RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016437
(389 letters)
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 515 bits (1329), Expect = 0.0
Identities = 151/358 (42%), Positives = 204/358 (56%), Gaps = 45/358 (12%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
+SEP + S K + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1 MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M
Sbjct: 61 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 243
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 121 QFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 303
YG IFK+PEP IP AGARVMSL D KMSKS + + I LL+
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227
Query: 304 IANKIKRCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTK----------------- 344
+ KIKR TDS + +D ++ +NLL I ++G++
Sbjct: 228 VVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKG 287
Query: 345 -------------GVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
RY D A L V+ +GAAKA A TL VY+A+GF+ +
Sbjct: 288 AVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGFVAQ 345
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 515 bits (1328), Expect = 0.0
Identities = 139/350 (39%), Positives = 195/350 (55%), Gaps = 43/350 (12%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
S++ K ++SGVQP+G + +GNYLGA++ W +Q+ Y+ + +VDLHAIT+ D Q L
Sbjct: 1 SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60
Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
+AT + AI LA G+D K+++FVQSHV H +L W+L+ T +G L++M QFK+KS +
Sbjct: 61 EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSAR- 119
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252
+V L YPVLMA+DILLY + VPVG DQKQHLEL R++A R N +Y +
Sbjct: 120 YANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQ---- 175
Query: 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312
IF +PEP IP ARVMSL D KMSKS + ++ I LL+ I KI + +
Sbjct: 176 -----PIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQ 230
Query: 313 TDSSAGLE--FDNLERPECNNLLSIYQLISGKTK-------------------------- 344
TD+ +D + NL+ +Y +GKT
Sbjct: 231 TDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVA 290
Query: 345 -----GVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
Y+ I +D YL+ V+ DGA KA+ A TL VY A+GF+ R
Sbjct: 291 MLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAVGFVAR 340
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 506 bits (1306), Expect = 0.0
Identities = 150/341 (43%), Positives = 195/341 (57%), Gaps = 45/341 (13%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N Y G
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY------------GE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 319 LEFDNLERPECNNLLSIYQLISGKTK------------------------------GVRY 348
+ +D +P +NLL+IY +SG++ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 349 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
M +S LD+VL +GA KA +A + + QAMG RR
Sbjct: 288 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 508 bits (1311), Expect = 0.0
Identities = 148/348 (42%), Positives = 197/348 (56%), Gaps = 45/348 (12%)
Query: 72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQL 131
++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D +L
Sbjct: 29 IDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLEL 88
Query: 132 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
K R AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+KS
Sbjct: 89 RKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKS-- 146
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
G E V LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N Y
Sbjct: 147 KGNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND----- 201
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD + KIK
Sbjct: 202 -------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSA 254
Query: 312 KTDSSAGLEFDNLERPECNNLLSIYQLISGKTK--------------------------- 344
TDS ++FD +P +NLL+IY ++ T
Sbjct: 255 VTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNAL 314
Query: 345 ---GVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
RY E++ +S LD++L +GA +A A+ L + AMG R+
Sbjct: 315 KPIQDRYYELI-ESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 361
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 500 bits (1289), Expect = e-179
Identities = 111/357 (31%), Positives = 167/357 (46%), Gaps = 58/357 (16%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+ KR ++G+Q +G HLGNYLG +++ I LQ + F+ DLH+IT+ + Q L +
Sbjct: 3 MMKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNF 62
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK----- 191
+ LA G+D KA +F+QS + H + +L+ + +G L +M QFK K +
Sbjct: 63 DLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNP 122
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
G N+ LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+ +
Sbjct: 123 NGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKF------- 175
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311
++P+ + R+M L D KMSKS+ + I L DPK+V+ KI++
Sbjct: 176 -----KLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQA 230
Query: 312 KTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGV------------------------- 346
TDS + F + +P N+L+I + + +
Sbjct: 231 TTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNA 290
Query: 347 --------------RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
+ E+I + + L G +A A TL Y G +
Sbjct: 291 LTEATVNLLVNIQRKREQISRE--QVFNCLQAGKNQAQATARTTLALFYDGFGLGSQ 345
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 465 bits (1198), Expect = e-165
Identities = 106/341 (31%), Positives = 175/341 (51%), Gaps = 49/341 (14%)
Query: 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 135
S R+++G+QP+G +H+GNY GAIK + Q + FI + HA+T D ++L + +
Sbjct: 1 SNAMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNS 60
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
+ AA +L+ GID K+ ++QS V+ +EL W+LS TP+G L + +K+K K G
Sbjct: 61 LKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAK--GL 118
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255
+ L +YPVLMA+DILL+ + VPVG+DQ QH+E+ R++A +VN +
Sbjct: 119 SASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEW----------- 167
Query: 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315
G IF +PE + A V+ DG +KMSK S Q+ I++ + + +I TDS
Sbjct: 168 -GEIFTLPEARVNEEVAVVVGT-DG-AKMSK---SYQNTIDIFSSEKTLKKQISSIVTDS 221
Query: 316 SAGLEFDNLERPECNNLLSIYQLISGKT----------KG-------------------- 345
+A + + E + ++ SG+ +G
Sbjct: 222 TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAR 281
Query: 346 VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 386
+Y E++ ++L ++L GA KA IA + +Y+ +G
Sbjct: 282 EKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL 322
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 464 bits (1196), Expect = e-165
Identities = 130/348 (37%), Positives = 182/348 (52%), Gaps = 56/348 (16%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLPY--DTQQLSKA 134
KR++SG+QP+G IH+GNYLGAIK W+A+ + F IVD HA+T P D L++
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
T E A + +A G+D K ++FVQSHV H EL W+ ++ TP+G L +M QFK+K+ K
Sbjct: 62 TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--Q 119
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
E V LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N+L+
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLF---------- 169
Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314
G F P+ L+ P RV + DG +KMSKS + I LL+P++ I KI+ D
Sbjct: 170 --GETFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223
Query: 315 SSAGLEFDNLERPECNNLLSIYQLISGKT-----------KGV----------------- 346
+ + PE L + + K GV
Sbjct: 224 -PQRIRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEAL 282
Query: 347 -----RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
R E + D Y+ L +GA +A +A AT+ V + +G L
Sbjct: 283 RPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGLLLP 330
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 425 bits (1096), Expect = e-149
Identities = 94/365 (25%), Positives = 152/365 (41%), Gaps = 54/365 (14%)
Query: 59 YCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVD 118
+ ++ + T P +++ + R+++G +PTG++HLG+ G+++N + LQ+ E + D
Sbjct: 3 FVDLEVPTMTTPTPAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLAD 62
Query: 119 LHAITLPYD-TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIG 177
+ A+T +D +Q+ + A YLA G+D K + VQS V EL + +
Sbjct: 63 VQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVS 122
Query: 178 WLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
L + K + + G GE V YPV A+DI + + VPVG+DQ LE TRE+
Sbjct: 123 HLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREI 182
Query: 237 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296
R N LY + P+ + R+ L DG +KMSKS + I
Sbjct: 183 VRRFNALY------------APVLAEPQAQLSRV-PRLPGL-DGQAKMSKSLG---NAIA 225
Query: 297 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGV---------- 346
L D D +A K+ TD L + R E N + + V
Sbjct: 226 LGDSADEVARKVMGMYTD-PGHLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAG 284
Query: 347 ------------------------RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQ 382
R E D + + + +G A+ ++A TL V +
Sbjct: 285 GLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRR 344
Query: 383 AMGFL 387
AM
Sbjct: 345 AMRLF 349
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 404 bits (1040), Expect = e-141
Identities = 110/347 (31%), Positives = 166/347 (47%), Gaps = 56/347 (16%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKAT 135
RI+SG++PTG +H+G+ +GA++NW+ LQ E +F+ D HA+T Y D +L + T
Sbjct: 12 HMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYT 71
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-G 194
R+ +LACGID K+ +FVQS V+ H EL L S + L ++ +KE +
Sbjct: 72 RDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYK 131
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
+ L YPVL A+DIL+Y+++ VPVGEDQ H+ELTRE+A R NYLY
Sbjct: 132 DLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLY---------- 181
Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314
+F PE ++ ++ DG KMSK S + INL + + I R TD
Sbjct: 182 --DEVFPEPEAILSRV-PKLPGT-DG-RKMSK---SYGNIINLEISEKELEQTILRMMTD 233
Query: 315 SSAGLEFDNLERPECNNLLSIYQLIS--------------------GKTKGV-------- 346
A + + PE + +Q K +
Sbjct: 234 -PARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRK 292
Query: 347 ------RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
+ +I D Y+D V+ +G KA ++A T+ V +AM +
Sbjct: 293 LAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 276 bits (708), Expect = 6e-87
Identities = 58/322 (18%), Positives = 118/322 (36%), Gaps = 50/322 (15%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT---LPYDTQQLSK 133
R G +P+G +H+ + N + E +F++ D A+ + + +++
Sbjct: 40 LIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRI 99
Query: 134 ATRETAAIYLACGIDNSKAS-VFVQSHVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 191
R ++ A G+D K ++ + +H + W + + ++ + K
Sbjct: 100 VGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGK 159
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
+ A + YP++ DI ++D +G DQ++ L RE + +
Sbjct: 160 -TEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLK------ 212
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311
P L + L G +KMSKS P S I + D ++ +A KI++
Sbjct: 213 -----------PVILSHH---MLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKIRQA 256
Query: 312 KTD-----SSAGLEFDNLERPECNNLLSIY------------QLISGKTKGVRYEEIMSD 354
+SA + + N + Y I G T YE++
Sbjct: 257 YCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTT-YATYEDLEQA 315
Query: 355 SAYLDKVLADGAAKAADIADAT 376
++ +++ A K+ + D
Sbjct: 316 --FVSDEVSEDALKSC-LIDEV 334
Score = 200 bits (509), Expect = 4e-58
Identities = 44/344 (12%), Positives = 92/344 (26%), Gaps = 62/344 (18%)
Query: 51 HNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNS 109
+R TA A+ + + + + + K++IA
Sbjct: 356 EAVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPE 415
Query: 110 YETLFFIVDLHAIT---LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVEL 166
+ D A+ + + +S A + A+ A G+ +S V + + +
Sbjct: 416 GTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDD 475
Query: 167 MWLLS-SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 225
W+ L+ + + GGE + ++ + L+ V
Sbjct: 476 FWVSVIGIARKNLLSHVEELY------GGEVRNAGQVIAALMRVATALMLSVSHVISTSL 529
Query: 226 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMS 285
RE + + R+ +L + +
Sbjct: 530 DGHINAFAREYTKERI-----------------------DCVQTLEGRIPALHRPGAAPA 566
Query: 286 KSAPSDQSRINLLDPKDVIANKIKR--C--KTDSSAGLEFD----------NLERPECNN 331
+ L D I KIK+ +++ + ++ER E N
Sbjct: 567 VLGAD--DVLYLDDNDMDIRRKIKKAYSAPNEEANPVISVAQHLLAQHGALSIERGEANG 624
Query: 332 LLSIYQLISGKTKGVRYEEIMSDSAYLDKVLADGAAKAADIADA 375
Y E +++D L KAA +
Sbjct: 625 GNVSYN---------TPEALVAD--CGSGALHPADLKAA-VLQL 656
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 263 bits (674), Expect = 2e-85
Identities = 55/323 (17%), Positives = 105/323 (32%), Gaps = 34/323 (10%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATR 136
+ G + +G IHLG L A Q + +T F+ D H+ L
Sbjct: 33 PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQE 92
Query: 137 ET--------AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 188
G D K + S + + + + L+++++
Sbjct: 93 VALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITI 152
Query: 189 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 248
+ GE + A L YP++ +DI G DQ++ + E+A+++ Y +
Sbjct: 153 MGRQMGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHE 212
Query: 249 WKKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 304
+KL + P P KMSKS P S + + D + I
Sbjct: 213 GEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPY--SAVFIHDSPEEI 270
Query: 305 ANKIKRCKTDSS------------AGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIM 352
K+++ + + + + ++ T +EE+
Sbjct: 271 RQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTT----FEELK 326
Query: 353 SDSAYLDKVLADGAAKAADIADA 375
D + + L K A +A+
Sbjct: 327 RD--FAEGKLHPLDLKNA-VAEY 346
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 249 bits (638), Expect = 4e-80
Identities = 53/307 (17%), Positives = 107/307 (34%), Gaps = 39/307 (12%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAIT---LPYDTQQLSK 133
K G +P+G +H+ L L ++ +F+I D A + D +++ K
Sbjct: 56 KLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKK 115
Query: 134 ATRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 191
++ +CG++ S + W L + +N+M + + +
Sbjct: 116 VGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGR 175
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
+ GE + + YP + +DI D +G DQ++ L RE +
Sbjct: 176 SEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKI--------- 226
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311
+ + + + L +G KMSKS + S I + D + + KIK+
Sbjct: 227 -----------KKKPVILSHGMLPGLLEGQEKMSKSDEN--SAIFMDDSESDVNRKIKKA 273
Query: 312 KTDSSAGLEFDNLERPECNNLLSIYQLIS--------GKTKGVRYEEIMSDSAYLDKVLA 363
+E + + + + Y + G +E+ D Y++ +
Sbjct: 274 YCP-PNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHD--YVNGFIH 330
Query: 364 DGAAKAA 370
K
Sbjct: 331 PLDLKDN 337
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 246 bits (630), Expect = 3e-79
Identities = 50/276 (18%), Positives = 98/276 (35%), Gaps = 44/276 (15%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA---ITLPYDTQQLSK 133
+G +P+G IH+ L + N + + + +I D A + + D ++ +
Sbjct: 40 IFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRE 99
Query: 134 ATRETAAIYLACGIDNSKASVFVQSHVR----AHVELMWLLSSATPIGWLNKMIQFKEKS 189
R ++ ACGI+ S +++E M ++ + I + + Q ++
Sbjct: 100 LGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRN 159
Query: 190 HKAGGENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGG 246
+ + + + YP + A+D+ D +G DQ++ L E A
Sbjct: 160 ---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGL---- 212
Query: 247 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306
+ I + +MSL+ KMSKS P I + D + ++
Sbjct: 213 -----------------KIPISLSHHMLMSLSGPKKKMSKSDPQ--GAIFMDDTEQEVSE 253
Query: 307 KIKRCKTDSS-------AGLEFDNLERPECNNLLSI 335
KI R +++ L NL
Sbjct: 254 KISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCGK 289
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 216 bits (553), Expect = 4e-67
Identities = 47/351 (13%), Positives = 93/351 (26%), Gaps = 73/351 (20%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYDT--QQLSKA 134
+ +G P+G +H+G+ + W+ + I D + +
Sbjct: 73 GFFLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRW 132
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
+ +A G D K +F S E+ ++ + F E+S
Sbjct: 133 AYDNILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFTEQSK---- 188
Query: 195 ENVGVALLTYPVLMASDILLYQ-SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 253
+ ++ +P + + + +P DQ + L R+ AE + Y
Sbjct: 189 ----IGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKT-------- 236
Query: 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313
+ +P SLT KMS S ++ I L D + + K+ +
Sbjct: 237 ------AALHSKFVP-------SLTSLSGKMSAS--KPETAIYLTDSPEDVEKKVWKFTL 281
Query: 314 DSSAGLEFDNLE---RPECNNLLSIY---------------------QLISGKTKGV--- 346
+ E PE + +L G+ K
Sbjct: 282 TGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLIS 341
Query: 347 -----------RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 386
R ++ + L +
Sbjct: 342 KIQEFLKEHQRRRKKAEKLVEKFKYTGKLAQEMWNEAIPEPLKRSHHHHHH 392
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 162 bits (410), Expect = 8e-46
Identities = 52/356 (14%), Positives = 108/356 (30%), Gaps = 78/356 (21%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
+ +G P+ ++H+G+ + I W+ + + + D + Q
Sbjct: 108 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 167
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
E A +ACG D +K F+ S + + I Q K
Sbjct: 168 AVENAKDIIACGFDINK--TFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGI--FGFT 223
Query: 195 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYL 243
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 224 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY- 282
Query: 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 303
P+P + + +L +KMS S P+ S I L D
Sbjct: 283 -------------------PKPALLHST-FFPALQGAQTKMSASDPN--SSIFLTDTAKQ 320
Query: 304 IANKIKRCKTDSSAGLEFD------NLERPECNNLLSIY-----------------QLIS 340
I K+ + + N + L+ + +++
Sbjct: 321 IKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLT 380
Query: 341 GKTKGV--------------RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQ 382
G+ K R +E+ + + +A A ++ +
Sbjct: 381 GELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQKLAAALEHHHHH 436
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 150 bits (381), Expect = 3e-41
Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 43/252 (17%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
+ +G P+ ++H+G+ + I W+ + + + D + Q
Sbjct: 155 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 214
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
E A +ACG D +K +F + + + K + F + G
Sbjct: 215 AVENAKDIIACGFDINKTFIFSDLDYMGMSSGFY-----KNVVKIQKHVTFNQVKGIFGF 269
Query: 194 GENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNY 242
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 270 TDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY 329
Query: 243 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 302
P+P + + +L +KMS S P+ S I L D
Sbjct: 330 --------------------PKPALLHST-FFPALQGAQTKMSASDPN--SSIFLTDTAK 366
Query: 303 VIANKIKRCKTD 314
I K+ +
Sbjct: 367 QIKTKVNKHAFS 378
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 147 bits (372), Expect = 1e-40
Identities = 52/351 (14%), Positives = 106/351 (30%), Gaps = 80/351 (22%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT--QQLS 132
+ +G P+ S+H+G+ + + LQ++ + + D + ++
Sbjct: 74 LFYLYTGRGPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETH 132
Query: 133 KATRETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
E +ACG D +F + + + + + FK+ +
Sbjct: 133 NYAYENMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKISCSQIKSIFGFKDSCN- 191
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 240
V +P + A+ VP DQ + + R++A R+
Sbjct: 192 -------VGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRL 244
Query: 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300
YL P + + SL +KMS S + S I + D
Sbjct: 245 GYLK------------------PSSIHSI---FLPSLQGSQTKMSASVQN--SSIFVNDN 281
Query: 301 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS-------------------- 340
++ I NKI + E + ++ +Q +
Sbjct: 282 EESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGE 341
Query: 341 ---GKTKGVRYE---EIMSD-----SAYLDKVLADGAAKAADIADATLNNV 380
G+ K + + ++ + A D V+A K+ + N
Sbjct: 342 MLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSREQLLKLFINK 392
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 145 bits (368), Expect = 4e-40
Identities = 42/349 (12%), Positives = 96/349 (27%), Gaps = 85/349 (24%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITL-PYDTQQLSKA 134
+ +G P+ S+H+G+ + + W+ + + D +Q+
Sbjct: 78 PFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAM 137
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
T E +A G D +F ++ M+ + + + + G
Sbjct: 138 TTENIKDIIAMGFDPELTFIFRDFD---YMGCMY-----RTVAKIERAFTASQVRGCFGF 189
Query: 194 GENVGVALLTYPVLMASDILLYQSD------------FVPVGEDQKQHLELTRELAERVN 241
+P + A+ +P DQ + LTR++A R+
Sbjct: 190 AMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLG 249
Query: 242 YLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 301
YL P + L+ KMS S + + L D +
Sbjct: 250 YLK------------------PAVIHSK---FFPGLSGPKGKMSS---SSGTAVLLTDTE 285
Query: 302 DVIANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIY--------------------QL 338
++ +KI + + ++ E + + ++
Sbjct: 286 KMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRI 345
Query: 339 ISGKTKGV--------------RYEEIMSDSAYLDKVLADGAAKAADIA 373
++G+ K + + + + + L
Sbjct: 346 MTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMGPAKKAAT 394
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 142 bits (360), Expect = 9e-39
Identities = 35/255 (13%), Positives = 73/255 (28%), Gaps = 48/255 (18%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYD--TQQLSK 133
+ +G P+ S+HLG+ + + W+ + + D + +
Sbjct: 102 PFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKN 161
Query: 134 ATRETAAIYLACGIDNSKASVFVQSHVRAHV--ELMWLLSSATPIGWLNKMIQFKEKSHK 191
RE A +A G D +F E + +S + F +
Sbjct: 162 FARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDC- 220
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 240
+ + + + +P DQ + + R++A+++
Sbjct: 221 -------IGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKL 273
Query: 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300
Y +P + +L +KMS S + + I + D
Sbjct: 274 KY--------------------SKPALLH-SRFFPALQGSTTKMSASDDT--TAIFMTDT 310
Query: 301 KDVIANKIKRCKTDS 315
I KI +
Sbjct: 311 PKQIQKKINKYAFSG 325
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 132 bits (334), Expect = 2e-35
Identities = 44/307 (14%), Positives = 90/307 (29%), Gaps = 49/307 (15%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY---DTQQLSKA 134
I P + L Y+ LQ+++ I L I + + SK
Sbjct: 82 PTFIFIQKYPQKEVALEEYITLEFAR-YLQDAFNIQVIIQILDDIKVLNREATINEASKM 140
Query: 135 TRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
+ + LA G + K ++ + + L+ AT + F+ +
Sbjct: 141 SNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKATAYNVVQPFFNFEYSDN--- 197
Query: 194 GENVGVALLTYPVLMASDILLYQSDF---------VPVGEDQKQHLELTRELAERVNYLY 244
+ L P +M + + V Q + ++A +N+
Sbjct: 198 -----IGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNF-- 250
Query: 245 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 304
+P + +++ L G++K + + I L D +
Sbjct: 251 ------------------IQPTV--LFHKMVPLLSGVTKFDIPSD--HNSILLSDNAKQV 288
Query: 305 ANKI-KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMSDSAYLDKVLA 363
KI K + E +C+ +S L + + +++ Y L
Sbjct: 289 ERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEK--YSKGELL 346
Query: 364 DGAAKAA 370
G K
Sbjct: 347 SGELKKI 353
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 130 bits (328), Expect = 2e-34
Identities = 42/249 (16%), Positives = 72/249 (28%), Gaps = 43/249 (17%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
+ +G P+ ++H+G+ + + ++ + I D + +
Sbjct: 101 PFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAY 160
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
RE + G D +F H E L ++K I E G
Sbjct: 161 GRENIKDIVTLGFDPKLTYIFSNVEASHHFEENIL--------KISKTINLNEAIKVFGF 212
Query: 194 GENVGVALLTYPVLMASDILLYQSDF--------VPVGEDQKQHLELTRELAERVNYLYG 245
+ + + +P + F VP DQ L R+ A+ +
Sbjct: 213 DMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGEKK- 271
Query: 246 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 305
P + + L KMS S P+ S I L D +D I
Sbjct: 272 -----------------PSSIYVS---LLPDLKGVNRKMSASDPN--SSIYLDDAQDTIR 309
Query: 306 NKIKRCKTD 314
KI
Sbjct: 310 KKIIAYAYS 318
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 92.9 bits (230), Expect = 6e-21
Identities = 52/278 (18%), Positives = 83/278 (29%), Gaps = 55/278 (19%)
Query: 78 KKRIVSGVQPT-GSIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT-QQLSK 133
I +G P+ G++HLG+ L I Y + D + + ++
Sbjct: 91 PIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDS 150
Query: 134 ATRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQFKEKSH 190
TRE +ACG D K +F+ S ++ L+ PI L F ++
Sbjct: 151 YTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDAN 210
Query: 191 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 250
V +P + D +P + A+ V+ +K
Sbjct: 211 --------VGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTP 262
Query: 251 KLGGRGGAIFKVPEPL-----------IPPAGA--------------------------- 272
K + V E + +G
Sbjct: 263 KKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGK 322
Query: 273 RVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310
+ L +KMS S P+ S I L D I NKI R
Sbjct: 323 FLPGLQGSGTKMSASDPN--SAIYLTDTPAQIKNKINR 358
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 85.2 bits (211), Expect = 2e-18
Identities = 54/274 (19%), Positives = 85/274 (31%), Gaps = 56/274 (20%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA----ITLPYDTQQLSKA 134
++ G PTG H G ++ K + E + DLHA + P +
Sbjct: 41 KLYWGTAPTGRPHCGYFVPMTKL-ADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAK 99
Query: 135 TRETAAIYL--ACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKS 189
E + + + K V S + ++ LS+ + K
Sbjct: 100 YYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQ 159
Query: 190 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 249
N ++ L YP++ A D D G DQ++ L E + Y
Sbjct: 160 ----VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGY------- 208
Query: 250 KKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 305
K P++P KMS S P S+I+LL+ +
Sbjct: 209 -----------KKRAHLMNPMVPG--------LAQGGKMSASDP--NSKIDLLEEPKQVK 247
Query: 306 NKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI 339
KI F + E N LLS Q +
Sbjct: 248 KKINSA---------FCSPGNVEENGLLSFVQYV 272
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 70.0 bits (172), Expect = 1e-13
Identities = 59/293 (20%), Positives = 102/293 (34%), Gaps = 62/293 (21%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K G +P+G IHLG+YL K I LQN+ ++ + + DL A + + ++ K
Sbjct: 28 EKSAYIGFEPSGKIHLGHYLQIKK-MIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHK 191
++ A G+ +V + L L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGLKAK----YVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE-- 140
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
EN VA + YP++ + D G +Q++ L REL
Sbjct: 141 --DENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLARELLP------------- 185
Query: 252 LGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307
K P++ G DG KMS S + I + D + I K
Sbjct: 186 ---------KKVVCIHNPVLT--G------LDGEGKMSSSKGNF---IAVDDSPEEIRAK 225
Query: 308 IKRCKTDSSAGLEFDNLERPECNNLLSIYQ-LISGKTKGVRYEEIMSDSAYLD 359
IK+ + E N ++ I + + R E+ D
Sbjct: 226 IKKA---------YCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNS 269
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 69.0 bits (169), Expect = 4e-13
Identities = 54/316 (17%), Positives = 102/316 (32%), Gaps = 55/316 (17%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIA-LQNS-YETLFFIVDLHA-ITLPY--DTQQLSKATRET 138
G +P+G H+G + K + L + + HA I D + A R
Sbjct: 41 GYEPSGVAHIGWLVWMYK--VKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98
Query: 139 AAIYLACGIDNSKASVFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
+ A G+ + + + L+ ++ + + + + + +A
Sbjct: 99 RRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGR--RAEEA 156
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY------------- 242
V + L YP++ SDI D G DQ++ L R++AE++
Sbjct: 157 EVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISS 216
Query: 243 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 302
L G + + G + KMSKS P ++ + ++D D
Sbjct: 217 LQGPGRMEASQGEIDDVLAEV-------------------KMSKSKP--ETAVFVVDSDD 255
Query: 303 VIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMSDSAYLDKVL 362
I KI++ + ++ + N +L I + I G
Sbjct: 256 DIRRKIRKA---------YCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEY 306
Query: 363 ADGAAKAADIADATLN 378
D D L+
Sbjct: 307 TSYEELERDYTDGRLH 322
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 65.8 bits (161), Expect = 4e-12
Identities = 62/293 (21%), Positives = 113/293 (38%), Gaps = 57/293 (19%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRE 137
R G +P+G IHLG+ + K + LQ + +E + + D+HA + +++++
Sbjct: 34 RAYVGYEPSGEIHLGHMMTVQK-LMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADY 92
Query: 138 TAAIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
+++A G+D S+A + S R +V + ++ T + + + +
Sbjct: 93 NKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRR----K 148
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
E+ V+ + YP++ A DI D G DQ++ L RE R+ Y
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGY------------ 196
Query: 255 RGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310
P P++ DG KMS S + I++ DP + + KI++
Sbjct: 197 ------SSPVCLHTPILVG--------LDG-QKMSSS---KGNYISVRDPPEEVERKIRK 238
Query: 311 CKTDSSAGLEFDNLERPECNNLLSIYQLI----SGKTKGVRYEEIMSDSAYLD 359
+ E N +L I + GK R + D Y
Sbjct: 239 A---------YCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYAS 282
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 63.3 bits (154), Expect = 3e-11
Identities = 61/313 (19%), Positives = 103/313 (32%), Gaps = 58/313 (18%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAI----TLPYDTQQLSKA 134
+I G TG H+ ++ K + E DLHA P++ +L +
Sbjct: 37 KIYWGTATTGKPHVAYFVPMSK-IADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVS 95
Query: 135 TRETA--AIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKS 189
E A+ + G+ K + + + ++ LSS K K
Sbjct: 96 YYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQ 155
Query: 190 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 249
E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 156 ----VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGY------- 204
Query: 250 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309
L+ P ++ G SKMS S S+I+LLD K+ + K+K
Sbjct: 205 -----------SKRVHLMNP----MVPGLTG-SKMSSSEEE--SKIDLLDRKEDVKKKLK 246
Query: 310 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG----VRYEEIMSDSAYLDKVLADG 365
+ F E N +LS + + K +R E+ + Y
Sbjct: 247 KA---------FCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAY----- 292
Query: 366 AAKAADIADATLN 378
D A ++
Sbjct: 293 VDLEKDFAAEVVH 305
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 4e-07
Identities = 83/514 (16%), Positives = 143/514 (27%), Gaps = 205/514 (39%)
Query: 3 RALLSHF---LIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCY 59
L+ F + N L + L + L LI+ Y
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK----ELIK--------------NY 126
Query: 60 --CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYL-----GAIKNWIA-LQNSYE 111
+ P ++S+ + V G+ L G ++ L++ Y+
Sbjct: 127 ITARIMAKRPFDKKSNSA-----LFRAVG-EGNAQL--VAIFGGQGNTDDYFEELRDLYQ 178
Query: 112 T----LFFIVDLHAITLPYDTQQLSKATRETAAIYLACGID--------NSK------AS 153
T + ++ A TL +L + T + ++ G++ ++ S
Sbjct: 179 TYHVLVGDLIKFSAETL----SELIRTTLDAEKVFTQ-GLNILEWLENPSNTPDKDYLLS 233
Query: 154 VFV--------Q-SH--VRAHV------ELMWLLSSATPIG--------------WLNKM 182
+ + Q +H V A + EL L AT W +
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES-- 291
Query: 183 IQFKEKSHKAGGENVGVALL---------TYPVLMASDILLYQSDFVPVGEDQ------- 226
F KA + +L YP +L D + E
Sbjct: 292 --FFVSVRKA------ITVLFFIGVRCYEAYPNTSLPPSIL--EDSLENNEGVPSPMLSI 341
Query: 227 ----KQHLELTRELAERVN-----------YLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 271
++ ++ + + N L G K + G PP
Sbjct: 342 SNLTQEQVQ---DYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-------------PPQ- 384
Query: 272 ARVMSLTDGLS----KMSKSAPSDQSRI----------------------NLLDP----- 300
SL GL+ K + DQSRI +LL P
Sbjct: 385 ----SLY-GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 301 -KDVIANKI----KRCKT---DSSAGLEFDNLERPECNNLL-SIYQLISGKTKGVRYEEI 351
KD++ N + K + D+ G +L R ++ I I V++E
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDG---SDL-RVLSGSISERIVDCII--RLPVKWETT 493
Query: 352 MSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 385
A +L G A+ + T N G
Sbjct: 494 TQFKA--THILDFGPGGASGLGVLTHRNK-DGTG 524
Score = 50.0 bits (119), Expect = 9e-07
Identities = 54/356 (15%), Positives = 99/356 (27%), Gaps = 123/356 (34%)
Query: 63 SLSEPTAPVASSSSVKKRIVSGVQPTGSIHL-GNYLGAIKNWI--ALQNSYETLFFIV-- 117
L EPT A+ +PT L G +LG + + + + ++ + +
Sbjct: 40 ILPEPTEGFAADD----------EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 118 ----------DLHAI--TLPYDTQQLSKATRETAAIYL-ACGIDNSKASVFVQSHVRAHV 164
D+HA+ L + T+E Y+ A + S
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS------ 143
Query: 165 ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 224
L A G + F GG+ G + Y F
Sbjct: 144 ----ALFRAVGEGNAQLVAIF-------GGQ--G------------NTDDY---F----- 170
Query: 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK-VPEPLIPPAGARVMSLTDGLSK 283
EL + LY + + LI + + L
Sbjct: 171 ---------EELRD----LY-------------QTYHVLVGDLIKFSAETLSELI----- 199
Query: 284 MSKSAPSDQSRI--NLLDPKDVIANKIKRCKTD--SSAGLEFDNLERPECNNLLSIYQL- 338
D ++ L+ + + N D S + P L+ + QL
Sbjct: 200 ---RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC-----P----LIGVIQLA 247
Query: 339 ---ISGKTKGVRYEEIMSD----SAYLDKVLADGAAKAADIADATLNNVYQAMGFL 387
++ K G E+ S + + ++ A D ++ +V +A+ L
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Score = 36.2 bits (83), Expect = 0.019
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 48/129 (37%)
Query: 258 AIFKV--PEPLIPP----AG------------ARVMSLTDGLS-------KMSKSAPSDQ 292
A F+ + LIP AG A VMS+ + M + P D+
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 293 S-----RINLLDPKDVIANKIKRCKTDSSAGLEF--DNLERPECNNLLSI--Y-----QL 338
+ ++P V A + S L++ + + + L+ I Y Q
Sbjct: 1802 LGRSNYGMIAINPGRVAA-------SFSQEALQYVVERVGK-RTGWLVEIVNYNVENQQY 1853
Query: 339 -ISGKTKGV 346
+G + +
Sbjct: 1854 VAAGDLRAL 1862
>3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein
structure initiative, midwest center for structural
genomics, MCSG; 1.96A {Streptococcus pneumoniae}
Length = 123
Score = 29.3 bits (66), Expect = 0.96
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 338 LISGKTKGVRYEEI----MSDSAYLDKVLADGAAK 368
I+GK GVR EEI M + LDK L D AK
Sbjct: 75 AITGKICGVRIEEIDDPLMQEIRRLDK-LVDWLAK 108
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 28.5 bits (64), Expect = 4.6
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 202 LTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 261
L YP A D + ++D G DQ+ +L + RE+ YG
Sbjct: 173 LLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRA----YGQSP----------QVC 218
Query: 262 VPEPLIPPAGARVMSLTDGLSKMSKSA 288
PL+ DG KMSKS
Sbjct: 219 FLMPLLVG--------LDGREKMSKSL 237
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 27.9 bits (63), Expect = 5.9
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 361 VLADGAAKA--ADIADATLNNVYQAMGFLRR 389
++A G KA + L N+ A+ +L
Sbjct: 212 LVATGVYKARDIKAPGSGLGNIVAALDYLTT 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.391
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,719,862
Number of extensions: 335453
Number of successful extensions: 716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 46
Length of query: 389
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 294
Effective length of database: 4,049,298
Effective search space: 1190493612
Effective search space used: 1190493612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)