BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016441
(389 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C8L4|Y4648_ARATH Uncharacterized protein At4g26485 OS=Arabidopsis thaliana
GN=At4g26485 PE=4 SV=1
Length = 209
Score = 222 bits (566), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/205 (54%), Positives = 143/205 (69%), Gaps = 3/205 (1%)
Query: 12 EKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKS 71
E EKWI+HYSS H+ILLVGEG+FSFSLCLA AFGSA NI A+SLDS D++ KY A
Sbjct: 2 EISEKWIRHYSSTHKILLVGEGNFSFSLCLASAFGSAMNITATSLDSEDELSIKYMDAVD 61
Query: 72 NLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAG--FYGKEDNHLLIEMHR 129
N++ LK+ G I H VD TM L +++DRI+FNFPHAG F+G+E + IE H+
Sbjct: 62 NINILKRYGCDIQHEVDVHTMSFDNSLSLQRYDRIVFNFPHAGSRFFGRELSSRAIESHK 121
Query: 130 SLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAY 189
LVR F N+ ML + GE+H++HKTT PFS+W IK+L G L L+ S+F++ YP Y
Sbjct: 122 ELVRGFLENAKEMLEEDGEIHITHKTTYPFSDWGIKKLGKGEGLKLLKKSKFELSHYPGY 181
Query: 190 NNKRGDGP-RCDEPFPLGECSTFIF 213
KRG G R D+ FP+GECST++F
Sbjct: 182 ITKRGSGGRRSDDYFPVGECSTYMF 206
>sp|O94480|YC6D_SCHPO UPF0617 protein C1919.13c OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPCC1919.13c PE=3 SV=1
Length = 282
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 108/183 (59%), Gaps = 2/183 (1%)
Query: 15 EKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASN-ICASSLDSYDDVIQKYKRAKSNL 73
E+++ + N++ LL+GEG+FSF+ L L S+ + A+S DS +D+ QKY A +
Sbjct: 48 ERYVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSSEGFVLATSYDSKEDLKQKYPDAAEYI 107
Query: 74 DNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVR 133
++ G ++H +DAT + LH L+T+KFD I +NFPH+G K+ + +++ + L+
Sbjct: 108 SKIEINGGKVMHEIDATKLHLHKKLKTQKFDTIFWNFPHSGKGIKDQDRNILDNQKMLL- 166
Query: 134 DFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKR 193
FF+ S +L + G + ++ T P++ WN+K LA + + + +F YP Y+++R
Sbjct: 167 AFFKASKFLLSEKGVIVITLAETKPYTLWNLKGLAKDAGYTSLMTEKFDSSFYPEYSHRR 226
Query: 194 GDG 196
G
Sbjct: 227 TIG 229
>sp|Q3UY23|FDXA1_MOUSE Ferredoxin-fold anticodon-binding domain-containing protein 1
homolog OS=Mus musculus GN=Fdxacb1 PE=2 SV=2
Length = 622
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 22/200 (11%)
Query: 26 QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILH 85
++LLVGEG+FSF+ L + ++ A+ + ++ A NL L++ G +
Sbjct: 5 RLLLVGEGNFSFAASLIDGLDPSVSVTATGFQ-HRAALEGDPVALENLKRLRERGVEVRF 63
Query: 86 GVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRD 145
GVD T + R FDRI FNFPH G + +R L+ FF++ + +L
Sbjct: 64 GVDCTQLSHALPADDRDFDRIYFNFPHCGRKAG------VAKNRELLAKFFQSCADVLAK 117
Query: 146 GGEVHVS----------HKTTVPFSN-WNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRG 194
GEVHV+ K + N W + +A L F E P Y +
Sbjct: 118 AGEVHVTLCRGQGGTPADKPQREWHNSWQVVAMAALGGFILSDVCPFSCEAVPGY---KC 174
Query: 195 DGPRC-DEPFPLGECSTFIF 213
G R D PF + T+IF
Sbjct: 175 TGYRSQDRPFHIEGALTYIF 194
>sp|Q9BRP7|FDXA1_HUMAN Ferredoxin-fold anticodon-binding domain-containing protein 1
OS=Homo sapiens GN=FDXACB1 PE=2 SV=3
Length = 624
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 7/127 (5%)
Query: 26 QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILH 85
++LLVGEG+FSF+ L+ ++ + A+ L + + + A NL L++ G +
Sbjct: 5 RLLLVGEGNFSFAAALSETLDQSTQLTATCLQRPAE-LARDPLAWENLQCLRERGIDVRF 63
Query: 86 GVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRD 145
GVD T + +L R+FD+I F FPH G + +R L+ FF++ + +L +
Sbjct: 64 GVDCTQLADVFELHEREFDQIYFIFPHCGRKAG------VAKNRELLAKFFQSCADVLAE 117
Query: 146 GGEVHVS 152
GEVHV+
Sbjct: 118 EGEVHVA 124
>sp|P40493|YIJ6_YEAST UPF0617 protein YIL096C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YIL096C PE=1 SV=1
Length = 336
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 55/248 (22%)
Query: 21 YSSNHQILLVGEGDFSFSLCLALA-FGSASNICASSLD-SYDDVIQKYKRA-KSNLDNLK 77
+ + ++L GEGDFSF+ + + + N+ +S D S +++ KY + N LK
Sbjct: 68 FEKDETLMLCGEGDFSFARSIVEQNYIESDNLIITSYDNSVNELKLKYPHTFEENYQYLK 127
Query: 78 KLGTCILHGVDATTM----------------ELHPDLR--TRKFDRIIFNFPHAGFYGKE 119
L I +D T + D R + I+FNFPH G G +
Sbjct: 128 DLNIPIFFQIDVTKLVKSFKISKNNTWFKIINRLSDHRWGNKPLQNIVFNFPHNG-KGIK 186
Query: 120 DNHLLIEMHRSLVRDFFRNS-------------------------------SGMLRDG-G 147
D I H+ L+ +FF+NS + +G G
Sbjct: 187 DQERNIREHQDLIFNFFQNSLQLFNLINTKIQNDTLRYTQGYDLNEDTPQAKKLTAEGYG 246
Query: 148 EVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPR-CDEPFPLG 206
+ +S P+ +W IK LA + L+L S+F+ E++P Y+++R + + +P
Sbjct: 247 NIILSLFDGEPYDSWQIKLLAKKNGLTLSRSSKFQWENFPGYHHRRTNSEQDTTKPAKER 306
Query: 207 ECSTFIFG 214
+ +IF
Sbjct: 307 DARFYIFS 314
>sp|B1JVL5|Y2247_BURCC UPF0246 protein Bcenmc03_2247 OS=Burkholderia cenocepacia (strain
MC0-3) GN=Bcenmc03_2247 PE=3 SV=1
Length = 260
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 280 GRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRF-- 337
G A V C+ E+ + + + P+F D+ GG Y+I + A + RF
Sbjct: 164 GAARVLVNCASTEYFK-SVKPKLLAAPVITPVFEDWKGGRYKIISFHAKRARGLMARFVV 222
Query: 338 ENNVGYPLGESLISYERYMVEAPGRTLNSYIY 369
EN + P S E Y+ +A ++Y+Y
Sbjct: 223 ENRITDPNALKAFSTEGYVFDAAASNDSTYVY 254
>sp|B1YTN1|Y2140_BURA4 UPF0246 protein BamMC406_2140 OS=Burkholderia ambifaria (strain
MC40-6) GN=BamMC406_2140 PE=3 SV=1
Length = 260
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 280 GRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRF-- 337
G A V C+ E+ + + + P+F D+ GG Y+I + A + R+
Sbjct: 164 GAARVLVNCASTEYFK-SVKPKLLAAPVVTPVFEDWKGGRYKIISFHAKRARGLMARYIV 222
Query: 338 ENNVGYPLGESLISYERYMVEAPGRTLNSYIY 369
EN + P + E Y+ +A ++Y+Y
Sbjct: 223 ENRIAEPAALKDFAMEDYVFDAAASNDSTYVY 254
>sp|P74927|FLIM_TREPA Flagellar motor switch protein FliM OS=Treponema pallidum (strain
Nichols) GN=fliM PE=3 SV=2
Length = 344
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 74 DNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVR 133
D + +L T I G DA+ + P TRK +++F + KE L MH + R
Sbjct: 8 DEIDQLLTAISSG-DASIEDARPISDTRKI--TLYDFRRPDKFSKEQMRTLSLMHETFAR 64
Query: 134 DFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFK 182
+ S LR VHV+ + + + I+ + S+L++I K
Sbjct: 65 LTTTSLSAQLRSMVHVHVASVDQLTYEEF-IRSIPTPSTLAVITMDPLK 112
>sp|A9AG13|Y2209_BURM1 UPF0246 protein Bmul_1054/BMULJ_02209 OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=Bmul_1054 PE=3 SV=1
Length = 260
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 310 PLFSDFPGGHYRIYDDCSSNANDTLKRF--ENNVGYPLGESLISYERYMVEAPGRTLNSY 367
P+F D+ GG Y+I + A + R+ EN + P + E Y +A ++Y
Sbjct: 193 PVFEDWKGGRYKIISFHAKRARGLMARYVVENRIAEPKALQAFAMEGYAFDAAASNDSTY 252
Query: 368 IY 369
+Y
Sbjct: 253 VY 254
>sp|F4NUJ6|TRM5_BATDJ tRNA (guanine(37)-N1)-methyltransferase OS=Batrachochytrium
dendrobatidis (strain JAM81 / FGSC 10211) GN=TRM5 PE=3
SV=1
Length = 475
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 313 SDFPGGHYRIYDDCSSNANDTLKRFENNVGYPLGESLISYERYMVEAPGRTL 364
SD P H + + D ++R E +G PLG +LI AP + +
Sbjct: 375 SDLPTIHCHCFSNAKDVKADVIERVERVIGMPLGSNLIMVHSVRTVAPNKDM 426
>sp|B4EEQ6|Y2278_BURCJ UPF0246 protein BceJ2315_22780 OS=Burkholderia cepacia (strain
J2315 / LMG 16656) GN=BceJ2315_22780 PE=3 SV=1
Length = 260
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 280 GRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRF-- 337
G A V C+ E+ + + + P+F D+ GG Y+I + A + RF
Sbjct: 164 GAARVLVNCASTEYFK-SVKPKLLAAPVITPVFEDWKGGRYKIISFHAKRARGLMARFVV 222
Query: 338 ENNVGYPLGESLISYERYMVEAPGRTLNSYIY 369
EN + P + E Y +A ++Y+Y
Sbjct: 223 ENRITDPKALKAFATEGYAFDAAASNDSTYVY 254
>sp|Q0BDF6|Y2261_BURCM UPF0246 protein Bamb_2261 OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=Bamb_2261 PE=3 SV=1
Length = 260
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 280 GRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRF-- 337
G A V C+ E+ + + + P+F D+ GG Y+I + A + R+
Sbjct: 164 GVARVLVNCASTEYFK-SVKPKLLAAPVVTPVFEDWKGGRYKIISFHAKRARGLMARYIV 222
Query: 338 ENNVGYPLGESLISYERYMVEAPGRTLNSYIY 369
EN + P + E Y +A ++Y+Y
Sbjct: 223 ENRIAEPAALKDFALEDYAFDAAASNDSTYVY 254
>sp|A4JGA4|Y2308_BURVG UPF0246 protein Bcep1808_2308 OS=Burkholderia vietnamiensis (strain
G4 / LMG 22486) GN=Bcep1808_2308 PE=3 SV=1
Length = 260
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 310 PLFSDFPGGHYRIYDDCSSNANDTLKRF--ENNVGYPLGESLISYERYMVEAPGRTLNSY 367
P+F D+ GG Y+I + A + R+ EN + P + E Y +A ++Y
Sbjct: 193 PVFEDWKGGRYKIISFHAKRARGLMARYIVENRIAEPAALKDFALEGYAFDAAASNDSTY 252
Query: 368 IY 369
+Y
Sbjct: 253 VY 254
>sp|Q39EH1|Y5551_BURS3 UPF0246 protein Bcep18194_A5551 OS=Burkholderia sp. (strain 383)
GN=Bcep18194_A5551 PE=3 SV=1
Length = 260
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 280 GRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRF-- 337
G A V C+ E+ + + + P+F D+ GG Y+I + A + RF
Sbjct: 164 GAARVLVNCASTEYFK-SVKPKLLAAPVITPVFEDWKGGRYKIISFHAKRARGLMARFIV 222
Query: 338 ENNVGYPLGESLISYERYMVEAPGRTLNSYIY 369
EN + P + E Y +A ++Y+Y
Sbjct: 223 ENRITDPKALKDFATEGYAFDAAASNDSTYVY 254
>sp|A0K8Z7|Y2223_BURCH UPF0246 protein Bcen2424_2223 OS=Burkholderia cenocepacia (strain
HI2424) GN=Bcen2424_2223 PE=3 SV=1
Length = 260
Score = 32.3 bits (72), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 280 GRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRF-- 337
G A V C+ E+ + + + P+F D+ GG Y+I + A + RF
Sbjct: 164 GAARVLVNCASTEYFK-SVKPKLLAAPVITPVFEDWKGGRYKIISFHAKRARGLMARFVV 222
Query: 338 ENNVGYPLGESLISYERYMVEAPGRTLNSYIY 369
EN + P + E Y +A ++Y+Y
Sbjct: 223 ENRITDPNALKEFATEGYAFDAAASNDSTYVY 254
>sp|Q1BV39|Y1611_BURCA UPF0246 protein Bcen_1611 OS=Burkholderia cenocepacia (strain AU
1054) GN=Bcen_1611 PE=3 SV=1
Length = 260
Score = 32.3 bits (72), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 280 GRAGNCVGCSIHEFPRFDISEHSQTRLIGLPLFSDFPGGHYRIYDDCSSNANDTLKRF-- 337
G A V C+ E+ + + + P+F D+ GG Y+I + A + RF
Sbjct: 164 GAARVLVNCASTEYFK-SVKPKLLAAPVITPVFEDWKGGRYKIISFHAKRARGLMARFVV 222
Query: 338 ENNVGYPLGESLISYERYMVEAPGRTLNSYIY 369
EN + P + E Y +A ++Y+Y
Sbjct: 223 ENRITDPNALKEFATEGYAFDAAASNDSTYVY 254
>sp|P21875|VLP21_BORHE Variable large protein 21 OS=Borrelia hermsii GN=vlp21 PE=1 SV=1
Length = 364
Score = 32.0 bits (71), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 217 PAGNKKSGGMSCNEY---TGKRSRPLQENPLYSRYPHTNSTTSFLNIQRKRPKIVGGYFN 273
AG +K G S +E GK + EN YS + T F + + VGGYFN
Sbjct: 38 AAGGEKQGAGSLSEVLMEVGKSA----ENAFYSFLELVSDTLGFTAKSTTKKEDVGGYFN 93
Query: 274 SVREDFGRAGN 284
S+ G A N
Sbjct: 94 SLGGKLGEASN 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,142,501
Number of Sequences: 539616
Number of extensions: 7124090
Number of successful extensions: 11880
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 11863
Number of HSP's gapped (non-prelim): 19
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)