Query 016437
Match_columns 389
No_of_seqs 213 out of 1498
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 1.6E-97 3E-102 748.6 35.3 332 57-388 25-386 (389)
2 KOG2713 Mitochondrial tryptoph 100.0 4.7E-96 1E-100 699.8 27.0 301 78-389 13-347 (347)
3 PRK12284 tryptophanyl-tRNA syn 100.0 1.1E-90 2.4E-95 704.2 31.3 290 79-387 3-332 (431)
4 PRK12283 tryptophanyl-tRNA syn 100.0 6.3E-88 1.4E-92 679.0 33.1 303 78-387 2-397 (398)
5 PRK12556 tryptophanyl-tRNA syn 100.0 7E-88 1.5E-92 669.7 31.5 290 78-387 3-332 (332)
6 PRK00927 tryptophanyl-tRNA syn 100.0 3.2E-87 6.9E-92 665.6 31.5 298 78-388 1-332 (333)
7 COG0180 TrpS Tryptophanyl-tRNA 100.0 4E-86 8.6E-91 648.5 25.3 276 76-368 3-314 (314)
8 PRK12282 tryptophanyl-tRNA syn 100.0 2.1E-83 4.6E-88 638.0 31.7 293 78-387 2-330 (333)
9 TIGR00233 trpS tryptophanyl-tR 100.0 1.9E-82 4.1E-87 630.2 28.7 289 77-386 1-328 (328)
10 cd00806 TrpRS_core catalytic c 100.0 6.6E-72 1.4E-76 543.9 26.1 249 80-345 1-251 (280)
11 PRK12285 tryptophanyl-tRNA syn 100.0 1.4E-66 3.1E-71 523.2 29.6 276 76-381 64-355 (368)
12 PRK08560 tyrosyl-tRNA syntheta 100.0 2E-62 4.4E-67 487.0 25.7 229 76-341 28-261 (329)
13 PTZ00126 tyrosyl-tRNA syntheta 100.0 1.9E-61 4.2E-66 488.0 25.1 228 76-339 64-302 (383)
14 PTZ00348 tyrosyl-tRNA syntheta 100.0 7.5E-58 1.6E-62 487.3 28.1 239 77-339 31-282 (682)
15 cd00395 Tyr_Trp_RS_core cataly 100.0 3.5E-56 7.6E-61 432.2 25.8 223 80-345 1-244 (273)
16 PF00579 tRNA-synt_1b: tRNA sy 100.0 1.4E-56 3.1E-61 436.6 18.6 248 76-344 3-258 (292)
17 cd00805 TyrRS_core catalytic c 100.0 5.2E-56 1.1E-60 430.0 20.9 233 79-354 1-252 (269)
18 PLN02486 aminoacyl-tRNA ligase 100.0 8.9E-53 1.9E-57 424.7 28.8 257 76-364 71-352 (383)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 9.7E-48 2.1E-52 391.7 22.2 245 77-364 32-302 (408)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 2.3E-44 5.1E-49 367.0 25.4 245 76-364 31-300 (410)
21 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 8.3E-43 1.8E-47 352.4 19.7 237 78-343 30-296 (377)
22 KOG2144 Tyrosyl-tRNA synthetas 100.0 1.1E-35 2.3E-40 285.8 16.8 225 77-339 33-267 (360)
23 KOG2145 Cytoplasmic tryptophan 100.0 1E-33 2.2E-38 272.4 15.8 239 76-345 83-341 (397)
24 COG0162 TyrS Tyrosyl-tRNA synt 100.0 1.9E-32 4E-37 277.8 19.7 228 78-340 32-280 (401)
25 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.1E-31 2.4E-36 286.9 20.5 239 100-383 398-674 (682)
26 cd00808 GluRS_core catalytic c 99.7 5.6E-17 1.2E-21 155.3 14.6 172 86-311 9-192 (239)
27 KOG2623 Tyrosyl-tRNA synthetas 99.7 2.3E-15 5E-20 150.7 17.9 207 78-311 63-301 (467)
28 cd00802 class_I_aaRS_core cata 99.5 1.4E-13 3.1E-18 120.7 11.4 63 204-288 78-143 (143)
29 cd00418 GlxRS_core catalytic c 99.3 9.7E-11 2.1E-15 111.9 14.0 190 86-339 9-203 (230)
30 PRK05710 glutamyl-Q tRNA(Asp) 98.8 1.2E-08 2.6E-13 101.0 9.4 174 86-289 13-242 (299)
31 cd00674 LysRS_core_class_I cat 98.8 2.3E-07 4.9E-12 94.0 16.5 199 78-310 20-304 (353)
32 PRK14895 gltX glutamyl-tRNA sy 98.7 1.9E-07 4E-12 98.5 14.5 198 80-311 4-270 (513)
33 PRK01406 gltX glutamyl-tRNA sy 98.7 7.5E-07 1.6E-11 93.5 18.4 192 86-310 12-280 (476)
34 PRK00750 lysK lysyl-tRNA synth 98.7 4.8E-07 1.1E-11 95.7 15.6 200 79-308 25-307 (510)
35 TIGR00464 gltX_bact glutamyl-t 98.6 4E-06 8.6E-11 88.0 20.9 192 86-311 9-271 (470)
36 COG0008 GlnS Glutamyl- and glu 98.5 6.6E-07 1.4E-11 93.7 9.7 179 81-289 10-256 (472)
37 TIGR03838 queuosine_YadB gluta 98.4 2.9E-06 6.3E-11 83.2 13.4 194 86-311 8-255 (272)
38 PRK12558 glutamyl-tRNA synthet 98.3 1E-05 2.2E-10 84.3 15.4 191 86-311 10-270 (445)
39 cd00807 GlnRS_core catalytic c 98.3 2.6E-06 5.6E-11 82.0 9.7 157 86-289 9-170 (238)
40 PLN02627 glutamyl-tRNA synthet 98.3 2E-05 4.4E-10 83.6 16.2 200 79-311 46-323 (535)
41 cd09287 GluRS_non_core catalyt 98.3 5.5E-06 1.2E-10 79.9 10.1 162 82-288 5-171 (240)
42 cd02156 nt_trans nucleotidyl t 98.2 3.3E-06 7.1E-11 70.6 7.4 57 81-141 2-58 (105)
43 PF00749 tRNA-synt_1c: tRNA sy 98.2 3.1E-05 6.7E-10 77.3 14.0 194 86-311 9-275 (314)
44 PRK12410 glutamylglutaminyl-tR 98.2 9.9E-06 2.2E-10 84.1 10.8 191 86-311 7-265 (433)
45 PLN03233 putative glutamate-tR 98.2 5.7E-06 1.2E-10 87.6 8.6 177 80-288 11-251 (523)
46 PTZ00402 glutamyl-tRNA synthet 98.1 2.8E-05 6E-10 83.5 11.3 179 80-289 52-294 (601)
47 TIGR00467 lysS_arch lysyl-tRNA 98.0 3.8E-05 8.3E-10 81.5 10.4 81 78-161 19-129 (515)
48 PRK04156 gltX glutamyl-tRNA sy 98.0 6.1E-05 1.3E-09 80.7 12.0 181 78-288 101-343 (567)
49 PLN02907 glutamate-tRNA ligase 97.9 5.1E-05 1.1E-09 83.5 10.5 177 80-288 213-453 (722)
50 PRK00260 cysS cysteinyl-tRNA s 97.9 0.00043 9.4E-09 72.6 16.2 74 77-150 22-110 (463)
51 PLN02859 glutamine-tRNA ligase 97.9 4.9E-05 1.1E-09 83.7 9.3 176 81-288 265-504 (788)
52 cd00671 ArgRS_core catalytic c 97.8 8.7E-05 1.9E-09 69.7 8.3 152 82-241 6-184 (212)
53 PRK01611 argS arginyl-tRNA syn 97.7 5.2E-05 1.1E-09 80.2 6.5 184 81-299 116-335 (507)
54 COG1384 LysS Lysyl-tRNA synthe 97.6 5.5E-05 1.2E-09 79.4 4.8 81 77-160 19-131 (521)
55 PF01921 tRNA-synt_1f: tRNA sy 97.6 0.0002 4.3E-09 72.8 7.5 83 214-323 232-322 (360)
56 cd00668 Ile_Leu_Val_MetRS_core 97.5 0.00047 1E-08 68.2 9.7 64 86-150 10-100 (312)
57 cd00812 LeuRS_core catalytic c 97.5 0.00025 5.4E-09 70.6 7.1 81 86-168 10-104 (314)
58 PRK05347 glutaminyl-tRNA synth 97.4 0.00059 1.3E-08 72.9 8.8 96 80-182 29-135 (554)
59 TIGR00440 glnS glutaminyl-tRNA 97.3 0.00065 1.4E-08 72.3 8.0 90 86-182 8-106 (522)
60 PTZ00437 glutaminyl-tRNA synth 97.2 0.00078 1.7E-08 72.2 7.7 94 80-181 51-155 (574)
61 PRK14703 glutaminyl-tRNA synth 97.2 0.00094 2E-08 74.0 8.2 96 80-182 31-137 (771)
62 TIGR00463 gltX_arch glutamyl-t 97.1 0.0011 2.4E-08 71.1 7.7 93 80-180 93-196 (560)
63 cd00672 CysRS_core catalytic c 97.1 0.0056 1.2E-07 58.0 11.6 71 78-149 21-105 (213)
64 TIGR00435 cysS cysteinyl-tRNA 96.7 0.029 6.4E-07 59.0 13.5 73 78-150 22-107 (465)
65 PLN02946 cysteine-tRNA ligase 95.4 0.14 3.1E-06 55.2 11.6 73 77-149 79-165 (557)
66 PF01406 tRNA-synt_1e: tRNA sy 94.5 0.32 7E-06 48.7 10.4 68 82-150 13-94 (300)
67 KOG1149 Glutamyl-tRNA syntheta 94.3 0.07 1.5E-06 55.6 5.5 98 79-182 34-147 (524)
68 PRK00133 metG methionyl-tRNA s 93.4 0.28 6.1E-06 53.9 8.5 85 78-166 3-102 (673)
69 COG0143 MetG Methionyl-tRNA sy 92.9 0.34 7.3E-06 52.4 8.0 86 78-166 6-105 (558)
70 PRK12268 methionyl-tRNA synthe 92.7 0.33 7.2E-06 51.8 7.6 83 80-166 5-104 (556)
71 PLN02224 methionine-tRNA ligas 92.3 0.57 1.2E-05 51.2 8.9 84 78-165 70-168 (616)
72 PF09334 tRNA-synt_1g: tRNA sy 92.3 0.58 1.3E-05 48.3 8.6 76 86-165 9-98 (391)
73 PRK05743 ileS isoleucyl-tRNA s 90.7 0.38 8.3E-06 54.8 5.7 59 213-297 542-603 (912)
74 PLN02610 probable methionyl-tR 90.7 1.2 2.6E-05 50.3 9.4 88 78-168 18-120 (801)
75 KOG1147 Glutamyl-tRNA syntheta 89.8 0.78 1.7E-05 49.3 6.6 74 78-160 198-275 (712)
76 PRK00390 leuS leucyl-tRNA synt 88.7 1.8 3.9E-05 48.8 9.0 72 78-150 33-119 (805)
77 TIGR00234 tyrS tyrosyl-tRNA sy 88.7 2.3 4.9E-05 43.9 9.0 44 285-344 220-263 (377)
78 PRK12300 leuS leucyl-tRNA synt 86.2 0.84 1.8E-05 52.0 4.5 60 215-298 529-589 (897)
79 PRK11893 methionyl-tRNA synthe 86.2 2.4 5.2E-05 44.6 7.7 65 86-150 11-88 (511)
80 PRK12267 methionyl-tRNA synthe 86.1 1.9 4.1E-05 47.3 7.1 64 86-150 14-91 (648)
81 cd00814 MetRS_core catalytic c 85.7 1.6 3.5E-05 43.4 5.9 65 86-151 10-88 (319)
82 cd00818 IleRS_core catalytic c 85.2 2.3 4.9E-05 42.9 6.7 62 86-147 11-102 (338)
83 cd00818 IleRS_core catalytic c 84.3 0.82 1.8E-05 46.1 3.0 14 215-228 251-264 (338)
84 cd00817 ValRS_core catalytic c 84.1 0.76 1.7E-05 47.1 2.7 63 86-148 11-102 (382)
85 PRK14900 valS valyl-tRNA synth 83.7 1.5 3.3E-05 50.8 5.2 62 214-299 489-551 (1052)
86 PF00133 tRNA-synt_1: tRNA syn 83.4 1.6 3.5E-05 47.4 5.1 64 215-306 513-577 (601)
87 TIGR00456 argS arginyl-tRNA sy 83.4 0.73 1.6E-05 49.7 2.4 76 208-310 312-396 (566)
88 PRK11893 methionyl-tRNA synthe 83.3 0.61 1.3E-05 49.1 1.7 60 215-299 253-312 (511)
89 TIGR00398 metG methionyl-tRNA 83.2 2.5 5.4E-05 44.9 6.3 64 86-150 9-86 (530)
90 TIGR00395 leuS_arch leucyl-tRN 83.0 0.75 1.6E-05 52.6 2.4 73 215-311 572-650 (938)
91 TIGR00392 ileS isoleucyl-tRNA 82.9 1.9 4.2E-05 48.8 5.6 82 215-322 563-650 (861)
92 COG0495 LeuS Leucyl-tRNA synth 82.4 5.3 0.00011 45.2 8.6 63 216-298 526-591 (814)
93 PRK14536 cysS cysteinyl-tRNA s 81.9 9.8 0.00021 40.7 10.1 73 77-150 22-119 (490)
94 TIGR00396 leuS_bact leucyl-tRN 81.3 3.9 8.4E-05 46.5 7.2 72 79-150 31-116 (842)
95 PRK12418 cysteinyl-tRNA synthe 80.1 1.3 2.9E-05 45.8 2.8 69 81-150 13-96 (384)
96 PLN02563 aminoacyl-tRNA ligase 80.0 12 0.00025 43.4 10.4 73 79-151 112-201 (963)
97 PRK05729 valS valyl-tRNA synth 79.2 2.6 5.7E-05 47.9 5.0 61 214-299 471-533 (874)
98 PRK13804 ileS isoleucyl-tRNA s 79.0 3 6.6E-05 48.0 5.5 16 213-228 580-595 (961)
99 cd00817 ValRS_core catalytic c 78.7 2.8 6E-05 43.0 4.6 58 215-297 295-354 (382)
100 PLN02381 valyl-tRNA synthetase 77.7 3.4 7.4E-05 48.1 5.4 59 214-297 606-666 (1066)
101 PRK14535 cysS cysteinyl-tRNA s 77.7 7.5 0.00016 43.3 7.7 75 76-150 246-334 (699)
102 COG0495 LeuS Leucyl-tRNA synth 75.0 5.4 0.00012 45.2 5.9 73 77-151 34-124 (814)
103 PLN02563 aminoacyl-tRNA ligase 75.0 4.2 9E-05 46.9 5.1 28 214-241 614-642 (963)
104 TIGR03447 mycothiol_MshC cyste 74.7 2.1 4.5E-05 44.8 2.4 69 80-148 39-120 (411)
105 PLN02943 aminoacyl-tRNA ligase 74.6 4.3 9.4E-05 46.7 5.1 85 200-309 519-611 (958)
106 TIGR00422 valS valyl-tRNA synt 73.0 2.8 6.1E-05 47.5 3.1 61 214-299 476-538 (861)
107 PTZ00419 valyl-tRNA synthetase 72.5 3.9 8.5E-05 47.2 4.2 59 214-297 536-596 (995)
108 PLN02959 aminoacyl-tRNA ligase 72.3 6 0.00013 46.2 5.6 61 214-299 669-731 (1084)
109 PRK12268 methionyl-tRNA synthe 72.2 5 0.00011 43.0 4.7 57 218-298 289-346 (556)
110 cd00814 MetRS_core catalytic c 72.1 2.4 5.3E-05 42.2 2.1 58 216-298 235-292 (319)
111 PRK12267 methionyl-tRNA synthe 71.4 2.4 5.1E-05 46.5 2.0 70 216-310 254-328 (648)
112 PLN02882 aminoacyl-tRNA ligase 71.4 7 0.00015 46.0 5.9 75 198-296 548-624 (1159)
113 PLN02843 isoleucyl-tRNA synthe 71.4 3.1 6.6E-05 48.0 3.0 16 213-228 561-576 (974)
114 PTZ00399 cysteinyl-tRNA-synthe 70.8 2.7 5.9E-05 46.4 2.3 93 205-323 257-355 (651)
115 PRK13208 valS valyl-tRNA synth 70.0 4 8.7E-05 45.9 3.5 61 215-299 485-546 (800)
116 PTZ00419 valyl-tRNA synthetase 69.2 6.7 0.00014 45.3 5.1 45 78-122 61-111 (995)
117 PLN02843 isoleucyl-tRNA synthe 69.1 8.1 0.00018 44.7 5.7 74 78-151 33-136 (974)
118 COG0215 CysS Cysteinyl-tRNA sy 69.0 2.6 5.5E-05 44.7 1.6 82 205-310 210-297 (464)
119 PRK06039 ileS isoleucyl-tRNA s 68.8 7.5 0.00016 44.9 5.4 15 214-228 543-557 (975)
120 PLN02286 arginine-tRNA ligase 68.6 5.5 0.00012 43.3 4.0 64 219-302 331-394 (576)
121 KOG0435 Leucyl-tRNA synthetase 63.7 9.6 0.00021 42.4 4.6 79 72-151 52-147 (876)
122 COG0018 ArgS Arginyl-tRNA synt 63.7 5.9 0.00013 43.2 3.1 69 216-307 333-404 (577)
123 TIGR00398 metG methionyl-tRNA 63.3 5.6 0.00012 42.3 2.8 55 219-299 285-340 (530)
124 PRK13208 valS valyl-tRNA synth 63.3 15 0.00031 41.5 6.2 71 78-148 39-136 (800)
125 TIGR03447 mycothiol_MshC cyste 59.2 52 0.0011 34.6 9.0 69 205-297 230-299 (411)
126 TIGR00396 leuS_bact leucyl-tRN 58.8 14 0.0003 42.1 5.1 25 215-239 519-544 (842)
127 PRK14536 cysS cysteinyl-tRNA s 58.2 6.9 0.00015 41.9 2.4 69 205-298 222-291 (490)
128 PRK00390 leuS leucyl-tRNA synt 56.8 16 0.00034 41.4 5.1 25 215-239 522-547 (805)
129 COG0018 ArgS Arginyl-tRNA synt 56.6 11 0.00023 41.2 3.6 41 82-122 123-169 (577)
130 PRK12451 arginyl-tRNA syntheta 55.6 12 0.00026 40.6 3.7 58 219-300 328-385 (562)
131 PF00750 tRNA-synt_1d: tRNA sy 54.7 13 0.00029 37.8 3.7 75 215-310 236-312 (354)
132 TIGR00422 valS valyl-tRNA synt 54.6 7.8 0.00017 44.0 2.2 45 78-122 34-84 (861)
133 TIGR00456 argS arginyl-tRNA sy 54.3 12 0.00027 40.4 3.6 40 80-119 116-161 (566)
134 cd02168 NMNAT_Nudix Nicotinami 53.8 39 0.00084 31.3 6.3 67 85-160 8-77 (181)
135 KOG1148 Glutaminyl-tRNA synthe 52.6 22 0.00048 39.1 5.0 101 79-188 247-359 (764)
136 PLN02224 methionine-tRNA ligas 52.4 11 0.00025 41.3 3.0 71 215-310 320-395 (616)
137 PLN02660 pantoate--beta-alanin 51.4 57 0.0012 32.6 7.4 71 215-315 145-215 (284)
138 PTZ00427 isoleucine-tRNA ligas 50.1 29 0.00063 41.2 5.9 74 198-296 653-730 (1205)
139 COG0060 IleS Isoleucyl-tRNA sy 49.7 11 0.00024 43.4 2.3 42 272-322 593-641 (933)
140 PRK00133 metG methionyl-tRNA s 49.0 12 0.00025 41.4 2.4 31 260-298 311-341 (673)
141 PRK14900 valS valyl-tRNA synth 48.3 11 0.00024 43.9 2.2 45 78-122 49-99 (1052)
142 PRK14535 cysS cysteinyl-tRNA s 48.3 93 0.002 34.9 9.1 101 205-323 435-548 (699)
143 PRK05729 valS valyl-tRNA synth 48.0 11 0.00024 43.0 2.0 44 79-122 38-87 (874)
144 PRK14534 cysS cysteinyl-tRNA s 47.9 66 0.0014 34.5 7.7 72 78-150 21-117 (481)
145 PF00750 tRNA-synt_1d: tRNA sy 47.6 9.2 0.0002 38.9 1.3 41 82-122 26-72 (354)
146 COG0525 ValS Valyl-tRNA synthe 47.5 12 0.00026 42.7 2.2 36 87-122 44-83 (877)
147 PRK12451 arginyl-tRNA syntheta 46.7 17 0.00038 39.3 3.2 40 82-121 119-164 (562)
148 PF00133 tRNA-synt_1: tRNA syn 46.0 24 0.00051 38.5 4.2 46 78-123 24-75 (601)
149 PLN02286 arginine-tRNA ligase 44.9 16 0.00034 39.8 2.6 40 82-121 123-168 (576)
150 PLN02381 valyl-tRNA synthetase 44.6 15 0.00032 43.0 2.4 45 78-122 129-179 (1066)
151 PRK13804 ileS isoleucyl-tRNA s 42.2 16 0.00036 42.1 2.3 45 78-122 55-105 (961)
152 PRK05743 ileS isoleucyl-tRNA s 41.0 17 0.00036 41.8 2.2 73 79-151 51-152 (912)
153 PRK14534 cysS cysteinyl-tRNA s 40.5 16 0.00035 39.1 1.8 66 208-298 225-291 (481)
154 COG4320 Uncharacterized protei 40.1 19 0.00041 36.9 2.1 28 88-121 62-89 (410)
155 PLN02943 aminoacyl-tRNA ligase 40.0 20 0.00043 41.4 2.6 73 79-151 90-194 (958)
156 PF02662 FlpD: Methyl-viologen 39.8 1.3E+02 0.0028 26.1 7.1 71 83-159 32-103 (124)
157 TIGR00395 leuS_arch leucyl-tRN 39.3 15 0.00032 42.4 1.3 45 78-122 26-76 (938)
158 TIGR00392 ileS isoleucyl-tRNA 38.2 20 0.00044 40.7 2.2 45 78-122 37-87 (861)
159 PRK12418 cysteinyl-tRNA synthe 37.4 1.3E+02 0.0029 31.3 7.8 69 205-297 203-272 (384)
160 PF09334 tRNA-synt_1g: tRNA sy 37.0 11 0.00023 39.0 -0.1 30 260-297 309-338 (391)
161 cd02166 NMNAT_Archaea Nicotina 35.3 1.8E+02 0.0039 26.1 7.6 66 85-160 8-77 (163)
162 PLN02610 probable methionyl-tR 35.3 14 0.0003 41.9 0.4 30 260-297 330-359 (801)
163 COG0525 ValS Valyl-tRNA synthe 34.7 26 0.00057 40.1 2.4 20 273-297 517-536 (877)
164 PLN02959 aminoacyl-tRNA ligase 34.4 51 0.0011 38.8 4.7 36 87-122 56-96 (1084)
165 TIGR00018 panC pantoate--beta- 31.0 2.3E+02 0.0049 28.4 8.0 71 215-315 142-212 (282)
166 PRK06039 ileS isoleucyl-tRNA s 28.8 33 0.00072 39.7 2.0 45 78-122 42-92 (975)
167 PHA01929 putative scaffolding 26.6 2.3E+02 0.0049 28.4 6.9 63 323-385 115-199 (306)
168 PTZ00427 isoleucine-tRNA ligas 26.1 45 0.00099 39.6 2.5 44 79-122 104-153 (1205)
169 PLN02882 aminoacyl-tRNA ligase 25.3 49 0.0011 39.2 2.5 44 79-122 40-89 (1159)
170 PLN02413 choline-phosphate cyt 24.9 1.6E+02 0.0034 29.8 5.6 33 68-105 17-52 (294)
171 PF06254 DUF1019: Protein of u 23.8 2.7E+02 0.0058 23.2 5.9 39 346-384 42-86 (89)
172 PTZ00399 cysteinyl-tRNA-synthe 23.8 3.3E+02 0.0071 30.4 8.4 69 82-150 65-148 (651)
173 COG0143 MetG Methionyl-tRNA sy 23.5 92 0.002 34.1 4.0 44 260-311 315-363 (558)
174 KOG0436 Methionyl-tRNA synthet 23.5 2.8E+02 0.0061 29.8 7.3 65 86-150 49-126 (578)
175 KOG2007 Cysteinyl-tRNA synthet 22.9 41 0.0009 36.3 1.2 32 205-238 247-279 (586)
176 COG1703 ArgK Putative periplas 22.1 2.9E+02 0.0063 28.3 6.9 70 79-160 81-159 (323)
177 KOG0432 Valyl-tRNA synthetase 20.7 56 0.0012 37.5 1.8 49 261-315 574-627 (995)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.6e-97 Score=748.61 Aligned_cols=332 Identities=79% Similarity=1.211 Sum_probs=307.0
Q ss_pred ceeeeccCCCCCCCCCCCCCCCceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCCCHHHHHHHHH
Q 016437 57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136 (389)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~d~~~i~~~~~ 136 (389)
+|+++.++..+.++.+++.-.+++|||||||||.+|||||+|+|++|++||++++++||||||||+|+++++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~ 104 (389)
T PLN02886 25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR 104 (389)
T ss_pred hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence 34445555666667766666677999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHcCCCCCCcEEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcC
Q 016437 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 216 (389)
Q Consensus 137 ~~~a~~lA~GlDp~k~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~ 216 (389)
+++++|+||||||+|++||+||++++|.||+|+|+|.++++||+||+|||++.+..+.+++++|+|+||+|||||||+|+
T Consensus 105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~ 184 (389)
T PLN02886 105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ 184 (389)
T ss_pred HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999998765445789999999999999999999
Q ss_pred CcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCccc
Q 016437 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (389)
Q Consensus 217 adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~ 296 (389)
+|+||||+||+||+|||||||+|||+.||.+..+++|.+.+++|++|++++++.+++||||+||++|||||+|+++|+|+
T Consensus 185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~ 264 (389)
T PLN02886 185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRIN 264 (389)
T ss_pred CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEE
Confidence 99999999999999999999999999998655556666667789999999987668999999888899999998789999
Q ss_pred CCCCHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCHH------------------------------H
Q 016437 297 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG------------------------------V 346 (389)
Q Consensus 297 L~Dspe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~------------------------------~ 346 (389)
|+|+||+|++|||+|+||+.+.+++++|++|+++|++.||.+|++.+.+ +
T Consensus 265 L~Ds~e~I~kKI~~a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~K~~Lae~I~~~L~Pire 344 (389)
T PLN02886 265 LLDPPDVIANKIKRCKTDSFPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQV 344 (389)
T ss_pred ecCCHHHHHHHHhcCCCCCCCCccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887654 9
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 016437 347 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 388 (389)
Q Consensus 347 r~~~l~~~~~~l~~iL~~Ga~kAr~~A~~tl~~v~~~~G~~~ 388 (389)
||+++++|++||++||++|++|||++|++||++||++|||.+
T Consensus 345 r~~~l~~d~~~l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~~ 386 (389)
T PLN02886 345 RYEEIMSDPSYLDSVLKEGADAAAEIADRTLANVYQAMGFVQ 386 (389)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999963
No 2
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-96 Score=699.79 Aligned_cols=301 Identities=54% Similarity=0.862 Sum_probs=289.5
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHHccCc----EEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE----TLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS 153 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~----~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~ 153 (389)
+.+|||||||||.+|||||+|++++|++||+.++ ++|+|+|+||+|.|+||.++|+++.+++|.+||||+||+|+.
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~ 92 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS 92 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence 6899999999999999999999999999998654 699999999999999999999999999999999999999999
Q ss_pred EEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHH
Q 016437 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (389)
Q Consensus 154 if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLt 233 (389)
+|+||+||+|+||.|+|+|.++++||+||+|||+|+.+.+.+++++|+|+||+|||||||+|++++||||+||.||+||+
T Consensus 93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~ 172 (347)
T KOG2713|consen 93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA 172 (347)
T ss_pred eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999976665789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhccc
Q 016437 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313 (389)
Q Consensus 234 RdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~T 313 (389)
|+||++||+.||++ +|++|+.++...+++|++|+||.+|||||+|++.++|+|+|+|++|.+||+||.|
T Consensus 173 r~lA~~fN~~Y~~~-----------~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~T 241 (347)
T KOG2713|consen 173 RHLAQAFNKTYGTE-----------IFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQT 241 (347)
T ss_pred HHHHHHHhhhccCe-----------eecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhc
Confidence 99999999999965 5999999999856999999999999999999999999999999999999999999
Q ss_pred CCCCCcCcCCCCCCchhHHHHHHHHhcCCCHH------------------------------HHHHHHhcCHHHHHHHHH
Q 016437 314 DSSAGLEFDNLERPECNNLLSIYQLISGKTKG------------------------------VRYEEIMSDSAYLDKVLA 363 (389)
Q Consensus 314 D~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~------------------------------~r~~~l~~~~~~l~~iL~ 363 (389)
|....++|||.+||+++||++||++++|.+++ ++|+|++++++||++||+
T Consensus 242 D~~~~vtYd~~~RpgvsNLlni~aaVt~~s~eeV~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~ 321 (347)
T KOG2713|consen 242 DNTSGVTYDPANRPGVSNLLNIYAAVTGKSIEEVVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLE 321 (347)
T ss_pred ccccceeeCCccccchhHHHHHHHHHcCCCHHHHHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999998765 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccC
Q 016437 364 DGAAKAADIADATLNNVYQAMGFLRR 389 (389)
Q Consensus 364 ~Ga~kAr~~A~~tl~~v~~~~G~~~~ 389 (389)
+|++|||++|..+|.+||+.|||..+
T Consensus 322 ~GaekAre~A~~~l~~ik~~~Gf~~~ 347 (347)
T KOG2713|consen 322 EGAEKARELAAKNLEEIKQLMGFLQR 347 (347)
T ss_pred HhHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999753
No 3
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-90 Score=704.24 Aligned_cols=290 Identities=37% Similarity=0.607 Sum_probs=270.2
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHHc--cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~~v~lQ~--~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
.+|||||||||.+|||||+|++++|+++|+ +++|+||||||||+|++++++++++++++++++|+||||||+|++||+
T Consensus 3 ~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if~ 82 (431)
T PRK12284 3 TRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFYR 82 (431)
T ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEE
Confidence 589999999999999999999999999976 899999999999999889999999999999999999999999999999
Q ss_pred cCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC------CCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHH
Q 016437 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (389)
Q Consensus 157 QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~------~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhl 230 (389)
||++|+|.||+|+|+|++++++|+||+|||++..+.. .+++++|+|+||||||||||+|++|+||||+||+||+
T Consensus 83 QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qHl 162 (431)
T PRK12284 83 QSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQHI 162 (431)
T ss_pred CCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHHH
Confidence 9999999999999999999999999999998764331 1458999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhh
Q 016437 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (389)
Q Consensus 231 eLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~k 310 (389)
|||||||+|||+.||.+ +|++|++++.+.+++|||| || +|||||+ +|+|+|+|+|++|++|||+
T Consensus 163 ELaRdIA~rFN~~yg~~-----------~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~ 226 (431)
T PRK12284 163 EMARDIAQRFNHLYGGE-----------FFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIFS 226 (431)
T ss_pred HHHHHHHHHHhhhcCCc-----------ccCCCccccccccccccCC-CC-ccccCCC---CCEeeecCCHHHHHHHHhc
Confidence 99999999999999743 4999999998777999999 66 6999998 5899999999999999999
Q ss_pred cccCCCCCcCcCCCCCCchhHHHHHHHHhcCC-CHH-------------------------------HHHHHHhcCHHHH
Q 016437 311 CKTDSSAGLEFDNLERPECNNLLSIYQLISGK-TKG-------------------------------VRYEEIMSDSAYL 358 (389)
Q Consensus 311 A~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~-~~~-------------------------------~r~~~l~~~~~~l 358 (389)
|+||+.. +++|++|++|||++||++|++. +.+ +||++|++|++||
T Consensus 227 A~TDs~~---~~~~~~pe~snLl~i~~~~~~~~~~eel~~~~~~g~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~l 303 (431)
T PRK12284 227 IVTDSRA---PGEPKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFERIDRELAPMRERYEALIARPADI 303 (431)
T ss_pred CCCCCCC---CCCCCCCCcchHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 9999876 5678999999999999999763 222 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 016437 359 DKVLADGAAKAADIADATLNNVYQAMGFL 387 (389)
Q Consensus 359 ~~iL~~Ga~kAr~~A~~tl~~v~~~~G~~ 387 (389)
++||++|++|||++|++||++||++|||.
T Consensus 304 ~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~ 332 (431)
T PRK12284 304 EDILLAGAAKARRIATPFLAELREAVGLR 332 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 99999999999999999999999999985
No 4
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.3e-88 Score=679.01 Aligned_cols=303 Identities=37% Similarity=0.641 Sum_probs=276.2
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~-d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
+.+|||||||||.+|||||+|++++|+++|++++++|+||||||+|++. +++++++++++++++|+||||||+|++||+
T Consensus 2 ~~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~ 81 (398)
T PRK12283 2 PDRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFI 81 (398)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 3589999999999999999999999999999999999999999999854 999999999999999999999999999999
Q ss_pred cCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHH
Q 016437 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (389)
Q Consensus 157 QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRd 235 (389)
||++|+|+||+|+|+|.+++++|+||+|||++....+ .+++++|+|+||+|||||||+|++|+||||+||+||+|||||
T Consensus 82 QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRd 161 (398)
T PRK12283 82 QSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTRE 161 (398)
T ss_pred CCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHH
Confidence 9999999999999999999999999999999976521 256899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCccc----------------------------------------------------------cccCCCCC
Q 016437 236 LAERVNYLYGGRKW----------------------------------------------------------KKLGGRGG 257 (389)
Q Consensus 236 iA~rfN~~yg~~~~----------------------------------------------------------~~~~~~~~ 257 (389)
||+|||+.||.+.+ ...++.++
T Consensus 162 IA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (398)
T PRK12283 162 IARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGK 241 (398)
T ss_pred HHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCC
Confidence 99999999985210 00123455
Q ss_pred ccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHH
Q 016437 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQ 337 (389)
Q Consensus 258 ~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~ 337 (389)
.+|++|++++... ++|||| || +|||||+ +|+|+|+|+|++|++|||+|+||+.+...++ |++|++|||++||+
T Consensus 242 ~~~~~P~~~~~~~-~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~a~TDs~~~~~~~-~g~Pe~~nl~~i~~ 314 (398)
T PRK12283 242 IILPEPQALLTEA-SKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPARVRRTD-PGDPEKCPVWQLHQ 314 (398)
T ss_pred cccCCCcccccCC-CcccCC-CC-CcCCCCC---CCeeeCcCCHHHHHHHHHhCCCCCcccccCC-CCCCCcCHHHHHHH
Confidence 6799999999664 999999 88 7999997 5899999999999999999999998766655 59999999999999
Q ss_pred HhcCCCH-H--------------------------------HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 016437 338 LISGKTK-G--------------------------------VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAM 384 (389)
Q Consensus 338 ~~~~~~~-~--------------------------------~r~~~l~~~~~~l~~iL~~Ga~kAr~~A~~tl~~v~~~~ 384 (389)
+|+++.. + |||.+|++|+++|++||++|++|||++|++||++||++|
T Consensus 315 ~~~~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~~~a~~t~~~v~~~~ 394 (398)
T PRK12283 315 VYSDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVREAM 394 (398)
T ss_pred HhCCChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9987742 2 999999999999999999999999999999999999999
Q ss_pred CCc
Q 016437 385 GFL 387 (389)
Q Consensus 385 G~~ 387 (389)
||.
T Consensus 395 g~~ 397 (398)
T PRK12283 395 GLS 397 (398)
T ss_pred CCC
Confidence 985
No 5
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7e-88 Score=669.74 Aligned_cols=290 Identities=39% Similarity=0.643 Sum_probs=267.9
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHHccCc--EEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE--TLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~--~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if 155 (389)
+++|||||||||.+|||||+|++++|+++|+.++ ++|+||||||+|..++++++++++++++++|+||||||+|++||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 4699999999999999999999999999998665 99999999999988899999999999999999999999999999
Q ss_pred EcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC------CCCcccccchhhHHHhhhhhhcCCcEEeecCcchHH
Q 016437 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (389)
Q Consensus 156 ~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~------~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qh 229 (389)
+||++|+|++|+|+|+|.++++||+||+|||++..... ++++++|+|+||+|||||||+|++|+||||+||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 99999999999999999999999999999999875421 235799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhh
Q 016437 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (389)
Q Consensus 230 leLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~ 309 (389)
+|||||||+|||++||. +|++|++++++.++++||| || +|||||+ +|+|+|+|+|++|++|||
T Consensus 163 leLtRdiA~rfn~~yg~------------~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~---~n~I~L~D~p~~I~kKI~ 225 (332)
T PRK12556 163 IEIARDIATYFNHTFGD------------TFTLPEYVIQEEGAILPGL-DG-RKMSKSY---GNVIPLFAEQEKLRKLIF 225 (332)
T ss_pred HHHHHHHHHHHHHhccc------------cCCCceeccccccccccCC-CC-CCCCCCC---CCcccccCCHHHHHHHHH
Confidence 99999999999999983 4899999987656899999 77 6999998 478999999999999999
Q ss_pred hcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCC-HH-------------------------------HHHHHHhcCHHH
Q 016437 310 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKT-KG-------------------------------VRYEEIMSDSAY 357 (389)
Q Consensus 310 kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~-~~-------------------------------~r~~~l~~~~~~ 357 (389)
+|+||+.+ .+.+++|++||+++||++|++.. .+ +||++|++|++|
T Consensus 226 ka~Td~~~---~~~~~~p~~~~l~~i~~~~~~~~~~eei~~~y~~~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~ 302 (332)
T PRK12556 226 KIKTDSSL---PNEPKDPETSALFTIYKEFATEEEVQSMREKYETGIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSL 302 (332)
T ss_pred HhccCCCc---ccCCCCcchhHHHHHHHHHCCchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999976 45689999999999999997632 11 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 016437 358 LDKVLADGAAKAADIADATLNNVYQAMGFL 387 (389)
Q Consensus 358 l~~iL~~Ga~kAr~~A~~tl~~v~~~~G~~ 387 (389)
|++||++|++|||++|++||++||++|||.
T Consensus 303 ~~~il~~G~~kA~~~A~~tl~~v~~~~g~~ 332 (332)
T PRK12556 303 LDEALEKGAERAREIAKPNLAEIKKAIGFE 332 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999983
No 6
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.2e-87 Score=665.55 Aligned_cols=298 Identities=59% Similarity=0.965 Sum_probs=280.1
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 157 (389)
++++|+||||||.+|||||+|++++|++||+.++++|+||||||+|++.+++++++++++++++|+||||||+|+.||+|
T Consensus 1 ~~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~q 80 (333)
T PRK00927 1 KKRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQ 80 (333)
T ss_pred CCEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEe
Confidence 36899999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHHHH
Q 016437 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (389)
Q Consensus 158 S~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRdiA 237 (389)
|+|++|.+|+|+++|++++++|+|+++||++.... .+++++|+|+||+|||||||+|++|+||||+||+||+|||||||
T Consensus 81 S~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~-~~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia 159 (333)
T PRK00927 81 SHVPEHAELAWILNCITPLGELERMTQFKDKSAKQ-KENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIA 159 (333)
T ss_pred CCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhcc-CCCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999986543 26789999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccCCCC
Q 016437 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (389)
Q Consensus 238 ~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~~~ 317 (389)
++||++||. +|++|++++...+++||||+++++|||||+++++|+|+|+|+|++|++|||+|+||+..
T Consensus 160 ~~~n~~~~~------------~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~ 227 (333)
T PRK00927 160 RRFNNLYGE------------VFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSER 227 (333)
T ss_pred HHhhhhccc------------cCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCc
Confidence 999999973 49999999987668999996555699999987679999999999999999999999987
Q ss_pred --CcCcCCCCCCchhHHHHHHHHhcCCCHH--------------------------------HHHHHHhcCHHHHHHHHH
Q 016437 318 --GLEFDNLERPECNNLLSIYQLISGKTKG--------------------------------VRYEEIMSDSAYLDKVLA 363 (389)
Q Consensus 318 --~~~~~~~~~p~~~nll~i~~~~~~~~~~--------------------------------~r~~~l~~~~~~l~~iL~ 363 (389)
.+.++++++|++||+++||++|++.+.+ +||+++++|++||++||+
T Consensus 228 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~ 307 (333)
T PRK00927 228 LREIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILA 307 (333)
T ss_pred ccccccCCCCCCccccHHHHHHHhCCCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4568999999999999999999887644 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcc
Q 016437 364 DGAAKAADIADATLNNVYQAMGFLR 388 (389)
Q Consensus 364 ~Ga~kAr~~A~~tl~~v~~~~G~~~ 388 (389)
+|++|||++|++||++||++|||.+
T Consensus 308 ~G~~~a~~~a~~~l~~v~~~~g~~~ 332 (333)
T PRK00927 308 EGAEKARAVASKTLKEVREAMGLLR 332 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999964
No 7
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-86 Score=648.50 Aligned_cols=276 Identities=53% Similarity=0.829 Sum_probs=259.9
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHHcc-CcEEEEEeecccccCCCCH--HHHHHHHHHHHHHHHHcCCCCCCc
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSKA 152 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~-~~~~i~IaDlhAlt~~~d~--~~i~~~~~~~~a~~lA~GlDp~k~ 152 (389)
..+++||||+||||.||||||+|++++|+.+|++ ++|||||||+||+|.++++ +.+++++++++++||||||||+|+
T Consensus 3 ~~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~ 82 (314)
T COG0180 3 MKKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKS 82 (314)
T ss_pred CCCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCcccc
Confidence 3578999999999999999999999999999998 5999999999999998877 999999999999999999999999
Q ss_pred EEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHH
Q 016437 153 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (389)
Q Consensus 153 ~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleL 232 (389)
+||+||++|+|.||+|+|+|.++++||+||++||+++.+.+ +++++|+|+||+|||||||+|++++||||+||+||+||
T Consensus 83 ~if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleL 161 (314)
T COG0180 83 TIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLEL 161 (314)
T ss_pred EEEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHH
Confidence 99999999999999999999999999999999999988764 68999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcc
Q 016437 233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312 (389)
Q Consensus 233 tRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~ 312 (389)
|||||+|||+.||. +|++|+++++.. +++|||+++ +|||||+|+ |+|+|+|||++|++|||+|+
T Consensus 162 tRDiA~rfn~~y~~------------~f~~P~~~~~~~-~~i~gL~g~-~KMSkS~~n--s~I~L~D~~~~i~kKI~~~~ 225 (314)
T COG0180 162 TRDIARRFNHLYGE------------VFPLPEALISKV-ARLPGLDGP-GKMSKSDPN--SAIFLLDDPKTIRKKIKKAA 225 (314)
T ss_pred HHHHHHHHHhhcCC------------ccCCccccccCC-CcccCCCCC-CcccccCCC--CeeeccCCHHHHHHHHHHhc
Confidence 99999999999983 599999999987 899999766 899999974 89999999999999999999
Q ss_pred cCCCCCcCcCCCCCCchhHHHHHHHHhc-CCCHH--------------------------------HHHHHHhcCHHHHH
Q 016437 313 TDSSAGLEFDNLERPECNNLLSIYQLIS-GKTKG--------------------------------VRYEEIMSDSAYLD 359 (389)
Q Consensus 313 TD~~~~~~~~~~~~p~~~nll~i~~~~~-~~~~~--------------------------------~r~~~l~~~~~~l~ 359 (389)
||+...++++++++||+||+|+||.+|+ +++++ +||+++++|++||+
T Consensus 226 td~~~~~~~~~~g~Pe~~~l~~~~~~~~~~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~ 305 (314)
T COG0180 226 TDGPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLD 305 (314)
T ss_pred cCCCCccccCCCCCCCcchHHHHHHHhcCCCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9996678888899999999999999999 76543 99999999999999
Q ss_pred HHHHHHHHH
Q 016437 360 KVLADGAAK 368 (389)
Q Consensus 360 ~iL~~Ga~k 368 (389)
+||.+|++|
T Consensus 306 ~il~~g~~k 314 (314)
T COG0180 306 DILRKGAEK 314 (314)
T ss_pred HHHhccCCC
Confidence 999999874
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=2.1e-83 Score=637.99 Aligned_cols=293 Identities=34% Similarity=0.546 Sum_probs=272.8
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~-~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
+.+||||+||||.+|||||+|++++|++||+.++++|+||||||+|+ ..+++++++++++++++|+||||||+|++||+
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 46899999999999999999999999999998889999999999997 68999999999999999999999999999999
Q ss_pred cCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHH
Q 016437 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (389)
Q Consensus 157 QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRd 235 (389)
||+|++|.+|.|+++|.++++||+|+++||++....+ .+++++|+|+||+||||||++|++|+||||+||+||+|||||
T Consensus 82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd 161 (333)
T PRK12282 82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE 161 (333)
T ss_pred CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999998765443 357899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccCC
Q 016437 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315 (389)
Q Consensus 236 iA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~ 315 (389)
||+|||++||.+ +|+.|++++.. +++|||| +|.+|||||+ +|+|+|+|+|++|++||++|+||+
T Consensus 162 iA~~~n~~~~~~-----------~~~~p~~~~~~-~~~i~~L-~g~~KMSKS~---~~~I~L~D~pe~I~kKI~~A~td~ 225 (333)
T PRK12282 162 IVRRFNSLYGTD-----------VLVEPEALLPE-AGRLPGL-DGKAKMSKSL---GNAIYLSDDADTIKKKVMSMYTDP 225 (333)
T ss_pred HHHHHhhhcCCc-----------cccCchhcccC-CCcccCC-CCCCcCCCCC---CCeeeeeCCHHHHHHHHHhCcCCC
Confidence 999999999854 48999998876 4899999 7778999998 479999999999999999999999
Q ss_pred CCCcCcCCCCCCchhHHHHHHHHhc--CCCHH--------------------------------HHHHHHhcCHHHHHHH
Q 016437 316 SAGLEFDNLERPECNNLLSIYQLIS--GKTKG--------------------------------VRYEEIMSDSAYLDKV 361 (389)
Q Consensus 316 ~~~~~~~~~~~p~~~nll~i~~~~~--~~~~~--------------------------------~r~~~l~~~~~~l~~i 361 (389)
.+ ++++++++|++||+++|+++|. +.+.+ +||+++++|++||++|
T Consensus 226 ~~-~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~v 304 (333)
T PRK12282 226 NH-IRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEI 304 (333)
T ss_pred CC-ccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 64 7889999999999999999994 44322 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc
Q 016437 362 LADGAAKAADIADATLNNVYQAMGFL 387 (389)
Q Consensus 362 L~~Ga~kAr~~A~~tl~~v~~~~G~~ 387 (389)
|+.|++|||++|++||++||++|||.
T Consensus 305 l~~G~~ka~~~A~~~~~~v~~~~g~~ 330 (333)
T PRK12282 305 LKAGSEKAREVAAQTLSEVKDAMGLN 330 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999995
No 9
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=1.9e-82 Score=630.19 Aligned_cols=289 Identities=48% Similarity=0.683 Sum_probs=269.8
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCC--CHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 016437 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKASV 154 (389)
Q Consensus 77 ~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~--d~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (389)
+++++||||||||.+|||||+|+++.|+.+|.+++++|+||||||+|++. +++.+++++++++++|+||||||+|++|
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 80 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI 80 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence 36799999999999999999999999999999999999999999999866 8999999999999999999999999999
Q ss_pred EEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHH
Q 016437 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (389)
Q Consensus 155 f~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtR 234 (389)
|+||++++|++|.|+|+|.+|++||+|+++||++.. .+++++|+|+||+|||||||+|++|+||||+||+||+||||
T Consensus 81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR 157 (328)
T TIGR00233 81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR 157 (328)
T ss_pred EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence 999999999999999999999999999999998852 25689999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccC
Q 016437 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314 (389)
Q Consensus 235 diA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD 314 (389)
|||+|||++||. +|++|++++++..++|||| +| +|||||++ +|+|+|+|+|++|++||++|+||
T Consensus 158 dia~r~n~~~~~------------~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~--~s~I~L~D~~e~I~~KI~~a~td 221 (328)
T TIGR00233 158 DLAERFNKKFKN------------FFPKPESLISKFFPRLMGL-SG-KKMSKSDP--NSAIFLTDTPKQIKKKIRKAATD 221 (328)
T ss_pred HHHHHhhhhcCc------------ccCCChhhhccccCCCCCC-CC-CcCCCCCC--CCeEeecCCHHHHHHHHHhcCCC
Confidence 999999999973 4999999998777899999 56 79999996 48999999999999999999999
Q ss_pred CCCCcCcCCCCCCchhHHHHHHHHhcCCCH------H-------------------------------HHHHHHhcCHHH
Q 016437 315 SSAGLEFDNLERPECNNLLSIYQLISGKTK------G-------------------------------VRYEEIMSDSAY 357 (389)
Q Consensus 315 ~~~~~~~~~~~~p~~~nll~i~~~~~~~~~------~-------------------------------~r~~~l~~~~~~ 357 (389)
+.+.+.|+++++|+++|++.+|+++++.+. + +||+++++| +
T Consensus 222 ~~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~--~ 299 (328)
T TIGR00233 222 GGRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEE--I 299 (328)
T ss_pred CCCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 999899999999999988888887764432 1 999999988 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 016437 358 LDKVLADGAAKAADIADATLNNVYQAMGF 386 (389)
Q Consensus 358 l~~iL~~Ga~kAr~~A~~tl~~v~~~~G~ 386 (389)
|+++|..|+++||++|++||++||++|||
T Consensus 300 ~~~~l~~g~~~a~~~a~~~l~~v~~~~g~ 328 (328)
T TIGR00233 300 LDKILEPGAKKARETANKTLADVYKAMGL 328 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999997
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=6.6e-72 Score=543.92 Aligned_cols=249 Identities=47% Similarity=0.766 Sum_probs=236.0
Q ss_pred eEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016437 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (389)
Q Consensus 80 ~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~-d~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 157 (389)
++||||+|||.+|||||+|++++|++||+ +++++|+|||+||+|++. +++++++++++++++|+||||||+|++||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 58999999999999999999999999999 899999999999999987 9999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHHHH
Q 016437 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (389)
Q Consensus 158 S~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRdiA 237 (389)
|++++|.++.|+|+|.+++++|+|+++||++.+. .+++++|+|+||+|||||||+|++|+||||+||+||+||+||||
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia 158 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA 158 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999998764 26789999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccCCCC
Q 016437 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (389)
Q Consensus 238 ~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~~~ 317 (389)
+|||++||. +|++|++++++ +++||||++|++|||||++ +|+|+|+|+|++|++|||+|+||+.+
T Consensus 159 ~r~n~~~~~------------~~~~P~~l~~~-~~~i~~l~g~~~KMSKS~~--~~~I~L~d~~~~i~~KI~~a~td~~~ 223 (280)
T cd00806 159 RRFNKLYGE------------IFPKPAALLSK-GAFLPGLQGPSKKMSKSDP--NNAIFLTDSPKEIKKKIMKAATDGGR 223 (280)
T ss_pred HHhcccccc------------ccCCCeeeccC-CCccccCCCCCCcccCCCC--CCeEEeeCCHHHHHHHHHhccCCCCC
Confidence 999999973 59999999987 5899999777689999986 59999999999999999999999998
Q ss_pred CcCcCCCCCCchhHHHHHHHHhcCCCHH
Q 016437 318 GLEFDNLERPECNNLLSIYQLISGKTKG 345 (389)
Q Consensus 318 ~~~~~~~~~p~~~nll~i~~~~~~~~~~ 345 (389)
.+.++.+++|+++|+++||++|++.+.+
T Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 251 (280)
T cd00806 224 TEHRRDGGGPGVSNLVEIYSAFFNDDDE 251 (280)
T ss_pred ceecCCCCCCCcChHHHHHHHHhCCCHH
Confidence 7889999999999999999999988764
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-66 Score=523.18 Aligned_cols=276 Identities=25% Similarity=0.288 Sum_probs=238.5
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKAS 153 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~~d~~~i~~~~~~~~a~~lA~GlDp~k~~ 153 (389)
.+++++|||++|||.+|||||++ +.+|+.||+ +++++|+||||||+|+ ..+++++++++++++++|+||||||+|+.
T Consensus 64 ~~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~ 142 (368)
T PRK12285 64 GKPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTE 142 (368)
T ss_pred CCCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 34789999999999999999986 679999999 6899999999999998 67999999999999999999999999999
Q ss_pred EEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhh------cCCcEEeecCcch
Q 016437 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQK 227 (389)
Q Consensus 154 if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl------~~adiVpvG~DQ~ 227 (389)
||+||++++|.++.|.++|.+++++|+|+.+|+ +++++|+++||+|||||||+ |++|+||||+||+
T Consensus 143 i~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~ 214 (368)
T PRK12285 143 IYFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQD 214 (368)
T ss_pred EEECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchH
Confidence 999999999999999999999999999999885 45799999999999999999 8899999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHH
Q 016437 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (389)
Q Consensus 228 qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kK 307 (389)
||+|||||||+|||+.|| |++|.++++ +++||| +| +|||||+| +|+|+|+|+|++|++|
T Consensus 215 ~h~~ltRdiA~r~n~~~g--------------f~~P~~l~~---~~lpgL-~G-~KMSkS~~--~s~I~L~D~p~~I~kK 273 (368)
T PRK12285 215 PHIRLTRDIAERLHGGYG--------------FIKPSSTYH---KFMPGL-TG-GKMSSSKP--ESAIYLTDDPETVKKK 273 (368)
T ss_pred HHHHHHHHHHHHHhhhcC--------------CCCchhHhh---hcccCC-CC-CcCCCCCC--CCeeeccCCHHHHHHH
Confidence 999999999999999998 889999987 689999 56 69999997 6999999999999999
Q ss_pred hhhcccCCCCCcCc--CCCCCCchhHHHHHHHHhcC---CCHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016437 308 IKRCKTDSSAGLEF--DNLERPECNNLLSIYQLISG---KTKGVRYEEIMS---DSAYLDKVLADGAAKAADIADATLNN 379 (389)
Q Consensus 308 I~kA~TD~~~~~~~--~~~~~p~~~nll~i~~~~~~---~~~~~r~~~l~~---~~~~l~~iL~~Ga~kAr~~A~~tl~~ 379 (389)
||+|+||+..+++. ..+++|+++++++|+++|.. ++.++-++++.+ .+..+.+.|.+--.+--+-.++..++
T Consensus 274 I~kA~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~ 353 (368)
T PRK12285 274 IMKALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREE 353 (368)
T ss_pred HHhCcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987654 45789999999999999873 444555556644 44555555554443333333333333
Q ss_pred HH
Q 016437 380 VY 381 (389)
Q Consensus 380 v~ 381 (389)
++
T Consensus 354 ~~ 355 (368)
T PRK12285 354 AR 355 (368)
T ss_pred HH
Confidence 33
No 12
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=2e-62 Score=487.02 Aligned_cols=229 Identities=26% Similarity=0.367 Sum_probs=204.9
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCC-CCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS 153 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~-~d~~~i~~~~~~~~a~~lA~GlDp~k~~ 153 (389)
.+++++|+||+|||.+|||||+ ++.+|++||+ +++++|+||||||+|++ .+++++++++++++++|+|||+||+|++
T Consensus 28 ~~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~ 106 (329)
T PRK08560 28 KEEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTE 106 (329)
T ss_pred CCCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheE
Confidence 3578999999999999999976 5789999999 99999999999999995 7999999999999999999999999999
Q ss_pred EEEcCCchhhhH---HHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHH
Q 016437 154 VFVQSHVRAHVE---LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (389)
Q Consensus 154 if~QS~v~eh~e---L~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhl 230 (389)
||+||+|++|.+ +.|.|+|.+++++|+|+.+++.+. . ++.++|+|+||+|||||||+|++|+||||.||+||+
T Consensus 107 i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~---~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~ 182 (329)
T PRK08560 107 FVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRR---M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIH 182 (329)
T ss_pred EEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhccc---C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHH
Confidence 999999998875 344499999999999999887532 1 345999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhh
Q 016437 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (389)
Q Consensus 231 eLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~k 310 (389)
|||||||+||| +..|.++.. ++||||+++++|||||+| +|+|+|+|+|++|++|||+
T Consensus 183 ~l~Rdia~~~n------------------~~~p~~l~~---~~l~~L~g~~~KMSKS~p--~~~I~L~D~~~~I~~KI~k 239 (329)
T PRK08560 183 MLAREVLPKLG------------------YKKPVCIHT---PLLTGLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIKK 239 (329)
T ss_pred HHHHHhhHhcC------------------CCCceEEEc---CccCCCCCCCCCCcCCCC--CCeecccCCHHHHHHHHHh
Confidence 99999999999 335777775 679999665569999996 6999999999999999999
Q ss_pred cccCCCCCcCcCCCCCCchhHHHHHHHHhcC
Q 016437 311 CKTDSSAGLEFDNLERPECNNLLSIYQLISG 341 (389)
Q Consensus 311 A~TD~~~~~~~~~~~~p~~~nll~i~~~~~~ 341 (389)
|+|| |+.++.||+++|+++|..
T Consensus 240 A~t~---------~~~~~~n~v~~~~~~~~~ 261 (329)
T PRK08560 240 AYCP---------PGEVEGNPVLEIAKYHIF 261 (329)
T ss_pred ccCC---------CCCcCCCcHHHHHHHHhh
Confidence 9665 466889999999999863
No 13
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-61 Score=488.04 Aligned_cols=228 Identities=24% Similarity=0.361 Sum_probs=202.8
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHH--HHHHHHc-cCcEEEEEeecccccCC---CCHHHHHHHHHHHHHHHHHcCCCC
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIK--NWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDN 149 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~--~~v~lQ~-~~~~~i~IaDlhAlt~~---~d~~~i~~~~~~~~a~~lA~GlDp 149 (389)
.++++||+||||||.+|||| |+++ +|++||+ |++++|+||||||+|++ ++++++++++++++++|+|||+||
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~--g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp 141 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQ--GILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDM 141 (383)
T ss_pred CCCCEEEEEECCCCcccccc--hHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 46789999999999999999 5554 8999999 89999999999999984 699999999999999999999999
Q ss_pred CCcEEEEcCC-chhhhHHHHHHhcc----CcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecC
Q 016437 150 SKASVFVQSH-VRAHVELMWLLSSA----TPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 224 (389)
Q Consensus 150 ~k~~if~QS~-v~eh~eL~w~L~~~----~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~ 224 (389)
+|++||+||+ +++|.+++|++.|. +++++|+|+.+++++.. .++.++|+|+||+||||||++|++|+||||.
T Consensus 142 ~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~ 218 (383)
T PTZ00126 142 DNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGM 218 (383)
T ss_pred cceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCc
Confidence 9999999998 78999999998775 59999999999976542 2457899999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHH
Q 016437 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 304 (389)
Q Consensus 225 DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I 304 (389)
||+||+|||||+|++||+.| .|..+.. ++||||+||++|||||++ +++|+|+|+|++|
T Consensus 219 DQ~~~~~LaRdia~~~~~~~-----------------~~~~~~~---~~lpgL~dg~~KMSKS~~--ns~I~L~Dspe~I 276 (383)
T PTZ00126 219 DQRKVNMLAREYCDKKKIKK-----------------KPIILSH---HMLPGLLEGQEKMSKSDP--NSAIFMEDSEEDV 276 (383)
T ss_pred cHHHHHHHHHHHHHHhCCCC-----------------Cceeecc---cccccCCCCCCCCCcCCC--CCeecCCCCHHHH
Confidence 99999999999999999542 2433332 889999888899999997 5899999999999
Q ss_pred HHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHh
Q 016437 305 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI 339 (389)
Q Consensus 305 ~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~ 339 (389)
++|||+|+| +|+.++.||+++|++++
T Consensus 277 ~kKI~kA~t---------~p~~~~~npv~~~~~~~ 302 (383)
T PTZ00126 277 NRKIKKAYC---------PPGVIEGNPILAYFKSI 302 (383)
T ss_pred HHHHHhCcC---------CCCCCCCCcchhhhhhc
Confidence 999999955 55677889999999974
No 14
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.5e-58 Score=487.30 Aligned_cols=239 Identities=24% Similarity=0.372 Sum_probs=210.7
Q ss_pred CCceEEEeecCCCcchhhh-HHHHHHHHHHHHccCcEEEEEeecccccCC---CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 016437 77 VKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (389)
Q Consensus 77 ~~~~i~sGiqPTG~lHLGn-ylgai~~~v~lQ~~~~~~i~IaDlhAlt~~---~d~~~i~~~~~~~~a~~lA~GlDp~k~ 152 (389)
++++||+||||||++|||| ++++++.|..+|++++++||||||||+|++ .++++++.++++++++|+|+||||+|+
T Consensus 31 ~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~ 110 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 110 (682)
T ss_pred CCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 4689999999999999999 577788888888899999999999999974 388999998999999999999999999
Q ss_pred EEEEcCC-chhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC--CCCcccccchhhHHHhhhhhhcCCcEEeecCcchHH
Q 016437 153 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (389)
Q Consensus 153 ~if~QS~-v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~--~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qh 229 (389)
+||+||+ +++|++++|++ .++++++.++.++|++.+..+ .+++++|+++||+|||||||+|++|+||||+||+||
T Consensus 111 ~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~qh 188 (682)
T PTZ00348 111 LFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRKV 188 (682)
T ss_pred EEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHHH
Confidence 9999997 89999999999 678999999999998644222 235899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhh
Q 016437 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (389)
Q Consensus 230 leLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~ 309 (389)
+|||||+|++||+.| .|..+. . ++||||++|.+|||||+| +|+|+|+|+|++|++|||
T Consensus 189 ~eLaRdia~~~g~~~-----------------kpvil~--~-~~LpGL~gg~~KMSKS~p--~naI~L~Dspe~I~kKI~ 246 (682)
T PTZ00348 189 NMLAREYCDLIGRKL-----------------KPVILS--H-HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARKIR 246 (682)
T ss_pred HHHHHHHHHHhCCCC-----------------Cceecc--c-ccCcCCCCCCCcCCCCCC--CCeecccCCHHHHHHHHH
Confidence 999999999998432 233232 3 789999777789999997 599999999999999999
Q ss_pred hcccCCCC--CcCcCCCCCC----chhHHHHHHHHh
Q 016437 310 RCKTDSSA--GLEFDNLERP----ECNNLLSIYQLI 339 (389)
Q Consensus 310 kA~TD~~~--~~~~~~~~~p----~~~nll~i~~~~ 339 (389)
+|+||+.+ .+++.+|++| +.||+++||+++
T Consensus 247 kA~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~ 282 (682)
T PTZ00348 247 QAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCV 282 (682)
T ss_pred hCCCCCCcCcccccCCCCCccccCCCCcHHHHHHHH
Confidence 99999864 4566778888 889999999988
No 15
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=3.5e-56 Score=432.25 Aligned_cols=223 Identities=27% Similarity=0.408 Sum_probs=202.3
Q ss_pred eEEEeecCCC-cchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCC----------CHHHHHHHHHHHHHHHHHcCC
Q 016437 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI 147 (389)
Q Consensus 80 ~i~sGiqPTG-~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~----------d~~~i~~~~~~~~a~~lA~Gl 147 (389)
.+|+||+||| .+|||||+| +.+|+.+|+ +++++|+|||+||+|+.. +++++++++.+++++|+|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3899999999 699999999 889999999 899999999999999843 899999999999999999999
Q ss_pred C--CCCcEEEEcCCch---hhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCC----c
Q 016437 148 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D 218 (389)
Q Consensus 148 D--p~k~~if~QS~v~---eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~a----d 218 (389)
| |+|++||.||+|+ +|.++.|.+++.+++++|.|+.+||++.. +++++|+|+||+||||||++|++ |
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~----~~~~~~~~~Yp~lQaaD~l~l~~~~~~~ 155 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSE----EGISATEFTYPPLQAADFLLLNTTEGCD 155 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhc----CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence 9 9999999999999 89999999999999999999999998762 46899999999999999999988 9
Q ss_pred EEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC
Q 016437 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (389)
Q Consensus 219 iVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~ 298 (389)
+||||.||+||++++||+|+|||. |+.|..++. ++|||| +| .|||||+++.-..|+++
T Consensus 156 ~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~---p~l~~l-~G-~KMSKS~~~~i~l~~~~ 213 (273)
T cd00395 156 IQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTI---PLVTKL-DG-PKFGKSESGPKWLDTEK 213 (273)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEee---ccccCC-CC-CcCCCCCCCCccccccC
Confidence 999999999999999999999981 567888887 689999 67 49999986422235579
Q ss_pred CCHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCHH
Q 016437 299 DPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG 345 (389)
Q Consensus 299 Dspe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~ 345 (389)
|+|++|++||++|+ +++++.|+++|++.+.+
T Consensus 214 dsp~~i~~ki~~a~----------------d~~v~~~~~~~t~~~~~ 244 (273)
T cd00395 214 TSPYEFYQFWINAV----------------DSDVINILKYFTFLSKE 244 (273)
T ss_pred CCHHHHHHHHHccc----------------HhHHHHHHHHHcCCCHH
Confidence 99999999999993 58999999999987653
No 16
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=1.4e-56 Score=436.65 Aligned_cols=248 Identities=35% Similarity=0.539 Sum_probs=219.9
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCC---CHHHHHHHHHHHHHH--HHHcCCCC
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGIDN 149 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~---d~~~i~~~~~~~~a~--~lA~GlDp 149 (389)
.+++++|+||+|||.+|||| ++.+.+|++||+ +++++|+|||+||+++.. +++.++.++.+++.. |+|+|+||
T Consensus 3 ~~~~~~y~G~~PTg~lHlG~-l~~~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~ 81 (292)
T PF00579_consen 3 NKPFRVYTGIDPTGDLHLGH-LVPIMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDP 81 (292)
T ss_dssp HSSEEEEEEEESSSS-BHHH-HHHHHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHT
T ss_pred CCCcEEEEeECCCCcccchH-HHHHHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCc
Confidence 35789999999999999995 556789999995 899999999999999954 599999999999999 99999999
Q ss_pred CCcEEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhhhhcCCcEEeecCcchH
Q 016437 150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (389)
Q Consensus 150 ~k~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~q 228 (389)
+|+.||+||+|+++.++.|++.+..+..+|+|+.++++...+.+ ++.+++|+|+||+||||||+++++|+||||.||++
T Consensus 82 ~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~ 161 (292)
T PF00579_consen 82 EKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQRG 161 (292)
T ss_dssp TTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGHH
T ss_pred cceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHHH
Confidence 99999999999999999999999999999999999998655544 25789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHh
Q 016437 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 308 (389)
Q Consensus 229 hleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI 308 (389)
|++++||+|+|||++. .|++|..+++ +++|+| ||.+|||||+++ ++|+|+|++++|++||
T Consensus 162 ~~~l~rd~a~k~~~~~--------------~~~~p~~l~~---~~l~~l-~G~~KMSKS~~n--s~I~L~d~~~~i~~Ki 221 (292)
T PF00579_consen 162 HIELARDLARKFNYKE--------------IFPKPAGLTS---PLLPGL-DGQKKMSKSDPN--SAIFLDDSPEEIRKKI 221 (292)
T ss_dssp HHHHHHHHHHHHTHHS--------------TSSS-EEEEE---TCBBST-TSSSBTTTTTTG--GS-BTTTTHHHHHHHH
T ss_pred HHHHHHHHHhhhcccc--------------cccCchheee---cccccc-CCccccCccCCc--cEEEEeccchhHHHHH
Confidence 9999999999999871 3889999998 579998 787799999973 7999999999999999
Q ss_pred hhcccCCCCCcCcCCCCCCchhH-HHHHHHHhcCCCH
Q 016437 309 KRCKTDSSAGLEFDNLERPECNN-LLSIYQLISGKTK 344 (389)
Q Consensus 309 ~kA~TD~~~~~~~~~~~~p~~~n-ll~i~~~~~~~~~ 344 (389)
++|+||+.+.+......++.+++ +++++..+.+...
T Consensus 222 ~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 258 (292)
T PF00579_consen 222 KKAFCDPDRENPRLLKGRPFISPFLIERLEAFHGNDD 258 (292)
T ss_dssp HHSHTSTTSHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCcccccccccCCCCCHHHHHHHHHhcCCcc
Confidence 99999998866666667788888 8888888876543
No 17
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=5.2e-56 Score=430.01 Aligned_cols=233 Identities=22% Similarity=0.262 Sum_probs=201.4
Q ss_pred ceEEEeecCCC-cchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-C---------CCHHHHHHHHHHHHHHHHHcC
Q 016437 79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG 146 (389)
Q Consensus 79 ~~i~sGiqPTG-~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~---------~d~~~i~~~~~~~~a~~lA~G 146 (389)
.++|+||+||| .+|||||+++ .+|+.||+ +++++|+|||+||+++ + .++++++++++++.++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999 7999999985 59999999 8999999999999997 5 689999999999999999999
Q ss_pred CC--CCCcEEEEcCCchhhhHHHHH----HhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEE
Q 016437 147 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (389)
Q Consensus 147 lD--p~k~~if~QS~v~eh~eL~w~----L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiV 220 (389)
+| |+|++||+||+|++| ++|+ +++.+++++|.|+.+||++... .+++++|+|+||+||||||+++++|+|
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~ 155 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ 155 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence 97 999999999999998 7888 9999999999999999987643 257899999999999999999999999
Q ss_pred eecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCc-ccCCC
Q 016437 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR-INLLD 299 (389)
Q Consensus 221 pvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~-I~L~D 299 (389)
|||.||++|++++||+|+|||.. .|..+.. ++||+| +| +|||||.++ +. |++.|
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~~~------------------~~~~l~~---~ll~~l-~G-~KMSKS~~~--~~~i~l~d 210 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLGYK------------------KVVGLTT---PLLTGL-DG-GKMSKSEGN--AIWDPVLD 210 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhCCC------------------CcEEEee---ccccCC-CC-CcccCCCCC--cccccCCC
Confidence 99999999999999999999832 2434443 679999 67 599999863 33 69999
Q ss_pred CHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCHHHHHHHHhcC
Q 016437 300 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMSD 354 (389)
Q Consensus 300 spe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~~r~~~l~~~ 354 (389)
+|++|++||++|+|| ++.+++.++.++..++.++-.+++.+.
T Consensus 211 sp~~i~~Ki~~a~~~-------------~v~~~l~~~~~~~~~~~eel~~~~~~~ 252 (269)
T cd00805 211 SPYDVYQKIRNAFDP-------------DVLEFLKLFTFLDYEEIEELEEEHAEG 252 (269)
T ss_pred CHHHHHHHHHcCCcH-------------HHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 999999999999666 567777777777665555555555443
No 18
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=8.9e-53 Score=424.69 Aligned_cols=257 Identities=19% Similarity=0.263 Sum_probs=209.3
Q ss_pred CCCceEEEeecCCCc-chhhhHHHHH-HHHHHHHc--cCcEEEEEeecccccC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 016437 76 SVKKRIVSGVQPTGS-IHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~-lHLGnylgai-~~~v~lQ~--~~~~~i~IaDlhAlt~-~~d~~~i~~~~~~~~a~~lA~GlDp~ 150 (389)
.+++++|+|++|||. |||||+++++ .+| ||+ ++.++|+|+|+|+++. ..+++++++++++++++|+|||+||+
T Consensus 71 ~~~~~vYtG~~PSg~~lHlGHlv~~~~~~~--lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~ 148 (383)
T PLN02486 71 GEKFYLYTGRGPSSEALHLGHLIPFMFTKY--LQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVE 148 (383)
T ss_pred CCCeEEEeCCCCCCccccHHHHHHHHHHHH--HHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 447899999999995 9999999987 345 787 5778999999999998 56999999999999999999999999
Q ss_pred CcEEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhhh------hcCC-----c
Q 016437 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS-----D 218 (389)
Q Consensus 151 k~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADIL------l~~a-----d 218 (389)
|++||.|+++ +.++.|.... ++.|+.+|+++.+.++ .++.++|+++||+||||||| +++. +
T Consensus 149 kt~I~s~~~~--~~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~ 221 (383)
T PLN02486 149 RTFIFSDFDY--VGGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRC 221 (383)
T ss_pred ceEEEeccHH--HhHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcc
Confidence 9999965555 6566554322 5778889988877665 35679999999999999998 5665 8
Q ss_pred EEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC
Q 016437 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (389)
Q Consensus 219 iVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~ 298 (389)
+||||+||+||++||||||+|||+ .+|..+++ .++|||+++.+|||||++ +|+|+|+
T Consensus 222 lVPvG~DQd~~~~ltRdia~r~~~------------------~kp~~~~~---~~lp~L~g~~~KMSkS~~--nsaI~L~ 278 (383)
T PLN02486 222 LIPCAIDQDPYFRMTRDVAPRLGY------------------YKPALIES---RFFPALQGESGKMSASDP--NSAIYVT 278 (383)
T ss_pred eeecccchHHHHHHHHHHHHHhCC------------------CCcceecc---ccccCCCCCCCcCcCcCC--CCeeecc
Confidence 999999999999999999999993 35766654 789999766679999996 5899999
Q ss_pred CCHHHHHHHhhh-cccCCCCCcCc--CCCCCCchhHHHHHHHHhcCC--CHHHHHHHHhc---CHHHHHHHHHH
Q 016437 299 DPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLISGK--TKGVRYEEIMS---DSAYLDKVLAD 364 (389)
Q Consensus 299 Dspe~I~kKI~k-A~TD~~~~~~~--~~~~~p~~~nll~i~~~~~~~--~~~~r~~~l~~---~~~~l~~iL~~ 364 (389)
|+|++|++||++ |+||+..+++. ..+++|+++++++|+.+|.++ ..++-++++.+ .+.++.+.|.+
T Consensus 279 D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~y~~G~l~~ge~K~~lae 352 (383)
T PLN02486 279 DTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLIE 352 (383)
T ss_pred CCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 999999999999 99999887654 567899999999999999754 23444444543 33344444433
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=9.7e-48 Score=391.72 Aligned_cols=245 Identities=21% Similarity=0.251 Sum_probs=199.6
Q ss_pred CCceEEEeecCCCc-chhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-CC---------CHHHHHHHHHHHHHHHHH
Q 016437 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (389)
Q Consensus 77 ~~~~i~sGiqPTG~-lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~~---------d~~~i~~~~~~~~a~~lA 144 (389)
+++++|+||+|||. ||||||++ +.+|+.||+ +++++|+|||+||+++ |. +.+.+++|+.++.. .++
T Consensus 32 ~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i~~-ql~ 109 (408)
T PRK05912 32 EPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETIKE-QLF 109 (408)
T ss_pred CCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHHHH-HHH
Confidence 57899999999995 99999996 689999999 7899999999999997 42 56788888877644 569
Q ss_pred cCCCCCC--cEEEEcCCchhhhHHHHHHh---ccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhc----
Q 016437 145 CGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (389)
Q Consensus 145 ~GlDp~k--~~if~QS~v~eh~eL~w~L~---~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~---- 215 (389)
+|+||++ ++||+||+|+++.++.|+|. +.+++++|.+..+||++... .+.+++|+|+||+||||||+++
T Consensus 110 ~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D~l~l~~~~ 187 (408)
T PRK05912 110 KFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYDFVALNKRY 187 (408)
T ss_pred HhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhhHHHHhccC
Confidence 9999999 99999999999999999877 78999999999899876532 2568999999999999999999
Q ss_pred CCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcc
Q 016437 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (389)
Q Consensus 216 ~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I 295 (389)
++|+||||.||++|++++||+|+|||.. + +| .+.. +.|+|+ || +|||||. +|+|
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~~---~-----------~~----~l~~---plL~~~-~G-~KMsKS~---~naI 241 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGGK---P-----------QF----GLTM---PLLTGL-DG-KKMGKSE---GNAV 241 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCCC---C-----------eE----EEec---CCcCCC-CC-CcccCCC---CCce
Confidence 9999999999999999999999999832 0 12 2322 678898 78 7999997 6999
Q ss_pred cCCC---CHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCHHHHHHHHhc--CHHHHHHHHHH
Q 016437 296 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMS--DSAYLDKVLAD 364 (389)
Q Consensus 296 ~L~D---spe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~~r~~~l~~--~~~~l~~iL~~ 364 (389)
+|+| +|+++++||+++ .++++.+++.+|..++.+++++-.+++.+ .+..+.+.|++
T Consensus 242 ~L~d~~tsp~~i~qki~~~-------------~D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~Kk~LA~ 302 (408)
T PRK05912 242 WLDEEKTSPYEMYQKWMNI-------------SDADVWRYLKLLTFLSLEEIEELEEELAEGPNPREAKKVLAE 302 (408)
T ss_pred eCCCCCCCHHHHHHHHhcC-------------ChHHHHHHHHHHhcCCHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 9999 999999999996 12356666666666655555433333322 45566666653
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-44 Score=366.97 Aligned_cols=245 Identities=17% Similarity=0.197 Sum_probs=195.9
Q ss_pred CCCceEEEeecCCCc-chhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-C---------CCHHHHHHHHHHHHHHHH
Q 016437 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~-lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~---------~d~~~i~~~~~~~~a~~l 143 (389)
.+++++|+||+|||. +||||+++ +.+|..||+ |++++|+|||+||+++ | .+.+++++|+.++.+++.
T Consensus 31 ~~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~ 109 (410)
T PRK13354 31 GKPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIF 109 (410)
T ss_pred CCCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHH
Confidence 457899999999995 99999876 678999998 7999999999999986 3 256789999999988877
Q ss_pred HcCCCCCCcEEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhhhhc----CCc
Q 016437 144 ACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY----QSD 218 (389)
Q Consensus 144 A~GlDp~k~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADILl~----~ad 218 (389)
+ |+||+|++||.||+|+++.++.|+|.++.....++||.++++...+.. .+++++++|+||+|||||++++ ++|
T Consensus 110 ~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~~~~ 188 (410)
T PRK13354 110 K-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKEDVD 188 (410)
T ss_pred H-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccCCCC
Confidence 7 999999999999999998888888765555555566666655443332 2468999999999999999999 999
Q ss_pred EEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC
Q 016437 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (389)
Q Consensus 219 iVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~ 298 (389)
++|||.||++|++++||+|+|+|..+ |..+.. +.|+|+ ||+ |||||. +|+|+|+
T Consensus 189 iq~gG~DQ~~ni~~grdl~~r~~~~~------------------~~~lt~---PlL~g~-dG~-KMsKS~---~naI~L~ 242 (410)
T PRK13354 189 LQIGGTDQWGNILMGRDLQRKLEGEE------------------QFGLTM---PLLEGA-DGT-KMGKSA---GGAIWLD 242 (410)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCCCC------------------ceEecc---CCccCC-CCC-ccCCCC---CCceecc
Confidence 99999999999999999999999542 333333 668898 886 999997 5899999
Q ss_pred CC---HHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCHH---HHHHHHhc--CHHHHHHHHHH
Q 016437 299 DP---KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG---VRYEEIMS--DSAYLDKVLAD 364 (389)
Q Consensus 299 Ds---pe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~---~r~~~l~~--~~~~l~~iL~~ 364 (389)
|+ |+++++||+++ ..++++.|+++|+..+.+ +-.+++.+ .+.++.+.|.+
T Consensus 243 d~~tsp~~i~qki~~~----------------~D~~v~~~l~~~t~l~~~ei~~l~~~~~~~~~~~~~Kk~LA~ 300 (410)
T PRK13354 243 PEKTSPYEFYQFWMNI----------------DDRDVVKYLKLFTDLSPDEIDELEAQLETEPNPRDAKKVLAE 300 (410)
T ss_pred CCCCCHHHHHHHHHcC----------------ChHHHHHHHHHHhCCCHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 99 99999999986 116678999998875443 22222222 24556666643
No 21
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=8.3e-43 Score=352.35 Aligned_cols=237 Identities=21% Similarity=0.243 Sum_probs=190.0
Q ss_pred CceEEEeecCCC-cchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-CC---------CHHHHHHHHHHHHHHHHHc
Q 016437 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC 145 (389)
Q Consensus 78 ~~~i~sGiqPTG-~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~~---------d~~~i~~~~~~~~a~~lA~ 145 (389)
++++|+||+||| .+|||||++ +.+|.+||+ |++++++|||+||+++ |. +.+++++|+ +.++.++|+
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~ 107 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR 107 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence 689999999999 799999998 578999998 7999999999999998 43 445566666 667889999
Q ss_pred CCCCCCcEEEEcCCchh---hhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEee
Q 016437 146 GIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (389)
Q Consensus 146 GlDp~k~~if~QS~v~e---h~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpv 222 (389)
|+||++++|++||+|.. +.++.|.+++.+++++|.|..+|+.+.. +++++++|+||+|||+||+++++|+||+
T Consensus 108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~----~~is~~ef~YpllQa~D~~~l~~di~~g 183 (377)
T TIGR00234 108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLE----RGISLSEFIYPLLQAYDFVYLNVDLQIG 183 (377)
T ss_pred hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHh----cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence 99999999999999863 6778888999999999999999986542 3589999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC------CC--CCc
Q 016437 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP------SD--QSR 294 (389)
Q Consensus 223 G~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~------~~--~s~ 294 (389)
|.||++|++.+|++|+++|..+ .|.+|.++++ ++ || .|||||.. .+ .++
T Consensus 184 G~DQ~~ni~~g~dLar~~~~~~--------------~~~~t~pLl~-------~~-dg-~KmgKS~~~~i~l~~~~~~~~ 240 (377)
T TIGR00234 184 GSDQWGNIRKGRDLIRRNLPSL--------------GFGLTVPLLT-------PA-DG-EKMGKSGGGAVSLDEGKYDFY 240 (377)
T ss_pred cchhHHHHHHHHHHHHHhcCCC--------------ceeeceeeec-------CC-CC-CCccCCCCCcccCCccHhhhh
Confidence 9999999999999999999653 2666776665 33 45 57777642 11 388
Q ss_pred ccCCCCHHHHHHHhhhcccCCCCC-c------CcCCCCCCchhHHHHHHHHhcCCC
Q 016437 295 INLLDPKDVIANKIKRCKTDSSAG-L------EFDNLERPECNNLLSIYQLISGKT 343 (389)
Q Consensus 295 I~L~Dspe~I~kKI~kA~TD~~~~-~------~~~~~~~p~~~nll~i~~~~~~~~ 343 (389)
|++.|+||++.+||++++|+.... | +--.+.....+.+.++.+++-|..
T Consensus 241 i~~~d~~D~~~~Ki~k~~t~~~~~ei~~l~~~~~~~~~~~q~~la~ei~~~vhg~~ 296 (377)
T TIGR00234 241 QFWINTPDEDVKKILKLFTFLGLEEIEALVELKGPSPREVKENLAKEITKYVHGEE 296 (377)
T ss_pred hhhcCCcHHHHHHHHHHcCCCcHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999999998876431 0 000112234456666766666543
No 22
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-35 Score=285.78 Aligned_cols=225 Identities=25% Similarity=0.251 Sum_probs=176.8
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCC--CHHHHHHHHHH-HHHHHHHc---CCCC
Q 016437 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY--DTQQLSKATRE-TAAIYLAC---GIDN 149 (389)
Q Consensus 77 ~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~--d~~~i~~~~~~-~~a~~lA~---GlDp 149 (389)
+.+.||+|+.|||+||+|.+++++ +..++-+ ||++.|++|||||++++- ..+.+..++.+ ....|.+. +++.
T Consensus 33 r~l~~YwGtaptGrpHiay~vpm~-kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l 111 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVPMM-KIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL 111 (360)
T ss_pred cCceeeecCCCCCCcceeeeeehh-HHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 468999999999999999988854 6666655 899999999999999843 44445555543 33444444 4456
Q ss_pred CCcEEEEcCCc---hhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcc
Q 016437 150 SKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (389)
Q Consensus 150 ~k~~if~QS~v---~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ 226 (389)
++..+...|++ ++++-..+.++..++-..+.+. +-.-++ + .+...++.++||+|||+|++++.+|.+.+|.||
T Consensus 112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~a-gaevvk-q--ve~plls~llYP~MQalDe~~L~vD~qfgGvDQ 187 (360)
T KOG2144|consen 112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKA-GAEVVK-Q--VENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ 187 (360)
T ss_pred HHHhhhcccccccCccchhhHHHHHhhccHhHHHHh-hhhHHH-h--hcchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence 66666667765 3455556667766665544443 222122 1 267889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHH
Q 016437 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (389)
Q Consensus 227 ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~k 306 (389)
+..+.+||++...+|+ ++|-.+.+ +++|||+.| .|||||+| +|.|+|.|+|++|.+
T Consensus 188 RKIf~~A~eylp~l~y------------------kKrihLmn---pMvPGL~q~-~KMSsSd~--~SkIdllD~~~~V~k 243 (360)
T KOG2144|consen 188 RKIFVLAEEYLPDLGY------------------KKRIHLMN---PMVPGLAQG-EKMSSSDP--LSKIDLLDEPADVNK 243 (360)
T ss_pred HHHHHHHHHhhhhhCc------------------ccceeecC---CCCcccccc-CccccCCc--ccccccccCHHHHHH
Confidence 9999999999999983 34656666 679999655 89999997 599999999999999
Q ss_pred HhhhcccCCCCCcCcCCCCCCchhHHHHHHHHh
Q 016437 307 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI 339 (389)
Q Consensus 307 KI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~ 339 (389)
||++| ||+|+..+.|.|+++.+++
T Consensus 244 KI~kA---------fCePg~ve~Ng~L~fvkyv 267 (360)
T KOG2144|consen 244 KIKKA---------FCEPGNVEGNGCLSFVKYV 267 (360)
T ss_pred HHHHh---------cCCCCCcCCCcHHHHHHHH
Confidence 99999 9999999999999998854
No 23
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-33 Score=272.38 Aligned_cols=239 Identities=21% Similarity=0.301 Sum_probs=203.0
Q ss_pred CCCceEEEeecCCC-cchhhhHHHHH-HHHHHHHccCc--EEEEEeecccccC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 016437 76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQNSYE--TLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (389)
Q Consensus 76 ~~~~~i~sGiqPTG-~lHLGnylgai-~~~v~lQ~~~~--~~i~IaDlhAlt~-~~d~~~i~~~~~~~~a~~lA~GlDp~ 150 (389)
.++++.|||..||. .|||||.+++| .+| ||+.++ .+|.+.|.+.++. ....++..+.+++++.+++|||+||+
T Consensus 83 ~kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~ 160 (397)
T KOG2145|consen 83 GKPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPK 160 (397)
T ss_pred CCceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCc
Confidence 45789999999996 59999999998 799 888655 6999999999998 45889999999999999999999999
Q ss_pred CcEEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhhhhc-----------CCc
Q 016437 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY-----------QSD 218 (389)
Q Consensus 151 k~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADILl~-----------~ad 218 (389)
|+.||.+.++-.-. ..+-++-++.++.++++....+| +++.++|.+.+|..|||..+.- -.+
T Consensus 161 kTfIFsn~~y~g~~------~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~C 234 (397)
T KOG2145|consen 161 KTFIFSNLDYMGGP------AFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPC 234 (397)
T ss_pred ceEEEechhhccCc------HHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCce
Confidence 99999877763110 11234556668888877666666 5678999999999999998763 168
Q ss_pred EEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC
Q 016437 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (389)
Q Consensus 219 iVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~ 298 (389)
++|+..||++++++|||+|.|++ +++|..+++ .++|.|++.+.|||.|+| +++|+|+
T Consensus 235 LiPcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~s---tffpaLqG~~~KMSASdp--ns~Iflt 291 (397)
T KOG2145|consen 235 LIPCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHS---TFFPALQGAQTKMSASDP--NSAIFLT 291 (397)
T ss_pred eceeeccCChHHHhhhhhhhhhC------------------CCCcceeeh---hhchhhhCcccccccCCC--CceEEec
Confidence 99999999999999999999987 677988887 679999888899999997 6999999
Q ss_pred CCHHHHHHHhhh-cccCCCCCcCc--CCCCCCchhHHHHHHHHhcCCCHH
Q 016437 299 DPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLISGKTKG 345 (389)
Q Consensus 299 Dspe~I~kKI~k-A~TD~~~~~~~--~~~~~p~~~nll~i~~~~~~~~~~ 345 (389)
|++++|++||.+ |+++++.+++. ...++|++..-++|+++|.+++.+
T Consensus 292 dt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~k 341 (397)
T KOG2145|consen 292 DTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDK 341 (397)
T ss_pred CcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHH
Confidence 999999999987 99999988876 457899999999999999866543
No 24
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-32 Score=277.77 Aligned_cols=228 Identities=21% Similarity=0.242 Sum_probs=180.6
Q ss_pred CceEEEeecCCC-cchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-C-CCHHHHHHHHH----HHH-HHHHHcCCC
Q 016437 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P-YDTQQLSKATR----ETA-AIYLACGID 148 (389)
Q Consensus 78 ~~~i~sGiqPTG-~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~-~d~~~i~~~~~----~~~-a~~lA~GlD 148 (389)
+.++|.||+||| .+||||+++ +.+..+||+ |++++++|||+||+++ | ++.++.+..+. +++ ....++|.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~-l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVP-LMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CceEEEeeCCCCCccchhhHHH-HHHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 789999999999 699999998 568889998 8999999999999998 4 45666666553 233 334456876
Q ss_pred CC-CcEEEEcCCchh---hhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecC
Q 016437 149 NS-KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 224 (389)
Q Consensus 149 p~-k~~if~QS~v~e---h~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~ 224 (389)
++ ++.+..+|+|.. +.++--.++.++++++|.+...++.+... +..+++.+|+||+||++|+++++.|++.+|.
T Consensus 111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~--~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~ 188 (401)
T COG0162 111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLER--EQGISFTEFNYPLLQAYDFVYLNKDLQLGGS 188 (401)
T ss_pred CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhcc--CCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence 77 999999999953 33333346689999999999999765433 2469999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCC-------CCCcccC
Q 016437 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS-------DQSRINL 297 (389)
Q Consensus 225 DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~-------~~s~I~L 297 (389)
|||.++.++||+++|++. +.|.+++. +.|.++ ||. |||||..+ +.|.|.+
T Consensus 189 DQ~~ni~~grdl~rr~g~------------------~~~~~lt~---PLL~~l-dG~-KmgKs~~~a~~~~s~~~Sp~~~ 245 (401)
T COG0162 189 DQWGNILAGRDLIRRLGQ------------------KKVVGLTT---PLLTGL-DGK-KMGKSEGGAVWLDSEKTSPYDF 245 (401)
T ss_pred HHHHHHHHHHHHHHHhCC------------------CCeEEEEe---ccccCC-CCC-cccccCCCceEccCCCCCcHhh
Confidence 999999999999999773 34566776 569998 886 99988642 2447777
Q ss_pred CCCHHHHHHHhhhcccCCCCCcCcCCCC-CCchhHHHHHHHHhc
Q 016437 298 LDPKDVIANKIKRCKTDSSAGLEFDNLE-RPECNNLLSIYQLIS 340 (389)
Q Consensus 298 ~Dspe~I~kKI~kA~TD~~~~~~~~~~~-~p~~~nll~i~~~~~ 340 (389)
.|.+..|..|++.+ ||+.. ..+.+++.+|.+.+.
T Consensus 246 yq~~~~i~D~~~~~---------~~~~~t~l~~~eI~~i~~~~~ 280 (401)
T COG0162 246 YQYWMNIEDADVKR---------FLKLLTFLSLEEIEEIEKYVL 280 (401)
T ss_pred hhcHhcCcHHHHHH---------HHHHhCcCChHHHHHHHHHhh
Confidence 77778888888887 77665 555578888888553
No 25
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.98 E-value=1.1e-31 Score=286.88 Aligned_cols=239 Identities=16% Similarity=0.177 Sum_probs=187.5
Q ss_pred HHHHHHHHccCcEEEEEeecccccCC---CCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchhh-hHHHHH----Hh
Q 016437 100 IKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH-VELMWL----LS 171 (389)
Q Consensus 100 i~~~v~lQ~~~~~~i~IaDlhAlt~~---~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~eh-~eL~w~----L~ 171 (389)
++.+++-..|++++|++|||||++++ +|.++|++..+++.+.|.|+|+|++ +.|.++|+.... ...||. ++
T Consensus 398 ~~~~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia 476 (682)
T PTZ00348 398 TKDFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIA 476 (682)
T ss_pred HHHHHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHH
Confidence 34564434488999999999999984 7999999999999999999999999 999999997433 447886 56
Q ss_pred ccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccc
Q 016437 172 SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251 (389)
Q Consensus 172 ~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~ 251 (389)
..+++.|+.|+.. .+..++|.++||+||++||+++++|++.+|+||+..++||||++.+.++
T Consensus 477 ~~~tl~r~~r~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~~--------- 538 (682)
T PTZ00348 477 RKNLLSHVEELYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRIE--------- 538 (682)
T ss_pred HhccHHHHHHHhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhcccccc---------
Confidence 7899999998752 2556899999999999999999999999999999999999999995331
Q ss_pred cCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccCCCCCcCcCCCCCCchhH
Q 016437 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNN 331 (389)
Q Consensus 252 ~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~~~~~~~~~~~~p~~~n 331 (389)
|.+.+. .++|+|..|..+|++|++ +|+|+|.|++++|++||++| ||||+ .+.|+
T Consensus 539 -----------~~~~~~---~~~p~l~~~~~~~~~~s~--~s~i~~~D~~~~i~~Ki~kA---------~Cpp~-~~~Np 592 (682)
T PTZ00348 539 -----------CIQALE---GRVPALHRPGAAPAVLGA--DDVLYLDDNDMDIRRKIKKA---------YSAPN-EEANP 592 (682)
T ss_pred -----------chhhcC---CCCccccccccccCCCCC--CCeeeecCCHHHHHHHHHhC---------CCCCC-CCCCc
Confidence 323333 678999888889999865 79999999999999999999 99995 48899
Q ss_pred HHHHHHHhcCCC--------HH-------HHHHHHhcC-------H--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016437 332 LLSIYQLISGKT--------KG-------VRYEEIMSD-------S--------AYLDKVLADGAAKAADIADATLNNVY 381 (389)
Q Consensus 332 ll~i~~~~~~~~--------~~-------~r~~~l~~~-------~--------~~l~~iL~~Ga~kAr~~A~~tl~~v~ 381 (389)
+++|.+++-... .+ +-|++|.+| | ++|.++|+-..+.-..-|.+.|+.||
T Consensus 593 vl~~~~y~~~~~~~~~i~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~~~~~~~l~~~~ 672 (682)
T PTZ00348 593 VISVAQHLLAQQGALSIERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLSGELKKNMQTLR 672 (682)
T ss_pred HHHHHHHHhcCCCeEEEecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999862210 00 334444332 2 35566666655555455566666676
Q ss_pred HH
Q 016437 382 QA 383 (389)
Q Consensus 382 ~~ 383 (389)
++
T Consensus 673 ~~ 674 (682)
T PTZ00348 673 NA 674 (682)
T ss_pred HH
Confidence 54
No 26
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.73 E-value=5.6e-17 Score=155.32 Aligned_cols=172 Identities=19% Similarity=0.191 Sum_probs=126.3
Q ss_pred cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE-------EEEc
Q 016437 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ 157 (389)
Q Consensus 86 qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~-------if~Q 157 (389)
.|||.|||||+.+++.+|+..+. +..+++.|.|. ++ .....+....+.+++.++||+|++.. +|.|
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDt----d~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~Q 82 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIEDT----DQ--ERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQ 82 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcC----CC--CCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEee
Confidence 58899999999999999998876 33455569994 22 23455667788888999999999843 8999
Q ss_pred CCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHHHH
Q 016437 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (389)
Q Consensus 158 S~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRdiA 237 (389)
|+. ...|++...+...+. =|..+|++.++.|...++.++|+.|+|+..|....+.+.
T Consensus 83 S~r---------------------~~~y~~~~~~L~~~g--dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~ 139 (239)
T cd00808 83 SER---------------------LEIYRKYAEKLLEKG--DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLY 139 (239)
T ss_pred eCC---------------------HHHHHHHHHHHHHcC--CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHH
Confidence 974 222222222110011 288999999999999999999999999999999999999
Q ss_pred HHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC----CCHHHHHHHhhhc
Q 016437 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIKRC 311 (389)
Q Consensus 238 ~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~----Dspe~I~kKI~kA 311 (389)
+.|| ++.|...+. +.+++. +| .||||+..+ .+|.-. -+|+.|..-+...
T Consensus 140 ~aLg------------------~~~p~~~h~---pll~~~-~g-~KLSKR~~~--~~l~~lr~~G~~p~ai~~~l~~l 192 (239)
T cd00808 140 EALG------------------WEPPKFAHL---PLILNP-DG-KKLSKRKGD--TSISDYREEGYLPEALLNYLALL 192 (239)
T ss_pred HHcC------------------CCCCceEee---ccccCC-CC-CcccCCCCC--ccHHHHHHCCCCHHHHHHHHHHc
Confidence 9998 444654443 557776 66 699999842 333221 3688888887764
No 27
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.3e-15 Score=150.66 Aligned_cols=207 Identities=20% Similarity=0.247 Sum_probs=151.2
Q ss_pred CceEEEeecCCCc-chhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-CC---------CHHHHHHHHHHHHHHHH--
Q 016437 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL-- 143 (389)
Q Consensus 78 ~~~i~sGiqPTG~-lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~~---------d~~~i~~~~~~~~a~~l-- 143 (389)
+.+||.|++||.. +|+||.++.| ..+.+|. |++++-+|++.+|.++ |. +.+.++.|++.+...+.
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~lm-~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLALM-VLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHHH-HHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 5789999999986 9999999854 7777876 8999999999999987 31 22445555544333333
Q ss_pred --------HcCCCCCCcEEEEcCCchhhhHHHHHHh---ccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhh
Q 016437 144 --------ACGIDNSKASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDI 212 (389)
Q Consensus 144 --------A~GlDp~k~~if~QS~v~eh~eL~w~L~---~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADI 212 (389)
.+|....+-+|+.+|+|.+-..|-=+|+ -++-++.|.++-+.+.+.+. .+..++.+|+|-+|||+|.
T Consensus 142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~RLes--~~GlSftEFtYQ~lQAYDf 219 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKSRLES--PNGLSFTEFTYQLLQAYDF 219 (467)
T ss_pred HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHHhhcC--CCCCcHHHHHHHHHHHHhH
Confidence 3455556778999999965444333343 35677776666666544332 3678999999999999999
Q ss_pred hh----cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCC
Q 016437 213 LL----YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (389)
Q Consensus 213 Ll----~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~ 288 (389)
++ |+.+++.+|-||+.||...-|+.+|+-..-+ .+|.+..++++ + .+| .|..||.
T Consensus 220 y~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~------------~vfGlT~PLlT-------s-stG-~KlGKSa 278 (467)
T KOG2623|consen 220 YHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQA------------FVFGLTFPLLT-------S-STG-AKLGKSA 278 (467)
T ss_pred HHHHHhcCeeEEecccccccccchHHHHHHHhccccc------------ceeeeeeeeEe-------c-Ccc-hhhccCC
Confidence 88 4799999999999999999999999764211 12444444444 3 257 6999997
Q ss_pred CCCCCcccCCC---CHHHHHHHhhhc
Q 016437 289 PSDQSRINLLD---PKDVIANKIKRC 311 (389)
Q Consensus 289 ~~~~s~I~L~D---spe~I~kKI~kA 311 (389)
+|+|.|.- +|-.+++-.-++
T Consensus 279 ---GnAvWLdp~~tspy~lYQfF~~~ 301 (467)
T KOG2623|consen 279 ---GNAVWLDPSKTSPYHLYQFFASL 301 (467)
T ss_pred ---CceEEecCccCCcHHHHHHHHhC
Confidence 78999974 778888877776
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.50 E-value=1.4e-13 Score=120.74 Aligned_cols=63 Identities=44% Similarity=0.525 Sum_probs=53.8
Q ss_pred hhHHHhhhhhhcCC---cEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCC
Q 016437 204 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 280 (389)
Q Consensus 204 YPvLQAADILl~~a---diVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg 280 (389)
||+.|+||++.+.. |++++|.||.+|+++.++++++++ + ...|..+.. ++|.+. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~---~--------------~~~p~~~~~---~~l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG---G--------------PARPFGLTF---GRVMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhC---C--------------CCCceEEEe---CCeECC-CC
Confidence 99999999999999 999999999999999999999997 1 234666665 568776 55
Q ss_pred CCcCCCCC
Q 016437 281 LSKMSKSA 288 (389)
Q Consensus 281 ~~KMSKS~ 288 (389)
+|||||.
T Consensus 137 -~KmSks~ 143 (143)
T cd00802 137 -TKMSKSK 143 (143)
T ss_pred -CcCCCCC
Confidence 6999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.25 E-value=9.7e-11 Score=111.90 Aligned_cols=190 Identities=19% Similarity=0.188 Sum_probs=130.8
Q ss_pred cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchhhh
Q 016437 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV 164 (389)
Q Consensus 86 qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~eh~ 164 (389)
.|||.|||||...++.+|...+. +..+++-|-|... .....+....+..++.++||++++- +|+||+.-+.
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~------~R~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~~~- 80 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDP------ERSRPEYVESILEDLKWLGLDWDEG-PYRQSDRFDL- 80 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCCC-eeehhcCHHH-
Confidence 58899999999999999986644 5678888988754 2234456778888999999999964 8899986321
Q ss_pred HHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHHHHHHhhhhh
Q 016437 165 ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 244 (389)
Q Consensus 165 eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRdiA~rfN~~y 244 (389)
+. ++-++....| |..+|=.--+.|=.+.+.++|.-|+|+..+...-+.|.+.+|
T Consensus 81 --y~---------------~~~~~L~~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg--- 134 (230)
T cd00418 81 --YR---------------AYAEELIKKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG--- 134 (230)
T ss_pred --HH---------------HHHHHHHHcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC---
Confidence 10 0111111111 566666666667778899999999999999999999999987
Q ss_pred cCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC----CCHHHHHHHhhhcccCCCCCcC
Q 016437 245 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIKRCKTDSSAGLE 320 (389)
Q Consensus 245 g~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~----Dspe~I~kKI~kA~TD~~~~~~ 320 (389)
++.|...+. ++|.+. +| +||||+..+ .+|.=. -.|+.|..-+...=.
T Consensus 135 ---------------~~~P~~~H~---pll~~~-~g-~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~~lG~------- 185 (230)
T cd00418 135 ---------------WEPPRFYHF---PRLLLE-DG-TKLSKRKLN--TTLRALRRRGYLPEALRNYLALIGW------- 185 (230)
T ss_pred ---------------CCCCeEEEe---eeeeCC-CC-CCccCcCCC--cCHHHHHHCCCcHHHHHHHHHHcCC-------
Confidence 556776665 567775 66 699999853 333222 468888887765411
Q ss_pred cCCCCCCchhHHHHHHHHh
Q 016437 321 FDNLERPECNNLLSIYQLI 339 (389)
Q Consensus 321 ~~~~~~p~~~nll~i~~~~ 339 (389)
.++...++..+.++.+.|
T Consensus 186 -~~~~~~~~~~~~~li~~f 203 (230)
T cd00418 186 -SKPDGHELFTLEEMIAAF 203 (230)
T ss_pred -CCCCCccccCHHHHHHhc
Confidence 122223555566655555
No 30
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.83 E-value=1.2e-08 Score=101.01 Aligned_cols=174 Identities=19% Similarity=0.224 Sum_probs=112.6
Q ss_pred cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchhh-
Q 016437 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (389)
Q Consensus 86 qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~eh- 163 (389)
.|||.|||||+..|+.+|...+. +.++++-|-|... .....+....+.+++.++||+++.. +|+||+..+.
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~------~R~~~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~~~Y 85 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDP------PREVPGAADAILADLEWLGLHWDGP-VLYQSQRHDAY 85 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCC------CccchHHHHHHHHHHHHCCCCCCCC-ceEeeccHHHH
Confidence 57899999999999999987755 6678889999743 3344566778899999999999964 7889996421
Q ss_pred -------hHHHHHHhccCcHHHHhchhh--------HHHHHHhhCC-CC--------c---------------------c
Q 016437 164 -------VELMWLLSSATPIGWLNKMIQ--------FKEKSHKAGG-EN--------V---------------------G 198 (389)
Q Consensus 164 -------~eL~w~L~~~~~~~~L~R~~~--------~K~k~~~~~~-~~--------~---------------------~ 198 (389)
.+..+.+.|+++-.+|++..+ |--.-+.... +. + .
T Consensus 86 ~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~ 165 (299)
T PRK05710 86 RAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLALA 165 (299)
T ss_pred HHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCCC
Confidence 122234679999999865431 1100000000 00 0 0
Q ss_pred c---------ccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCC
Q 016437 199 V---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPP 269 (389)
Q Consensus 199 ~---------gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~ 269 (389)
+ |..+|=+-=+.|=...+.++|.=|+|....-..=..|.+.|| ++.|+..+.
T Consensus 166 ~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~P~y~H~- 226 (299)
T PRK05710 166 VGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPTPRYLHL- 226 (299)
T ss_pred CCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCCCeEEEe-
Confidence 1 112221111222233468899999998777666666777766 556877766
Q ss_pred CCcccccCCCCCCcCCCCCC
Q 016437 270 AGARVMSLTDGLSKMSKSAP 289 (389)
Q Consensus 270 ~~~~lpgL~dg~~KMSKS~~ 289 (389)
+.|.+. +| +||||++.
T Consensus 227 --pll~~~-~g-~kLSKr~~ 242 (299)
T PRK05710 227 --PLVLNA-DG-QKLSKQNG 242 (299)
T ss_pred --ecccCC-CC-CcccccCC
Confidence 457776 67 69999973
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.77 E-value=2.3e-07 Score=94.02 Aligned_cols=199 Identities=23% Similarity=0.258 Sum_probs=115.1
Q ss_pred CceEEEeecCCCcchhhhHHHHHHH--HHHHHc--cCcE-EEEEeeccc------------------cc--C-C----CC
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKN--WIALQN--SYET-LFFIVDLHA------------------IT--L-P----YD 127 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~--~v~lQ~--~~~~-~i~IaDlhA------------------lt--~-~----~d 127 (389)
+..|-||+-|+|.+||||+...+.- +.+.+. |+++ +++..|-|- .. . + ..
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 4678889999999999999876632 333333 6776 568999992 11 1 0 12
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhh---------------
Q 016437 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA--------------- 192 (389)
Q Consensus 128 ~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~--------------- 192 (389)
++-..++...+.+.|..+|++.+ +|.+++.+.+.++.=.+- ..|++....++.....
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~-----~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~ 171 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENIL-----IALEKRDEIMAILNEYRGRELQETWYPFMPY 171 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHH-----HHHHHCChHHHHHHHhcCCccCCCceeeeee
Confidence 34466667778888888999875 888888765433222110 0111111111110000
Q ss_pred ----CCCCc-------ccccchhh---------------------HHHhhhhhhcCCcEEeecCcchHH---HHHHHHHH
Q 016437 193 ----GGENV-------GVALLTYP---------------------VLMASDILLYQSDFVPVGEDQKQH---LELTRELA 237 (389)
Q Consensus 193 ----~~~~~-------~~gll~YP---------------------vLQAADILl~~adiVpvG~DQ~qh---leLtRdiA 237 (389)
|...+ .-+.+.|= +==++.=..++.|+.|+|.||..| +...+.|+
T Consensus 172 c~~cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~ 251 (353)
T cd00674 172 CEKCGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVDFEPFGKDHASAGGSYDTGKEIA 251 (353)
T ss_pred cCCcCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCCEEeeCccccccccHHHHHHHHH
Confidence 00000 01222231 111222233479999999999999 99999999
Q ss_pred H-HhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC-----CHHHHHHHhhh
Q 016437 238 E-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKR 310 (389)
Q Consensus 238 ~-rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D-----spe~I~kKI~k 310 (389)
+ .|+ .+.|..+... .+ .+ ++..|||||. +|.|.+.| +|+.++-=+.+
T Consensus 252 ~~ilg------------------~~~P~~~~ye---~V-~l-~gg~KMSKSk---GnvI~~~dll~~~~~dalR~~~l~ 304 (353)
T cd00674 252 REIFG------------------GEPPVPVMYE---FI-GL-KGGGKMSSSK---GNVITPSDWLEVAPPEVLRYLYAR 304 (353)
T ss_pred HHHhC------------------CCCCeEEEee---eE-Ee-CCCCccCCCC---CCcCCHHHHHHHhChHHHHHHHHh
Confidence 9 776 2335554442 23 34 3436999997 78887765 44555444433
No 32
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.72 E-value=1.9e-07 Score=98.53 Aligned_cols=198 Identities=16% Similarity=0.164 Sum_probs=125.5
Q ss_pred eEEEeecCC--CcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 80 ~i~sGiqPT--G~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
.|.+.|.|| |.|||||...++.+|.-.+. +.++++-|-|... .....+....+..++.++|||++.- .|+
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~------~R~~~~~~~~i~~~L~WLGl~wDe~-py~ 76 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDK------ERSTKEAVEAIFSGLKWLGLDWNGE-VIF 76 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCc------cccChHHHHHHHHHHHHcCCCCCCC-cee
Confidence 356777665 99999999999999986554 5677888988733 1223345667888899999999853 899
Q ss_pred cCCchh-hhHHHH-------HHhccCcHHHHhchhh----------HHHHHHhh-------CC----------C-Cc---
Q 016437 157 QSHVRA-HVELMW-------LLSSATPIGWLNKMIQ----------FKEKSHKA-------GG----------E-NV--- 197 (389)
Q Consensus 157 QS~v~e-h~eL~w-------~L~~~~~~~~L~R~~~----------~K~k~~~~-------~~----------~-~~--- 197 (389)
||+.-+ |.+..- .+-|+++-.+|+.+.. |....+.. +. + .+
T Consensus 77 QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~~ 156 (513)
T PRK14895 77 QSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIH 156 (513)
T ss_pred EeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEEE
Confidence 999532 222111 1569999888865431 10000000 00 0 00
Q ss_pred --ccccchh----------------hHHHhhhh---hhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCC
Q 016437 198 --GVALLTY----------------PVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256 (389)
Q Consensus 198 --~~gll~Y----------------PvLQAADI---Ll~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~ 256 (389)
-.|.+.+ |..+-|.+ ...+.++|..|+||..|.-.-..+.+.++
T Consensus 157 D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG--------------- 221 (513)
T PRK14895 157 DTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG--------------- 221 (513)
T ss_pred eecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC---------------
Confidence 0011111 22222211 22378999999999999988888888876
Q ss_pred CccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC------CHHHHHHHhhhc
Q 016437 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (389)
Q Consensus 257 ~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D------spe~I~kKI~kA 311 (389)
+..|...+. +.|.++ +| +||||... ...+.+ .|+.|.+-+...
T Consensus 222 ---~~~p~~~H~---plv~~~-~g-~KLSKR~g----~~~i~~~r~~G~~Peai~n~la~L 270 (513)
T PRK14895 222 ---YAVPSMTHI---PLIHGA-DG-AKLSKRHG----ALGIEAYKDMGYLPESLCNYLLRL 270 (513)
T ss_pred ---CCCCeEEEE---EeEEcC-CC-CccccccC----chhHHHHHHCCCCHHHHHHHHHHh
Confidence 344766665 557776 67 79999974 333332 788888887654
No 33
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.71 E-value=7.5e-07 Score=93.53 Aligned_cols=192 Identities=19% Similarity=0.205 Sum_probs=125.5
Q ss_pred cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCc------EEEEcC
Q 016437 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA------SVFVQS 158 (389)
Q Consensus 86 qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~------~if~QS 158 (389)
.|||.+||||...|+.+|+-... +.++++-|-|... .....+....+..++..+||+++.. -.|+||
T Consensus 12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~------~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~QS 85 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQ------ERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQS 85 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHCCCCCCCCCccCCCCceehh
Confidence 57899999999999999986544 5677778888743 2234455677888899999999964 159999
Q ss_pred Cchh-hhHHHH-------HHhccCcHHHHhchhh----------HHHH---------HHh--hCC---------C-----
Q 016437 159 HVRA-HVELMW-------LLSSATPIGWLNKMIQ----------FKEK---------SHK--AGG---------E----- 195 (389)
Q Consensus 159 ~v~e-h~eL~w-------~L~~~~~~~~L~R~~~----------~K~k---------~~~--~~~---------~----- 195 (389)
+.-+ |.+..- .+.|+++-.+|+.... |... .+. .|. +
T Consensus 86 ~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~ 165 (476)
T PRK01406 86 ERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVV 165 (476)
T ss_pred cCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCceE
Confidence 9532 222221 1569999988864421 1000 000 000 0
Q ss_pred ------------Ccccccc------hhhHHHhhhhh---hcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCC
Q 016437 196 ------------NVGVALL------TYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (389)
Q Consensus 196 ------------~~~~gll------~YPvLQAADIL---l~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~ 254 (389)
...++-+ .||..+.||++ ..+.|+|..|+||..|.-.-..+.+.|+
T Consensus 166 ~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG------------- 232 (476)
T PRK01406 166 FDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG------------- 232 (476)
T ss_pred EEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC-------------
Confidence 0001111 16777777774 3588999999999999998888888887
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC------CHHHHHHHhhh
Q 016437 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (389)
Q Consensus 255 ~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D------spe~I~kKI~k 310 (389)
+..|...+. +.+.++ +| +||||... .+.+.+ .|+.+.+-+.+
T Consensus 233 -----~~~p~~~H~---pli~~~-~g-~klSKR~g----~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 233 -----WEVPVFAHL---PLILGP-DG-KKLSKRHG----ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred -----CCCCeEEEe---eeeeCC-CC-CcccCcCC----ccCHHHHHHCCCCHHHHHHHHHH
Confidence 334665555 446676 66 69999973 555543 67777766654
No 34
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.66 E-value=4.8e-07 Score=95.67 Aligned_cols=200 Identities=20% Similarity=0.254 Sum_probs=111.1
Q ss_pred ceEEEeecCCCcchhhhHHHHHHH--HHHHH--ccCcE-EEEEeecccccC------------------C----CC----
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKN--WIALQ--NSYET-LFFIVDLHAITL------------------P----YD---- 127 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~--~v~lQ--~~~~~-~i~IaDlhAlt~------------------~----~d---- 127 (389)
..|-||+.|+|.+||||+..++.- +.+.. .|.++ +++..|-|.-.. + -+
T Consensus 25 ~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~ 104 (510)
T PRK00750 25 VVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGC 104 (510)
T ss_pred EEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCC
Confidence 688999999999999999776632 22222 26776 668899995211 0 01
Q ss_pred -HHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchhhhHHH---H-HHhccCcHHHH-hchhhHHHHH----------Hh
Q 016437 128 -TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELM---W-LLSSATPIGWL-NKMIQFKEKS----------HK 191 (389)
Q Consensus 128 -~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~eh~eL~---w-~L~~~~~~~~L-~R~~~~K~k~----------~~ 191 (389)
.+-..++.....+.|-.+|++.+ +|.+++.+...++. . .|...--+.++ ....+- +.. .+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~-~~~~~~~P~~pic~~ 180 (510)
T PRK00750 105 HESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIMEILLPYLGE-ERQATYSPFLPICPK 180 (510)
T ss_pred chHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCC-ccCCCeeeeeeeCCC
Confidence 22334455566677778899875 77777754322111 1 12111111110 000000 000 00
Q ss_pred hCC-C-------Ccccccchh----------hHHH-----------hhhhhhcCCcEEeecCcchH-HHHHHHHHHH-Hh
Q 016437 192 AGG-E-------NVGVALLTY----------PVLM-----------ASDILLYQSDFVPVGEDQKQ-HLELTRELAE-RV 240 (389)
Q Consensus 192 ~~~-~-------~~~~gll~Y----------PvLQ-----------AADILl~~adiVpvG~DQ~q-hleLtRdiA~-rf 240 (389)
.|. . +..-|.+.| ++.. ++-=..++.|+.|.|.||.. +..+++.|++ .|
T Consensus 181 cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~e~~GkDh~~~s~~~~~~i~~~il 260 (510)
T PRK00750 181 CGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVDWPMRWAALGVDFEPFGKDHASASYDTSKKIAREIL 260 (510)
T ss_pred CCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCCcHHHHHHcCCCEEeeCcccCcchHHHHHHHHHHHc
Confidence 000 0 001122333 1111 11112347999999999999 9999999999 76
Q ss_pred hhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC-----CHHHHHHHh
Q 016437 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKI 308 (389)
Q Consensus 241 N~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D-----spe~I~kKI 308 (389)
+ .+.|..+.. ..+..- +| +|||||. +|.|.+.| +|+.++-=+
T Consensus 261 g------------------~~~P~~~~y---~~v~~~-~G-~KMSKSk---GN~i~~~d~l~~~~pd~lR~~l 307 (510)
T PRK00750 261 G------------------GEPPEPFVY---ELFLDK-KG-EKISKSK---GNVITIEDWLEYAPPESLRLFM 307 (510)
T ss_pred C------------------CCCCeeeee---eeEEeC-CC-CcccccC---CCccCHHHHHHHCCHHHHHHHH
Confidence 6 334665554 335432 35 7999997 78998876 666665333
No 35
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.62 E-value=4e-06 Score=87.99 Aligned_cols=192 Identities=18% Similarity=0.203 Sum_probs=120.5
Q ss_pred cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchh-h
Q 016437 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (389)
Q Consensus 86 qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e-h 163 (389)
.|||.|||||...++.+|.-... +.++++-|-|... .....+....+..++..+||+++. ..|+||+.-+ |
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~------~R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~y 81 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDL------ERNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDIY 81 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC------ccCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHHH
Confidence 58899999999999999975543 6677888888743 223345667788889999999985 3899999532 2
Q ss_pred hHHHHH-------HhccCcHHHHhchhh----------H----HHHHH-----h--hCC---------C-C-c-----cc
Q 016437 164 VELMWL-------LSSATPIGWLNKMIQ----------F----KEKSH-----K--AGG---------E-N-V-----GV 199 (389)
Q Consensus 164 ~eL~w~-------L~~~~~~~~L~R~~~----------~----K~k~~-----~--~~~---------~-~-~-----~~ 199 (389)
.+..-. +.|+++-.+|+.+.. | .+... . .+. . . + -.
T Consensus 82 ~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~ 161 (470)
T TIGR00464 82 KKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVR 161 (470)
T ss_pred HHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEeccc
Confidence 222221 458899888864421 1 00000 0 000 0 0 0 00
Q ss_pred ccch----------------hhHHH---hhhhhhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccc
Q 016437 200 ALLT----------------YPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (389)
Q Consensus 200 gll~----------------YPvLQ---AADILl~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f 260 (389)
|.+. +|... +.|=...+.|+|..|.||..|...-..+.+.++ +
T Consensus 162 G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg------------------~ 223 (470)
T TIGR00464 162 GEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALG------------------W 223 (470)
T ss_pred ceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcC------------------C
Confidence 1111 22221 111122379999999999999999888988887 3
Q ss_pred cCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC------CHHHHHHHhhhc
Q 016437 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (389)
Q Consensus 261 ~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D------spe~I~kKI~kA 311 (389)
+.|...+. +.+.++ +| +||||.. +.+.|.| .|+.+.+-+.+.
T Consensus 224 ~~p~~~H~---p~l~~~-~g-~kLSKR~----g~~~l~~l~~~g~~p~a~~~~~~~l 271 (470)
T TIGR00464 224 KIPVFAHL---PMILDE-DG-KKLSKRD----GATSIMQFKEQGYLPEALINYLALL 271 (470)
T ss_pred CCCeEEEE---eeeecC-CC-ccccccC----CCccHHHHHHCCCCHHHHHHHHHHc
Confidence 34665555 346665 66 6999997 3455543 577777766543
No 36
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=6.6e-07 Score=93.72 Aligned_cols=179 Identities=20% Similarity=0.191 Sum_probs=114.9
Q ss_pred EEEee--cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016437 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (389)
Q Consensus 81 i~sGi--qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 157 (389)
|.+=| .|||.+||||...|+.||.-.+. +.++++-|-|... .....+....+..++..+||+++.. +|+|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~------~R~~~e~~~~I~~~L~WLGl~wde~-~~~Q 82 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDP------ERETPEAEDAILEDLEWLGLDWDEG-PYYQ 82 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCC------CCCCHHHHHHHHHHHHhcCCCCCCc-eeeh
Confidence 55555 46799999999999999976654 5678889999744 2234455667778889999999975 8999
Q ss_pred CCchh-hhH-HHHH------HhccCcHHHHhchh-----------hHH---------HHHHhhCC----------C--C-
Q 016437 158 SHVRA-HVE-LMWL------LSSATPIGWLNKMI-----------QFK---------EKSHKAGG----------E--N- 196 (389)
Q Consensus 158 S~v~e-h~e-L~w~------L~~~~~~~~L~R~~-----------~~K---------~k~~~~~~----------~--~- 196 (389)
|+.-+ +.+ ..++ +.|+++-.+|+.+. .|. ++....+. + .
T Consensus 83 S~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~ 162 (472)
T COG0008 83 SERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHP 162 (472)
T ss_pred hhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCC
Confidence 98632 222 2223 45899987776652 111 01111000 0 0
Q ss_pred ------cccccchhh------HHHhhhhhh------------cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCcccccc
Q 016437 197 ------VGVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (389)
Q Consensus 197 ------~~~gll~YP------vLQAADILl------------~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~ 252 (389)
.-.|.+..+ |++-+|++. .+.++|.-|+|...+-..=+-|-+.|+
T Consensus 163 ~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg----------- 231 (472)
T COG0008 163 GPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG----------- 231 (472)
T ss_pred CCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC-----------
Confidence 011333332 444444433 268999999998887776666666665
Q ss_pred CCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 016437 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (389)
Q Consensus 253 ~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~ 289 (389)
++.|...+. ++|.+ -+| +||||+..
T Consensus 232 -------~~~P~~~H~---~li~~-~~g-~kLSKr~~ 256 (472)
T COG0008 232 -------WPPPVYAHL---PLLLN-EDG-KKLSKRKG 256 (472)
T ss_pred -------CCCCcEEEe---eeeec-CCC-CeecCccC
Confidence 556777766 56777 466 79999973
No 37
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.45 E-value=2.9e-06 Score=83.20 Aligned_cols=194 Identities=15% Similarity=0.161 Sum_probs=118.2
Q ss_pred cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchh-h
Q 016437 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (389)
Q Consensus 86 qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e-h 163 (389)
.|||.|||||...|+.+|.-.+. +..+++-|-|... .....+....+..++..+||++++. .|+||+.-+ |
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~------~R~~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~~~Y 80 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDP------PREVPGAADDILRTLEAYGLHWDGE-VVYQSQRHALY 80 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCCC-eeeeeCCHHHH
Confidence 58999999999999999976544 5677888988754 1223455677888899999999974 789998633 2
Q ss_pred hHHHH-------HHhccCcHHHHhchh-----hHHHHHHh-----hCC----------CCcc-----cccch--------
Q 016437 164 VELMW-------LLSSATPIGWLNKMI-----QFKEKSHK-----AGG----------ENVG-----VALLT-------- 203 (389)
Q Consensus 164 ~eL~w-------~L~~~~~~~~L~R~~-----~~K~k~~~-----~~~----------~~~~-----~gll~-------- 203 (389)
.+..- .+.|+++-.++++.. .|...-+. .+. ..+. .|.+.
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~ 160 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVG 160 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCC
Confidence 22111 155999998886551 12110010 000 0000 01111
Q ss_pred ---------hhHHHhhhh---hhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCC
Q 016437 204 ---------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 271 (389)
Q Consensus 204 ---------YPvLQAADI---Ll~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~ 271 (389)
||..+=|-. .+.+.++|.=|+|...+--.=.-|.+.|+ ++.|...+.
T Consensus 161 D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~y~H~--- 219 (272)
T TIGR03838 161 DFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPRYLHL--- 219 (272)
T ss_pred CEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCeEEec---
Confidence 222222211 22468899999998877666666667665 556766665
Q ss_pred cccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhc
Q 016437 272 ARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311 (389)
Q Consensus 272 ~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA 311 (389)
+.|.+. +| +|+||++.. ..|.=.+.++.+..-+.+.
T Consensus 220 pll~~~-~g-~kLSKR~~~--~~i~~~~~~~~~~~~l~~l 255 (272)
T TIGR03838 220 PLVVNA-DG-EKLSKQNGA--PALDLSHPLPALLAALRFL 255 (272)
T ss_pred hhhhCC-CC-CeeeccCCc--cchhcCCcHHHHHHHHHHc
Confidence 557776 67 699999742 3343334555555555444
No 38
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.35 E-value=1e-05 Score=84.30 Aligned_cols=191 Identities=20% Similarity=0.176 Sum_probs=117.6
Q ss_pred cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchhh-
Q 016437 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (389)
Q Consensus 86 qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~eh- 163 (389)
.|||.|||||...|+.+|+-... +.+++.-|-|... ..........+..++..+|++++. .|.||+..+.
T Consensus 10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~------~Rs~~~~~~~I~e~L~wLGI~~De--~y~QSer~~~y 81 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDL------ERSKQEYADAIAEDLKWLGINWDR--TFRQSDRFDRY 81 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCc------ccchHHHHHHHHHHHHHcCCCCCc--cccHHHHHHHH
Confidence 57899999999999999986644 5677788988753 223345567788889999999994 7999996321
Q ss_pred hHH-------HHHHhccCcHHHHhchhh----------HHH---------HHHhh--C----------CCCc-----ccc
Q 016437 164 VEL-------MWLLSSATPIGWLNKMIQ----------FKE---------KSHKA--G----------GENV-----GVA 200 (389)
Q Consensus 164 ~eL-------~w~L~~~~~~~~L~R~~~----------~K~---------k~~~~--~----------~~~~-----~~g 200 (389)
.+. ...+.|+++-.+|+.+.. |.- ..+.. + ++.+ --|
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G 161 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIRG 161 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEeee
Confidence 111 112568999888864421 100 00000 0 0000 013
Q ss_pred cchhhHHHhhhhhh-------------------cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCcccc
Q 016437 201 LLTYPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 261 (389)
Q Consensus 201 ll~YPvLQAADILl-------------------~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~ 261 (389)
.+.++.-.--|.++ .+.++|.=|+|...+--.=.-|.+.|+ ++
T Consensus 162 ~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg------------------~~ 223 (445)
T PRK12558 162 EQSIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALG------------------AK 223 (445)
T ss_pred EeecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhC------------------CC
Confidence 33322211122222 258888999988776655555556655 45
Q ss_pred CCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC------CCHHHHHHHhhhc
Q 016437 262 VPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVIANKIKRC 311 (389)
Q Consensus 262 ~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~------Dspe~I~kKI~kA 311 (389)
.|+-.+. +.|.+- || +|+||.+. ...+. =.|+.|.+-+...
T Consensus 224 ~P~f~H~---pli~~~-~g-~KLSKR~g----~~sv~~~r~~G~~Peai~n~la~l 270 (445)
T PRK12558 224 PPVFAHL---SLLTGA-DG-KGLSKRLG----GLSIRSLREDGIEPMAIASLLARL 270 (445)
T ss_pred CCeEEEc---ccccCC-Cc-ccccccCC----CcCHHHHHHCCCCHHHHHHHHHHH
Confidence 6777666 457774 66 79999974 23332 2788888888765
No 39
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.33 E-value=2.6e-06 Score=82.03 Aligned_cols=157 Identities=15% Similarity=0.063 Sum_probs=98.3
Q ss_pred cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchh-h
Q 016437 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (389)
Q Consensus 86 qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e-h 163 (389)
.|||.|||||...++.+|..... +.+.++-|-|... .....+....+.+++..+||+++ .+++||+.-+ |
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~------~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~Y 80 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNP------EKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQL 80 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCC------cccchHHHHHHHHHHHHcCCCCC--CceecccCHHHH
Confidence 58899999999999999976643 5577888888743 23444567788889999999999 5889998532 2
Q ss_pred hHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHh---hhhhhcCCcEEeecCcchHHHHHHHHHHHHh
Q 016437 164 VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMA---SDILLYQSDFVPVGEDQKQHLELTRELAERV 240 (389)
Q Consensus 164 ~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQA---ADILl~~adiVpvG~DQ~qhleLtRdiA~rf 240 (389)
.+..-.|- ++-..|.. . ..+ + ...+||..+= .|=.+.+.++|.=|+|....-..=.-|.+.|
T Consensus 81 ~~~~~~L~--------~~g~aY~~-~-~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aL 145 (238)
T cd00807 81 YEYAEQLI--------KKGKAYVH-H-RTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDAL 145 (238)
T ss_pred HHHHHHHH--------HcCCeecC-C-CCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHc
Confidence 22111110 01111110 0 000 1 1223455543 3445568999999999887766666666766
Q ss_pred hhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 016437 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (389)
Q Consensus 241 N~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~ 289 (389)
+ ++.|..+.. ..+ +. +| .|+||+..
T Consensus 146 g------------------~~~P~~~~~---~hl-n~-~g-~kLSKR~~ 170 (238)
T cd00807 146 R------------------LYRPHQWEF---SRL-NL-TY-TVMSKRKL 170 (238)
T ss_pred C------------------CCCCceeEE---EEE-CC-CC-CCccCcCc
Confidence 5 445643322 223 44 66 69999973
No 40
>PLN02627 glutamyl-tRNA synthetase
Probab=98.29 E-value=2e-05 Score=83.64 Aligned_cols=200 Identities=17% Similarity=0.118 Sum_probs=121.6
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE----
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 153 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~---- 153 (389)
.++=--=.|||.|||||...|+.+|.-.+. +.+++.-|-|... .....+....+..++..+||+++...
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~------~R~~~e~~~~I~~~L~WLGl~wDegp~~gg 119 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDL------ARSTKESEEAVLRDLKWLGLDWDEGPDVGG 119 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCcCcccCC
Confidence 344444467899999999999999986654 6677888988743 22344566778888999999999642
Q ss_pred ---EEEcCCchh-hhHHH-------HHHhccCcHHHHhchhhHHH-------------------HHHh--hCC-------
Q 016437 154 ---VFVQSHVRA-HVELM-------WLLSSATPIGWLNKMIQFKE-------------------KSHK--AGG------- 194 (389)
Q Consensus 154 ---if~QS~v~e-h~eL~-------w~L~~~~~~~~L~R~~~~K~-------------------k~~~--~~~------- 194 (389)
.|+||+.-+ |.+.. ..+.|+++-.+++.+..-.. ..+. .+.
T Consensus 120 ~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k 199 (535)
T PLN02627 120 EYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFR 199 (535)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEE
Confidence 599999532 22211 12568999888765422100 0000 000
Q ss_pred ----CCc-----ccccch----------------hhHHHhhhh---hhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcC
Q 016437 195 ----ENV-----GVALLT----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGG 246 (389)
Q Consensus 195 ----~~~-----~~gll~----------------YPvLQAADI---Ll~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~ 246 (389)
+.+ --|.+. ||..+=|-+ .+.+.++|.=|+|....--.=.-|.+.|+
T Consensus 200 ~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg----- 274 (535)
T PLN02627 200 VPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALG----- 274 (535)
T ss_pred cCCCCceEEEeeeeeeeeeccccCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcC-----
Confidence 000 012222 222221111 22368889999998776655555666665
Q ss_pred ccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC------CCHHHHHHHhhhc
Q 016437 247 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVIANKIKRC 311 (389)
Q Consensus 247 ~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~------Dspe~I~kKI~kA 311 (389)
++.|+..+. +.|.+- || +||||.+. .+.+. -.|+.|.+-+...
T Consensus 275 -------------~~~P~f~Hl---pli~~~-~g-~KLSKR~~----~~~v~~~r~~G~~PeAi~nyla~L 323 (535)
T PLN02627 275 -------------FPMPRFAHV---SLILAP-DR-SKLSKRHG----ATSVGQFREMGYLPDAMVNYLALL 323 (535)
T ss_pred -------------CCCCeEEEc---cceeCC-CC-CccccccC----CccHHHHHHCCCCHHHHHHHHHHh
Confidence 556766665 557774 66 79999974 34443 2788888877654
No 41
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.26 E-value=5.5e-06 Score=79.93 Aligned_cols=162 Identities=21% Similarity=0.166 Sum_probs=101.9
Q ss_pred EEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCc
Q 016437 82 VSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (389)
Q Consensus 82 ~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v 160 (389)
=.|-.|||.+||||...++.+|+--+. +..++.-|-|...-.. .........+.+++.++|++|+ .+++||+.
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~----~~~~~~~~~i~~dL~wLGl~~d--~~~~qS~r 78 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTK----RPDPEAYDMIPEDLEWLGVKWD--EVVIASDR 78 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcc----cchHHHHHHHHHHHHHcCCCCC--Cccchhcc
Confidence 346678999999999999999975543 4456667888743210 1244455678899999999999 57999985
Q ss_pred h-hhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhh---hhhhcCCcEEeecCcchHHHHHHHHH
Q 016437 161 R-AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTREL 236 (389)
Q Consensus 161 ~-eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAA---DILl~~adiVpvG~DQ~qhleLtRdi 236 (389)
- .+.+..=.|- ++-..|. ....+ + . ...||..+=| |=.+.+.++|.-|+|-..+-..=.-|
T Consensus 79 ~~~y~~~~~~Li--------~~G~aY~--~~~~~-~-~---~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l 143 (240)
T cd09287 79 IELYYEYARKLI--------EMGGAYV--HPRTG-S-K---YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYI 143 (240)
T ss_pred HHHHHHHHHHHH--------HcCCccc--CcccC-C-c---EEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHH
Confidence 3 3333211111 1112221 00111 1 1 1234555433 44456899999999998887777777
Q ss_pred HHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCC
Q 016437 237 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (389)
Q Consensus 237 A~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~ 288 (389)
.+.|+ ++.|...+. ++|.. +| +||||.+
T Consensus 144 ~~~Lg------------------~~~P~~~H~---pll~~--~~-~kLSKR~ 171 (240)
T cd09287 144 YEYFG------------------WEYPETIHW---GRLKI--EG-GKLSTSK 171 (240)
T ss_pred HHHcC------------------CCCCcEEee---eeecC--CC-Ceecccc
Confidence 77765 455766655 44543 45 7999997
No 42
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.25 E-value=3.3e-06 Score=70.56 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=44.3
Q ss_pred EEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCCCHHHHHHHHHHHHHH
Q 016437 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAI 141 (389)
Q Consensus 81 i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~ 141 (389)
+++|-.+ |.+|+||+.+ ++.+.++++ .+++.++|.|+.+...+...++++.....+.
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHHHHH
Confidence 5678888 8999999987 788988874 6899999999988655666666665555443
No 43
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.18 E-value=3.1e-05 Score=77.35 Aligned_cols=194 Identities=20% Similarity=0.138 Sum_probs=114.9
Q ss_pred cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchhh-
Q 016437 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (389)
Q Consensus 86 qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~eh- 163 (389)
.|||.|||||...|+.+|..... +..+++-|-|... .....+....+..++..+||+++ -..|.||+..+.
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~------~R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~Y 81 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDP------ERCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEIY 81 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSST------TTCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHHH
T ss_pred CCCCCcccchhHHHHHHHHHHhccCceEEEecccccc------ccchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHHH
Confidence 58899999999999999976644 5567778888743 22344566778888999999998 358889996432
Q ss_pred hHHH-------HHHhccCcHHHHhchhhH------------HHH--------HH--h-hCC----------C-C-----c
Q 016437 164 VELM-------WLLSSATPIGWLNKMIQF------------KEK--------SH--K-AGG----------E-N-----V 197 (389)
Q Consensus 164 ~eL~-------w~L~~~~~~~~L~R~~~~------------K~k--------~~--~-~~~----------~-~-----~ 197 (389)
.+.. ..+.|+++-.+++....- ... .. . .+. + . .
T Consensus 82 ~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~ 161 (314)
T PF00749_consen 82 QEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDL 161 (314)
T ss_dssp HHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEET
T ss_pred HHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccC
Confidence 1111 124588888777654322 110 00 0 000 0 0 0
Q ss_pred cccc-------chhhHHHhhhh------------hhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCc
Q 016437 198 GVAL-------LTYPVLMASDI------------LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258 (389)
Q Consensus 198 ~~gl-------l~YPvLQAADI------------Ll~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~ 258 (389)
-.|. +-.+|++-+|. ...+.++|.=|+|-...-..=.-|.+.||
T Consensus 162 v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg----------------- 224 (314)
T PF00749_consen 162 VRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALG----------------- 224 (314)
T ss_dssp TTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCT-----------------
T ss_pred cceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhC-----------------
Confidence 0111 22333443333 33479999999999888887778888877
Q ss_pred cccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcc------cCCCCHHHHHHHhhhc
Q 016437 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI------NLLDPKDVIANKIKRC 311 (389)
Q Consensus 259 ~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I------~L~Dspe~I~kKI~kA 311 (389)
++.|.-.+. +.+.+. +| +|+||++.. ..| .-.++|+.+-.-+++.
T Consensus 225 -~~~P~~~H~---pl~l~~-~g-~kLSKR~~~--~~i~~~~~r~~g~~~~~~l~~L~~l 275 (314)
T PF00749_consen 225 -WPPPPYAHL---PLILNE-DG-KKLSKRKGA--KSIELGDYREWGDPPEATLNYLARL 275 (314)
T ss_dssp -SSS-EEEEE---EEEEET-TS-SBSSTTCSH--HBHHHHHHHHTT-THHHHHHHHHHT
T ss_pred -CCCcceEee---eeeecC-CC-cEechhhcc--ccccccccccCCCCHHHHHHHHHHh
Confidence 444665555 446664 66 799999842 232 3346777777766655
No 44
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.18 E-value=9.9e-06 Score=84.14 Aligned_cols=191 Identities=20% Similarity=0.202 Sum_probs=116.1
Q ss_pred cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchh-h
Q 016437 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (389)
Q Consensus 86 qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e-h 163 (389)
.|||.|||||...|+.+|.-.+. +.+++.-|-|... .....+....+..++..+||+++. .|+||+.-+ |
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~------~R~~~e~~~~I~~~L~WlGl~wDe--~y~QSeR~~~Y 78 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDK------ERNIEGKDKEILEILNLFGISWDK--LVYQSENLKFH 78 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC------CcCChHHHHHHHHHHHHcCCCCCC--CeehhccHHHH
Confidence 48999999999999999986654 5677888988744 223345567788888999999995 699999532 2
Q ss_pred hHHHH-------HHhccCcHHHHhchhhHH----------HHHHh--------hCC---------C-Cc-----ccccch
Q 016437 164 VELMW-------LLSSATPIGWLNKMIQFK----------EKSHK--------AGG---------E-NV-----GVALLT 203 (389)
Q Consensus 164 ~eL~w-------~L~~~~~~~~L~R~~~~K----------~k~~~--------~~~---------~-~~-----~~gll~ 203 (389)
.+..= .+-|+++-.+++.+.+-. -..+. .+. + .+ -.|.+.
T Consensus 79 ~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~~~g~~~~iR~k~p~~~~~f~D~v~G~i~ 158 (433)
T PRK12410 79 RQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVLNCNKPFVVRLKKPNHTMSFTDAIKGEVS 158 (433)
T ss_pred HHHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHHhcCCCeEEEEEcCCCceeeeeccceeEE
Confidence 22111 156899998886543210 00000 000 0 00 001111
Q ss_pred ----------------hhHHHh---hhhhhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCC-
Q 016437 204 ----------------YPVLMA---SDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP- 263 (389)
Q Consensus 204 ----------------YPvLQA---ADILl~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P- 263 (389)
+|..+= .|=.+.+.++|.=|+|....--.=..|-+.|+ ++.|
T Consensus 159 ~~~~~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg------------------~~~pp 220 (433)
T PRK12410 159 FEPDEIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALG------------------YNKEI 220 (433)
T ss_pred eccccCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcC------------------CCCCC
Confidence 122221 12223468889999998776655555656655 4443
Q ss_pred ccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC------CHHHHHHHhhhc
Q 016437 264 EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (389)
Q Consensus 264 ~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D------spe~I~kKI~kA 311 (389)
+-.+. +.+.+- || +||||.+. ...+.+ .|+.|.+-+...
T Consensus 221 ~f~Hl---pli~~~-~g-~KLSKR~~----~~~v~~~r~~G~~PeAi~n~l~~l 265 (433)
T PRK12410 221 TYAHL---PIILNE-EG-KKMSKRDN----ASSVKWLLEQGFLPSAIANYLILL 265 (433)
T ss_pred eEEEe---eeeeCC-CC-CeeecccC----hhhHHHHHHCCCCHHHHHHHHHHh
Confidence 55555 446675 67 79999974 233332 778887777654
No 45
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.16 E-value=5.7e-06 Score=87.58 Aligned_cols=177 Identities=16% Similarity=0.117 Sum_probs=109.8
Q ss_pred eEEEee--cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 80 ~i~sGi--qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
.|.+=| .|||.|||||...++.+|.-.+. +..+++-|-|.-. .....+....+..++..+||+++. +++
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp------~R~~~e~~~~I~~dL~WLGl~wD~--~~~ 82 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNP------SKEKAEFEESIIEDLGKIEIKPDS--VSF 82 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCC------CccchHHHHHHHHHHHHhCCCCCC--Ccc
Confidence 355555 57799999999999999975544 5567778888743 234456677888899999999984 789
Q ss_pred cCCchh-hhHHHHH-------HhccCcHHHHhchh--h----------------HHHHHH-hhCC-------------CC
Q 016437 157 QSHVRA-HVELMWL-------LSSATPIGWLNKMI--Q----------------FKEKSH-KAGG-------------EN 196 (389)
Q Consensus 157 QS~v~e-h~eL~w~-------L~~~~~~~~L~R~~--~----------------~K~k~~-~~~~-------------~~ 196 (389)
||+.-+ +.+.+-. +.|.++-.+|.... + |.++.+ .... .+
T Consensus 83 qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n 162 (523)
T PLN03233 83 TSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDN 162 (523)
T ss_pred ccccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCC
Confidence 999633 3222222 45889988875321 1 110000 0000 00
Q ss_pred cccccc------------------hhhHHHhhhhh---hcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCC
Q 016437 197 VGVALL------------------TYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (389)
Q Consensus 197 ~~~gll------------------~YPvLQAADIL---l~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~ 255 (389)
.+++-+ .||..+=|-.+ +.+.++|.-|.|...+-..-.-|.+.|+
T Consensus 163 ~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg-------------- 228 (523)
T PLN03233 163 GTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALG-------------- 228 (523)
T ss_pred CCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhC--------------
Confidence 111110 24544433322 2478999999999888887777777776
Q ss_pred CCccccCCccccCCCCcccccCCCCCCcCCCCC
Q 016437 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (389)
Q Consensus 256 ~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~ 288 (389)
++.|.... + . ..++ +| .||||+.
T Consensus 229 ----~~~P~~~~-f--~-rln~-~~-~kLSKR~ 251 (523)
T PLN03233 229 ----LRRPRIHA-F--A-RMNF-MN-TVLSKRK 251 (523)
T ss_pred ----CCCCeeee-e--E-EECC-CC-CcccccC
Confidence 44576422 2 2 4465 56 5999995
No 46
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.05 E-value=2.8e-05 Score=83.48 Aligned_cols=179 Identities=14% Similarity=0.116 Sum_probs=111.2
Q ss_pred eEEEee--cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 80 ~i~sGi--qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
.|.+=| .|||.|||||...++.+|.-.+. +..+++-|-|.-. .....+....+..++.++||+++.- +++
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp------~R~~~e~~d~IleDL~WLGl~wDe~-~~~ 124 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNP------SKEKEHFEQAILDDLATLGVSWDVG-PTY 124 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCC------cccCHHHHHHHHHHHHHCCCCCCCc-eee
Confidence 355555 67799999999999999976654 5577888888732 2245567778889999999999853 788
Q ss_pred cCCchh-hhHHHHH-------HhccCcHHHHhchh------hHHHHH--------Hhh--CC--C--------------C
Q 016437 157 QSHVRA-HVELMWL-------LSSATPIGWLNKMI------QFKEKS--------HKA--GG--E--------------N 196 (389)
Q Consensus 157 QS~v~e-h~eL~w~-------L~~~~~~~~L~R~~------~~K~k~--------~~~--~~--~--------------~ 196 (389)
||+.-+ |.+.+-. +.|.++-.++.... .|.+.. +.+ +. + +
T Consensus 125 QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n 204 (601)
T PTZ00402 125 SSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNEN 204 (601)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCC
Confidence 999643 2222221 45788877664321 111110 000 00 0 0
Q ss_pred ccccc------------------chhhHHHhhhh---hhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCC
Q 016437 197 VGVAL------------------LTYPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (389)
Q Consensus 197 ~~~gl------------------l~YPvLQAADI---Ll~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~ 255 (389)
.+++- -.||.++=|-. .+.+.++|.-|.|...+-..=.-|.+.|+
T Consensus 205 ~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg-------------- 270 (601)
T PTZ00402 205 KAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG-------------- 270 (601)
T ss_pred CCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC--------------
Confidence 00000 13344333322 22468999999999888887777777775
Q ss_pred CCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 016437 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (389)
Q Consensus 256 ~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~ 289 (389)
++.|...+. ++ .++ +| .||||+..
T Consensus 271 ----~~~P~~~h~---~r-Ln~-~g-~kLSKRkl 294 (601)
T PTZ00402 271 ----IRKPIVEDF---SR-LNM-EY-SVMSKRKL 294 (601)
T ss_pred ----CCCceEEEE---ee-EcC-CC-CcccccCC
Confidence 445766555 44 466 67 59999973
No 47
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.97 E-value=3.8e-05 Score=81.49 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=54.7
Q ss_pred CceEEEeecCCCcchhhhHHHHHHH--HHHHHc--cCcE-EEEEeecc--------------------cccCCCC-----
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKN--WIALQN--SYET-LFFIVDLH--------------------AITLPYD----- 127 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~--~v~lQ~--~~~~-~i~IaDlh--------------------Alt~~~d----- 127 (389)
+..|-||+-|||.+||||+..++.- |.+... |.++ +|+.+|.| .++.--|
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 5788999999999999999887742 333332 6675 67899998 2222112
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCch
Q 016437 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (389)
Q Consensus 128 ~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~ 161 (389)
..-..++-....+.+-.+|++. +++.|++..
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~~---e~~s~te~Y 129 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGINP---EFIRASKQY 129 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCeE---EEEEHHHhh
Confidence 2334444556666777789965 588888753
No 48
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.97 E-value=6.1e-05 Score=80.69 Aligned_cols=181 Identities=19% Similarity=0.158 Sum_probs=112.7
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
+.+...+=.|||.+||||...++.+|.-.+. +..+++-|-|...-+ .....+....+.+++.++|++|+ .+++
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~----~R~~~e~~~~I~edL~wLGl~wD--~~~~ 174 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRT----KRPDPEAYDMILEDLKWLGVKWD--EVVI 174 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCc----ccchHHHHHHHHHHHHHcCCCCC--CccC
Confidence 3555667788899999999999999875543 456777888874322 12234455678888999999998 4789
Q ss_pred cCCchh-hhHHHH-------HHhccCcHHHHhchhh------HH-----HHH---Hh--hC------------C----CC
Q 016437 157 QSHVRA-HVELMW-------LLSSATPIGWLNKMIQ------FK-----EKS---HK--AG------------G----EN 196 (389)
Q Consensus 157 QS~v~e-h~eL~w-------~L~~~~~~~~L~R~~~------~K-----~k~---~~--~~------------~----~~ 196 (389)
||+.-+ +.+..= .+.|.++-.++.+... +. +.. +. .| . .+
T Consensus 175 qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n 254 (567)
T PRK04156 175 QSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPN 254 (567)
T ss_pred cccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCC
Confidence 999632 222111 1557777766643211 00 000 00 00 0 00
Q ss_pred cc------------------cccchhhHHHh---hhhhhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCC
Q 016437 197 VG------------------VALLTYPVLMA---SDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (389)
Q Consensus 197 ~~------------------~gll~YPvLQA---ADILl~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~ 255 (389)
.+ -+...||.++= .|..+.+.|+|.-|.|...+-..=..+.+.|+
T Consensus 255 ~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg-------------- 320 (567)
T PRK04156 255 PSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG-------------- 320 (567)
T ss_pred CCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC--------------
Confidence 00 01123565543 34445689999999999888887777777776
Q ss_pred CCccccCCccccCCCCcccccCCCCCCcCCCCC
Q 016437 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (389)
Q Consensus 256 ~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~ 288 (389)
++.|...+. ++|. + +| .|||||.
T Consensus 321 ----~~~P~~~H~---~~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 321 ----WEYPETIHY---GRLK-I-EG-FVLSTSK 343 (567)
T ss_pred ----CCCceEEEc---ceec-C-CC-ceeeccc
Confidence 344776665 4564 4 66 5999997
No 49
>PLN02907 glutamate-tRNA ligase
Probab=97.92 E-value=5.1e-05 Score=83.52 Aligned_cols=177 Identities=15% Similarity=0.116 Sum_probs=107.7
Q ss_pred eEEEee--cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 80 ~i~sGi--qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
.|.+=| .|||.|||||...++.+|.-.+. +..+++-|-|.-. .....+....+..++..+|+++++ +++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp------~r~~~e~~~~I~~dl~wLG~~~d~--~~~ 284 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNP------SKESDEFVENILKDIETLGIKYDA--VTY 284 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCC------CcCChHHHHHHHHHHHHcCCCCCC--ccc
Confidence 456666 67799999999999999975543 5567778888743 123345667788888999999995 689
Q ss_pred cCCchh-hhHHHHH-------HhccCcHHHHhchh--h----------------HHHHHH-hh-C------------CCC
Q 016437 157 QSHVRA-HVELMWL-------LSSATPIGWLNKMI--Q----------------FKEKSH-KA-G------------GEN 196 (389)
Q Consensus 157 QS~v~e-h~eL~w~-------L~~~~~~~~L~R~~--~----------------~K~k~~-~~-~------------~~~ 196 (389)
||+.-+ +.+.+-. +.|.++..++.... . |.++.. .. + ..+
T Consensus 285 qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n 364 (722)
T PLN02907 285 TSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPN 364 (722)
T ss_pred ccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCC
Confidence 999643 2222211 45778777664321 0 100000 00 0 001
Q ss_pred cccccc------------------hhhHHHhhhhh---hcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCC
Q 016437 197 VGVALL------------------TYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (389)
Q Consensus 197 ~~~gll------------------~YPvLQAADIL---l~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~ 255 (389)
.++.-+ .||..+=|-.+ +.+.++|.-|.|...+-..-.-|.+.++
T Consensus 365 ~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg-------------- 430 (722)
T PLN02907 365 KSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMG-------------- 430 (722)
T ss_pred CCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcC--------------
Confidence 111111 15555544332 2478999999999988887777777776
Q ss_pred CCccccCCccccCCCCcccccCCCCCCcCCCCC
Q 016437 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (389)
Q Consensus 256 ~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~ 288 (389)
++.|..... +++ ++ ++ .||||+.
T Consensus 431 ----~~~p~~~~f---~~l-~~-~~-~~lSKR~ 453 (722)
T PLN02907 431 ----LRKVHIWEF---SRL-NF-VY-TLLSKRK 453 (722)
T ss_pred ----CCCCeeEEE---EEE-cC-CC-ccccccc
Confidence 344532222 343 55 56 5999996
No 50
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.87 E-value=0.00043 Score=72.57 Aligned_cols=74 Identities=8% Similarity=-0.033 Sum_probs=47.7
Q ss_pred CCceEE-EeecCCCcchhhhHHHHHH--HHHHHH--ccCcEEEEEe-ecccc-cC------CCCHHH-HHHHHHHHHHHH
Q 016437 77 VKKRIV-SGVQPTGSIHLGNYLGAIK--NWIALQ--NSYETLFFIV-DLHAI-TL------PYDTQQ-LSKATRETAAIY 142 (389)
Q Consensus 77 ~~~~i~-sGiqPTG~lHLGnylgai~--~~v~lQ--~~~~~~i~Ia-DlhAl-t~------~~d~~~-i~~~~~~~~a~~ 142 (389)
...++| +|--|.|.+||||..+.+. -+.+.+ .|+++++... |-|.- +. ..++.+ ..+++..+.+++
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345555 9999999999999987652 133333 3788887655 33321 10 124444 344677888999
Q ss_pred HHcCC-CCC
Q 016437 143 LACGI-DNS 150 (389)
Q Consensus 143 lA~Gl-Dp~ 150 (389)
.++|+ .|+
T Consensus 102 ~~Lgi~~~d 110 (463)
T PRK00260 102 DALNVLPPD 110 (463)
T ss_pred HHcCCCCCC
Confidence 99999 555
No 51
>PLN02859 glutamine-tRNA ligase
Probab=97.87 E-value=4.9e-05 Score=83.69 Aligned_cols=176 Identities=12% Similarity=0.078 Sum_probs=108.8
Q ss_pred EEEee--cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016437 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (389)
Q Consensus 81 i~sGi--qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 157 (389)
|.+=| .|||.|||||...++.+|.-.+. +..+++-|-|.-- .....+....+..++..+|++|++ +++|
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp------~r~~~e~~~~I~edL~WLG~~~d~--~~~q 336 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNP------EAEKKEYIDHIEEIVEWMGWEPFK--ITYT 336 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCC------CccchHHHHHHHHHHHHcCCCCCC--cccc
Confidence 44555 67899999999999999975544 5567778888632 123445677788888999999984 7899
Q ss_pred CCch-hhhHHHHH-------HhccCcHHHHhchhh------------------HHHHHHh-hC-------------CCCc
Q 016437 158 SHVR-AHVELMWL-------LSSATPIGWLNKMIQ------------------FKEKSHK-AG-------------GENV 197 (389)
Q Consensus 158 S~v~-eh~eL~w~-------L~~~~~~~~L~R~~~------------------~K~k~~~-~~-------------~~~~ 197 (389)
|+.- ++-+.+-. +.|.++-.+|..... |.++... .. ..+.
T Consensus 337 Sd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n~ 416 (788)
T PLN02859 337 SDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNF 416 (788)
T ss_pred cHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhccCCeEEEEeccCCCCCc
Confidence 9875 23332221 458888877643221 1111000 00 0000
Q ss_pred c-----cc-------------cchhhHHHhhhhh---hcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCC
Q 016437 198 G-----VA-------------LLTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256 (389)
Q Consensus 198 ~-----~g-------------ll~YPvLQAADIL---l~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~ 256 (389)
+ +| ...||..-=|-.+ +.+.++|..|.|...+-..=.-|.+.|+
T Consensus 417 ~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg--------------- 481 (788)
T PLN02859 417 NMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLG--------------- 481 (788)
T ss_pred eeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcC---------------
Confidence 0 00 1235655433332 2478999999998888777777777765
Q ss_pred CccccCCccccCCCCcccccCCCCCCcCCCCC
Q 016437 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (389)
Q Consensus 257 ~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~ 288 (389)
+..|...+. + ..++ +| .||||+.
T Consensus 482 ---~~~P~~~~f---~-rLn~-~~-t~LSKRk 504 (788)
T PLN02859 482 ---LYQPYVWEY---S-RLNV-TN-TVMSKRK 504 (788)
T ss_pred ---CCCCcEEee---e-eECC-CC-CcccCcC
Confidence 344655544 4 3466 66 5999997
No 52
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.78 E-value=8.7e-05 Score=69.70 Aligned_cols=152 Identities=17% Similarity=0.183 Sum_probs=80.9
Q ss_pred EEeecCCCcchhhhHHHHH-----HHHHHHHccCcEEE-EEeecccc-cCC-----CCHHHHHH-HHHHHHHHHHHcCCC
Q 016437 82 VSGVQPTGSIHLGNYLGAI-----KNWIALQNSYETLF-FIVDLHAI-TLP-----YDTQQLSK-ATRETAAIYLACGID 148 (389)
Q Consensus 82 ~sGiqPTG~lHLGnylgai-----~~~v~lQ~~~~~~i-~IaDlhAl-t~~-----~d~~~i~~-~~~~~~a~~lA~GlD 148 (389)
||+--|+|.+||||..+++ .+|.++ .|+++.+ ...|.|.. +.. ..+.++.+ ....+..+|.++|+.
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~-~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~ 84 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEF-LGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVR 84 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHH-CCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 5667789999999998865 234333 2788754 34433322 210 12333333 446778888999998
Q ss_pred CCCcEEEEcCCchhhhHHHHH-Hh-c-cC--cHHHH-hchhhHHHHHHhhCCCCc---ccccchhh---HHHhhhhhhcC
Q 016437 149 NSKASVFVQSHVRAHVELMWL-LS-S-AT--PIGWL-NKMIQFKEKSHKAGGENV---GVALLTYP---VLMASDILLYQ 216 (389)
Q Consensus 149 p~k~~if~QS~v~eh~eL~w~-L~-~-~~--~~~~L-~R~~~~K~k~~~~~~~~~---~~gll~YP---vLQAADILl~~ 216 (389)
++ .++.-|+......-.|- |. . +. .-+.+ -....|++ ..+-+ +=|..+|. +-.+.|=+.++
T Consensus 85 ~d--~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~-----~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~ 157 (212)
T cd00671 85 FD--VWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGD-----DKDRVLVRSDGTYTYFTRDIAYHLDKFERG 157 (212)
T ss_pred Cc--eecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhCC-----CCCeEEEECCCCccchHHHHHHHHHHHhcC
Confidence 76 35555553221111111 10 0 00 00000 00001100 00000 12666665 22222223367
Q ss_pred CcEE--eecCcchHHHHHHHHHHHHhh
Q 016437 217 SDFV--PVGEDQKQHLELTRELAERVN 241 (389)
Q Consensus 217 adiV--pvG~DQ~qhleLtRdiA~rfN 241 (389)
.|.+ .+|.||..|+.--+.+++.++
T Consensus 158 ~~~~i~v~g~~~~~~~~~~~~~~~~lg 184 (212)
T cd00671 158 ADKIIYVVGADHHGHFKRLFAALELLG 184 (212)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHcC
Confidence 8988 999999999999999999988
No 53
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.73 E-value=5.2e-05 Score=80.17 Aligned_cols=184 Identities=18% Similarity=0.187 Sum_probs=99.8
Q ss_pred EEEeecCCCcchhhhHHHHHH--HHHHHHc--cCcEEE--EEeecccccCC------CCHHHHH-HHHHHHHHHHHHcCC
Q 016437 81 IVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLF--FIVDLHAITLP------YDTQQLS-KATRETAAIYLACGI 147 (389)
Q Consensus 81 i~sGiqPTG~lHLGnylgai~--~~v~lQ~--~~~~~i--~IaDlhAlt~~------~d~~~i~-~~~~~~~a~~lA~Gl 147 (389)
-++|--|+|.+|+||..+++. -+.++.+ |+++.. -+.|+-..+.. ..++.+. .....+.++|..+|+
T Consensus 116 e~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI 195 (507)
T PRK01611 116 EYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGV 195 (507)
T ss_pred EecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 367889999999999988763 2334333 777643 56777543320 1233333 345677889999999
Q ss_pred CCCCcEEEEcCCchhhhHHHHHHhccCcHHHHhch-hhH-HHH------HHhhCCC-Cc----ccccchhhHHHhhhhhh
Q 016437 148 DNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM-IQF-KEK------SHKAGGE-NV----GVALLTYPVLMASDILL 214 (389)
Q Consensus 148 Dp~k~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~-~~~-K~k------~~~~~~~-~~----~~gll~YPvLQAADILl 214 (389)
.++ .+++.|+........+++. +|... ..| ... ...++++ .. +=|..+|. +.||-+
T Consensus 196 ~~D--~~~~es~~~~~~~~~~~~~------~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~~Y~---t~Dia~ 264 (507)
T PRK01611 196 HFD--VWFSESELYYNGKVDEVVE------DLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTYTYF---TRDIAY 264 (507)
T ss_pred eee--EEeecCcchhcchHHHHHH------HHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCccch---HHHHHH
Confidence 886 3455554321112222221 11110 111 000 0011100 00 12555663 345543
Q ss_pred c-------CCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCC--c-cccCCCCcccccCCCCCCcC
Q 016437 215 Y-------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--E-PLIPPAGARVMSLTDGLSKM 284 (389)
Q Consensus 215 ~-------~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P--~-~ii~~~~~~lpgL~dg~~KM 284 (389)
. +--+-.+|.||..|+.-...+++.++.. .+ + .++... ..+-+ .+| +||
T Consensus 265 ~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~------------------~~~~~~~~h~~~-glv~~-~~g-~KM 323 (507)
T PRK01611 265 HLYKFERFDRVIYVVGADHHGHFKRLKAALKALGYD------------------PDALEVLLHQMV-GLVRG-GEG-VKM 323 (507)
T ss_pred HHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCCC------------------cccceEEEEEEE-EeeEC-CCC-Ccc
Confidence 2 2333499999999999999999998722 11 1 222221 22323 355 699
Q ss_pred CCCCCCCCCcccCCC
Q 016437 285 SKSAPSDQSRINLLD 299 (389)
Q Consensus 285 SKS~~~~~s~I~L~D 299 (389)
|||. ||.|.+.|
T Consensus 324 SkR~---Gn~i~l~d 335 (507)
T PRK01611 324 STRA---GNVVTLDD 335 (507)
T ss_pred cCCC---CceeEHHH
Confidence 9997 78997765
No 54
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=5.5e-05 Score=79.39 Aligned_cols=81 Identities=23% Similarity=0.385 Sum_probs=48.7
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHH---HHHHHc-cCcE-EEEEeecccccC--CC---CHHHHHHH------------
Q 016437 77 VKKRIVSGVQPTGSIHLGNYLGAIKN---WIALQN-SYET-LFFIVDLHAITL--PY---DTQQLSKA------------ 134 (389)
Q Consensus 77 ~~~~i~sGiqPTG~lHLGnylgai~~---~v~lQ~-~~~~-~i~IaDlhAlt~--~~---d~~~i~~~------------ 134 (389)
...+|=|||.|||.+||||+.=++.- ...|.+ ++++ +|+++|.+-=+. +. +++.+.++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 45789999999999999998655421 223333 5564 667777654332 21 22333322
Q ss_pred ------H----HHHHHHHHHcCCCCCCcEEEEcCCc
Q 016437 135 ------T----RETAAIYLACGIDNSKASVFVQSHV 160 (389)
Q Consensus 135 ------~----~~~~a~~lA~GlDp~k~~if~QS~v 160 (389)
+ +.....+--+|+++ +++.+|+.
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~ 131 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATEL 131 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce---EEEEhHHh
Confidence 2 33444455569876 48888875
No 55
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.55 E-value=0.0002 Score=72.83 Aligned_cols=83 Identities=22% Similarity=0.390 Sum_probs=38.3
Q ss_pred hcCCcEEeecCcchH---HHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCC
Q 016437 214 LYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 290 (389)
Q Consensus 214 l~~adiVpvG~DQ~q---hleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~ 290 (389)
.++.|+.|.|.|... -...+.+||+++ || .+.|..+.-+ .-++ +|.+|||||.
T Consensus 232 ~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i---~g--------------~~pP~~~~YE----~~~~-~g~~kmSsSk-- 287 (360)
T PF01921_consen 232 ALGVDFEPFGKDHASPGGSYDTSKRIAREI---LG--------------YEPPVPFPYE----FFLD-KGGGKMSSSK-- 287 (360)
T ss_dssp HTT-SEEEEEHHHHCTTSHHHHHHHHHHHC---C-------------------EEEEE------EEE-S-----------
T ss_pred hcCceeccCCCccCCCCCChhhHHHHHHHH---hC--------------CCCCCCCCee----EEEe-CCCcccccCC--
Confidence 357999999999999 999999999553 33 3346555433 2244 4556999997
Q ss_pred CCCcccCCC-----CHHHHHHHhhhcccCCCCCcCcCC
Q 016437 291 DQSRINLLD-----PKDVIANKIKRCKTDSSAGLEFDN 323 (389)
Q Consensus 291 ~~s~I~L~D-----spe~I~kKI~kA~TD~~~~~~~~~ 323 (389)
+|.|.+.| +|+.++-=+ +.|.+...+.++.
T Consensus 288 -G~~~t~~e~L~~~~PE~lr~l~--~~~~P~~~~~~~~ 322 (360)
T PF01921_consen 288 -GNGITPEEWLEYAPPESLRYLM--ARTKPNKAKDFSF 322 (360)
T ss_dssp ------HHHHHTTS-HHHHHHHH--HCS-TTS-EEE--
T ss_pred -CCccCHHHHHHhcCHHHHHHHH--cccCCCcceEecc
Confidence 67887765 777776444 4455555555553
No 56
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.52 E-value=0.00047 Score=68.16 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=40.5
Q ss_pred cCCCcchhhhHHH-----HHHHHHHHHccCcEE-EEEeecccccCC-------C-------------C-HHHHHHHHHHH
Q 016437 86 QPTGSIHLGNYLG-----AIKNWIALQNSYETL-FFIVDLHAITLP-------Y-------------D-TQQLSKATRET 138 (389)
Q Consensus 86 qPTG~lHLGnylg-----ai~~~v~lQ~~~~~~-i~IaDlhAlt~~-------~-------------d-~~~i~~~~~~~ 138 (389)
-|+|.+||||+.+ ++.++.+++ |+++. ++-.|.|.+-.. . . .+-.+++...+
T Consensus 10 ~~~g~~HiGH~~~~i~~D~i~R~~r~~-G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (312)
T cd00668 10 YANGSLHLGHALTHIIADFIARYKRMR-GYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEH 88 (312)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhC-CCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHH
Confidence 4689999999988 444555543 67764 455688775321 0 1 12233455667
Q ss_pred HHHHHHcCCCCC
Q 016437 139 AAIYLACGIDNS 150 (389)
Q Consensus 139 ~a~~lA~GlDp~ 150 (389)
.+++.++|++.+
T Consensus 89 ~~~l~~lgI~~D 100 (312)
T cd00668 89 KEDFRRLGISYD 100 (312)
T ss_pred HHHHHHhCcccc
Confidence 788889998654
No 57
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.48 E-value=0.00025 Score=70.55 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=49.8
Q ss_pred cCCCcchhhhHHHHHH-----HHHHHHccCcEEE-EEeecccccC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCC
Q 016437 86 QPTGSIHLGNYLGAIK-----NWIALQNSYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSK 151 (389)
Q Consensus 86 qPTG~lHLGnylgai~-----~~v~lQ~~~~~~i-~IaDlhAlt~-------~~d~~~-i~~~~~~~~a~~lA~GlDp~k 151 (389)
-|+|.+||||..+.+. ++.++ .|+++.+ +-.|-|..-. ..++.+ ..++...+.+++.++|+.++
T Consensus 10 y~ng~~HiGH~~~~v~~Dv~~R~lr~-~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d- 87 (314)
T cd00812 10 YPSGALHVGHVRTYTIGDIIARYKRM-QGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD- 87 (314)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHH-cCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee-
Confidence 4689999999988663 23332 3678744 5566664321 124433 34566788889999999876
Q ss_pred cEEEEcCCchhhhHHHH
Q 016437 152 ASVFVQSHVRAHVELMW 168 (389)
Q Consensus 152 ~~if~QS~v~eh~eL~w 168 (389)
...+.....|+|.+..+
T Consensus 88 ~~~~~~t~~~~~~~~v~ 104 (314)
T cd00812 88 WRREFTTCDPEYYKFTQ 104 (314)
T ss_pred cccccccCCHHHHHHHH
Confidence 22344455666666544
No 58
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.38 E-value=0.00059 Score=72.93 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=67.1
Q ss_pred eEEEee--cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 80 ~i~sGi--qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
.|.+=| .|||.|||||...++.+|.-.+. +..+++-|-|... .....+....+..++..+||+|+. .+++
T Consensus 29 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~------~r~~~e~~~~I~~dL~wLGi~~d~-~~~~ 101 (554)
T PRK05347 29 RVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNP------EKEDQEYVDSIKEDVRWLGFDWSG-ELRY 101 (554)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCC------CcCChHHHHHHHHHHHHcCCCCCC-Ccee
Confidence 355555 67799999999999999975544 5567778888632 123445677888889999999953 3789
Q ss_pred cCCchh-hhHHHHH-------HhccCcHHHHhch
Q 016437 157 QSHVRA-HVELMWL-------LSSATPIGWLNKM 182 (389)
Q Consensus 157 QS~v~e-h~eL~w~-------L~~~~~~~~L~R~ 182 (389)
||+.-+ +-+.+.. +.|.++-.++++.
T Consensus 102 qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~ 135 (554)
T PRK05347 102 ASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREY 135 (554)
T ss_pred eecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHH
Confidence 998643 4333332 4588888776543
No 59
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.30 E-value=0.00065 Score=72.28 Aligned_cols=90 Identities=9% Similarity=-0.032 Sum_probs=63.9
Q ss_pred cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchh-h
Q 016437 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (389)
Q Consensus 86 qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e-h 163 (389)
.|||.|||||...++.+|.-.+. +..+++-|-|... .....+....+.+++..+|++++. .+++||+.-+ +
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~------~r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~~~~~~ 80 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNP------VKEDPEYVESIKRDVEWLGFKWEG-KIRYSSDYFDEL 80 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCc------ccCChHHHHHHHHHHHHcCCCCCC-CceEccccHHHH
Confidence 58999999999999999975544 5567778888743 223445677888889999999953 3788998643 3
Q ss_pred hHHHHH-------HhccCcHHHHhch
Q 016437 164 VELMWL-------LSSATPIGWLNKM 182 (389)
Q Consensus 164 ~eL~w~-------L~~~~~~~~L~R~ 182 (389)
.+.+-. +.|.++-.+|++.
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~ 106 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREY 106 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHh
Confidence 222211 4588888776544
No 60
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.23 E-value=0.00078 Score=72.15 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=66.2
Q ss_pred eEEEee--cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 80 ~i~sGi--qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
.|.+=| .|||.|||||...++.+|.-.+. +..+++-|-|... .....+....+..++..+|+++++ +++
T Consensus 51 kv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp------~r~~~e~~~~I~~dL~wLGi~~D~--~~~ 122 (574)
T PTZ00437 51 KPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNP------ETEEQVYIDAIMEMVKWMGWKPDW--VTF 122 (574)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCc------cccChHHHHHHHHHHHHcCCCCCC--CCc
Confidence 345555 67799999999999999875544 5567778888742 123445677888899999999985 568
Q ss_pred cCCchh-hhHHHHH-------HhccCcHHHHhc
Q 016437 157 QSHVRA-HVELMWL-------LSSATPIGWLNK 181 (389)
Q Consensus 157 QS~v~e-h~eL~w~-------L~~~~~~~~L~R 181 (389)
||+..+ +-+.+-. +.|.++-.++++
T Consensus 123 qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~ 155 (574)
T PTZ00437 123 SSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQ 155 (574)
T ss_pred CchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHH
Confidence 998744 2222221 458888887754
No 61
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.20 E-value=0.00094 Score=74.02 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=66.6
Q ss_pred eEEEee--cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 80 ~i~sGi--qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
.|.+=| .|||.|||||...++.+|.-.+. +..+++-|-|...- ....+....+..++..+|++++.. +|+
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~------r~~~e~~~~I~~dl~wLG~~wd~~-~~~ 103 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPE------TEDTEYVEAIKDDVRWLGFDWGEH-LYY 103 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCC------cCChHHHHHHHHHHHHcCCCCCCC-ceE
Confidence 455655 66799999999999999875543 55777788886331 234456778888899999998753 789
Q ss_pred cCCchh-hhHHHH-------HHhccCcHHHHhch
Q 016437 157 QSHVRA-HVELMW-------LLSSATPIGWLNKM 182 (389)
Q Consensus 157 QS~v~e-h~eL~w-------~L~~~~~~~~L~R~ 182 (389)
||+.-+ |.+.+- .+.|.++-.++.+.
T Consensus 104 qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~ 137 (771)
T PRK14703 104 ASDYFERMYAYAEQLIKMGLAYVDSVSEEEIREL 137 (771)
T ss_pred eecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHH
Confidence 999632 222111 15688887776544
No 62
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.13 E-value=0.0011 Score=71.08 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=65.5
Q ss_pred eEEEee--cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 80 ~i~sGi--qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
.|.+=| .|||.|||||...++.+|.-.+. +..+++-|-|.-. .....+....+..++.++|++|+ .+++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp------~R~~~e~~~~I~edL~wLGi~~d--~~~~ 164 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDP------RRVKPEAYDMILEDLDWLGVKGD--EVVY 164 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCc------ccccHHHHHHHHHHHHHcCCCCC--cccc
Confidence 466666 56799999999999999875543 5567778888733 22344567788889999999998 4789
Q ss_pred cCCchh-hhHHHH-------HHhccCcHHHHh
Q 016437 157 QSHVRA-HVELMW-------LLSSATPIGWLN 180 (389)
Q Consensus 157 QS~v~e-h~eL~w-------~L~~~~~~~~L~ 180 (389)
||+.-+ +.+..= .+.|.++-.++.
T Consensus 165 qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 165 QSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred ccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 999632 322221 156888887775
No 63
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.12 E-value=0.0056 Score=58.01 Aligned_cols=71 Identities=11% Similarity=0.016 Sum_probs=45.7
Q ss_pred CceEEEeecCCCcchhhhHHHHHH-----HHHHHHccCcEEEEE-eecccccC-------CCCHH-HHHHHHHHHHHHHH
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIK-----NWIALQNSYETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAIYL 143 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~-----~~v~lQ~~~~~~i~I-aDlhAlt~-------~~d~~-~i~~~~~~~~a~~l 143 (389)
.....+|--|-|.+||||....+. .|.++ .|+++++.. .|-|..=. ..++. -.++++..+.+++.
T Consensus 21 ~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~-~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~ 99 (213)
T cd00672 21 VTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLED-LGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMK 99 (213)
T ss_pred ceEEEeCCccCCCcccccchhHHHHHHHHHHHHh-cCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 355667888889999999876552 33333 267776643 34443211 12454 44556778888999
Q ss_pred HcCCCC
Q 016437 144 ACGIDN 149 (389)
Q Consensus 144 A~GlDp 149 (389)
++|+.+
T Consensus 100 ~l~i~~ 105 (213)
T cd00672 100 ALNVLP 105 (213)
T ss_pred HcCCCC
Confidence 999986
No 64
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=96.66 E-value=0.029 Score=59.04 Aligned_cols=73 Identities=12% Similarity=-0.047 Sum_probs=46.7
Q ss_pred CceEEEeecCCCcchhhhHHHHHHH--HHHHH--ccCcEEEEEe-ecccc-c-C-----CCCHHHH-HHHHHHHHHHHHH
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKN--WIALQ--NSYETLFFIV-DLHAI-T-L-----PYDTQQL-SKATRETAAIYLA 144 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~--~v~lQ--~~~~~~i~Ia-DlhAl-t-~-----~~d~~~i-~~~~~~~~a~~lA 144 (389)
.....+|.-|-|.+||||..+.+.- +.+.+ .|+++.+..+ |-|.- + . ..+|.++ ..++..+..++.+
T Consensus 22 v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~ 101 (465)
T TIGR00435 22 VKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKA 101 (465)
T ss_pred ceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999886631 22332 3788866544 44432 1 0 2244444 4456778889999
Q ss_pred cCCCCC
Q 016437 145 CGIDNS 150 (389)
Q Consensus 145 ~GlDp~ 150 (389)
+|+.++
T Consensus 102 LgI~~d 107 (465)
T TIGR00435 102 LNVLPP 107 (465)
T ss_pred hCCCCC
Confidence 999754
No 65
>PLN02946 cysteine-tRNA ligase
Probab=95.41 E-value=0.14 Score=55.23 Aligned_cols=73 Identities=15% Similarity=0.052 Sum_probs=42.9
Q ss_pred CCceEE-EeecCCCcchhhhHHHHHH--HHHHHH--ccCcEEEE--Eeeccc-ccC-----CCCHHH-HHHHHHHHHHHH
Q 016437 77 VKKRIV-SGVQPTGSIHLGNYLGAIK--NWIALQ--NSYETLFF--IVDLHA-ITL-----PYDTQQ-LSKATRETAAIY 142 (389)
Q Consensus 77 ~~~~i~-sGiqPTG~lHLGnylgai~--~~v~lQ--~~~~~~i~--IaDlhA-lt~-----~~d~~~-i~~~~~~~~a~~ 142 (389)
.+.++| .|.-+-+.+||||....+. -+.+.. .|+++.|. +.|.-- ++. ..++.+ .++++..+.+++
T Consensus 79 ~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~ 158 (557)
T PLN02946 79 GKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDM 158 (557)
T ss_pred CceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344444 4555558899999988652 122332 37887654 333321 111 235544 445677888899
Q ss_pred HHcCCCC
Q 016437 143 LACGIDN 149 (389)
Q Consensus 143 lA~GlDp 149 (389)
.++|+.+
T Consensus 159 ~~LnI~~ 165 (557)
T PLN02946 159 AYLHCLP 165 (557)
T ss_pred HHCCCCC
Confidence 9999853
No 66
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=94.47 E-value=0.32 Score=48.66 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=37.3
Q ss_pred EEeecCCCcchhhhHHHHHH-----HHHHHHccCcEEE--EEeecccccC------CCCHHH-HHHHHHHHHHHHHHcCC
Q 016437 82 VSGVQPTGSIHLGNYLGAIK-----NWIALQNSYETLF--FIVDLHAITL------PYDTQQ-LSKATRETAAIYLACGI 147 (389)
Q Consensus 82 ~sGiqPTG~lHLGnylgai~-----~~v~lQ~~~~~~i--~IaDlhAlt~------~~d~~~-i~~~~~~~~a~~lA~Gl 147 (389)
..|.-+=..+||||+...+. .+++. .++++.+ =|.|+.--+. ..++.+ .+..+.+...++.++|+
T Consensus 13 ~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~-~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv 91 (300)
T PF01406_consen 13 VCGPTVYDYAHIGHARTYVFFDVLRRYLEY-LGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNV 91 (300)
T ss_dssp EEEEBTTS--BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT-
T ss_pred cCCCCCCCCCCCcceeeeeeHHHHHHHHHH-cCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCC
Confidence 45777778899999987662 33322 3777755 3777754332 224444 44466788888888888
Q ss_pred CCC
Q 016437 148 DNS 150 (389)
Q Consensus 148 Dp~ 150 (389)
.|-
T Consensus 92 ~~p 94 (300)
T PF01406_consen 92 LPP 94 (300)
T ss_dssp ---
T ss_pred CCC
Confidence 764
No 67
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=94.30 E-value=0.07 Score=55.62 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=66.5
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE----
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 153 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~---- 153 (389)
.|+-..=-|||.+|||-...|+.|++-..+ +.+++.-|-|..- ...+......+..++..+||+||..-
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq------~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG 107 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQ------KRLIRGSEEAIYEDLKWANLDWDEGPGVGG 107 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccc------cccccchHHHHHHHHHhcCCCcccCCCcCC
Confidence 455555678899999999999988875544 5567777888642 23344455677788999999999764
Q ss_pred ---EEEcCCchhh-hHHHHH-------HhccCcHHHHhch
Q 016437 154 ---VFVQSHVRAH-VELMWL-------LSSATPIGWLNKM 182 (389)
Q Consensus 154 ---if~QS~v~eh-~eL~w~-------L~~~~~~~~L~R~ 182 (389)
=|.||+-.+. ..-+.. +.|+++-.+|..+
T Consensus 108 ~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~l 147 (524)
T KOG1149|consen 108 PFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLL 147 (524)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHH
Confidence 3789985432 111111 4588888776543
No 68
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=93.40 E-value=0.28 Score=53.92 Aligned_cols=85 Identities=21% Similarity=0.372 Sum_probs=55.6
Q ss_pred CceEEEee-cCCCcchhhhHHHHHH-----HHHHHHccCcEEEEEe-ecccccC-------CCCHHH-HHHHHHHHHHHH
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIK-----NWIALQNSYETLFFIV-DLHAITL-------PYDTQQ-LSKATRETAAIY 142 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~-----~~v~lQ~~~~~~i~Ia-DlhAlt~-------~~d~~~-i~~~~~~~~a~~ 142 (389)
+..|.+++ -|+|.+||||..+.+. .|.++ .|+++++..+ |-|..-. ..++.+ ..+++..+.++|
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~-~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 81 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRM-RGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHh-cCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45677777 6999999999987653 33333 3788877554 4444321 224444 455778888999
Q ss_pred HHcCCCCCCcEEEEcCCchhhhHH
Q 016437 143 LACGIDNSKASVFVQSHVRAHVEL 166 (389)
Q Consensus 143 lA~GlDp~k~~if~QS~v~eh~eL 166 (389)
.++|++++ .|....-++|.+.
T Consensus 82 ~~l~i~~d---~f~rtt~~~h~~~ 102 (673)
T PRK00133 82 AGFGISFD---NYGSTHSEENREL 102 (673)
T ss_pred HHhCCCCC---CCccCCcHHHHHH
Confidence 99999887 3555555555443
No 69
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.91 E-value=0.34 Score=52.40 Aligned_cols=86 Identities=24% Similarity=0.374 Sum_probs=58.5
Q ss_pred CceEEEee-cCCCcchhhhHHHHHH--HHHHHHc--cCcEEE-EEeecccccC-------CCCHHHHH-HHHHHHHHHHH
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQQLS-KATRETAAIYL 143 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~--~~v~lQ~--~~~~~i-~IaDlhAlt~-------~~d~~~i~-~~~~~~~a~~l 143 (389)
+..|-|.+ -|.|.+||||....|. -|.++|. |++++| +=.|-|..-. ..+|+++- ++......+|.
T Consensus 6 ~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~ 85 (558)
T COG0143 6 KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFK 85 (558)
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34444444 5789999999987764 3667765 788755 5667777532 23665554 56677889999
Q ss_pred HcCCCCCCcEEEEcCCchhhhHH
Q 016437 144 ACGIDNSKASVFVQSHVRAHVEL 166 (389)
Q Consensus 144 A~GlDp~k~~if~QS~v~eh~eL 166 (389)
+++|+-+ .|....-++|.++
T Consensus 86 ~l~IsfD---~F~rTt~~~h~~~ 105 (558)
T COG0143 86 ALNISFD---NFIRTTSPEHKEL 105 (558)
T ss_pred HhCCccc---ccccCCCHHHHHH
Confidence 9999876 5666666656543
No 70
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=92.69 E-value=0.33 Score=51.84 Aligned_cols=83 Identities=24% Similarity=0.398 Sum_probs=52.9
Q ss_pred eEEEeecCC--CcchhhhHHHH-H-----HHHHHHHccCcEEEE-EeecccccC-------CCCHHH-HHHHHHHHHHHH
Q 016437 80 RIVSGVQPT--GSIHLGNYLGA-I-----KNWIALQNSYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIY 142 (389)
Q Consensus 80 ~i~sGiqPT--G~lHLGnylga-i-----~~~v~lQ~~~~~~i~-IaDlhAlt~-------~~d~~~-i~~~~~~~~a~~ 142 (389)
.+++.-=|+ |.+||||..+. + .++.+++ |+++++. =.|-|..-. ..++.+ ..+++..+.+++
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~-G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLK-GNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHHHHHHHHHHhc-CCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 444555555 99999999885 3 4455554 7787664 446664422 224444 466788899999
Q ss_pred HHcCCCCCCcEEEEcCCchhhhHH
Q 016437 143 LACGIDNSKASVFVQSHVRAHVEL 166 (389)
Q Consensus 143 lA~GlDp~k~~if~QS~v~eh~eL 166 (389)
.++|++++. |....-|+|.+.
T Consensus 84 ~~l~i~~d~---~~~t~~~~~~~~ 104 (556)
T PRK12268 84 KKLGISYDL---FTRTTSPNHHEV 104 (556)
T ss_pred HHcCCcCCC---CcCCCCHHHHHH
Confidence 999999873 444444555443
No 71
>PLN02224 methionine-tRNA ligase
Probab=92.33 E-value=0.57 Score=51.24 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=55.8
Q ss_pred CceEEEee-cCCCcchhhhHHHHHH-----HHHHHHccCcEEE-EEeeccccc--C-----CCCH-HHHHHHHHHHHHHH
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIK-----NWIALQNSYETLF-FIVDLHAIT--L-----PYDT-QQLSKATRETAAIY 142 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~-----~~v~lQ~~~~~~i-~IaDlhAlt--~-----~~d~-~~i~~~~~~~~a~~ 142 (389)
+..|-+++ -|+|.+||||..+.+. +|.++ .|++++| .=.|-|..- . ..++ +.+++++..+.+.|
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~-~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~ 148 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRL-LGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLW 148 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHh-cCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 35677777 7899999999988663 34333 2788765 566777632 1 1233 55666777888899
Q ss_pred HHcCCCCCCcEEEEcCCchhhhH
Q 016437 143 LACGIDNSKASVFVQSHVRAHVE 165 (389)
Q Consensus 143 lA~GlDp~k~~if~QS~v~eh~e 165 (389)
.++|++++ .|....-|+|.+
T Consensus 149 ~~l~I~~D---~f~rTt~~~h~~ 168 (616)
T PLN02224 149 KDLDIAYD---KFIRTTDPKHEA 168 (616)
T ss_pred HHcCCCCC---cCeeCCCHHHHH
Confidence 99999987 344444455544
No 72
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=92.32 E-value=0.58 Score=48.30 Aligned_cols=76 Identities=22% Similarity=0.373 Sum_probs=47.6
Q ss_pred cCCCcchhhhHHHHHH-----HHHHHHccCcEEE-EEeecccccC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCC
Q 016437 86 QPTGSIHLGNYLGAIK-----NWIALQNSYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSK 151 (389)
Q Consensus 86 qPTG~lHLGnylgai~-----~~v~lQ~~~~~~i-~IaDlhAlt~-------~~d~~~-i~~~~~~~~a~~lA~GlDp~k 151 (389)
-|.|.|||||....+. .|.+++ |++++| .=.|-|..-. ..+|++ +.++...+.++|.++||+.+
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~-G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D- 86 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLR-GHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD- 86 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHT-T-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S-
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhc-ccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc-
Confidence 5789999999987652 344443 677754 6789998753 236654 45567888899999999997
Q ss_pred cEEEEcCCchhhhH
Q 016437 152 ASVFVQSHVRAHVE 165 (389)
Q Consensus 152 ~~if~QS~v~eh~e 165 (389)
.|+++.-++|.+
T Consensus 87 --~F~rTt~~~h~~ 98 (391)
T PF09334_consen 87 --RFIRTTDDRHKE 98 (391)
T ss_dssp --EEEETTSHHHHH
T ss_pred --ceeCCCCHHHHH
Confidence 577766555644
No 73
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=90.67 E-value=0.38 Score=54.80 Aligned_cols=59 Identities=27% Similarity=0.275 Sum_probs=36.4
Q ss_pred hhcCCcEEeecCcch---HHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 016437 213 LLYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (389)
Q Consensus 213 Ll~~adiVpvG~DQ~---qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~ 289 (389)
..+-+|+...|.||. .|-.+-..++- + |. +.|..++.. ..+... +| +|||||.
T Consensus 542 ~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~----g~--------------~P~k~vl~H--G~vld~-~G-~KMSKSl- 597 (912)
T PRK05743 542 LGYPADLYLEGSDQHRGWFQSSLLTSVAT-R----GK--------------APYKQVLTH--GFTVDG-KG-RKMSKSL- 597 (912)
T ss_pred cCCCceEEEecccccchHHHHHHHHHHHh-c----CC--------------CccceeEEe--eeEECC-CC-CCCCCCC-
Confidence 456699999999997 44555554443 2 21 223344332 345554 56 7999997
Q ss_pred CCCCcccC
Q 016437 290 SDQSRINL 297 (389)
Q Consensus 290 ~~~s~I~L 297 (389)
||.|..
T Consensus 598 --GNvIdP 603 (912)
T PRK05743 598 --GNVIDP 603 (912)
T ss_pred --CCcCCH
Confidence 788853
No 74
>PLN02610 probable methionyl-tRNA synthetase
Probab=90.67 E-value=1.2 Score=50.30 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=56.5
Q ss_pred CceEEEee-cCCCcchhhhHHHH-HH--HHHHHHc--cCcEEE-EEeecccccC-------CCCHHHH-HHHHHHHHHHH
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGA-IK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQQL-SKATRETAAIY 142 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylga-i~--~~v~lQ~--~~~~~i-~IaDlhAlt~-------~~d~~~i-~~~~~~~~a~~ 142 (389)
+..|.|.+ -|+|.+||||..|. +. -|.+.+. |++++| +=.|-|..-. ..+|+++ .++...+..+|
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~ 97 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVY 97 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44555555 56799999999973 42 2444443 788866 4557777643 2355444 44566778899
Q ss_pred HHcCCCCCCcEEEEcCCchhhhHHHH
Q 016437 143 LACGIDNSKASVFVQSHVRAHVELMW 168 (389)
Q Consensus 143 lA~GlDp~k~~if~QS~v~eh~eL~w 168 (389)
.++||+.+ .|....-++|.+..+
T Consensus 98 ~~l~i~~D---~f~rT~~~~h~~~vq 120 (801)
T PLN02610 98 DWFDISFD---KFGRTSTPQQTEICQ 120 (801)
T ss_pred HHcCCccc---cCccCCCHHHHHHHH
Confidence 99999987 344555566655444
No 75
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.76 E-value=0.78 Score=49.28 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=46.2
Q ss_pred CceEEEee--cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 016437 78 KKRIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKAS 153 (389)
Q Consensus 78 ~~~i~sGi--qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~-d~~~i~~~~~~~~a~~lA~GlDp~k~~ 153 (389)
.-.|.+-| +|||.+||||.-.|+.||.-.|. ..++++-.-| |+|. +.++.+ ..+..++--+||.|++
T Consensus 198 ~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDD----TNPaKE~~eFe---~~IleDl~~LgIkpd~-- 268 (712)
T KOG1147|consen 198 MGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDD----TNPAKENEEFE---DVILEDLSLLGIKPDR-- 268 (712)
T ss_pred cCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecC----CCcchhhHHHH---HHHHHHHHHhCcCcce--
Confidence 34566666 78999999999999988764454 2234444444 2322 333333 3455566667999996
Q ss_pred EEEcCCc
Q 016437 154 VFVQSHV 160 (389)
Q Consensus 154 if~QS~v 160 (389)
+=.-||+
T Consensus 269 ~TyTSDy 275 (712)
T KOG1147|consen 269 VTYTSDY 275 (712)
T ss_pred eeechhh
Confidence 4445665
No 76
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=88.73 E-value=1.8 Score=48.78 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=47.9
Q ss_pred CceEEEeecCC--CcchhhhHHHHHHH--HHHHHc--cCcEEEE-EeecccccC-------CCCH-HHHHHHHHHHHHHH
Q 016437 78 KKRIVSGVQPT--GSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAITL-------PYDT-QQLSKATRETAAIY 142 (389)
Q Consensus 78 ~~~i~sGiqPT--G~lHLGnylgai~~--~v~lQ~--~~~~~i~-IaDlhAlt~-------~~d~-~~i~~~~~~~~a~~ 142 (389)
+..+++|. |+ |.+|+||.++.+.. +.+.|. |+++++. =-|-|.+-. ..++ +-..+++..+..++
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~ 111 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL 111 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 56777776 66 99999999886632 334443 7887654 456665532 1233 44556778889999
Q ss_pred HHcCCCCC
Q 016437 143 LACGIDNS 150 (389)
Q Consensus 143 lA~GlDp~ 150 (389)
.++|+..+
T Consensus 112 ~~lGi~~D 119 (805)
T PRK00390 112 KSLGFSYD 119 (805)
T ss_pred HHhCCccc
Confidence 99999544
No 77
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=88.71 E-value=2.3 Score=43.88 Aligned_cols=44 Identities=14% Similarity=-0.010 Sum_probs=27.3
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCH
Q 016437 285 SKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTK 344 (389)
Q Consensus 285 SKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~ 344 (389)
-|-..+.+|+|.+.+++.+.+.++++. .......|++++|..+.
T Consensus 220 ~KmgKS~~~~i~l~~~~~~~~i~~~d~----------------~D~~~~Ki~k~~t~~~~ 263 (377)
T TIGR00234 220 EKMGKSGGGAVSLDEGKYDFYQFWINT----------------PDEDVKKILKLFTFLGL 263 (377)
T ss_pred CCccCCCCCcccCCccHhhhhhhhcCC----------------cHHHHHHHHHHcCCCcH
Confidence 344555567888888886777666554 22455666666665544
No 78
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=86.16 E-value=0.84 Score=52.02 Aligned_cols=60 Identities=30% Similarity=0.275 Sum_probs=35.7
Q ss_pred cCCcEEeecCcchH-HHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (389)
Q Consensus 215 ~~adiVpvG~DQ~q-hleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s 293 (389)
|-+|+...|.||.. |+-+. .|++...-. .-+.|..++.. ..+.. +| +|||||. ||
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~-----~~~~~a~~~-----------~~~~Pk~v~~h--G~vl~--~G-~KMSKS~---GN 584 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFF-----IFNHVAIFP-----------EEKWPRGIVVN--GFVLL--EG-KKMSKSK---GN 584 (897)
T ss_pred CCceEEEeeeccCccHHHHH-----HHHHHHhcC-----------CCccCcEEEEc--ceEEE--CC-ccccCcC---CC
Confidence 45799999999976 66655 244332100 01335444432 33432 66 7999997 78
Q ss_pred cccCC
Q 016437 294 RINLL 298 (389)
Q Consensus 294 ~I~L~ 298 (389)
.|.+.
T Consensus 585 vVdp~ 589 (897)
T PRK12300 585 VIPLR 589 (897)
T ss_pred CCCHH
Confidence 88643
No 79
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=86.15 E-value=2.4 Score=44.61 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=41.1
Q ss_pred cCCCcchhhhHHHHHHH--HHHHH--ccCcEEE-EEeecccccC-------CCCHH-HHHHHHHHHHHHHHHcCCCCC
Q 016437 86 QPTGSIHLGNYLGAIKN--WIALQ--NSYETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNS 150 (389)
Q Consensus 86 qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i-~IaDlhAlt~-------~~d~~-~i~~~~~~~~a~~lA~GlDp~ 150 (389)
-|+|.+||||..+.+.. +.+.+ .|+++.+ +-.|-|..-. ..++. ..+.+...+.+++.++|++++
T Consensus 11 ~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 11 YPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 45799999998775521 22333 3778755 4455554311 12443 444566788899999999887
No 80
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=86.11 E-value=1.9 Score=47.25 Aligned_cols=64 Identities=20% Similarity=0.348 Sum_probs=42.9
Q ss_pred cCCCcchhhhHHHHHH-----HHHHHHccCcEEE-EEeecccccC-------CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 016437 86 QPTGSIHLGNYLGAIK-----NWIALQNSYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNS 150 (389)
Q Consensus 86 qPTG~lHLGnylgai~-----~~v~lQ~~~~~~i-~IaDlhAlt~-------~~d~~~-i~~~~~~~~a~~lA~GlDp~ 150 (389)
-|+|.+||||..+.+. +|.+++ |++++| +=.|-|..-. ..++.+ +.++...+..+|.++|++++
T Consensus 14 y~ng~~HiGH~~~~~~aDv~~R~~r~~-G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D 91 (648)
T PRK12267 14 YPNGKPHIGHAYTTIAADALARYKRLQ-GYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYD 91 (648)
T ss_pred CCCCCcccccchHHHHHHHHHHHHHhc-CCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4569999999987663 333333 678755 6677776532 124544 44456788889999999887
No 81
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=85.71 E-value=1.6 Score=43.40 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=42.0
Q ss_pred cCCCcchhhhHHHHHH-----HHHHHHccCcEEE-EEeecccccC-------CCCHHHHHH-HHHHHHHHHHHcCCCCCC
Q 016437 86 QPTGSIHLGNYLGAIK-----NWIALQNSYETLF-FIVDLHAITL-------PYDTQQLSK-ATRETAAIYLACGIDNSK 151 (389)
Q Consensus 86 qPTG~lHLGnylgai~-----~~v~lQ~~~~~~i-~IaDlhAlt~-------~~d~~~i~~-~~~~~~a~~lA~GlDp~k 151 (389)
-|+|.+||||..+.+. ++.++ .|+++++ .=.|-|..-. ..+++++.+ +...+.+++.++|++++.
T Consensus 10 y~ng~~HlGH~~~~~~~Dv~~R~~r~-~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 10 YVNGVPHLGHLYGTVLADVFARYQRL-RGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHh-CCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 3469999999998653 23333 2677755 4456664421 225554444 566788899999998873
No 82
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=85.21 E-value=2.3 Score=42.92 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=36.9
Q ss_pred cCCCcchhhhHHHHHHH--HHHHH--ccCcEEE-EEeecccccC--------CCC---------H--------HHHHHHH
Q 016437 86 QPTGSIHLGNYLGAIKN--WIALQ--NSYETLF-FIVDLHAITL--------PYD---------T--------QQLSKAT 135 (389)
Q Consensus 86 qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i-~IaDlhAlt~--------~~d---------~--------~~i~~~~ 135 (389)
-|+|.+||||..+.+.. +.+.+ .|+++++ .-.|-|.+-. ..+ + +-..++.
T Consensus 11 ~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T cd00818 11 YANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALRYV 90 (338)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHHHH
Confidence 35799999999986532 22333 3678754 5556665532 011 1 2233345
Q ss_pred HHHHHHHHHcCC
Q 016437 136 RETAAIYLACGI 147 (389)
Q Consensus 136 ~~~~a~~lA~Gl 147 (389)
..+.+++.++|+
T Consensus 91 ~~~~~~~~~lgi 102 (338)
T cd00818 91 DEQEEQFQRLGV 102 (338)
T ss_pred HHHHHHHHHhCc
Confidence 566788888999
No 83
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=84.28 E-value=0.82 Score=46.11 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=11.4
Q ss_pred cCCcEEeecCcchH
Q 016437 215 YQSDFVPVGEDQKQ 228 (389)
Q Consensus 215 ~~adiVpvG~DQ~q 228 (389)
+.+|+.+.|.||..
T Consensus 251 ~p~d~~~~GkDii~ 264 (338)
T cd00818 251 FPADFILEGSDQTR 264 (338)
T ss_pred CCCeEEeecchHHh
Confidence 35789999999974
No 84
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=84.08 E-value=0.76 Score=47.10 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=37.5
Q ss_pred cCCCcchhhhHHHHHHH--HHHHHc--cCcEEE-EEeecccccC-----------C-----CCHHH--------HHHHHH
Q 016437 86 QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL-----------P-----YDTQQ--------LSKATR 136 (389)
Q Consensus 86 qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i-~IaDlhAlt~-----------~-----~d~~~--------i~~~~~ 136 (389)
-|+|.+||||..+.+.. +.+.+. |+++++ .=.|-|.+-. . .++++ ..++..
T Consensus 11 y~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (382)
T cd00817 11 NVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESGG 90 (382)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 36899999999876632 333433 678755 4556664311 0 12332 233455
Q ss_pred HHHHHHHHcCCC
Q 016437 137 ETAAIYLACGID 148 (389)
Q Consensus 137 ~~~a~~lA~GlD 148 (389)
.+.+++.++|+.
T Consensus 91 ~~~~~~~~lgi~ 102 (382)
T cd00817 91 KIREQLKRLGAS 102 (382)
T ss_pred HHHHHHHHhCce
Confidence 667788888974
No 85
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=83.67 E-value=1.5 Score=50.85 Aligned_cols=62 Identities=24% Similarity=0.390 Sum_probs=39.9
Q ss_pred hcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCcCCCCCCCCC
Q 016437 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (389)
Q Consensus 214 l~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P-~~ii~~~~~~lpgL~dg~~KMSKS~~~~~ 292 (389)
.|-+|+...|.||. ++=++|-++..+... | ..| ..++.. ..|..- +| +|||||. |
T Consensus 489 ~~P~d~~~~G~Dii-~~W~a~~l~~~~~~~-~---------------~~Pfk~V~~h--G~v~d~-~G-~KMSKSk---G 544 (1052)
T PRK14900 489 FYPTSVMETGHDII-FFWVARMMMMGLHFM-G---------------EVPFRTVYLH--PMVRDE-KG-QKMSKTK---G 544 (1052)
T ss_pred hCCchhhcccccHH-hHHHHHHHHHHHHhc-C---------------CCccceeEec--ccEECC-CC-CCccCCC---C
Confidence 35678999999998 566777777666532 1 234 323321 345442 56 7999997 7
Q ss_pred CcccCCC
Q 016437 293 SRINLLD 299 (389)
Q Consensus 293 s~I~L~D 299 (389)
|.|...|
T Consensus 545 NvIdP~d 551 (1052)
T PRK14900 545 NVIDPLV 551 (1052)
T ss_pred CCCCHHH
Confidence 8886544
No 86
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=83.39 E-value=1.6 Score=47.40 Aligned_cols=64 Identities=28% Similarity=0.362 Sum_probs=34.0
Q ss_pred cCCcEEeecCcchHHH-HHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQHL-ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (389)
Q Consensus 215 ~~adiVpvG~DQ~qhl-eLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s 293 (389)
|-+|+..-|.||.... ....-+...+ ++.. .| +..++. ..+... +| +|||||. +|
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l---~~~~-----------pf--k~v~~h---G~vld~-~G-~KMSKS~---GN 568 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVAL---FGKE-----------PF--KKVITH---GFVLDE-DG-RKMSKSK---GN 568 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHH---SSST-----------SB--SEEEEE-----EEET-TS-SB-BTTT---TB
T ss_pred CCcccccCCccchhhHHHHhHhhcccc---ccCC-----------ch--heeeec---cccccc-ce-eecccCC---Cc
Confidence 5689999999997643 2222222222 2221 13 334444 445554 67 7999997 78
Q ss_pred cccCCCCHHHHHH
Q 016437 294 RINLLDPKDVIAN 306 (389)
Q Consensus 294 ~I~L~Dspe~I~k 306 (389)
.|. |+++-+
T Consensus 569 vi~----p~~ii~ 577 (601)
T PF00133_consen 569 VID----PEDIIE 577 (601)
T ss_dssp --B----HHHHHH
T ss_pred ccC----HHHHHH
Confidence 884 555554
No 87
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=83.36 E-value=0.73 Score=49.74 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=49.0
Q ss_pred Hhhhhhhc------CCcE--EeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCcc-ccCCCCcccccCC
Q 016437 208 MASDILLY------QSDF--VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLT 278 (389)
Q Consensus 208 QAADILl~------~adi--VpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~-ii~~~~~~lpgL~ 278 (389)
.+.||-+. ++|. -.+|.||..|+.-...+++.++ ++.|.- .+... .++
T Consensus 312 ~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG------------------~~~~~~l~h~~~-~~V---- 368 (566)
T TIGR00456 312 LTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLG------------------FYKKKELIHLNF-GMV---- 368 (566)
T ss_pred chhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcC------------------CCCCCceEEEEE-EEE----
Confidence 45666442 3444 4799999999999999999987 223432 22221 122
Q ss_pred CCCCcCCCCCCCCCCcccCCCCHHHHHHHhhh
Q 016437 279 DGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (389)
Q Consensus 279 dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~k 310 (389)
++ .|||||. |+.|.+.|=.++..++...
T Consensus 369 ~~-~kmSkr~---Gn~V~~~dll~~~~~ra~~ 396 (566)
T TIGR00456 369 PL-GSMKTRR---GNVISLDNLLDEASKRAGN 396 (566)
T ss_pred EC-CCCCccC---CceeeHHHHHHHHHHHHHH
Confidence 33 5999997 7999988655555543333
No 88
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=83.29 E-value=0.61 Score=49.06 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=35.2
Q ss_pred cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCc
Q 016437 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (389)
Q Consensus 215 ~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~ 294 (389)
+.+|+...|.||...+-.. .+|.-+. .| .+.|..++.. ..+. + +| +|||||. +|.
T Consensus 253 ~~~D~~~~G~D~~~~h~~~-~~a~~~a--~~--------------~~~p~~~~~~--g~v~-~-~G-~KMSKS~---GN~ 307 (511)
T PRK11893 253 WPADVHLIGKDILRFHAVY-WPAFLMA--AG--------------LPLPKRVFAH--GFLT-L-DG-EKMSKSL---GNV 307 (511)
T ss_pred CCCcceEecccccccchhH-HHHHHHh--CC--------------CCCCCEEEee--ccEE-E-CC-eeecccC---CcE
Confidence 3578899999998842221 1222211 12 2346555543 3443 4 67 7999997 788
Q ss_pred ccCCC
Q 016437 295 INLLD 299 (389)
Q Consensus 295 I~L~D 299 (389)
|.+.|
T Consensus 308 i~~~d 312 (511)
T PRK11893 308 IDPFD 312 (511)
T ss_pred EcHHH
Confidence 87644
No 89
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=83.18 E-value=2.5 Score=44.94 Aligned_cols=64 Identities=25% Similarity=0.299 Sum_probs=41.0
Q ss_pred cCCCcchhhhHHHHHH-----HHHHHHccCcEEEE-EeecccccC-------CCCHHHHH-HHHHHHHHHHHHcCCCCC
Q 016437 86 QPTGSIHLGNYLGAIK-----NWIALQNSYETLFF-IVDLHAITL-------PYDTQQLS-KATRETAAIYLACGIDNS 150 (389)
Q Consensus 86 qPTG~lHLGnylgai~-----~~v~lQ~~~~~~i~-IaDlhAlt~-------~~d~~~i~-~~~~~~~a~~lA~GlDp~ 150 (389)
-|+|.+||||....+. ++.++ .|+++.+. =.|-|..-. ..++.++. .+...+.++|.++|++++
T Consensus 9 ~~ng~lHiGH~~~~~~aDvl~R~~r~-~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 9 YANGKPHLGHAYTTILADVYARYKRL-RGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHh-cCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3789999999987653 23333 27787654 445443321 22454444 456788889999999876
No 90
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=82.97 E-value=0.75 Score=52.65 Aligned_cols=73 Identities=26% Similarity=0.209 Sum_probs=42.5
Q ss_pred cCCcEEeecCcchH-HHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (389)
Q Consensus 215 ~~adiVpvG~DQ~q-hleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s 293 (389)
|-+|+...|.||.. |+.+.. |++...-. .-+.|..++.. ..+.. +| +|||||. ||
T Consensus 572 yP~D~~~~GkDii~~H~~~~i-----~~~~a~~~-----------~~~~Pk~i~~~--G~vl~--~G-~KMSKSl---GN 627 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYI-----FHHVAIFP-----------EKFWPRGIVVN--GYVML--EG-KKMSKSK---GN 627 (938)
T ss_pred CCceEEEEeeccccchHHHHH-----HHHHHcCC-----------ccccCcEEEEe--ceEEe--CC-ccccCcC---CC
Confidence 56899999999976 766552 33321100 00125444432 23432 66 7999997 78
Q ss_pred cccCCC-----CHHHHHHHhhhc
Q 016437 294 RINLLD-----PKDVIANKIKRC 311 (389)
Q Consensus 294 ~I~L~D-----spe~I~kKI~kA 311 (389)
.|.+.| .+|.++==+..+
T Consensus 628 vI~p~d~i~~yGaDalRl~Ll~~ 650 (938)
T TIGR00395 628 VLTLEQAVEKFGADVARLYIADA 650 (938)
T ss_pred CCCHHHHHHHcChHHHHHHHHhc
Confidence 887654 455555555544
No 91
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=82.92 E-value=1.9 Score=48.76 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=41.9
Q ss_pred cCCcEEeecCcchH-HHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (389)
Q Consensus 215 ~~adiVpvG~DQ~q-hleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s 293 (389)
+-+|+...|.||.. |+-.....+--+ +|. ..|..++.. ..+... +| +|||||. ||
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~~---~~~--------------~P~k~v~~h--G~vl~~-~G-~KMSKSk---GN 618 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTAL---FGQ--------------APYKNVITH--GFTLDE-KG-RKMSKSL---GN 618 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHH---cCC--------------CChHhhEec--ceEECC-CC-CCcCCCC---CC
Confidence 45899999999965 222222222111 121 123333322 344443 56 6999997 78
Q ss_pred cccCCC-----CHHHHHHHhhhcccCCCCCcCcC
Q 016437 294 RINLLD-----PKDVIANKIKRCKTDSSAGLEFD 322 (389)
Q Consensus 294 ~I~L~D-----spe~I~kKI~kA~TD~~~~~~~~ 322 (389)
.|.+.| .+|.++==+.++ +....+.|+
T Consensus 619 vI~p~d~i~~yGaDalR~~ll~~--~~~~D~~fs 650 (861)
T TIGR00392 619 VVDPLKVINKYGADILRLYVASS--DPWEDLRFS 650 (861)
T ss_pred CCCHHHHHHHcCHHHHHHHHHhC--CCCCCceEC
Confidence 886543 344444444433 333334443
No 92
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.37 E-value=5.3 Score=45.25 Aligned_cols=63 Identities=22% Similarity=0.082 Sum_probs=35.4
Q ss_pred CCcEEeecCcchHHHHHHHHHHHHhhhhh--cCccccccCCCCCccccCCcc-ccCCCCcccccCCCCCCcCCCCCCCCC
Q 016437 216 QSDFVPVGEDQKQHLELTRELAERVNYLY--GGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (389)
Q Consensus 216 ~adiVpvG~DQ~qhleLtRdiA~rfN~~y--g~~~~~~~~~~~~~~f~~P~~-ii~~~~~~lpgL~dg~~KMSKS~~~~~ 292 (389)
=.|+-.+|.|....+-| =-||+|+. ....|+ ..+|.. ++.. .+|.+- +| .|||||. +
T Consensus 526 PVD~yigG~ehavlHLl----y~rF~Hkal~d~g~~p---------~~epf~~L~~q--GmVl~~-~g-~KMSKSK---g 585 (814)
T COG0495 526 PVDLYIGGIEHAVLHLL----YFRFFHKALFDEGLVP---------KDEPFKKLITQ--GMVLGE-EG-EKMSKSK---G 585 (814)
T ss_pred ChheeecchhHHHHHHH----HHHHHHHHhcccCcCC---------Cccchhhhhcc--ceEEec-CC-Ccccccc---C
Confidence 47888899998875542 24566663 111111 122222 4433 345553 45 6999997 7
Q ss_pred CcccCC
Q 016437 293 SRINLL 298 (389)
Q Consensus 293 s~I~L~ 298 (389)
|.|.+.
T Consensus 586 N~v~p~ 591 (814)
T COG0495 586 NVVDPE 591 (814)
T ss_pred CCCCHH
Confidence 888543
No 93
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=81.95 E-value=9.8 Score=40.74 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=46.0
Q ss_pred CCceE-EEeecCCCcchhhhHHHHHH-----HHHHHHccCcEEEE--EeecccccC----------------CCCHHH-H
Q 016437 77 VKKRI-VSGVQPTGSIHLGNYLGAIK-----NWIALQNSYETLFF--IVDLHAITL----------------PYDTQQ-L 131 (389)
Q Consensus 77 ~~~~i-~sGiqPTG~lHLGnylgai~-----~~v~lQ~~~~~~i~--IaDlhAlt~----------------~~d~~~-i 131 (389)
.+.++ ..|.-+-+.+||||..+.+. .|+++ .|++++|. |.|+--+|. ..++.+ .
T Consensus 22 ~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~-~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a 100 (490)
T PRK14536 22 GHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHF-LGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIA 100 (490)
T ss_pred CceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHh-cCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHH
Confidence 34454 45777778999999988652 34332 37888775 677722221 124433 3
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 016437 132 SKATRETAAIYLACGIDNS 150 (389)
Q Consensus 132 ~~~~~~~~a~~lA~GlDp~ 150 (389)
.+++..+.+++.++|+.+.
T Consensus 101 ~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 101 AHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 4456778889999999764
No 94
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=81.27 E-value=3.9 Score=46.47 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=45.9
Q ss_pred ceEEEee-cCCCcchhhhHHHHHHH--HHHHH--ccCcEEEEE-eecccccC-------CCC-HHHHHHHHHHHHHHHHH
Q 016437 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQ--NSYETLFFI-VDLHAITL-------PYD-TQQLSKATRETAAIYLA 144 (389)
Q Consensus 79 ~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i~I-aDlhAlt~-------~~d-~~~i~~~~~~~~a~~lA 144 (389)
..+++|+ -|||.+|+||.++.+.. +.+.+ .|+++++.. -|-|.+-. ..+ .+...+++..+..++.+
T Consensus 31 ~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 110 (842)
T TIGR00396 31 YYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQA 110 (842)
T ss_pred EEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4566664 45699999999886632 33443 378887654 35565521 113 34455677888999999
Q ss_pred cCCCCC
Q 016437 145 CGIDNS 150 (389)
Q Consensus 145 ~GlDp~ 150 (389)
+|+..+
T Consensus 111 lG~~~D 116 (842)
T TIGR00396 111 LGFSYD 116 (842)
T ss_pred hCCccc
Confidence 997443
No 95
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=80.12 E-value=1.3 Score=45.81 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=41.6
Q ss_pred EEEeecCCCcchhhhHHHHHH-----HHHHHHccCcEEEEE-eeccc-cc-C-----CCCHHHH-HHHHHHHHHHHHHcC
Q 016437 81 IVSGVQPTGSIHLGNYLGAIK-----NWIALQNSYETLFFI-VDLHA-IT-L-----PYDTQQL-SKATRETAAIYLACG 146 (389)
Q Consensus 81 i~sGiqPTG~lHLGnylgai~-----~~v~lQ~~~~~~i~I-aDlhA-lt-~-----~~d~~~i-~~~~~~~~a~~lA~G 146 (389)
..+|--|=+.+||||..+.+. .|.++ .|+++.+.. .|-|. -+ . ..+++++ ++++.....++.++|
T Consensus 13 YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~-~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Ln 91 (384)
T PRK12418 13 YVCGITPYDATHLGHAATYLAFDLVNRVWRD-AGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALR 91 (384)
T ss_pred EecCCCCCCCCccchhHHHHHHHHHHHHHHH-cCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 345666668999999988662 34333 267876642 23332 11 1 2355444 446677888899999
Q ss_pred C-CCC
Q 016437 147 I-DNS 150 (389)
Q Consensus 147 l-Dp~ 150 (389)
+ .|+
T Consensus 92 i~~~~ 96 (384)
T PRK12418 92 VLPPR 96 (384)
T ss_pred CCCCC
Confidence 6 554
No 96
>PLN02563 aminoacyl-tRNA ligase
Probab=79.96 E-value=12 Score=43.42 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=47.1
Q ss_pred ceEEEee-cCCCc-chhhhHHHHHHH--HHHHH--ccCcEEEEE-eecccccC-------CCCH-HHHHHHHHHHHHHHH
Q 016437 79 KRIVSGV-QPTGS-IHLGNYLGAIKN--WIALQ--NSYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (389)
Q Consensus 79 ~~i~sGi-qPTG~-lHLGnylgai~~--~v~lQ--~~~~~~i~I-aDlhAlt~-------~~d~-~~i~~~~~~~~a~~l 143 (389)
..|++|+ -|+|. +|+||.++.+.. +.+++ .|+++++.. -|-|.+-. ...+ +...+++..+.+++.
T Consensus 112 ~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~ 191 (963)
T PLN02563 112 FYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLK 191 (963)
T ss_pred EEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHH
Confidence 4667776 56797 999999876532 33443 378876654 35566531 1122 345567788889999
Q ss_pred HcCC--CCCC
Q 016437 144 ACGI--DNSK 151 (389)
Q Consensus 144 A~Gl--Dp~k 151 (389)
.+|+ |.++
T Consensus 192 ~lG~s~DW~r 201 (963)
T PLN02563 192 SLGFSYDWDR 201 (963)
T ss_pred HhCcEeeCCC
Confidence 9995 6654
No 97
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=79.25 E-value=2.6 Score=47.87 Aligned_cols=61 Identities=30% Similarity=0.393 Sum_probs=38.4
Q ss_pred hcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCC--ccccCCCCcccccCCCCCCcCCCCCCCC
Q 016437 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (389)
Q Consensus 214 l~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P--~~ii~~~~~~lpgL~dg~~KMSKS~~~~ 291 (389)
.|-+|+...|.||... =++|-++..... .| ..| ..+++ ..+-.. +| +|||||.
T Consensus 471 ~~P~d~~~~G~Dii~~-W~a~~~~~~~~~-~~---------------~~Pfk~v~~h---G~v~d~-~G-~KMSKSl--- 525 (874)
T PRK05729 471 FYPTSVLVTGFDIIFF-WVARMIMMGLHF-TG---------------QVPFKDVYIH---GLVRDE-QG-RKMSKSK--- 525 (874)
T ss_pred cCCcccccccccccch-HHHHHHHHHHHh-cC---------------CCchhheEEe---eeEECC-CC-CCcccCC---
Confidence 3568999999999874 556666654431 11 235 22333 445554 67 7999997
Q ss_pred CCcccCCC
Q 016437 292 QSRINLLD 299 (389)
Q Consensus 292 ~s~I~L~D 299 (389)
||.|...|
T Consensus 526 GNvIdP~d 533 (874)
T PRK05729 526 GNVIDPLD 533 (874)
T ss_pred CCCCCHHH
Confidence 78886543
No 98
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=78.99 E-value=3 Score=47.98 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.2
Q ss_pred hhcCCcEEeecCcchH
Q 016437 213 LLYQSDFVPVGEDQKQ 228 (389)
Q Consensus 213 Ll~~adiVpvG~DQ~q 228 (389)
+.+-+|+...|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 4567899999999973
No 99
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=78.74 E-value=2.8 Score=43.00 Aligned_cols=58 Identities=28% Similarity=0.355 Sum_probs=33.4
Q ss_pred cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCC-c-cccCCCCcccccCCCCCCcCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (389)
Q Consensus 215 ~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P-~-~ii~~~~~~lpgL~dg~~KMSKS~~~~~ 292 (389)
+.+|+...|.||....-.. .++...- ..| ..| . .+.. ..+.++ +| +|||||. +
T Consensus 295 ~p~d~~~~G~D~~~~h~~~-~l~~~~~-~~g---------------~~p~~~v~~h---g~v~~~-~g-~KMSKS~---G 349 (382)
T cd00817 295 YPTSLLVTGHDIIFFWVAR-MIMRGLK-LTG---------------KLPFKEVYLH---GLVRDE-DG-RKMSKSL---G 349 (382)
T ss_pred CCCCeeeeecCcCchHHHH-HHHHHHH-hhC---------------CCchHHeEee---eeEECC-CC-CCccccC---C
Confidence 3579999999997544333 3333221 112 123 1 2222 345555 56 7999997 7
Q ss_pred CcccC
Q 016437 293 SRINL 297 (389)
Q Consensus 293 s~I~L 297 (389)
|.|.+
T Consensus 350 n~v~~ 354 (382)
T cd00817 350 NVIDP 354 (382)
T ss_pred CCCCH
Confidence 88864
No 100
>PLN02381 valyl-tRNA synthetase
Probab=77.74 E-value=3.4 Score=48.12 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=39.0
Q ss_pred hcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCc--cccCCCCcccccCCCCCCcCCCCCCCC
Q 016437 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSD 291 (389)
Q Consensus 214 l~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~--~ii~~~~~~lpgL~dg~~KMSKS~~~~ 291 (389)
.|-+|+..-|-||. |+=++|-++..+.. .| .+|. .+++ .+|.+- +| +|||||.
T Consensus 606 ~~P~d~~~~G~Dii-~~W~~rmi~~~~~~-~~---------------~~PFk~v~~h---G~V~D~-~G-~KMSKS~--- 660 (1066)
T PLN02381 606 FYPTSVLETGHDIL-FFWVARMVMMGMQL-GG---------------DVPFRKVYLH---PMIRDA-HG-RKMSKSL--- 660 (1066)
T ss_pred cCCCeeeeecchhh-hhHHHHHHHHHHHh-CC---------------CCchHHheec---ceEECC-CC-CCCCCCC---
Confidence 45699999999998 66677777655431 12 2342 3333 456664 67 6999997
Q ss_pred CCcccC
Q 016437 292 QSRINL 297 (389)
Q Consensus 292 ~s~I~L 297 (389)
||.|..
T Consensus 661 GNvIdP 666 (1066)
T PLN02381 661 GNVIDP 666 (1066)
T ss_pred CCCCCH
Confidence 788853
No 101
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=77.70 E-value=7.5 Score=43.25 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=43.8
Q ss_pred CCCceEE-EeecCCCcchhhhHHHHHH--HHHHHH--ccCcEEEE--Eeeccc-ccC-----CCCHHHH-HHHHHHHHHH
Q 016437 76 SVKKRIV-SGVQPTGSIHLGNYLGAIK--NWIALQ--NSYETLFF--IVDLHA-ITL-----PYDTQQL-SKATRETAAI 141 (389)
Q Consensus 76 ~~~~~i~-sGiqPTG~lHLGnylgai~--~~v~lQ--~~~~~~i~--IaDlhA-lt~-----~~d~~~i-~~~~~~~~a~ 141 (389)
+.+.++| .|.-+=+.+||||....+. -+.+.. .|+++.|. +.|.-- ++. ..++.++ .+++..+..+
T Consensus 246 ~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d 325 (699)
T PRK14535 246 PENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHED 325 (699)
T ss_pred CCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3344444 4666668899999988652 122332 37887664 333321 111 2245444 4466788888
Q ss_pred HHHcCCCCC
Q 016437 142 YLACGIDNS 150 (389)
Q Consensus 142 ~lA~GlDp~ 150 (389)
+.++|+.+.
T Consensus 326 ~~~LnI~~p 334 (699)
T PRK14535 326 ADALGVLRP 334 (699)
T ss_pred HHHcCCCCC
Confidence 999998764
No 102
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.05 E-value=5.4 Score=45.18 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=50.8
Q ss_pred CCceEEEee-cCCCcchhhhHHHHH-----HHHHHHHccCcEEEEEeecccccCC---------CCHH-HHHHHHHHHHH
Q 016437 77 VKKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQNSYETLFFIVDLHAITLP---------YDTQ-QLSKATRETAA 140 (389)
Q Consensus 77 ~~~~i~sGi-qPTG~lHLGnylgai-----~~~v~lQ~~~~~~i~IaDlhAlt~~---------~d~~-~i~~~~~~~~a 140 (389)
.+..|++=+ -|||.||+||..+-. ..+.+|| ||++.+-++ |||+=.| .+|. -...|+.++..
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~-GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ 111 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQ-GYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKK 111 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhc-CCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 466777766 799999999986533 2444444 688877665 7776433 2554 45668889999
Q ss_pred HHHHcCC--CCCC
Q 016437 141 IYLACGI--DNSK 151 (389)
Q Consensus 141 ~~lA~Gl--Dp~k 151 (389)
++.++|+ |.++
T Consensus 112 qlk~lG~siDW~R 124 (814)
T COG0495 112 QLKSLGFSIDWRR 124 (814)
T ss_pred HHHHhCCcccccc
Confidence 9999987 5554
No 103
>PLN02563 aminoacyl-tRNA ligase
Probab=74.97 E-value=4.2 Score=46.93 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=23.4
Q ss_pred hcCCcEEeecCcc-hHHHHHHHHHHHHhh
Q 016437 214 LYQSDFVPVGEDQ-KQHLELTRELAERVN 241 (389)
Q Consensus 214 l~~adiVpvG~DQ-~qhleLtRdiA~rfN 241 (389)
.+-+|+...|.|| .-||-.+|-....+.
T Consensus 614 w~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 614 WMPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred cCCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 4569999999999 689999998886655
No 104
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=74.73 E-value=2.1 Score=44.78 Aligned_cols=69 Identities=13% Similarity=0.020 Sum_probs=42.8
Q ss_pred eEEEeecCCCcchhhhHHHHHH--HHHHHHc--cCcEEEEEe-eccc--ccC-----CCCHHHH-HHHHHHHHHHHHHcC
Q 016437 80 RIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHA--ITL-----PYDTQQL-SKATRETAAIYLACG 146 (389)
Q Consensus 80 ~i~sGiqPTG~lHLGnylgai~--~~v~lQ~--~~~~~i~Ia-DlhA--lt~-----~~d~~~i-~~~~~~~~a~~lA~G 146 (389)
...+|--|=+.+||||+.+.+. -|+++++ |+++.|+.. |-|. ++. ..+++++ .+++.....++.++|
T Consensus 39 ~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Ln 118 (411)
T TIGR03447 39 MYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALR 118 (411)
T ss_pred EEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 4567777779999999988662 2444433 788876533 2221 111 2355444 446677888888888
Q ss_pred CC
Q 016437 147 ID 148 (389)
Q Consensus 147 lD 148 (389)
+.
T Consensus 119 i~ 120 (411)
T TIGR03447 119 VL 120 (411)
T ss_pred CC
Confidence 64
No 105
>PLN02943 aminoacyl-tRNA ligase
Probab=74.56 E-value=4.3 Score=46.73 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=47.6
Q ss_pred ccchhhHHHhhhh-hhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCc--cccCCCCccccc
Q 016437 200 ALLTYPVLMASDI-LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMS 276 (389)
Q Consensus 200 gll~YPvLQAADI-Ll~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~--~ii~~~~~~lpg 276 (389)
..+.||-....|. .+|-+|+...|.||. .+=++|-++.-.. ..| ..|. .+++ ..+..
T Consensus 519 s~lgwp~~~~~~~~~~yP~dl~~~G~Dii-~fW~a~m~~~~~~-~~~---------------~~Pf~~v~~h---g~v~~ 578 (958)
T PLN02943 519 STLGWPDVSAEDFKKFYPTTVLETGHDIL-FFWVARMVMMGIE-FTG---------------TVPFSYVYLH---GLIRD 578 (958)
T ss_pred HhcCCCccChHHHhccCCCeEEEEeehHH-HHHHHHHHHhhhh-hcC---------------CCChheEEEe---ccEEC
Confidence 3344654322232 235689999999998 4666776663221 112 2342 2333 33444
Q ss_pred CCCCCCcCCCCCCCCCCcccCCC-----CHHHHHHHhh
Q 016437 277 LTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIK 309 (389)
Q Consensus 277 L~dg~~KMSKS~~~~~s~I~L~D-----spe~I~kKI~ 309 (389)
. +| +|||||. ||.|...| .+|.++-=+.
T Consensus 579 ~-~G-~KMSKS~---GN~i~p~~~i~~ygaDalR~~l~ 611 (958)
T PLN02943 579 S-QG-RKMSKTL---GNVIDPLDTIKEFGTDALRFTLA 611 (958)
T ss_pred C-CC-CcccCcC---CCCCCHHHHHHhcCChHHHHHHH
Confidence 3 66 7999997 78886544 4555554444
No 106
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=72.97 E-value=2.8 Score=47.48 Aligned_cols=61 Identities=33% Similarity=0.434 Sum_probs=36.6
Q ss_pred hcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCC-c-cccCCCCcccccCCCCCCcCCCCCCCC
Q 016437 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSAPSD 291 (389)
Q Consensus 214 l~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P-~-~ii~~~~~~lpgL~dg~~KMSKS~~~~ 291 (389)
.|-+|+...|.||.... ++|-++.... .+| ..| . .+++ ..+... +| +|||||.
T Consensus 476 ~~P~d~~~~G~Dii~fw-~~~~~~~~~~-~~~---------------~~Pfk~v~~h---G~v~d~-~G-~KMSKS~--- 530 (861)
T TIGR00422 476 FYPTDLLVTGYDIIFFW-VARMIFRSLA-LTG---------------QVPFKEVYIH---GLVRDE-QG-RKMSKSL--- 530 (861)
T ss_pred cCCcceeecchhhhhHH-HHHHHHHHHH-hcC---------------CCchheEEEe---eEEECC-CC-CCCCcCC---
Confidence 35689999999997653 4455553221 112 224 2 3333 345554 56 7999998
Q ss_pred CCcccCCC
Q 016437 292 QSRINLLD 299 (389)
Q Consensus 292 ~s~I~L~D 299 (389)
+|.|.+.|
T Consensus 531 GN~i~p~~ 538 (861)
T TIGR00422 531 GNVIDPLD 538 (861)
T ss_pred CCCCCHHH
Confidence 78886543
No 107
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=72.50 E-value=3.9 Score=47.20 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=37.7
Q ss_pred hcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCc--cccCCCCcccccCCCCCCcCCCCCCCC
Q 016437 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSD 291 (389)
Q Consensus 214 l~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~--~ii~~~~~~lpgL~dg~~KMSKS~~~~ 291 (389)
.|-+|+...|.||.. +=++|-++..... .| ..|. .+++ ..|.+- +| +|||||.
T Consensus 536 ~~P~d~~~~G~Dii~-~W~arm~~~~~~~-~~---------------~~Pfk~v~~H---G~v~d~-~G-~KMSKSl--- 590 (995)
T PTZ00419 536 FFPTSLLETGSDILF-FWVARMVMMSLHL-TD---------------KLPFKTVFLH---AMVRDS-QG-EKMSKSK--- 590 (995)
T ss_pred cCCCcEEEechhHHh-HHHHHHHHHHHHh-cC---------------CCChHHHhcc---ceEECC-CC-CCcccCC---
Confidence 456899999999876 5566666655431 11 2352 3333 456553 67 7999997
Q ss_pred CCcccC
Q 016437 292 QSRINL 297 (389)
Q Consensus 292 ~s~I~L 297 (389)
||.|..
T Consensus 591 GNvIdP 596 (995)
T PTZ00419 591 GNVIDP 596 (995)
T ss_pred CCcCCh
Confidence 788843
No 108
>PLN02959 aminoacyl-tRNA ligase
Probab=72.32 E-value=6 Score=46.23 Aligned_cols=61 Identities=26% Similarity=0.262 Sum_probs=35.2
Q ss_pred hcCCcEEeecCcchHHHHHHHHHHHHhhhh--hcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCC
Q 016437 214 LYQSDFVPVGEDQKQHLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (389)
Q Consensus 214 l~~adiVpvG~DQ~qhleLtRdiA~rfN~~--yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~ 291 (389)
.|=+|+..-|.||....- +.-+ |++. +|. -+-|..++.. ..|. + +| +|||||.
T Consensus 669 ~yP~Dl~~sG~Dii~~wl-~~~l---~~~~al~~~-------------~P~p~~v~v~--G~V~-~-~G-~KMSKSk--- 723 (1084)
T PLN02959 669 WYPFDLRVSGKDLIQNHL-TFAI---YNHTAIWAE-------------EHWPRGFRCN--GHLM-L-NS-EKMSKST--- 723 (1084)
T ss_pred hCCCeEEEecccHHHHHH-HHHH---HHHHHhcCC-------------CCCCceEEEc--cEEe-c-CC-cCccccC---
Confidence 456899999999976543 3333 3332 221 1224333221 2343 3 67 7999997
Q ss_pred CCcccCCC
Q 016437 292 QSRINLLD 299 (389)
Q Consensus 292 ~s~I~L~D 299 (389)
||.|.+.|
T Consensus 724 GNvI~p~d 731 (1084)
T PLN02959 724 GNFLTLRQ 731 (1084)
T ss_pred CCcCCHHH
Confidence 78886543
No 109
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=72.25 E-value=5 Score=42.95 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=32.4
Q ss_pred cEEeecCcchHHHH-HHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCccc
Q 016437 218 DFVPVGEDQKQHLE-LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (389)
Q Consensus 218 diVpvG~DQ~qhle-LtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~ 296 (389)
++...|.|+..... +---+..-.+. .++.|..++.. ..+. + +| +|||||. +|.|.
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~~----------------~~~~P~~v~~~--G~v~-~-~G-~KMSKS~---GN~I~ 344 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSGE----------------PLKLPDEIVSS--EYLT-L-EG-GKFSKSR---GWGIW 344 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcCC----------------CCCCCCEeecc--CCEE-E-CC-eeeccCC---CcccC
Confidence 47888999976333 22222222111 14456655542 3443 3 66 7999997 78886
Q ss_pred CC
Q 016437 297 LL 298 (389)
Q Consensus 297 L~ 298 (389)
+.
T Consensus 345 p~ 346 (556)
T PRK12268 345 VD 346 (556)
T ss_pred HH
Confidence 44
No 110
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=72.07 E-value=2.4 Score=42.18 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=32.7
Q ss_pred CCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcc
Q 016437 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (389)
Q Consensus 216 ~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I 295 (389)
..++..+|.|+..++-+.- .|--.. .| .+.|..++.. ..+ .+ +| +|||||. +|.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~-pa~l~~--~~--------------~~~~~~~~~~--~~~-~~-~g-~kmSkS~---gn~i 289 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYW-PAMLLG--AG--------------LPLPTRIVAH--GYL-TV-EG-KKMSKSR---GNVV 289 (319)
T ss_pred CceEEEEeechhhhhHHHH-HHHHHh--CC--------------CCCCcEeeee--eeE-EE-CC-eeecccC---Cccc
Confidence 3578899999998653311 111111 11 2335444432 223 33 56 6999997 7888
Q ss_pred cCC
Q 016437 296 NLL 298 (389)
Q Consensus 296 ~L~ 298 (389)
.+.
T Consensus 290 ~~~ 292 (319)
T cd00814 290 DPD 292 (319)
T ss_pred CHH
Confidence 653
No 111
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=71.43 E-value=2.4 Score=46.48 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=38.9
Q ss_pred CCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcc
Q 016437 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (389)
Q Consensus 216 ~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I 295 (389)
.+|+...|.||..++-+- =..+-.-.| ++.|..++.. ..+. + +| +|||||. +|.|
T Consensus 254 p~~~~~~GkDii~fH~i~---wpa~l~~~~--------------~~~p~~v~~h--g~l~-~-eg-~KMSKS~---GN~i 308 (648)
T PRK12267 254 PADVHLVGKDILRFHAIY---WPIMLMALG--------------LPLPKKVFAH--GWWL-M-KD-GKMSKSK---GNVV 308 (648)
T ss_pred ccceEEEeeeecchhHHH---HHHHHHhCC--------------CCCCcEEEec--ceEE-E-CC-ceecccC---Cccc
Confidence 468889999998744321 011111112 4557665542 2332 2 56 7999997 7888
Q ss_pred cCCC-----CHHHHHHHhhh
Q 016437 296 NLLD-----PKDVIANKIKR 310 (389)
Q Consensus 296 ~L~D-----spe~I~kKI~k 310 (389)
...| ++|.++==+.+
T Consensus 309 ~p~d~l~~ygaD~lR~~L~~ 328 (648)
T PRK12267 309 DPEELVDRYGLDALRYYLLR 328 (648)
T ss_pred CHHHHHHHcCCcHHHHHHHh
Confidence 6544 44555544443
No 112
>PLN02882 aminoacyl-tRNA ligase
Probab=71.43 E-value=7 Score=46.01 Aligned_cols=75 Identities=27% Similarity=0.383 Sum_probs=41.3
Q ss_pred ccccchhhHHHhhhhh--hcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccc
Q 016437 198 GVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM 275 (389)
Q Consensus 198 ~~gll~YPvLQAADIL--l~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lp 275 (389)
+++.+-||- ..-+.+ .+=+|+..-|.||..-. +.+-++...- .+|. +.|..++.. ..+.
T Consensus 548 p~a~~~~p~-e~~~~f~~~~PaD~i~eG~Dq~RgW-f~~ll~~s~~-l~~~--------------~pfk~Vivh--G~vl 608 (1159)
T PLN02882 548 PYAYIHYPF-ENKELFEKNFPADFVAEGLDQTRGW-FYTLMVLSTA-LFDK--------------PAFKNLICN--GLVL 608 (1159)
T ss_pred HHHHcCCcc-cChhHhhccCCceEEEEecchhhhH-HHHHHHHHHH-hcCC--------------CCcceeEEc--cEEE
Confidence 455555662 112211 24599999999998854 4444444322 2332 223333332 3343
Q ss_pred cCCCCCCcCCCCCCCCCCccc
Q 016437 276 SLTDGLSKMSKSAPSDQSRIN 296 (389)
Q Consensus 276 gL~dg~~KMSKS~~~~~s~I~ 296 (389)
. .+| +|||||. +|.|.
T Consensus 609 d-e~G-~KMSKSl---GNvId 624 (1159)
T PLN02882 609 A-EDG-KKMSKSL---KNYPD 624 (1159)
T ss_pred C-CCC-CCcccCC---CCCCC
Confidence 3 256 7999997 68874
No 113
>PLN02843 isoleucyl-tRNA synthetase
Probab=71.42 E-value=3.1 Score=48.02 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.7
Q ss_pred hhcCCcEEeecCcchH
Q 016437 213 LLYQSDFVPVGEDQKQ 228 (389)
Q Consensus 213 Ll~~adiVpvG~DQ~q 228 (389)
+.|-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 4567999999999986
No 114
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=70.75 E-value=2.7 Score=46.37 Aligned_cols=93 Identities=22% Similarity=0.230 Sum_probs=54.1
Q ss_pred hHHHhhhhhhcCCcEEeecCcc-hHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 016437 205 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (389)
Q Consensus 205 PvLQAADILl~~adiVpvG~DQ-~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~K 283 (389)
...|+.|||-...|+--+|.|- -+|+| .+||..-- .||... + +..++.. ..| .+ +| .|
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHe--NEiAQseA-~~~~~~-----------~--v~y~~H~--G~L-~i-~G-~K 315 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHD--NELAQSEA-YFDKHQ-----------W--VNYFLHS--GHL-HI-KG-LK 315 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcch--hHHHHHHH-hhCCCC-----------C--CcEEEEE--EEE-Ee-cc-ch
Confidence 3589999999999999999998 46755 33443321 123211 1 1122221 222 33 56 69
Q ss_pred CCCCCCCCCCcccCCC-----CHHHHHHHhhhcccCCCCCcCcCC
Q 016437 284 MSKSAPSDQSRINLLD-----PKDVIANKIKRCKTDSSAGLEFDN 323 (389)
Q Consensus 284 MSKS~~~~~s~I~L~D-----spe~I~kKI~kA~TD~~~~~~~~~ 323 (389)
||||. +|.|.+.| +++.++==+... .....+.|++
T Consensus 316 MSKSL---GNfItp~dlLekygaDaLR~~lLs~--~~~~dldFS~ 355 (651)
T PTZ00399 316 MSKSL---KNFITIRQALSKYTARQIRLLFLLH--KWDKPMNYSD 355 (651)
T ss_pred hhhcC---CCcccHHHHHHHcChHHHHHHHHhc--CCCCCCccCH
Confidence 99997 78887654 556665544432 3334445543
No 115
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=69.99 E-value=4 Score=45.87 Aligned_cols=61 Identities=26% Similarity=0.360 Sum_probs=33.6
Q ss_pred cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (389)
Q Consensus 215 ~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P-~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s 293 (389)
|-+|+...|.||... -+.+-++...- .+|. .| ..++. + ..+... +| +|||||. +|
T Consensus 485 ~P~d~~~~G~Di~~~-w~~~~l~~~~~-~~~~---------------~Pf~~v~~-h-g~v~~~-~G-~KMSKS~---GN 540 (800)
T PRK13208 485 FPMDLRPQGHDIIRT-WLFYTILRAYL-LTGK---------------LPWKNIMI-S-GMVLDP-DG-KKMSKSK---GN 540 (800)
T ss_pred CCceEEEeecchhhh-HHHHHHHHHHH-hcCC---------------CCcceEEE-e-eEEECC-CC-CCCCCCC---CC
Confidence 357899999999852 23333333221 1221 13 22222 1 344443 66 7999997 78
Q ss_pred cccCCC
Q 016437 294 RINLLD 299 (389)
Q Consensus 294 ~I~L~D 299 (389)
.|.+.|
T Consensus 541 ~i~p~~ 546 (800)
T PRK13208 541 VVTPEE 546 (800)
T ss_pred CCCHHH
Confidence 886543
No 116
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=69.19 E-value=6.7 Score=45.35 Aligned_cols=45 Identities=31% Similarity=0.283 Sum_probs=29.8
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHHc--cCcEEE-EEeecccc
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAI 122 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i-~IaDlhAl 122 (389)
++.|.+|. -|||.+|+||.++...+ +.+.+. |+++.+ .=-|-|.+
T Consensus 61 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 111 (995)
T PTZ00419 61 KFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111 (995)
T ss_pred eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence 35566665 57899999999876532 334443 788765 45577766
No 117
>PLN02843 isoleucyl-tRNA synthetase
Probab=69.15 E-value=8.1 Score=44.65 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=44.3
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHH--ccCcEEE-EEeecccccC--------------CCCHHHHHHHHHH
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQ--NSYETLF-FIVDLHAITL--------------PYDTQQLSKATRE 137 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i-~IaDlhAlt~--------------~~d~~~i~~~~~~ 137 (389)
++.+..|. -++|.+||||.++.+.+ .++.+ .|+++.+ .=-|-|.+-. ..+++++++.+++
T Consensus 33 ~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~ 112 (974)
T PLN02843 33 SFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAK 112 (974)
T ss_pred CEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHH
Confidence 35555555 56899999999886632 33333 3677755 4446664421 1245555554443
Q ss_pred H--------HHHHHHcCC--CCCC
Q 016437 138 T--------AAIYLACGI--DNSK 151 (389)
Q Consensus 138 ~--------~a~~lA~Gl--Dp~k 151 (389)
. ..++..+|+ |.++
T Consensus 113 ~~~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 113 FAKKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHHHhCCceecCC
Confidence 3 456788898 7775
No 118
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.04 E-value=2.6 Score=44.72 Aligned_cols=82 Identities=26% Similarity=0.186 Sum_probs=51.0
Q ss_pred hHHHhhhhhhcCCcEEeecCc-chHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 016437 205 PVLMASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (389)
Q Consensus 205 PvLQAADILl~~adiVpvG~D-Q~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~K 283 (389)
...|+.++|--.-||--+|.| +-||+|- |||..-- .+|.+. |. --=++. .+|+ . +| .|
T Consensus 210 CSaM~~~~LG~~~DIHgGG~DLiFPHHEN--EiAQsea-~~g~~~-----------~a-~yWmH~---G~l~-i-~g-eK 268 (464)
T COG0215 210 CSAMSTKYLGETFDIHGGGSDLIFPHHEN--EIAQSEA-ATGVKP-----------FA-KYWMHN---GFLN-I-DG-EK 268 (464)
T ss_pred HHHHHHHHhCCCcceecCcccccCCCccc--HHHHHHh-hhCCCc-----------ce-eEeEEc---ceee-e-cC-cC
Confidence 367899999989999999999 5689884 4554422 123111 10 001333 3332 2 66 79
Q ss_pred CCCCCCCCCCcccCCC-----CHHHHHHHhhh
Q 016437 284 MSKSAPSDQSRINLLD-----PKDVIANKIKR 310 (389)
Q Consensus 284 MSKS~~~~~s~I~L~D-----spe~I~kKI~k 310 (389)
||||. +|.|.+.| +|++++-=+-.
T Consensus 269 MSKSL---GNfiti~d~l~~~~p~~lR~~lls 297 (464)
T COG0215 269 MSKSL---GNFITVRDLLKKYDPEVLRLFLLS 297 (464)
T ss_pred ccccc---CCeeEHHHHHhhcCHHHHHHHHHH
Confidence 99998 78888766 67666644433
No 119
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=68.79 E-value=7.5 Score=44.88 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.5
Q ss_pred hcCCcEEeecCcchH
Q 016437 214 LYQSDFVPVGEDQKQ 228 (389)
Q Consensus 214 l~~adiVpvG~DQ~q 228 (389)
.|-+|+..-|.||..
T Consensus 543 ~~Pad~~~~G~Di~r 557 (975)
T PRK06039 543 HFPADFIVEGIDQTR 557 (975)
T ss_pred cCCceEEEechhhHh
Confidence 456899999999965
No 120
>PLN02286 arginine-tRNA ligase
Probab=68.61 E-value=5.5 Score=43.31 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=41.0
Q ss_pred EEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC
Q 016437 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (389)
Q Consensus 219 iVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~ 298 (389)
+-.+|.||..|+.--..+++.++.... .. -..-+.+.. .+|-++ +| +||||-. |+.|.|.
T Consensus 331 IyVvg~~q~~hf~~v~~~l~~lG~~~~-~~-----------~~~l~h~~~---g~V~~~-~g-~kmStR~---G~~v~L~ 390 (576)
T PLN02286 331 IYVTDVGQQQHFDMVFKAAKRAGWLPE-DT-----------YPRLEHVGF---GLVLGE-DG-KRFRTRS---GEVVRLV 390 (576)
T ss_pred EEEEeCcHHHHHHHHHHHHHHcCCCcc-cc-----------CCceEEEee---ccEECC-CC-CcccCCC---CCeeEHH
Confidence 347999999999999999999883200 00 000122222 356444 66 6999886 7899987
Q ss_pred CCHH
Q 016437 299 DPKD 302 (389)
Q Consensus 299 Dspe 302 (389)
|=-+
T Consensus 391 dlld 394 (576)
T PLN02286 391 DLLD 394 (576)
T ss_pred HHHH
Confidence 6333
No 121
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.71 E-value=9.6 Score=42.35 Aligned_cols=79 Identities=23% Similarity=0.277 Sum_probs=48.7
Q ss_pred CCCCCCCceEEEee-cCCCcchhhhHHHH-H-HHHHHHHc--cCcEEEEEeecccccCCC---------C-HHHHHHHHH
Q 016437 72 ASSSSVKKRIVSGV-QPTGSIHLGNYLGA-I-KNWIALQN--SYETLFFIVDLHAITLPY---------D-TQQLSKATR 136 (389)
Q Consensus 72 ~~~~~~~~~i~sGi-qPTG~lHLGnylga-i-~~~v~lQ~--~~~~~i~IaDlhAlt~~~---------d-~~~i~~~~~ 136 (389)
+.....+++|++=| -|||.+|+||...- | --..++|+ ||+++=-+ .|.|+=-|. + ..-..+|+.
T Consensus 52 ~~d~sk~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPM-GWDaFGLPAENAAiergv~P~sWT~~NI~ 130 (876)
T KOG0435|consen 52 DSDKSKKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPM-GWDAFGLPAENAAIERGVHPASWTINNIA 130 (876)
T ss_pred ccccCCCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCC-cccccCCchhhHHHhcCCCchhhhHHHHH
Confidence 44455567999998 79999999997421 1 12333433 77775443 355543221 2 234567778
Q ss_pred HHHHHHHHcCC--CCCC
Q 016437 137 ETAAIYLACGI--DNSK 151 (389)
Q Consensus 137 ~~~a~~lA~Gl--Dp~k 151 (389)
.|..++...|+ |.++
T Consensus 131 ~Mk~Ql~~lg~~FDWdr 147 (876)
T KOG0435|consen 131 KMKQQLKSLGISFDWDR 147 (876)
T ss_pred HHHHHHHHcCccccccc
Confidence 88888888875 5554
No 122
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.69 E-value=5.9 Score=43.20 Aligned_cols=69 Identities=25% Similarity=0.277 Sum_probs=46.1
Q ss_pred CCcE--EeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCcCCCCCCCCC
Q 016437 216 QSDF--VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (389)
Q Consensus 216 ~adi--VpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P-~~ii~~~~~~lpgL~dg~~KMSKS~~~~~ 292 (389)
++|. --+|.||.+|+...+-+++..+.. .+ +.++... -.++...+| .||||-. +
T Consensus 333 ~~d~~IyV~gadq~~~~~ql~~~l~~~g~~------------------~~~~~~~h~~-~~l~~~~~g-~kmStR~---G 389 (577)
T COG0018 333 GFDKLIYVLGADQHGHFKQLKAVLELLGYG------------------PDKEVLLHQG-VGLVRGGEG-VKMSTRA---G 389 (577)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCC------------------CccceEEEEE-EeeeECCCC-ccccccC---C
Confidence 4555 479999999999999999998732 22 2222211 223333244 6899997 7
Q ss_pred CcccCCCCHHHHHHH
Q 016437 293 SRINLLDPKDVIANK 307 (389)
Q Consensus 293 s~I~L~Dspe~I~kK 307 (389)
+.|.|.|=-+++.+|
T Consensus 390 ~~vtl~dllde~~er 404 (577)
T COG0018 390 NVVTLDDLLDEAGER 404 (577)
T ss_pred ceEEHHHHHHHHHHH
Confidence 899998866666633
No 123
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=63.30 E-value=5.6 Score=42.29 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=32.0
Q ss_pred EEeecCcchHHHHHH-HHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccC
Q 016437 219 FVPVGEDQKQHLELT-RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (389)
Q Consensus 219 iVpvG~DQ~qhleLt-RdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L 297 (389)
+.+.|.|....+-+- --+..-.+ ++.|..++.. ..+. + +| +|||||. +|.|.+
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~------------------~~~~~~~~~~--g~v~-~-~g-~KmSKS~---Gn~i~~ 338 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLG------------------LPLPTQVFSH--GYLT-V-EG-GKMSKSL---GNVVDP 338 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCC------------------CCCCCEEEee--ccEE-E-CC-ceecccC---CceecH
Confidence 889999998854332 11221111 3346655542 3343 2 55 7999997 788865
Q ss_pred CC
Q 016437 298 LD 299 (389)
Q Consensus 298 ~D 299 (389)
.|
T Consensus 339 ~d 340 (530)
T TIGR00398 339 SD 340 (530)
T ss_pred HH
Confidence 43
No 124
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=63.25 E-value=15 Score=41.50 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=42.0
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHH--ccCcEEEE-EeecccccC--------CCCH-------------HH
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQ--NSYETLFF-IVDLHAITL--------PYDT-------------QQ 130 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i~-IaDlhAlt~--------~~d~-------------~~ 130 (389)
+..+.+|. -|+|.+||||.++.+.. +.+.+ .|+++.+. =-|-|.+-. ..++ +-
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 34555533 67899999999886632 33333 37887664 445555421 1111 12
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 016437 131 LSKATRETAAIYLACGID 148 (389)
Q Consensus 131 i~~~~~~~~a~~lA~GlD 148 (389)
..++...+..++.++|+.
T Consensus 119 ~~~~~~~~~~~~~~lg~s 136 (800)
T PRK13208 119 TDEDEKKFRELWRRLGLS 136 (800)
T ss_pred HHHHHHHHHHHHHHhCee
Confidence 334556777888888973
No 125
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=59.21 E-value=52 Score=34.56 Aligned_cols=69 Identities=28% Similarity=0.300 Sum_probs=41.1
Q ss_pred hHHHhhhhhhcCCcEEeecCcch-HHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 016437 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (389)
Q Consensus 205 PvLQAADILl~~adiVpvG~DQ~-qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~K 283 (389)
..-|+..+|--.-|+.-+|.|-. +|+|--.-...-. +|+. +-+...+.. . .... +| +|
T Consensus 230 Csam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~---~g~~-------------~~~~~w~H~--g-~l~~-~G-~K 288 (411)
T TIGR03447 230 CSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAA---TGVR-------------RMARHYVHA--G-MIGL-DG-EK 288 (411)
T ss_pred HHHHHHHHcCCceecccCcccccccchHhHHHHHHHh---cCCC-------------CcceEEEEC--C-EECc-CC-CC
Confidence 45677777777788999999964 6776544333332 2321 113333332 2 2343 66 79
Q ss_pred CCCCCCCCCCcccC
Q 016437 284 MSKSAPSDQSRINL 297 (389)
Q Consensus 284 MSKS~~~~~s~I~L 297 (389)
||||. +|.|.+
T Consensus 289 MSKSl---GN~i~~ 299 (411)
T TIGR03447 289 MSKSL---GNLVFV 299 (411)
T ss_pred ccCcC---CCCCCH
Confidence 99997 688865
No 126
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=58.84 E-value=14 Score=42.06 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=20.3
Q ss_pred cCCcEEeecCcc-hHHHHHHHHHHHH
Q 016437 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (389)
Q Consensus 215 ~~adiVpvG~DQ-~qhleLtRdiA~r 239 (389)
|-+|+...|.|| .-|+-.+|-+...
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~ 544 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKF 544 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHH
Confidence 469999999999 7888888886533
No 127
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=58.17 E-value=6.9 Score=41.88 Aligned_cols=69 Identities=23% Similarity=0.103 Sum_probs=40.1
Q ss_pred hHHHhhhhhhcCCcEEeecCcch-HHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 016437 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (389)
Q Consensus 205 PvLQAADILl~~adiVpvG~DQ~-qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~K 283 (389)
..-|+...|--.-|+.-+|.|-. +|+|--.-.++..+ |.. .+...+.. ..+ .+ +| +|
T Consensus 222 CsaMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~~---g~~--------------~~~~w~h~--g~l-~~-~g-~K 279 (490)
T PRK14536 222 CSAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAAT---GKP--------------WVRYWLHH--EFL-LM-NK-GK 279 (490)
T ss_pred HHHHHHHHcCCceeEEeccccCCCcchhhHHHHHHHhc---CCC--------------cceEEEEc--CEE-ee-cC-cc
Confidence 34556666655679999999964 67764433333322 321 13333332 222 33 56 69
Q ss_pred CCCCCCCCCCcccCC
Q 016437 284 MSKSAPSDQSRINLL 298 (389)
Q Consensus 284 MSKS~~~~~s~I~L~ 298 (389)
||||. +|.|.+.
T Consensus 280 MSKSl---GN~itl~ 291 (490)
T PRK14536 280 MSKSA---GQFLTLS 291 (490)
T ss_pred ccccC---CCcccHH
Confidence 99997 7888773
No 128
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=56.84 E-value=16 Score=41.39 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=20.0
Q ss_pred cCCcEEeecCcc-hHHHHHHHHHHHH
Q 016437 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (389)
Q Consensus 215 ~~adiVpvG~DQ-~qhleLtRdiA~r 239 (389)
|-+|+-..|.|| .-|+-.+|-....
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~ 547 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKV 547 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHH
Confidence 459999999999 6888888865533
No 129
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.56 E-value=11 Score=41.21 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=29.8
Q ss_pred EEeecCCCcchhhhHHHHHH--HHHHHHc--cCcE--EEEEeecccc
Q 016437 82 VSGVQPTGSIHLGNYLGAIK--NWIALQN--SYET--LFFIVDLHAI 122 (389)
Q Consensus 82 ~sGiqPTG~lHLGnylgai~--~~v~lQ~--~~~~--~i~IaDlhAl 122 (389)
||.=-|||+||+||..+++. -..++-+ ||++ -+.|.||=..
T Consensus 123 ~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q 169 (577)
T COG0018 123 YSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQ 169 (577)
T ss_pred EeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHH
Confidence 78889999999999988772 2333322 6776 5788998543
No 130
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=55.64 E-value=12 Score=40.57 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=39.3
Q ss_pred EEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC
Q 016437 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (389)
Q Consensus 219 iVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~ 298 (389)
+-.+|.||..|+.--..+++.++..-. -...+... .+| .+ +| +||||-. |+.|.|.
T Consensus 328 IyV~g~dq~~h~~~l~~~~~~lg~~~~-----------------~~l~h~~~-g~V-~~-~g-~kmStR~---G~~v~l~ 383 (562)
T PRK12451 328 LYVVGPEQSLHFNQFFTVLKKLGYTWV-----------------DGMEHVPF-GLI-LK-DG-KKMSTRK---GRVVLLE 383 (562)
T ss_pred EEEeCCcHHHHHHHHHHHHHHcCCCcc-----------------cCeEEEee-eeE-ec-CC-CCCcCCC---CCeeEHH
Confidence 458999999999999999999983210 01112222 234 34 55 5999997 7889887
Q ss_pred CC
Q 016437 299 DP 300 (389)
Q Consensus 299 Ds 300 (389)
|=
T Consensus 384 dL 385 (562)
T PRK12451 384 EV 385 (562)
T ss_pred HH
Confidence 63
No 131
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=54.71 E-value=13 Score=37.76 Aligned_cols=75 Identities=27% Similarity=0.213 Sum_probs=43.1
Q ss_pred cCCcE--EeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCC
Q 016437 215 YQSDF--VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (389)
Q Consensus 215 ~~adi--VpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~ 292 (389)
+++|. -.+|.||..|+.-...+++.++..-. .....+... .++.+ .||..|||+.. +
T Consensus 236 ~~~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~----------------~~~~~H~~~-g~vl~-~~gk~~mstR~---G 294 (354)
T PF00750_consen 236 YGFDKIIYVVGADQKGHFKQLFAILEALGYDPE----------------AVKLQHVSF-GVVLL-KDGKVKMSTRK---G 294 (354)
T ss_dssp SS-SEEEEEEEGGGHHHHHHHHHHHHHTT-HHH----------------HCTEEEEEE--EEEE-TTBEESS-TTT---T
T ss_pred hccccEEEEecCchhhHHHHHHHHHHHhCCCCC----------------CCEEEEEEE-EEEEc-CCCCccccCCC---C
Confidence 34554 58999999999999999999984200 001111111 12222 36623899997 7
Q ss_pred CcccCCCCHHHHHHHhhh
Q 016437 293 SRINLLDPKDVIANKIKR 310 (389)
Q Consensus 293 s~I~L~Dspe~I~kKI~k 310 (389)
+.|.|.|=-++..++.+.
T Consensus 295 ~~i~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 295 NVITLDDLLDEAVERALE 312 (354)
T ss_dssp SSTBHHHHHHHHHHHHHH
T ss_pred CceEHHHHHHHHHHHHHH
Confidence 899886544444444433
No 132
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=54.59 E-value=7.8 Score=44.01 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=28.9
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHHc--cCcEEEE-Eeecccc
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAI 122 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i~-IaDlhAl 122 (389)
+..|++|. -+||.||+||.++...+ +.+++. |+++.+. =-|-|.+
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 84 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGI 84 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCC
Confidence 35666665 56899999999876532 333333 7787664 4466655
No 133
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=54.31 E-value=12 Score=40.41 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=28.4
Q ss_pred eEEEeecCCCcchhhhHHHHHH--HHHHHHc--cCcE--EEEEeec
Q 016437 80 RIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYET--LFFIVDL 119 (389)
Q Consensus 80 ~i~sGiqPTG~lHLGnylgai~--~~v~lQ~--~~~~--~i~IaDl 119 (389)
.-|++--|+|.+|+||..+++. -+.++.+ |+++ .+.|.||
T Consensus 116 ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~ 161 (566)
T TIGR00456 116 IEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDW 161 (566)
T ss_pred EEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecch
Confidence 3478889999999999988772 2334433 6665 4677886
No 134
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=53.82 E-value=39 Score=31.25 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=35.8
Q ss_pred ecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeeccc-cc--CCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCc
Q 016437 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (389)
Q Consensus 85 iqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhA-lt--~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v 160 (389)
||| +|+||.-- ++...+.-+ +++|.|+.-.. -+ ++.+.++-.+.++.. +...|+|.+++.|.-=.|.
T Consensus 8 F~P---~H~GHl~~-i~~a~~~~~--~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~---~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 8 FQP---FHNGHLAV-VLIALEKAK--KVIILIGSARTARNIKNPWTSEEREVMIEAA---LSDAGADLARVHFRPLRDH 77 (181)
T ss_pred cCC---CCHHHHHH-HHHHHHHCC--eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHH---HhccCCCcceEEEEecCCC
Confidence 465 89999753 334332222 56666755422 11 234555544444433 3345899888766543343
No 135
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.59 E-value=22 Score=39.05 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=55.2
Q ss_pred ceEEEee--cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 016437 79 KRIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASV 154 (389)
Q Consensus 79 ~~i~sGi--qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~-d~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (389)
-+|+|-| +|-|.+||||.-....++=-... +.-|+.---| |+|. +.++--..+.++ ...+|++|-| |
T Consensus 247 GkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDD----TNPEkEee~yf~sI~e~---V~WLG~~P~k--v 317 (764)
T KOG1148|consen 247 GKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDD----TNPEKEEEEYFESIKEM---VAWLGFEPYK--V 317 (764)
T ss_pred CeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCC----CCcchhhHHHHHHHHHH---HHHhCCCcee--e
Confidence 3678887 67799999997532233311111 2224444333 2322 222333333444 3445999986 4
Q ss_pred EEcCCch-hhhHHHHH-------HhccCcHHHHhchhhHHHH
Q 016437 155 FVQSHVR-AHVELMWL-------LSSATPIGWLNKMIQFKEK 188 (389)
Q Consensus 155 f~QS~v~-eh~eL~w~-------L~~~~~~~~L~R~~~~K~k 188 (389)
=..||+. +..+++.. +.|+.+..++.+...+++.
T Consensus 318 TysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~ 359 (764)
T KOG1148|consen 318 TYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNER 359 (764)
T ss_pred ecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCC
Confidence 4568863 34444443 3488998888855554443
No 136
>PLN02224 methionine-tRNA ligase
Probab=52.40 E-value=11 Score=41.31 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=40.3
Q ss_pred cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCc
Q 016437 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (389)
Q Consensus 215 ~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~ 294 (389)
+..++..+|.|-..++-+-= -|--+.. | ++.|..++.. ..+ .+ +| +|||||. +|.
T Consensus 320 w~~~v~~iGKDii~fH~i~w-pa~l~~~--g--------------~~~P~~i~~~--g~l-~~-eG-~KMSKS~---GN~ 374 (616)
T PLN02224 320 WPASLHLIGKDILRFHAVYW-PAMLMSA--G--------------LELPKMVFGH--GFL-TK-DG-MKMGKSL---GNT 374 (616)
T ss_pred CCcceEEEeecccccHHHHH-HHHHHHC--C--------------CCCCcEEEec--ccE-ec-CC-ccccccC---Ccc
Confidence 35688899999887533221 1111110 1 4567766553 233 33 77 7999997 788
Q ss_pred ccCCC-----CHHHHHHHhhh
Q 016437 295 INLLD-----PKDVIANKIKR 310 (389)
Q Consensus 295 I~L~D-----spe~I~kKI~k 310 (389)
|.+.| ++|.++=-+.+
T Consensus 375 i~p~e~l~~ygaD~~R~yLl~ 395 (616)
T PLN02224 375 LEPFELVQKFGPDAVRYFFLR 395 (616)
T ss_pred CCHHHHHHHcCcHHHHHHHHh
Confidence 86544 44444444443
No 137
>PLN02660 pantoate--beta-alanine ligase
Probab=51.39 E-value=57 Score=32.63 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=50.2
Q ss_pred cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCc
Q 016437 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (389)
Q Consensus 215 ~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~ 294 (389)
.++|....|+--.|-+.+.|.+++.+|. |.-++.- +.+-. .||. =||+-+
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~~--------------------~v~I~~~--ptvRe-~dGL-A~SSRN------ 194 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLDF--------------------DIEVVGS--PIVRE-ADGL-AMSSRN------ 194 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcCC--------------------CceEEee--CceEC-CCCC-eecccc------
Confidence 3899999999999999999999999982 2223321 33444 3774 677764
Q ss_pred ccCCCCHHHHHHHhhhcccCC
Q 016437 295 INLLDPKDVIANKIKRCKTDS 315 (389)
Q Consensus 295 I~L~Dspe~I~kKI~kA~TD~ 315 (389)
.+|+....+....|-++.+..
T Consensus 195 ~yLs~~eR~~A~~l~~~L~~~ 215 (284)
T PLN02660 195 VRLSAEEREKALSISRSLARA 215 (284)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 677777777777777765444
No 138
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=50.06 E-value=29 Score=41.23 Aligned_cols=74 Identities=26% Similarity=0.381 Sum_probs=39.8
Q ss_pred ccccchhhHHHhhhhh--hcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCC--ccccCCCCcc
Q 016437 198 GVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGAR 273 (389)
Q Consensus 198 ~~gll~YPvLQAADIL--l~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P--~~ii~~~~~~ 273 (389)
+++.+-||--...+-+ .|=+|+.+=|.||..-.-.+ -++... ..+|. .| ..+++ ..
T Consensus 653 p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s-~l~~s~-~l~~~---------------~PfK~VlvH---G~ 712 (1205)
T PTZ00427 653 PYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYT-LLVIST-LLFDK---------------APFKNLICN---GL 712 (1205)
T ss_pred hHHHhCCCcccchhhHhccCCceEEEEecchhccHHHH-HHHHHH-HhcCC---------------CCcceeEEc---cE
Confidence 4555667742112222 35699999999997643222 222221 12332 23 22333 34
Q ss_pred cccCCCCCCcCCCCCCCCCCccc
Q 016437 274 VMSLTDGLSKMSKSAPSDQSRIN 296 (389)
Q Consensus 274 lpgL~dg~~KMSKS~~~~~s~I~ 296 (389)
+..- +| +|||||. ||.|.
T Consensus 713 Vld~-dG-~KMSKSl---GNvID 730 (1205)
T PTZ00427 713 VLAS-DG-KKMSKRL---KNYPD 730 (1205)
T ss_pred EEcC-CC-CCcccCC---CCCCC
Confidence 5442 67 7999997 68874
No 139
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.66 E-value=11 Score=43.40 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=26.4
Q ss_pred cccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhh-------cccCCCCCcCcC
Q 016437 272 ARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR-------CKTDSSAGLEFD 322 (389)
Q Consensus 272 ~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~k-------A~TD~~~~~~~~ 322 (389)
.++..= +| +|||||. +|+| +|.+|.+|.=. +.||....+.+.
T Consensus 593 GfvlDe-~G-rKMSKSl---GN~v----~P~~V~~~yGADiLRLwv~ssd~~~dl~~s 641 (933)
T COG0060 593 GFVLDE-KG-RKMSKSL---GNVV----DPQDVIDKYGADILRLWVASSDYWEDLRFS 641 (933)
T ss_pred ccEECC-CC-CCccccC---CCcC----CHHHHHHhhCchheeeeeeecCchhccccC
Confidence 345443 56 7999997 7888 57777766422 555655444444
No 140
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=49.01 E-value=12 Score=41.44 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=20.0
Q ss_pred ccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC
Q 016437 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (389)
Q Consensus 260 f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~ 298 (389)
++.|..++.. ..+.. +| +|||||. +|.|.+.
T Consensus 311 ~~lP~~v~~h--g~v~~--~G-~KMSKS~---GNvV~p~ 341 (673)
T PRK00133 311 YRLPTNVFAH--GFLTV--EG-AKMSKSR---GTFIWAR 341 (673)
T ss_pred CCCCCEEeee--ccEEe--cC-CcccccC---CcccCHH
Confidence 4567665543 33432 66 6999997 7888643
No 141
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=48.26 E-value=11 Score=43.93 Aligned_cols=45 Identities=33% Similarity=0.401 Sum_probs=29.8
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHHc--cCcEEEE-Eeecccc
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAI 122 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i~-IaDlhAl 122 (389)
++.|+.|. -+||.+|+||.++...+ +++.+. |+++.+. =-|-|.+
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Gl 99 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGI 99 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccch
Confidence 46666666 57899999999876532 444443 7887664 4566655
No 142
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=48.26 E-value=93 Score=34.94 Aligned_cols=101 Identities=22% Similarity=0.205 Sum_probs=53.9
Q ss_pred hHHHhhhhhhcCCcEEeecCcch-HHHHHHHHHHHHhhhhhcCcc-ccccCCCCCccccC---Cc---cccCCCCccccc
Q 016437 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRK-WKKLGGRGGAIFKV---PE---PLIPPAGARVMS 276 (389)
Q Consensus 205 PvLQAADILl~~adiVpvG~DQ~-qhleLtRdiA~rfN~~yg~~~-~~~~~~~~~~~f~~---P~---~ii~~~~~~lpg 276 (389)
..-|+...|--.-|+.-+|.|-. +|+|= ++|...- .+|... ...+ .-.+.. |- -++. ..|.
T Consensus 435 CSAMs~~~LG~~~DIHgGG~DLiFPHHEN--EiAQseA-~~g~~~~~~~~----~~~~~~~~~~~aryWmHn---G~V~- 503 (699)
T PRK14535 435 CSAMSENLFGDTFDIHGGGADLQFPHHEN--EIAQSVG-ATGHTCGHHHA----QTHHGQSIASHVKYWLHN---GFIR- 503 (699)
T ss_pred HHHHHHHHcCCcceeECCccccCCCCCcc--HHHHHHH-hhCCCcccccc----cccccccccccccEEEEC---CeEe-
Confidence 45677777777789999999964 78875 5554421 123100 0000 000000 11 1333 3343
Q ss_pred CCCCCCcCCCCCCCCCCcccCCC-----CHHHHHHHhhhcccCCCCCcCcCC
Q 016437 277 LTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRCKTDSSAGLEFDN 323 (389)
Q Consensus 277 L~dg~~KMSKS~~~~~s~I~L~D-----spe~I~kKI~kA~TD~~~~~~~~~ 323 (389)
+ +| +|||||. +|.|.+.| +|+.++-=+.. +.....+.|.+
T Consensus 504 v-dG-eKMSKSL---GN~it~~dlLe~ygpdalRl~lLs--shYRspL~fS~ 548 (699)
T PRK14535 504 V-DG-EKMSKSL---GNFFTIREVLKQYDPEVVRFFILR--AHYRSPLNYSD 548 (699)
T ss_pred e-CC-CccCCCC---CCcCCHHHHHHhCCHHHHHHHHHc--CCCCCCCCcCH
Confidence 4 67 7999997 68886654 56666554443 34444455543
No 143
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=48.03 E-value=11 Score=42.99 Aligned_cols=44 Identities=32% Similarity=0.384 Sum_probs=27.6
Q ss_pred ceEEEee-cCCCcchhhhHHHHHHH--HHHHH--ccCcEEE-EEeecccc
Q 016437 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQ--NSYETLF-FIVDLHAI 122 (389)
Q Consensus 79 ~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i-~IaDlhAl 122 (389)
..|.+|. -+||.||+||.+....+ +++.+ .|+++.+ .=.|-|.+
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi 87 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGI 87 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccch
Confidence 4444444 46899999999876532 33333 2777755 45566765
No 144
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=47.91 E-value=66 Score=34.52 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=43.4
Q ss_pred CceEE-EeecCCCcchhhhHHHHHH-----HHHHHHccCcEEEE--Eeec-----------ccccC-----CCCHHH-HH
Q 016437 78 KKRIV-SGVQPTGSIHLGNYLGAIK-----NWIALQNSYETLFF--IVDL-----------HAITL-----PYDTQQ-LS 132 (389)
Q Consensus 78 ~~~i~-sGiqPTG~lHLGnylgai~-----~~v~lQ~~~~~~i~--IaDl-----------hAlt~-----~~d~~~-i~ 132 (389)
+.++| .|.-+=..+||||..+.+. .|.++ .|+++.+. |.|+ ..++. ..++.+ ..
T Consensus 21 ~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~-~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 21 DVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRL-LKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred ceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHH-cCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 34444 3544446799999988652 34332 37888763 6666 22221 124433 44
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 016437 133 KATRETAAIYLACGIDNS 150 (389)
Q Consensus 133 ~~~~~~~a~~lA~GlDp~ 150 (389)
+++..+..++.++|+.+.
T Consensus 100 ~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 566778889999998765
No 145
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=47.64 E-value=9.2 Score=38.89 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=25.9
Q ss_pred EEeecCCCcchhhhHHHHHH--HHHHHHc--cCcE--EEEEeecccc
Q 016437 82 VSGVQPTGSIHLGNYLGAIK--NWIALQN--SYET--LFFIVDLHAI 122 (389)
Q Consensus 82 ~sGiqPTG~lHLGnylgai~--~~v~lQ~--~~~~--~i~IaDlhAl 122 (389)
|+.-=|||++|+||...++. -..++-+ |+++ .+.|.||=..
T Consensus 26 ~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q 72 (354)
T PF00750_consen 26 FSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQ 72 (354)
T ss_dssp E---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHH
T ss_pred ecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHH
Confidence 78888999999999988762 2333433 6665 5688998543
No 146
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.49 E-value=12 Score=42.70 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=23.6
Q ss_pred CCCcchhhhHHHHH--HHHHHHHc--cCcEEEEEeecccc
Q 016437 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAI 122 (389)
Q Consensus 87 PTG~lHLGnylgai--~~~v~lQ~--~~~~~i~IaDlhAl 122 (389)
+||.||+||.+..- --.++++. |+++++.-+=.||=
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAG 83 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAG 83 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCC
Confidence 39999999986532 12333333 78988877766663
No 147
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=46.71 E-value=17 Score=39.33 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=29.0
Q ss_pred EEeecCCCcchhhhHHHHHH--HHHHHHc--cCcE--EEEEeeccc
Q 016437 82 VSGVQPTGSIHLGNYLGAIK--NWIALQN--SYET--LFFIVDLHA 121 (389)
Q Consensus 82 ~sGiqPTG~lHLGnylgai~--~~v~lQ~--~~~~--~i~IaDlhA 121 (389)
|+.-=|||++|+||..+++. -..++-+ |+++ .+.|.||=.
T Consensus 119 ~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~ 164 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGT 164 (562)
T ss_pred ecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchH
Confidence 78889999999999988762 3334433 6775 567888843
No 148
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=46.00 E-value=24 Score=38.53 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=26.7
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHHc--cCcEEE-EEeeccccc
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAIT 123 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i-~IaDlhAlt 123 (389)
++.+..|- -+||.||+||.+..+.+ .++.+. |+++.+ +=-|-|.+-
T Consensus 24 ~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glp 75 (601)
T PF00133_consen 24 KFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLP 75 (601)
T ss_dssp EEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHH
T ss_pred cEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcc
Confidence 35566665 56899999999886632 333333 778755 556777764
No 149
>PLN02286 arginine-tRNA ligase
Probab=44.86 E-value=16 Score=39.84 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=28.7
Q ss_pred EEeecCCCcchhhhHHHHHH--HHHHHHc--cCcE--EEEEeeccc
Q 016437 82 VSGVQPTGSIHLGNYLGAIK--NWIALQN--SYET--LFFIVDLHA 121 (389)
Q Consensus 82 ~sGiqPTG~lHLGnylgai~--~~v~lQ~--~~~~--~i~IaDlhA 121 (389)
|+.-=|||++|+||..+++. -..++-+ |++| .+.|.||=.
T Consensus 123 fsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~ 168 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGT 168 (576)
T ss_pred ecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHH
Confidence 88889999999999987762 2333333 6775 567888843
No 150
>PLN02381 valyl-tRNA synthetase
Probab=44.62 E-value=15 Score=43.05 Aligned_cols=45 Identities=31% Similarity=0.394 Sum_probs=29.2
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHHc--cCcEEEEE-eecccc
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i~I-aDlhAl 122 (389)
++.|.+|. -+||.||+||.+..... +.+.+. |+++++.. -|-|.+
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Gl 179 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGI 179 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcC
Confidence 35666666 57899999999876532 333333 78876644 455655
No 151
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=42.22 E-value=16 Score=42.13 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=29.2
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHH--ccCcEEEEE-eecccc
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQ--NSYETLFFI-VDLHAI 122 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i~I-aDlhAl 122 (389)
++.+..|. -++|.+|+||.+..+.+ .++.+ .|+++.+.. =|-|.+
T Consensus 55 ~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGl 105 (961)
T PRK13804 55 KFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGL 105 (961)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCc
Confidence 35666666 56899999999876633 33444 377775543 366665
No 152
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=41.00 E-value=17 Score=41.78 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=44.8
Q ss_pred ceEEEee-cCCCcchhhhHHHHHHH--HHHHHc--cCcEEE-EEeecccccC-------------CCCHHHHHHHH----
Q 016437 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL-------------PYDTQQLSKAT---- 135 (389)
Q Consensus 79 ~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i-~IaDlhAlt~-------------~~d~~~i~~~~---- 135 (389)
+.+..|. -++|.+|+||.+..+.+ +++.+. |+++.+ +=-|-|.+-. ..+++++++.+
T Consensus 51 f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~ 130 (912)
T PRK05743 51 FILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYA 130 (912)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHH
Confidence 5555565 46899999999876632 445543 777755 4456665532 11345444333
Q ss_pred ----HHHHHHHHHcCC--CCCC
Q 016437 136 ----RETAAIYLACGI--DNSK 151 (389)
Q Consensus 136 ----~~~~a~~lA~Gl--Dp~k 151 (389)
..+..++..+|+ |.++
T Consensus 131 ~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 131 LEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHHHHHHHhCCcccCCC
Confidence 345567888898 7775
No 153
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=40.50 E-value=16 Score=39.08 Aligned_cols=66 Identities=21% Similarity=0.102 Sum_probs=38.2
Q ss_pred HhhhhhhcCCcEEeecCcch-HHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCC
Q 016437 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (389)
Q Consensus 208 QAADILl~~adiVpvG~DQ~-qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSK 286 (389)
|+...|--.-|+.-+|.|-. +|+|--+-.+...+ |. +.+...+.. ..+ -+ +| +||||
T Consensus 225 m~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~---g~--------------~~~~~W~H~--g~l-~~-~g-~KMSK 282 (481)
T PRK14534 225 MNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYL---NK--------------KWCDMFVHG--EFL-IM-EY-EKMSK 282 (481)
T ss_pred HHHHHcCCcceEEecccccCCCcchhHHHHHhhhc---CC--------------CcceEEEEe--cEE-Ee-cC-ceecc
Confidence 44444444568999999975 57775444444332 31 113333332 223 33 56 79999
Q ss_pred CCCCCCCcccCC
Q 016437 287 SAPSDQSRINLL 298 (389)
Q Consensus 287 S~~~~~s~I~L~ 298 (389)
|. +|.|.+.
T Consensus 283 Sl---GN~i~l~ 291 (481)
T PRK14534 283 SN---NNFITIK 291 (481)
T ss_pred cC---CCcccHH
Confidence 98 6888773
No 154
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.10 E-value=19 Score=36.89 Aligned_cols=28 Identities=39% Similarity=0.672 Sum_probs=20.8
Q ss_pred CCcchhhhHHHHHHHHHHHHccCcEEEEEeeccc
Q 016437 88 TGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHA 121 (389)
Q Consensus 88 TG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhA 121 (389)
.|..||||| |+.++- ...++|-|+|+.-
T Consensus 62 cGD~HLgN~-ga~~~~-----~G~V~f~i~DFDe 89 (410)
T COG4320 62 CGDAHLGNF-GAARNS-----KGNVVFKIADFDE 89 (410)
T ss_pred ecccccccc-hhhccC-----CCceEEEecccch
Confidence 578999998 665433 3478999999854
No 155
>PLN02943 aminoacyl-tRNA ligase
Probab=40.05 E-value=20 Score=41.44 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=42.6
Q ss_pred ceEEEe-ecCCCcchhhhHHHHHHH--HHHHH--ccCcEEEE-EeecccccC-----------CCC-----HHHHH----
Q 016437 79 KRIVSG-VQPTGSIHLGNYLGAIKN--WIALQ--NSYETLFF-IVDLHAITL-----------PYD-----TQQLS---- 132 (389)
Q Consensus 79 ~~i~sG-iqPTG~lHLGnylgai~~--~v~lQ--~~~~~~i~-IaDlhAlt~-----------~~d-----~~~i~---- 132 (389)
+.|..| =-+||.+|+||.+....+ .++.+ .|+++++. =.|-|++-. ..+ .+...
T Consensus 90 f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~ 169 (958)
T PLN02943 90 FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVW 169 (958)
T ss_pred EEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHH
Confidence 555555 467999999999865522 22333 37887664 456665532 111 12222
Q ss_pred ----HHHHHHHHHHHHcCC--CCCC
Q 016437 133 ----KATRETAAIYLACGI--DNSK 151 (389)
Q Consensus 133 ----~~~~~~~a~~lA~Gl--Dp~k 151 (389)
++...+..++..+|+ |.++
T Consensus 170 ~~~~~~~~~~~~~~~~lG~s~Dw~~ 194 (958)
T PLN02943 170 EWKEKYGGTITNQIKRLGASCDWSR 194 (958)
T ss_pred HHHHHHHHHHHHHHHHhCcceecCC
Confidence 334566777888887 6655
No 156
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=39.79 E-value=1.3e+02 Score=26.07 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=46.2
Q ss_pred EeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCC
Q 016437 83 SGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (389)
Q Consensus 83 sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~-~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~ 159 (389)
.-+-=||++..-+.+-+ |.+|.|-++++++-..==. ..-....+++.......+...|++|+++.+++=|-
T Consensus 32 IrvpC~Grv~~~~il~A------f~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILRA------FEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISA 103 (124)
T ss_pred EEccCCCccCHHHHHHH------HHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc
Confidence 34445788887775443 4567887887765522100 01234566777777788889999999998876554
No 157
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=39.31 E-value=15 Score=42.41 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=27.4
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHHc--cCcEEEEE-eecccc
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i~I-aDlhAl 122 (389)
+..|..|. -+||.||+||.++.... +.++|. |+++.+.. -|.|.+
T Consensus 26 kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~ 76 (938)
T TIGR00395 26 KFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGT 76 (938)
T ss_pred ceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCC
Confidence 35555555 56799999999876532 334443 77776643 344443
No 158
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=38.21 E-value=20 Score=40.71 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=29.8
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHHc--cCcEEEEE-eecccc
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i~I-aDlhAl 122 (389)
+..++.|. -|||.+|+||.+.-+.+ +.+.+. |+++++.. -|-|.+
T Consensus 37 ~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 37 EFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 46778887 45699999999876532 334443 77776543 466655
No 159
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=37.44 E-value=1.3e+02 Score=31.26 Aligned_cols=69 Identities=28% Similarity=0.292 Sum_probs=42.6
Q ss_pred hHHHhhhhhhcCCcEEeecCcch-HHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 016437 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (389)
Q Consensus 205 PvLQAADILl~~adiVpvG~DQ~-qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~K 283 (389)
..-|+..+|--.-|+--+|.|-. +|+|-..-...-. +|.. +-+..++.. . +... +| +|
T Consensus 203 Csam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~---~g~~-------------~~~~~w~H~--g-~l~~-~G-~K 261 (384)
T PRK12418 203 CSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAA---TGER-------------RFARHYVHA--G-MIGL-DG-EK 261 (384)
T ss_pred HHHHHHHHcCCCcccccCccccccchhHhHHHHHHHh---cCCC-------------CcceEEEEC--C-EECC-CC-Cc
Confidence 46788888877889999999965 6776443333322 3321 113344432 2 2343 67 79
Q ss_pred CCCCCCCCCCcccC
Q 016437 284 MSKSAPSDQSRINL 297 (389)
Q Consensus 284 MSKS~~~~~s~I~L 297 (389)
||||. +|.|.+
T Consensus 262 MSKSl---GN~i~~ 272 (384)
T PRK12418 262 MSKSR---GNLVFV 272 (384)
T ss_pred ccCcC---CCcCCH
Confidence 99997 688865
No 160
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=36.98 E-value=11 Score=39.01 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=17.5
Q ss_pred ccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccC
Q 016437 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (389)
Q Consensus 260 f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L 297 (389)
++.|..++.. ..+. + +| +|||||. ++.|..
T Consensus 309 ~~lP~~i~~~--~~~~-~-~g-~K~SkS~---gn~i~~ 338 (391)
T PF09334_consen 309 LPLPRRIVVH--GFLT-L-DG-EKMSKSR---GNVIWP 338 (391)
T ss_dssp B---SEEEEE----EE-E-TT-CCEETTT---TESSBH
T ss_pred CCCCCEEEee--eeEE-E-CC-eeccccC---CcccCH
Confidence 5667776653 2343 3 67 6999998 688864
No 161
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=35.31 E-value=1.8e+02 Score=26.14 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=32.3
Q ss_pred ecCCCcchhhhHHHHHHHHHHHHccCc-EEEEEe-ecccccC--CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCc
Q 016437 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIV-DLHAITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (389)
Q Consensus 85 iqPTG~lHLGnylgai~~~v~lQ~~~~-~~i~Ia-DlhAlt~--~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v 160 (389)
|+| +|+||.-- ++...+. ++ ++++|. +...... +.+.++-.+.++. .+...|+|-+++.+.-..|.
T Consensus 8 FdP---~H~GHl~~-i~~a~~~---~d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~---~~~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 8 FQP---FHLGHLKV-IKWILEE---VDELIIGIGSAQESHTLENPFTAGERVLMIRR---ALEEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred cCC---CCHHHHHH-HHHHHHH---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHH---HHHhcCCCcCeEEEEecCCC
Confidence 466 99999743 3444332 34 455453 3333322 3344432222222 22333666777777655544
No 162
>PLN02610 probable methionyl-tRNA synthetase
Probab=35.28 E-value=14 Score=41.88 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=19.5
Q ss_pred ccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccC
Q 016437 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (389)
Q Consensus 260 f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L 297 (389)
++.|..++.. ..+ .+ +| +|||||. +|.|+.
T Consensus 330 ~~~p~~i~~~--g~l-~~-eG-~KMSKS~---GNvV~p 359 (801)
T PLN02610 330 WTMMKTISVT--EYL-NY-EG-GKFSKSK---GVGVFG 359 (801)
T ss_pred cCCCCEEEec--cCE-ec-CC-ceecCcC---CcccCH
Confidence 4567766653 233 22 77 6999997 687764
No 163
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.72 E-value=26 Score=40.08 Aligned_cols=20 Identities=40% Similarity=0.396 Sum_probs=14.1
Q ss_pred ccccCCCCCCcCCCCCCCCCCcccC
Q 016437 273 RVMSLTDGLSKMSKSAPSDQSRINL 297 (389)
Q Consensus 273 ~lpgL~dg~~KMSKS~~~~~s~I~L 297 (389)
.+-+ .+| .|||||. ||.|..
T Consensus 517 LVrD-e~G-~KMSKS~---GNvIDP 536 (877)
T COG0525 517 LVRD-EQG-RKMSKSK---GNVIDP 536 (877)
T ss_pred eEEc-CCC-CCCcccC---CCcCCH
Confidence 3444 356 7999997 788843
No 164
>PLN02959 aminoacyl-tRNA ligase
Probab=34.45 E-value=51 Score=38.77 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCCcchhhhHHHHHHH--HHHHHc--cCcEEEEE-eecccc
Q 016437 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (389)
Q Consensus 87 PTG~lHLGnylgai~~--~v~lQ~--~~~~~i~I-aDlhAl 122 (389)
++|.|||||.+....+ ..+.|. |+++.|.. =|-|.+
T Consensus 56 ~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGl 96 (1084)
T PLN02959 56 MNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGM 96 (1084)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCc
Confidence 4799999999876643 344444 67765533 344544
No 165
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=31.01 E-value=2.3e+02 Score=28.35 Aligned_cols=71 Identities=25% Similarity=0.324 Sum_probs=49.3
Q ss_pred cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCc
Q 016437 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (389)
Q Consensus 215 ~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~ 294 (389)
.++|....|+--.|-+.+.|.+++.+| + |.-++.- +.+-. .||. =||+-+
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~--~------------------~v~I~~~--ptvRe-~dGL-A~SSRN------ 191 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLF--L------------------DIEIVPV--PIVRE-EDGL-ALSSRN------ 191 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcC--C------------------CceEEEe--CceEC-CCCC-chhhcc------
Confidence 389999999999999999999999998 2 2223321 33433 3674 677764
Q ss_pred ccCCCCHHHHHHHhhhcccCC
Q 016437 295 INLLDPKDVIANKIKRCKTDS 315 (389)
Q Consensus 295 I~L~Dspe~I~kKI~kA~TD~ 315 (389)
.+|+....+....|-++.+..
T Consensus 192 ~~Ls~~eR~~A~~l~~~L~~a 212 (282)
T TIGR00018 192 VYLTAEQRKIAPGLYRALQAI 212 (282)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 567777777777777665444
No 166
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=28.85 E-value=33 Score=39.71 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=29.3
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHH--ccCcEEEEE-eecccc
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQ--NSYETLFFI-VDLHAI 122 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i~I-aDlhAl 122 (389)
++.++.|. -+||.||+||.+....+ ..+.+ +|+++.+.. -|-|.+
T Consensus 42 ~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~Gl 92 (975)
T PRK06039 42 EFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGL 92 (975)
T ss_pred CEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCcc
Confidence 46777776 57899999999875532 33333 377776543 466665
No 167
>PHA01929 putative scaffolding protein
Probab=26.64 E-value=2.3e+02 Score=28.36 Aligned_cols=63 Identities=30% Similarity=0.380 Sum_probs=38.2
Q ss_pred CCCCCchhHHHHHHHHhcCCCHH--HHH----HHH----hcCHHHHHHHHHH-HHHHH-----------HHHHHHHHHHH
Q 016437 323 NLERPECNNLLSIYQLISGKTKG--VRY----EEI----MSDSAYLDKVLAD-GAAKA-----------ADIADATLNNV 380 (389)
Q Consensus 323 ~~~~p~~~nll~i~~~~~~~~~~--~r~----~~l----~~~~~~l~~iL~~-Ga~kA-----------r~~A~~tl~~v 380 (389)
-.++|.+..-+.|+..|+|.+.- +|- .|+ +=|..||.+.|-+ -+.++ ...++++++++
T Consensus 115 ~~gDp~laasv~~L~~~sg~~dlD~~RAfGKA~E~~DprfIDe~yL~E~LGe~~A~~~i~vA~~~l~~~~a~t~~~v~E~ 194 (306)
T PHA01929 115 LEGDPQLAPSVSYLEAFSGLDKLDTVRAFGKAAENRDPRFIDTHYLKEVLGEAQAQHVINVAKGVLTYVDAQTKAVVNET 194 (306)
T ss_pred ccCCcccchHHHHHHHHhcCcchHHHHHHHHHhhccCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999876532 111 111 1144566666655 44444 44455667777
Q ss_pred HHHcC
Q 016437 381 YQAMG 385 (389)
Q Consensus 381 ~~~~G 385 (389)
+++.|
T Consensus 195 ~~~~G 199 (306)
T PHA01929 195 YAAVG 199 (306)
T ss_pred HHccc
Confidence 77776
No 168
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=26.07 E-value=45 Score=39.65 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=28.8
Q ss_pred ceEEEee-cCCCcchhhhHHHHHHH--HHHHH--ccCcEEE-EEeecccc
Q 016437 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQ--NSYETLF-FIVDLHAI 122 (389)
Q Consensus 79 ~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i-~IaDlhAl 122 (389)
+.++.|- -+||.||+||.+.-..+ +.+.+ .|+++.+ +=-|-|.+
T Consensus 104 Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGl 153 (1205)
T PTZ00427 104 YIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGL 153 (1205)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCc
Confidence 5556775 56899999999865532 33333 3788766 44566766
No 169
>PLN02882 aminoacyl-tRNA ligase
Probab=25.26 E-value=49 Score=39.22 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=29.2
Q ss_pred ceEEEee-cCCCcchhhhHHHHHHH--HHHHH--ccCcEEE-EEeecccc
Q 016437 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQ--NSYETLF-FIVDLHAI 122 (389)
Q Consensus 79 ~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i-~IaDlhAl 122 (389)
+.++.|- -+||.+|+||.+....+ +.+++ .|+++.+ +=-|-|.+
T Consensus 40 f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGl 89 (1159)
T PLN02882 40 YIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGL 89 (1159)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCc
Confidence 5666665 46899999999875533 33444 3788765 45577766
No 170
>PLN02413 choline-phosphate cytidylyltransferase
Probab=24.86 E-value=1.6e+02 Score=29.77 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCceEEEeecCCCc---chhhhHHHHHHHHHH
Q 016437 68 TAPVASSSSVKKRIVSGVQPTGS---IHLGNYLGAIKNWIA 105 (389)
Q Consensus 68 ~~~~~~~~~~~~~i~sGiqPTG~---lHLGnylgai~~~v~ 105 (389)
.++.++...++.+||+- |. +|.||.- .|++..+
T Consensus 17 ~~~~~~~~~r~~rVyvd----G~FDLfH~GHir-~L~qAK~ 52 (294)
T PLN02413 17 ATPSSSPSDRPVRVYAD----GIYDLFHFGHAR-SLEQAKK 52 (294)
T ss_pred CCCCCCCCCCceEEEEe----CchhhCCHHHHH-HHHHHHH
Confidence 44455556667788764 63 9999964 4555543
No 171
>PF06254 DUF1019: Protein of unknown function (DUF1019); InterPro: IPR009364 This entry is represented by Bacteriophage phi-80, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 3C4R_C.
Probab=23.80 E-value=2.7e+02 Score=23.22 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=17.7
Q ss_pred HHHHHHh--cCHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHc
Q 016437 346 VRYEEIM--SDSA-YLDKVLADGAAKAADI---ADATLNNVYQAM 384 (389)
Q Consensus 346 ~r~~~l~--~~~~-~l~~iL~~Ga~kAr~~---A~~tl~~v~~~~ 384 (389)
||+..+. .+.. +|..+.++.++.-..+ |...+++|.+++
T Consensus 42 E~rarl~~~~~~~~~la~~~kE~~eA~~avlL~a~~~~ke~~eaI 86 (89)
T PF06254_consen 42 ERRARLSSGDSTMYLLASAAKECSEAKQAVLLGAHQKIKEVSEAI 86 (89)
T ss_dssp HHHHHHHCTT-HHH------HHHHHHHHHH-------HHHHHHHH
T ss_pred HHHhhccCCCCchhhhhHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 8888887 3333 5777777766655554 345566666653
No 172
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=23.76 E-value=3.3e+02 Score=30.38 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=39.6
Q ss_pred EEeecCCCcchhhhHHHHH-----HHHHHHHccCcEEEE--EeecccccC------CCC-HHH-HHHHHHHHHHHHHHcC
Q 016437 82 VSGVQPTGSIHLGNYLGAI-----KNWIALQNSYETLFF--IVDLHAITL------PYD-TQQ-LSKATRETAAIYLACG 146 (389)
Q Consensus 82 ~sGiqPTG~lHLGnylgai-----~~~v~lQ~~~~~~i~--IaDlhAlt~------~~d-~~~-i~~~~~~~~a~~lA~G 146 (389)
.+|--+=+.+||||....+ +.|++-..||+++|+ |.|..-=+. ..+ +.+ .+.++..+..++.++|
T Consensus 65 ~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~~~Ln 144 (651)
T PTZ00399 65 TCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALN 144 (651)
T ss_pred EeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 3453333779999987755 234321137888765 333321111 123 433 4456678888999999
Q ss_pred CCCC
Q 016437 147 IDNS 150 (389)
Q Consensus 147 lDp~ 150 (389)
+.|.
T Consensus 145 i~~p 148 (651)
T PTZ00399 145 VRPP 148 (651)
T ss_pred CCCC
Confidence 8764
No 173
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.51 E-value=92 Score=34.08 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=25.6
Q ss_pred ccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC-----CHHHHHHHhhhc
Q 016437 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 311 (389)
Q Consensus 260 f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D-----spe~I~kKI~kA 311 (389)
++.|..++.. ..+ -+ +| +|||||. ++.|...+ ++|.++--+.+.
T Consensus 315 ~~lP~~i~ah--g~l-~~-~G-~KmSKSr---G~~V~~~~~~~~~~~D~lRYyL~~~ 363 (558)
T COG0143 315 LPLPTRIFAH--GFL-TL-EG-QKMSKSR---GNVVDPDELLEQYGVDALRYYLARE 363 (558)
T ss_pred CCCCCEEEee--eeE-EE-CC-ccccccC---CcEEeHHHHHHHcCchHhHHHHHHh
Confidence 3457666553 122 22 66 6999998 78886544 555555544443
No 174
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.50 E-value=2.8e+02 Score=29.76 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=42.0
Q ss_pred cCCCcchhhhHHHHHH--HHHHHHc-cCcEEEE--EeecccccC-------CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 016437 86 QPTGSIHLGNYLGAIK--NWIALQN-SYETLFF--IVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNS 150 (389)
Q Consensus 86 qPTG~lHLGnylgai~--~~v~lQ~-~~~~~i~--IaDlhAlt~-------~~d~-~~i~~~~~~~~a~~lA~GlDp~ 150 (389)
-+-..+||||....+. ...++|. ..+..|| =.|-|.+-. ..+| +.+-.........|.+.|+.-.
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt 126 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYT 126 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchh
Confidence 3567799999987763 3445665 2233443 457887732 2344 4555567788888999998654
No 175
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.94 E-value=41 Score=36.33 Aligned_cols=32 Identities=41% Similarity=0.307 Sum_probs=25.5
Q ss_pred hHHHhhhhhhcCCcEEeecCcch-HHHHHHHHHHH
Q 016437 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAE 238 (389)
Q Consensus 205 PvLQAADILl~~adiVpvG~DQ~-qhleLtRdiA~ 238 (389)
.--||+|||-.+-||--+|.|=+ +|+| .|||.
T Consensus 247 CSaMas~~lG~~lDIH~GG~DL~FPHHe--NEiAQ 279 (586)
T KOG2007|consen 247 CSAMASAILGSQLDIHGGGIDLAFPHHE--NEIAQ 279 (586)
T ss_pred eHHHHHHhhccccceecCcccccCCCcc--cHHHH
Confidence 45799999999999999999975 5664 34444
No 176
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=22.06 E-value=2.9e+02 Score=28.26 Aligned_cols=70 Identities=30% Similarity=0.353 Sum_probs=50.9
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHHc---cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN---SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~~v~lQ~---~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if 155 (389)
..-+.-++||.+.+=|-.+| .-++||+ ...+||- ++-+.+..--+.+.+++.++.+-|.|+| .|+
T Consensus 81 rVaVlAVDPSSp~TGGsiLG---DRiRM~~~~~~~~vFiR-----s~~srG~lGGlS~at~~~i~~ldAaG~D----vII 148 (323)
T COG1703 81 RVAVLAVDPSSPFTGGSILG---DRIRMQRLAVDPGVFIR-----SSPSRGTLGGLSRATREAIKLLDAAGYD----VII 148 (323)
T ss_pred EEEEEEECCCCCCCCccccc---cHhhHHhhccCCCeEEe-----ecCCCccchhhhHHHHHHHHHHHhcCCC----EEE
Confidence 45688899999999888877 4566776 2345552 2222345567889999999999999998 355
Q ss_pred E------cCCc
Q 016437 156 V------QSHV 160 (389)
Q Consensus 156 ~------QS~v 160 (389)
+ ||++
T Consensus 149 VETVGvGQsev 159 (323)
T COG1703 149 VETVGVGQSEV 159 (323)
T ss_pred EEecCCCcchh
Confidence 4 9987
No 177
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.69 E-value=56 Score=37.53 Aligned_cols=49 Identities=27% Similarity=0.266 Sum_probs=0.0
Q ss_pred cCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC-----CHHHHHHHhhhcccCC
Q 016437 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRCKTDS 315 (389)
Q Consensus 261 ~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D-----spe~I~kKI~kA~TD~ 315 (389)
..|..-+--+ ++|-.- .| .|||||. +|.|.-.| +-+.+.+|+..-.-|+
T Consensus 574 ~lPF~~V~LH-~mVRDa-~G-RKMSKSL---GNVIDPlDVI~Gisle~L~~~L~~gNLdp 627 (995)
T KOG0432|consen 574 ELPFKEVLLH-GLVRDA-HG-RKMSKSL---GNVIDPLDVIDGISLEKLHAKLLSGNLDP 627 (995)
T ss_pred CCCchheeec-hhhccc-cc-cccchhh---ccccCHHHHhccccHHHHHHHHHcCCCCH
Done!