Query 016437
Match_columns 389
No_of_seqs 213 out of 1498
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 13:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3prh_A Tryptophanyl-tRNA synth 100.0 4.6E-90 1.6E-94 695.7 31.5 296 78-388 35-360 (388)
2 3sz3_A Tryptophanyl-tRNA synth 100.0 3.4E-90 1.2E-94 687.2 28.5 301 78-388 6-339 (341)
3 3n9i_A Tryptophanyl-tRNA synth 100.0 8.4E-90 2.9E-94 685.2 31.1 300 76-388 13-344 (346)
4 1i6k_A TRPRS, tryptophanyl-tRN 100.0 1E-84 3.5E-89 645.0 31.5 295 79-388 2-326 (328)
5 2yy5_A Tryptophanyl-tRNA synth 100.0 4.4E-84 1.5E-88 645.0 26.6 296 78-387 4-343 (348)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 1.5E-83 5.3E-88 635.1 29.0 287 78-386 3-322 (322)
7 1yi8_B Tryptophanyl-tRNA synth 100.0 2.2E-81 7.4E-86 626.3 31.4 295 76-388 20-350 (351)
8 2el7_A Tryptophanyl-tRNA synth 100.0 2E-81 6.7E-86 623.5 30.5 290 79-387 2-328 (337)
9 2g36_A Tryptophanyl-tRNA synth 100.0 1.1E-81 3.8E-86 626.0 28.2 291 76-387 10-339 (340)
10 3jxe_A Tryptophanyl-tRNA synth 100.0 9E-65 3.1E-69 512.5 20.8 234 76-342 71-313 (392)
11 3a04_A Tryptophanyl-tRNA synth 100.0 2.2E-62 7.4E-67 492.6 24.7 231 76-339 68-312 (372)
12 2cyc_A Tyrosyl-tRNA synthetase 100.0 4.8E-61 1.6E-65 483.3 21.8 233 77-340 32-297 (375)
13 2j5b_A Tyrosyl-tRNA synthetase 100.0 8.8E-61 3E-65 477.1 20.2 272 77-385 39-345 (348)
14 2cya_A Tyrosyl-tRNA synthetase 100.0 7E-60 2.4E-64 473.1 24.5 228 77-340 34-284 (364)
15 3vgj_A Tyrosyl-tRNA synthetase 100.0 4.6E-60 1.6E-64 475.8 22.5 228 76-337 54-290 (373)
16 3tze_A Tryptophanyl-tRNA synth 100.0 1.7E-58 5.7E-63 468.4 23.0 256 76-365 99-377 (406)
17 2ip1_A Tryptophanyl-tRNA synth 100.0 1.3E-60 4.4E-65 487.7 7.3 272 76-381 100-432 (432)
18 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.1E-58 3.7E-63 496.2 22.3 238 76-339 38-290 (690)
19 3hzr_A Tryptophanyl-tRNA synth 100.0 7.2E-58 2.4E-62 461.4 21.6 231 76-340 80-327 (386)
20 2cyb_A Tyrosyl-tRNA synthetase 100.0 3.3E-56 1.1E-60 439.5 25.4 225 76-340 30-259 (323)
21 3foc_A Tryptophanyl-tRNA synth 100.0 3.8E-56 1.3E-60 455.5 19.0 232 76-340 89-391 (451)
22 3hv0_A Tryptophanyl-tRNA synth 100.0 2.1E-55 7E-60 444.5 21.5 231 76-340 72-324 (393)
23 3i05_A Tryptophanyl-tRNA synth 100.0 1.6E-55 5.6E-60 445.5 17.0 231 76-340 76-327 (395)
24 2yxn_A Tyrosyl-tRNA synthetase 100.0 1.6E-55 5.5E-60 435.0 15.8 207 77-311 32-263 (322)
25 2zp1_A Tyrosyl-tRNA synthetase 100.0 3.3E-54 1.1E-58 424.3 23.8 218 76-340 26-249 (314)
26 1h3f_A Tyrosyl-tRNA synthetase 100.0 8.8E-55 3E-59 444.6 17.8 258 76-380 35-345 (432)
27 1n3l_A Tyrosyl-tRNA synthetase 100.0 6E-54 2E-58 431.2 23.0 224 77-338 34-266 (372)
28 2dlc_X Tyrosyl-tRNA synthetase 100.0 6.3E-54 2.2E-58 434.0 19.4 225 77-338 38-271 (394)
29 1r6u_A Tryptophanyl-tRNA synth 100.0 5.2E-54 1.8E-58 439.1 18.5 230 76-340 106-360 (437)
30 2pid_A Tyrosyl-tRNA synthetase 100.0 5.9E-54 2E-58 429.1 16.8 245 77-364 45-324 (356)
31 2jan_A Tyrosyl-tRNA synthetase 100.0 1.7E-53 5.8E-58 434.7 19.4 246 77-364 31-302 (432)
32 1r6t_A Tryptophanyl-tRNA synth 100.0 2.8E-53 9.6E-58 438.2 20.3 230 76-340 153-407 (477)
33 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 1.3E-51 4.6E-56 420.0 22.3 256 77-377 31-324 (420)
34 1y42_X Tyrosyl-tRNA synthetase 100.0 3.1E-51 1.1E-55 414.0 21.4 258 77-364 63-363 (392)
35 2ts1_A Tyrosyl-tRNA synthetase 100.0 5.4E-52 1.9E-56 422.5 15.6 257 77-377 29-323 (419)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 4.2E-40 1.4E-44 352.7 24.4 221 73-339 377-608 (690)
37 1nzj_A Hypothetical protein YA 99.4 5.6E-13 1.9E-17 130.2 7.6 195 84-310 11-253 (298)
38 2ja2_A Glutamyl-tRNA synthetas 99.3 6.6E-13 2.3E-17 137.8 5.9 200 84-311 12-287 (498)
39 1j09_A Glutamyl-tRNA synthetas 99.2 3.4E-12 1.1E-16 131.7 5.2 193 86-311 9-273 (468)
40 3afh_A Glutamyl-tRNA synthetas 99.2 2.1E-12 7E-17 133.9 1.1 200 79-311 26-285 (488)
41 3al0_C Glutamyl-tRNA(Gln) amid 99.1 6.8E-12 2.3E-16 132.7 0.0 200 79-311 130-389 (592)
42 2cfo_A Glutamyl-tRNA synthetas 99.0 3.7E-10 1.3E-14 117.1 8.7 195 83-311 6-277 (492)
43 2o5r_A Glutamyl-tRNA synthetas 98.6 1.7E-07 5.8E-12 97.0 12.1 200 79-311 14-292 (481)
44 4g6z_A Glutamate-tRNA ligase; 98.6 3.4E-07 1.1E-11 94.9 12.6 200 78-311 25-294 (490)
45 4gri_A Glutamate--tRNA ligase; 98.3 5.9E-06 2E-10 86.0 13.4 220 80-340 26-324 (512)
46 3aii_A Glutamyl-tRNA synthetas 98.1 1.5E-05 5.3E-10 83.5 13.0 176 81-288 97-334 (553)
47 1qtq_A GLNRS, protein (glutami 97.9 8.9E-05 3.1E-09 77.8 13.3 95 79-180 27-130 (553)
48 2d5b_A Methionyl-tRNA syntheta 97.7 0.00056 1.9E-08 70.0 16.0 79 79-159 4-97 (500)
49 4dlp_A Aminoacyl-tRNA syntheta 97.7 0.00043 1.5E-08 71.9 14.9 80 78-159 25-119 (536)
50 2hz7_A Glutaminyl-tRNA synthet 97.7 0.00044 1.5E-08 75.8 14.6 94 80-180 68-170 (851)
51 2csx_A Methionyl-tRNA syntheta 97.5 0.0015 5.2E-08 66.9 15.9 79 79-159 6-99 (497)
52 3h99_A Methionyl-tRNA syntheta 97.5 0.0021 7E-08 67.1 16.0 80 77-158 17-111 (560)
53 3tqo_A Cysteinyl-tRNA syntheta 97.2 0.0067 2.3E-07 62.4 16.0 71 80-151 28-112 (462)
54 1iq0_A Arginyl-tRNA synthetase 97.1 0.00028 9.6E-09 74.5 4.9 41 79-119 106-152 (592)
55 1li5_A Cysrs, cysteinyl-tRNA s 97.0 0.0025 8.4E-08 65.4 10.3 79 80-159 25-116 (461)
56 2zue_A Arginyl-tRNA synthetase 95.8 0.0084 2.9E-07 63.8 5.4 39 81-119 124-168 (629)
57 1irx_A Lysyl-tRNA synthetase; 95.2 0.025 8.6E-07 58.6 6.5 78 79-159 22-129 (523)
58 3u1f_A Methionyl-tRNA syntheta 94.9 0.14 4.8E-06 52.7 11.2 89 75-167 7-110 (542)
59 3kfl_A Methionyl-tRNA syntheta 92.5 0.69 2.4E-05 48.2 11.2 72 86-159 36-120 (564)
60 1rqg_A Methionyl-tRNA syntheta 91.2 0.74 2.5E-05 49.6 9.9 85 78-165 3-102 (722)
61 2x1l_A Methionyl-tRNA syntheta 89.1 1.3 4.5E-05 45.3 9.4 72 86-159 22-106 (524)
62 3u1f_A Methionyl-tRNA syntheta 89.1 0.37 1.3E-05 49.6 5.2 54 216-297 278-334 (542)
63 2x1l_A Methionyl-tRNA syntheta 88.5 0.31 1.1E-05 50.0 4.2 58 215-298 264-322 (524)
64 3kfl_A Methionyl-tRNA syntheta 88.2 0.37 1.3E-05 50.2 4.6 56 215-298 293-351 (564)
65 1wkb_A Leucyl-tRNA synthetase; 87.1 0.58 2E-05 50.8 5.4 61 215-299 602-663 (810)
66 3fnr_A Arginyl-tRNA synthetase 86.0 0.18 6.1E-06 51.8 0.6 40 82-121 36-81 (464)
67 1wz2_A Leucyl-tRNA synthetase; 85.3 0.65 2.2E-05 51.6 4.7 71 215-309 602-678 (967)
68 1ffy_A Isoleucyl-tRNA syntheta 83.7 1.2 4.2E-05 49.2 6.0 80 214-322 546-634 (917)
69 3c8z_A Cysteinyl-tRNA syntheta 83.5 4.1 0.00014 40.6 9.3 79 79-159 41-133 (414)
70 3sp1_A Cysteinyl-tRNA syntheta 82.6 6.1 0.00021 40.9 10.4 71 80-151 45-139 (501)
71 3c8z_A Cysteinyl-tRNA syntheta 82.5 0.45 1.5E-05 47.7 1.8 90 208-323 236-332 (414)
72 4arc_A Leucine--tRNA ligase; l 82.5 4.1 0.00014 44.9 9.5 72 78-150 54-140 (880)
73 1gax_A Valrs, valyl-tRNA synth 80.6 1.1 3.8E-05 49.3 4.2 59 215-298 480-540 (862)
74 1ile_A Ilers, isoleucyl-tRNA s 77.6 1.1 3.7E-05 48.9 2.9 72 215-310 543-620 (821)
75 1gax_A Valrs, valyl-tRNA synth 75.2 4.9 0.00017 44.2 7.3 73 78-150 35-137 (862)
76 1irx_A Lysyl-tRNA synthetase; 75.1 1.9 6.3E-05 44.5 3.7 82 216-324 230-320 (523)
77 3sp1_A Cysteinyl-tRNA syntheta 71.3 2 6.7E-05 44.6 2.8 66 207-297 244-310 (501)
78 1wkb_A Leucyl-tRNA synthetase; 69.5 5.5 0.00019 43.1 6.0 44 79-122 36-85 (810)
79 4arc_A Leucine--tRNA ligase; l 68.1 7.1 0.00024 43.0 6.5 28 214-241 541-569 (880)
80 1ffy_A Isoleucyl-tRNA syntheta 66.0 6.5 0.00022 43.5 5.7 74 78-151 49-150 (917)
81 2v0c_A Aminoacyl-tRNA syntheta 64.2 7 0.00024 43.0 5.5 25 215-239 530-555 (878)
82 2v0c_A Aminoacyl-tRNA syntheta 63.4 11 0.00038 41.4 6.9 72 78-150 34-120 (878)
83 1f7u_A Arginyl-tRNA synthetase 57.7 6.6 0.00023 41.4 3.7 38 82-119 149-192 (607)
84 3oqi_A YVMC, putative uncharac 57.5 44 0.0015 31.6 9.0 80 78-161 29-121 (257)
85 1ile_A Ilers, isoleucyl-tRNA s 55.0 5.8 0.0002 43.1 2.9 45 78-122 39-89 (821)
86 3fnr_A Arginyl-tRNA synthetase 52.1 9.2 0.00031 39.0 3.6 62 216-299 234-298 (464)
87 1wz2_A Leucyl-tRNA synthetase; 43.6 7.9 0.00027 42.9 1.7 45 78-122 35-85 (967)
88 3foc_A Tryptophanyl-tRNA synth 38.6 6 0.00021 40.4 -0.3 15 218-232 235-249 (451)
89 3oqv_A ALBC; rossman fold, cyc 37.5 69 0.0024 30.1 6.8 82 77-160 28-122 (247)
90 1rqg_A Methionyl-tRNA syntheta 31.5 8.2 0.00028 41.4 -0.7 44 260-311 326-374 (722)
91 1f7u_A Arginyl-tRNA synthetase 27.6 22 0.00075 37.4 1.8 39 200-241 343-390 (607)
92 4erh_A Outer membrane protein 21.9 2.7E+02 0.0092 22.9 7.4 58 97-154 38-100 (148)
93 1y66_A Engrailed homeodomain; 21.7 1.1E+02 0.0037 21.3 3.8 32 355-386 5-36 (52)
No 1
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=4.6e-90 Score=695.71 Aligned_cols=296 Identities=49% Similarity=0.779 Sum_probs=274.5
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 157 (389)
+++|||||+|||.+|||||+|+|++|++||++++|+|+||||||+|++.+++++++++++++++|+||||||+|++||+|
T Consensus 35 ~~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~q 114 (388)
T 3prh_A 35 KQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQ 114 (388)
T ss_dssp CCEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CCeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEec
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHHHH
Q 016437 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (389)
Q Consensus 158 S~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRdiA 237 (389)
|+|++|+||+|+|+|.++++||+|+++||++.+.. +++++|+|+||+|||||||+|++|+||||+||+||+|||||||
T Consensus 115 S~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia 192 (388)
T 3prh_A 115 SEVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLA 192 (388)
T ss_dssp GGSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHH
Confidence 99999999999999999999999999999987653 6789999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccCCCC
Q 016437 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (389)
Q Consensus 238 ~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~~~ 317 (389)
+|||+.||. +|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 193 ~rfn~~y~~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~~ 260 (388)
T 3prh_A 193 ERFNKKYND------------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEG 260 (388)
T ss_dssp HHHHHHTCS------------CCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSSC
T ss_pred HHhCcccCC------------CcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCCC
Confidence 999999983 59999999987778999998888999999998899999999999999999999999999
Q ss_pred CcCcCCCCCCchhHHHHHHHHhcCCCHH------------------------------HHHHHHhcCHHHHHHHHHHHHH
Q 016437 318 GLEFDNLERPECNNLLSIYQLISGKTKG------------------------------VRYEEIMSDSAYLDKVLADGAA 367 (389)
Q Consensus 318 ~~~~~~~~~p~~~nll~i~~~~~~~~~~------------------------------~r~~~l~~~~~~l~~iL~~Ga~ 367 (389)
.++++++++|+++|+++||++|++++.+ +||+++++|+ +|++||++|++
T Consensus 261 ~~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~lK~~lae~l~~~l~pirer~~~~~~~~-~l~~il~~Ga~ 339 (388)
T 3prh_A 261 IVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIESE-ELDRILDEGAE 339 (388)
T ss_dssp CCCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSH-HHHHHHHHHHH
T ss_pred cccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHH
Confidence 9999999999999999999999887644 9999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 016437 368 KAADIADATLNNVYQAMGFLR 388 (389)
Q Consensus 368 kAr~~A~~tl~~v~~~~G~~~ 388 (389)
|||++|++||++||++|||.+
T Consensus 340 kA~~~A~~tl~~v~~~~g~~~ 360 (388)
T 3prh_A 340 RANRTANKMLKKMENAMGLGR 360 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999963
No 2
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=3.4e-90 Score=687.15 Aligned_cols=301 Identities=46% Similarity=0.758 Sum_probs=283.8
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 157 (389)
+++|||||+|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+||||||+|++||+|
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHHHH
Q 016437 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (389)
Q Consensus 158 S~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRdiA 237 (389)
|+|++|.+|+|+|+|++++++|+||++||++..+.+ +++++|+|+||+|||||||+|++|+||||+||+||+|||||||
T Consensus 86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999987653 5789999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccCCCC
Q 016437 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (389)
Q Consensus 238 ~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~~~ 317 (389)
+|||++||.+ .++|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 165 ~rfn~~yg~~---------~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td~~~ 235 (341)
T 3sz3_A 165 TRFNNIYSPE---------QPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAET 235 (341)
T ss_dssp HHHHHHHCSS---------SCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCCCCS
T ss_pred HHhchhccCC---------CcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Confidence 9999999831 1259999999987558999998888899999987789999999999999999999999987
Q ss_pred --CcCcCCCCCCchhHHHHHHHHhcCCCHH-------------------------------HHHHHHhcCHHHHHHHHHH
Q 016437 318 --GLEFDNLERPECNNLLSIYQLISGKTKG-------------------------------VRYEEIMSDSAYLDKVLAD 364 (389)
Q Consensus 318 --~~~~~~~~~p~~~nll~i~~~~~~~~~~-------------------------------~r~~~l~~~~~~l~~iL~~ 364 (389)
.+.++++++|+++|++.||++|++++.+ +||+++++|++||++||++
T Consensus 236 ~~~~~~~~~~~p~v~~l~~~~~~~~~~~~e~i~~~~~g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~ 315 (341)
T 3sz3_A 236 PPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRD 315 (341)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcccccCCCCCcchhHHHHHHHHcCCccHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5778999999999999999999887643 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcc
Q 016437 365 GAAKAADIADATLNNVYQAMGFLR 388 (389)
Q Consensus 365 Ga~kAr~~A~~tl~~v~~~~G~~~ 388 (389)
|++|||++|++||++||++|||.+
T Consensus 316 G~~kA~~~A~~tl~~v~~~~g~~~ 339 (341)
T 3sz3_A 316 GAEKASAKALQTLKKVYAAVGFVA 339 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999964
No 3
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=8.4e-90 Score=685.23 Aligned_cols=300 Identities=49% Similarity=0.801 Sum_probs=283.0
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if 155 (389)
..+++||||++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+||||||+|++||
T Consensus 13 ~~~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if 92 (346)
T 3n9i_A 13 SSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIF 92 (346)
T ss_dssp --CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEE
T ss_pred CCCCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHH
Q 016437 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (389)
Q Consensus 156 ~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRd 235 (389)
+||+|++|.+|+|+|.|.+++++|+|+++||++..+.+ +++++|+|+||+|||||||+|++|+||||+||+||+|||||
T Consensus 93 ~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRd 171 (346)
T 3n9i_A 93 VQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRD 171 (346)
T ss_dssp EGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHH
Confidence 99999999999999999999999999999999887643 56899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccCC
Q 016437 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315 (389)
Q Consensus 236 iA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~ 315 (389)
||+|||++||. +|++|++++++.+++||||+||++|||||+++++|+|+|+|+|++|++|||+|+||+
T Consensus 172 ia~rfn~~yg~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~ 239 (346)
T 3n9i_A 172 IASRFNNLYGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDS 239 (346)
T ss_dssp HHHHHHHHHSS------------CSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHhccccCC------------cccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCC
Confidence 99999999983 489999999876689999999988999999876799999999999999999999999
Q ss_pred CC--CcCcCCCCCCchhHHHHHHHHhcCCCHH------------------------------HHHHHHhcCHHHHHHHHH
Q 016437 316 SA--GLEFDNLERPECNNLLSIYQLISGKTKG------------------------------VRYEEIMSDSAYLDKVLA 363 (389)
Q Consensus 316 ~~--~~~~~~~~~p~~~nll~i~~~~~~~~~~------------------------------~r~~~l~~~~~~l~~iL~ 363 (389)
.. .+.++++++|+++|++.||..|++++.+ +||+++++|++||++||+
T Consensus 240 ~~~~~~~~~~~~~p~v~~l~~~~~~~~~~~~eel~~~y~~~~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~ 319 (346)
T 3n9i_A 240 DEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMR 319 (346)
T ss_dssp CSSCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCccccCCCCCCCChhHHHHHHHhcCCccHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 86 4678889999999999999999887644 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcc
Q 016437 364 DGAAKAADIADATLNNVYQAMGFLR 388 (389)
Q Consensus 364 ~Ga~kAr~~A~~tl~~v~~~~G~~~ 388 (389)
+|++|||++|++||++||++|||.+
T Consensus 320 ~G~~kA~~~A~~tl~~v~~~~g~~~ 344 (346)
T 3n9i_A 320 EGAAKARARAQVTLAKVYEAIGFVA 344 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999975
No 4
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=1e-84 Score=645.01 Aligned_cols=295 Identities=49% Similarity=0.785 Sum_probs=277.6
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcC
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS 158 (389)
++|||||+|||.||||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|||+||+|++||+||
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS 81 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS 81 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHHHHH
Q 016437 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (389)
Q Consensus 159 ~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRdiA~ 238 (389)
+|++|.+++|+++|++++++|+||++||++..+. +.+++|+|+||+|||||||+|++|+||||+||+||+|++||||+
T Consensus 82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~~--~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~ 159 (328)
T 1i6k_A 82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGK--EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE 159 (328)
T ss_dssp GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTTC--SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhccccHHHHHHHHHHHHHHhcc--CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999987652 67899999999999999999999999999999999999999999
Q ss_pred HhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccCCCCC
Q 016437 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318 (389)
Q Consensus 239 rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~~~~ 318 (389)
|||+.||. +|++|++++++.+++||||++|++|||||+++..|+|+|+|+|++|++|||+|+||+.++
T Consensus 160 r~n~~yg~------------~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~~~ 227 (328)
T 1i6k_A 160 RFNKRYGE------------LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227 (328)
T ss_dssp HHHHHHCS------------CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred HhCccccc------------ccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCccc
Confidence 99999983 599999999866699999966668999999642234999999999999999999999998
Q ss_pred cCcCCCCCCchhHHHHHHHHhcCCCHH------------------------------HHHHHHhcCHHHHHHHHHHHHHH
Q 016437 319 LEFDNLERPECNNLLSIYQLISGKTKG------------------------------VRYEEIMSDSAYLDKVLADGAAK 368 (389)
Q Consensus 319 ~~~~~~~~p~~~nll~i~~~~~~~~~~------------------------------~r~~~l~~~~~~l~~iL~~Ga~k 368 (389)
+.|++.++|+++|++.||.+|++++.+ +||+++++|++ |++||++|++|
T Consensus 228 ~~~~~~~~p~v~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~-~~~il~~g~~~ 306 (328)
T 1i6k_A 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRVLDEGAEK 306 (328)
T ss_dssp CCCBTTTBHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTH-HHHHHHHHHHH
T ss_pred cccCCCCCcchhhHHHHHHHCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChh-HHHHHHHHHHH
Confidence 999988889999999999999887654 99999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcc
Q 016437 369 AADIADATLNNVYQAMGFLR 388 (389)
Q Consensus 369 Ar~~A~~tl~~v~~~~G~~~ 388 (389)
||++|++||++||++|||.+
T Consensus 307 a~~~a~~~~~~v~~~~g~~~ 326 (328)
T 1i6k_A 307 ANRVASEMVRKMEQAMGLGR 326 (328)
T ss_dssp HHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999964
No 5
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=4.4e-84 Score=645.00 Aligned_cols=296 Identities=38% Similarity=0.585 Sum_probs=273.9
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 157 (389)
+++|||||+|||.||||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q 83 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ 83 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-----CCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHH
Q 016437 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (389)
Q Consensus 158 S~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-----~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleL 232 (389)
|+|++|.+++|+|+|++++++|+|+++||++.++.+ .+.+++|+|+||+|||||||+|++|+||||+||+||+|+
T Consensus 84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel 163 (348)
T 2yy5_A 84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL 163 (348)
T ss_dssp GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence 999999999999999999999999999998875432 357899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcc
Q 016437 233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312 (389)
Q Consensus 233 tRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~ 312 (389)
+||||+|||+.||. +|++|++++++.+++||||++|++|||||+++++|+|+|+|+|++|++|||+|+
T Consensus 164 ~Rdia~r~n~~yg~------------~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a~ 231 (348)
T 2yy5_A 164 TRDLAQRIQKKFKL------------KLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQAT 231 (348)
T ss_dssp HHHHHHHHHHHHCC------------CCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhhccc------------ccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhCC
Confidence 99999999999983 589999999876689999976678999999754459999999999999999999
Q ss_pred cCCCCCcCcCCCCCCchhHHHHHHHHhcCCCH------------H---------------------------HHHHHHhc
Q 016437 313 TDSSAGLEFDNLERPECNNLLSIYQLISGKTK------------G---------------------------VRYEEIMS 353 (389)
Q Consensus 313 TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~------------~---------------------------~r~~~l~~ 353 (389)
||+.+++.++|.++|+++|++.||.+|++++. + +||+++ +
T Consensus 232 td~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~-~ 310 (348)
T 2yy5_A 232 TDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNIQRKREQI-S 310 (348)
T ss_dssp CCSSCCCSCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSS-C
T ss_pred CCCccccccCCCCCCchhhHHHHHHhCChHhhhhhcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 99998899998889999999999999976421 1 899999 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 016437 354 DSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387 (389)
Q Consensus 354 ~~~~l~~iL~~Ga~kAr~~A~~tl~~v~~~~G~~ 387 (389)
|++ |++||++|++|||++|++||++||++|||.
T Consensus 311 d~~-~~~~l~~G~~~a~~~a~~t~~~v~~~~g~~ 343 (348)
T 2yy5_A 311 REQ-VFNCLQAGKNQAQATARTTLALFYDGFGLG 343 (348)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888 999999999999999999999999999985
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=1.5e-83 Score=635.14 Aligned_cols=287 Identities=36% Similarity=0.630 Sum_probs=267.7
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 157 (389)
..+|||||+|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|||+||+|++||+|
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q 82 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ 82 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 46899999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHHHH
Q 016437 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (389)
Q Consensus 158 S~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRdiA 237 (389)
|+|++|.++.|+++|++++++|+|+++||++.... +++++|+|+||+|||||||+|++|+||||.||+||+|++||||
T Consensus 83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia 160 (322)
T 3tzl_A 83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA 160 (322)
T ss_dssp GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999987653 5789999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccCCCC
Q 016437 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (389)
Q Consensus 238 ~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~~~ 317 (389)
+|||++||. +|++|++++...+++|||| || +|||||++ |+|+|+|+|++|++|||+|+||+.+
T Consensus 161 ~r~n~~~g~------------~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~---n~I~L~d~p~~i~~KI~~a~td~~~ 223 (322)
T 3tzl_A 161 LKVNNEWGE------------IFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ---NTIDIFSSEKTLKKQISSIVTDSTA 223 (322)
T ss_dssp HHHHHHHCS------------CSCCCEEECCCSSCCCBCT-TS-SBCCGGGT---CCCBSSCCHHHHHHHHHTCCCCCCC
T ss_pred HHhcccccC------------CCCCchhhhccccccccCC-CC-CcCCCCCC---CceecCCCHHHHHHHHHhccCCCcc
Confidence 999999983 5999999987555899999 78 79999984 6899999999999999999999987
Q ss_pred CcCcCCCCCCchhHHHHHHHHhcCC-CHH--------------------------------HHHHHHhcCHHHHHHHHHH
Q 016437 318 GLEFDNLERPECNNLLSIYQLISGK-TKG--------------------------------VRYEEIMSDSAYLDKVLAD 364 (389)
Q Consensus 318 ~~~~~~~~~p~~~nll~i~~~~~~~-~~~--------------------------------~r~~~l~~~~~~l~~iL~~ 364 (389)
. + ++++|+++++++|+++|+.. +.+ +||+++++|++||++||++
T Consensus 224 ~--~-~~~~~~~~~v~~~~~~~~~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~ 300 (322)
T 3tzl_A 224 L--E-DPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDF 300 (322)
T ss_dssp T--T-SCCCGGGCHHHHHHGGGCCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred c--c-CCCCCcchhHHHHHHHhCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHH
Confidence 5 3 36789999999999999632 111 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 016437 365 GAAKAADIADATLNNVYQAMGF 386 (389)
Q Consensus 365 Ga~kAr~~A~~tl~~v~~~~G~ 386 (389)
|++|||++|++||++||++|||
T Consensus 301 G~~~a~~~a~~t~~~v~~~~g~ 322 (322)
T 3tzl_A 301 GATKARKIAQEKMQKIYEKIGL 322 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999997
No 7
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=2.2e-81 Score=626.29 Aligned_cols=295 Identities=31% Similarity=0.452 Sum_probs=273.6
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~-~~d~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (389)
..+++||+||+|||.||||||+|+|++|++||+.++++|+|||+||+|+ +.+++++++++++++++|+|||+||+|++|
T Consensus 20 ~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i 99 (351)
T 1yi8_B 20 PARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTC 99 (351)
T ss_dssp -CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEE
T ss_pred CCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEE
Confidence 5678999999999999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred EEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHH
Q 016437 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (389)
Q Consensus 155 f~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLt 233 (389)
|+||+|++|.++.|+|+|+++++||+|+++||++.+..+ .+++++|+|+||+|||||||+|++|+||||+||+||+|++
T Consensus 100 ~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~ 179 (351)
T 1yi8_B 100 VVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQT 179 (351)
T ss_dssp EEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHH
T ss_pred EEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHH
Confidence 999999999999999999999999999999999987543 3678999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhccc
Q 016437 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313 (389)
Q Consensus 234 RdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~T 313 (389)
||||+|||+.||. +|++|+++++.. ++|||| ||++|||||++ |+|+|+|+|++|++|||+|+|
T Consensus 180 rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~~l-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~t 242 (351)
T 1yi8_B 180 REIVRRFNALYAP------------VLAEPQAQLSRV-PRLPGL-DGQAKMSKSLG---NAIALGDSADEVARKVMGMYT 242 (351)
T ss_dssp HHHHHHHHHHTCS------------CSCCCEEEECSS-CSCCCT-TSSSCCCTTTT---CCCBTTCCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhccc------------ccCCCeeeeecC-ccccCC-CCccccCCCCC---CeecCCCCHHHHHHHHHhcCC
Confidence 9999999999983 489999988644 899999 89779999985 589999999999999999999
Q ss_pred CCCCCcCcCCCCCCchhHHHHHHHHhcC-CCH-H--------------------------------HHHHHHhcCHHHHH
Q 016437 314 DSSAGLEFDNLERPECNNLLSIYQLISG-KTK-G--------------------------------VRYEEIMSDSAYLD 359 (389)
Q Consensus 314 D~~~~~~~~~~~~p~~~nll~i~~~~~~-~~~-~--------------------------------~r~~~l~~~~~~l~ 359 (389)
|+.+.+.+++ +++++++++.++++|+. .+. + +||+++++|++||+
T Consensus 243 d~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~l~ 321 (351)
T 1yi8_B 243 DPGHLRASDP-GRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVL 321 (351)
T ss_dssp CTTCCSTTSC-CCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcccccccCC-CCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHH
Confidence 9998888874 67899999999999873 322 1 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 016437 360 KVLADGAAKAADIADATLNNVYQAMGFLR 388 (389)
Q Consensus 360 ~iL~~Ga~kAr~~A~~tl~~v~~~~G~~~ 388 (389)
+||++|++|||++|++||++||++|||..
T Consensus 322 ~il~~G~~~a~~~a~~t~~~v~~~~g~~~ 350 (351)
T 1yi8_B 322 RFVTEGTARGREVAAQTLGQVRRAMRLFG 350 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 99999999999999999999999999953
No 8
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=2e-81 Score=623.53 Aligned_cols=290 Identities=45% Similarity=0.727 Sum_probs=261.7
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHHc-c-CcEEEEEeecccccCC--CCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSKASV 154 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~-~~~~i~IaDlhAlt~~--~d~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (389)
++||+||+|||.||||||+|+|++|++||+ | ++++|+|||+||+|++ .+++.+++++++++++|+|||+||+|++|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 589999999999999999999999999998 4 9999999999999997 89999999999999999999999999999
Q ss_pred EEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHH
Q 016437 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (389)
Q Consensus 155 f~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtR 234 (389)
|+||+|++|.++.|+|+|++++++|+|+++||++.+. .+++++|+|+||+||||||++|++|+||||+||+||++++|
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r 159 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR 159 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence 9999999999999999999999999999999997653 35789999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccC
Q 016437 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314 (389)
Q Consensus 235 diA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD 314 (389)
|||+|||+.||. +|++|+++++..+++|||| ||++|||||++ |+|+|+|+|++|++||++|+||
T Consensus 160 dla~r~n~~~g~------------~f~~P~~~~~~~~p~l~gl-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~td 223 (337)
T 2el7_A 160 EIARRFNHLFGE------------TFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223 (337)
T ss_dssp HHHHHHHHHHSS------------CCCCCEEECCTTSCCCBCT-TSSSBCCTTTT---CCCBSSSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHhhcCc------------ccCCCeeecccccccccCC-CCccccCCCCC---CeeeCcCCHHHHHHHHHhCCCC
Confidence 999999999983 4899999998766899999 67779999985 5999999999999999999999
Q ss_pred CCCCcCcCCCCCCchhHHHHHHHHhcCC-CHH--------------------------------HHHHHHhcCHHHHHHH
Q 016437 315 SSAGLEFDNLERPECNNLLSIYQLISGK-TKG--------------------------------VRYEEIMSDSAYLDKV 361 (389)
Q Consensus 315 ~~~~~~~~~~~~p~~~nll~i~~~~~~~-~~~--------------------------------~r~~~l~~~~~~l~~i 361 (389)
+.++++++| ++|++||+++||++|++. +.+ +||+++++|+++|++|
T Consensus 224 ~~~~~~~~~-~~p~~~~v~~~~~~~t~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~i 302 (337)
T 2el7_A 224 PQRIRLSDP-GDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDA 302 (337)
T ss_dssp C--------------CHHHHHHHHHSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CccccccCC-CCCchhhHHHHHHHcCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHH
Confidence 999998875 559999999999999886 332 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc
Q 016437 362 LADGAAKAADIADATLNNVYQAMGFL 387 (389)
Q Consensus 362 L~~Ga~kAr~~A~~tl~~v~~~~G~~ 387 (389)
|++|++|||++|++||++||++|||.
T Consensus 303 l~~G~~~a~~~a~~~~~~v~~~~g~~ 328 (337)
T 2el7_A 303 LLEGAKRARAVAQATMEEVREKVGLL 328 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999985
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-81 Score=625.96 Aligned_cols=291 Identities=37% Similarity=0.601 Sum_probs=267.9
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKAS 153 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~~d~~~i~~~~~~~~a~~lA~GlDp~k~~ 153 (389)
-..++||+|++|||.||||||+|+|++|++||+ |++++|+||||||+|+ +.||+++++++++++++|+|||+||+|++
T Consensus 10 ~~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~ 89 (340)
T 2g36_A 10 HHHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSV 89 (340)
T ss_dssp --CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred cCCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeE
Confidence 346899999999999999999999999999998 5999999999999998 78999999999999999999999999999
Q ss_pred EEEcCCchhhhHHHHHHhccCcHHHHhchhhHHH---HHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHH
Q 016437 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (389)
Q Consensus 154 if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~---k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhl 230 (389)
||+||+|++|.++.|+|+|.++++||+|+++||+ +... .+.+++|+|+||+|||||||+|++|+||||+||+||+
T Consensus 90 if~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi 167 (340)
T 2g36_A 90 IFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHI 167 (340)
T ss_dssp EEEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHH
T ss_pred EEECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHH
Confidence 9999999999999999999999999999999998 6543 2568999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhh
Q 016437 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (389)
Q Consensus 231 eLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~k 310 (389)
|++||||+|||+.||. +|++|++++... ++|||| ||+ |||||++ |+|+|+|+|++|++|||+
T Consensus 168 ~l~rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~gl-dG~-KMSKS~~---n~I~L~dsp~~i~~Ki~~ 229 (340)
T 2g36_A 168 ELTREIARRFNYLYDE------------VFPEPEAILSRV-PKLPGT-DGR-KMSKSYG---NIINLEISEKELEQTILR 229 (340)
T ss_dssp HHHHHHHHHHHHHSCC------------CCCCCEEEECCS-CCCCCT-TSS-CCCGGGT---CCCBTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhccc------------ccCCchhhhccc-cccCCC-Ccc-ccCCCCC---CeEeeeCCHHHHHHHHHh
Confidence 9999999999999983 589999887554 899999 685 9999984 689999999999999999
Q ss_pred cccCCCCCcCcCCCCCCchhHHHHHHHHhcC-CCH-H--------------------------------HHHHHHhcCHH
Q 016437 311 CKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTK-G--------------------------------VRYEEIMSDSA 356 (389)
Q Consensus 311 A~TD~~~~~~~~~~~~p~~~nll~i~~~~~~-~~~-~--------------------------------~r~~~l~~~~~ 356 (389)
|+||+.+.+.++| ++|++||+++||++|++ .+. + +||+++++|++
T Consensus 230 a~td~~~~~~~~~-~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~ 308 (340)
T 2g36_A 230 MMTDPARVRRSDP-GNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPH 308 (340)
T ss_dssp CCCCTTCSSTTSC-CCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCcccccccCC-CCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 9999998888886 89999999999999985 322 1 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 016437 357 YLDKVLADGAAKAADIADATLNNVYQAMGFL 387 (389)
Q Consensus 357 ~l~~iL~~Ga~kAr~~A~~tl~~v~~~~G~~ 387 (389)
||++||++|++|||++|++||++||++|||.
T Consensus 309 ~~~~il~~g~~~a~~~a~~t~~~v~~~~g~~ 339 (340)
T 2g36_A 309 YVDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999984
No 10
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=9e-65 Score=512.50 Aligned_cols=234 Identities=19% Similarity=0.287 Sum_probs=197.9
Q ss_pred CCCceEEEeecCCCcchhhhHHHHH-HHHHHHHc--cCcEEEEEeecccccCC--CCHHHHHHHHHHHHHHHHHcCCCCC
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 150 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai-~~~v~lQ~--~~~~~i~IaDlhAlt~~--~d~~~i~~~~~~~~a~~lA~GlDp~ 150 (389)
.++++||+|++|||.+|||||+|++ .+| ||+ +++++|+|||+||+++. .+++++++++++++++|+|||+||+
T Consensus 71 ~~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 148 (392)
T 3jxe_A 71 GRGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPD 148 (392)
T ss_dssp TCCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCcc
Confidence 4578999999999999999999996 789 776 68899999999999873 7999999999999999999999999
Q ss_pred CcEEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhc-CCcEEeecCcchHH
Q 016437 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQH 229 (389)
Q Consensus 151 k~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~-~adiVpvG~DQ~qh 229 (389)
|++||+||+|++|.++.|.|++.++++++.++.+|+ +++++|+|+||+|||||||+| ++|+||||.||+||
T Consensus 149 kt~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~h 220 (392)
T 3jxe_A 149 KTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPY 220 (392)
T ss_dssp SEEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHH
T ss_pred ceEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHH
Confidence 999999999999999999999999999999887663 468999999999999999999 69999999999999
Q ss_pred HHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhh
Q 016437 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (389)
Q Consensus 230 leLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~ 309 (389)
+++|||||+||| +++|.+++. ++||||+++++|||||++ +|+|+|+|+|++|++|||
T Consensus 221 l~l~Rdla~r~n------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~--ns~I~L~D~p~~I~kKI~ 277 (392)
T 3jxe_A 221 WRLQRDFAESLG------------------YYKTAALHS---KFVPSLTSLSGKMSASKP--ETAIYLTDSPEDVEKKVW 277 (392)
T ss_dssp HHHHHHHTGGGT------------------SCCCEEEEE---CCCCCSSCSSSCCCTTSG--GGCCBTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC------------------CCCCeeeec---ccccCCCCCccccccCCC--CCeeeCCCCHHHHHHHHH
Confidence 999999999999 456888876 689999544469999996 479999999999999999
Q ss_pred h-cccCCCCCcCcC--CCCCCchhHHHHHHHHhcCC
Q 016437 310 R-CKTDSSAGLEFD--NLERPECNNLLSIYQLISGK 342 (389)
Q Consensus 310 k-A~TD~~~~~~~~--~~~~p~~~nll~i~~~~~~~ 342 (389)
+ |+||+..++++. .+++|+++++++||.+|+..
T Consensus 278 k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~ 313 (392)
T 3jxe_A 278 KFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEE 313 (392)
T ss_dssp TCC--------------------CHHHHHHHHTTCC
T ss_pred hhccCCCCcccccccccCCCCchhHHHHHHHHHHcC
Confidence 9 999998876653 47899999999999999743
No 11
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=2.2e-62 Score=492.58 Aligned_cols=231 Identities=29% Similarity=0.378 Sum_probs=204.0
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHH-ccCcEEEEEeecccccCCC--CHHHHHHHHHHHHHHHHHcCCCCCCc
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-NSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKA 152 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ-~~~~~~i~IaDlhAlt~~~--d~~~i~~~~~~~~a~~lA~GlDp~k~ 152 (389)
.++++||||+||||.+|||||+|++ +|+.+| ++++++|+||||||+|++. +++.+++++++++++|+||||||+|+
T Consensus 68 gk~~~v~sG~~PTG~lHLGhyv~~~-~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt 146 (372)
T 3a04_A 68 GERVAVLTGFMPSGKFHFGHKLTVD-QLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDT 146 (372)
T ss_dssp TCCCEEEEEECCCSCCBHHHHHHHH-HHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTC
T ss_pred CCCCEEEeCcCCCcHhHHHHHHHHH-HHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHc
Confidence 4578999999999999999999876 555666 4899999999999999854 67789999999999999999999999
Q ss_pred EEEEcCC-chhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhh--------cCCcEEeec
Q 016437 153 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVG 223 (389)
Q Consensus 153 ~if~QS~-v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl--------~~adiVpvG 223 (389)
+||+||+ +++|.++.|.+++.+++++++++.+ ..+.|+++||+|||||||+ |++++||||
T Consensus 147 ~if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG 215 (372)
T 3a04_A 147 EFYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVG 215 (372)
T ss_dssp EEEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEE
T ss_pred chhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCccceecccc
Confidence 9999999 5789999999999999999987732 3578999999999999999 566699999
Q ss_pred CcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHH
Q 016437 224 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 303 (389)
Q Consensus 224 ~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~ 303 (389)
+||+||+|||||||+|||+.|+ ++.|..++. +.+||| || .|||||++ +|+|+|+|+|++
T Consensus 216 ~DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~---~~~pgl-dG-~KmS~S~~--ns~I~l~D~p~~ 274 (372)
T 3a04_A 216 ADQDPHLRLTRDLADRMAGVVE--------------LERPASTYH---KLQPGL-DG-RKMSSSRP--DSTIFLTDPPEV 274 (372)
T ss_dssp GGGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEE---CCCBCT-TS-SBCCTTSG--GGSCBTTCCHHH
T ss_pred hhhHHHHHHHHHHHHHhcCccc--------------ccChhhhhh---cccCCC-CC-CccCCCCC--CcccccCCCHHH
Confidence 9999999999999999999886 677888887 569999 78 69999996 699999999999
Q ss_pred HHHHhhhcccCCCCCcCc--CCCCCCchhHHHHHHHHh
Q 016437 304 IANKIKRCKTDSSAGLEF--DNLERPECNNLLSIYQLI 339 (389)
Q Consensus 304 I~kKI~kA~TD~~~~~~~--~~~~~p~~~nll~i~~~~ 339 (389)
|++|||+|+||+..+.+. ..|++|+++++++++.++
T Consensus 275 i~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~l~~ 312 (372)
T 3a04_A 275 ARNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMDLYH 312 (372)
T ss_dssp HHHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHHHHT
T ss_pred HHHHHhcCccCCCCCcccccccCCCCchhhHHHHHHHc
Confidence 999999999999877654 347899999999865443
No 12
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.8e-61 Score=483.29 Aligned_cols=233 Identities=22% Similarity=0.294 Sum_probs=206.6
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCC---CCHHHHHHHH-HHHH----HHHHHcCC
Q 016437 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACGI 147 (389)
Q Consensus 77 ~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~---~d~~~i~~~~-~~~~----a~~lA~Gl 147 (389)
++++||+||+|||.+|||||++++++|++||+ |++++|+||||||+|++ .+++++++++ ++++ ++|+|||+
T Consensus 32 ~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~ 111 (375)
T 2cyc_A 32 APLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGG 111 (375)
T ss_dssp CCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred CCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999999998 69999999999999985 3899999999 8898 99999999
Q ss_pred CCCCcEEEEcCCchhhhHHHHHH----hccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeec
Q 016437 148 DNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG 223 (389)
Q Consensus 148 Dp~k~~if~QS~v~eh~eL~w~L----~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG 223 (389)
||+|++||+||+|++|. ++|.+ ++.++++||.|+.+||++.. .+.+++|+|+||+||||||++|++|+||||
T Consensus 112 dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~~---~~~i~~g~f~YP~LQaaDil~~~~~~vp~G 187 (375)
T 2cyc_A 112 DPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQM---GEAIDFAKLIYPMMQVADIFYQGVTIAHAG 187 (375)
T ss_dssp CGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCCC---CTTCBTHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhcc---CCCCChHHHHHHHHHHHHHHHhCCCeeccc
Confidence 99999999999999998 89987 89999999999999987542 256899999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhhh---hh-cCccccccCCCCCccccCCccccCCCCcccccCCCC----------------CCc
Q 016437 224 EDQKQHLELTRELAERVNY---LY-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------------LSK 283 (389)
Q Consensus 224 ~DQ~qhleLtRdiA~rfN~---~y-g~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg----------------~~K 283 (389)
.||+||++++||+|+|||+ .| |. .| .|..+.. ++||||++| ++|
T Consensus 188 ~DQ~~~i~l~rdla~r~n~~~~~~~g~------------~~-~~~~~~~---~~l~gL~g~~~~~~~~~~~~~~~~~~~K 251 (375)
T 2cyc_A 188 MDQRKAHVIAIEVAQKLRYHPIVHEGE------------KL-KPVAVHH---HLLLGLQEPPKWPIESEEEFKEIKAQMK 251 (375)
T ss_dssp GGGHHHHHHHHHHGGGCSSSCEEETTE------------EE-CCEEEEE---CCCBCSSCCSSSSCCSHHHHHHHHHHHB
T ss_pred chHHHHHHHHHHHHHHhCCcccccccc------------cC-ccEEecc---ccccCCCCcccccccchhhhhhhhhhhc
Confidence 9999999999999999997 23 21 12 4554443 789999543 489
Q ss_pred CCCCCCCCCCcccCCCCHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhc
Q 016437 284 MSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS 340 (389)
Q Consensus 284 MSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~ 340 (389)
||||+| +|+|+|+|+|++|++|||+|+||+. +++.+++++|+++|+
T Consensus 252 MSKS~~--~~~I~L~d~p~~i~~KI~~A~t~~~---------~~~~~~v~~~~~~~~ 297 (375)
T 2cyc_A 252 MSKSKP--YSAVFIHDSPEEIRQKLRKAFCPAR---------EVRYNPVLDWVEYII 297 (375)
T ss_dssp GGGSCG--GGSCBTTCCHHHHHHHHHHSCCCTT---------CCSSCHHHHHHHHTT
T ss_pred ccCCCC--CCeeccCCCHHHHHHHHHHhcCCCC---------CCCCChHHHHHHHHh
Confidence 999996 4899999999999999999988763 456799999999886
No 13
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=8.8e-61 Score=477.13 Aligned_cols=272 Identities=20% Similarity=0.217 Sum_probs=213.2
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCC---CHHHHHHHHHHHHHHHHHcCCCCCCc
Q 016437 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSKA 152 (389)
Q Consensus 77 ~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~---d~~~i~~~~~~~~a~~lA~GlDp~k~ 152 (389)
+++++|+||+|||.+|||||++++.+|++||+ |++++|+|||+||+|++. +++++++++++++++|+|||+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~ 118 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGT 118 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccce
Confidence 47899999999999999999999999999998 699999999999999854 89999999999999999999999999
Q ss_pred EEEEcCCc-hhhhHHHHHHhc----cCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhc---CCcEEeecC
Q 016437 153 SVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVGE 224 (389)
Q Consensus 153 ~if~QS~v-~eh~eL~w~L~~----~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~---~adiVpvG~ 224 (389)
+||+||+| ++|. ++|.+.+ .+++++|.++.+++.+.. .+++++|+|+||+||||||++| ++|+||||.
T Consensus 119 ~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~~---~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G~ 194 (348)
T 2j5b_A 119 RFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRNE---SDCLKASQIFYPCMQAADVFELVPEGIDICQLGI 194 (348)
T ss_dssp EEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCBG
T ss_pred EEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhhc---cCCcChHHHhhHHHHHHHHHHHhcCCCcEEEecc
Confidence 99999998 6777 8998776 888888888888876532 2468999999999999999999 999999999
Q ss_pred cchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHH
Q 016437 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 304 (389)
Q Consensus 225 DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I 304 (389)
||+||+|++||+|+|||+.| |..+.. ++||||+||++|||||++ +|+|+|+|+|++|
T Consensus 195 DQ~~~i~l~Rdia~r~~~~~------------------p~~~~~---~~l~gL~dg~~KMSKS~~--~~~I~L~d~p~~i 251 (348)
T 2j5b_A 195 DQRKVNMLAIEYANDRGLKI------------------PISLSH---HMLMSLSGPKKKMSKSDP--QGAIFMDDTEQEV 251 (348)
T ss_dssp GGHHHHHHHHHHHHHTTCCC------------------CEEEEB---CCCCCTTCSSCCCSTTCG--GGSCBTTCCHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCC------------------ceeecC---ccccCCCCcccccccCCC--CCeEeecCCHHHH
Confidence 99999999999999999553 444333 789999888889999986 4899999999999
Q ss_pred HHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHh-------------cCCCHHHHHHHH-hcCHHHHHHHHHHHH----
Q 016437 305 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-------------SGKTKGVRYEEI-MSDSAYLDKVLADGA---- 366 (389)
Q Consensus 305 ~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~-------------~~~~~~~r~~~l-~~~~~~l~~iL~~Ga---- 366 (389)
++|||+|+||+. .++ +++++|++++ +.++.++-.+++ --.+..+.+.|.+--
T Consensus 252 ~kKI~ka~td~~---------~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~~~~~~~~K~~la~~l~~~l 321 (348)
T 2j5b_A 252 SEKISRAYCTDE---------TFD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRELKTDVANYINTII 321 (348)
T ss_dssp HHHHHHSCCCSS---------STT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCC---------CCC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHcccCHHHHHHHHHHHHHHHH
Confidence 999999988874 355 6788887763 345555322333 235666777666642
Q ss_pred H-----HHHHHHHHHHHHHHHHcC
Q 016437 367 A-----KAADIADATLNNVYQAMG 385 (389)
Q Consensus 367 ~-----kAr~~A~~tl~~v~~~~G 385 (389)
+ .++..|+++++.|++-+.
T Consensus 322 ~pir~~~~~~~~~~~~~~v~~~~~ 345 (348)
T 2j5b_A 322 DLVREHFKKPELSELLSNVKSYQQ 345 (348)
T ss_dssp HHHHHHTTSGGGHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhhHHHHHHHHHhcc
Confidence 1 122257778888887654
No 14
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=7e-60 Score=473.12 Aligned_cols=228 Identities=21% Similarity=0.309 Sum_probs=199.3
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCC---CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 016437 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (389)
Q Consensus 77 ~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~---~d~~~i~~~~~~~~a~~lA~GlDp~k~ 152 (389)
+++++|+||+|||.+|||| ++++.+|++||+ |++++|+||||||+|++ .+++.+++++++++++|+|||+||+|+
T Consensus 34 ~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~ 112 (364)
T 2cya_A 34 ARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERV 112 (364)
T ss_dssp SCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 4789999999999999999 888999999998 69999999999999985 799999999999999999999999999
Q ss_pred EEEEcCCchhhhHHHHH----HhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchH
Q 016437 153 SVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (389)
Q Consensus 153 ~if~QS~v~eh~eL~w~----L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~q 228 (389)
+||+||+|++| +++|. ++|.+++++|.|+.+||++... ...+++|+|+||+||||||++|++|+||||.||+|
T Consensus 113 ~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~--~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~ 189 (364)
T 2cya_A 113 RFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRAE--EAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRK 189 (364)
T ss_dssp EEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------CC--GGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHH
T ss_pred EEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhcC--CCCccchhhhhHHHHHhhHHhcCCCEEeccchHHH
Confidence 99999999988 67887 9999999999999999987542 23589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCC---------------CCCcCCCCCCCCCC
Q 016437 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKMSKSAPSDQS 293 (389)
Q Consensus 229 hleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~d---------------g~~KMSKS~~~~~s 293 (389)
|++++||||+||| ++.|..+.. ++||||++ |.+|||||++ +|
T Consensus 190 ~~~l~rdla~r~~------------------~~~p~~l~~---~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~--~~ 246 (364)
T 2cya_A 190 AHMLARDVAEKLG------------------RKKPVAIHT---PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP--ET 246 (364)
T ss_dssp HHHHHHHHHTTTT------------------CCCCEEEEE---CCCBCSSCC----------------CBCCSSSG--GG
T ss_pred HHHHHHHHHHHcC------------------CCCceeecc---ceeeCCCcccccccccccccccccccccCCCCC--CC
Confidence 9999999999999 334666554 78999954 3689999986 58
Q ss_pred cccCCCCHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhc
Q 016437 294 RINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS 340 (389)
Q Consensus 294 ~I~L~Dspe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~ 340 (389)
+|+|+|+|++|++|||+|+||+ ++++.+++++|+++|+
T Consensus 247 ~I~L~d~p~~i~~Ki~~a~td~---------~~~~~~~v~~~~~~~~ 284 (364)
T 2cya_A 247 AVFVVDSDDDIRRKIRKAYCPA---------KQVQGNPVLEIARYIL 284 (364)
T ss_dssp SCBTTCCHHHHHHHHHTSCCCT---------TCCTTCHHHHHHHHTT
T ss_pred EeeccCCHHHHHHHHHhCcCCC---------CCCCCCcHHHHHHHHh
Confidence 9999999999999999997776 3456788999999876
No 15
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=4.6e-60 Score=475.81 Aligned_cols=228 Identities=22% Similarity=0.287 Sum_probs=197.2
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCC---CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~---~d~~~i~~~~~~~~a~~lA~GlDp~k 151 (389)
.++++||+||+|||.+||||.+....+|++||+ |++++|+||||||++++ .+++++++++.+++++|+|+|+||+|
T Consensus 54 ~~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k 133 (373)
T 3vgj_A 54 KRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMEN 133 (373)
T ss_dssp CSSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTT
T ss_pred CCCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhh
Confidence 346899999999999999994322236889998 79999999999999973 58999999999999999999999999
Q ss_pred cEEEEcCCch-hhhHHHHHHhc----cCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcc
Q 016437 152 ASVFVQSHVR-AHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (389)
Q Consensus 152 ~~if~QS~v~-eh~eL~w~L~~----~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ 226 (389)
++||+||+|+ +|.+++|.+.+ .++++||.++.+|+.+.. .+++++|+|+||+||||||++|++|+||||.||
T Consensus 134 ~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~---~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ 210 (373)
T 3vgj_A 134 VQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSE---GEENYCSQILYPCMQCADIFFLNVDICQLGIDQ 210 (373)
T ss_dssp EEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCT---TSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGG
T ss_pred eEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhc---cCCCChHHHHHHHHHHhcccccCCcEEEcchhh
Confidence 9999999998 99999998765 689999999998875432 156899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHH
Q 016437 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (389)
Q Consensus 227 ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~k 306 (389)
+||++++||+|+|||+.|+ |..+.. ++||||+||++|||||++ +|+|+|+|+|++|++
T Consensus 211 ~~~l~l~Rdla~r~~~~~~-----------------~~~l~~---p~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~~ 268 (373)
T 3vgj_A 211 RKVNMLAREYCDIKKIKKK-----------------PVILSH---GMLPGLLEGQEKMSKSDE--NSAIFMDDSESDVNR 268 (373)
T ss_dssp HHHHHHHHHHHHHHTCSCC-----------------CEEEEB---CCCCCSSTTCCSCCSSST--TCCCBTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCC-----------------ceEEeC---CeeecCCCCCCCCcCCCC--CCeeecCCCHHHHHH
Confidence 9999999999999997653 433443 689999899889999986 589999999999999
Q ss_pred HhhhcccCCCCCcCcCCCCCCchhHHHHHHH
Q 016437 307 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQ 337 (389)
Q Consensus 307 KI~kA~TD~~~~~~~~~~~~p~~~nll~i~~ 337 (389)
|||+|+||+. +++.|+++++++
T Consensus 269 KI~kA~td~~---------~~~~n~~~~~~~ 290 (373)
T 3vgj_A 269 KIKKAYCPPN---------VIENNPIYAYAK 290 (373)
T ss_dssp HHHHSCCCTT---------CCTTCHHHHHHH
T ss_pred HHHhCcCCCC---------CCCCCcchhhhh
Confidence 9999988763 345566666554
No 16
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.7e-58 Score=468.45 Aligned_cols=256 Identities=18% Similarity=0.194 Sum_probs=213.5
Q ss_pred CCCceEEEeecCCC-cchhhhHHHH-HHHHHHHHc--cCcEEEEEeecccccC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 016437 76 SVKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (389)
Q Consensus 76 ~~~~~i~sGiqPTG-~lHLGnylga-i~~~v~lQ~--~~~~~i~IaDlhAlt~-~~d~~~i~~~~~~~~a~~lA~GlDp~ 150 (389)
.++++||+|++||| .+|||||+|+ +.+| ||+ ++.++|+|||+||+++ +.+++++++++++++++|+|||+||+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 176 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPK 176 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 45789999999999 7999999998 4788 887 5778889999999865 67999999999999999999999999
Q ss_pred CcEEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhh--------hhcCCcEEe
Q 016437 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDI--------LLYQSDFVP 221 (389)
Q Consensus 151 k~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADI--------Ll~~adiVp 221 (389)
|++||.||+|++ .++.++++|.|+++||++.+..+ .+++++|+|+||+|||||+ +.|++|+||
T Consensus 177 k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvp 248 (406)
T 3tze_A 177 LTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVP 248 (406)
T ss_dssp GEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEE
T ss_pred ceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEe
Confidence 999999999976 34567889999999999988765 3578999999999999995 457899999
Q ss_pred ecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCC-CcCCCCCCCCCCcccCCCC
Q 016437 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRINLLDP 300 (389)
Q Consensus 222 vG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~-~KMSKS~~~~~s~I~L~Ds 300 (389)
||.||+||++++||||+||| +++|..+.. ++|||| ||. +|||||++ +|+|+|+|+
T Consensus 249 vG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--~~~I~L~D~ 304 (406)
T 3tze_A 249 AAVDQDPFFRLARDKAKALG------------------EKKPSSIYV---SLLPDL-KGVNRKMSASDP--NSSIYLDDA 304 (406)
T ss_dssp EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TSCCCCSSCSCG--GGSCBTTCC
T ss_pred eccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCcccCCCC
Confidence 99999999999999999999 556777754 789999 675 69999986 599999999
Q ss_pred HHHHHHHhhh-cccCCCCCcCc--CCCCCCchhHHHHHHHHhcCC--CHHHHHHHHhc---CHHHHHHHHHHH
Q 016437 301 KDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLISGK--TKGVRYEEIMS---DSAYLDKVLADG 365 (389)
Q Consensus 301 pe~I~kKI~k-A~TD~~~~~~~--~~~~~p~~~nll~i~~~~~~~--~~~~r~~~l~~---~~~~l~~iL~~G 365 (389)
|++|++|||+ |+||+..++++ +++++|+++|+++||++|+.. +.++-.+++.+ .+..+.+.|.+-
T Consensus 305 p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~ 377 (406)
T 3tze_A 305 QDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVV 377 (406)
T ss_dssp HHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999 99999988776 568999999999999999842 22233334432 455555555443
No 17
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=1.3e-60 Score=487.70 Aligned_cols=272 Identities=15% Similarity=0.217 Sum_probs=220.9
Q ss_pred CCCceEEEeecCC-CcchhhhHHHHH-HHHHHHHc--cCcEEEEEeecccccCC--CCHHHHHHHHHHHHHHHHHcCCCC
Q 016437 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDN 149 (389)
Q Consensus 76 ~~~~~i~sGiqPT-G~lHLGnylgai-~~~v~lQ~--~~~~~i~IaDlhAlt~~--~d~~~i~~~~~~~~a~~lA~GlDp 149 (389)
.+++++|+||+|| |.||||||++++ .+| ||+ ++.++|+|||+||++.+ .+++.+++++++++++|+|||+||
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~~l~~--lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp 177 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFVFTKW--LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDP 177 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHHHHHH--HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 3478999999999 899999999987 577 776 68899999999998872 589999999999999999999999
Q ss_pred CCcEEEEcCCch--hhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhhhh-----------c
Q 016437 150 SKASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 215 (389)
Q Consensus 150 ~k~~if~QS~v~--eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADILl-----------~ 215 (389)
+|++||+||+|+ +|.++.| +++||++++++.+..+ .+++++|+|+||+|||||||+ |
T Consensus 178 ~k~~i~~nSd~~~~~~~~~~~---------~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~ 248 (432)
T 2ip1_A 178 KNTFIFSDLQYMGGAFYETVV---------RVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDK 248 (432)
T ss_dssp GGEEEEEHHHHCSHHHHHHHH---------HHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTT
T ss_pred CceEEEeCchhhhhhHHHHHH---------HHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCC
Confidence 999999999997 6777777 3679999998877653 457899999999999999999 6
Q ss_pred CCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcc
Q 016437 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (389)
Q Consensus 216 ~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I 295 (389)
++++||||.||++|++++||||+||| |++|..+.. ++||||+++++|||||++ +++|
T Consensus 249 ~~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~ll~gLdG~~~KMSKS~~--nsaI 305 (432)
T 2ip1_A 249 TPCLIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHS---RFFPALQGSTTKMSASDD--TTAI 305 (432)
T ss_dssp CCEEEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEE---CCCCCTTC--------CG--GGCC
T ss_pred CceEEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecc---ccccCCCCCccccCCCCC--CCeE
Confidence 79999999999999999999999999 456877654 789999443479999985 3599
Q ss_pred cCCCCHHHHHHHhhh-cccCCCCCcCcC--CCCCCchhHHHHHHHHhcCC--CHH-------------------------
Q 016437 296 NLLDPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLISGK--TKG------------------------- 345 (389)
Q Consensus 296 ~L~Dspe~I~kKI~k-A~TD~~~~~~~~--~~~~p~~~nll~i~~~~~~~--~~~------------------------- 345 (389)
+|+|+|++|++|||+ |+||+..+.++. ++++|++++++.|+++|+-. +.+
T Consensus 306 ~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~~K~~La~~i~ 385 (432)
T 2ip1_A 306 FMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQ 385 (432)
T ss_dssp BTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999 999996543322 35889999999999988521 111
Q ss_pred -------HHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016437 346 -------VRYEEIMSD----SAYLDKVLADGAAKAADIADATLNNVY 381 (389)
Q Consensus 346 -------~r~~~l~~~----~~~l~~iL~~Ga~kAr~~A~~tl~~v~ 381 (389)
+||+++++| +.++++|+.+|++|||++|.+||++|+
T Consensus 386 ~~l~~~rer~~~~~~~~~~~~~~~~~~~~~g~~~a~~~a~~t~~~v~ 432 (432)
T 2ip1_A 386 EFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432 (432)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHSCCCCCCSCSCCSSCCC--------
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999888 888999999999999999999999986
No 18
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.1e-58 Score=496.25 Aligned_cols=238 Identities=22% Similarity=0.334 Sum_probs=201.4
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC---CCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL---PYDTQQLSKATRETAAIYLACGIDNSK 151 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~---~~d~~~i~~~~~~~~a~~lA~GlDp~k 151 (389)
.++++||+||+|||.+||||++....+|++||+ +++++|+||||||+|+ ..+++++++++++++++|+|||+||+|
T Consensus 38 ~~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 117 (690)
T 3p0j_A 38 KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDK 117 (690)
T ss_dssp CTTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHH
Confidence 347899999999999999995432236889998 7899999999999997 368999999999999999999999999
Q ss_pred cEEEEcCC-chhhhHHHHHHhc----cCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcc
Q 016437 152 ASVFVQSH-VRAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (389)
Q Consensus 152 ~~if~QS~-v~eh~eL~w~L~~----~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ 226 (389)
++||+||+ +++|++++|.+.+ .++++||.|+.+|+.+.. +++++|+|+||+||||||++|++|+||||.||
T Consensus 118 ~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~----~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ 193 (690)
T 3p0j_A 118 VLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTE----GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQ 193 (690)
T ss_dssp EEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGG
T ss_pred eEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhcc----CCCchhhHhhHHHHHHHHHhhCCCEEeccccH
Confidence 99999998 6899999998754 799999999999987542 23899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHH
Q 016437 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (389)
Q Consensus 227 ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~k 306 (389)
+||++++||||+|||+.|+ |..+.. ++||||+||++|||||++ +|+|+|+|+|++|++
T Consensus 194 ~~~l~l~Rdla~r~n~~~~-----------------p~~l~~---~~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~k 251 (690)
T 3p0j_A 194 RKVNMLAREYCDLIGRKLK-----------------PVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVAR 251 (690)
T ss_dssp HHHHHHHHHHHHHTTCCCC-----------------CEEEEB---CCCCCSSTTCSSCBTTBG--GGSCBTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCC-----------------ceEeec---CeeecCCCCCcCCCCCCC--CCeeeccCCHHHHHH
Confidence 9999999999999997653 333333 689999899889999986 489999999999999
Q ss_pred HhhhcccCCCCCcC---cCCCCC---CchhHHHHHHHHh
Q 016437 307 KIKRCKTDSSAGLE---FDNLER---PECNNLLSIYQLI 339 (389)
Q Consensus 307 KI~kA~TD~~~~~~---~~~~~~---p~~~nll~i~~~~ 339 (389)
|||+|+||+.+... .++++. +++|++++|+++|
T Consensus 252 KI~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~ 290 (690)
T 3p0j_A 252 KIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCV 290 (690)
T ss_dssp HHHTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHT
T ss_pred HHHhCcCCCcccccccccCCCCcccCCCCchHHHHHHHh
Confidence 99999999876321 233222 5899999999987
No 19
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=7.2e-58 Score=461.36 Aligned_cols=231 Identities=16% Similarity=0.192 Sum_probs=203.3
Q ss_pred CCCceEEEeecCCCcchhhhHHHH-HHHHHHHHc--cCcEEEEEeecccccCC-CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylga-i~~~v~lQ~--~~~~~i~IaDlhAlt~~-~d~~~i~~~~~~~~a~~lA~GlDp~k 151 (389)
.++++||+||+|||.+|||||+|+ +.+| ||+ ++.++|+|+|+|++++. .+++++++++++++++|+|||+||+|
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~k 157 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDK 157 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGG
T ss_pred CCCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 457899999999999999999999 5789 887 56788899999999884 79999999999999999999999999
Q ss_pred cEEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhhh--------hcC-CcEEe
Q 016437 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQ-SDFVP 221 (389)
Q Consensus 152 ~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADIL--------l~~-adiVp 221 (389)
++||+||+|++ .|+.++++|.|+++||++.+..+ .+++++|+|+||+||||||+ .|+ +|+||
T Consensus 158 t~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~Vp 229 (386)
T 3hzr_A 158 TFIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVL 229 (386)
T ss_dssp EEEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEE
T ss_pred eEEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCccccc
Confidence 99999999976 56678899999999999987665 45799999999999999766 466 99999
Q ss_pred ecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCH
Q 016437 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 301 (389)
Q Consensus 222 vG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dsp 301 (389)
||+||+||+++|||||+||| +++|..+.. ++|||| ||.+|||||++ +|+|+|+|+|
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~---~~l~gL-dG~~KMSKSd~--~~~I~L~D~p 285 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLN------------------FIQPTVLFH---KMVPLL-SGVTKFDIPSD--HNSILLSDNA 285 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TCTTCCCCCCT--TTSCBTTCCH
T ss_pred cccchHHHHHHHHHHHHHcC------------------CCCceEeec---CeeeCC-CCCCccCcCCC--CCeeecCCCH
Confidence 99999999999999999999 445744432 789999 67569999986 6999999999
Q ss_pred HHHHHHhhh-cccCCCCCcC--cCCCCCCchhHHHHHHHHhc
Q 016437 302 DVIANKIKR-CKTDSSAGLE--FDNLERPECNNLLSIYQLIS 340 (389)
Q Consensus 302 e~I~kKI~k-A~TD~~~~~~--~~~~~~p~~~nll~i~~~~~ 340 (389)
++|++|||+ |+||+..+.+ ...+++|+++++++||++|+
T Consensus 286 ~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~ 327 (386)
T 3hzr_A 286 KQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFS 327 (386)
T ss_dssp HHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHC
T ss_pred HHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHc
Confidence 999999999 9998876532 23578999999999999997
No 20
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=3.3e-56 Score=439.49 Aligned_cols=225 Identities=25% Similarity=0.381 Sum_probs=201.6
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKAS 153 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~-d~~~i~~~~~~~~a~~lA~GlDp~k~~ 153 (389)
.++++||+||+|||.+||||+ +++.+|+++|+ +++++|+||||||+|++. +++++++++++++++|+|+|+||+|++
T Consensus 30 ~~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~ 108 (323)
T 2cyb_A 30 KEKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAK 108 (323)
T ss_dssp CSCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCE
T ss_pred CCCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 346899999999999999985 77899999998 799999999999999865 999999999999999999999999999
Q ss_pred EEEcCCch---hhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHH
Q 016437 154 VFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (389)
Q Consensus 154 if~QS~v~---eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhl 230 (389)
||+||+|+ +|.++.|.++|.+++++|.|+.+++.+. .+..++|+|+||+||||||++|++|+||||.||++|+
T Consensus 109 i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~----~~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~ 184 (323)
T 2cyb_A 109 FVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRR----KEDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIH 184 (323)
T ss_dssp EEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSC----SSSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred EEEcchhccchHHHHHHHHHhCccCHHHHhccchhhccc----cCCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHH
Confidence 99999996 8999999999999999999987765321 1345999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhh
Q 016437 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (389)
Q Consensus 231 eLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~k 310 (389)
+++|+||++||+ +.|..++. ++||+| +| +|||||. +|+|+|+|+|++|++||++
T Consensus 185 ~l~rdla~~~~~------------------~~p~~l~~---pll~~l-~G-~KMSKS~---~n~I~l~d~p~~i~~Ki~~ 238 (323)
T 2cyb_A 185 MLARENLPRLGY------------------SSPVCLHT---PILVGL-DG-QKMSSSK---GNYISVRDPPEEVERKIRK 238 (323)
T ss_dssp HHHHHHGGGGTC------------------CCCEEEEE---CCCBCT-TS-SBCCTTT---TCSCBTTCCHHHHHHHHHT
T ss_pred HHHHHHHHhcCC------------------CCceEEec---CcccCC-CC-CcccCCc---CceeCCCCCHHHHHHHHHh
Confidence 999999999983 34666665 679999 67 7999994 6999999999999999999
Q ss_pred cccCCCCCcCcCCCCCCchhHHHHHHHHhc
Q 016437 311 CKTDSSAGLEFDNLERPECNNLLSIYQLIS 340 (389)
Q Consensus 311 A~TD~~~~~~~~~~~~p~~~nll~i~~~~~ 340 (389)
|+||+. .++.+++++|+++|.
T Consensus 239 a~td~~---------~~~~~~~~~~~~~~~ 259 (323)
T 2cyb_A 239 AYCPAG---------VVEENPILDIAKYHI 259 (323)
T ss_dssp SCCCTT---------CCTTCHHHHHHHHTH
T ss_pred cCCCCC---------CCCcChHHHHHHHHh
Confidence 988874 445699999999984
No 21
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3.8e-56 Score=455.54 Aligned_cols=232 Identities=24% Similarity=0.312 Sum_probs=202.1
Q ss_pred CCCceEEEeecCC-CcchhhhHHHHH-HHHHHHHc--cCcEEEEEeecccccC--CCCHHHHHHHHHHHHHHHHHcCCCC
Q 016437 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDN 149 (389)
Q Consensus 76 ~~~~~i~sGiqPT-G~lHLGnylgai-~~~v~lQ~--~~~~~i~IaDlhAlt~--~~d~~~i~~~~~~~~a~~lA~GlDp 149 (389)
.++.++|+||+|| |.||||||++++ .+| ||+ ++.++|+|+|+|++++ ..+++++++++++++++|+||||||
T Consensus 89 g~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDp 166 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDP 166 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred CCCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 3578999999999 889999999998 788 787 5668889999999986 3699999999999999999999999
Q ss_pred CCcEEEEcCCchh---hhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhh-------------
Q 016437 150 SKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDIL------------- 213 (389)
Q Consensus 150 ~k~~if~QS~v~e---h~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADIL------------- 213 (389)
+|++||+||+|++ +.++.|.|++.++++++.+...|+ +++++|+|+||+||||||+
T Consensus 167 ekt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f~--------~~is~gef~YPlLQAaDil~~~~d~~~~~~vp 238 (451)
T 3foc_A 167 DKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFS--------NDANVGYAAFPPKQMLPVYSTYFDGLPFTRVP 238 (451)
T ss_dssp GGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCCC--------SSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCB
T ss_pred CceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhcccC--------CCCchHHHhhHHHHHHHHHHhhcCCCCccccc
Confidence 9999999999965 677778888888888887775542 5689999999999999998
Q ss_pred -----------------------------hcCCc-----------------EEeecCcchHHHHHHHHHHHHhhhhhcCc
Q 016437 214 -----------------------------LYQSD-----------------FVPVGEDQKQHLELTRELAERVNYLYGGR 247 (389)
Q Consensus 214 -----------------------------l~~ad-----------------iVpvG~DQ~qhleLtRdiA~rfN~~yg~~ 247 (389)
+|++| +||||+||+||+|+|||||+|||
T Consensus 239 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn------ 312 (451)
T 3foc_A 239 LPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMG------ 312 (451)
T ss_dssp CC-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTT------
T ss_pred cccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhC------
Confidence 34444 99999999999999999999999
Q ss_pred cccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhh-cccCCCCCcCc--CCC
Q 016437 248 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR-CKTDSSAGLEF--DNL 324 (389)
Q Consensus 248 ~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~k-A~TD~~~~~~~--~~~ 324 (389)
+++|..+.. ++||||+++++|||||++ +|+|+|+|+|++|++|||+ |+||+..++++ .++
T Consensus 313 ------------~~~p~~~~~---~~l~gLdG~~~KMSKS~~--ns~I~l~D~p~~I~kKI~k~A~Td~~~~~~~~~~~~ 375 (451)
T 3foc_A 313 ------------HPKNAYLLG---KFLPGLQGSGTKMSASDP--NSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFG 375 (451)
T ss_dssp ------------SCCCEEEEE---CCCCBTTBTTCCCCTTCG--GGSCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHTTC
T ss_pred ------------CCCCeeecC---CcccCCCCCCCccCCCCC--CCeeeecCCHHHHHHHHhhhccCCCCccchhcccCC
Confidence 445665543 789999544579999996 4799999999999999999 99999887654 678
Q ss_pred CCCchhHHHHHHHHhc
Q 016437 325 ERPECNNLLSIYQLIS 340 (389)
Q Consensus 325 ~~p~~~nll~i~~~~~ 340 (389)
++|+++|++.||++|+
T Consensus 376 g~p~~~~v~~~l~~f~ 391 (451)
T 3foc_A 376 ADLSVDVSVRYLEVFM 391 (451)
T ss_dssp CCTTTCHHHHHHHHHC
T ss_pred CCcchhhHHHHHHHHc
Confidence 9999999999999997
No 22
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=2.1e-55 Score=444.47 Aligned_cols=231 Identities=20% Similarity=0.267 Sum_probs=190.7
Q ss_pred CCCceEEEeecCC-CcchhhhHHHHH-HHHHHHHc--cCcEEEEEeecccccC--CCCHHHHHHHHHHHHHHHHHcCCCC
Q 016437 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDN 149 (389)
Q Consensus 76 ~~~~~i~sGiqPT-G~lHLGnylgai-~~~v~lQ~--~~~~~i~IaDlhAlt~--~~d~~~i~~~~~~~~a~~lA~GlDp 149 (389)
.+++++|+|++|| |.||||||++++ .+| ||+ ++.++|+|||+|+..+ ..+++++++++++++++|+|+|+||
T Consensus 72 g~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp 149 (393)
T 3hv0_A 72 GELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDP 149 (393)
T ss_dssp TCCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 3468999999999 689999999998 678 887 4678999999999654 5799999999999999999999999
Q ss_pred CCcEEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhhh-------hc-C---C
Q 016437 150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL-------LY-Q---S 217 (389)
Q Consensus 150 ~k~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADIL-------l~-~---a 217 (389)
+|++||.||+|++ .++..+.||.|+++++++.+..+ .+++++|+|+||+||||||+ ++ + +
T Consensus 150 ~kt~i~~ns~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~ 221 (393)
T 3hv0_A 150 ELTFIFTNLEYIA--------ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIH 221 (393)
T ss_dssp TTEEEEEHHHHHH--------HHHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCC
T ss_pred cceEEEECCHHHH--------HHHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCc
Confidence 9999999999965 12345678899999999887765 46799999999999999996 33 3 4
Q ss_pred cEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCC-CCcCCCCCCCCCCccc
Q 016437 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKMSKSAPSDQSRIN 296 (389)
Q Consensus 218 diVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg-~~KMSKS~~~~~s~I~ 296 (389)
++||||.||++|++++||+|+||| +++|..+.. ++|||| || ++|||||++ +|+|+
T Consensus 222 ~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--nsaI~ 277 (393)
T 3hv0_A 222 CLVPHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHS---IFLPSL-QGSQTKMSASVQ--NSSIF 277 (393)
T ss_dssp EEEEEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEE---CCCCC----------------CCCCB
T ss_pred eecccccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCeEe
Confidence 789999999999999999999998 556776654 789999 55 479999996 47999
Q ss_pred CCCCHHHHHHHhhh-cccCCCCCcCcC--CCCCCchhHHHHHHHHhc
Q 016437 297 LLDPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS 340 (389)
Q Consensus 297 L~Dspe~I~kKI~k-A~TD~~~~~~~~--~~~~p~~~nll~i~~~~~ 340 (389)
|+|+|++|++|||+ |+||+..++++. .|++|+++++++||++|+
T Consensus 278 L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~ 324 (393)
T 3hv0_A 278 VNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLM 324 (393)
T ss_dssp TTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHc
Confidence 99999999999999 999999888764 489999999999999996
No 23
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=1.6e-55 Score=445.46 Aligned_cols=231 Identities=17% Similarity=0.229 Sum_probs=176.1
Q ss_pred CCCceEEEeecCCC-cchhhhHHHHH-HHHHHHHc--cCcEEEEEeecccccC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 016437 76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (389)
Q Consensus 76 ~~~~~i~sGiqPTG-~lHLGnylgai-~~~v~lQ~--~~~~~i~IaDlhAlt~-~~d~~~i~~~~~~~~a~~lA~GlDp~ 150 (389)
.+++++|+|++||| .||||||++++ .+| ||+ ++.++|+|+|+|+.++ +.+++++++++++++++|+|||+||+
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 153 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPE 153 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 45789999999999 69999999984 678 887 5678888999976654 78999999999999999999999999
Q ss_pred CcEEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhh--------hhhhcC----C
Q 016437 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----S 217 (389)
Q Consensus 151 k~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAA--------DILl~~----a 217 (389)
|++||.||+|++ .| +..+.+|.|+++|+++.+..+ .+++++|+|+||+|||| ||++|+ +
T Consensus 154 kt~i~~ns~~~~----~~----~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~ 225 (395)
T 3i05_A 154 LTFIFRDFDYMG----CM----YRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVF 225 (395)
T ss_dssp SEEEEEHHHHTT----TS----HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCE
T ss_pred ceEEEEcCHHHH----HH----HHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCc
Confidence 999999999975 12 245778999999999988765 45789999999999999 677898 9
Q ss_pred cEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccC
Q 016437 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (389)
Q Consensus 218 diVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L 297 (389)
|+||||.||+||++++||||+||| +++|..+.. ++||||+++++||||| + +|+|+|
T Consensus 226 ~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS-~--~~~I~L 281 (395)
T 3i05_A 226 CLIPQAIDQDPYFRLTRDIAPRLG------------------YLKPAVIHS---KFFPGLSGPKGKMSSS-S--GTAVLL 281 (395)
T ss_dssp EEEEEEGGGHHHHHHHHHTHHHHT------------------CCCCEEEEE---CCCCCC----------------CCBT
T ss_pred eEEEeccchHHHHHHHHHHHHHcC------------------CCCceeecc---ccccCCCCCcccCCCC-C--CCcccC
Confidence 999999999999999999999999 344666544 7899994334799999 3 799999
Q ss_pred CCCHHHHHHHhhh-cccCCCCCcCc--CCCCCCchhHHHHHHHHhc
Q 016437 298 LDPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS 340 (389)
Q Consensus 298 ~Dspe~I~kKI~k-A~TD~~~~~~~--~~~~~p~~~nll~i~~~~~ 340 (389)
+|+|++|++|||+ |+||+..++++ +++++|+++|+++||++|+
T Consensus 282 ~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~ 327 (395)
T 3i05_A 282 TDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFL 327 (395)
T ss_dssp TCCHHHHHHHHC----------------------CCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHc
Confidence 9999999999999 99999877654 6789999999999999996
No 24
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=1.6e-55 Score=435.03 Aligned_cols=207 Identities=14% Similarity=0.156 Sum_probs=184.7
Q ss_pred CCceEEEeecCCCc-chhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-CC---------CHHHHHHHH---HHHHHH
Q 016437 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAAI 141 (389)
Q Consensus 77 ~~~~i~sGiqPTG~-lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~~---------d~~~i~~~~---~~~~a~ 141 (389)
++++||+||+|||. +|||||++ +.+|++||+ +++++|+|||+||+|+ +. +++++++++ ++.++.
T Consensus 32 ~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~ 110 (322)
T 2yxn_A 32 GPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAP 110 (322)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999 99999995 789999998 6999999999999998 43 899999999 888999
Q ss_pred HHHcCCCCCCcEEEEcCCchh-hhHHHHH--HhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhc---
Q 016437 142 YLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (389)
Q Consensus 142 ~lA~GlDp~k~~if~QS~v~e-h~eL~w~--L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~--- 215 (389)
|+|||+||+|++||.||+|+. +.++.|+ ++|.+++++|.|+.+||++.... .+++++|+|+||+||||||++|
T Consensus 111 ~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~-~~~is~g~f~YP~LQaaDil~l~~~ 189 (322)
T 2yxn_A 111 FLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE-DQGISFTEFSYNLLQGYDFACLNKQ 189 (322)
T ss_dssp GSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT-TCCCCHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC-CCCccchhhhHHHHHHHHHHHHhcc
Confidence 999999999999999999976 4888888 89999999999999999876521 2568999999999999999999
Q ss_pred -CCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCc
Q 016437 216 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (389)
Q Consensus 216 -~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~ 294 (389)
++|+++||.||+||++++||||+|||+ + .|..+.. ++|||+ || +|||||++ |+
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~gl-dG-~KMSKS~~---n~ 243 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRRLHQ--N----------------QVFGLTV---PLITKA-DG-TKFGKTEG---GA 243 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHC--C----------------CCEEEEC---CCCBCT-TS-CBTTEETT---EE
T ss_pred CCceEEecCchhHHHHHHHHHHHHHhCC--C----------------Cceeecc---CccCCC-Cc-ccccCCCC---Ce
Confidence 999999999999999999999999994 2 1333433 679998 78 69999984 69
Q ss_pred ccCCC---CHHHHHHHhhhc
Q 016437 295 INLLD---PKDVIANKIKRC 311 (389)
Q Consensus 295 I~L~D---spe~I~kKI~kA 311 (389)
|+|+| +|+++++||+++
T Consensus 244 I~L~d~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 244 VWLDPKKTSPYKFYQFWINT 263 (322)
T ss_dssp CBSSTTTSCHHHHHHHHHTC
T ss_pred eeccCCCCCHHHHHHHHhCC
Confidence 99999 999999999997
No 25
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=3.3e-54 Score=424.31 Aligned_cols=218 Identities=25% Similarity=0.312 Sum_probs=191.8
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCC-CCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 016437 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS 153 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~-~d~~~i~~~~~~~~a~~lA~GlDp~k~~ 153 (389)
.++++||+||+|||.+|||| ++++.+|+.||+ +++++|+|||+||++++ .+++++++++.+++++|+|||+| ++
T Consensus 26 ~~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~ 101 (314)
T 2zp1_A 26 KDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AK 101 (314)
T ss_dssp SSSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CE
T ss_pred CCCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eE
Confidence 34789999999999999999 888999999998 69999999999999985 48999999999999999999998 78
Q ss_pred EEEcCCchhhhHHHHH----HhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHH
Q 016437 154 VFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (389)
Q Consensus 154 if~QS~v~eh~eL~w~----L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qh 229 (389)
|++||+|+++ +++|. ++|.+++++|.|+.+||++. . +..++|+|+||+||||||++|++|+||||+||++|
T Consensus 102 ~~~qs~~~~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~---~-~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~ 176 (314)
T 2zp1_A 102 YVYGSEFQLD-KDYTLNVYRLALKTTLKRARRSMELIARE---D-ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKI 176 (314)
T ss_dssp EEEGGGTTTS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCC---C-SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred EEECChhhcc-hHHHHHHHHHHCcCcHHHHhccchhhhhc---c-CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHH
Confidence 9999999866 45555 99999999999999998753 1 22499999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhh
Q 016437 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (389)
Q Consensus 230 leLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~ 309 (389)
++|+|++++ . .|..+.. ++|||| ||++||||| + +|+|+|+|+|++|++|||
T Consensus 177 ~~l~R~i~~--~--------------------~~~~~~~---~~l~~l-~G~~KMSKS-~--~~~I~L~d~~~~i~~KI~ 227 (314)
T 2zp1_A 177 HMLARELLP--K--------------------KVVCIHN---PVLTGL-DGEGKMSSS-K--GNFIAVDDSPEEIRAKIK 227 (314)
T ss_dssp HHHHHHHSS--S--------------------CCEEEEE---CCCBCT-TSSSBCCTT-T--TCSCBTTCCHHHHHHHHH
T ss_pred HHHHHHhcC--C--------------------CcEEeec---cccccC-CcccccCCC-C--cceecCCCCHHHHHHHHH
Confidence 999999875 0 1444443 789999 587899999 3 689999999999999999
Q ss_pred hcccCCCCCcCcCCCCCCchhHHHHHHHHhc
Q 016437 310 RCKTDSSAGLEFDNLERPECNNLLSIYQLIS 340 (389)
Q Consensus 310 kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~ 340 (389)
+|+||+. .++.+++++||++|.
T Consensus 228 ~a~td~~---------~~~~~~~~~~~~~~~ 249 (314)
T 2zp1_A 228 KAYCPAG---------VVEGNPIMEIAKYFL 249 (314)
T ss_dssp HSCCCTT---------CCTTCHHHHHHHHHC
T ss_pred hCCCCCC---------CCCCCcHHHHHHHHh
Confidence 9988874 345799999999985
No 26
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=8.8e-55 Score=444.63 Aligned_cols=258 Identities=19% Similarity=0.242 Sum_probs=208.0
Q ss_pred CCCceEEEeecCCCc-chhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-C---------CCHHHHHHHHHHHHHHHH
Q 016437 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (389)
Q Consensus 76 ~~~~~i~sGiqPTG~-lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~---------~d~~~i~~~~~~~~a~~l 143 (389)
.++++||+||+|||. +|||||+ .+.+|++||+ |++++|+|||+||+|+ + .+++++++|+.++.+++.
T Consensus 35 ~~~~~vy~G~dPTg~sLHlGh~v-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~ 113 (432)
T 1h3f_A 35 GRPLTVKLGADPTRPDLHLGHAV-VLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG 113 (432)
T ss_dssp CSCCEEEEEECTTCCSCBHHHHH-HHHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT
T ss_pred CCCcEEEEcccCCCCCCchhhHH-HHHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH
Confidence 357899999999996 9999999 5889999998 7999999999999997 3 247888888877776655
Q ss_pred HcCCC--CCCcEEEEcCCchhhhHHHHHH--hccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcE
Q 016437 144 ACGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 219 (389)
Q Consensus 144 A~GlD--p~k~~if~QS~v~eh~eL~w~L--~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adi 219 (389)
+||| |+|++||+||+|+++..+.|++ ++.+++++|.+..+||++... .+++++|+|+||+||||||++|++|+
T Consensus 114 -~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l 190 (432)
T 1h3f_A 114 -KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADV 190 (432)
T ss_dssp -TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSE
T ss_pred -HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccE
Confidence 8999 9999999999999888788876 899999999888899988753 25789999999999999999999999
Q ss_pred EeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC
Q 016437 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (389)
Q Consensus 220 VpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D 299 (389)
||||.||++|++++||||+|||.. .|..+.. ++|||+ ||++|||||+ +|+|+|+|
T Consensus 191 ~~gG~DQ~~ni~l~rdlarr~~~~------------------~~~~lt~---pll~gl-dG~~KMSKS~---~n~I~L~d 245 (432)
T 1h3f_A 191 EMGGTDQRFNLLVGREVQRAYGQS------------------PQVCFLM---PLLVGL-DGREKMSKSL---DNYIGLTE 245 (432)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTTCC------------------CCEEEEE---CCCBCT-TSSSBCCGGG---TCCCBTTS
T ss_pred EEechHHHHHHHHHHHHHHHhCCC------------------CceEeec---ccccCC-CCccccCcCC---CCeeCCCC
Confidence 999999999999999999999832 1223332 679998 8877999998 46999999
Q ss_pred CHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCHH---------------------------------H
Q 016437 300 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG---------------------------------V 346 (389)
Q Consensus 300 spe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~---------------------------------~ 346 (389)
+|++|++||+++.+ ++++.||++|++.+.+ +
T Consensus 246 sp~~i~~Ki~~~~d----------------~~v~~~l~~ft~~~~eei~~~~~~~~~~~K~~LA~~i~~~l~~~~~pire 309 (432)
T 1h3f_A 246 PPEAMFKKLMRVPD----------------PLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRI 309 (432)
T ss_dssp CHHHHHHHHHTSCG----------------GGHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSSCCSCC
T ss_pred CHHHHHHHHhCCCc----------------cHHHHHHHHcCCCCHHHHHHHHhhChHHHHHHHHHHHHHHHhcccchHHH
Confidence 99999999999832 4788888888876532 5
Q ss_pred HHHHHhcCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 016437 347 RYEEIMSDSAYLDKVLAD----GAAKAADIADATLNNV 380 (389)
Q Consensus 347 r~~~l~~~~~~l~~iL~~----Ga~kAr~~A~~tl~~v 380 (389)
||+++++ ++||++||++ |.+.|++ |.+.-+.+
T Consensus 310 rr~~~~~-~~~v~~il~~~~~~g~~~a~~-a~~~~~~~ 345 (432)
T 1h3f_A 310 DRAFYES-LGYAWEAFGRDKEAGPEEVRR-AEARYDEV 345 (432)
T ss_dssp SHHHHHH-TTCCGGGTTCCTTCSCHHHHH-HHHHHHHH
T ss_pred HHHHhhc-hHHHHHHHhhccccCHHHHHH-HHHHHHHh
Confidence 6777777 8888888888 8887764 44444444
No 27
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=6e-54 Score=431.24 Aligned_cols=224 Identities=24% Similarity=0.217 Sum_probs=185.1
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccC-CCCHHHHHHHHH---H--HHHHHHHcCCCCC
Q 016437 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIYLACGIDNS 150 (389)
Q Consensus 77 ~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~-~~d~~~i~~~~~---~--~~a~~lA~GlDp~ 150 (389)
++++||+||+|||.+|||||+|+++.|..+|.+++++|+||||||+|+ +.+++++.++.. + +.+.|+|||+||+
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999999988888889999999999999997 677777755442 2 4445799999999
Q ss_pred CcEEEEcCCch---hhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcch
Q 016437 151 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (389)
Q Consensus 151 k~~if~QS~v~---eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~ 227 (389)
|+.||+||+|+ ++.++.|.++|.+++.+++|..+ ..... .+++++|+|+||+||||||++|++|+||||+||+
T Consensus 114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~---~v~~~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~ 189 (372)
T 1n3l_A 114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGA---EVVKQ-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR 189 (372)
T ss_dssp TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTT---TTSCC-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchh---hhhcc-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence 99999999996 88889999999999999988632 11111 2568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHH
Q 016437 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (389)
Q Consensus 228 qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kK 307 (389)
+|++++|||+++|| |+.|..++. ++|||| || +|||||++ +++|+|+|+|++|++|
T Consensus 190 ~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-dG-~KMSKS~~--ns~I~L~d~p~~i~kK 244 (372)
T 1n3l_A 190 KIFTFAEKYLPALG------------------YSKRVHLMN---PMVPGL-TG-SKMSSSEE--ESKIDLLDRKEDVKKK 244 (372)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCS-SC-C---------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEec---CccCCC-Cc-ccccCCCC--CCeEeccCCHHHHHHH
Confidence 99999999999996 445777765 679999 67 69999996 3699999999999999
Q ss_pred hhhcccCCCCCcCcCCCCCCchhHHHHHHHH
Q 016437 308 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL 338 (389)
Q Consensus 308 I~kA~TD~~~~~~~~~~~~p~~~nll~i~~~ 338 (389)
||+|+||+.. ++.++++.|+++
T Consensus 245 i~~A~td~~~---------~~d~~v~~~lk~ 266 (372)
T 1n3l_A 245 LKKAFCEPGN---------VENNGVLSFIKH 266 (372)
T ss_dssp HHTCCCCTTC---------CSSCHHHHHHHH
T ss_pred HHHccCCCCC---------CCcccHHHHHHH
Confidence 9999888743 455788888885
No 28
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-54 Score=433.96 Aligned_cols=225 Identities=24% Similarity=0.207 Sum_probs=183.2
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccC-CC-CHHHHHHHH----HHHHHHHHHcCCCCC
Q 016437 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIYLACGIDNS 150 (389)
Q Consensus 77 ~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~-~~-d~~~i~~~~----~~~~a~~lA~GlDp~ 150 (389)
++.+||+||+|||.||||||+++++.|..+|.+++++|+|+||||+|+ +. ..+.++.++ ..+.+.|+|||+||+
T Consensus 38 ~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 38 RHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp SCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 456999999999999999999999999988989999999999999997 44 444555553 455568999999999
Q ss_pred CcEEEEcCCc---hhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcch
Q 016437 151 KASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (389)
Q Consensus 151 k~~if~QS~v---~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~ 227 (389)
++.||+||+| ++|.++.|.++|++++++|+|+.+.+. + . .+++++|+|+||+||||||++|++|+||||+||+
T Consensus 118 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~~--r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~ 193 (394)
T 2dlc_X 118 KLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVV--K-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQR 193 (394)
T ss_dssp TCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTTS--C-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred HcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhhh--c-c-cCCccceeeechhHhhccHhhhCCCEEecCccHH
Confidence 9999999999 678899999999999999998865321 1 1 2567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHH
Q 016437 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (389)
Q Consensus 228 qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kK 307 (389)
+|++++|+|+++|| ++.|..++. ++|||| ||.+|||||++ +++|+|+|+|++|++|
T Consensus 194 ~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-~~G~KMSKS~~--ns~I~L~D~p~~i~kK 249 (394)
T 2dlc_X 194 KIFVLAEENLPSLG------------------YKKRAHLMN---PMVPGL-AQGGKMSASDP--NSKIDLLEEPKQVKKK 249 (394)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCC-C------------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEec---ccccCC-CCCCcCCCCCC--CCEEeccCCHHHHHHH
Confidence 99999999999998 445777776 679999 63379999996 4679999999999999
Q ss_pred hhhcccCCCCCcCcCCCCCCchhHHHHHHHH
Q 016437 308 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL 338 (389)
Q Consensus 308 I~kA~TD~~~~~~~~~~~~p~~~nll~i~~~ 338 (389)
||+|+||+. +++.++++.|+++
T Consensus 250 I~ka~Td~~---------~~~d~~v~~y~k~ 271 (394)
T 2dlc_X 250 INSAFCSPG---------NVEENGLLSFVQY 271 (394)
T ss_dssp HHHSCCCTT---------CCSSCHHHHHHHH
T ss_pred HHHhcCCCC---------CCCcchHHHHHHh
Confidence 999988873 3455666666544
No 29
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=5.2e-54 Score=439.11 Aligned_cols=230 Identities=20% Similarity=0.290 Sum_probs=200.6
Q ss_pred CCCceEEEeecCC-CcchhhhHHHHH-HHHHHHHc--cCcEEEEEeecccccCC-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 016437 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNS 150 (389)
Q Consensus 76 ~~~~~i~sGiqPT-G~lHLGnylgai-~~~v~lQ~--~~~~~i~IaDlhAlt~~-~d~~~i~~~~~~~~a~~lA~GlDp~ 150 (389)
.++++||+||+|| |.||||||++++ .+| ||+ ++.++|+|||+|++++. .+++++++++++++++|+|+|+||+
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~ 183 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDIN 183 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3578999999999 899999999987 577 775 78899999999999985 6899999999999999999999999
Q ss_pred CcEEEEcCCchh----hhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhhhh-----------
Q 016437 151 KASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL----------- 214 (389)
Q Consensus 151 k~~if~QS~v~e----h~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADILl----------- 214 (389)
|++||.||+|+. +.++.| +|+||++++++.+..+ .+++++|+|+||+||||||++
T Consensus 184 kt~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~ 254 (437)
T 1r6u_A 184 KTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRT 254 (437)
T ss_dssp GEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCC
T ss_pred ceEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhccccc
Confidence 999999999985 555443 5778888888877654 457899999999999999999
Q ss_pred cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCC-CCcCCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKMSKSAPSDQS 293 (389)
Q Consensus 215 ~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg-~~KMSKS~~~~~s 293 (389)
|++++||||.||++|++++||||+||| |++|..+.. ++|||| || ++|||||++ ++
T Consensus 255 ~~~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~---pll~gL-dG~~~KMSKS~~--ns 310 (437)
T 1r6u_A 255 DIQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPAL-QGAQTKMSASDP--NS 310 (437)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEET-TEEEEECCTTSS--SS
T ss_pred CCceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeec---ccccCC-CCCccccCCCCC--CC
Confidence 788999999999999999999999999 456877654 789999 55 479999986 46
Q ss_pred cccCCCCHHHHHHHhhh-cccCCCCCcCcC--CCCCCchhHHHHHHHHhc
Q 016437 294 RINLLDPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS 340 (389)
Q Consensus 294 ~I~L~Dspe~I~kKI~k-A~TD~~~~~~~~--~~~~p~~~nll~i~~~~~ 340 (389)
+|+|+|+|++|++|||+ |+||+..++.+. ++++|++++++.|+++|+
T Consensus 311 aI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft 360 (437)
T 1r6u_A 311 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFL 360 (437)
T ss_dssp CCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHC
T ss_pred eeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHc
Confidence 99999999999999999 999997554432 348899999999999997
No 30
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=5.9e-54 Score=429.14 Aligned_cols=245 Identities=19% Similarity=0.183 Sum_probs=187.0
Q ss_pred CCceEEEeecCCCc-chhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-CC---------CHHHHHHHHHHHHHHHHH
Q 016437 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (389)
Q Consensus 77 ~~~~i~sGiqPTG~-lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~~---------d~~~i~~~~~~~~a~~lA 144 (389)
++++||+||+|||. |||||++ ++.+|++||+ +++++|+|||+||+|+ +. +++++++|+++++++|+|
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a 123 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEA 123 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999997 9999955 6889999998 7999999999999998 32 699999999999999999
Q ss_pred cCCCCCC-----------cEEEEcCCchhhhHHHHHHhc---cCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhh
Q 016437 145 CGIDNSK-----------ASVFVQSHVRAHVELMWLLSS---ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 210 (389)
Q Consensus 145 ~GlDp~k-----------~~if~QS~v~eh~eL~w~L~~---~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAA 210 (389)
+ +||++ ++||.||+|..+.++.|++.+ .+++++|.+..+||++... .+++++|+|+||+||||
T Consensus 124 ~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQAa 200 (356)
T 2pid_A 124 L-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQAY 200 (356)
T ss_dssp H-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHHH
T ss_pred h-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHHH
Confidence 9 99855 899999999888778887664 8999999999999876543 24689999999999999
Q ss_pred hhhhc----CCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCC
Q 016437 211 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (389)
Q Consensus 211 DILl~----~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSK 286 (389)
||++| ++|+||||.||+||+|++||||+|||+ +. +|.+| . ++|||+ || +||||
T Consensus 201 Dil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~--~~------------~~~l~----~---pll~~l-dG-~KMSK 257 (356)
T 2pid_A 201 DFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTG--ED------------VFGIT----V---PLITST-TG-AKLGK 257 (356)
T ss_dssp HHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSS--CC------------CEEEE----E---CCCC-----------
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC--CC------------ccccc----c---ccccCC-Cc-ccccC
Confidence 99999 999999999999999999999999994 21 23333 2 568898 78 69999
Q ss_pred CCCCCCCcccCCC---CHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCHHHHHHHHhc--CHHHHHHH
Q 016437 287 SAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMS--DSAYLDKV 361 (389)
Q Consensus 287 S~~~~~s~I~L~D---spe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~~r~~~l~~--~~~~l~~i 361 (389)
|. +|+|+|+| +|++|++||+++ . ++++.+++.||.+++++++++-.+++.+ ....+.+.
T Consensus 258 S~---~naI~L~d~~tsp~~i~~ki~~~---------~----D~~v~~~l~~~t~~~~~~i~~l~~~~~~g~~~~~~K~~ 321 (356)
T 2pid_A 258 SA---GNAVWLNRDKTSPFELYQFFVRQ---------P----DDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKR 321 (356)
T ss_dssp -------CCBSSTTTSCHHHHHHHHHTC---------C----HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred CC---CCeeeccCCCCCHHHHHHHHHcC---------C----chhHHHHHHHHHcCCchHHHHHHHHHhcCCCHHHHHHH
Confidence 96 68999999 999999999996 1 2345666666655555544433333332 23345555
Q ss_pred HHH
Q 016437 362 LAD 364 (389)
Q Consensus 362 L~~ 364 (389)
|.+
T Consensus 322 La~ 324 (356)
T 2pid_A 322 LAA 324 (356)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 31
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.7e-53 Score=434.73 Aligned_cols=246 Identities=13% Similarity=0.129 Sum_probs=201.4
Q ss_pred CCceEEEeecCCCc-chhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-C--------CCHHHHHHHHHHH---HHHH
Q 016437 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAIY 142 (389)
Q Consensus 77 ~~~~i~sGiqPTG~-lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~--------~d~~~i~~~~~~~---~a~~ 142 (389)
+++++|+||+|||+ +||||++ ++.+|++||+ |++++|+|||+||+|+ | .+++++++|++++ ++.|
T Consensus 31 ~~~~iy~G~dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~ 109 (432)
T 2jan_A 31 GPMTVYAGFDPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERF 109 (432)
T ss_dssp SCCEEEEEECCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999996 9999965 6789999998 7999999999999998 5 6889999999765 6779
Q ss_pred HHcCCCCCCcEEEEcCCchhh-hHHHHH--HhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhc----
Q 016437 143 LACGIDNSKASVFVQSHVRAH-VELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (389)
Q Consensus 143 lA~GlDp~k~~if~QS~v~eh-~eL~w~--L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~---- 215 (389)
+|+|+||+|++||+||+|+++ .++.|+ ++|.+++++|.|+.+||++. . .+++++|+|+||+||||||++|
T Consensus 110 La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~-~--~~~is~~ef~YPlLQaaDil~l~~~~ 186 (432)
T 2jan_A 110 VDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL-A--GEGISYTEFSYLLLQANDYVELHRRH 186 (432)
T ss_dssp SCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT-S--TTCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh-c--CCCcchHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999874 588998 89999999999999999876 2 2568999999999999999999
Q ss_pred CCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcc
Q 016437 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (389)
Q Consensus 216 ~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I 295 (389)
++|+||||.||++|++++||||+|||+. .|..+.. ++||++ || +|||||++ +++|
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~------------------~~~~l~~---plL~~l-dG-~KMSKS~~--nsaI 241 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLGA------------------TVHALTV---PLVTAA-DG-TKFGKSTG--GGSL 241 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHCC------------------CCEEEEC---CCCBCT-TS-CBTTBCSS--SCBC
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCC------------------Ccccccc---ccccCC-Cc-CcCCCCCC--CCeE
Confidence 9999999999999999999999999942 1223333 678998 88 69999985 3599
Q ss_pred cCCC---CHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCHHHHHHHHhc--CHHHHHHHHHH
Q 016437 296 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMS--DSAYLDKVLAD 364 (389)
Q Consensus 296 ~L~D---spe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~~r~~~l~~--~~~~l~~iL~~ 364 (389)
+|+| +|+++++||+++ . ++++.+++.+|.+++.+++++-.+++.+ .+..+.++|.+
T Consensus 242 ~L~d~~tsp~~i~qki~~~---------~----D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA~ 302 (432)
T 2jan_A 242 WLDPQMTSPYAWYQYFVNT---------A----DADVIRYLRWFTFLSADELAELEQATAQRPQQRAAQRRLAS 302 (432)
T ss_dssp BSSTTTSCHHHHHHHHHTC---------C----HHHHHHHHHHHSCCCHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred EccCCCCCHHHHHHHHhcC---------C----chhHHHHHHHHHcCChHHHHHHHHHHhhccCHHHHHHHHHH
Confidence 9999 999999999996 1 1345555555555544444433333432 33446666654
No 32
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=2.8e-53 Score=438.20 Aligned_cols=230 Identities=20% Similarity=0.290 Sum_probs=199.3
Q ss_pred CCCceEEEeecCC-CcchhhhHHHHH-HHHHHHHc--cCcEEEEEeecccccC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 016437 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (389)
Q Consensus 76 ~~~~~i~sGiqPT-G~lHLGnylgai-~~~v~lQ~--~~~~~i~IaDlhAlt~-~~d~~~i~~~~~~~~a~~lA~GlDp~ 150 (389)
.+++++|+||+|| |.||||||+|++ .+| ||+ ++.++|+|||+|++++ ..+++++++++++++++|+|||+||+
T Consensus 153 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~ 230 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDIN 230 (477)
T ss_dssp TCCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3478999999999 899999999988 688 775 7889999999999987 46899999999999999999999999
Q ss_pred CcEEEEcCCchh----hhHHHHHHhccCcHHHHhchhhHHHHHHhhC-CCCcccccchhhHHHhhhhhh-----------
Q 016437 151 KASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL----------- 214 (389)
Q Consensus 151 k~~if~QS~v~e----h~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~-~~~~~~gll~YPvLQAADILl----------- 214 (389)
|++||.||+|++ +.++.| +|+|+++++++.+..+ .+++++|+|+||+||||||++
T Consensus 231 k~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~ 301 (477)
T 1r6t_A 231 KTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRT 301 (477)
T ss_dssp SEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCC
T ss_pred ceEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhcccc
Confidence 999999999985 555544 6678888887776553 356899999999999999999
Q ss_pred cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCC-CCcCCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKMSKSAPSDQS 293 (389)
Q Consensus 215 ~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg-~~KMSKS~~~~~s 293 (389)
|++++||||.||++|++++||||+||| |++|..+.. ++|||| || ++|||||++ ++
T Consensus 302 ~~~~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---pll~gL-dG~~~KMSKS~~--ns 357 (477)
T 1r6t_A 302 DIQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPAL-QGAQTKMSASDP--NS 357 (477)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEET-TEEEEECCTTST--TC
T ss_pred CCceeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeec---ccccCC-CCCccccCCCCC--CC
Confidence 688999999999999999999999998 456777654 789999 55 479999986 36
Q ss_pred cccCCCCHHHHHHHhhh-cccCCCCCcCcC--CCCCCchhHHHHHHHHhc
Q 016437 294 RINLLDPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS 340 (389)
Q Consensus 294 ~I~L~Dspe~I~kKI~k-A~TD~~~~~~~~--~~~~p~~~nll~i~~~~~ 340 (389)
+|+|+|+|++|++|||+ |+||+..+..+. ++++|++++++.|+++|+
T Consensus 358 aI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft 407 (477)
T 1r6t_A 358 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFL 407 (477)
T ss_dssp CCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHC
T ss_pred ceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHc
Confidence 99999999999999999 999996544332 358899999999999997
No 33
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=1.3e-51 Score=419.99 Aligned_cols=256 Identities=15% Similarity=0.131 Sum_probs=207.4
Q ss_pred CCceEEEeecCCCc-chhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-CC---------CHHHHHHHHHHHHHHHHH
Q 016437 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (389)
Q Consensus 77 ~~~~i~sGiqPTG~-lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~~---------d~~~i~~~~~~~~a~~lA 144 (389)
+++++|+||+|||. +|||||++ +.+|++||+ |++++|+|||+||+|+ |. +++++++|+.++.+++++
T Consensus 31 ~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~ 109 (420)
T 1jil_A 31 EQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHN 109 (420)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999 99999995 789999998 7999999999999998 43 899999999999999999
Q ss_pred cCCCC---CCcEEEEcCCch-hhhHHHHHH--hccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhc---
Q 016437 145 CGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (389)
Q Consensus 145 ~GlDp---~k~~if~QS~v~-eh~eL~w~L--~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~--- 215 (389)
+ ||| +|++||.||+|+ ++.++.|+. ++.+++++|.++.+||++. + +++++|+|+||+||||||++|
T Consensus 110 ~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~---~-~~is~~ef~YplLQaaD~l~l~~~ 184 (420)
T 1jil_A 110 I-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL---E-HGISYTEFTYTILQAIDFGHLNRE 184 (420)
T ss_dssp H-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH---T-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc---c-CCcchHHHHHHHHHHHHHHHHhcc
Confidence 9 999 999999999997 679999986 7999999999999998765 2 568999999999999999999
Q ss_pred -CCcEEeecCcchHHHHHHHHHHHHh-hhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 016437 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (389)
Q Consensus 216 -~adiVpvG~DQ~qhleLtRdiA~rf-N~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s 293 (389)
++|+||||.||++|++++||||+|| |+ + .|..+.. ++||++ || +|||||+ +|
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~r~~~~--~----------------~~~~l~~---pll~~l-dG-~KMSKS~---~n 238 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMRRMYGQ--T----------------DAYGLTI---PLVTKS-DG-KKFGKSE---SG 238 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHCC--C----------------CCEEEEE---CCCBCT-TS-CBTTBCS---SS
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCC--C----------------CeeEeec---ccccCC-cc-ccccCCC---CC
Confidence 9999999999999999999999999 73 1 1223333 678998 88 6999998 57
Q ss_pred cccCCC---CHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCHHHHHHHHhc--CHHHHHHHHHH----
Q 016437 294 RINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMS--DSAYLDKVLAD---- 364 (389)
Q Consensus 294 ~I~L~D---spe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~~r~~~l~~--~~~~l~~iL~~---- 364 (389)
+|+|+| +|+++++||+++ . ++++.+++.||.+++.+++++-.+++.+ ++..+.++|.+
T Consensus 239 aI~L~d~~tsp~~i~~ki~~~---------~----D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~K~~La~~v~~ 305 (420)
T 1jil_A 239 AVWLDAEKTSPYEFYQFWINQ---------S----DEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTK 305 (420)
T ss_dssp BCBSSTTTSCHHHHHHHHHTC---------C----HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred eEecCCCCCCHHHHHHHHhcC---------C----chhHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 999999 999999999996 1 1334444444444444444433333332 34456666665
Q ss_pred ------HHHHHHHHHHHHH
Q 016437 365 ------GAAKAADIADATL 377 (389)
Q Consensus 365 ------Ga~kAr~~A~~tl 377 (389)
++++|.+.++...
T Consensus 306 ~~hg~~~~~~a~~~~~~~f 324 (420)
T 1jil_A 306 FIHGEDALNDAIRISQALF 324 (420)
T ss_dssp HHHCHHHHHHHHHHHHHHC
T ss_pred HHcCHHHHHHHHHHHHHHh
Confidence 5666666555443
No 34
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=3.1e-51 Score=413.98 Aligned_cols=258 Identities=18% Similarity=0.154 Sum_probs=201.8
Q ss_pred CCceEEEeecCCCc-chhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-C---------CCHHHHHHHHHHHHHHHHH
Q 016437 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (389)
Q Consensus 77 ~~~~i~sGiqPTG~-lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~---------~d~~~i~~~~~~~~a~~lA 144 (389)
+++++|+||+|||. ||||||++ +.+|++||+ |++++|+|||+||+|+ + .+++++++|+.++.+++++
T Consensus 63 ~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a 141 (392)
T 1y42_X 63 RRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKK 141 (392)
T ss_dssp CCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHH
Confidence 36799999999999 99999995 789999998 7999999999999998 4 3788999999999998888
Q ss_pred cC-----------CC---CCCcEEEEcCCc-hhhhHHHHH--HhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHH
Q 016437 145 CG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVL 207 (389)
Q Consensus 145 ~G-----------lD---p~k~~if~QS~v-~eh~eL~w~--L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvL 207 (389)
+| +| |+++.||.||+| +++.++.|+ +++.+++++|.+..+||.+... .+++++|+|+||+|
T Consensus 142 ~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~--~~~is~gef~YPlL 219 (392)
T 1y42_X 142 LWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQ--GDGVSFAEFTYPIM 219 (392)
T ss_dssp HHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSS--SSCCCHHHHHHHHH
T ss_pred HhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcC--CCCcccHHHHHHHH
Confidence 75 45 789999999997 788899999 8899999998777788765432 25789999999999
Q ss_pred Hhhhhhhc----CCcEEeecCcchHHHHHHHHHHHHhhhhhcC--c---cccccCCCCCccccCCccccCCCCcccccCC
Q 016437 208 MASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGG--R---KWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (389)
Q Consensus 208 QAADILl~----~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~--~---~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~ 278 (389)
|||||+++ ++|+||||.||+||++++||||+|||+.|+. + ..++++ ++.|..+.. ++||+|
T Consensus 220 QAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~---pll~~l- 289 (392)
T 1y42_X 220 QGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTV---PLLTDS- 289 (392)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEEC---CCCBCT-
T ss_pred HHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccc---ccCcCC-
Confidence 99999977 6999999999999999999999999998731 0 001111 223434433 789999
Q ss_pred CCCCcCCCCCCCCCCcccCCC---CHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCHHHHHHHHhc--
Q 016437 279 DGLSKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMS-- 353 (389)
Q Consensus 279 dg~~KMSKS~~~~~s~I~L~D---spe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~~r~~~l~~-- 353 (389)
|| +|||||. +|+|+|+| +|+++++||+++ . ++++.+++.+|.+++.+++++-.+++.+
T Consensus 290 dG-~KMSKS~---~naI~L~d~~tsp~~i~qki~~~---------~----D~~v~~~l~~ft~l~~~ei~~l~~~~~~g~ 352 (392)
T 1y42_X 290 SG-AKFGKSA---GNAIWLDPYQTSVFDFYGYFVRR---------S----DQEVENLLKLFTFMPISEITKTMEEHIKDP 352 (392)
T ss_dssp TC-CBTTBCS---SSBCBSSTTTSCHHHHHHHHHTC---------C----TTTHHHHHHHHCCCCHHHHHHHHHHHHHCG
T ss_pred ch-hhccCCC---CCeeeccCCCCCHHHHHHHHHcC---------C----chhHHHHHHHHHhCChhHHHHHHHHHhcCC
Confidence 78 6999997 58999999 999999999996 1 2466777777666655555433334433
Q ss_pred CHHHHHHHHHH
Q 016437 354 DSAYLDKVLAD 364 (389)
Q Consensus 354 ~~~~l~~iL~~ 364 (389)
.+..+.++|.+
T Consensus 353 ~~~~~K~~LA~ 363 (392)
T 1y42_X 353 SKRVAQHTLAR 363 (392)
T ss_dssp GGCHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 23345555544
No 35
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=5.4e-52 Score=422.52 Aligned_cols=257 Identities=15% Similarity=0.173 Sum_probs=195.6
Q ss_pred CCceEEEeecCCCc-chhhhHHHHHHHHHHHHc-cCcEEEEEeecccccC-CC---------CHHHHHHHHHHH---HHH
Q 016437 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRET---AAI 141 (389)
Q Consensus 77 ~~~~i~sGiqPTG~-lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~-~~---------d~~~i~~~~~~~---~a~ 141 (389)
+++++|+||+|||. +|||||++ +.+|++||+ |++++|+|||+||+|+ |. +++++++|+.++ ++.
T Consensus 29 ~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 29 ERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGR 107 (419)
T ss_dssp SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999 99999995 789999998 7999999999999998 43 899999999766 667
Q ss_pred HHHcCCCCCCcEEEEcCCchhhhHHHHHHh---ccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhc---
Q 016437 142 YLACGIDNSKASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (389)
Q Consensus 142 ~lA~GlDp~k~~if~QS~v~eh~eL~w~L~---~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~--- 215 (389)
|+++|+||+|++||.||+|+.+..+.|+|. ..+++++|.+...||. +. .+++++|+|+||+||||||++|
T Consensus 108 ~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~---r~-~~~is~~ef~YPlLQaaDil~l~~~ 183 (419)
T 2ts1_A 108 FLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQS---RI-ETGISFTEFSYMMLQAYDFLRLYET 183 (419)
T ss_dssp SSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHT---TT-TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhh---cc-CCCcchHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999988777777665 4566666655555543 33 2578999999999999999999
Q ss_pred -CCcEEeecCcchHHHHHHHHHHHHh-hhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 016437 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (389)
Q Consensus 216 -~adiVpvG~DQ~qhleLtRdiA~rf-N~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s 293 (389)
++|+||||.||++|++++||||+|| |.. .|..+.. +.||++ || +|||||. +|
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~------------------~~~~lt~---pll~~l-dG-~KMSKS~---~n 237 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELIRKTKGEA------------------RAFGLTI---PLVTKA-DG-TKFGKTE---SG 237 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEE---CCCCCT-TS-CCTTCCS---SC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCCC------------------Ceeeccc---ccccCC-Cc-ccccCCC---CC
Confidence 9999999999999999999999999 841 1222332 568898 88 6999997 58
Q ss_pred cccCCC---CHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCHHHHHHHHhc--CHHHHHHHHHH----
Q 016437 294 RINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMS--DSAYLDKVLAD---- 364 (389)
Q Consensus 294 ~I~L~D---spe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~~r~~~l~~--~~~~l~~iL~~---- 364 (389)
+|+|+| +|+++++|||++ . ++++.+++.||.+++.+++++-.+++.+ ++..+.++|.+
T Consensus 238 aI~L~d~~tsp~~i~qki~~~---------~----D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA~~v~~ 304 (419)
T 2ts1_A 238 TIWLDKEKTSPYEFYQFWINT---------D----DRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTK 304 (419)
T ss_dssp CCBSSTTTSCHHHHHHHHHTC---------C----HHHHHHHHHHHCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred eEecCCCCCCHHHHHHHHhcC---------C----chhHHHHHHHHHcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 999999 999999999996 1 1334444444444444444333333332 34456666655
Q ss_pred ------HHHHHHHHHHHHH
Q 016437 365 ------GAAKAADIADATL 377 (389)
Q Consensus 365 ------Ga~kAr~~A~~tl 377 (389)
++++|.+.++...
T Consensus 305 ~~hg~~~~~~a~~~~~~lf 323 (419)
T 2ts1_A 305 LVHGEEALRQAIRISEALF 323 (419)
T ss_dssp HHHCHHHHHHHHHHC----
T ss_pred HHcCHHHHHHHHHHHHHHh
Confidence 5566655554443
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=4.2e-40 Score=352.66 Aligned_cols=221 Identities=14% Similarity=0.147 Sum_probs=180.2
Q ss_pred CCCCCCceEEEeecCCCcchhhhHHHHHHHHHHHH-c--cCcEEEEEeecccccC-C--CCHHHHHHHHHHHHHHHHHcC
Q 016437 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-N--SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLACG 146 (389)
Q Consensus 73 ~~~~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ-~--~~~~~i~IaDlhAlt~-~--~d~~~i~~~~~~~~a~~lA~G 146 (389)
+....+..|+++- |||.+||||++++++.|.++| . +++++|+||||||+++ + .+++++++++.+++++|+|+|
T Consensus 377 ~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG 455 (690)
T 3p0j_A 377 AAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYG 455 (690)
T ss_dssp CCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 3444456678877 999999999999766466653 3 7899999999999998 3 689999999999999999999
Q ss_pred CCCCCcEEEEcCCchhh-hHHHHH----HhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEe
Q 016437 147 IDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVP 221 (389)
Q Consensus 147 lDp~k~~if~QS~v~eh-~eL~w~----L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVp 221 (389)
+|| |++|++||+|+.. .+++|. ++..++++|+.+.. +.+++++|+|+||+||+|||+.+++|++|
T Consensus 456 ~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~l~aDi~~ 525 (690)
T 3p0j_A 456 LPS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALMLSVSHVI 525 (690)
T ss_dssp CCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred CCc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhccCCCEEe
Confidence 998 7999999998643 256775 56788888777642 23678999999999999999999999999
Q ss_pred ecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCH
Q 016437 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 301 (389)
Q Consensus 222 vG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dsp 301 (389)
+|.||++|++|+||+|+++++ |..++. .++|+|+++.++||||++ +|+|+|+|+|
T Consensus 526 gG~DQ~~~~~LaRd~~~~~~~--------------------~~~~~~---~~~P~L~gp~~~~~~~s~--~~~I~l~D~~ 580 (690)
T 3p0j_A 526 STSLDGHINAFAREYTKERID--------------------CVQTLE---GRIPALHRPGAAPAVLGA--DDVLYLDDND 580 (690)
T ss_dssp ECSTTTTTTHHHHHHTTTCSE--------------------EEECCC---CSSCCSSCCCC---------CCSCBTTCCH
T ss_pred cccccHHHHHHHHHHHHhccC--------------------cccccc---cccccCCCcccccCCCCC--CCeeeccCCH
Confidence 999999999999999998652 333333 679999666566667764 7999999999
Q ss_pred HHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHh
Q 016437 302 DVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI 339 (389)
Q Consensus 302 e~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~ 339 (389)
++|++|||+| ||||+ .+.|++++|++++
T Consensus 581 ~~i~~KI~kA---------~c~p~-ve~np~l~~~~~~ 608 (690)
T 3p0j_A 581 MDIRRKIKKA---------YSAPN-EEANPVISVAQHL 608 (690)
T ss_dssp HHHHHHHHHS---------CCCTT-CSCSHHHHHHHHH
T ss_pred HHHHHHHHHh---------cCCCC-CCCChHHHHHHHH
Confidence 9999999999 88886 8899999999987
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.37 E-value=5.6e-13 Score=130.19 Aligned_cols=195 Identities=15% Similarity=0.194 Sum_probs=116.3
Q ss_pred eecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCchh
Q 016437 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 162 (389)
Q Consensus 84 GiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e 162 (389)
--.|||.+||||+.+++.+|+..+. +..++..|.|... .....+....+.+++.++||++++. +++||+..+
T Consensus 11 APsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~------~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~ 83 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDP------PREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHD 83 (298)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCG------GGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHH
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCc------hhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHH
Confidence 3467899999999999999988875 4456668999642 2344567888999999999999975 899999643
Q ss_pred -hhH-------HHHHHhccCcHHHHhchhh-HHHHHHh---hC---------C------CCcccccchhhH-HHhhhhhh
Q 016437 163 -HVE-------LMWLLSSATPIGWLNKMIQ-FKEKSHK---AG---------G------ENVGVALLTYPV-LMASDILL 214 (389)
Q Consensus 163 -h~e-------L~w~L~~~~~~~~L~R~~~-~K~k~~~---~~---------~------~~~~~gll~YPv-LQAADILl 214 (389)
+.+ ..+.+.|+++-.+|+++.. |....+. .+ . ++.-.|.+.++. ...-|.++
T Consensus 84 ~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL 163 (298)
T 1nzj_A 84 AYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFII 163 (298)
T ss_dssp HHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEE
T ss_pred HHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEE
Confidence 211 1122568999999876411 1000000 00 0 011235555554 45667777
Q ss_pred cCCcEEee-------------------cCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccc
Q 016437 215 YQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM 275 (389)
Q Consensus 215 ~~adiVpv-------------------G~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lp 275 (389)
+++|-.|. |+|+..+...-..+.+.|+ ++.|...+. +.|.
T Consensus 164 ~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~---pll~ 222 (298)
T 1nzj_A 164 HRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHL---PLAL 222 (298)
T ss_dssp ECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CBCC
T ss_pred ECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEe---eeeE
Confidence 77666666 9999988777666667665 344666554 5677
Q ss_pred cCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhh
Q 016437 276 SLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (389)
Q Consensus 276 gL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~k 310 (389)
+. +| +||||+..+ ..|.-.++...+..-+..
T Consensus 223 ~~-~g-~KLSKR~g~--~~v~~~~~~~~~~~~l~~ 253 (298)
T 1nzj_A 223 NP-QG-AKLSKQNHA--PALPKGDPRPVLIAALQF 253 (298)
T ss_dssp C-----------------CCCSSCCHHHHHHHHHH
T ss_pred CC-CC-CcccccCCc--cChhcCCccHHHHHHHHH
Confidence 86 67 699999842 334444555554444433
No 38
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.33 E-value=6.6e-13 Score=137.82 Aligned_cols=200 Identities=18% Similarity=0.169 Sum_probs=134.7
Q ss_pred eecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-------EEE
Q 016437 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVF 155 (389)
Q Consensus 84 GiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~-------~if 155 (389)
-=.|||.|||||+..++.+|...+. +..+++-|.|... .....+....+..++.++||+++.. .+|
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~------~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~ 85 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDA------QRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPY 85 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCT------TTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCC------cccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCe
Confidence 3468899999999999999987776 4344455999842 2335567888899999999999974 589
Q ss_pred EcCCchhhh-HHH-------HHHhccCcHHHHhchh---------hHHHHH---------H--hhCCC----------Cc
Q 016437 156 VQSHVRAHV-ELM-------WLLSSATPIGWLNKMI---------QFKEKS---------H--KAGGE----------NV 197 (389)
Q Consensus 156 ~QS~v~eh~-eL~-------w~L~~~~~~~~L~R~~---------~~K~k~---------~--~~~~~----------~~ 197 (389)
+||+..+.- +.. ..+.|+++-.+|+++. .|.... + ..+.. .+
T Consensus 86 ~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~ 165 (498)
T 2ja2_A 86 RQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDL 165 (498)
T ss_dssp BGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCE
T ss_pred eeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCce
Confidence 999975432 111 1256999999987652 121110 0 00100 00
Q ss_pred -----ccccchhhHHHhhhhhhcCCcEEee-------------------cCcchHHHHHHHHHHHHhhhhhcCccccccC
Q 016437 198 -----GVALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLG 253 (389)
Q Consensus 198 -----~~gll~YPvLQAADILl~~adiVpv-------------------G~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~ 253 (389)
-.|.+.|+.-+.-|.+++++|..|. |+|+..+...-+.|.+.||. +|-.
T Consensus 166 ~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g~g------ 238 (498)
T 2ja2_A 166 AWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IGVA------ 238 (498)
T ss_dssp EEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TTSC------
T ss_pred EEEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hcCC------
Confidence 1244667666667777776666666 99999999999999999976 5310
Q ss_pred CCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC------CHHHHHHHhhhc
Q 016437 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (389)
Q Consensus 254 ~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D------spe~I~kKI~kA 311 (389)
++.|+..+. +.+.+. +| +||||++. .+.|.+ .|+.|..-+...
T Consensus 239 ------~~~P~~~h~---plil~~-~g-~KLSKR~g----~~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 239 ------ERIPKFAHL---PTVLGE-GT-KKLSKRDP----QSNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp ------CCCCEEEEE---CCEECS-SS-SBCCTTSG----GGBHHHHHHHTCCHHHHHHHHHTS
T ss_pred ------CCCCeEEEe---eeeECC-CC-CcccccCC----cccHHHHHhCCCCHHHHHHHHHHh
Confidence 455766655 457786 67 69999973 234433 577777777654
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.24 E-value=3.4e-12 Score=131.68 Aligned_cols=193 Identities=17% Similarity=0.156 Sum_probs=132.0
Q ss_pred cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE-------EEEc
Q 016437 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ 157 (389)
Q Consensus 86 qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~-------if~Q 157 (389)
.|||.+||||+..++.+|...+. +..+++.|.|... .....+....+..++.++||+|+... .|+|
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~------~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~Q 82 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDR------ARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQ 82 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCT------TSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBG
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC------cccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeec
Confidence 68899999999999999987765 4566678998843 22344567788899999999999753 4999
Q ss_pred CCchh-hhHHH-------HHHhccCcHHHHhchh-------------hHHHHHHh--hCC-----------CCc-----c
Q 016437 158 SHVRA-HVELM-------WLLSSATPIGWLNKMI-------------QFKEKSHK--AGG-----------ENV-----G 198 (389)
Q Consensus 158 S~v~e-h~eL~-------w~L~~~~~~~~L~R~~-------------~~K~k~~~--~~~-----------~~~-----~ 198 (389)
|+..+ |.+.. ..+.|+++-.+|+++. +..+..+. .|. +.+ -
T Consensus 83 S~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~ 162 (468)
T 1j09_A 83 SERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL 162 (468)
T ss_dssp GGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEecc
Confidence 99754 22211 1256999999887642 11111110 010 001 1
Q ss_pred cccchhhHHHhhhhhhcCCcEEee-------------------cCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCcc
Q 016437 199 VALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 259 (389)
Q Consensus 199 ~gll~YPvLQAADILl~~adiVpv-------------------G~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~ 259 (389)
.|.+.+|..+.-|.+++++|..|. |.|+..|...-..+.+.|+
T Consensus 163 ~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------ 224 (468)
T 1j09_A 163 RGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG------------------ 224 (468)
T ss_dssp TEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT------------------
T ss_pred ceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC------------------
Confidence 255777777778888887777766 9999999999999998886
Q ss_pred ccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC------CHHHHHHHhhhc
Q 016437 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (389)
Q Consensus 260 f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D------spe~I~kKI~kA 311 (389)
++.|+..+. +.+.+. +| +||||+..+ . .|.+ .|+.|..-+...
T Consensus 225 ~~~p~~~h~---~li~~~-~g-~klSKR~g~---~-~l~~~~~~G~~peal~~~l~~l 273 (468)
T 1j09_A 225 WEAPRFYHM---PLLRNP-DK-TKISKRKSH---T-SLDWYKAEGFLPEALRNYLCLM 273 (468)
T ss_dssp CCCCEEEEE---CCCBCT-TS-CBCCTTTSC---C-BHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCeEEEe---eeeeCC-CC-Cccccccch---h-hHHHHHHCCCCHHHHHHHHHHh
Confidence 344655443 456776 67 699999843 2 3332 688888877764
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.20 E-value=2.1e-12 Score=133.88 Aligned_cols=200 Identities=15% Similarity=0.158 Sum_probs=130.9
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE----
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 153 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~---- 153 (389)
.++=..=.|||.+||||+..++.+|...+. +..+++.|.|... .....+....+..++.++||+++...
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~------~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG 99 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDT------ERSSREYEQQILESLRWCGLDWDEGPDIGG 99 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCT------TTCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCc------ccccHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 345555578899999999999999987765 5568888999843 23355677888999999999999753
Q ss_pred ---EEEcCCchh-hhHHHH-------HHhccCcHHHHhch--hhHHHHH--HhhC---------C-CC-----cccccch
Q 016437 154 ---VFVQSHVRA-HVELMW-------LLSSATPIGWLNKM--IQFKEKS--HKAG---------G-EN-----VGVALLT 203 (389)
Q Consensus 154 ---if~QS~v~e-h~eL~w-------~L~~~~~~~~L~R~--~~~K~k~--~~~~---------~-~~-----~~~gll~ 203 (389)
.|+||+..+ +.+..- .+.|+++-.+|+++ +.|.... ...| . .. .-.|.+.
T Consensus 100 ~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~ 179 (488)
T 3afh_A 100 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179 (488)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEe
Confidence 699999753 222111 14588887777652 1121100 0001 0 00 0123344
Q ss_pred hhHHHhhhhhhc-------------------CCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCc
Q 016437 204 YPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (389)
Q Consensus 204 YPvLQAADILl~-------------------~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~ 264 (389)
++.-+.-|.+++ +.++|.-|+|+..+...-..|.+.|+ ++.|+
T Consensus 180 ~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG------------------~~~P~ 241 (488)
T 3afh_A 180 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 241 (488)
T ss_dssp EEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCE
T ss_pred ecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC------------------CCCCe
Confidence 444444444444 45566669999999999999999887 44576
Q ss_pred cccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC------CHHHHHHHhhhc
Q 016437 265 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (389)
Q Consensus 265 ~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D------spe~I~kKI~kA 311 (389)
..+. +.|.+. +| +||||++.+ +.|.+ .|+.|..-+...
T Consensus 242 f~H~---pli~~~-~g-~KLSKR~g~----~~l~~~r~~G~~peal~n~l~~l 285 (488)
T 3afh_A 242 FMHI---PLILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLALL 285 (488)
T ss_dssp EEEE---CCEECT-TS-SBCCTTTSC----CBHHHHHHHTCCHHHHHHHHHHT
T ss_pred EEEE---eeeeCC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHHh
Confidence 6655 557786 77 699999842 34433 688888877764
No 41
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.11 E-value=6.8e-12 Score=132.72 Aligned_cols=200 Identities=15% Similarity=0.165 Sum_probs=127.3
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE----
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 153 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~---- 153 (389)
.++=..=.|||.|||||+.+++.+|...+. +.++++.|.|... .....+....+..++.++||+++...
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~------~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG 203 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDT------ERSSREYEQQILESLRWCGLDWDEGPDIGG 203 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCS------SSCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcCh------hhccHHHHHHHHHHHHHcCCCCCCCCCcCC
Confidence 445455688999999999999999987655 5568888999531 22355667788899999999999753
Q ss_pred ---EEEcCCchh-hhHHH-------HHHhccCcHHHHhch--hhHHHHHH--hhC---------C-C-----Ccccccch
Q 016437 154 ---VFVQSHVRA-HVELM-------WLLSSATPIGWLNKM--IQFKEKSH--KAG---------G-E-----NVGVALLT 203 (389)
Q Consensus 154 ---if~QS~v~e-h~eL~-------w~L~~~~~~~~L~R~--~~~K~k~~--~~~---------~-~-----~~~~gll~ 203 (389)
.|+||+..+ +.+.. ..+.|+++-.+|++. +.|....+ ..| . . +.-.|.+.
T Consensus 204 ~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~ 283 (592)
T 3al0_C 204 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 283 (592)
T ss_dssp TTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceee
Confidence 699999753 21111 124588887766652 11111000 000 0 0 01123444
Q ss_pred hhHHHhhhhhhcC-------------------CcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCc
Q 016437 204 YPVLMASDILLYQ-------------------SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (389)
Q Consensus 204 YPvLQAADILl~~-------------------adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~ 264 (389)
+|.-+.-|.++++ .++|.-|.|+..|...-+.+.+.|+ ++.|+
T Consensus 284 ~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~P~ 345 (592)
T 3al0_C 284 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 345 (592)
T ss_dssp CCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT------------------CCCCB
T ss_pred eccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC------------------CCCCe
Confidence 4444444444444 5555559999999998888888776 34465
Q ss_pred cccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC------CHHHHHHHhhhc
Q 016437 265 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (389)
Q Consensus 265 ~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D------spe~I~kKI~kA 311 (389)
..+. +.|.+. +| +||||++.+ +.|.+ .|+.|..-+...
T Consensus 346 ~~hl---pli~~~-~g-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~l 389 (592)
T 3al0_C 346 FMHI---PLILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLALL 389 (592)
T ss_dssp CCEE---CCCBCT-TS-SBCCTTTCS----SBHHHHHHTTCCHHHHHHHHTTT
T ss_pred EEEe---eeeeCC-CC-CcccccCCc----ccHHHHHHCCCCHHHHHHHHHHh
Confidence 4444 557786 67 699999842 34432 688888887764
No 42
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.03 E-value=3.7e-10 Score=117.11 Aligned_cols=195 Identities=16% Similarity=0.166 Sum_probs=126.4
Q ss_pred EeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcCCch
Q 016437 83 SGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (389)
Q Consensus 83 sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~ 161 (389)
..=.|||.+||||+..++.+|+..+. +..+++-|.|... .....+.+..+..++.++||+++. .+|+||+..
T Consensus 6 FAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~------~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~ 78 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDR------ERSRPEYTENILEGLQWLGLTWDE-GPYFQSDRL 78 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSS------SSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCc------cccchHHHHHHHHHHHHcCCCCCC-CCccccCCH
Confidence 34468899999999999999987765 5567888999853 223456788899999999999996 489999964
Q ss_pred h-hhHHHHH-------HhccCcHHHHhchh----------hHHH---------HHH--hhCCC-----Ccc---------
Q 016437 162 A-HVELMWL-------LSSATPIGWLNKMI----------QFKE---------KSH--KAGGE-----NVG--------- 198 (389)
Q Consensus 162 e-h~eL~w~-------L~~~~~~~~L~R~~----------~~K~---------k~~--~~~~~-----~~~--------- 198 (389)
+ +.+..-. +.|+++-.+|+.+. .|.. ..+ ..|.. .++
T Consensus 79 ~~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D 158 (492)
T 2cfo_A 79 DLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQD 158 (492)
T ss_dssp HHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEe
Confidence 3 3222211 45888888876531 1111 000 00100 010
Q ss_pred --cccchhhHHHh-hhhhh------------------------cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccc
Q 016437 199 --VALLTYPVLMA-SDILL------------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251 (389)
Q Consensus 199 --~gll~YPvLQA-ADILl------------------------~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~ 251 (389)
-|.+.++.-.. .|.++ .+.|+|.-|+|+..+-..-..|.+.|+
T Consensus 159 ~v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg---------- 228 (492)
T 2cfo_A 159 LVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG---------- 228 (492)
T ss_dssp TTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT----------
T ss_pred cceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC----------
Confidence 13333333333 34444 455577799999999988888888776
Q ss_pred cCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC------CHHHHHHHhhhc
Q 016437 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (389)
Q Consensus 252 ~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D------spe~I~kKI~kA 311 (389)
++.|+-.+. +.|.+. || +|||||+.+ +.|.+ .|+.|..-+...
T Consensus 229 --------~~~P~~~H~---plil~~-~g-~KLSKr~g~----~~l~~~r~~G~~peal~~~l~~l 277 (492)
T 2cfo_A 229 --------ATPPNFAHT---PLILNS-TG-QKLSKRDGV----TSISDFRAMGYLAPALANYMTLL 277 (492)
T ss_dssp --------CCCCEEEEE---CCEECS-SS-SBCCTTSSC----CBHHHHHHTTCCHHHHHHHHHHT
T ss_pred --------CCCceEEEe---eeEECC-CC-CEecccCCc----ccHHHHHHCCCCHHHHHHHHHHh
Confidence 445755554 557786 77 699999843 23322 688888777664
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.62 E-value=1.7e-07 Score=96.97 Aligned_cols=200 Identities=16% Similarity=0.122 Sum_probs=121.1
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-----
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~----- 152 (389)
.+....=.|||.|||||..+++.+|.-... +..+++-|.|... .....+....+..++.++|++++..
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~------~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDL------ERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSC------CSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCc------cccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 466777899999999999999999975544 4456666776642 2234456677788899999999863
Q ss_pred --EEEEcCCchh-hhHHHHH-------HhccCcHHHHhchh----------hHH----HH--H-----H--hhCC-----
Q 016437 153 --SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI----------QFK----EK--S-----H--KAGG----- 194 (389)
Q Consensus 153 --~if~QS~v~e-h~eL~w~-------L~~~~~~~~L~R~~----------~~K----~k--~-----~--~~~~----- 194 (389)
-.|+||+.-+ +.+..-. +.|+++-.+|+.+. .|. +. . + ..|.
T Consensus 88 ~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR 167 (481)
T 2o5r_A 88 DHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVF 167 (481)
T ss_dssp TTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEE
T ss_pred CCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEE
Confidence 2588999422 2222111 34666554443221 010 00 0 0 0010
Q ss_pred ---C-----------------Ccccccch------hhHHHhhhhh---hcCCcEEeecCcchHHHHHHHHHHHHhhhhhc
Q 016437 195 ---E-----------------NVGVALLT------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245 (389)
Q Consensus 195 ---~-----------------~~~~gll~------YPvLQAADIL---l~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg 245 (389)
. ...+|-+. ||..+-|+++ ..+.|+|..|.||..|...-.-+.+.++
T Consensus 168 ~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG---- 243 (481)
T 2o5r_A 168 FKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE---- 243 (481)
T ss_dssp ECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT----
T ss_pred EEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC----
Confidence 0 00111111 5555544443 3578999999999999988888888776
Q ss_pred CccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC------CHHHHHHHhhhc
Q 016437 246 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (389)
Q Consensus 246 ~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D------spe~I~kKI~kA 311 (389)
++.|+..+. +.+.+. +| +||||+..+ ..|.| .|+.|..-+...
T Consensus 244 --------------~~~p~~~H~---plil~~-~G-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~l 292 (481)
T 2o5r_A 244 --------------KAPPVFAHV---STILGP-DG-KKLSKRHGA----TSVEAFRDMGYLPEALVNYLALL 292 (481)
T ss_dssp --------------CCCCEEEEE---CCEECT-TS-SBCCGGGSC----CBHHHHHHHTCCHHHHHHHHHTS
T ss_pred --------------CCCCeEEEE---eeEECC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHHh
Confidence 445665544 445665 67 699999842 23332 577777766654
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.57 E-value=3.4e-07 Score=94.92 Aligned_cols=200 Identities=19% Similarity=0.170 Sum_probs=117.0
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (389)
+.++=..=.|||.+||||+..++.+|+..+. +...++-|-|... .....+....+..++.++||+|+. ..|+
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~------~R~~~~~~~~i~~dl~wlGl~~d~-~~~~ 97 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDV------ERSSQEAVDAILEGMAWLGLDYDE-GPYY 97 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCG------GGCCHHHHHHHHHHHHHTTCCCSE-EEEE
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCc------ccccHHHHHHHHHHHHHcCCCCCC-CCcc
Confidence 3455555577899999999999999987665 4456667777532 223456778899999999999996 4799
Q ss_pred cCCch-hhhHHHH-------HHhccCcHHHHhchhhH----------HHHHHhh----------CC----------C-Cc
Q 016437 157 QSHVR-AHVELMW-------LLSSATPIGWLNKMIQF----------KEKSHKA----------GG----------E-NV 197 (389)
Q Consensus 157 QS~v~-eh~eL~w-------~L~~~~~~~~L~R~~~~----------K~k~~~~----------~~----------~-~~ 197 (389)
||+.- .+.+..- .+.|+++-.+|+.+..- -...+.. +. + .+
T Consensus 98 qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~ 177 (490)
T 4g6z_A 98 QMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTV 177 (490)
T ss_dssp GGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEE
T ss_pred cccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcE
Confidence 99952 2322221 24588988887653210 0000000 00 0 00
Q ss_pred c-----cccch----------------hhHHHhh---hhhhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccC
Q 016437 198 G-----VALLT----------------YPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 253 (389)
Q Consensus 198 ~-----~gll~----------------YPvLQAA---DILl~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~ 253 (389)
. -|.+. ||..+-| |=...+.++|.=|+|...+--.=..|.+.|+
T Consensus 178 ~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG------------ 245 (490)
T 4g6z_A 178 AWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALG------------ 245 (490)
T ss_dssp EEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTT------------
T ss_pred EEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcC------------
Confidence 0 01111 2333333 2233478999999999877665555666665
Q ss_pred CCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC------CCHHHHHHHhhhc
Q 016437 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVIANKIKRC 311 (389)
Q Consensus 254 ~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~------Dspe~I~kKI~kA 311 (389)
++.|+..+. +.|.+- +| +||||.+.. +.|. -.|+.|.+-+...
T Consensus 246 ------~~~P~f~Hl---pLi~~~-~g-~KLSKR~g~----~sl~~~r~~G~~peal~n~l~~l 294 (490)
T 4g6z_A 246 ------GEVPVYAHL---PTVLNE-QG-EKMSKRHGA----MSVMGYRDAGYLPEAVLNYLARL 294 (490)
T ss_dssp ------CCCCEEEEE---CCEECT-TS-SBCCTTTTC----CBHHHHHHTTCCHHHHHHHHHTS
T ss_pred ------CCCCeEEEe---cceeCC-CC-CcccCCCCC----cCHHHHHHCCCCHHHHHHHHHHh
Confidence 556776665 457775 67 799999742 3332 2788888887664
No 45
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.28 E-value=5.9e-06 Score=86.01 Aligned_cols=220 Identities=21% Similarity=0.170 Sum_probs=130.2
Q ss_pred eEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE-----
Q 016437 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS----- 153 (389)
Q Consensus 80 ~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~----- 153 (389)
|+=--=.|||.|||||...|+.+|.-.+. +.++++-|-|...- ....+....+..++..+||+++...
T Consensus 26 rtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~------R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~ 99 (512)
T 4gri_A 26 RVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQS------RYSPEAENDLYSSLKWLGISFDEGPVVGGD 99 (512)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTT------SCCHHHHHHHHHHHHHHTCCCSBBTTTBCT
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCC------cCCHHHHHHHHHHHHHcCCCCCcCCccCCC
Confidence 33333467799999999999999976544 55677778887431 1223456677788888999998633
Q ss_pred --EEEcCCchh-hhHHHH-H------HhccCcHHHHhchhhHH-------------------HHHHh--hC---------
Q 016437 154 --VFVQSHVRA-HVELMW-L------LSSATPIGWLNKMIQFK-------------------EKSHK--AG--------- 193 (389)
Q Consensus 154 --if~QS~v~e-h~eL~w-~------L~~~~~~~~L~R~~~~K-------------------~k~~~--~~--------- 193 (389)
.|+||+..+ |.+..- + +.|+++-.++++...-. +.... .+
T Consensus 100 ~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~ 179 (512)
T 4gri_A 100 YAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKI 179 (512)
T ss_dssp TCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECC
T ss_pred CCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecc
Confidence 579998532 222111 1 45899988776542211 00000 00
Q ss_pred --CCCc-----ccccchh--------hHHHhhhh------------hhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcC
Q 016437 194 --GENV-----GVALLTY--------PVLMASDI------------LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGG 246 (389)
Q Consensus 194 --~~~~-----~~gll~Y--------PvLQAADI------------Ll~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~ 246 (389)
..++ -.|.+.+ +|+.-+|. .+.+.++|.=|+|...+--.=.-|.+.|+
T Consensus 180 ~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg----- 254 (512)
T 4gri_A 180 PLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK----- 254 (512)
T ss_dssp CSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT-----
T ss_pred cccCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC-----
Confidence 0000 0122111 12222222 13478999999999998877777777776
Q ss_pred ccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCC------CCHHHHHHHhhhcccCCCCCcC
Q 016437 247 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVIANKIKRCKTDSSAGLE 320 (389)
Q Consensus 247 ~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~------Dspe~I~kKI~kA~TD~~~~~~ 320 (389)
++.|...+. +.|.+- || +|+||.+.. ..+. =.|+.+..-+...=+
T Consensus 255 -------------~~~P~y~H~---pli~~~-~g-~kLSKR~~~----~~v~~~~~~G~lPeAl~NyLalLGw------- 305 (512)
T 4gri_A 255 -------------WKPPIYCHL---PMVMGN-DG-QKLSKRHGS----TALRQFIEDGYLPEAIINYVTLLGW------- 305 (512)
T ss_dssp -------------CCCCEEEEE---CCCBCT-TS-SBCCTTTSC----CBHHHHHHHTCCHHHHHHHHHHSSB-------
T ss_pred -------------CCCCeEEec---chhccc-cc-cccCccccc----ccHHHHHHcCCChHHHHHHHHHhCC-------
Confidence 566876666 457775 67 699999742 3322 267777766655422
Q ss_pred cCCCCCCchhHHHHHHHHhc
Q 016437 321 FDNLERPECNNLLSIYQLIS 340 (389)
Q Consensus 321 ~~~~~~p~~~nll~i~~~~~ 340 (389)
.++..-++-.+-++.+.|+
T Consensus 306 -s~~~~~Eifs~~eli~~Fd 324 (512)
T 4gri_A 306 -SYDDKREFFSKNDLEQFFS 324 (512)
T ss_dssp -CSSSSCCCCCHHHHHHHCC
T ss_pred -CCcccchhhhHHHHHHHHH
Confidence 2223335566666666664
No 46
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.14 E-value=1.5e-05 Score=83.54 Aligned_cols=176 Identities=19% Similarity=0.177 Sum_probs=97.7
Q ss_pred EEEee--cCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016437 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (389)
Q Consensus 81 i~sGi--qPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 157 (389)
+.+=| .|||.+||||...++.+|...+. +..++.-|-|... .....+.+..+..++.++|++++ .+++|
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~------~R~~~e~~~~I~edL~wLGl~wd--~~~~q 168 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDP------RRVDPEAYDMIPADLEWLGVEWD--ETVIQ 168 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCG------GGCCTTHHHHHHHHHHHHTCCCS--EEEEG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCc------ccccHHHHHHHHHHHHHcCCCCC--CCccc
Confidence 34444 56799999999999999876543 4457777888732 12234567788889999999997 58999
Q ss_pred CCch-hhhHHHHH-------HhccCcHHHHhchhh------HHHH-----HH-----hhCCC--------------Cccc
Q 016437 158 SHVR-AHVELMWL-------LSSATPIGWLNKMIQ------FKEK-----SH-----KAGGE--------------NVGV 199 (389)
Q Consensus 158 S~v~-eh~eL~w~-------L~~~~~~~~L~R~~~------~K~k-----~~-----~~~~~--------------~~~~ 199 (389)
|+.- .+.+..-. +.|+++-.++..... +.+. .. ..|.+ +.++
T Consensus 169 Sdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~ 248 (553)
T 3aii_A 169 SDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAI 248 (553)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGG
T ss_pred ccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCC
Confidence 9863 23222211 347777776642110 1000 00 00100 0010
Q ss_pred ----------------cc--chhhHHH---hhhhhhcCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCc
Q 016437 200 ----------------AL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258 (389)
Q Consensus 200 ----------------gl--l~YPvLQ---AADILl~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~ 258 (389)
|- ..||..+ +.|.-+.+.|+|.-|.|...|-..=.-+...++
T Consensus 249 ~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG----------------- 311 (553)
T 3aii_A 249 RDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG----------------- 311 (553)
T ss_dssp TTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHT-----------------
T ss_pred CCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcC-----------------
Confidence 11 1355444 456666789999999999877666555555554
Q ss_pred cccCCccccCCCCcccccCCCCCCcCCCCC
Q 016437 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (389)
Q Consensus 259 ~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~ 288 (389)
++.|...+. ++| .+ +| .|||||.
T Consensus 312 -~~~P~y~H~---~~L-~~-~g-~KLSKR~ 334 (553)
T 3aii_A 312 -WEPPEFIHY---GRL-KM-DD-VALSTSG 334 (553)
T ss_dssp -CCCCEEECC---CCB-C---------CHH
T ss_pred -CCCCeEEEe---eEE-ec-CC-ceechhh
Confidence 344665544 556 44 67 6999996
No 47
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.90 E-value=8.9e-05 Score=77.79 Aligned_cols=95 Identities=12% Similarity=-0.030 Sum_probs=66.4
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 157 (389)
.+.=-+=.|||.+||||...++.+|...+. +..++.-|-|... .....+....+..++.++||+++. .+++|
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~------~R~~~e~~~~I~edL~wLGl~wde-~~~~q 99 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNP------VKEDIEYVESIKNDVEWLGFHWSG-NVRYS 99 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCG------GGCCHHHHHHHHHHHHHTTCCCSS-SCEEG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCc------hhcCHHHHHHHHHHHHHcCCCCCC-CCeeh
Confidence 344456677899999999999999976554 4567778888742 223446677888999999999964 47999
Q ss_pred CCchh-hhHHHHH-------HhccCcHHHHh
Q 016437 158 SHVRA-HVELMWL-------LSSATPIGWLN 180 (389)
Q Consensus 158 S~v~e-h~eL~w~-------L~~~~~~~~L~ 180 (389)
|+.-+ +-+.+-. +.|+++-.+|.
T Consensus 100 Ser~~~~~~~a~~Li~~G~AY~c~ct~eel~ 130 (553)
T 1qtq_A 100 SDYFDQLHAYAIELINKGLAYVDELTPEQIR 130 (553)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEECCCHHHHH
T ss_pred cccHHHHHHHHHHHHHCCCceecCCCHHHHH
Confidence 98632 3332222 34778777664
No 48
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.74 E-value=0.00056 Score=70.05 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=49.4
Q ss_pred ceEEEeecC--CCcchhhhHHHHHHH--HHHHH--ccCcEEEEE-eecccccC-------CCCHHHH-HHHHHHHHHHHH
Q 016437 79 KRIVSGVQP--TGSIHLGNYLGAIKN--WIALQ--NSYETLFFI-VDLHAITL-------PYDTQQL-SKATRETAAIYL 143 (389)
Q Consensus 79 ~~i~sGiqP--TG~lHLGnylgai~~--~v~lQ--~~~~~~i~I-aDlhAlt~-------~~d~~~i-~~~~~~~~a~~l 143 (389)
+.+++|--| +|.+||||....+.. +.+.+ .|+++++.. .|-|..-. ..++.++ .++...+..++.
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 455666655 799999999887743 33333 377776542 23333211 1234333 345667888999
Q ss_pred HcCCCCCCcEEEEcCC
Q 016437 144 ACGIDNSKASVFVQSH 159 (389)
Q Consensus 144 A~GlDp~k~~if~QS~ 159 (389)
++|++++ ..+..++
T Consensus 84 ~lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 84 LLGIAYD--DFIRTTE 97 (500)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCcccCC
Confidence 9999988 4666776
No 49
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=97.72 E-value=0.00043 Score=71.87 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=49.6
Q ss_pred CceEEEeecC--CCcchhhhHHHHHHH--HHHHHc--cCcEEE-EEeecccccC-------CCCHHHH-HHHHHHHHHHH
Q 016437 78 KKRIVSGVQP--TGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL-------PYDTQQL-SKATRETAAIY 142 (389)
Q Consensus 78 ~~~i~sGiqP--TG~lHLGnylgai~~--~v~lQ~--~~~~~i-~IaDlhAlt~-------~~d~~~i-~~~~~~~~a~~ 142 (389)
+..+++|--| ||.+||||..+++.. +.++++ |+++.+ .-.|-|..-. ..+++++ .+....+.+++
T Consensus 25 ~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 104 (536)
T 4dlp_A 25 EKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMA 104 (536)
T ss_dssp CEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455566554 599999999887642 333332 788755 4455554321 2345444 34566788899
Q ss_pred HHcCCCCCCcEEEEcCC
Q 016437 143 LACGIDNSKASVFVQSH 159 (389)
Q Consensus 143 lA~GlDp~k~~if~QS~ 159 (389)
.++|++++ .++.-++
T Consensus 105 ~~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 105 EVLNSSND--DYIRTSE 119 (536)
T ss_dssp HHTTCCCS--EEEETTS
T ss_pred HHcCCCCC--cceeCCC
Confidence 99999988 3444443
No 50
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.67 E-value=0.00044 Score=75.77 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=65.9
Q ss_pred eEEEeecCCCcchhhhHHHHHHHHHHHHc-cCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcC
Q 016437 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (389)
Q Consensus 80 ~i~sGiqPTG~lHLGnylgai~~~v~lQ~-~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS 158 (389)
+.=.+=.|||.+||||...++.+|..... +..++.-|-|..- .....+....+..++.++||+++. .+++||
T Consensus 68 ~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~------~R~~~e~~~~IledL~wLGl~wde-~~~~qS 140 (851)
T 2hz7_A 68 VTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNP------ELARQEYVDSIADDLKWLGLDWGE-HFYYAS 140 (851)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCT------TTCCHHHHHHHHHHHHHHTCCCTT-CEEEGG
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCc------ccccHHHHHHHHHHHHHcCCCCCC-CcccHh
Confidence 33346678899999999999999976554 4567778888732 223456778888999999999965 489999
Q ss_pred Cch-hhhHHHHH-------HhccCcHHHHh
Q 016437 159 HVR-AHVELMWL-------LSSATPIGWLN 180 (389)
Q Consensus 159 ~v~-eh~eL~w~-------L~~~~~~~~L~ 180 (389)
+.- .+.+..-. +.|+++-.+|.
T Consensus 141 er~d~y~e~a~~LI~~G~AY~c~ct~eel~ 170 (851)
T 2hz7_A 141 DYFDRYYAYAEQLIRQGDAYVESVSPEELS 170 (851)
T ss_dssp GGHHHHHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred hhHHHHHHHHHHHHHCCCcEeecCCHHHHH
Confidence 863 23332221 44788777664
No 51
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.55 E-value=0.0015 Score=66.86 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=50.2
Q ss_pred ceEEEeec--CCCcchhhhHHHHHHH--HHHHH--ccCcEEEE-EeecccccC-------CCCHHH-HHHHHHHHHHHHH
Q 016437 79 KRIVSGVQ--PTGSIHLGNYLGAIKN--WIALQ--NSYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (389)
Q Consensus 79 ~~i~sGiq--PTG~lHLGnylgai~~--~v~lQ--~~~~~~i~-IaDlhAlt~-------~~d~~~-i~~~~~~~~a~~l 143 (389)
+.+++|-- |||.+||||....+.. +.+.+ .|+++.+. =.|-|.+-. ..++.+ ..++...+.+++.
T Consensus 6 ~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45555654 6699999999887743 33443 37777553 234343311 123443 4456778889999
Q ss_pred HcCCCCCCcEEEEcCC
Q 016437 144 ACGIDNSKASVFVQSH 159 (389)
Q Consensus 144 A~GlDp~k~~if~QS~ 159 (389)
++|++++ .++.+++
T Consensus 86 ~lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 86 FLKIEYT--KFIRTTD 99 (497)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCccCCC
Confidence 9999998 4667777
No 52
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=97.48 E-value=0.0021 Score=67.08 Aligned_cols=80 Identities=25% Similarity=0.397 Sum_probs=48.7
Q ss_pred CCceEEEee--cCCCcchhhhHHHHHHH--HHHHH--ccCcEEE-EEeecccccC-------CCCHHHH-HHHHHHHHHH
Q 016437 77 VKKRIVSGV--QPTGSIHLGNYLGAIKN--WIALQ--NSYETLF-FIVDLHAITL-------PYDTQQL-SKATRETAAI 141 (389)
Q Consensus 77 ~~~~i~sGi--qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i-~IaDlhAlt~-------~~d~~~i-~~~~~~~~a~ 141 (389)
++..++++- -|||.+||||...++.. +.+++ .|+++.+ .-.|-|..-. ..+++++ .+....+..+
T Consensus 17 ~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 96 (560)
T 3h99_A 17 AKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTD 96 (560)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 334444444 55599999999987743 22332 2788765 4445554421 2345444 4456678889
Q ss_pred HHHcCCCCCCcEEEEcC
Q 016437 142 YLACGIDNSKASVFVQS 158 (389)
Q Consensus 142 ~lA~GlDp~k~~if~QS 158 (389)
+.++|++++. ++.-+
T Consensus 97 ~~~lgi~~d~--~~~t~ 111 (560)
T 3h99_A 97 FAGFNISYDN--YHSTH 111 (560)
T ss_dssp HHHTTCCCSE--EEESS
T ss_pred HHHcCCCCCC--ceeCC
Confidence 9999999873 44444
No 53
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=97.23 E-value=0.0067 Score=62.40 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=45.2
Q ss_pred eEEEeecCCCcchhhhHHHHHH-----HHHHHHccCcEEEE-Eeecccc-c-C-----CCCHHHH-HHHHHHHHHHHHHc
Q 016437 80 RIVSGVQPTGSIHLGNYLGAIK-----NWIALQNSYETLFF-IVDLHAI-T-L-----PYDTQQL-SKATRETAAIYLAC 145 (389)
Q Consensus 80 ~i~sGiqPTG~lHLGnylgai~-----~~v~lQ~~~~~~i~-IaDlhAl-t-~-----~~d~~~i-~~~~~~~~a~~lA~ 145 (389)
..++|.-|.|.+||||....+. .|.++ .|+++.+. =-|-|.. + . ..++.++ .+++..+..++.++
T Consensus 28 ~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~-~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~L 106 (462)
T 3tqo_A 28 LYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRM-RGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKAL 106 (462)
T ss_dssp EEECCCBTTSCCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCCchhhhHHHHHHHHHHHHHHH-cCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 4467889999999999987663 34443 37887654 2222221 0 0 1244443 44667888899999
Q ss_pred CCCCCC
Q 016437 146 GIDNSK 151 (389)
Q Consensus 146 GlDp~k 151 (389)
|+.++.
T Consensus 107 gI~~d~ 112 (462)
T 3tqo_A 107 RVLSPD 112 (462)
T ss_dssp TCCCCS
T ss_pred CCCCCc
Confidence 998753
No 54
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.15 E-value=0.00028 Score=74.47 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=29.7
Q ss_pred ceEEEeecCCCcchhhhHHHHHH--HHHHHHc--cCcEEE--EEeec
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLF--FIVDL 119 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~--~~v~lQ~--~~~~~i--~IaDl 119 (389)
..-|+|--|+|.+||||..+++. -+.++.+ |++|++ -|.||
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 34478889999999999988772 3444443 788765 57777
No 55
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=97.01 E-value=0.0025 Score=65.36 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=46.8
Q ss_pred eEEEeecCCCcchhhhHHHHHHH--HHHHH--ccCcEEEE--EeecccccC------CCCHHHHH-HHHHHHHHHHHHcC
Q 016437 80 RIVSGVQPTGSIHLGNYLGAIKN--WIALQ--NSYETLFF--IVDLHAITL------PYDTQQLS-KATRETAAIYLACG 146 (389)
Q Consensus 80 ~i~sGiqPTG~lHLGnylgai~~--~v~lQ--~~~~~~i~--IaDlhAlt~------~~d~~~i~-~~~~~~~a~~lA~G 146 (389)
..++|--|.|.+||||...++.. +.++. .|+++.+. +.|+-.-+. ..++.++. +....+.+++.++|
T Consensus 25 ~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~Lg 104 (461)
T 1li5_A 25 MYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALN 104 (461)
T ss_dssp EEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 34455555599999999887732 22332 27887664 455532111 22444443 45667888999999
Q ss_pred CCCCCcEEEEcCC
Q 016437 147 IDNSKASVFVQSH 159 (389)
Q Consensus 147 lDp~k~~if~QS~ 159 (389)
+.+.. .+..+|+
T Consensus 105 I~~~d-~~~r~t~ 116 (461)
T 1li5_A 105 ILRPD-MEPRATH 116 (461)
T ss_dssp CCCCS-BCCBGGG
T ss_pred CCCCc-ccccccc
Confidence 98632 2445665
No 56
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=95.75 E-value=0.0084 Score=63.77 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=28.3
Q ss_pred EEEeecCCCcchhhhHHHHHH--HHHHHHc--cCcEEE--EEeec
Q 016437 81 IVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLF--FIVDL 119 (389)
Q Consensus 81 i~sGiqPTG~lHLGnylgai~--~~v~lQ~--~~~~~i--~IaDl 119 (389)
=|+|--|+|.+|+||..+++. -+.++.+ |++|++ -|.||
T Consensus 124 e~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 124 EHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp ECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred EeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 378999999999999988762 2333332 788765 57887
No 57
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=95.18 E-value=0.025 Score=58.58 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=50.9
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHH--H--HccCcEEE--EEeecccccC-C------------CC-----------H
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKNWIA--L--QNSYETLF--FIVDLHAITL-P------------YD-----------T 128 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~~v~--l--Q~~~~~~i--~IaDlhAlt~-~------------~d-----------~ 128 (389)
.++-+|.-|||.+||||...++..++- . ..++++.| -|-|...... | .+ .
T Consensus 22 yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~~ 101 (523)
T 1irx_A 22 YVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHE 101 (523)
T ss_dssp EEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSSS
T ss_pred EEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhHH
Confidence 455679999999999999999876431 2 13566533 3555542110 0 01 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEcCC
Q 016437 129 QQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (389)
Q Consensus 129 ~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~ 159 (389)
+-..++...+..++.++||+++ +|.||+
T Consensus 102 ~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 102 SYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp SHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 2234577788889999999987 458998
No 58
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=94.91 E-value=0.14 Score=52.70 Aligned_cols=89 Identities=9% Similarity=0.102 Sum_probs=56.0
Q ss_pred CCCCceEEEee-cCCCcchhhhHHHHHH-----HHHHHHccCcEEEEEe-eccccc--C-----CCCHHH-HHHHHHHHH
Q 016437 75 SSVKKRIVSGV-QPTGSIHLGNYLGAIK-----NWIALQNSYETLFFIV-DLHAIT--L-----PYDTQQ-LSKATRETA 139 (389)
Q Consensus 75 ~~~~~~i~sGi-qPTG~lHLGnylgai~-----~~v~lQ~~~~~~i~Ia-DlhAlt--~-----~~d~~~-i~~~~~~~~ 139 (389)
..++..|-|.+ -++|.|||||.++.+. .|.+++ |+++++.-+ |-|.+- . ..++.+ ..++...+.
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~-G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~ 85 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVK-GERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFK 85 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhc-CCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33445666663 6899999999998763 344443 788877544 444332 1 235544 445677888
Q ss_pred HHHHHcCCCCCCcEEEEcCCchhhhHHH
Q 016437 140 AIYLACGIDNSKASVFVQSHVRAHVELM 167 (389)
Q Consensus 140 a~~lA~GlDp~k~~if~QS~v~eh~eL~ 167 (389)
.++.++|++.+. |.-..-++|.+..
T Consensus 86 ~~~~~lgi~~D~---~~~T~~~~~~~~v 110 (542)
T 3u1f_A 86 KCFEQMDYSIDY---FIRTTNEQHKAVV 110 (542)
T ss_dssp HHHHHHTCCCSE---EEETTCHHHHHHH
T ss_pred HHHHHhCCccCc---CccCCCHHHHHHH
Confidence 899999999873 3334445565443
No 59
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=92.47 E-value=0.69 Score=48.16 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=47.0
Q ss_pred cCCCcchhhhHHHHHHH--HHHHHc--cCcEEE-EEeecccccC-------CCCHHHH-HHHHHHHHHHHHHcCCCCCCc
Q 016437 86 QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL-------PYDTQQL-SKATRETAAIYLACGIDNSKA 152 (389)
Q Consensus 86 qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i-~IaDlhAlt~-------~~d~~~i-~~~~~~~~a~~lA~GlDp~k~ 152 (389)
-|+|.+||||..+++.. +.++++ |+++++ +-.|-|..-. ..+++++ .+....+..+|..+|++.+
T Consensus 36 y~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D-- 113 (564)
T 3kfl_A 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMN-- 113 (564)
T ss_dssp ECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCS--
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC--
Confidence 57899999999887632 344433 788755 5556665421 2345444 4456678889999999988
Q ss_pred EEEEcCC
Q 016437 153 SVFVQSH 159 (389)
Q Consensus 153 ~if~QS~ 159 (389)
.++.-++
T Consensus 114 ~~~~t~~ 120 (564)
T 3kfl_A 114 YFIRTTN 120 (564)
T ss_dssp EEEETTS
T ss_pred ccccCCC
Confidence 3444443
No 60
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=91.20 E-value=0.74 Score=49.57 Aligned_cols=85 Identities=14% Similarity=0.273 Sum_probs=53.7
Q ss_pred CceEEEee-cCCCcchhhhHHH-HHH--HHHHHHc--cCcEEEE-EeecccccC-------CCCHHHH-HHHHHHHHHHH
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLG-AIK--NWIALQN--SYETLFF-IVDLHAITL-------PYDTQQL-SKATRETAAIY 142 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylg-ai~--~~v~lQ~--~~~~~i~-IaDlhAlt~-------~~d~~~i-~~~~~~~~a~~ 142 (389)
+..|.+++ -|+|.+||||.++ .+. -+.+++. |+++++. =-|-|.+-. ..++.++ .++...+..+|
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45666666 6789999999998 442 2444443 7888664 445554421 2355444 34667888899
Q ss_pred HHcCCCCCCcEEEEcCCchhhhH
Q 016437 143 LACGIDNSKASVFVQSHVRAHVE 165 (389)
Q Consensus 143 lA~GlDp~k~~if~QS~v~eh~e 165 (389)
.++|++++. |.-..-++|.+
T Consensus 83 ~~lgis~D~---~~rT~d~~~~~ 102 (722)
T 1rqg_A 83 QRAKISFDF---FGRTELPIHYK 102 (722)
T ss_dssp HHHTCCCSE---EEETTSHHHHH
T ss_pred HHhCCCCCC---CeeCCCHHHHH
Confidence 999999884 33344445544
No 61
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=89.13 E-value=1.3 Score=45.31 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=44.8
Q ss_pred cCCCcchhhhHHHHHHH--HHHHH--ccCcEEEE-EeecccccC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCCc
Q 016437 86 QPTGSIHLGNYLGAIKN--WIALQ--NSYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSKA 152 (389)
Q Consensus 86 qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i~-IaDlhAlt~-------~~d~~~-i~~~~~~~~a~~lA~GlDp~k~ 152 (389)
-|+|.+||||....+.. +.+.+ .|+++.+. =.|-|.+-. ..++.+ ..++...+..++.++|++++
T Consensus 22 ~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d-- 99 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD-- 99 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--
Confidence 35799999999887632 33333 37887653 233333211 123444 34466788889999999887
Q ss_pred EEEEcCC
Q 016437 153 SVFVQSH 159 (389)
Q Consensus 153 ~if~QS~ 159 (389)
.++..++
T Consensus 100 ~~~~t~~ 106 (524)
T 2x1l_A 100 RFIRTSD 106 (524)
T ss_dssp EEEETTS
T ss_pred CCeecCC
Confidence 4666666
No 62
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=89.12 E-value=0.37 Score=49.55 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=31.5
Q ss_pred CCcEEeecCcchHHHH---HHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCC
Q 016437 216 QSDFVPVGEDQKQHLE---LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (389)
Q Consensus 216 ~adiVpvG~DQ~qhle---LtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~ 292 (389)
-+|+...|.||..++. .++-++. | ++.|..++.. ..+ .. +| +|||||. +
T Consensus 278 p~d~~~~G~D~~~fh~~~~~a~l~~~------g--------------~~~~~~v~~h--g~l-~~-~G-~KMSKSl---G 329 (542)
T 3u1f_A 278 PADVHVIGKDILKFHAIYWPAFLLSA------G--------------LPLPKKIVAH--GWW-TK-DR-KKISKSL---G 329 (542)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHHH------T--------------CCCCSCEEEE--CCC-EE-TT-BCCBTTT---T
T ss_pred cceEEEecccccccccchhHHHHHhh------c--------------ccccceeccc--cce-ec-CC-ceecccc---C
Confidence 4689999999976532 2222221 2 2335554432 223 22 56 7999997 7
Q ss_pred CcccC
Q 016437 293 SRINL 297 (389)
Q Consensus 293 s~I~L 297 (389)
|.|..
T Consensus 330 Nvi~p 334 (542)
T 3u1f_A 330 NVFDP 334 (542)
T ss_dssp BCCCH
T ss_pred CCCCh
Confidence 88853
No 63
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=88.54 E-value=0.31 Score=49.97 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=32.2
Q ss_pred cCCcEEeecCcchHH-HHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQH-LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (389)
Q Consensus 215 ~~adiVpvG~DQ~qh-leLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s 293 (389)
+.+|+..+|.||... ..+-.-++..+ | ++.|..++.. ..|.. +| +|||||. +|
T Consensus 264 ~p~di~~~G~D~~~fh~~~~~a~l~~~----g--------------~~~~~~v~~h--G~v~~--~G-~KMSKS~---GN 317 (524)
T 2x1l_A 264 WPADLHMIGKDIIRFHTVYWPAFLMSA----G--------------LPLPKRIFAH--GWLLN--RG-EKMSKSI---GN 317 (524)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHHH----T--------------CCCCSCEEEE--CCEEE--CS-CSEETTT---EE
T ss_pred CCCeEEEEeechhHhHHHHHHHHHHHC----C--------------CCCCcEEEEC--cEEEe--CC-cccCCcC---CC
Confidence 458999999999852 22211122222 2 2224333221 23332 56 7999997 78
Q ss_pred cccCC
Q 016437 294 RINLL 298 (389)
Q Consensus 294 ~I~L~ 298 (389)
.|.+.
T Consensus 318 ~v~p~ 322 (524)
T 2x1l_A 318 VVDPV 322 (524)
T ss_dssp SSCHH
T ss_pred CCCHH
Confidence 88654
No 64
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=88.22 E-value=0.37 Score=50.22 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=33.5
Q ss_pred cCCcEEeecCcchHHHH-H--HHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQHLE-L--TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (389)
Q Consensus 215 ~~adiVpvG~DQ~qhle-L--tRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~ 291 (389)
+.+|+..+|.||..++. + ++-++ .| ++.|..++.. ..+ .. +| +|||||.
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~a------~g--------------~~~~~~v~~h--g~v-~~-~G-~KMSKS~--- 344 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMS------AE--------------LPLPERLVSH--GWW-TK-DH-KKISKSL--- 344 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHH------TT--------------CCCCSCEEEE--CCE-EE-TT-EECCTTT---
T ss_pred CccceEEEeecccchHHHHHHHHHHh------CC--------------CCCCcEEEEc--ccE-ee-CC-ccccccC---
Confidence 35789999999987422 2 22222 12 3345544432 345 33 67 6999997
Q ss_pred CCcccCC
Q 016437 292 QSRINLL 298 (389)
Q Consensus 292 ~s~I~L~ 298 (389)
||.|.+.
T Consensus 345 GNvV~p~ 351 (564)
T 3kfl_A 345 GNAFDPV 351 (564)
T ss_dssp TCCCCHH
T ss_pred CCCCCHH
Confidence 7888643
No 65
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=87.07 E-value=0.58 Score=50.81 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=35.8
Q ss_pred cCCcEEeecCcchH-HHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (389)
Q Consensus 215 ~~adiVpvG~DQ~q-hleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s 293 (389)
+-+|+..+|.||.. |+...+-...-+ ++. .+.|..++.. ..+.. +| +|||||. +|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~---~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCG-------------GGSCCEEEEE--CCEEE--TT-BCCCTTT---TC
T ss_pred CCceEEeecccccccHHHHHHHHHHHH---cCc-------------cccccEEEEE--eEEEe--CC-eehhhcC---CC
Confidence 56899999999975 777653322221 221 1224444331 23332 66 7999997 78
Q ss_pred cccCCC
Q 016437 294 RINLLD 299 (389)
Q Consensus 294 ~I~L~D 299 (389)
.|.+.|
T Consensus 658 vv~p~d 663 (810)
T 1wkb_A 658 VLNFID 663 (810)
T ss_dssp CCBHHH
T ss_pred cCCHHH
Confidence 886543
No 66
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=86.00 E-value=0.18 Score=51.76 Aligned_cols=40 Identities=25% Similarity=0.501 Sum_probs=27.8
Q ss_pred EEeecCCCcchhhhHHHHHH--HHHHHHc--cCcE--EEEEeeccc
Q 016437 82 VSGVQPTGSIHLGNYLGAIK--NWIALQN--SYET--LFFIVDLHA 121 (389)
Q Consensus 82 ~sGiqPTG~lHLGnylgai~--~~v~lQ~--~~~~--~i~IaDlhA 121 (389)
|+.--|||.+|+||..+++. -..++.+ |+++ .+-|.||=.
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~ 81 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGN 81 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHH
T ss_pred eCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccH
Confidence 67788999999999988763 2333333 6775 457888633
No 67
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=85.32 E-value=0.65 Score=51.63 Aligned_cols=71 Identities=25% Similarity=0.264 Sum_probs=40.8
Q ss_pred cCCcEEeecCcchH-HHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (389)
Q Consensus 215 ~~adiVpvG~DQ~q-hleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s 293 (389)
|-+|+...|.||.. |+...+-...-+ ++. -+.|..++.. ..+.. +| +|||||. +|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~---~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCS-------------TTSCCCEEEE--CCEEE--SS-SCCCTTT---CC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHH---cCc-------------ccccceEEEe--eEEee--CC-EEccccc---cC
Confidence 56899999999964 766653222211 221 1224444332 23432 66 7999997 78
Q ss_pred cccCCC-----CHHHHHHHhh
Q 016437 294 RINLLD-----PKDVIANKIK 309 (389)
Q Consensus 294 ~I~L~D-----spe~I~kKI~ 309 (389)
.|.+.| .+|.++==++
T Consensus 658 vv~p~d~i~~yGaDalR~~ll 678 (967)
T 1wz2_A 658 VLNFIDAIEENGADVVRLYIM 678 (967)
T ss_dssp CCBHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHhChHHHHHHHH
Confidence 886543 4555554444
No 68
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=83.72 E-value=1.2 Score=49.24 Aligned_cols=80 Identities=28% Similarity=0.268 Sum_probs=43.5
Q ss_pred hcCCcEEeecCcch---HHHHHHHHHHHHhhhhhcCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCcCCCCCC
Q 016437 214 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAP 289 (389)
Q Consensus 214 l~~adiVpvG~DQ~---qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P-~~ii~~~~~~lpgL~dg~~KMSKS~~ 289 (389)
.|-+|+...|.||. .|-.+...++ + +|. .| ..++.. .++... +| +|||||.
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~--~---~g~---------------~Pfk~v~~h--G~V~d~-~G-~KMSKSl- 600 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVA--T---RGV---------------SPYKFLLSH--GFVMDG-EG-KKMSKSL- 600 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHH--H---HSS---------------CSBSEEEEE--CCEECT-TS-CCCCSSS-
T ss_pred CCCceEEEEEecccccHHHHHHHHHHH--h---hCC---------------CcccceeEe--eeEEcC-CC-cCccccc-
Confidence 36689999999997 3444444444 1 231 12 222221 344432 56 7999997
Q ss_pred CCCCcccCCC-----CHHHHHHHhhhcccCCCCCcCcC
Q 016437 290 SDQSRINLLD-----PKDVIANKIKRCKTDSSAGLEFD 322 (389)
Q Consensus 290 ~~~s~I~L~D-----spe~I~kKI~kA~TD~~~~~~~~ 322 (389)
+|.|.+.| .+|.++-=+.. ++....+.|+
T Consensus 601 --GNvV~P~dvi~~yGaDalR~~lls--~~~~~D~~fs 634 (917)
T 1ffy_A 601 --GNVIVPDQVVKQKGADIARLWVSS--TDYLADVRIS 634 (917)
T ss_dssp --SCCCCHHHHHHHTCHHHHHHHHHT--SCTTSCEECC
T ss_pred --CCcCChHHHHHhCCHHHHHHHHhc--cCCCCCcccC
Confidence 78885433 33444433333 4444444444
No 69
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=83.49 E-value=4.1 Score=40.63 Aligned_cols=79 Identities=15% Similarity=0.040 Sum_probs=49.1
Q ss_pred ceEEEeecCCCcchhhhHHHHHHH--HHHHH--ccCcEEE-EEeecccccC-------CCCHHH-HHHHHHHHHHHHHHc
Q 016437 79 KRIVSGVQPTGSIHLGNYLGAIKN--WIALQ--NSYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYLAC 145 (389)
Q Consensus 79 ~~i~sGiqPTG~lHLGnylgai~~--~v~lQ--~~~~~~i-~IaDlhAlt~-------~~d~~~-i~~~~~~~~a~~lA~ 145 (389)
...++|.-|.|.+||||..+++.. +.+++ .|+++.+ .-.|-|..-. ..++.+ ..++...+.+++.++
T Consensus 41 ~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~L 120 (414)
T 3c8z_A 41 TMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAAL 120 (414)
T ss_dssp EEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 345667777799999999887632 22332 2788755 4455554211 124433 344567788899999
Q ss_pred CCC-CCCcEEEEcCC
Q 016437 146 GID-NSKASVFVQSH 159 (389)
Q Consensus 146 GlD-p~k~~if~QS~ 159 (389)
|+. ++ .++..|+
T Consensus 121 gi~~~d--~~~r~t~ 133 (414)
T 3c8z_A 121 RVLPPH--DYVAATD 133 (414)
T ss_dssp TCCCCS--EEEEGGG
T ss_pred CCCCCc--ceecccc
Confidence 998 65 3555555
No 70
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=82.63 E-value=6.1 Score=40.88 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=45.3
Q ss_pred eEEEeecCCCcchhhhHHHHHH-----HHHHHHccCcEEEE--Eeec---------cc--ccC-----CCCHHH-HHHHH
Q 016437 80 RIVSGVQPTGSIHLGNYLGAIK-----NWIALQNSYETLFF--IVDL---------HA--ITL-----PYDTQQ-LSKAT 135 (389)
Q Consensus 80 ~i~sGiqPTG~lHLGnylgai~-----~~v~lQ~~~~~~i~--IaDl---------hA--lt~-----~~d~~~-i~~~~ 135 (389)
..++|.-|.|.+||||....+. .|.+++ |+++.|. |.|+ |. +.. ..++.+ ..+++
T Consensus 45 ~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~-Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~ 123 (501)
T 3sp1_A 45 VYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFT 123 (501)
T ss_dssp EEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEBCSCCC-------------------CCHHHHHHHHH
T ss_pred EEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHc-CCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 3445766669999999987652 344433 7998876 4444 21 221 124544 44567
Q ss_pred HHHHHHHHHcCCCCCC
Q 016437 136 RETAAIYLACGIDNSK 151 (389)
Q Consensus 136 ~~~~a~~lA~GlDp~k 151 (389)
..+..++.++|+.++.
T Consensus 124 ~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 124 EAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHcCCCCCC
Confidence 7888999999998774
No 71
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=82.48 E-value=0.45 Score=47.71 Aligned_cols=90 Identities=22% Similarity=0.187 Sum_probs=38.5
Q ss_pred HhhhhhhcCCcEEeecCcchH-HHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCC
Q 016437 208 MASDILLYQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (389)
Q Consensus 208 QAADILl~~adiVpvG~DQ~q-hleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSK 286 (389)
|+...+-...|+..+|.|+.. |++...-...-+ +|.. +-+..++.. ..| .+ +| +||||
T Consensus 236 ~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~---~g~~-------------~~~~~~~h~--g~v-~~-~G-~KMSK 294 (414)
T 3c8z_A 236 IALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESV---TGER-------------RFARHYVHT--GMI-GW-DG-HKMSK 294 (414)
T ss_dssp HHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHH---HCCS-------------CSEEEEEEE--CCB-C----------
T ss_pred HHHHhcCCCceEEEeccccccHHHHHHHHHHHHh---cCCC-------------CcCeEEEEc--CEE-ec-CC-eEccc
Confidence 344444345789999999887 777654444433 2311 112223321 122 23 66 69999
Q ss_pred CCCCCCCcccCCC------CHHHHHHHhhhcccCCCCCcCcCC
Q 016437 287 SAPSDQSRINLLD------PKDVIANKIKRCKTDSSAGLEFDN 323 (389)
Q Consensus 287 S~~~~~s~I~L~D------spe~I~kKI~kA~TD~~~~~~~~~ 323 (389)
|. +|.|.+.| .++.++-=+.+ +.....+.|+.
T Consensus 295 S~---GN~v~~~~ll~~g~g~D~lR~~ll~--~~~~~d~~fs~ 332 (414)
T 3c8z_A 295 SR---GNLVLVSQLRAQGVDPSAIRLGLFS--GHYREDRFWSN 332 (414)
T ss_dssp --------CBHHHHHHTTCCHHHHHHHHHT--SCTTSCBCCCH
T ss_pred cc---CCcCCHHHHhhccCCcchheeEEEe--cCcCCCCCcCH
Confidence 97 68886532 34555544444 44444455543
No 72
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=82.48 E-value=4.1 Score=44.94 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=46.9
Q ss_pred CceEEEee-cCCCcchhhhHHHHHH-----HHHHHHccCcEEEE-EeecccccC-------CCCHHH-HHHHHHHHHHHH
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIK-----NWIALQNSYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIY 142 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~-----~~v~lQ~~~~~~i~-IaDlhAlt~-------~~d~~~-i~~~~~~~~a~~ 142 (389)
+..|++++ -|||.+||||.++.+. +|.+++ |+++.+. =-|-|.+-. ..++.+ ..+++..+..++
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~-G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l 132 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRML-GKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQL 132 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHT-TCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHc-CCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45677776 7789999999988663 333333 7887663 345555421 124433 344667788899
Q ss_pred HHcCCCCC
Q 016437 143 LACGIDNS 150 (389)
Q Consensus 143 lA~GlDp~ 150 (389)
.++|+..+
T Consensus 133 ~~LGis~D 140 (880)
T 4arc_A 133 KMLGFGYD 140 (880)
T ss_dssp HHTTCCCC
T ss_pred HHhCCCcC
Confidence 99998766
No 73
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=80.63 E-value=1.1 Score=49.25 Aligned_cols=59 Identities=31% Similarity=0.371 Sum_probs=37.1
Q ss_pred cCCcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCC-c-cccCCCCcccccCCCCCCcCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (389)
Q Consensus 215 ~~adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P-~-~ii~~~~~~lpgL~dg~~KMSKS~~~~~ 292 (389)
|-+|+...|.||.. .=.+|.++.... ..|. .| . .+++ ..+... +| +|||||. +
T Consensus 480 ~P~d~~v~G~Dii~-~W~a~~~~~~~~-~~g~---------------~Pfk~v~~h---G~vld~-~G-~KMSKSl---G 534 (862)
T 1gax_A 480 YPGDVLVTGYDILF-LWVSRMEVSGYH-FMGE---------------RPFKTVLLH---GLVLDE-KG-QKMSKSK---G 534 (862)
T ss_dssp CSBSCEEEEGGGTT-TTHHHHHHHHHH-HSSS---------------CSBSEEEEE---CCEECT-TS-CBCCTTT---T
T ss_pred CCceEEecCccccc-cHHHHHHHHHHH-hcCC---------------CcccEEEEe---eeEEcC-CC-CCccccC---C
Confidence 56899999999975 445777766542 2231 13 2 2332 345443 67 7999997 7
Q ss_pred CcccCC
Q 016437 293 SRINLL 298 (389)
Q Consensus 293 s~I~L~ 298 (389)
|.|.+.
T Consensus 535 NvIdP~ 540 (862)
T 1gax_A 535 NVIDPL 540 (862)
T ss_dssp CCCCHH
T ss_pred CCCCHH
Confidence 888543
No 74
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=77.56 E-value=1.1 Score=48.89 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=38.1
Q ss_pred cCCcEEeecCcchH-HHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 016437 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (389)
Q Consensus 215 ~~adiVpvG~DQ~q-hleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s 293 (389)
+-+|+...|.||.. |+.....+..-+ +|.. .+..++.. ..+... +| +|||||. +|
T Consensus 543 ~P~dl~~~G~D~~r~w~~~~~~~~~~~---~~~~--------------pf~~v~~h--g~vl~~-~G-~KMSKS~---GN 598 (821)
T 1ile_A 543 FPADFIAEGIDQTRGWFNSLHQLGVML---FGSI--------------AFKNVICH--GLILDE-KG-QKMSKSK---GN 598 (821)
T ss_dssp SSBSBEEEEGGGGGTHHHHHHHHHHHH---HSSC--------------SBSEEEEE--CCEECT-TS-SCCCTTT---TC
T ss_pred CCcccccchhhhhccHHHHHHHHHHHh---cCCC--------------CcceEEEE--eeEECC-CC-CCCCccC---CC
Confidence 56899999999974 433222222222 1211 12222221 234443 66 7999997 78
Q ss_pred cccCCC-----CHHHHHHHhhh
Q 016437 294 RINLLD-----PKDVIANKIKR 310 (389)
Q Consensus 294 ~I~L~D-----spe~I~kKI~k 310 (389)
.|.+.| .+|.++==+..
T Consensus 599 vV~p~dli~~yGaDalR~~ll~ 620 (821)
T 1ile_A 599 VVDPWDIIRKFGADALRWYIYV 620 (821)
T ss_dssp CCCHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCHHHHHHHHHh
Confidence 886533 44555444444
No 75
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=75.17 E-value=4.9 Score=44.16 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=44.6
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHHc--cCcEEEE-Eeeccccc------------C--CCCH---------
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAIT------------L--PYDT--------- 128 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i~-IaDlhAlt------------~--~~d~--------- 128 (389)
+..|++|. -|||.||+||.++.+.+ +.+.+. |+++.+. =-|-|.+- + +.+.
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~ 114 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERV 114 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHH
Confidence 46667764 67899999999876532 333333 7887664 45667651 1 1111
Q ss_pred -HHHHHHHHHHHHHHHHcCCCCC
Q 016437 129 -QQLSKATRETAAIYLACGIDNS 150 (389)
Q Consensus 129 -~~i~~~~~~~~a~~lA~GlDp~ 150 (389)
+-..++...+..++..+|+..+
T Consensus 115 ~~~~~~~~~~~~~q~~rlG~s~D 137 (862)
T 1gax_A 115 WQWKEESGGTILKQLKRLGASAD 137 (862)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhCcccc
Confidence 1134455677788888896444
No 76
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=75.11 E-value=1.9 Score=44.50 Aligned_cols=82 Identities=24% Similarity=0.282 Sum_probs=39.4
Q ss_pred CCcEEeecCcchH---HHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCC-CCCCcCCCCCCCC
Q 016437 216 QSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKMSKSAPSD 291 (389)
Q Consensus 216 ~adiVpvG~DQ~q---hleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~-dg~~KMSKS~~~~ 291 (389)
..++-++|.|+.. ......+|+. ..+| .+.|..++. ..|.. . +| +|||||.
T Consensus 230 ~~~vd~~G~Dh~~~h~s~~~~~~i~~---~alG--------------~~~p~~~h~---~~i~~-~g~g-~KmSKs~--- 284 (523)
T 1irx_A 230 GVDFEPAGKDHLVAGSSYDTGKEIIK---EVYG--------------KEAPLSLMY---EFVGI-KGQK-GKMSGSK--- 284 (523)
T ss_dssp CCCBCCEEHHHHSTTSHHHHHHHHHH---HHHC--------------CCCCBCCEE---CCEEE-SCC------------
T ss_pred CCCCcCCCcCccCCCcchhhHHHHHH---HHhC--------------CCCCeEEEE---EEEEe-CCCC-CCCCCcC---
Confidence 4444588999887 2334466763 1344 234544443 33433 2 35 7999998
Q ss_pred CCcccCCC-----CHHHHHHHhhhcccCCCCCcCcCCC
Q 016437 292 QSRINLLD-----PKDVIANKIKRCKTDSSAGLEFDNL 324 (389)
Q Consensus 292 ~s~I~L~D-----spe~I~kKI~kA~TD~~~~~~~~~~ 324 (389)
+|.|.+.| .|+.++.=+.+. .....+.|+..
T Consensus 285 Gn~i~~~~~~~~~~pdalR~~l~~~--~~~~~~~fs~~ 320 (523)
T 1irx_A 285 GNVILLSDLYEVLEPGLVRFIYARH--RPNKEIKIDLG 320 (523)
T ss_dssp -CCCCHHHHHTTSCHHHHHHHHHSS--CTTSCEEECCS
T ss_pred CCCCCHHHHHHHcCHHHHHHHHHhc--CCCCCceeCcc
Confidence 56665443 788888777653 44444555544
No 77
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=71.31 E-value=2 Score=44.58 Aligned_cols=66 Identities=21% Similarity=0.142 Sum_probs=29.5
Q ss_pred HHhhhhhhcCCcEEeecCcc-hHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCC
Q 016437 207 LMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMS 285 (389)
Q Consensus 207 LQAADILl~~adiVpvG~DQ-~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMS 285 (389)
-|+...|--..|+-.+|.|. .+|+|--.-...-.+ |.. | +...+.. ..| .+ +| +|||
T Consensus 244 am~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~---g~~------------~--~~~w~H~--g~v-~~-~G-~KMS 301 (501)
T 3sp1_A 244 AMNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFL---NKK------------W--CDVFVHG--EFL-IM-DY-NKMS 301 (501)
T ss_dssp HHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHH---TSC------------C--CSEEEEE--CCE-EC-C------
T ss_pred HHHHHHcCCCceEEeeccccccchHHHHHHHHHHcc---CCC------------C--CeEEEEe--eeE-ee-CC-eEcc
Confidence 34555555567999999996 567776544444433 211 1 2222221 223 23 67 7999
Q ss_pred CCCCCCCCcccC
Q 016437 286 KSAPSDQSRINL 297 (389)
Q Consensus 286 KS~~~~~s~I~L 297 (389)
||. +|.|.+
T Consensus 302 KSl---GN~it~ 310 (501)
T 3sp1_A 302 KSR---GNFITV 310 (501)
T ss_dssp --------CCCH
T ss_pred ccC---CCcCCH
Confidence 997 677754
No 78
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=69.54 E-value=5.5 Score=43.11 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=27.6
Q ss_pred ceEEEee-cCCCcchhhhHHHHHHH--HHHHHc--cCcEEEEE-eecccc
Q 016437 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (389)
Q Consensus 79 ~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i~I-aDlhAl 122 (389)
..|.+|. -|+|.+||||.++.+.. +.+++. |+++.+.. -|-|.+
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence 4555554 56899999999987632 333332 78876643 355544
No 79
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=68.07 E-value=7.1 Score=43.04 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=21.7
Q ss_pred hcCCcEEeecCcc-hHHHHHHHHHHHHhh
Q 016437 214 LYQSDFVPVGEDQ-KQHLELTRELAERVN 241 (389)
Q Consensus 214 l~~adiVpvG~DQ-~qhleLtRdiA~rfN 241 (389)
.|-+|+-.+|.|| .-|+-.+|-+...+.
T Consensus 541 ~~PvD~yigG~EHailHllyaRf~~~~L~ 569 (880)
T 4arc_A 541 WLPVDIYIGGIEHAIMHLLYFRFFHKLMR 569 (880)
T ss_dssp HCSEEEEECCGGGTTTHHHHHHHHHHHHH
T ss_pred cCCceEeecchhhHHHHHHHHHHHHHHHH
Confidence 4578999999999 679988886655443
No 80
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=65.97 E-value=6.5 Score=43.48 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=46.4
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHHc--cCcEEE-EEeecccccC----------CC--CHHHHH-------
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL----------PY--DTQQLS------- 132 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ~--~~~~~i-~IaDlhAlt~----------~~--d~~~i~------- 132 (389)
++.+.+|. -|||.+||||.+..+.+ +.+.+. |+++.+ .=-|-|.+-. +. .+++.+
T Consensus 49 ~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~ 128 (917)
T 1ffy_A 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFA 128 (917)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHH
T ss_pred ceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHH
Confidence 46777777 77999999999886632 334433 788755 4557777632 11 233332
Q ss_pred -HHHHHHHHHHHHcCC--CCCC
Q 016437 133 -KATRETAAIYLACGI--DNSK 151 (389)
Q Consensus 133 -~~~~~~~a~~lA~Gl--Dp~k 151 (389)
+++..+..++..+|+ |.++
T Consensus 129 ~~~~~~~~~~~~rlG~~~Dwd~ 150 (917)
T 1ffy_A 129 LEQIELQKKDFRRLGVRGDFND 150 (917)
T ss_dssp HHHHHHHHHHHHTTTCCSCTTS
T ss_pred HHHHHHHHHHHHHhCeEEccCC
Confidence 234456677888898 5665
No 81
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=64.16 E-value=7 Score=42.98 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=20.4
Q ss_pred cCCcEEeecCcc-hHHHHHHHHHHHH
Q 016437 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (389)
Q Consensus 215 ~~adiVpvG~DQ-~qhleLtRdiA~r 239 (389)
|-+|+...|.|| .-|+-.+|-+..-
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~ 555 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKF 555 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHH
Confidence 569999999999 7888877776653
No 82
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=63.42 E-value=11 Score=41.40 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=45.4
Q ss_pred CceEEEee-cCCCcchhhhHHHHHH-----HHHHHHccCcEEEE-EeecccccC-------CCCHH-HHHHHHHHHHHHH
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIK-----NWIALQNSYETLFF-IVDLHAITL-------PYDTQ-QLSKATRETAAIY 142 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~-----~~v~lQ~~~~~~i~-IaDlhAlt~-------~~d~~-~i~~~~~~~~a~~ 142 (389)
+..+++|+ -|+|.+||||.++.+. +|.+++ |+++.+. =-|-|.+-. ..++. -..+++..+..++
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~-G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~ 112 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQ-GYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESL 112 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHH-TCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhc-CCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 35677774 5679999999988663 343433 7887653 334444321 12333 3445677888899
Q ss_pred HHcCCCCC
Q 016437 143 LACGIDNS 150 (389)
Q Consensus 143 lA~GlDp~ 150 (389)
..+|+..+
T Consensus 113 ~~LGi~~D 120 (878)
T 2v0c_A 113 RLMGILYD 120 (878)
T ss_dssp HHTTCCCC
T ss_pred HHhCCccC
Confidence 99998665
No 83
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=57.68 E-value=6.6 Score=41.42 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=28.2
Q ss_pred EEeecCCCcchhhhHHHHHH--HHHHHHc--cCcEEE--EEeec
Q 016437 82 VSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLF--FIVDL 119 (389)
Q Consensus 82 ~sGiqPTG~lHLGnylgai~--~~v~lQ~--~~~~~i--~IaDl 119 (389)
|+|--|+|.+|+||..+++. -+.++.+ |++|+. -|.||
T Consensus 149 ~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred ecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 78999999999999988772 3444443 788754 58884
No 84
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=57.48 E-value=44 Score=31.61 Aligned_cols=80 Identities=14% Similarity=0.255 Sum_probs=58.0
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHHccC-cEEEEEeecccccC----CCCHHHHHHH--------HHHHHHHHHH
Q 016437 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKA--------TRETAAIYLA 144 (389)
Q Consensus 78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~-~~~i~IaDlhAlt~----~~d~~~i~~~--------~~~~~a~~lA 144 (389)
...++.||-|=-.-|=+.++-.+..|. +..+ +|-|+++|.++--+ ..++.+.++. .+.+...|.+
T Consensus 29 g~HallGISpgNsyFs~d~L~~Li~Wa--~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~~ 106 (257)
T 3oqi_A 29 RRHVLVGISPFNSRFSEDYIHRLIAWA--VREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALEA 106 (257)
T ss_dssp TCEEEEEECTTSTTCCHHHHHHHHHHH--HHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999998999999999999995 5555 48999999866543 3344433322 2355567777
Q ss_pred cCCCCCCcEEEEcCCch
Q 016437 145 CGIDNSKASVFVQSHVR 161 (389)
Q Consensus 145 ~GlDp~k~~if~QS~v~ 161 (389)
+|++++ .++.=||+.
T Consensus 107 ~g~~~~--~v~~~Sd~~ 121 (257)
T 3oqi_A 107 HGGNPE--DIHTFSDFA 121 (257)
T ss_dssp HTCCTT--CEEETTTTT
T ss_pred cCCCcc--cceeHHHhh
Confidence 899887 566668873
No 85
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=55.01 E-value=5.8 Score=43.09 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=30.1
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHH--ccCcEEE-EEeecccc
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQ--NSYETLF-FIVDLHAI 122 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i-~IaDlhAl 122 (389)
+..+++|. -|||.+||||.++.+.+ +.+.+ .|+++.+ .=-|-|.+
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence 45667777 78999999999886532 33333 2788755 45566665
No 86
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=52.14 E-value=9.2 Score=39.02 Aligned_cols=62 Identities=26% Similarity=0.160 Sum_probs=34.4
Q ss_pred CCcEE--eecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCC-CcCCCCCCCCC
Q 016437 216 QSDFV--PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQ 292 (389)
Q Consensus 216 ~adiV--pvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~-~KMSKS~~~~~ 292 (389)
+.|.+ .+|.||..|+..-..+++.++. ..|..-+... .++.-..||. .|||||. +
T Consensus 234 ~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~------------------~~~~~~h~~~-g~V~l~~dG~~~KMSKr~---G 291 (464)
T 3fnr_A 234 GYGKCINIWGADHHGYIPRMKAAMEFLGF------------------DSNNLEIILA-QMVSLLKDGEPYKMSKRA---G 291 (464)
T ss_dssp SCSEEEEEEEGGGGGGHHHHHHHHHTTTC------------------CGGGEEEEEE-CCEEEEETTEECCC---C---C
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHHHcCC------------------CccceEEEEe-eeEEecCCCcccCCcCcC---C
Confidence 35655 6999999999987777777662 1122111111 2231113664 5999997 7
Q ss_pred CcccCCC
Q 016437 293 SRINLLD 299 (389)
Q Consensus 293 s~I~L~D 299 (389)
|.|.+.|
T Consensus 292 n~v~l~d 298 (464)
T 3fnr_A 292 NFILMSD 298 (464)
T ss_dssp SSCBHHH
T ss_pred CCCCHHH
Confidence 8887644
No 87
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=43.61 E-value=7.9 Score=42.94 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=29.6
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHH--ccCcEEEE-Eeecccc
Q 016437 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQ--NSYETLFF-IVDLHAI 122 (389)
Q Consensus 78 ~~~i~sGi-qPTG~lHLGnylgai~~--~v~lQ--~~~~~~i~-IaDlhAl 122 (389)
+..++.|. -|||.||+||.++.+.+ +.+.+ .|+++.+. ==|-|.+
T Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~Gl 85 (967)
T 1wz2_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (967)
T ss_dssp CCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSS
T ss_pred cEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCc
Confidence 57788887 67899999999876532 33333 37787553 3355544
No 88
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=38.55 E-value=6 Score=40.42 Aligned_cols=15 Identities=13% Similarity=0.025 Sum_probs=4.9
Q ss_pred cEEeecCcchHHHHH
Q 016437 218 DFVPVGEDQKQHLEL 232 (389)
Q Consensus 218 diVpvG~DQ~qhleL 232 (389)
++||||.||.+|.|-
T Consensus 235 ~~vp~~~d~~~~~~~ 249 (451)
T 3foc_A 235 TRVPLPVGTGNEDAA 249 (451)
T ss_dssp GCCBCC---------
T ss_pred cccccccccccchhh
Confidence 468999999999654
No 89
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=37.53 E-value=69 Score=30.09 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHHHHHHHccC-cEEEEEeecccccC----CCCHHHHHHH--------HHHHHHHHH
Q 016437 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKA--------TRETAAIYL 143 (389)
Q Consensus 77 ~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~-~~~i~IaDlhAlt~----~~d~~~i~~~--------~~~~~a~~l 143 (389)
+...++.||-|=-.-|=+.++-.+..|. +..+ +|-|+++|.+.-.+ ..++.+.++. .+.+...|.
T Consensus 28 ~g~HallGVSpgNsyFs~drl~~li~Wa--~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~ 105 (247)
T 3oqv_A 28 RGEHALIGISAGNSYFSQKNTVMLLQWA--GQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLE 105 (247)
T ss_dssp CEEEEEEEEESSCTTCCHHHHHHHHHHH--HHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999995 5544 58899999954322 3444333322 234556777
Q ss_pred HcCCCCCCcEEEEcCCc
Q 016437 144 ACGIDNSKASVFVQSHV 160 (389)
Q Consensus 144 A~GlDp~k~~if~QS~v 160 (389)
++|.+.++..+..=||+
T Consensus 106 ~~~~~~~~~rv~~~Sd~ 122 (247)
T 3oqv_A 106 SVGDHAERFRVRSLSEL 122 (247)
T ss_dssp HHCTTGGGEEEEEHHHH
T ss_pred HhCCCccCceeeeHHHh
Confidence 88999887666666775
No 90
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=31.47 E-value=8.2 Score=41.43 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=27.4
Q ss_pred ccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCC-----CHHHHHHHhhhc
Q 016437 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 311 (389)
Q Consensus 260 f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~D-----spe~I~kKI~kA 311 (389)
++.|..++.. ..+.. +| +|||||. +|.|.+.| .+|.++-=+.+.
T Consensus 326 ~~~Pk~v~~h--G~v~~--~G-~KMSKS~---GNvV~p~d~i~~ygaDalR~~ll~~ 374 (722)
T 1rqg_A 326 WNLPYDIPAN--EYLTL--EG-KKFSTSR---NWAIWVHEFLDVFPADYLRYYLTTI 374 (722)
T ss_dssp BCCCSBCCEE--CCEEE--TT-EECBTTT---TBSCBHHHHTTTSCHHHHHHHHHHT
T ss_pred CCCCCEEEEe--eeEEe--CC-eeeeeeC---CCcCCHHHHHHhcCchHHHHHHHhc
Confidence 4557555432 23432 66 7999997 78887543 666676666554
No 91
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=27.64 E-value=22 Score=37.43 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=28.4
Q ss_pred ccchhhHHHhhhh--hh-----cCCcEEe--ecCcchHHHHHHHHHHHHhh
Q 016437 200 ALLTYPVLMASDI--LL-----YQSDFVP--VGEDQKQHLELTRELAERVN 241 (389)
Q Consensus 200 gll~YPvLQAADI--Ll-----~~adiVp--vG~DQ~qhleLtRdiA~rfN 241 (389)
|..+|- +.|| .+ ++.|.+. +|.||..|+.....+++.++
T Consensus 343 G~~~Y~---t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG 390 (607)
T 1f7u_A 343 GTTLYL---TRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMG 390 (607)
T ss_dssp SCCCHH---HHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTT
T ss_pred CCcCCC---CCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcC
Confidence 455563 5676 22 3456666 99999999998888888876
No 92
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=21.93 E-value=2.7e+02 Score=22.90 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHccC---cEEEEEeecccccC--CCCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 016437 97 LGAIKNWIALQNSY---ETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (389)
Q Consensus 97 lgai~~~v~lQ~~~---~~~i~IaDlhAlt~--~~d~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (389)
...|..+...-..+ ...|.|.-...-++ ..++..-.+++..+...|+..|+++++..+
T Consensus 38 ~~~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~ 100 (148)
T 4erh_A 38 QQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISA 100 (148)
T ss_dssp HHHHHHHHHHHTCCCTTTCEEEEEEECCTTCTTCSSSSHHHHHHHHHHHHHHTTTCCGGGEEE
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 34455555443333 34444443322222 235666777788888888888999987643
No 93
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=21.67 E-value=1.1e+02 Score=21.28 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 016437 355 SAYLDKVLADGAAKAADIADATLNNVYQAMGF 386 (389)
Q Consensus 355 ~~~l~~iL~~Ga~kAr~~A~~tl~~v~~~~G~ 386 (389)
.++++.-|++=..+-.+|.++||.+--+++|+
T Consensus 5 seeverklkefvrrhqeitqetlheyaqklgl 36 (52)
T 1y66_A 5 SEEVERKLKEFVRRHQEITQETLHEYAQKLGL 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 35688888888899999999999999998886
Done!