L TYPVLMA+DILLYQ++ VPVG+DQKQHLE+TR++A R N LYG + + G
Sbjct: 122 NVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDIANRFNTLYGKKDAE--GKLIE 179
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317
++F VPE I A ARVMSL + KMSKS + + I LL+ +A KIKR TDS
Sbjct: 180 SVFTVPECFIAKACARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKAVAKKIKRAMTDSDE 239
Query: 318 G--LEFDNLERPECNNLLSIYQLISGKT----------------------------KGV- 346
+++D + +NLL I I+GK+ G+
Sbjct: 240 PPVIKYDQKNKAGVSNLLDILAAITGKSMVELEAEFEGKMYGHLKTEVADQVMAMLTGLQ 299
Query: 347 -RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
RY+ D A L+K+ DGA KA A TL+ VY+ +GF+
Sbjct: 300 ERYQRFRQDEALLEKIYRDGAEKARMRAKKTLDEVYKLIGFV 341
>sp|Q6AGQ7|SYW_LEIXX Tryptophan--tRNA ligase OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=trpS PE=3 SV=1
Length = 337
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/340 (43%), Positives = 201/340 (59%), Gaps = 43/340 (12%)
Query: 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
R+ SG+QP+ S+HLGNY+GA+ W LQ +++ F +VDLHAIT+ D L + TR T
Sbjct: 6 RLYSGMQPSADSLHLGNYVGALLQWKELQAAHDAFFSVVDLHAITVAQDPHDLREKTRRT 65
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA Y+A GID S ++++VQSHV AH +L W+LS+ T G +M QFK+KS K G E
Sbjct: 66 AAQYIAAGIDPSVSTLYVQSHVPAHAQLAWVLSTITGYGEAARMTQFKDKSAKQGAEATS 125
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
V L TYPVLMA+DILL+ +D VPVG+DQ+QH+ELTR+LAER N R G
Sbjct: 126 VGLFTYPVLMAADILLFDADVVPVGDDQRQHVELTRDLAERFN------------SRFGE 173
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318
F VP+ +I GAR+ L SKMSKSA S + LLD D+ KI R TD+
Sbjct: 174 TFVVPQAMILKDGARIYDLQSPESKMSKSADSGAGIVWLLDEPDIARKKIMRAVTDTDGV 233
Query: 319 LEFDNLERPECNNLLSIYQLISGKT-----------------KGV-------------RY 348
+ +D +P +NLLSIY +SG+ KG+ R
Sbjct: 234 VSYDRAGKPGVSNLLSIYSALSGRAIQQIELDYEGKGYGDFKKGLVEVVVDALGPIRERT 293
Query: 349 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 388
E+++D A LD++LA AA+A + A+ TL Y+A+GFL+
Sbjct: 294 LELLADPAELDRILAGNAARAGEAAEITLAKAYEAIGFLQ 333
>sp|P00953|SYW_GEOSE Tryptophan--tRNA ligase OS=Geobacillus stearothermophilus GN=trpS
PE=1 SV=1
Length = 328
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 196/341 (57%), Gaps = 45/341 (13%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AAKYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N Y G
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY------------GE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 319 LEFDNLERPECNNLLSIYQLISGKT----------KGV--------------------RY 348
+ +D +P +NLL+IY +SG++ KG RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 349 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
M +S LD+VL +GA KA +A + + QAMG RR
Sbjct: 288 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>sp|P21656|SYW_BACSU Tryptophan--tRNA ligase OS=Bacillus subtilis (strain 168) GN=trpS
PE=1 SV=2
Length = 330
Score = 265 bits (677), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 151/343 (44%), Positives = 199/343 (58%), Gaps = 45/343 (13%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D +L K R
Sbjct: 1 MKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIR 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+KS G E
Sbjct: 61 NLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSK--GNEA 118
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
V LLTYP LMA+DILLY +D VPVGEDQKQHLELTR LAER N Y
Sbjct: 119 VVSGLLTYPPLMAADILLYGTDLVPVGEDQKQHLELTRNLAERFNKKYND---------- 168
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD + KIK TDS
Sbjct: 169 --IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSE 226
Query: 317 AGLEFDNLERPECNNLLSIYQLISGKT----------KGV-------------------- 346
++FD +P +NLL+IY ++ T KG
Sbjct: 227 GIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQD 286
Query: 347 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
RY E++ +S LD++L +GA +A A+ L + AMG R+
Sbjct: 287 RYYELI-ESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 328
>sp|P56396|SYW_HELPY Tryptophan--tRNA ligase OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=trpS PE=3 SV=2
Length = 326
Score = 265 bits (676), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 155/340 (45%), Positives = 192/340 (56%), Gaps = 46/340 (13%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KKR+ SG+QPTG IHLGNYLGAIK+W+ +Q+ YE LF +V+ HAITLP D L + E
Sbjct: 3 KKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAITLPIDPAFLKSQSYE 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
+ LACGID ++ +F+QS V H L WLL+ +G + +M QFK+KS K ++V
Sbjct: 63 LVKLLLACGIDPKQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRMTQFKDKSLK-NPKSV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
V L YP+LMASDILLYQSD VPVGEDQKQHLELTR +AE+ N +G
Sbjct: 122 NVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNIAEKFNRDFGN----------- 170
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317
FKVPEPLI GARVM L D KMSKS I LLD D+I KIK+ TDS
Sbjct: 171 -CFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDSMG 229
Query: 318 GLEFDNLERPECNNLLSIYQLISG----------KTKGV--------------------R 347
+ FD +R NLL+IY L+S K KG R
Sbjct: 230 VIAFDE-KREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVMIQALKPIQER 288
Query: 348 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
Y+EI D + +L GA KA +A AT + MG +
Sbjct: 289 YKEISDDE--VKAILNGGAEKARPLARATYQKAKELMGLI 326
>sp|Q929H5|SYW_LISIN Tryptophan--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=trpS PE=3 SV=1
Length = 331
Score = 265 bits (676), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 152/342 (44%), Positives = 200/342 (58%), Gaps = 43/342 (12%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK I SG+QP+G + LGNY+GA+K + Q+ YE + IVD HAIT+P D +L + TR
Sbjct: 1 MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTR 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
AA+YLA G+D KA++F+QS V AH + W+L IG L +M QFK+KS G
Sbjct: 61 SLAALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSDGKAG-- 118
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
V LLTYP LMA+DILLYQ++ VPVGEDQKQH+ELTR+LAER N +
Sbjct: 119 VSAGLLTYPPLMAADILLYQTNLVPVGEDQKQHIELTRDLAERFN------------KKH 166
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316
IF +PE IP GARVMSL D KMSKS + ++ I LLDP I KIK TDSS
Sbjct: 167 ADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSS 226
Query: 317 AGLEFDNLERPECNNLLSIYQLISGKT----------KG-------------VRYEEIMS 353
+E++ E+P +NLL+IY +I+G+T KG E+I
Sbjct: 227 GIIEYNKEEKPGVSNLLTIYSVITGETIANIEEKYVGKGYGDFKTDLAELVVAELEQIQE 286
Query: 354 ------DSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
+S LD +L GA KAA +A+ TL + +G R+
Sbjct: 287 RYYAYLESEELDNILDAGAEKAARVANKTLKKMENGVGLGRK 328
>sp|Q7NA61|SYW_PHOLL Tryptophan--tRNA ligase OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=trpS PE=3 SV=1
Length = 345
Score = 264 bits (675), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 149/357 (41%), Positives = 215/357 (60%), Gaps = 48/357 (13%)
Query: 64 LSEPTAPVASSSSVKKRIV-SGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAI 122
++EPT V+ + + +K IV SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVD HAI
Sbjct: 1 MNEPT--VSETLNSQKPIVFSGAQPSGELTIGNYMGALRQWVKMQDDYDCIYCIVDQHAI 58
Query: 123 TLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM 182
T+ D ++L K T +T A+YLACGID K+++FVQSHV H +L W+L+ T G L++M
Sbjct: 59 TVRQDPKELRKRTLDTLALYLACGIDPEKSTIFVQSHVPQHAQLSWILNCYTYFGELSRM 118
Query: 183 IQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
QFK+KS + EN+ L YPVLM +DIL+YQ++ VPVG DQKQHLEL+R++A+R N
Sbjct: 119 TQFKDKSAR-HAENINAGLFDYPVLMTADILVYQTNQVPVGIDQKQHLELSRDIAQRFNA 177
Query: 243 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 302
+YG IF VPEP IP GARVM+L D KMSKS + + I LL+
Sbjct: 178 IYGN------------IFAVPEPFIPTGGARVMALQDPEKKMSKSDDNRNNVIALLEDPK 225
Query: 303 VIANKIKRCKTDSSAG--LEFDNLERPECNNLLSIYQLISGKT----------------- 343
A KIKR TDS + +D ++P +NLL + ++GKT
Sbjct: 226 SAAKKIKRAVTDSEEPPRVRYDLEQKPGVSNLLDLLAGVTGKTIPELEAEFEGQMYGHLK 285
Query: 344 -------KGV------RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
G+ R+ +D L+K++A+GAAKA A TL+ VY+A+GF+
Sbjct: 286 SAVADAVSGMLTELQERFHYFRNDEILLNKIMAEGAAKAKARAQITLDKVYEAVGFI 342
>sp|Q89W91|SYW_BRAJA Tryptophan--tRNA ligase OS=Bradyrhizobium japonicum (strain USDA
110) GN=trpS PE=3 SV=1
Length = 350
Score = 263 bits (673), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/351 (41%), Positives = 204/351 (58%), Gaps = 46/351 (13%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQ----QLSKA 134
+R+ SGVQPTG++HLGNYLGAI N++ +Q ++ ++ +VD+HAIT D +L++
Sbjct: 5 ERVFSGVQPTGNLHLGNYLGAIVNFVKMQETHNCIYCVVDMHAITQGVDVWGGPVELARN 64
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
TRE A ++A GID K VF QS V H EL W+ + +GWL +M QFKEK+ K
Sbjct: 65 TREVTAAFIASGIDPKKHIVFNQSQVSGHAELAWIFNCVARMGWLGRMTQFKEKAGK-DR 123
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
EN V L YPVLMA+DILLY++ VPVGEDQKQHLEL+R++A++ N +G + G
Sbjct: 124 ENASVGLFDYPVLMAADILLYRATHVPVGEDQKQHLELSRDIAQKFNNDFGD-SIRAQGT 182
Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314
G F +PEP I RVMSL DG KMSKS SD SRINL D D IA KI++ KTD
Sbjct: 183 NDGLFFPLPEPFITGPATRVMSLRDGTKKMSKSDASDNSRINLTDDADTIAQKIRKAKTD 242
Query: 315 ------SSAGLEFDNLERPECNNLLSIYQLISGKTK--------GVRY------------ 348
GLE RPE +NL+ I+ ++ ++K G ++
Sbjct: 243 PEPLPTEEKGLE----ARPEADNLVGIFAALADRSKADVLRDFGGGQFSSFKNALAELCV 298
Query: 349 ----------EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
+ +++D ++D +L +G+ +A IAD T+ +GF+RR
Sbjct: 299 TKLAPIAGEMKRLVADPGHIDAILNEGSDRARAIADETMKLSKDIVGFIRR 349
>sp|Q8EK12|SYW_SHEON Tryptophan--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=trpS PE=3 SV=1
Length = 332
Score = 263 bits (673), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 144/342 (42%), Positives = 203/342 (59%), Gaps = 45/342 (13%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
K ++SG QP+G + +GNY+GA++ W+A+Q+S++ L+ +VDLHAIT+ D Q L +A +
Sbjct: 3 KPIVLSGAQPSGELTIGNYMGALRQWVAMQDSHDCLYCVVDLHAITVRQDPQALREACLD 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
T A+YLACG+D K++VF+QS V H +L W L+ T +G L++M QFK+KS K N+
Sbjct: 63 TLALYLACGVDPKKSTVFIQSQVPQHTQLGWALNCYTQMGELSRMTQFKDKSQKHAN-NI 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
V L YPVLMA+DILLYQ++ +PVG+DQKQHLELTR++A R N Y G
Sbjct: 122 NVGLFGYPVLMAADILLYQANEIPVGQDQKQHLELTRDIATRFNNAY------------G 169
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317
F +PEP IP GA+VMSL D L KMSKS + + I LL+ + K+K+ TDS
Sbjct: 170 ETFTIPEPFIPEHGAKVMSLQDPLKKMSKSDDNRNNVIGLLEDPKAVMKKLKKAMTDSDE 229
Query: 318 G--LEFDNLERPECNNLLSIYQLISGKT----------------KGV------------- 346
+ FD +P +NLLS+ I+G++ KG
Sbjct: 230 PPVVRFDIENKPGVSNLLSLMSGITGQSIASLEAEFEGKMYGHLKGAAGEAVVGMLEPLQ 289
Query: 347 -RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
RY + +D AYLD+V+ GA A A+ TL VY+ +G L
Sbjct: 290 ERYRALRADRAYLDQVMRAGAENAQARAEVTLKKVYEKIGLL 331
>sp|Q8NSJ4|SYW_CORGL Tryptophan--tRNA ligase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=trpS PE=3 SV=1
Length = 345
Score = 262 bits (669), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 199/345 (57%), Gaps = 43/345 (12%)
Query: 74 SSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
++ R++SG+QPT S HLGNYLGA+K WI LQ+SY+ +FI DLHAIT+ + ++L
Sbjct: 9 TAQTASRVLSGIQPTADSYHLGNYLGAVKQWIDLQDSYDAFYFIPDLHAITVDQEPEELR 68
Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
T AA LA GID ++++FVQSHV AH EL W+L+ T G ++M QFK+KS K
Sbjct: 69 NRTISGAAQLLALGIDPERSTLFVQSHVPAHAELSWVLTCLTGFGEASRMTQFKDKSSKR 128
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252
G + L TYP+LMA+DILLY+ VPVGEDQ+QHLELTR LAER N
Sbjct: 129 GADRTSAGLFTYPMLMAADILLYRPHLVPVGEDQRQHLELTRTLAERFN----------- 177
Query: 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312
R G F+VPE IP +++ L + +KMSKS + + INLLD V +IK
Sbjct: 178 -NRFGKAFEVPEGFIPQGASKIYDLQNPTAKMSKSGDNPKGIINLLDDPKVSTKRIKSAV 236
Query: 313 TDSSAGLEFDNLERPECNNLLSIYQLISGKT----------------KG----------- 345
TD+ + +D +P +NLL I ++G + KG
Sbjct: 237 TDNDGVIAYDPENKPGVSNLLVIQSALTGTSIDSLVDGYQGAGYGALKGDTADALEAFTT 296
Query: 346 ---VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
+Y+E M+D L++VLA GA +A ++A+ TL +VY +GFL
Sbjct: 297 PLKAKYDEYMNDRGELERVLAIGAERATEVANETLADVYDKIGFL 341
>sp|Q9ZJX4|SYW_HELPJ Tryptophan--tRNA ligase OS=Helicobacter pylori (strain J99) GN=trpS
PE=3 SV=1
Length = 326
Score = 261 bits (666), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 157/340 (46%), Positives = 190/340 (55%), Gaps = 46/340 (13%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KKR+ SG+QPTG IHLGNYLGAIK+W+ LQ+ YE LF IV+ HAITLP + L T E
Sbjct: 3 KKRVFSGIQPTGQIHLGNYLGAIKHWVELQDEYENLFCIVNSHAITLPIEPIFLKSQTYE 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
+ LACGI ++ +F+QS V H L WLL +G + +M QFK+KS K ++V
Sbjct: 63 LVKLLLACGISPKQSGLFIQSEVDEHPALAWLLDCQVSMGEMQRMTQFKDKSLK-NPKSV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
V L YP+LMASDILLYQSD VPVGEDQKQHLELTR +AE+ N +G
Sbjct: 122 NVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNVAEKFNRDFGN----------- 170
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317
FKVPEPLI GARVM L D KMSKS I LLD DVI KIK+ TDS
Sbjct: 171 -CFKVPEPLIAKVGARVMGLDDPKVKMSKSHKGANHAIFLLDEPDVIVKKIKKAATDSMG 229
Query: 318 GLEFDNLERPECNNLLSIYQLISGKT----------KGV--------------------R 347
+ FD R NLL+IY L+S ++ KG R
Sbjct: 230 VIAFDET-REGVFNLLNIYMLLSDESPEKIEERFRNKGYGDFKKELAEVVIQSLKPIQER 288
Query: 348 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
Y+EI D + VL GA KA +A AT + MG +
Sbjct: 289 YQEISDDE--VKAVLNCGAEKARPLARATYQKAKELMGLI 326
>sp|P67590|SYW_MYCTU Tryptophan--tRNA ligase OS=Mycobacterium tuberculosis GN=trpS PE=3
SV=1
Length = 336
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 196/346 (56%), Gaps = 43/346 (12%)
Query: 73 SSSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQL 131
S+ + +RI SGVQPT S+HLGN LGA+ W+ LQ+ ++ F +VDLHAIT+P D + L
Sbjct: 2 STPTGSRRIFSGVQPTSDSLHLGNALGAVAQWVGLQDDHDAFFCVVDLHAITIPQDPEAL 61
Query: 132 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
+ T TAA YLA GID +A++FVQS V AH +L W+L T G ++M QFK+KS +
Sbjct: 62 RRRTLITAAQYLALGIDPGRATIFVQSQVPAHTQLAWVLGCFTGFGQASRMTQFKDKSAR 121
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
G E V L TYPVL A+D+L Y ++ VPVGEDQ+QHLEL R++A+R N + G
Sbjct: 122 QGSEATTVGLFTYPVLQAADVLAYDTELVPVGEDQRQHLELARDVAQRFNSRFPG----- 176
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311
VP+ LIP A++ L D SKMSKSA +D INLLD + A KI+
Sbjct: 177 -------TLVVPDVLIPKMTAKIYDLQDPTSKMSKSAGTDAGLINLLDDPALSAKKIRSA 229
Query: 312 KTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGV------------------------- 346
TDS + +D +P +NLL+I ++G V
Sbjct: 230 VTDSERDIRYDPDVKPGVSNLLNIQSAVTGTDIDVLVDGYAGHGYGDLKKDTAEAVVEFV 289
Query: 347 -----RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
R +E+ +D A L+ VLA GA +A D+A T+ VY +GFL
Sbjct: 290 NPIQARVDELTADPAELEAVLAAGAQRAHDVASKTVQRVYDRLGFL 335
>sp|P67591|SYW_MYCBO Tryptophan--tRNA ligase OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=trpS PE=3 SV=1
Length = 336
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 196/346 (56%), Gaps = 43/346 (12%)
Query: 73 SSSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQL 131
S+ + +RI SGVQPT S+HLGN LGA+ W+ LQ+ ++ F +VDLHAIT+P D + L
Sbjct: 2 STPTGSRRIFSGVQPTSDSLHLGNALGAVAQWVGLQDDHDAFFCVVDLHAITIPQDPEAL 61
Query: 132 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
+ T TAA YLA GID +A++FVQS V AH +L W+L T G ++M QFK+KS +
Sbjct: 62 RRRTLITAAQYLALGIDPGRATIFVQSQVPAHTQLAWVLGCFTGFGQASRMTQFKDKSAR 121
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
G E V L TYPVL A+D+L Y ++ VPVGEDQ+QHLEL R++A+R N + G
Sbjct: 122 QGSEATTVGLFTYPVLQAADVLAYDTELVPVGEDQRQHLELARDVAQRFNSRFPG----- 176
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311
VP+ LIP A++ L D SKMSKSA +D INLLD + A KI+
Sbjct: 177 -------TLVVPDVLIPKMTAKIYDLQDPTSKMSKSAGTDAGLINLLDDPALSAKKIRSA 229
Query: 312 KTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGV------------------------- 346
TDS + +D +P +NLL+I ++G V
Sbjct: 230 VTDSERDIRYDPDVKPGVSNLLNIQSAVTGTDIDVLVDGYAGHGYGDLKKDTAEAVVEFV 289
Query: 347 -----RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
R +E+ +D A L+ VLA GA +A D+A T+ VY +GFL
Sbjct: 290 NPIQARVDELTADPAELEAVLAAGAQRAHDVASKTVQRVYDRLGFL 335
>sp|P43835|SYW_HAEIN Tryptophan--tRNA ligase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=trpS PE=3 SV=1
Length = 334
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/339 (42%), Positives = 197/339 (58%), Gaps = 45/339 (13%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SGVQP+G + +GNYLGA++NW+ +Q YE +F +VDLHAIT+ D L KAT + A
Sbjct: 6 VFSGVQPSGELTIGNYLGALRNWVKMQEDYECIFCVVDLHAITVRQDPVALRKATLDVLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID +K+++FVQSHV H +L W+L+ T G +++M QFK+KS + EN+ V
Sbjct: 66 LYLACGIDPNKSTIFVQSHVPEHTQLSWVLNCYTYFGEMSRMTQFKDKSARY-AENINVG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ+ VPVG+DQKQHLE+TR++A R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQAKSVPVGDDQKQHLEITRDIANRFNALYGN------------IF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG-- 318
+PE I AGAR+MSL D KMSKS + + + LL+ +A KIKR TDS
Sbjct: 173 TIPEIFIGKAGARIMSLQDPEKKMSKSDDNRNNVVTLLEDPKSVAKKIKRAVTDSDEPPV 232
Query: 319 LEFDNLERPECNNLLSIYQLIS------------GKTKG------------------VRY 348
+ +D + +NLL I ++ GK G R+
Sbjct: 233 VRYDVQNKAGVSNLLDILSAVTDKPIADLEKEFEGKMYGHLKTAVADEVSTLLASLQERF 292
Query: 349 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
+ +D LD +L GA KA A TL VY+A+GF+
Sbjct: 293 HQYRNDETLLDNILRQGAEKARAKAQETLAKVYEAVGFV 331
>sp|Q97LD6|SYW_CLOAB Tryptophan--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=trpS PE=3 SV=2
Length = 335
Score = 258 bits (660), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 202/340 (59%), Gaps = 43/340 (12%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KK I SG+QP+G + +GNY GAIKNW+ LQ+ Y+ + IVDLHAIT+ + + L + T +
Sbjct: 5 KKVIFSGIQPSGELTIGNYFGAIKNWVKLQDEYDCYYCIVDLHAITVKQEAKDLRRRTLQ 64
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
A Y+A GID K ++F+QSHV AHV+ W+L+ + +G L++M QFK+KS K +
Sbjct: 65 LIATYIASGIDPEKNTIFIQSHVPAHVQAQWILNCMSYVGELSRMTQFKDKSKKYEDTGI 124
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
G LL YPVLMA+DIL+YQ+D VPVG+DQ QH+ELTR+LA+R N Y
Sbjct: 125 GAGLLNYPVLMAADILIYQADLVPVGKDQTQHIELTRDLAQRFNSTY------------S 172
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317
FK+PE IP GA++MSL + L KMSKS+ + S I ++DP +VI KI R TD+
Sbjct: 173 ETFKIPEGYIPTGGAKIMSLQEPLKKMSKSSDNPNSFILIMDPPEVIKRKIARAVTDNVG 232
Query: 318 GLEFDNLERPECNNLLSIYQLISG--------KTKGVRY--------------------- 348
+++ + ++P NL++I +G K +G Y
Sbjct: 233 VVKYTD-DQPGVKNLMNIMSCCTGMSVKDIEDKYEGQGYSKFKEDVADALIQELEPIQNK 291
Query: 349 -EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
E++ D AYL + GA KA+ IA+ T++ + + +GF+
Sbjct: 292 VNELLKDKAYLQDICKKGAQKASYIANKTVSKMMRKVGFI 331
>sp|Q98C31|SYW_RHILO Tryptophan--tRNA ligase OS=Rhizobium loti (strain MAFF303099)
GN=trpS PE=3 SV=1
Length = 355
Score = 258 bits (659), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 201/354 (56%), Gaps = 41/354 (11%)
Query: 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKA 134
S+ K + SGVQPTG++HLGNYLGAIK ++ALQ + + ++ +VDLH++T + L+
Sbjct: 2 SAFKPLVFSGVQPTGNLHLGNYLGAIKKFVALQETSDCIYCVVDLHSLTAQLVHEDLADQ 61
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
TR A +LA GID K VF QS V H EL W+ + IGW+NKM QFK+K+ K
Sbjct: 62 TRSITAAFLASGIDPKKHIVFNQSRVMQHAELAWIFNCVARIGWMNKMTQFKDKAGK-DR 120
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK---- 250
EN + LL YP LMA+DILLY++ VPVGEDQKQHLELTR++A++ N + R +
Sbjct: 121 ENASLGLLAYPSLMAADILLYRATHVPVGEDQKQHLELTRDIAQKFNNDFSDRIARLGVG 180
Query: 251 ---KLGGRG-GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306
++G F + EP+I AR+MSL DG KMSKS PSD SRINL D D I+
Sbjct: 181 VEMQVGEETVNGFFPITEPVIGGPAARIMSLRDGSKKMSKSDPSDLSRINLTDDADTISK 240
Query: 307 KIKRCKTDSSA-GLEFDNLE-RPECNNLLSIYQLISGKTKGVRYEE-------------- 350
KI++ KTD A E LE RPE NL+ IY ++ +K +E
Sbjct: 241 KIRKAKTDPEALPSEVSGLESRPEAENLVGIYAGLAEMSKADVLKEFGGQQFSVFKPALA 300
Query: 351 ----------------IMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 388
I D AY+D VL DG +A +A+ T+ V +G L+
Sbjct: 301 DLAVEKLAPIAGEMRRIEGDRAYVDAVLRDGGERAGVLAETTMKTVRDIIGLLQ 354
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,220,793
Number of Sequences: 539616
Number of extensions: 5913514
Number of successful extensions: 15491
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 14926
Number of HSP's gapped (non-prelim): 267
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)