Query 016441
Match_columns 389
No_of_seqs 150 out of 286
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:53:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10354 DUF2431: Domain of un 100.0 7.2E-64 1.6E-68 450.7 17.0 166 28-194 1-166 (166)
2 KOG4174 Uncharacterized conser 100.0 1.9E-56 4.2E-61 426.7 16.7 213 5-217 38-256 (282)
3 TIGR00091 tRNA (guanine-N(7)-) 97.9 3.4E-05 7.4E-10 70.4 6.8 148 15-177 7-155 (194)
4 KOG4174 Uncharacterized conser 97.7 4.8E-06 1E-10 81.5 -2.3 128 35-184 1-128 (282)
5 PF05175 MTS: Methyltransferas 97.4 0.00061 1.3E-08 60.9 8.0 114 23-157 31-144 (170)
6 PRK14968 putative methyltransf 97.4 0.012 2.5E-07 51.8 15.4 139 22-178 22-171 (188)
7 TIGR02752 MenG_heptapren 2-hep 97.2 0.013 2.7E-07 53.9 14.2 109 21-153 43-151 (231)
8 PRK09489 rsmC 16S ribosomal RN 97.2 0.0023 5.1E-08 64.3 10.1 114 25-162 198-312 (342)
9 PF13659 Methyltransf_26: Meth 97.2 0.0006 1.3E-08 55.7 4.8 115 25-154 2-116 (117)
10 PRK00107 gidB 16S rRNA methylt 97.1 0.012 2.5E-07 54.5 13.5 129 23-184 45-173 (187)
11 TIGR00138 gidB 16S rRNA methyl 97.1 0.0066 1.4E-07 55.5 11.0 132 23-184 42-173 (181)
12 TIGR03534 RF_mod_PrmC protein- 97.0 0.014 3E-07 53.8 12.7 140 24-178 88-239 (251)
13 PRK14902 16S rRNA methyltransf 96.9 0.015 3.3E-07 59.8 13.7 146 22-177 249-405 (444)
14 TIGR01177 conserved hypothetic 96.9 0.02 4.2E-07 56.7 13.8 134 21-178 180-313 (329)
15 PRK14901 16S rRNA methyltransf 96.9 0.026 5.7E-07 58.1 14.9 148 22-176 251-409 (434)
16 PRK11873 arsM arsenite S-adeno 96.9 0.037 8E-07 52.5 14.6 139 20-182 74-232 (272)
17 smart00828 PKS_MT Methyltransf 96.8 0.039 8.4E-07 50.5 14.0 133 25-184 1-148 (224)
18 PRK11783 rlmL 23S rRNA m(2)G24 96.8 0.016 3.4E-07 63.4 12.9 160 12-187 527-688 (702)
19 PRK10901 16S rRNA methyltransf 96.7 0.038 8.3E-07 56.8 14.6 145 22-177 243-398 (427)
20 PRK09328 N5-glutamine S-adenos 96.7 0.034 7.4E-07 52.3 13.2 142 22-178 107-260 (275)
21 TIGR00446 nop2p NOL1/NOP2/sun 96.7 0.036 7.7E-07 53.4 13.5 143 22-175 70-223 (264)
22 PRK15001 SAM-dependent 23S rib 96.7 0.0085 1.9E-07 61.4 9.7 135 24-180 229-373 (378)
23 PRK14967 putative methyltransf 96.7 0.057 1.2E-06 50.2 14.3 141 21-177 34-181 (223)
24 PRK14904 16S rRNA methyltransf 96.7 0.045 9.7E-07 56.5 14.9 142 22-177 249-403 (445)
25 TIGR00537 hemK_rel_arch HemK-r 96.7 0.078 1.7E-06 47.4 14.6 138 23-178 19-163 (179)
26 TIGR03704 PrmC_rel_meth putati 96.6 0.048 1.1E-06 52.3 13.5 141 22-177 85-237 (251)
27 PRK00121 trmB tRNA (guanine-N( 96.6 0.0079 1.7E-07 55.5 7.6 144 16-176 32-177 (202)
28 PF02353 CMAS: Mycolic acid cy 96.6 0.034 7.3E-07 54.4 12.2 129 21-181 60-218 (273)
29 TIGR03533 L3_gln_methyl protei 96.5 0.055 1.2E-06 52.8 13.6 135 23-173 121-267 (284)
30 PRK14903 16S rRNA methyltransf 96.5 0.064 1.4E-06 55.5 14.7 144 22-177 236-392 (431)
31 PRK01581 speE spermidine synth 96.4 0.024 5.2E-07 58.4 10.7 143 22-181 149-298 (374)
32 PRK03612 spermidine synthase; 96.4 0.025 5.5E-07 59.8 11.2 136 22-173 296-437 (521)
33 TIGR00438 rrmJ cell division p 96.3 0.043 9.3E-07 49.5 10.4 118 19-157 28-150 (188)
34 PF12847 Methyltransf_18: Meth 96.3 0.084 1.8E-06 42.6 11.0 112 23-154 1-112 (112)
35 cd02440 AdoMet_MTases S-adenos 96.2 0.066 1.4E-06 40.0 9.7 103 26-152 1-103 (107)
36 TIGR00563 rsmB ribosomal RNA s 96.2 0.16 3.5E-06 52.1 15.4 142 22-175 237-392 (426)
37 PRK15128 23S rRNA m(5)C1962 me 96.1 0.054 1.2E-06 55.7 11.3 160 13-187 210-377 (396)
38 PRK14966 unknown domain/N5-glu 96.1 0.1 2.2E-06 54.7 13.3 144 21-178 249-403 (423)
39 PRK11188 rrmJ 23S rRNA methylt 96.0 0.05 1.1E-06 50.8 9.6 119 19-158 47-170 (209)
40 TIGR02469 CbiT precorrin-6Y C5 95.9 0.18 3.9E-06 40.9 11.5 105 22-154 18-123 (124)
41 PRK05134 bifunctional 3-demeth 95.8 0.16 3.4E-06 46.9 12.1 127 23-178 48-203 (233)
42 PRK00216 ubiE ubiquinone/menaq 95.8 0.23 5E-06 45.0 13.0 107 23-152 51-157 (239)
43 PRK04457 spermidine synthase; 95.8 0.022 4.8E-07 55.1 6.4 116 23-158 66-182 (262)
44 PRK08317 hypothetical protein; 95.8 0.34 7.4E-06 43.5 13.7 110 19-154 15-125 (241)
45 TIGR00417 speE spermidine synt 95.7 0.063 1.4E-06 51.8 9.2 109 24-152 73-185 (270)
46 PLN02233 ubiquinone biosynthes 95.6 0.53 1.2E-05 45.3 15.3 109 22-154 72-183 (261)
47 PLN02244 tocopherol O-methyltr 95.6 0.46 1E-05 47.5 15.2 138 22-189 117-287 (340)
48 PRK14121 tRNA (guanine-N(7)-)- 95.6 0.094 2E-06 54.3 10.5 133 24-175 123-256 (390)
49 PRK11805 N5-glutamine S-adenos 95.6 0.25 5.5E-06 49.0 13.2 135 25-175 135-281 (307)
50 PF02390 Methyltransf_4: Putat 95.5 0.016 3.4E-07 53.9 4.3 150 13-177 6-157 (195)
51 PRK01544 bifunctional N5-gluta 95.5 0.14 3E-06 54.3 11.7 140 24-178 139-291 (506)
52 PRK08287 cobalt-precorrin-6Y C 95.5 0.22 4.7E-06 44.9 11.4 128 22-181 30-157 (187)
53 PF13847 Methyltransf_31: Meth 95.5 0.091 2E-06 45.5 8.5 111 22-155 2-112 (152)
54 TIGR01934 MenG_MenH_UbiE ubiqu 95.4 0.37 8E-06 43.2 12.7 104 23-152 39-142 (223)
55 TIGR00080 pimt protein-L-isoas 95.4 0.25 5.4E-06 45.7 11.8 104 22-155 76-179 (215)
56 PRK04266 fibrillarin; Provisio 95.3 0.52 1.1E-05 45.0 13.8 136 20-182 69-212 (226)
57 PRK00377 cbiT cobalt-precorrin 95.2 0.35 7.6E-06 44.2 11.9 133 21-181 38-171 (198)
58 PRK00811 spermidine synthase; 95.2 0.19 4E-06 49.2 10.7 109 23-152 76-190 (283)
59 PRK11036 putative S-adenosyl-L 95.1 0.34 7.3E-06 45.9 12.0 106 22-155 43-151 (255)
60 PRK11207 tellurite resistance 95.0 1.5 3.2E-05 40.3 15.6 107 22-154 29-136 (197)
61 TIGR00536 hemK_fam HemK family 94.8 0.47 1E-05 46.1 12.3 137 25-177 116-266 (284)
62 PTZ00098 phosphoethanolamine N 94.8 0.62 1.3E-05 44.9 12.9 105 21-153 50-156 (263)
63 PLN02490 MPBQ/MSBQ methyltrans 94.8 0.61 1.3E-05 47.4 13.4 138 22-187 112-263 (340)
64 TIGR01983 UbiG ubiquinone bios 94.4 0.8 1.7E-05 41.7 12.0 103 23-155 45-151 (224)
65 COG1041 Predicted DNA modifica 94.3 0.53 1.2E-05 48.3 11.7 122 29-178 205-328 (347)
66 COG2813 RsmC 16S RNA G1207 met 94.3 0.44 9.6E-06 48.0 11.0 133 24-179 159-298 (300)
67 COG0220 Predicted S-adenosylme 94.3 0.25 5.5E-06 47.5 8.9 140 14-170 37-180 (227)
68 COG4123 Predicted O-methyltran 94.1 0.51 1.1E-05 46.3 10.7 149 16-178 38-192 (248)
69 COG0144 Sun tRNA and rRNA cyto 94.1 0.78 1.7E-05 46.6 12.4 104 72-177 198-314 (355)
70 PRK01544 bifunctional N5-gluta 93.9 0.29 6.4E-06 51.8 9.2 135 24-177 348-485 (506)
71 PRK13944 protein-L-isoaspartat 93.8 1 2.2E-05 41.6 11.6 106 22-156 71-176 (205)
72 PLN02366 spermidine synthase 93.7 0.34 7.3E-06 48.5 8.9 112 22-150 90-203 (308)
73 TIGR02716 C20_methyl_CrtF C-20 93.7 2.1 4.6E-05 41.6 14.1 106 20-152 146-253 (306)
74 PTZ00146 fibrillarin; Provisio 93.3 4 8.8E-05 41.0 15.6 134 20-181 129-272 (293)
75 PRK15451 tRNA cmo(5)U34 methyl 93.3 0.76 1.7E-05 43.5 10.1 109 22-153 55-164 (247)
76 PRK11705 cyclopropane fatty ac 93.0 0.72 1.6E-05 47.2 10.2 100 22-153 166-267 (383)
77 PRK06922 hypothetical protein; 92.9 0.74 1.6E-05 51.0 10.6 118 18-152 413-536 (677)
78 PRK01683 trans-aconitate 2-met 92.7 2 4.3E-05 40.4 12.0 103 22-155 30-132 (258)
79 PF02475 Met_10: Met-10+ like- 92.7 0.25 5.3E-06 46.7 5.8 102 20-150 98-199 (200)
80 TIGR00740 methyltransferase, p 92.6 1.5 3.3E-05 40.9 11.0 108 22-152 52-160 (239)
81 PHA03411 putative methyltransf 92.6 1.8 4E-05 43.2 12.0 135 24-177 65-211 (279)
82 TIGR00452 methyltransferase, p 92.5 3.7 8E-05 41.3 14.2 130 23-180 121-273 (314)
83 PRK13943 protein-L-isoaspartat 92.2 1.5 3.3E-05 44.2 11.0 105 21-155 78-182 (322)
84 PLN02336 phosphoethanolamine N 92.1 2.1 4.6E-05 44.1 12.2 103 21-153 264-369 (475)
85 PF01861 DUF43: Protein of unk 92.0 0.39 8.4E-06 47.1 6.4 130 23-180 44-178 (243)
86 PRK00312 pcm protein-L-isoaspa 91.8 2.2 4.8E-05 39.1 10.9 100 22-154 77-176 (212)
87 PF01564 Spermine_synth: Sperm 91.7 0.28 6E-06 47.2 5.1 133 23-173 76-213 (246)
88 PRK14103 trans-aconitate 2-met 91.7 2.4 5.2E-05 40.1 11.2 100 22-154 28-127 (255)
89 TIGR00477 tehB tellurite resis 91.6 2.1 4.6E-05 39.2 10.5 102 24-153 31-134 (195)
90 PF01170 UPF0020: Putative RNA 91.3 0.82 1.8E-05 41.8 7.4 126 29-176 36-167 (179)
91 COG2230 Cfa Cyclopropane fatty 91.2 2.4 5.3E-05 42.4 11.1 137 20-184 69-227 (283)
92 PLN02396 hexaprenyldihydroxybe 91.2 3.2 6.9E-05 41.9 12.1 130 23-181 131-290 (322)
93 PF13649 Methyltransf_25: Meth 91.1 0.3 6.5E-06 39.4 4.0 98 27-147 1-101 (101)
94 PRK11933 yebU rRNA (cytosine-C 91.1 3.4 7.3E-05 43.9 12.7 137 23-171 113-261 (470)
95 PRK00517 prmA ribosomal protei 90.8 7 0.00015 37.2 13.5 120 22-179 118-237 (250)
96 COG2890 HemK Methylase of poly 90.7 6.4 0.00014 38.8 13.5 137 26-178 113-261 (280)
97 PF08241 Methyltransf_11: Meth 90.7 0.96 2.1E-05 34.5 6.3 95 28-151 1-95 (95)
98 TIGR00479 rumA 23S rRNA (uraci 90.5 1.8 3.8E-05 44.4 9.8 135 22-188 291-426 (431)
99 PF13489 Methyltransf_23: Meth 90.4 0.64 1.4E-05 39.3 5.5 120 21-177 20-160 (161)
100 PRK13942 protein-L-isoaspartat 90.1 3.2 7E-05 38.6 10.4 104 22-155 75-178 (212)
101 PRK15068 tRNA mo(5)U34 methylt 89.9 6.4 0.00014 39.3 12.9 132 23-183 122-277 (322)
102 PF01135 PCMT: Protein-L-isoas 89.8 0.82 1.8E-05 43.3 6.2 107 21-157 70-176 (209)
103 PRK13168 rumA 23S rRNA m(5)U19 89.4 6.3 0.00014 40.9 12.8 135 22-188 296-430 (443)
104 TIGR02021 BchM-ChlM magnesium 89.3 4.6 0.0001 37.1 10.6 137 16-182 47-208 (219)
105 PRK00536 speE spermidine synth 89.1 2.7 5.9E-05 41.4 9.4 112 24-170 73-190 (262)
106 COG2519 GCD14 tRNA(1-methylade 89.1 3.6 7.9E-05 40.8 10.2 106 21-157 92-199 (256)
107 TIGR02072 BioC biotin biosynth 89.1 4.1 8.9E-05 36.7 10.0 102 24-154 35-136 (240)
108 KOG2904 Predicted methyltransf 88.8 4.4 9.5E-05 41.2 10.7 121 26-154 151-286 (328)
109 KOG1122 tRNA and rRNA cytosine 88.5 4.2 9.1E-05 43.2 10.8 110 73-184 283-404 (460)
110 PRK12335 tellurite resistance 88.5 4.6 0.0001 39.2 10.5 101 23-151 120-221 (287)
111 PLN02823 spermine synthase 87.4 1.7 3.8E-05 44.0 7.1 114 23-151 103-218 (336)
112 TIGR00406 prmA ribosomal prote 86.8 10 0.00022 37.0 11.8 101 23-154 159-260 (288)
113 PF10672 Methyltrans_SAM: S-ad 86.1 0.24 5.3E-06 49.2 0.2 155 12-188 112-273 (286)
114 PF08704 GCD14: tRNA methyltra 85.4 3.8 8.3E-05 40.0 8.0 131 22-182 39-173 (247)
115 PRK06940 short chain dehydroge 84.8 6.2 0.00014 37.4 9.1 77 25-111 3-85 (275)
116 PRK07580 Mg-protoporphyrin IX 84.8 13 0.00029 33.8 10.9 135 16-184 54-218 (230)
117 PLN02336 phosphoethanolamine N 84.5 8.4 0.00018 39.8 10.5 105 23-152 37-141 (475)
118 PRK06202 hypothetical protein; 83.5 24 0.00051 32.8 12.2 79 22-111 59-138 (232)
119 PRK10258 biotin biosynthesis p 82.1 13 0.00028 34.9 9.9 102 23-156 42-143 (251)
120 PRK10909 rsmD 16S rRNA m(2)G96 81.9 11 0.00023 35.5 9.2 114 17-156 47-162 (199)
121 COG1092 Predicted SAM-dependen 81.6 4.4 9.5E-05 42.3 7.1 162 12-190 206-377 (393)
122 COG0421 SpeE Spermidine syntha 81.2 4.5 9.7E-05 40.3 6.8 110 25-152 78-189 (282)
123 PLN02232 ubiquinone biosynthes 80.9 5.9 0.00013 35.2 6.9 57 80-155 27-83 (160)
124 COG2520 Predicted methyltransf 80.7 4.4 9.5E-05 41.6 6.6 122 21-173 186-313 (341)
125 PLN02781 Probable caffeoyl-CoA 80.6 5 0.00011 38.2 6.7 113 17-152 62-177 (234)
126 PRK07402 precorrin-6B methylas 80.6 33 0.00071 31.1 11.7 106 21-154 38-143 (196)
127 COG2227 UbiG 2-polyprenyl-3-me 80.4 11 0.00025 37.1 9.1 101 23-155 59-163 (243)
128 PRK03522 rumB 23S rRNA methylu 80.2 38 0.00083 33.5 12.9 136 16-188 167-302 (315)
129 TIGR02081 metW methionine bios 78.8 35 0.00076 30.9 11.3 72 22-111 12-84 (194)
130 PLN03075 nicotianamine synthas 78.5 20 0.00043 36.2 10.4 112 23-156 123-236 (296)
131 TIGR03840 TMPT_Se_Te thiopurin 77.9 36 0.00079 32.1 11.5 139 22-181 33-190 (213)
132 PRK11088 rrmA 23S rRNA methylt 77.9 21 0.00046 34.3 10.1 109 23-167 85-193 (272)
133 PRK02842 light-independent pro 77.4 2.4 5.3E-05 43.8 3.7 68 18-93 284-353 (427)
134 PF08242 Methyltransf_12: Meth 76.6 0.87 1.9E-05 36.3 0.2 97 30-149 3-99 (99)
135 PF01189 Nol1_Nop2_Fmu: NOL1/N 76.5 3.5 7.7E-05 40.5 4.4 144 25-177 87-245 (283)
136 PRK11727 23S rRNA mA1618 methy 74.7 13 0.00029 37.6 8.1 124 23-154 114-248 (321)
137 COG2518 Pcm Protein-L-isoaspar 74.4 14 0.00031 35.6 7.8 75 22-109 71-145 (209)
138 PRK06128 oxidoreductase; Provi 73.9 31 0.00067 33.0 10.0 80 24-110 55-142 (300)
139 PF01209 Ubie_methyltran: ubiE 73.8 12 0.00025 35.9 7.0 109 22-154 46-154 (233)
140 COG2226 UbiE Methylase involve 69.1 54 0.0012 32.1 10.5 108 23-158 51-160 (238)
141 PRK09489 rsmC 16S ribosomal RN 68.5 29 0.00063 35.2 8.9 97 23-156 19-115 (342)
142 TIGR02987 met_A_Alw26 type II 68.5 37 0.00081 35.9 10.0 129 25-156 33-199 (524)
143 PLN02476 O-methyltransferase 67.5 22 0.00048 35.5 7.6 114 16-152 111-227 (278)
144 PRK04338 N(2),N(2)-dimethylgua 65.2 34 0.00073 35.4 8.7 104 25-157 59-162 (382)
145 PRK12744 short chain dehydroge 64.6 58 0.0013 30.0 9.4 81 24-109 8-96 (257)
146 PRK07985 oxidoreductase; Provi 63.4 56 0.0012 31.4 9.4 80 24-110 49-136 (294)
147 PF08468 MTS_N: Methyltransfer 63.1 17 0.00037 33.1 5.5 93 23-153 12-105 (155)
148 COG2242 CobL Precorrin-6B meth 62.9 1.2E+02 0.0026 29.0 11.2 107 22-157 33-139 (187)
149 TIGR03587 Pse_Me-ase pseudamin 62.9 1.3E+02 0.0029 28.0 11.5 151 16-215 36-203 (204)
150 PRK07806 short chain dehydroge 62.5 37 0.0008 30.9 7.6 119 24-151 6-132 (248)
151 KOG4300 Predicted methyltransf 62.4 28 0.00061 34.4 7.0 109 26-166 79-195 (252)
152 TIGR00308 TRM1 tRNA(guanine-26 62.2 26 0.00056 36.2 7.2 105 26-157 47-151 (374)
153 PRK09880 L-idonate 5-dehydroge 62.2 62 0.0013 31.6 9.6 96 23-152 169-265 (343)
154 PLN02672 methionine S-methyltr 61.8 1E+02 0.0022 36.6 12.5 142 24-178 119-301 (1082)
155 PHA03412 putative methyltransf 60.8 42 0.00092 33.1 8.1 107 24-148 50-158 (241)
156 PRK13255 thiopurine S-methyltr 60.2 1.5E+02 0.0032 28.1 11.5 112 22-154 36-157 (218)
157 PF00891 Methyltransf_2: O-met 59.9 73 0.0016 29.7 9.3 102 18-152 95-198 (241)
158 COG4122 Predicted O-methyltran 59.8 27 0.00059 33.8 6.5 113 16-152 52-165 (219)
159 KOG1270 Methyltransferases [Co 59.4 55 0.0012 33.1 8.7 108 24-155 90-197 (282)
160 COG3963 Phospholipid N-methylt 59.1 42 0.00091 32.2 7.4 103 20-147 45-150 (194)
161 TIGR02085 meth_trns_rumB 23S r 58.7 1.4E+02 0.003 30.5 11.7 129 24-188 234-362 (374)
162 KOG3191 Predicted N6-DNA-methy 58.4 1.3E+02 0.0027 29.4 10.5 120 27-158 47-174 (209)
163 PF05148 Methyltransf_8: Hypot 57.1 17 0.00037 35.4 4.6 76 87-178 108-183 (219)
164 TIGR01279 DPOR_bchN light-inde 55.5 12 0.00026 38.6 3.5 68 19-94 269-337 (407)
165 smart00138 MeTrc Methyltransfe 54.9 98 0.0021 30.0 9.5 47 100-158 201-247 (264)
166 PF10294 Methyltransf_16: Puta 54.4 31 0.00067 31.2 5.7 116 19-156 41-159 (173)
167 COG0003 ArsA Predicted ATPase 54.1 21 0.00046 36.3 5.0 89 25-115 31-138 (322)
168 KOG2198 tRNA cytosine-5-methyl 54.0 1.1E+02 0.0025 32.1 10.2 95 73-168 200-311 (375)
169 PRK10309 galactitol-1-phosphat 52.7 68 0.0015 31.1 8.1 100 21-152 158-259 (347)
170 TIGR00095 RNA methyltransferas 52.5 1.2E+02 0.0027 27.9 9.3 120 17-157 43-163 (189)
171 cd00316 Oxidoreductase_nitroge 52.0 21 0.00046 35.5 4.6 67 20-94 275-342 (399)
172 cd00550 ArsA_ATPase Oxyanion-t 51.7 17 0.00037 34.9 3.7 85 24-115 28-137 (254)
173 PRK06079 enoyl-(acyl carrier p 51.7 1E+02 0.0022 28.7 8.8 78 23-110 6-91 (252)
174 PRK06701 short chain dehydroge 51.6 1E+02 0.0022 29.6 9.0 78 24-109 46-131 (290)
175 PF06080 DUF938: Protein of un 51.4 1.8E+02 0.0039 28.1 10.4 141 20-181 21-193 (204)
176 PF00106 adh_short: short chai 51.1 66 0.0014 27.2 6.9 81 26-114 2-92 (167)
177 PRK06077 fabG 3-ketoacyl-(acyl 50.8 1.4E+02 0.003 27.1 9.3 80 24-111 6-93 (252)
178 PRK08159 enoyl-(acyl carrier p 50.4 1.3E+02 0.0028 28.6 9.4 77 23-110 9-96 (272)
179 PRK06603 enoyl-(acyl carrier p 50.2 1.3E+02 0.0029 28.1 9.4 79 23-110 7-94 (260)
180 COG4262 Predicted spermidine s 49.9 1.1E+02 0.0024 32.8 9.3 132 23-175 289-431 (508)
181 cd01979 Pchlide_reductase_N Pc 49.7 15 0.00032 37.6 3.1 31 21-54 273-305 (396)
182 PRK13699 putative methylase; P 49.6 64 0.0014 30.8 7.2 93 82-184 3-100 (227)
183 PRK08085 gluconate 5-dehydroge 48.6 1.6E+02 0.0035 26.9 9.5 79 24-111 9-95 (254)
184 PRK13656 trans-2-enoyl-CoA red 48.5 43 0.00093 35.3 6.3 88 22-110 39-139 (398)
185 PRK07533 enoyl-(acyl carrier p 47.9 1.3E+02 0.0029 28.0 9.0 78 24-110 10-96 (258)
186 PRK08415 enoyl-(acyl carrier p 47.9 1.3E+02 0.0028 28.8 9.0 74 24-109 5-90 (274)
187 PRK07889 enoyl-(acyl carrier p 47.8 1.2E+02 0.0026 28.4 8.6 79 24-110 7-93 (256)
188 cd08294 leukotriene_B4_DH_like 47.0 69 0.0015 30.3 7.0 97 20-151 140-239 (329)
189 PLN02589 caffeoyl-CoA O-methyl 46.9 55 0.0012 32.0 6.4 111 18-151 74-188 (247)
190 PF01522 Polysacc_deac_1: Poly 46.7 69 0.0015 26.0 6.1 111 27-175 9-122 (123)
191 TIGR02822 adh_fam_2 zinc-bindi 46.5 1.9E+02 0.0041 28.3 10.1 90 20-151 162-252 (329)
192 cd05188 MDR Medium chain reduc 45.4 2.3E+02 0.0049 25.4 10.6 96 21-152 132-231 (271)
193 TIGR02825 B4_12hDH leukotriene 45.3 86 0.0019 30.0 7.4 97 20-151 135-235 (325)
194 PRK05599 hypothetical protein; 44.7 61 0.0013 30.0 6.1 76 26-110 2-85 (246)
195 PRK05031 tRNA (uracil-5-)-meth 44.5 1.1E+02 0.0024 31.1 8.4 129 25-189 208-350 (362)
196 TIGR03438 probable methyltrans 44.0 2.1E+02 0.0046 28.1 10.1 116 22-156 62-180 (301)
197 KOG1562 Spermidine synthase [A 43.6 32 0.00069 35.4 4.3 127 23-170 121-248 (337)
198 PRK08340 glucose-1-dehydrogena 43.4 49 0.0011 30.6 5.3 76 26-110 2-84 (259)
199 cd08230 glucose_DH Glucose deh 43.4 2E+02 0.0043 28.2 9.7 94 22-151 171-267 (355)
200 PRK06113 7-alpha-hydroxysteroi 42.9 2.7E+02 0.0059 25.6 10.4 81 24-113 11-99 (255)
201 PRK06953 short chain dehydroge 41.7 2.2E+02 0.0047 25.6 9.1 73 25-111 2-79 (222)
202 COG2265 TrmA SAM-dependent met 41.3 1.1E+02 0.0024 32.4 8.0 131 16-188 287-426 (432)
203 PRK06172 short chain dehydroge 41.0 2.4E+02 0.0052 25.7 9.4 79 24-111 7-93 (253)
204 KOG1661 Protein-L-isoaspartate 40.7 2E+02 0.0043 28.6 9.0 107 20-155 79-195 (237)
205 PRK12481 2-deoxy-D-gluconate 3 40.6 62 0.0013 30.0 5.5 76 23-109 7-90 (251)
206 PRK11524 putative methyltransf 40.5 53 0.0012 32.0 5.3 93 84-182 11-105 (284)
207 PRK08303 short chain dehydroge 39.8 2.4E+02 0.0051 27.6 9.6 85 24-110 8-103 (305)
208 PRK10669 putative cation:proto 39.7 75 0.0016 33.9 6.6 75 22-111 415-490 (558)
209 PRK12939 short chain dehydroge 39.3 1.7E+02 0.0036 26.4 8.0 79 23-110 6-92 (250)
210 PRK08594 enoyl-(acyl carrier p 38.9 2.4E+02 0.0052 26.4 9.2 80 24-109 7-94 (257)
211 PRK05786 fabG 3-ketoacyl-(acyl 38.5 2.1E+02 0.0047 25.6 8.5 121 24-153 5-135 (238)
212 PRK06124 gluconate 5-dehydroge 38.3 3.1E+02 0.0068 25.0 10.2 79 23-110 10-96 (256)
213 PRK06505 enoyl-(acyl carrier p 38.2 2E+02 0.0042 27.3 8.6 76 23-110 6-93 (271)
214 PF03610 EIIA-man: PTS system 37.9 59 0.0013 27.3 4.5 54 26-84 1-63 (116)
215 cd08254 hydroxyacyl_CoA_DH 6-h 37.7 1.4E+02 0.0029 28.3 7.4 100 19-152 161-262 (338)
216 smart00650 rADc Ribosomal RNA 37.5 2.1E+02 0.0045 25.3 8.1 77 22-113 12-88 (169)
217 KOG3045 Predicted RNA methylas 37.3 83 0.0018 32.2 6.0 63 98-175 224-286 (325)
218 PRK12859 3-ketoacyl-(acyl-carr 36.6 74 0.0016 29.5 5.3 88 24-111 6-105 (256)
219 PRK07666 fabG 3-ketoacyl-(acyl 36.6 2.3E+02 0.0049 25.6 8.4 79 24-111 7-93 (239)
220 PRK07102 short chain dehydroge 36.5 3.3E+02 0.0071 24.7 9.5 81 25-114 2-88 (243)
221 TIGR00824 EIIA-man PTS system, 36.3 84 0.0018 26.9 5.2 57 26-87 3-67 (116)
222 PRK07478 short chain dehydroge 36.1 3.4E+02 0.0074 24.8 10.1 78 24-112 6-93 (254)
223 cd02008 TPP_IOR_alpha Thiamine 35.6 40 0.00087 30.4 3.3 36 24-59 70-107 (178)
224 PRK07523 gluconate 5-dehydroge 35.6 96 0.0021 28.4 5.9 79 23-110 9-95 (255)
225 PRK14106 murD UDP-N-acetylmura 35.5 1.5E+02 0.0032 30.2 7.8 75 23-114 4-79 (450)
226 PRK12935 acetoacetyl-CoA reduc 35.0 3.5E+02 0.0075 24.5 9.5 79 23-109 5-91 (247)
227 PRK07454 short chain dehydroge 34.9 83 0.0018 28.5 5.3 79 22-109 4-90 (241)
228 TIGR01832 kduD 2-deoxy-D-gluco 34.8 97 0.0021 28.1 5.7 76 23-109 4-87 (248)
229 PF08659 KR: KR domain; Inter 34.2 1.2E+02 0.0027 27.2 6.2 62 26-94 2-67 (181)
230 PRK07035 short chain dehydroge 33.7 3.7E+02 0.008 24.5 9.4 80 24-112 8-95 (252)
231 PF01555 N6_N4_Mtase: DNA meth 33.3 1.9E+02 0.0042 25.6 7.3 61 123-184 26-87 (231)
232 KOG3889 Predicted gamma-butyro 33.3 79 0.0017 32.6 5.2 101 48-164 217-337 (371)
233 PF01596 Methyltransf_3: O-met 33.0 57 0.0012 30.9 4.0 112 18-152 40-154 (205)
234 PF14584 DUF4446: Protein of u 33.0 5.4 0.00012 36.5 -2.8 28 33-62 96-123 (151)
235 PRK06182 short chain dehydroge 32.9 2.1E+02 0.0045 26.7 7.7 74 24-111 3-83 (273)
236 PRK06997 enoyl-(acyl carrier p 32.8 2.7E+02 0.0059 26.1 8.6 75 23-109 5-91 (260)
237 PRK08862 short chain dehydroge 32.7 2.8E+02 0.006 25.7 8.5 78 24-110 5-91 (227)
238 PRK06949 short chain dehydroge 32.3 75 0.0016 29.0 4.6 80 23-111 8-95 (258)
239 PRK08936 glucose-1-dehydrogena 32.1 1.5E+02 0.0032 27.4 6.5 80 23-110 6-93 (261)
240 PTZ00338 dimethyladenosine tra 32.0 1.9E+02 0.0042 28.8 7.7 80 21-115 34-114 (294)
241 PF03848 TehB: Tellurite resis 31.4 2.7E+02 0.0058 26.4 8.1 100 21-151 28-131 (192)
242 KOG1271 Methyltransferases [Ge 31.1 1.5E+02 0.0033 29.0 6.5 128 24-180 68-205 (227)
243 PRK12826 3-ketoacyl-(acyl-carr 30.9 3E+02 0.0064 24.7 8.2 81 24-113 6-94 (251)
244 PRK08416 7-alpha-hydroxysteroi 30.5 1.4E+02 0.003 27.7 6.1 80 23-110 7-95 (260)
245 cd00006 PTS_IIA_man PTS_IIA, P 30.4 1.4E+02 0.003 25.4 5.6 57 26-87 2-66 (122)
246 PRK12824 acetoacetyl-CoA reduc 30.3 1.3E+02 0.0028 27.1 5.7 77 25-109 3-87 (245)
247 PRK05565 fabG 3-ketoacyl-(acyl 30.2 3.7E+02 0.008 24.1 8.6 81 24-113 5-94 (247)
248 PRK06181 short chain dehydroge 30.0 3.5E+02 0.0075 24.8 8.6 76 25-109 2-85 (263)
249 PRK07109 short chain dehydroge 29.7 1E+02 0.0023 30.4 5.4 78 23-109 7-92 (334)
250 TIGR02143 trmA_only tRNA (urac 29.6 3.1E+02 0.0067 27.9 8.8 131 25-189 199-341 (353)
251 PRK07370 enoyl-(acyl carrier p 29.4 2.1E+02 0.0046 26.7 7.1 83 23-111 5-96 (258)
252 PRK08339 short chain dehydroge 29.2 4.4E+02 0.0096 24.7 9.3 78 23-109 7-92 (263)
253 PRK07792 fabG 3-ketoacyl-(acyl 28.9 3.5E+02 0.0076 26.1 8.8 78 23-110 11-97 (306)
254 PRK07791 short chain dehydroge 28.8 1.5E+02 0.0033 28.3 6.2 86 23-109 5-99 (286)
255 PRK08217 fabG 3-ketoacyl-(acyl 28.7 1.3E+02 0.0028 27.1 5.5 79 23-111 4-91 (253)
256 PRK07062 short chain dehydroge 28.7 1.3E+02 0.0029 27.7 5.6 78 24-110 8-95 (265)
257 COG2264 PrmA Ribosomal protein 28.7 4.2E+02 0.0092 27.0 9.5 126 23-179 162-287 (300)
258 PRK12937 short chain dehydroge 28.7 4.3E+02 0.0094 23.7 9.1 79 24-110 5-91 (245)
259 COG0275 Predicted S-adenosylme 28.4 45 0.00097 34.3 2.6 36 121-156 210-247 (314)
260 PF02254 TrkA_N: TrkA-N domain 27.7 1.4E+02 0.0031 24.1 5.1 70 27-111 1-71 (116)
261 PRK06114 short chain dehydroge 27.6 1.6E+02 0.0034 27.2 5.9 81 23-111 7-95 (254)
262 cd01981 Pchlide_reductase_B Pc 27.5 1.8E+02 0.0038 30.0 6.8 28 20-47 297-326 (430)
263 PRK05867 short chain dehydroge 27.1 1.3E+02 0.0028 27.7 5.2 79 23-110 8-94 (253)
264 PRK09242 tropinone reductase; 26.6 4.9E+02 0.011 23.8 9.0 77 23-110 8-96 (257)
265 PRK00050 16S rRNA m(4)C1402 me 26.5 70 0.0015 32.2 3.5 36 121-156 202-239 (296)
266 PRK14896 ksgA 16S ribosomal RN 26.3 3.2E+02 0.0068 26.3 7.9 75 22-113 28-102 (258)
267 PF00070 Pyr_redox: Pyridine n 26.1 84 0.0018 24.3 3.3 65 26-95 1-69 (80)
268 PRK12743 oxidoreductase; Provi 26.0 5.2E+02 0.011 23.8 10.4 79 24-110 2-88 (256)
269 TIGR00006 S-adenosyl-methyltra 25.8 73 0.0016 32.3 3.6 37 120-156 205-243 (305)
270 PF06962 rRNA_methylase: Putat 25.7 89 0.0019 28.4 3.7 53 101-158 45-97 (140)
271 PF01936 NYN: NYN domain; Int 25.6 66 0.0014 27.0 2.8 30 24-53 97-126 (146)
272 PRK05875 short chain dehydroge 25.4 3.8E+02 0.0083 24.8 8.1 78 24-110 7-94 (276)
273 cd08243 quinone_oxidoreductase 25.4 4E+02 0.0088 24.6 8.2 95 20-151 139-236 (320)
274 PRK12771 putative glutamate sy 25.4 1.9E+02 0.0042 30.8 6.8 96 1-107 111-227 (564)
275 cd08242 MDR_like Medium chain 25.4 3.6E+02 0.0079 25.5 8.1 90 19-151 151-243 (319)
276 PRK07890 short chain dehydroge 25.4 1.7E+02 0.0036 26.7 5.6 80 22-110 3-90 (258)
277 PRK09496 trkA potassium transp 25.2 1.1E+02 0.0023 31.2 4.6 75 23-112 230-307 (453)
278 COG0116 Predicted N6-adenine-s 25.0 3.3E+02 0.0071 28.8 8.1 76 68-153 269-344 (381)
279 KOG3010 Methyltransferase [Gen 25.0 2.7E+02 0.0059 28.0 7.2 101 17-148 26-131 (261)
280 PRK07831 short chain dehydroge 24.5 1.7E+02 0.0036 27.0 5.5 81 23-111 16-106 (262)
281 cd02006 TPP_Gcl Thiamine pyrop 24.4 58 0.0013 30.0 2.4 36 24-59 76-112 (202)
282 PRK08265 short chain dehydroge 24.4 5.7E+02 0.012 23.7 9.2 76 23-110 5-88 (261)
283 PF05219 DREV: DREV methyltran 24.3 6E+02 0.013 25.7 9.5 96 23-154 94-189 (265)
284 PLN02253 xanthoxin dehydrogena 24.3 1.2E+02 0.0026 28.3 4.5 78 24-110 18-102 (280)
285 PRK09496 trkA potassium transp 24.3 1.9E+02 0.0041 29.3 6.2 53 25-91 1-54 (453)
286 PRK15001 SAM-dependent 23S rib 24.1 3.5E+02 0.0076 28.2 8.2 96 26-156 47-145 (378)
287 PF02384 N6_Mtase: N-6 DNA Met 24.1 54 0.0012 31.8 2.2 151 23-188 46-220 (311)
288 PF07368 DUF1487: Protein of u 24.0 3.7E+02 0.008 26.3 7.8 82 27-115 8-109 (215)
289 PRK12823 benD 1,6-dihydroxycyc 23.9 1.9E+02 0.0041 26.5 5.7 77 24-110 8-92 (260)
290 cd02015 TPP_AHAS Thiamine pyro 23.9 71 0.0015 28.9 2.8 36 24-59 69-105 (186)
291 PRK06947 glucose-1-dehydrogena 23.7 2.2E+02 0.0047 25.8 6.0 78 25-110 3-88 (248)
292 PRK06194 hypothetical protein; 23.7 1.3E+02 0.0029 28.0 4.7 79 24-111 6-92 (287)
293 PF03291 Pox_MCEL: mRNA cappin 23.7 37 0.0008 34.5 1.0 46 100-156 143-189 (331)
294 PRK07063 short chain dehydroge 23.2 1.7E+02 0.0037 26.9 5.3 77 24-109 7-93 (260)
295 PRK08690 enoyl-(acyl carrier p 23.1 1.7E+02 0.0037 27.4 5.3 75 23-109 5-91 (261)
296 PRK09072 short chain dehydroge 23.0 4.8E+02 0.01 24.0 8.2 76 24-110 5-88 (263)
297 PRK08643 acetoin reductase; Va 22.9 2E+02 0.0044 26.2 5.7 78 24-110 2-87 (256)
298 PRK07074 short chain dehydroge 22.8 4.5E+02 0.0098 24.0 7.9 77 24-110 2-85 (257)
299 cd01424 MGS_CPS_II Methylglyox 22.7 2E+02 0.0043 23.8 5.1 68 27-112 4-76 (110)
300 TIGR01861 ANFD nitrogenase iro 22.6 1E+02 0.0022 33.3 4.1 40 17-56 321-362 (513)
301 cd01965 Nitrogenase_MoFe_beta_ 22.6 1.2E+02 0.0027 31.2 4.6 70 20-94 295-365 (428)
302 PRK12745 3-ketoacyl-(acyl-carr 22.5 1.9E+02 0.0041 26.3 5.3 78 25-110 3-88 (256)
303 PRK08213 gluconate 5-dehydroge 22.4 6.1E+02 0.013 23.2 8.9 78 24-110 12-97 (259)
304 PRK07814 short chain dehydroge 22.2 1.6E+02 0.0035 27.3 4.9 75 24-109 10-94 (263)
305 PRK12748 3-ketoacyl-(acyl-carr 22.1 2.4E+02 0.0053 25.9 6.1 86 24-110 5-103 (256)
306 cd08291 ETR_like_1 2-enoyl thi 22.0 4.2E+02 0.009 25.3 7.8 50 23-86 142-194 (324)
307 cd01971 Nitrogenase_VnfN_like 21.7 3.1E+02 0.0068 28.4 7.3 37 21-57 290-328 (427)
308 PRK12429 3-hydroxybutyrate deh 21.5 1.9E+02 0.0041 26.2 5.1 79 24-111 4-90 (258)
309 TIGR00692 tdh L-threonine 3-de 21.3 2.1E+02 0.0045 27.7 5.6 52 22-86 160-212 (340)
310 KOG2915 tRNA(1-methyladenosine 21.1 5.2E+02 0.011 26.7 8.4 81 22-113 104-188 (314)
311 CHL00076 chlB photochlorophyll 21.0 2.6E+02 0.0056 30.1 6.7 38 20-57 301-340 (513)
312 PRK05866 short chain dehydroge 20.9 1.7E+02 0.0038 28.1 5.0 78 23-109 39-124 (293)
313 KOG4549 Magnesium-dependent ph 20.7 80 0.0017 29.0 2.4 29 58-86 38-66 (144)
314 KOG1198 Zinc-binding oxidoredu 20.6 3.1E+02 0.0067 28.1 6.9 47 20-67 154-202 (347)
315 PRK07097 gluconate 5-dehydroge 20.5 6.8E+02 0.015 23.1 9.9 81 24-113 10-98 (265)
316 PRK09422 ethanol-active dehydr 20.4 5.3E+02 0.012 24.5 8.2 53 19-84 158-211 (338)
317 PRK06139 short chain dehydroge 20.4 1.5E+02 0.0033 29.4 4.6 79 23-110 6-92 (330)
318 PRK05993 short chain dehydroge 20.4 1.7E+02 0.0037 27.5 4.7 72 24-109 4-83 (277)
No 1
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=100.00 E-value=7.2e-64 Score=450.74 Aligned_cols=166 Identities=51% Similarity=0.884 Sum_probs=163.0
Q ss_pred EEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceEE
Q 016441 28 LLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRII 107 (389)
Q Consensus 28 LLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrII 107 (389)
|||||||||||+|||++++++.+||||||||++++.+|||++.+|+++|++.|++|+||||||+|++++.++.++|||||
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence 79999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeCCCCCCC
Q 016441 108 FNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIEDYP 187 (389)
Q Consensus 108 FNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F~~~~YP 187 (389)
|||||+| .+.++++++|++||+||.+||+||+++|+++|+||||||+|+||++|||+++|+++||+|.++++|++++||
T Consensus 81 FNFPH~G-~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~~yp 159 (166)
T PF10354_consen 81 FNFPHVG-GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFDPSDYP 159 (166)
T ss_pred EeCCCCC-CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCCHHHCC
Confidence 9999999 588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccC
Q 016441 188 AYNNKRG 194 (389)
Q Consensus 188 GY~hKRt 194 (389)
||+||||
T Consensus 160 gY~~~rT 166 (166)
T PF10354_consen 160 GYEHKRT 166 (166)
T ss_pred CcccCCC
Confidence 9999997
No 2
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-56 Score=426.66 Aligned_cols=213 Identities=48% Similarity=0.782 Sum_probs=196.1
Q ss_pred hhhhhhhhhccccccCCCCCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHH-HHHHhhhhHHHHHHHHHhCCCE
Q 016441 5 AMASQCEEKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYD-DVIQKYKRAKSNLDNLKKLGTC 82 (389)
Q Consensus 5 ~~~~~~~~~~~K~~~~Yss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSee-eL~~KY~~A~~Ni~~Lr~~Gv~ 82 (389)
...+..+..+++|+.+|++.++||+|||||||||+||+.++| ++.||+|||||+++ ++.+||+++++|+++|+.+|+.
T Consensus 38 ~~~~~~~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~ 117 (282)
T KOG4174|consen 38 LQNLRMDGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT 117 (282)
T ss_pred HhhhhhccCceeeeeeccccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc
Confidence 345566788899999999999999999999999999999999 88999999999999 9999999999999999999999
Q ss_pred EEeccccCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHH-HhHHHHHHHHHhhHhccc-CCCeEEEEecCCCCCC
Q 016441 83 ILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIE-MHRSLVRDFFRNSSGMLR-DGGEVHVSHKTTVPFS 160 (389)
Q Consensus 83 VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir-~nr~LL~~FF~SA~~lL~-~~GeIHVTLk~g~PY~ 160 (389)
|+|+||||+|+.+++++.++||+|||||||.|..-+-++++++. .||+|+++||++|++||+ +.|+|||||++++||+
T Consensus 118 I~h~Vdv~sl~~~~~~~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~ 197 (282)
T KOG4174|consen 118 ILHGVDVTSLKFHADLRLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFN 197 (282)
T ss_pred eEecccceeEEecccccccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCc
Confidence 99999999999999999999999999999999533336666666 699999999999999999 8899999999999999
Q ss_pred cccHHHHHhhCCcEEEEEeeCCCCCCCCCccccCCCCCCCCCccCCC--cceEEEEecC
Q 016441 161 NWNIKELAIGSSLSLIWCSEFKIEDYPAYNNKRGDGPRCDEPFPLGE--CSTFIFGFLP 217 (389)
Q Consensus 161 sWnIe~LAa~aGL~L~~~~~F~~~~YPGY~hKRt~G~rsdk~F~~g~--a~TfvF~k~~ 217 (389)
.|||+.||++.||.|.+...|+++.||||+||||+|.+|+.|+.++. ++.|.|.+..
T Consensus 198 ~W~ik~Lak~~gl~L~~~skF~~~~~Pgy~~Kr~~gs~cd~p~l~~~~d~~~y~f~~~~ 256 (282)
T KOG4174|consen 198 PWNIKFLAKEFGLTLLEDSKFEKSNYPGYSNKRGDGSRCDSPLLVHERDAIEYHFLKFV 256 (282)
T ss_pred hhhhhHhhhhccccchhcccchhhcCCCcccccCCCcccCCccccccccceEEEEEeec
Confidence 99999999999999999999999999999999999999998877764 5677776654
No 3
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.86 E-value=3.4e-05 Score=70.36 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=97.7
Q ss_pred cccccCCC-CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCC
Q 016441 15 EKWIKHYS-SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTME 93 (389)
Q Consensus 15 ~K~~~~Ys-s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~ 93 (389)
.+|-+-|. ...+||=+|-|+=.|+.+||+.+. ..++++.-. ..++.++ +.+++....-.++.++ ..|+.++.
T Consensus 7 ~~~~~~f~~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~--~~~~l~~---a~~~~~~~~l~ni~~i-~~d~~~~~ 79 (194)
T TIGR00091 7 PDFATVFGNKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEI--HTPIVLA---ANNKANKLGLKNLHVL-CGDANELL 79 (194)
T ss_pred CCHHHHhCCCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEe--eHHHHHH---HHHHHHHhCCCCEEEE-ccCHHHHH
Confidence 34544554 456799999999999999998863 456665544 3444432 5555554322245544 44887653
Q ss_pred CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCc
Q 016441 94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSL 173 (389)
Q Consensus 94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL 173 (389)
.. .+....+|.|+.|||..-.+.+. .++|.+...|++.+..+|+++|.++++.... .|..|-++.+.+..++
T Consensus 80 ~~-~~~~~~~d~v~~~~pdpw~k~~h------~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~-~~~~~~~~~~~~~~~f 151 (194)
T TIGR00091 80 DK-FFPDGSLSKVFLNFPDPWPKKRH------NKRRITQPHFLKEYANVLKKGGVIHFKTDNE-PLFEDMLKVLSENDLF 151 (194)
T ss_pred Hh-hCCCCceeEEEEECCCcCCCCCc------cccccCCHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHHHHHHHhCCCe
Confidence 21 12335799999999865432111 1344556789999999999999999877444 4788888888887777
Q ss_pred EEEE
Q 016441 174 SLIW 177 (389)
Q Consensus 174 ~L~~ 177 (389)
....
T Consensus 152 ~~~~ 155 (194)
T TIGR00091 152 ENTS 155 (194)
T ss_pred Eecc
Confidence 7654
No 4
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=4.8e-06 Score=81.45 Aligned_cols=128 Identities=19% Similarity=0.109 Sum_probs=105.2
Q ss_pred hhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceEEEcCCCCC
Q 016441 35 FSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAG 114 (389)
Q Consensus 35 FSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G 114 (389)
|+|+++|-.......+++|||+.+..++.+. |.+.+|++-++..|..+.+.|+.++.+.-..+..+-|+-+.+=+||.|
T Consensus 1 ~g~~ar~ke~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g 79 (282)
T KOG4174|consen 1 FGFAARLKETLDLSTQLTATCLQRPAELARD-PLAWENLQNLRMDGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFG 79 (282)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcchhhhccC-hhhHHHHhhhhhccCceeeeeeccccccEEEecccchhhHHHHHHHhC
Confidence 6788888766655679999999988887664 778999999999999999999999999887777789999999999999
Q ss_pred CCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeCCCC
Q 016441 115 FYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKIE 184 (389)
Q Consensus 115 ~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F~~~ 184 (389)
. +++ .-.+..|...+| -|+..+|-..|||+.|++-.+.++.+.-++.-.
T Consensus 80 ~--sa~----ni~atSlDsk~~---------------dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~ 128 (282)
T KOG4174|consen 80 R--SAG----NITATSLDSKEF---------------DLKQKYPDAKENVEALKRLGGTILHGVDVTSLK 128 (282)
T ss_pred c--ccc----ceeeeeccchhh---------------hhhhcccchHHHHHHHHHcCCceEecccceeEE
Confidence 4 122 225666777776 567788889999999999999999887555433
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.41 E-value=0.00061 Score=60.94 Aligned_cols=114 Identities=24% Similarity=0.305 Sum_probs=74.2
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
...+||=+|=|.==.|.+|++.. ....|+|+-.+ ....+ -++.|++...-.++.|+. -|.-+ .+...+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~--~~a~~---~a~~n~~~n~~~~v~~~~-~d~~~-----~~~~~~ 98 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDIN--PDALE---LAKRNAERNGLENVEVVQ-SDLFE-----ALPDGK 98 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESB--HHHHH---HHHHHHHHTTCTTEEEEE-SSTTT-----TCCTTC
T ss_pred cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCC--HHHHH---HHHHHHHhcCcccccccc-ccccc-----cccccc
Confidence 67789999999998888888764 23356666444 33332 356777665544444442 23322 233689
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV 157 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 157 (389)
||.||+|-|...+ .+ ....++..|++.|..+|+++|++.+-.....
T Consensus 99 fD~Iv~NPP~~~~--~~-------~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 99 FDLIVSNPPFHAG--GD-------DGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp EEEEEE---SBTT--SH-------CHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred eeEEEEccchhcc--cc-------cchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 9999999995543 11 2456789999999999999999987665543
No 6
>PRK14968 putative methyltransferase; Provisional
Probab=97.37 E-value=0.012 Score=51.77 Aligned_cols=139 Identities=18% Similarity=0.231 Sum_probs=86.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH--hCCCEEEeccccCCCCCCCCcC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK--KLGTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr--~~Gv~VlfgVDATkL~~~~~Lk 99 (389)
.+..+||-+|=|+=.++..|++. +.+++|+-.+. ++.+ .++.|+.... ..++.++. .|+.+ .+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~--~~~~---~a~~~~~~~~~~~~~~~~~~-~d~~~-----~~~ 87 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINP--YAVE---CAKCNAKLNNIRNNGVEVIR-SDLFE-----PFR 87 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCH--HHHH---HHHHHHHHcCCCCcceEEEe-ccccc-----ccc
Confidence 56778999999999999999886 46787766552 2322 2455554322 22244443 34432 123
Q ss_pred CCCcceEEEcCCCCCCCCCccch-----HHH----HHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhh
Q 016441 100 TRKFDRIIFNFPHAGFYGKEDNH-----LLI----EMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIG 170 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gkED~~-----r~I----r~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~ 170 (389)
...||.|++|.|.... + .+.. ... ......+..|++.+..+|+++|.+.+...+.... =.+.++..+
T Consensus 88 ~~~~d~vi~n~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~--~~l~~~~~~ 163 (188)
T PRK14968 88 GDKFDVILFNPPYLPT-E-EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGE--DEVLEYLEK 163 (188)
T ss_pred ccCceEEEECCCcCCC-C-chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCH--HHHHHHHHH
Confidence 3489999999997652 1 1100 000 0125668899999999999999988877543211 135667778
Q ss_pred CCcEEEEE
Q 016441 171 SSLSLIWC 178 (389)
Q Consensus 171 aGL~L~~~ 178 (389)
+|+.....
T Consensus 164 ~g~~~~~~ 171 (188)
T PRK14968 164 LGFEAEVV 171 (188)
T ss_pred CCCeeeee
Confidence 89876643
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.19 E-value=0.013 Score=53.94 Aligned_cols=109 Identities=17% Similarity=0.323 Sum_probs=71.5
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
..++.+||=+|=|.=.++..|++..+....+++.-.. ++..+ .+++++....-..+.++.+ |+.++. +..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~~----~~~ 112 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFS--ENMLS---VGRQKVKDAGLHNVELVHG-NAMELP----FDD 112 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECC--HHHHH---HHHHHHHhcCCCceEEEEe-chhcCC----CCC
Confidence 3467899999999999999999987655566664443 33332 2556655433223444443 666543 334
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH 153 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL 153 (389)
..||.|+.++..--. ++ ...+++.+..+|+++|.+.+..
T Consensus 113 ~~fD~V~~~~~l~~~---~~-----------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 113 NSFDYVTIGFGLRNV---PD-----------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CCccEEEEecccccC---CC-----------HHHHHHHHHHHcCcCeEEEEEE
Confidence 689999998763221 11 2357788999999999997654
No 8
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.18 E-value=0.0023 Score=64.31 Aligned_cols=114 Identities=21% Similarity=0.340 Sum_probs=77.0
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcc
Q 016441 25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFD 104 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FD 104 (389)
.+||=+|=|.=.++..|++... ...|+++-.+ ....+ .++.|++.-. ..+.+ +..|+.. . + ..+||
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis--~~Al~---~A~~nl~~n~-l~~~~-~~~D~~~---~--~-~~~fD 263 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVS--AAALE---SSRATLAANG-LEGEV-FASNVFS---D--I-KGRFD 263 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHHcC-CCCEE-EEccccc---c--c-CCCcc
Confidence 4799999999999999998752 3455554443 33332 2556665421 22333 2335432 1 2 46799
Q ss_pred eEEEcCC-CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcc
Q 016441 105 RIIFNFP-HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW 162 (389)
Q Consensus 105 rIIFNFP-H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW 162 (389)
.||.|.| |.|. + .+......|++.|.++|+++|++.|....--||..|
T Consensus 264 lIvsNPPFH~g~---~-------~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~ 312 (342)
T PRK09489 264 MIISNPPFHDGI---Q-------TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDL 312 (342)
T ss_pred EEEECCCccCCc---c-------ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHH
Confidence 9999999 4553 1 234567899999999999999999988887888764
No 9
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.17 E-value=0.0006 Score=55.67 Aligned_cols=115 Identities=23% Similarity=0.211 Sum_probs=75.3
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcc
Q 016441 25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFD 104 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FD 104 (389)
.+||=+|=|.=+|+.++++.. ..++++.-.|....-. ++.|+....-..-.-++.-|++++.+ .+...+||
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~-----a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~~~~~D 72 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVEL-----ARRNLPRNGLDDRVEVIVGDARDLPE--PLPDGKFD 72 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHH-----HHHHCHHCTTTTTEEEEESHHHHHHH--TCTTT-EE
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHH-----HHHHHHHccCCceEEEEECchhhchh--hccCceeE
Confidence 467777778878888888764 5788888887543222 34455543322224566667777652 23568899
Q ss_pred eEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 105 RIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 105 rIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
.||+|-|....... ....+++...|++.|.++|+++|.+.+.+.
T Consensus 73 ~Iv~npP~~~~~~~------~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 73 LIVTNPPYGPRSGD------KAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EEEE--STTSBTT----------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCCCcccccc------chhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999999874221 223444888999999999999999988764
No 10
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.14 E-value=0.012 Score=54.55 Aligned_cols=129 Identities=19% Similarity=0.170 Sum_probs=91.4
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
+..+||=||=|.=.+|..+++... +.. .|+.|..+++.+ .++.|++.+.-.++.++. -|+.++.. ..+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~--V~giD~s~~~l~---~A~~~~~~~~l~~i~~~~-~d~~~~~~-----~~~ 112 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELK--VTLVDSLGKKIA---FLREVAAELGLKNVTVVH-GRAEEFGQ-----EEK 112 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCe--EEEEeCcHHHHH---HHHHHHHHcCCCCEEEEe-ccHhhCCC-----CCC
Confidence 478999999999999999987653 334 455576555544 256666665433455544 47776532 468
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeCC
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFK 182 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F~ 182 (389)
||.|+.|. .+ + +..|++.+.++|+++|.+.+-.... ..+.++++++..|+.+.+.....
T Consensus 113 fDlV~~~~--~~-----~-----------~~~~l~~~~~~LkpGG~lv~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 113 FDVVTSRA--VA-----S-----------LSDLVELCLPLLKPGGRFLALKGRD---PEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred ccEEEEcc--cc-----C-----------HHHHHHHHHHhcCCCeEEEEEeCCC---hHHHHHHHHHhcCceEeeeEEEe
Confidence 99999873 11 1 4579999999999999999886443 56778899999999999887665
Q ss_pred CC
Q 016441 183 IE 184 (389)
Q Consensus 183 ~~ 184 (389)
-+
T Consensus 172 ~~ 173 (187)
T PRK00107 172 LP 173 (187)
T ss_pred cC
Confidence 33
No 11
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.06 E-value=0.0066 Score=55.51 Aligned_cols=132 Identities=13% Similarity=0.066 Sum_probs=85.6
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
++.+||=||=|.=.+|..|+.... ...+ |..|...++.+. ++.|++.+.-.+++++. -|+.++. ....
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~-~~~V--~~iD~s~~~~~~---a~~~~~~~~~~~i~~i~-~d~~~~~-----~~~~ 109 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP-ELKL--TLLESNHKKVAF---LREVKAELGLNNVEIVN-GRAEDFQ-----HEEQ 109 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC-CCeE--EEEeCcHHHHHH---HHHHHHHhCCCCeEEEe-cchhhcc-----ccCC
Confidence 478999999888888888876542 3344 556655544432 45566555323455544 4777752 2468
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeCC
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFK 182 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F~ 182 (389)
||.|+.|. .+ + +..+++.+..+|+++|.+.+.+-....-.-+.+++.++..|+..+++-+|.
T Consensus 110 fD~I~s~~--~~-----~-----------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 110 FDVITSRA--LA-----S-----------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred ccEEEehh--hh-----C-----------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccC
Confidence 99999874 21 1 335777789999999999987633222234455555666899999987776
Q ss_pred CC
Q 016441 183 IE 184 (389)
Q Consensus 183 ~~ 184 (389)
-.
T Consensus 172 ~~ 173 (181)
T TIGR00138 172 GP 173 (181)
T ss_pred CC
Confidence 54
No 12
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.00 E-value=0.014 Score=53.81 Aligned_cols=140 Identities=16% Similarity=0.119 Sum_probs=86.0
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF 103 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F 103 (389)
..+||=+|=|.=.|+.++++.+. ...++ +.|......+ .++.|++...-..+.+ ..-|+.+. +...+|
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~-~~~v~--~iD~~~~~~~---~a~~~~~~~~~~~~~~-~~~d~~~~-----~~~~~f 155 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERP-DARVT--AVDISPEALA---VARKNAARLGLDNVTF-LQSDWFEP-----LPGGKF 155 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCC-CCEEE--EEECCHHHHH---HHHHHHHHcCCCeEEE-EECchhcc-----CcCCce
Confidence 34899999999999999998763 33555 4553333333 3666665432222333 33355431 234789
Q ss_pred ceEEEcCCCCCCCCCccchHHHHH------------hHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhC
Q 016441 104 DRIIFNFPHAGFYGKEDNHLLIEM------------HRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGS 171 (389)
Q Consensus 104 DrIIFNFPH~G~~gkED~~r~Ir~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~a 171 (389)
|.|+.|.|-............++. .-..+..|++.+..+|+++|.+.+..-. ...-.++++..++
T Consensus 156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---~~~~~~~~~l~~~ 232 (251)
T TIGR03534 156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---DQGEAVRALFEAA 232 (251)
T ss_pred eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---cHHHHHHHHHHhC
Confidence 999999998763111111111211 1234578999999999999999887532 2234677788888
Q ss_pred CcEEEEE
Q 016441 172 SLSLIWC 178 (389)
Q Consensus 172 GL~L~~~ 178 (389)
|+..+..
T Consensus 233 gf~~v~~ 239 (251)
T TIGR03534 233 GFADVET 239 (251)
T ss_pred CCCceEE
Confidence 9865543
No 13
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.95 E-value=0.015 Score=59.77 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=93.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.++++||=+|=|.=++|..+++..+....|+|.-.+ ++..+ .+++|++.+.-.++.+ ..-|++++... +. .
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~--~~~l~---~~~~n~~~~g~~~v~~-~~~D~~~~~~~--~~-~ 319 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIH--EHKLK---LIEENAKRLGLTNIET-KALDARKVHEK--FA-E 319 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHcCCCeEEE-EeCCcccccch--hc-c
Confidence 467899999999999999999887444456555443 33322 3566765543222333 44577776432 22 6
Q ss_pred CcceEEEcCCCCCCCCCcc---------chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhhC
Q 016441 102 KFDRIIFNFPHAGFYGKED---------NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIGS 171 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED---------~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~a 171 (389)
.||+|+.|-|..|. |.-. ....+..-..+-..++..|..+|++||.+..+.|+-.|- +...+....++.
T Consensus 320 ~fD~Vl~D~Pcsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 398 (444)
T PRK14902 320 KFDKILVDAPCSGL-GVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEH 398 (444)
T ss_pred cCCEEEEcCCCCCC-eeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhC
Confidence 79999999998874 3210 112233334556789999999999999999888876442 455666655543
Q ss_pred -CcEEEE
Q 016441 172 -SLSLIW 177 (389)
Q Consensus 172 -GL~L~~ 177 (389)
++.++.
T Consensus 399 ~~~~~~~ 405 (444)
T PRK14902 399 PEFELVP 405 (444)
T ss_pred CCcEEec
Confidence 455543
No 14
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.93 E-value=0.02 Score=56.66 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=86.2
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
..++++||=+|=|.=+|...++. . +..+++.-.| ..+.+ .++.|++...-.++. +..-|++++.. ..
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~-~--~~~v~g~Di~--~~~~~---~a~~nl~~~g~~~i~-~~~~D~~~l~~----~~ 246 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGL-M--GAKVIGCDID--WKMVA---GARINLEHYGIEDFF-VKRGDATKLPL----SS 246 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHH-h--CCeEEEEcCC--HHHHH---HHHHHHHHhCCCCCe-EEecchhcCCc----cc
Confidence 45677888755555555555443 2 3567765443 33333 367777654333333 45668888643 24
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEE
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWC 178 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~ 178 (389)
..||.||.|-|-....+... .....|...++..+.++|+++|.+.+.+.+.. .+.++++.+|+ +...
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~-----~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAG-----DGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----DLESLAEDAFR-VVKR 313 (329)
T ss_pred CCCCEEEECCCCcCcccccC-----CchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----CHHHHHhhcCc-chhe
Confidence 68999999988643211110 12346789999999999999999998876653 45688999999 6554
No 15
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.90 E-value=0.026 Score=58.06 Aligned_cols=148 Identities=18% Similarity=0.223 Sum_probs=97.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.++++||=+|=|-=.+|..|++..+....|+ +.|..+...+ .+++|++.+.-..+ ....-|++++.........
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~--a~D~~~~rl~---~~~~n~~r~g~~~v-~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIW--AVDRSASRLK---KLQENAQRLGLKSI-KILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEE--EEcCCHHHHH---HHHHHHHHcCCCeE-EEEeCChhhcccccccccc
Confidence 3467899999999999999988765433454 4564444333 36677665432233 3445788887543222346
Q ss_pred CcceEEEcCCCCCCCCC----cc-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhh-
Q 016441 102 KFDRIIFNFPHAGFYGK----ED-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIG- 170 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gk----ED-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~- 170 (389)
.||+|+.|=|..|. |. .+ ....+.....|-...+.+|..+|++||.+..+.|+-.|- +.-.|....++
T Consensus 325 ~fD~Vl~DaPCSg~-G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 325 YFDRILLDAPCSGL-GTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred cCCEEEEeCCCCcc-cccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 79999999999883 32 11 112344455667899999999999999999999987664 45666665444
Q ss_pred CCcEEE
Q 016441 171 SSLSLI 176 (389)
Q Consensus 171 aGL~L~ 176 (389)
.++.+.
T Consensus 404 ~~~~~~ 409 (434)
T PRK14901 404 PDWKLE 409 (434)
T ss_pred CCcEec
Confidence 466644
No 16
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.86 E-value=0.037 Score=52.55 Aligned_cols=139 Identities=13% Similarity=0.136 Sum_probs=83.8
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441 20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk 99 (389)
...++++||-||=|.=-.+..+++..+....|++.-.. ++..+ .+++|.+.+.-..++++. -|+..|. +.
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s--~~~l~---~A~~~~~~~g~~~v~~~~-~d~~~l~----~~ 143 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMT--PEMLA---KARANARKAGYTNVEFRL-GEIEALP----VA 143 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCC--HHHHH---HHHHHHHHcCCCCEEEEE-cchhhCC----CC
Confidence 45678899999999866666667766644467665443 33333 255665544322344333 3565543 33
Q ss_pred CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec--CCC------------------CC
Q 016441 100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK--TTV------------------PF 159 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk--~g~------------------PY 159 (389)
...||.|+.|.-..-. .+ ....|+.+..+|++||.+.++=. .+. .+
T Consensus 144 ~~~fD~Vi~~~v~~~~---~d-----------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (272)
T PRK11873 144 DNSVDVIISNCVINLS---PD-----------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGAL 209 (272)
T ss_pred CCceeEEEEcCcccCC---CC-----------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCC
Confidence 4689999988532111 11 13567888999999999998521 111 12
Q ss_pred CcccHHHHHhhCCcEEEEEeeCC
Q 016441 160 SNWNIKELAIGSSLSLIWCSEFK 182 (389)
Q Consensus 160 ~sWnIe~LAa~aGL~L~~~~~F~ 182 (389)
....+.++.+++|+..+......
T Consensus 210 ~~~e~~~~l~~aGf~~v~i~~~~ 232 (272)
T PRK11873 210 QEEEYLAMLAEAGFVDITIQPKR 232 (272)
T ss_pred CHHHHHHHHHHCCCCceEEEecc
Confidence 23356667778888877655443
No 17
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=96.83 E-value=0.039 Score=50.50 Aligned_cols=133 Identities=18% Similarity=0.157 Sum_probs=80.9
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcc
Q 016441 25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFD 104 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FD 104 (389)
++||=||-|.=.++..+++.++ ..++++..+ |.+.+. .+..+++...-.+-.-....|+.+.. + ...||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~-s~~~~~----~a~~~~~~~gl~~~i~~~~~d~~~~~----~-~~~fD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTI-SPEQAE----VGRERIRALGLQGRIRIFYRDSAKDP----F-PDTYD 69 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEEC-CHHHHH----HHHHHHHhcCCCcceEEEecccccCC----C-CCCCC
Confidence 3789999988888999998874 346666555 333221 24445433211111122335665431 1 24799
Q ss_pred eEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-------------CcccHHHHHh
Q 016441 105 RIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-------------SNWNIKELAI 169 (389)
Q Consensus 105 rIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-------------~sWnIe~LAa 169 (389)
.|+-+ +-|++. ...+|+++..+|+|+|.+.++-...... +.=.+.++.+
T Consensus 70 ~I~~~~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~ 133 (224)
T smart00828 70 LVFGFEVIHHIKD----------------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLA 133 (224)
T ss_pred EeehHHHHHhCCC----------------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHH
Confidence 99854 233321 3589999999999999998864311111 1113456788
Q ss_pred hCCcEEEEEeeCCCC
Q 016441 170 GSSLSLIWCSEFKIE 184 (389)
Q Consensus 170 ~aGL~L~~~~~F~~~ 184 (389)
++||.+.+...+...
T Consensus 134 ~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 134 RNNLRVVEGVDASLE 148 (224)
T ss_pred HCCCeEEEeEECcHh
Confidence 899999999888654
No 18
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.78 E-value=0.016 Score=63.40 Aligned_cols=160 Identities=16% Similarity=0.087 Sum_probs=98.7
Q ss_pred hhccccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccC
Q 016441 12 EKEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDAT 90 (389)
Q Consensus 12 ~~~~K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDAT 90 (389)
.+..+|+..+.++.+||=+|=|.=.||+++++. | +..| |+.|..+...+ -++.|++...-. .-.-+..-|+.
T Consensus 527 r~~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V--~~vD~s~~al~---~a~~N~~~ng~~~~~v~~i~~D~~ 599 (702)
T PRK11783 527 RPTRRMIGQMAKGKDFLNLFAYTGTASVHAALG-G-AKST--TTVDMSNTYLE---WAERNFALNGLSGRQHRLIQADCL 599 (702)
T ss_pred HHHHHHHHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEE--EEEeCCHHHHH---HHHHHHHHhCCCccceEEEEccHH
Confidence 345678888889999999999888899988874 3 3344 55664444443 367777553211 11123445654
Q ss_pred CCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhh
Q 016441 91 TMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIG 170 (389)
Q Consensus 91 kL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~ 170 (389)
+.-+. + ..+||.||.|-|-.+. ++.. ..+..-..-....+..|.++|+++|.+.++.+... +.. ..+.+.+
T Consensus 600 ~~l~~--~-~~~fDlIilDPP~f~~-~~~~--~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~--~~~~~~~ 670 (702)
T PRK11783 600 AWLKE--A-REQFDLIFIDPPTFSN-SKRM--EDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKM--DEEGLAK 670 (702)
T ss_pred HHHHH--c-CCCcCEEEECCCCCCC-CCcc--chhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CCh--hHHHHHh
Confidence 42111 1 4679999999998773 3220 01111122344567778999999999988776543 332 2667778
Q ss_pred CCcEEEEEe-eCCCCCCC
Q 016441 171 SSLSLIWCS-EFKIEDYP 187 (389)
Q Consensus 171 aGL~L~~~~-~F~~~~YP 187 (389)
+|+.+.... .-.+.|+|
T Consensus 671 ~g~~~~~i~~~~~~~Dhp 688 (702)
T PRK11783 671 LGLKAEEITAKTLPPDFA 688 (702)
T ss_pred CCCeEEEEecCCCCCCCC
Confidence 888777644 44566666
No 19
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.74 E-value=0.038 Score=56.75 Aligned_cols=145 Identities=18% Similarity=0.194 Sum_probs=95.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.++++||=+|=|-=.++..+++..+ +..|+ +.|......+ .+++|++.+. ..++ +...|++++... +...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~--a~D~s~~~l~---~~~~n~~~~g-~~~~-~~~~D~~~~~~~--~~~~ 312 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAP-QAQVV--ALDIDAQRLE---RVRENLQRLG-LKAT-VIVGDARDPAQW--WDGQ 312 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcC-CCEEE--EEeCCHHHHH---HHHHHHHHcC-CCeE-EEEcCcccchhh--cccC
Confidence 4678999999999999999988753 23454 4554343333 3566665532 1233 445688876432 2346
Q ss_pred CcceEEEcCCCCCCCCCc----c-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-CCcccHHHHHhh-
Q 016441 102 KFDRIIFNFPHAGFYGKE----D-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-FSNWNIKELAIG- 170 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkE----D-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sWnIe~LAa~- 170 (389)
.||+|+.|=|..|. |.- + ....+.....+...++..|..+|++||.+.++.|.-.| -+..+|....++
T Consensus 313 ~fD~Vl~D~Pcs~~-G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~ 391 (427)
T PRK10901 313 PFDRILLDAPCSAT-GVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARH 391 (427)
T ss_pred CCCEEEECCCCCcc-cccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 79999999998873 310 1 11234444567789999999999999999999986554 355677665544
Q ss_pred CCcEEEE
Q 016441 171 SSLSLIW 177 (389)
Q Consensus 171 aGL~L~~ 177 (389)
.++.+..
T Consensus 392 ~~~~~~~ 398 (427)
T PRK10901 392 PDAELLD 398 (427)
T ss_pred CCCEEec
Confidence 4676654
No 20
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.73 E-value=0.034 Score=52.32 Aligned_cols=142 Identities=15% Similarity=0.109 Sum_probs=87.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+..+||=+|-|.=.++.+|++... ...++++-.+ ....+ .++.|++......+.++. .|+.+. +...
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis--~~~l~---~a~~n~~~~~~~~i~~~~-~d~~~~-----~~~~ 174 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDIS--PEALA---VARRNAKHGLGARVEFLQ-GDWFEP-----LPGG 174 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECC--HHHHH---HHHHHHHhCCCCcEEEEE-ccccCc-----CCCC
Confidence 4566899999999999999998763 3456666443 33322 366777611122344433 355321 2246
Q ss_pred CcceEEEcCCCCCCCCCccchHHHH------------HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIE------------MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI 169 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir------------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa 169 (389)
+||.||.|.|-............++ ..-+++..|++.|..+|+++|.+.+.+-. ...-.+.++.+
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---~~~~~~~~~l~ 251 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---DQGEAVRALLA 251 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---hHHHHHHHHHH
Confidence 8999999999886411111111122 12356788999999999999999986522 12234777777
Q ss_pred hCCcEEEEE
Q 016441 170 GSSLSLIWC 178 (389)
Q Consensus 170 ~aGL~L~~~ 178 (389)
+.|+.-+..
T Consensus 252 ~~gf~~v~~ 260 (275)
T PRK09328 252 AAGFADVET 260 (275)
T ss_pred hCCCceeEE
Confidence 888864443
No 21
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.72 E-value=0.036 Score=53.36 Aligned_cols=143 Identities=14% Similarity=0.148 Sum_probs=96.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.++++||=+|=|-=.+|..||...+....|+ +.|......+ .+++|++.+.-..+ .+..-|++++... ..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~--a~D~~~~~l~---~~~~n~~~~g~~~v-~~~~~D~~~~~~~----~~ 139 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIV--ANEFSKSRTK---VLIANINRCGVLNV-AVTNFDGRVFGAA----VP 139 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEE--EEcCCHHHHH---HHHHHHHHcCCCcE-EEecCCHHHhhhh----cc
Confidence 4578899999999999999988775433454 4554443332 36777766532223 3455677765432 24
Q ss_pred CcceEEEcCCCCCCCCCc----c-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhh-
Q 016441 102 KFDRIIFNFPHAGFYGKE----D-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIG- 170 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkE----D-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~- 170 (389)
.||+|+.|=|..|. |.- + ..+.+.....+-...+.+|..+|+++|.+..+.|+-.|- +...|..+.++
T Consensus 140 ~fD~Vl~D~Pcsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 140 KFDAILLDAPCSGE-GVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR 218 (264)
T ss_pred CCCEEEEcCCCCCC-cccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence 59999999999984 311 0 223444555677889999999999999999999987664 56777776554
Q ss_pred CCcEE
Q 016441 171 SSLSL 175 (389)
Q Consensus 171 aGL~L 175 (389)
.++.+
T Consensus 219 ~~~~~ 223 (264)
T TIGR00446 219 PDVVE 223 (264)
T ss_pred CCcEE
Confidence 35543
No 22
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.72 E-value=0.0085 Score=61.42 Aligned_cols=135 Identities=13% Similarity=0.177 Sum_probs=87.3
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC---CEEEeccccCCCCCCCCcCC
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG---TCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G---v~VlfgVDATkL~~~~~Lk~ 100 (389)
..+||=+|=|+=-.+..|++.+. ...|+++-.+ +..+ + .++.|++.....+ +.++. -|+ -+ .+..
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S-~~Av-~---~A~~N~~~n~~~~~~~v~~~~-~D~---l~--~~~~ 296 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDES-PMAV-A---SSRLNVETNMPEALDRCEFMI-NNA---LS--GVEP 296 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC-CCEEEEEECC-HHHH-H---HHHHHHHHcCcccCceEEEEE-ccc---cc--cCCC
Confidence 35899999999999999988753 4456665433 3333 2 3667775443211 23322 122 11 1234
Q ss_pred CCcceEEEcCC-CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcc------cHHHHHhhCCc
Q 016441 101 RKFDRIIFNFP-HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW------NIKELAIGSSL 173 (389)
Q Consensus 101 ~~FDrIIFNFP-H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW------nIe~LAa~aGL 173 (389)
.+||.|+.|-| |.|. .. ...+...+|+.|..+|+++|++.|-.....+|..| +++.+|+..+|
T Consensus 297 ~~fDlIlsNPPfh~~~-~~---------~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~~~va~~~kf 366 (378)
T PRK15001 297 FRFNAVLCNPPFHQQH-AL---------TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKF 366 (378)
T ss_pred CCEEEEEECcCcccCc-cC---------CHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCceEEccCCCE
Confidence 57999999999 6663 11 22356789999999999999999987665666433 34556778888
Q ss_pred EEEEEee
Q 016441 174 SLIWCSE 180 (389)
Q Consensus 174 ~L~~~~~ 180 (389)
++.+.++
T Consensus 367 ~vl~a~k 373 (378)
T PRK15001 367 VVLKAVK 373 (378)
T ss_pred EEEEEEe
Confidence 8887765
No 23
>PRK14967 putative methyltransferase; Provisional
Probab=96.71 E-value=0.057 Score=50.21 Aligned_cols=141 Identities=14% Similarity=0.118 Sum_probs=85.6
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
..++.+||-+|=|.=.++..+++. + ...+++.-.+. +..+ -++.|++... ..+.++ .-|+.+. +..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~--~~l~---~a~~n~~~~~-~~~~~~-~~d~~~~-----~~~ 99 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISR--RAVR---SARLNALLAG-VDVDVR-RGDWARA-----VEF 99 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCH--HHHH---HHHHHHHHhC-CeeEEE-ECchhhh-----ccC
Confidence 345789999999998888888874 3 34676665543 2222 2556665432 223333 3455432 234
Q ss_pred CCcceEEEcCCCCCCCCCccchH-H-----H-HHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCc
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHL-L-----I-EMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSL 173 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r-~-----I-r~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL 173 (389)
..||.||.|-|...........+ . . .....++..|++.|..+|+++|.+.+.+.+-. +.-++.++.++.|+
T Consensus 100 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~~~~~~~l~~~g~ 177 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GVERTLTRLSEAGL 177 (223)
T ss_pred CCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CHHHHHHHHHHCCC
Confidence 68999999977654211000000 0 0 11345688999999999999999998766542 22356667777787
Q ss_pred EEEE
Q 016441 174 SLIW 177 (389)
Q Consensus 174 ~L~~ 177 (389)
.+..
T Consensus 178 ~~~~ 181 (223)
T PRK14967 178 DAEV 181 (223)
T ss_pred CeEE
Confidence 5444
No 24
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.70 E-value=0.045 Score=56.55 Aligned_cols=142 Identities=16% Similarity=0.201 Sum_probs=96.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeccccCCCCCCCCcC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC--ILHGVDATTMELHPDLR 99 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~--VlfgVDATkL~~~~~Lk 99 (389)
.++++||=+|-|-=.+|..|++..+....| |+.|..+...+ .+++|++.+ |+. ....-|+.++. .
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V--~avD~s~~~l~---~~~~~~~~~---g~~~v~~~~~Da~~~~-----~ 315 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQI--TAVDRYPQKLE---KIRSHASAL---GITIIETIEGDARSFS-----P 315 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEE--EEEECCHHHHH---HHHHHHHHh---CCCeEEEEeCcccccc-----c
Confidence 456889999999888999998876433344 45565554444 256666554 432 33456777653 2
Q ss_pred CCCcceEEEcCCCCCCCCC---c------cchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHh
Q 016441 100 TRKFDRIIFNFPHAGFYGK---E------DNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAI 169 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gk---E------D~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa 169 (389)
...||+|+.+=|..|. |. . .....+.....+-..++.+|..+|++||.+..+.|+-.|- +..+|....+
T Consensus 316 ~~~fD~Vl~D~Pcsg~-g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~ 394 (445)
T PRK14904 316 EEQPDAILLDAPCTGT-GVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQ 394 (445)
T ss_pred CCCCCEEEEcCCCCCc-chhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 3579999999999884 32 0 1123344445566789999999999999999999988764 5788877655
Q ss_pred hC-CcEEEE
Q 016441 170 GS-SLSLIW 177 (389)
Q Consensus 170 ~a-GL~L~~ 177 (389)
+. ++.+..
T Consensus 395 ~~~~~~~~~ 403 (445)
T PRK14904 395 RHPEFSAEP 403 (445)
T ss_pred hCCCCEEec
Confidence 44 565543
No 25
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.70 E-value=0.078 Score=47.38 Aligned_cols=138 Identities=16% Similarity=0.176 Sum_probs=85.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
+..+||=+|=|.=.++.++++.. + .+++.-++ .++.+ .++.|++... ..+.+ ...|+.+.. ...
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~--~-~v~~vD~s--~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~------~~~ 82 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG--K-CILTTDIN--PFAVK---ELRENAKLNN-VGLDV-VMTDLFKGV------RGK 82 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC--C-EEEEEECC--HHHHH---HHHHHHHHcC-CceEE-EEccccccc------CCc
Confidence 44689999999999999998753 2 56665444 33332 2566665322 22333 334554421 247
Q ss_pred cceEEEcCCCCCCCCCc--cchHHHH-----HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEE
Q 016441 103 FDRIIFNFPHAGFYGKE--DNHLLIE-----MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSL 175 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkE--D~~r~Ir-----~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L 175 (389)
||.|+.|-|+.-..... +....+. ....++..|++.+..+|+++|.+.+...... +.=.+.++.++.|+.+
T Consensus 83 fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~~ 160 (179)
T TIGR00537 83 FDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFRY 160 (179)
T ss_pred ccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCeE
Confidence 99999999986431110 1111111 2356789999999999999999887654322 1224566677778776
Q ss_pred EEE
Q 016441 176 IWC 178 (389)
Q Consensus 176 ~~~ 178 (389)
...
T Consensus 161 ~~~ 163 (179)
T TIGR00537 161 EIV 163 (179)
T ss_pred EEE
Confidence 653
No 26
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.61 E-value=0.048 Score=52.31 Aligned_cols=141 Identities=17% Similarity=0.094 Sum_probs=87.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
+...+||=+|=|.=.++++|++... +..++|.-.+ .+..+ .++.|++. .|++++ .-|+.+.-.. .+ ..
T Consensus 85 ~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis--~~al~---~A~~N~~~---~~~~~~-~~D~~~~l~~-~~-~~ 152 (251)
T TIGR03704 85 SGTLVVVDLCCGSGAVGAALAAALD-GIELHAADID--PAAVR---CARRNLAD---AGGTVH-EGDLYDALPT-AL-RG 152 (251)
T ss_pred CCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHH---cCCEEE-Eeechhhcch-hc-CC
Confidence 3345899999999889999987753 3467665433 33332 25667654 345553 3465442111 11 25
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHh------------HHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMH------------RSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI 169 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~n------------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa 169 (389)
+||.||+|-|-............++.+ .++++.++.+|..+|+++|.+.+.+-..+ .-.+.++.+
T Consensus 153 ~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~---~~~v~~~l~ 229 (251)
T TIGR03704 153 RVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ---APLAVEAFA 229 (251)
T ss_pred CEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch---HHHHHHHHH
Confidence 799999999988631110011112222 34578999999999999999998876543 336778888
Q ss_pred hCCcEEEE
Q 016441 170 GSSLSLIW 177 (389)
Q Consensus 170 ~aGL~L~~ 177 (389)
+.||...-
T Consensus 230 ~~g~~~~~ 237 (251)
T TIGR03704 230 RAGLIARV 237 (251)
T ss_pred HCCCCcee
Confidence 88875443
No 27
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.58 E-value=0.0079 Score=55.48 Aligned_cols=144 Identities=19% Similarity=0.225 Sum_probs=88.6
Q ss_pred ccccCCCC-CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEecccc-CCCC
Q 016441 16 KWIKHYSS-NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDA-TTME 93 (389)
Q Consensus 16 K~~~~Yss-~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDA-TkL~ 93 (389)
.|...|.. ..+||=+|=|.=.++..|++.+. ..+++|.-.+. +..+ .+.++++...-.++.++. -|+ ..+.
T Consensus 32 ~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~--~~i~---~a~~~~~~~~~~~v~~~~-~d~~~~l~ 104 (202)
T PRK00121 32 DWAELFGNDAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHE--PGVG---KALKKIEEEGLTNLRLLC-GDAVEVLL 104 (202)
T ss_pred CHHHHcCCCCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEech--HHHH---HHHHHHHHcCCCCEEEEe-cCHHHHHH
Confidence 55555555 55799999999999999988763 34676665553 2222 255555443222344433 466 5443
Q ss_pred CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCc
Q 016441 94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSL 173 (389)
Q Consensus 94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL 173 (389)
.. +....||.|+.|||....+...+ ..+.+...|++.+..+|+++|.+.++...-. + ...+.+...+.|+
T Consensus 105 ~~--~~~~~~D~V~~~~~~p~~~~~~~------~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~-~-~~~~~~~~~~~g~ 174 (202)
T PRK00121 105 DM--FPDGSLDRIYLNFPDPWPKKRHH------KRRLVQPEFLALYARKLKPGGEIHFATDWEG-Y-AEYMLEVLSAEGG 174 (202)
T ss_pred HH--cCccccceEEEECCCCCCCcccc------ccccCCHHHHHHHHHHcCCCCEEEEEcCCHH-H-HHHHHHHHHhCcc
Confidence 21 33467999999998543211111 1233467899999999999999998764321 2 2345666666777
Q ss_pred EEE
Q 016441 174 SLI 176 (389)
Q Consensus 174 ~L~ 176 (389)
...
T Consensus 175 ~~~ 177 (202)
T PRK00121 175 FLV 177 (202)
T ss_pred ccc
Confidence 554
No 28
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.56 E-value=0.034 Score=54.42 Aligned_cols=129 Identities=22% Similarity=0.319 Sum_probs=78.9
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC----CEEEeccccCCCCCCC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG----TCILHGVDATTMELHP 96 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G----v~VlfgVDATkL~~~~ 96 (389)
-.++++||=+|=|-=+++.-+|+.+| .+|++-++. .++.. .+++ .+++.| +.|.. .|..++..
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS-~~Q~~----~a~~---~~~~~gl~~~v~v~~-~D~~~~~~-- 126 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLS-EEQAE----YARE---RIREAGLEDRVEVRL-QDYRDLPG-- 126 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES--HHHHH----HHHH---HHHCSTSSSTEEEEE-S-GGG-----
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECC-HHHHH----HHHH---HHHhcCCCCceEEEE-eeccccCC--
Confidence 55789999999999999999999985 567776653 33221 1333 344455 44444 57665432
Q ss_pred CcCCCCcceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec---CCC--------------
Q 016441 97 DLRTRKFDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK---TTV-------------- 157 (389)
Q Consensus 97 ~Lk~~~FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk---~g~-------------- 157 (389)
+||+||-- |-|+|. ++ ...||+.+..+|+|||.+.|... +..
T Consensus 127 -----~fD~IvSi~~~Ehvg~---~~-----------~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~k 187 (273)
T PF02353_consen 127 -----KFDRIVSIEMFEHVGR---KN-----------YPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRK 187 (273)
T ss_dssp -----S-SEEEEESEGGGTCG---GG-----------HHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHH
T ss_pred -----CCCEEEEEechhhcCh---hH-----------HHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEE
Confidence 89999876 999984 21 55899999999999998865432 110
Q ss_pred ---C----CCcccHHHHHhhCCcEEEEEeeC
Q 016441 158 ---P----FSNWNIKELAIGSSLSLIWCSEF 181 (389)
Q Consensus 158 ---P----Y~sWnIe~LAa~aGL~L~~~~~F 181 (389)
| -+.-.|...++++||.+.....+
T Consensus 188 yiFPgg~lps~~~~~~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 188 YIFPGGYLPSLSEILRAAEDAGLEVEDVENL 218 (273)
T ss_dssp HTSTTS---BHHHHHHHHHHTT-EEEEEEE-
T ss_pred eeCCCCCCCCHHHHHHHHhcCCEEEEEEEEc
Confidence 1 12345566678889998877654
No 29
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.54 E-value=0.055 Score=52.85 Aligned_cols=135 Identities=20% Similarity=0.220 Sum_probs=82.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
+..+||=+|=|.=.++.+|++... ...++| .|-..+..+ -|+.|++...-. .+.++. -|+.+ .+...
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~-~~~v~a--vDis~~al~---~A~~n~~~~~~~~~i~~~~-~D~~~-----~~~~~ 188 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP-EAEVDA--VDISPDALA---VAEINIERHGLEDRVTLIQ-SDLFA-----ALPGR 188 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC-CCEEEE--EECCHHHHH---HHHHHHHHcCCCCcEEEEE-Cchhh-----ccCCC
Confidence 346899999999999999998753 345555 453333333 266676544211 133333 35532 12345
Q ss_pred CcceEEEcCCCCCCCCCccchHHHH-----------HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhh
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIE-----------MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIG 170 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir-----------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~ 170 (389)
+||.||.|=|-............++ .--++...+++.|.++|+++|.+.+.+-..+ . .+.++...
T Consensus 189 ~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~---~-~v~~~~~~ 264 (284)
T TIGR03533 189 KYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM---E-ALEEAYPD 264 (284)
T ss_pred CccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH---H-HHHHHHHh
Confidence 7999999998876311111111111 1124678899999999999999998775322 1 56666666
Q ss_pred CCc
Q 016441 171 SSL 173 (389)
Q Consensus 171 aGL 173 (389)
.|+
T Consensus 265 ~~~ 267 (284)
T TIGR03533 265 VPF 267 (284)
T ss_pred CCC
Confidence 664
No 30
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.53 E-value=0.064 Score=55.53 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=95.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeccccCCCCCCCCcC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC--ILHGVDATTMELHPDLR 99 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~--VlfgVDATkL~~~~~Lk 99 (389)
.++.+||=+|=|-=..|..++...+....|+|. |-.+...+ .+++|++.+ |+. .....|++++... .
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~--Dis~~rl~---~~~~n~~r~---g~~~v~~~~~Da~~l~~~---~ 304 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAV--DISREKIQ---LVEKHAKRL---KLSSIEIKIADAERLTEY---V 304 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEE--ECCHHHHH---HHHHHHHHc---CCCeEEEEECchhhhhhh---h
Confidence 456789888888778888888776544566665 43332222 366676544 432 3445688876432 2
Q ss_pred CCCcceEEEcCCCCCCCCCcc---------chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-CCcccHHHHHh
Q 016441 100 TRKFDRIIFNFPHAGFYGKED---------NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-FSNWNIKELAI 169 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gkED---------~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sWnIe~LAa 169 (389)
...||+|+.|=|..|. |.-. ....+.....+-...+.+|.++|++||.+..+.|+-.| -+..+|.+..+
T Consensus 305 ~~~fD~Vl~DaPCsg~-G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 305 QDTFDRILVDAPCTSL-GTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred hccCCEEEECCCCCCC-ccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 3579999999999885 4311 11233344456678899999999999999999998765 36778877544
Q ss_pred -hCCcEEEE
Q 016441 170 -GSSLSLIW 177 (389)
Q Consensus 170 -~aGL~L~~ 177 (389)
+.++.+..
T Consensus 384 ~~~~~~~~~ 392 (431)
T PRK14903 384 EQKDAEVID 392 (431)
T ss_pred hCCCcEEec
Confidence 55776654
No 31
>PRK01581 speE spermidine synthase; Validated
Probab=96.44 E-value=0.024 Score=58.39 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=89.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHH-HHHHHHHhCCCEEEeccccCC-CCCCCCc
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAK-SNLDNLKKLGTCILHGVDATT-MELHPDL 98 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~-~Ni~~Lr~~Gv~VlfgVDATk-L~~~~~L 98 (389)
.+..+||++|=|+-..++.+++. ....+|++--+|.+ -++.++|+.-. -|-..+....++|+++ ||.+ |..
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~-Da~~fL~~---- 222 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC-DAKEFLSS---- 222 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEEC-cHHHHHHh----
Confidence 34468999999998877777764 34568888888853 23333332210 1111223345555554 4544 222
Q ss_pred CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCc----ccHHHHHhhCCcE
Q 016441 99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSN----WNIKELAIGSSLS 174 (389)
Q Consensus 99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s----WnIe~LAa~aGL~ 174 (389)
...+||.||-++|..-... ..+..-..||+.|+..|+++|.+.+. .+.|... |.+.+.-+++++.
T Consensus 223 ~~~~YDVIIvDl~DP~~~~---------~~~LyT~EFy~~~~~~LkPgGV~V~Q--s~sp~~~~~~~~~i~~tL~~af~~ 291 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATEL---------LSTLYTSELFARIATFLTEDGAFVCQ--SNSPADAPLVYWSIGNTIEHAGLT 291 (374)
T ss_pred cCCCccEEEEcCCCccccc---------hhhhhHHHHHHHHHHhcCCCcEEEEe--cCChhhhHHHHHHHHHHHHHhCCc
Confidence 2357999999998743200 12333478999999999999987655 3345433 8888888888887
Q ss_pred EEEEeeC
Q 016441 175 LIWCSEF 181 (389)
Q Consensus 175 L~~~~~F 181 (389)
...-.-+
T Consensus 292 v~~y~t~ 298 (374)
T PRK01581 292 VKSYHTI 298 (374)
T ss_pred eEEEEEe
Confidence 7754444
No 32
>PRK03612 spermidine synthase; Provisional
Probab=96.42 E-value=0.025 Score=59.81 Aligned_cols=136 Identities=19% Similarity=0.254 Sum_probs=86.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhH-HHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRA-KSNLDNLKKLGTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A-~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk 99 (389)
.+.++||.+|=|+-..+..++++ +....+++--.|.+ -++.++++.. .-|-..+.+..++++.+ |+.+.-.. .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~-Da~~~l~~---~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVND-DAFNWLRK---L 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEC-hHHHHHHh---C
Confidence 34678999999999999998874 33357887777743 1222221100 00111233445777666 77763211 1
Q ss_pred CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC----CcccHHHHHhhCCc
Q 016441 100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF----SNWNIKELAIGSSL 173 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY----~sWnIe~LAa~aGL 173 (389)
..+||.||-|+|+....+ ..+-.-..||+.++++|+++|.+.+.. +.|+ .-|.+.+..++.|+
T Consensus 371 ~~~fDvIi~D~~~~~~~~---------~~~L~t~ef~~~~~~~L~pgG~lv~~~--~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPA---------LGKLYSVEFYRLLKRRLAPDGLLVVQS--TSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCCEEEEeCCCCCCcc---------hhccchHHHHHHHHHhcCCCeEEEEec--CCcccchHHHHHHHHHHHHcCC
Confidence 358999999999764211 122223679999999999999988765 3343 34888888888988
No 33
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.29 E-value=0.043 Score=49.51 Aligned_cols=118 Identities=16% Similarity=0.065 Sum_probs=76.8
Q ss_pred cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCC--
Q 016441 19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHP-- 96 (389)
Q Consensus 19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~-- 96 (389)
....++++||-+|=|.=.++..+++.......|+|.-.+.. . +..++.+ +..|+++.....
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~--~--------------~~~~i~~-~~~d~~~~~~~~~l 90 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM--K--------------PIENVDF-IRGDFTDEEVLNKI 90 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc--c--------------cCCCceE-EEeeCCChhHHHHH
Confidence 33467889999999999999999887654557888766532 1 1235553 344776532100
Q ss_pred --CcCCCCcceEEEcC-CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441 97 --DLRTRKFDRIIFNF-PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV 157 (389)
Q Consensus 97 --~Lk~~~FDrIIFNF-PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 157 (389)
.+....||.|+.|. ||..+ ..... .-...+++..++..+..+|+++|.+.+...+..
T Consensus 91 ~~~~~~~~~D~V~~~~~~~~~g--~~~~~--~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~ 150 (188)
T TIGR00438 91 RERVGDDKVDVVMSDAAPNISG--YWDID--HLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE 150 (188)
T ss_pred HHHhCCCCccEEEcCCCCCCCC--Ccccc--HHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc
Confidence 12346799999987 56432 11111 112345678899999999999999999765443
No 34
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.26 E-value=0.084 Score=42.57 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=70.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
++.+||=+|=|.=+++..|++.+. +..++|.-++ +++.+ .+++++.+.....-.-++.-|+ ..... ...+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~i~~~~~d~-~~~~~---~~~~ 70 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDIS--PEMLE---IARERAAEEGLSDRITFVQGDA-EFDPD---FLEP 70 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESS--HHHHH---HHHHHHHHTTTTTTEEEEESCC-HGGTT---TSSC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCC--HHHHH---HHHHHHHhcCCCCCeEEEECcc-ccCcc---cCCC
Confidence 468999999999999999999653 4567766554 33333 2566664422222222344566 11111 1356
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
||.|+.+. .+...- + +.+-...+++.+.++|+|+|.+.|+-+
T Consensus 71 ~D~v~~~~-~~~~~~-------~--~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 71 FDLVICSG-FTLHFL-------L--PLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EEEEEECS-GSGGGC-------C--HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCEEEECC-Cccccc-------c--chhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999998 432100 0 113456778899999999999999753
No 35
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.24 E-value=0.066 Score=40.01 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=65.6
Q ss_pred eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcce
Q 016441 26 QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDR 105 (389)
Q Consensus 26 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDr 105 (389)
+||-+|.|.-.++..+++ . ....+++...+... ... ++.+........+++ ...|+.+... .....||.
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~--~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVA--LEL---ARKAAAALLADNVEV-LKGDAEELPP---EADESFDV 69 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHH--HHH---HHHHHhcccccceEE-EEcChhhhcc---ccCCceEE
Confidence 578899999999998887 2 34577777665322 111 111111111122333 4456666443 23467999
Q ss_pred EEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 106 IIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 106 IIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
|+.|.|.-.. ......+++.+..+|+++|.+.++
T Consensus 70 i~~~~~~~~~-------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 70 IISDPPLHHL-------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEccceeeh-------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999986542 345668888889999999999887
No 36
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.22 E-value=0.16 Score=52.13 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=94.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE---eccccCCCCCCCCc
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL---HGVDATTMELHPDL 98 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl---fgVDATkL~~~~~L 98 (389)
.++++||=+|=|-=.+|..+++..+ ...|+|. |......+ .+++|++. .|+.+. ..-|+..+... .
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~--D~~~~~l~---~~~~n~~r---~g~~~~v~~~~~d~~~~~~~--~ 305 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP-QAQVVAL--DIHEHRLK---RVYENLKR---LGLTIKAETKDGDGRGPSQW--A 305 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEE--eCCHHHHH---HHHHHHHH---cCCCeEEEEecccccccccc--c
Confidence 4578999999999999999998765 3456655 54333332 25666654 455421 23344433221 2
Q ss_pred CCCCcceEEEcCCCCCCCCC----cc-----chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC-CCcccHHHHH
Q 016441 99 RTRKFDRIIFNFPHAGFYGK----ED-----NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP-FSNWNIKELA 168 (389)
Q Consensus 99 k~~~FDrIIFNFPH~G~~gk----ED-----~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sWnIe~LA 168 (389)
....||+|+-+=|..|. |. .+ ....+..-..|-..++.+|..+|++||.+.++.|+-.| -+.+.|..+-
T Consensus 306 ~~~~fD~VllDaPcSg~-G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l 384 (426)
T TIGR00563 306 ENEQFDRILLDAPCSAT-GVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFL 384 (426)
T ss_pred cccccCEEEEcCCCCCC-cccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHH
Confidence 34679999999999985 32 11 22344455567788999999999999999999998766 3677887755
Q ss_pred hhC-CcEE
Q 016441 169 IGS-SLSL 175 (389)
Q Consensus 169 a~a-GL~L 175 (389)
++. ++.+
T Consensus 385 ~~~~~~~~ 392 (426)
T TIGR00563 385 QEHPDFPF 392 (426)
T ss_pred HhCCCCee
Confidence 543 5543
No 37
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.10 E-value=0.054 Score=55.73 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=94.4
Q ss_pred hccccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh--CCCEEEeccccC
Q 016441 13 KEEKWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK--LGTCILHGVDAT 90 (389)
Q Consensus 13 ~~~K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~--~Gv~VlfgVDAT 90 (389)
+..+|+..+.++.+||=+|=|.=.|+++.+.. + +..|++ .|..+...+ -+++|++...- ..+.++ .-|+.
T Consensus 210 ~~R~~~~~~~~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~--VD~s~~al~---~a~~N~~~Ngl~~~~v~~i-~~D~~ 281 (396)
T PRK15128 210 DSRLATRRYVENKRVLNCFSYTGGFAVSALMG-G-CSQVVS--VDTSQEALD---IARQNVELNKLDLSKAEFV-RDDVF 281 (396)
T ss_pred HHHHHHHHhcCCCeEEEeccCCCHHHHHHHhC-C-CCEEEE--EECCHHHHH---HHHHHHHHcCCCCCcEEEE-EccHH
Confidence 34566777788899998888877777766542 2 345554 564444443 36777765431 123333 33665
Q ss_pred CCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCc----ccHHH
Q 016441 91 TMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSN----WNIKE 166 (389)
Q Consensus 91 kL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s----WnIe~ 166 (389)
+.-......+.+||.||.|=|-... +++ .+..-..-...++..|.++|+++|.+..+.|.+. .+. .-+.+
T Consensus 282 ~~l~~~~~~~~~fDlVilDPP~f~~-~k~----~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~-~~~~~f~~~v~~ 355 (396)
T PRK15128 282 KLLRTYRDRGEKFDVIVMDPPKFVE-NKS----QLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL-MTSDLFQKIIAD 355 (396)
T ss_pred HHHHHHHhcCCCCCEEEECCCCCCC-ChH----HHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc-CCHHHHHHHHHH
Confidence 4321111124679999999997542 222 1222222255667789999999999998888764 232 33444
Q ss_pred HHhhCC--cEEEEEeeCCCCCCC
Q 016441 167 LAIGSS--LSLIWCSEFKIEDYP 187 (389)
Q Consensus 167 LAa~aG--L~L~~~~~F~~~~YP 187 (389)
.|.++| +.+++. .-++.|+|
T Consensus 356 aa~~~~~~~~~l~~-~~~~~DhP 377 (396)
T PRK15128 356 AAIDAGRDVQFIEQ-FRQAADHP 377 (396)
T ss_pred HHHHcCCeEEEEEE-cCCCCCCC
Confidence 566665 444443 34666676
No 38
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.09 E-value=0.1 Score=54.68 Aligned_cols=144 Identities=17% Similarity=0.134 Sum_probs=88.8
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
..+..+||=+|=|.=.++.+|++... ..+++|+-.+ ++..+ .+++|++.+. ..+.++. -|..+.. . ...
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS--~~ALe---~AreNa~~~g-~rV~fi~-gDl~e~~--l-~~~ 317 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDIS--PPALE---TARKNAADLG-ARVEFAH-GSWFDTD--M-PSE 317 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHHcC-CcEEEEE-cchhccc--c-ccC
Confidence 44566899999999889999987753 4466665443 33333 3677876542 1233332 3443321 1 123
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHH-----------HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIE-----------MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI 169 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir-----------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa 169 (389)
.+||.||.|=|......++.....++ .-.+.++.++..+..+|+++|.+.+.+-.. ..-.++++.+
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~---Q~e~V~~ll~ 394 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD---QGAAVRGVLA 394 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc---HHHHHHHHHH
Confidence 47999999999987421111111111 112346788999999999999987766332 2337888888
Q ss_pred hCCcEEEEE
Q 016441 170 GSSLSLIWC 178 (389)
Q Consensus 170 ~aGL~L~~~ 178 (389)
+.|+..++.
T Consensus 395 ~~Gf~~v~v 403 (423)
T PRK14966 395 ENGFSGVET 403 (423)
T ss_pred HCCCcEEEE
Confidence 889876554
No 39
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.98 E-value=0.05 Score=50.79 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=84.1
Q ss_pred cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC---
Q 016441 19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH--- 95 (389)
Q Consensus 19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~--- 95 (389)
..+.++++||=+|=|.=+|+..|++..+....|+|.-++.. . ...++.++.+ |++.+...
T Consensus 47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~------------~~~~v~~i~~-D~~~~~~~~~i 109 (209)
T PRK11188 47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----D------------PIVGVDFLQG-DFRDELVLKAL 109 (209)
T ss_pred ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----c------------CCCCcEEEec-CCCChHHHHHH
Confidence 45677889999999999999999988765557888777551 0 1146777766 88875311
Q ss_pred -CCcCCCCcceEEEcC-CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441 96 -PDLRTRKFDRIIFNF-PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP 158 (389)
Q Consensus 96 -~~Lk~~~FDrIIFNF-PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P 158 (389)
..+....||.|+-|. ||..+ ... ..+..+-.++...++.|..+|++||.+.|.+..+..
T Consensus 110 ~~~~~~~~~D~V~S~~~~~~~g--~~~--~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 110 LERVGDSKVQVVMSDMAPNMSG--TPA--VDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred HHHhCCCCCCEEecCCCCccCC--ChH--HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 012357899999998 88853 211 112223345678999999999999999998888764
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.91 E-value=0.18 Score=40.87 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=67.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCC-CCCCCCcCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATT-MELHPDLRT 100 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATk-L~~~~~Lk~ 100 (389)
..+.+||=+|-|.=.++..|++..+ +..+++.-+. +...+ .++.|++.+.-..+.++ .-|+.. +... .
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~~-~~~~~~~~~~~----~ 86 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERN--PEALR---LIERNARRFGVSNIVIV-EGDAPEALEDS----L 86 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCC--HHHHH---HHHHHHHHhCCCceEEE-eccccccChhh----c
Confidence 3467999999999999999998764 3456555443 33332 25666666543334333 244443 2111 2
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
.+||.|+...+. . .+..+++.+.++|+++|.+.++.-
T Consensus 87 ~~~D~v~~~~~~------~-----------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 87 PEPDRVFIGGSG------G-----------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCCCEEEECCcc------h-----------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 479999985421 0 134889999999999999998753
No 41
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=95.85 E-value=0.16 Score=46.94 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=79.3
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
++.+||-||-|.=+++..|++. + .+++++-.+ ....+ .+..++.... ..+.+ ...|+..+... ....
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~iD~s--~~~~~---~a~~~~~~~~-~~~~~-~~~~~~~~~~~---~~~~ 114 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-G--ADVTGIDAS--EENIE---VARLHALESG-LKIDY-RQTTAEELAAE---HPGQ 114 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEcCC--HHHHH---HHHHHHHHcC-CceEE-EecCHHHhhhh---cCCC
Confidence 5678999999988888888774 2 456666443 22222 2444443221 12333 34555554321 2368
Q ss_pred cceEEEcC--CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC----------------------
Q 016441 103 FDRIIFNF--PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP---------------------- 158 (389)
Q Consensus 103 FDrIIFNF--PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P---------------------- 158 (389)
||.|+.++ .|.+. ...+++++..+|+++|.+.|+.....+
T Consensus 115 fD~Ii~~~~l~~~~~----------------~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (233)
T PRK05134 115 FDVVTCMEMLEHVPD----------------PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTH 178 (233)
T ss_pred ccEEEEhhHhhccCC----------------HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccC
Confidence 99999864 34331 235789999999999999988543211
Q ss_pred -----CCcccHHHHHhhCCcEEEEE
Q 016441 159 -----FSNWNIKELAIGSSLSLIWC 178 (389)
Q Consensus 159 -----Y~sWnIe~LAa~aGL~L~~~ 178 (389)
++..++.++.+++||.++..
T Consensus 179 ~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 179 DYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred chhhcCCHHHHHHHHHHCCCeEeee
Confidence 12345788899999988865
No 42
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.83 E-value=0.23 Score=45.00 Aligned_cols=107 Identities=18% Similarity=0.329 Sum_probs=65.3
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
...+||-||-|.=.++..+++..+....++++-.+ +.+.+ .+++++..............|+.++. +....
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s--~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 121 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFS--EGMLA---VGREKLRDLGLSGNVEFVQGDAEALP----FPDNS 121 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCC--HHHHH---HHHHhhcccccccCeEEEecccccCC----CCCCC
Confidence 46799999999999999999876422445554443 33332 24444432111122233446887754 23467
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
||.|+.++=.. ...+ +..+++++..+|+++|.|.+.
T Consensus 122 ~D~I~~~~~l~---~~~~-----------~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 122 FDAVTIAFGLR---NVPD-----------IDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred ccEEEEecccc---cCCC-----------HHHHHHHHHHhccCCcEEEEE
Confidence 99998764211 1111 346788999999999988663
No 43
>PRK04457 spermidine synthase; Provisional
Probab=95.77 E-value=0.022 Score=55.06 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=74.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeccccCCCCCCCCcCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-KLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
...+||.||=|.-++++.|++.++ ...|++--.|. ++.+ -|+++...-. ...++|+.+ ||.+.-.. ...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp--~vi~---~A~~~f~~~~~~~rv~v~~~-Da~~~l~~---~~~ 135 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINP--QVIA---VARNHFELPENGERFEVIEA-DGAEYIAV---HRH 135 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCH--HHHH---HHHHHcCCCCCCCceEEEEC-CHHHHHHh---CCC
Confidence 456899999999999999998763 45676666653 3332 1334432211 134667665 77653211 125
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP 158 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P 158 (389)
+||.|+.|.-+... .. .......||+.|..+|+++|.+.|.+....+
T Consensus 136 ~yD~I~~D~~~~~~--~~--------~~l~t~efl~~~~~~L~pgGvlvin~~~~~~ 182 (262)
T PRK04457 136 STDVILVDGFDGEG--II--------DALCTQPFFDDCRNALSSDGIFVVNLWSRDK 182 (262)
T ss_pred CCCEEEEeCCCCCC--Cc--------cccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence 79999998543221 10 0111469999999999999999998765443
No 44
>PRK08317 hypothetical protein; Provisional
Probab=95.77 E-value=0.34 Score=43.50 Aligned_cols=110 Identities=21% Similarity=0.184 Sum_probs=70.2
Q ss_pred cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEe-ccccCCCCCCCC
Q 016441 19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILH-GVDATTMELHPD 97 (389)
Q Consensus 19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vlf-gVDATkL~~~~~ 97 (389)
....++.+||-+|-|.=.++..+++.+++..+++++..+.. .+ + .+..+ ....+..+-+ ..|++.+.
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~-~~-~---~a~~~---~~~~~~~~~~~~~d~~~~~---- 82 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA-ML-A---LAKER---AAGLGPNVEFVRGDADGLP---- 82 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH-HH-H---HHHHH---hhCCCCceEEEecccccCC----
Confidence 34567889999999999999999988755567887777532 11 1 12222 1122333333 33666543
Q ss_pred cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
+....||.|+.+.-..-. .+ ...+++.+..+|+++|.|.+.-.
T Consensus 83 ~~~~~~D~v~~~~~~~~~---~~-----------~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHL---ED-----------PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCceEEEEechhhcc---CC-----------HHHHHHHHHHHhcCCcEEEEEec
Confidence 345789999987432211 11 24678889999999999987653
No 45
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.70 E-value=0.063 Score=51.77 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=69.1
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH----HhCCCEEEeccccCCCCCCCCcC
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL----KKLGTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L----r~~Gv~VlfgVDATkL~~~~~Lk 99 (389)
..+||.+|-|+-+++..+++.. +..++++...|.. +.+ .+++++..+ ....+++.. -|+.+.-.. .
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~--vi~---~a~~~~~~~~~~~~~~~v~i~~-~D~~~~l~~---~ 142 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEK--VIE---LSKKFLPSLAGSYDDPRVDLQI-DDGFKFLAD---T 142 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHH--HHH---HHHHHhHhhcccccCCceEEEE-CchHHHHHh---C
Confidence 4599999999999999998754 3457888877743 221 133343333 223355544 455332111 1
Q ss_pred CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
..+||.||.+.|..-. .. ..-....||+.++.+|+++|.+.+.
T Consensus 143 ~~~yDvIi~D~~~~~~--~~--------~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVG--PA--------ETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCccEEEEeCCCCCC--cc--------cchhHHHHHHHHHHHhCCCcEEEEc
Confidence 3689999999875421 10 1122479999999999999998876
No 46
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.64 E-value=0.53 Score=45.25 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=69.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC---CCEEEeccccCCCCCCCCc
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL---GTCILHGVDATTMELHPDL 98 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~---Gv~VlfgVDATkL~~~~~L 98 (389)
.+..+||=||=|.=.++..|++..+...+|+| .|-.+++.+. |+++....... ++. +..-|+.+|. +
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~g--vD~S~~ml~~---A~~r~~~~~~~~~~~i~-~~~~d~~~lp----~ 141 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMG--LDFSSEQLAV---AASRQELKAKSCYKNIE-WIEGDATDLP----F 141 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEE--EECCHHHHHH---HHHHhhhhhhccCCCeE-EEEcccccCC----C
Confidence 45789999999988899999887654345655 4533444432 33332211111 233 3345777653 4
Q ss_pred CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
....||.|+.+|=.--. +| ...+++.+..+|+|||.+.++-.
T Consensus 142 ~~~sfD~V~~~~~l~~~---~d-----------~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 142 DDCYFDAITMGYGLRNV---VD-----------RLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCCEeEEEEecccccC---CC-----------HHHHHHHHHHHcCcCcEEEEEEC
Confidence 55789999988643221 11 34788999999999999887643
No 47
>PLN02244 tocopherol O-methyltransferase
Probab=95.59 E-value=0.46 Score=47.48 Aligned_cols=138 Identities=22% Similarity=0.250 Sum_probs=85.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EEE-eccccCCCCCCCCc
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT--CIL-HGVDATTMELHPDL 98 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv--~Vl-fgVDATkL~~~~~L 98 (389)
.+..+||=||=|.=.++..|++.++ .++++.-++ .+.+ + .+..+.+ +.|. .|- ..-|+..+. +
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s-~~~i-~---~a~~~~~---~~g~~~~v~~~~~D~~~~~----~ 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLS-PVQA-A---RANALAA---AQGLSDKVSFQVADALNQP----F 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECC-HHHH-H---HHHHHHH---hcCCCCceEEEEcCcccCC----C
Confidence 4677999999999999999998873 467665443 2222 2 1333332 2232 222 334777653 3
Q ss_pred CCCCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec-C--CCC----C----------
Q 016441 99 RTRKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK-T--TVP----F---------- 159 (389)
Q Consensus 99 k~~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk-~--g~P----Y---------- 159 (389)
....||.|+.++- |.. | ...+|+.+..+|+|||.+.|+-. . ..| .
T Consensus 183 ~~~~FD~V~s~~~~~h~~-----d-----------~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (340)
T PLN02244 183 EDGQFDLVWSMESGEHMP-----D-----------KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDK 246 (340)
T ss_pred CCCCccEEEECCchhccC-----C-----------HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHH
Confidence 4578999997643 432 1 23788899999999999988532 1 111 0
Q ss_pred -------Ccc----cHHHHHhhCCcEEEEEeeCCCCCCCCC
Q 016441 160 -------SNW----NIKELAIGSSLSLIWCSEFKIEDYPAY 189 (389)
Q Consensus 160 -------~sW----nIe~LAa~aGL~L~~~~~F~~~~YPGY 189 (389)
..| +++++++++||..++...+....-|-|
T Consensus 247 i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~ 287 (340)
T PLN02244 247 ICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFW 287 (340)
T ss_pred HHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHH
Confidence 112 455678899999888776554433433
No 48
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=95.58 E-value=0.094 Score=54.33 Aligned_cols=133 Identities=15% Similarity=0.218 Sum_probs=90.5
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF 103 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F 103 (389)
...+|=||=|+=-|++.||+.+ ...+++|.-.+.. +.+ .+..++....-.++.++ ..||..+-.. +....+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~--~i~---~a~~ka~~~gL~NV~~i-~~DA~~ll~~--~~~~s~ 193 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTP--SIE---QVLKQIELLNLKNLLII-NYDARLLLEL--LPSNSV 193 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHH--HHH---HHHHHHHHcCCCcEEEE-ECCHHHhhhh--CCCCce
Confidence 4579999999999999999887 3568888766532 222 13334333221234544 5788776433 456889
Q ss_pred ceEEEcCCCCCCCCCccchHHHHHh-HHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEE
Q 016441 104 DRIIFNFPHAGFYGKEDNHLLIEMH-RSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSL 175 (389)
Q Consensus 104 DrIIFNFPH~G~~gkED~~r~Ir~n-r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L 175 (389)
|+|+.|||-.-.+. .| |.....|+..+..+|++||.|++....- +|-.|-++.+.+...+.+
T Consensus 194 D~I~lnFPdPW~Kk---------rHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~-~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 194 EKIFVHFPVPWDKK---------PHRRVISEDFLNEALRVLKPGGTLELRTDSE-LYFEFSLELFLKLPKAKI 256 (390)
T ss_pred eEEEEeCCCCcccc---------chhhccHHHHHHHHHHHcCCCcEEEEEEECH-HHHHHHHHHHHhCCCcee
Confidence 99999998543211 22 3346789999999999999999987665 488888888766655544
No 49
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.57 E-value=0.25 Score=48.95 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=82.0
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCCCCc
Q 016441 25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRTRKF 103 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~~~F 103 (389)
.+||=+|-|.=.++.+|++.+. ...++|+ |-..+..+ .|+.|++.+.-. .+.++. -|+.+ .+...+|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~av--Dis~~al~---~A~~n~~~~~l~~~i~~~~-~D~~~-----~l~~~~f 202 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAV--DISPDALA---VAEINIERHGLEDRVTLIE-SDLFA-----ALPGRRY 202 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEE--eCCHHHHH---HHHHHHHHhCCCCcEEEEE-Cchhh-----hCCCCCc
Confidence 5899999999999999998763 3456555 53233332 367777655321 144443 35432 1223579
Q ss_pred ceEEEcCCCCCCCCCccchHHHH-----------HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCC
Q 016441 104 DRIIFNFPHAGFYGKEDNHLLIE-----------MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSS 172 (389)
Q Consensus 104 DrIIFNFPH~G~~gkED~~r~Ir-----------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aG 172 (389)
|.||.|=|-++..........++ .--++...+++.|..+|++||.+.+.+-..+ . .+.++....+
T Consensus 203 DlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~---~-~~~~~~~~~~ 278 (307)
T PRK11805 203 DLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR---V-HLEEAYPDVP 278 (307)
T ss_pred cEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH---H-HHHHHHhhCC
Confidence 99999988877421111011111 0125678899999999999999998765432 1 2555555555
Q ss_pred cEE
Q 016441 173 LSL 175 (389)
Q Consensus 173 L~L 175 (389)
+..
T Consensus 279 ~~~ 281 (307)
T PRK11805 279 FTW 281 (307)
T ss_pred CEE
Confidence 544
No 50
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.53 E-value=0.016 Score=53.85 Aligned_cols=150 Identities=19% Similarity=0.279 Sum_probs=95.6
Q ss_pred hccccccCCCCCCe-EEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCC
Q 016441 13 KEEKWIKHYSSNHQ-ILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATT 91 (389)
Q Consensus 13 ~~~K~~~~Yss~~r-ILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATk 91 (389)
....|-..|..... +|=||=|+=-|..++|+.+ ...|+++--.. .....+ +...++...-.++.++. .||..
T Consensus 6 ~~~~~~~~f~~~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~--~~~v~~---a~~~~~~~~l~Nv~~~~-~da~~ 78 (195)
T PF02390_consen 6 EPLDWQEIFGNDNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIR--KKRVAK---ALRKAEKRGLKNVRFLR-GDARE 78 (195)
T ss_dssp CTTCHHHHHTSCCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES---HHHHHH---HHHHHHHHTTSSEEEEE-S-CTT
T ss_pred CccCHHHHcCCCCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecc--hHHHHH---HHHHHHhhcccceEEEE-ccHHH
Confidence 44567777777764 7778888888888998887 46788886443 222222 34444444434556654 48888
Q ss_pred CCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh-h
Q 016441 92 MELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI-G 170 (389)
Q Consensus 92 L~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa-~ 170 (389)
+-.. .+....+|.|..|||-.=.+-+. .++|-+=..|+.....+|++||+|++..... +|-.|-++.+.+ .
T Consensus 79 ~l~~-~~~~~~v~~i~i~FPDPWpK~rH------~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~-~y~~~~~~~~~~~~ 150 (195)
T PF02390_consen 79 LLRR-LFPPGSVDRIYINFPDPWPKKRH------HKRRLVNPEFLELLARVLKPGGELYFATDVE-EYAEWMLEQFEESH 150 (195)
T ss_dssp HHHH-HSTTTSEEEEEEES-----SGGG------GGGSTTSHHHHHHHHHHEEEEEEEEEEES-H-HHHHHHHHHHHHHS
T ss_pred HHhh-cccCCchheEEEeCCCCCcccch------hhhhcCCchHHHHHHHHcCCCCEEEEEeCCH-HHHHHHHHHHHhcC
Confidence 3222 13457899999999998653221 1334445688888999999999998776544 599999999999 5
Q ss_pred CCcEEEE
Q 016441 171 SSLSLIW 177 (389)
Q Consensus 171 aGL~L~~ 177 (389)
.++....
T Consensus 151 ~~f~~~~ 157 (195)
T PF02390_consen 151 PGFENIE 157 (195)
T ss_dssp TTEEEE-
T ss_pred cCeEEcc
Confidence 7888774
No 51
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.52 E-value=0.14 Score=54.28 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=85.9
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCCCC
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
..+||=+|=|.=.++.+|++.+. ...++|+-.+ .+.+ + -|+.|++...-. .+.+ ...|+.. .+...+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis-~~al-~---~A~~N~~~~~l~~~v~~-~~~D~~~-----~~~~~~ 206 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDIS-LDAI-E---VAKSNAIKYEVTDRIQI-IHSNWFE-----NIEKQK 206 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECC-HHHH-H---HHHHHHHHcCCccceee-eecchhh-----hCcCCC
Confidence 46899999999899999988763 3466665443 3333 2 366776543211 1332 3334322 122457
Q ss_pred cceEEEcCCCCCCCCCccchHHHHH------------hHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhh
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEM------------HRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIG 170 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~ 170 (389)
||.||.|=|.+...-.......+.. =.+.++.++..|..+|+++|.+.+.+-.. ....|.++.++
T Consensus 207 fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~---q~~~v~~~~~~ 283 (506)
T PRK01544 207 FDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK---QEEAVTQIFLD 283 (506)
T ss_pred ccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc---hHHHHHHHHHh
Confidence 9999999999874111110111111 12456778899999999999998875433 34567778888
Q ss_pred CCcEEEEE
Q 016441 171 SSLSLIWC 178 (389)
Q Consensus 171 aGL~L~~~ 178 (389)
.|+..+..
T Consensus 284 ~g~~~~~~ 291 (506)
T PRK01544 284 HGYNIESV 291 (506)
T ss_pred cCCCceEE
Confidence 88865544
No 52
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=95.49 E-value=0.22 Score=44.86 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=81.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+..+||=||=|.=+++..+++... ...++ +.|...+..+ .+++|++.+.-..++++.+ |+.. .+ ..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~--~vD~s~~~~~---~a~~n~~~~~~~~i~~~~~-d~~~-----~~-~~ 96 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFP-SLQVT--AIERNPDALR---LIKENRQRFGCGNIDIIPG-EAPI-----EL-PG 96 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCC-CCEEE--EEECCHHHHH---HHHHHHHHhCCCCeEEEec-Cchh-----hc-Cc
Confidence 4677999999999999999998752 33444 4554333333 3667776654334666543 4421 12 24
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeC
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEF 181 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F 181 (389)
.||.|+.+... + .+..++..+..+|+++|.+.+....-. +.=++.++.++.|+...+....
T Consensus 97 ~~D~v~~~~~~----~-------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~--~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 97 KADAIFIGGSG----G-------------NLTAIIDWSLAHLHPGGRLVLTFILLE--NLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred CCCEEEECCCc----c-------------CHHHHHHHHHHhcCCCeEEEEEEecHh--hHHHHHHHHHHCCCCcceEEEE
Confidence 79999987431 0 134678889999999999987543211 1125666888888876665443
No 53
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.45 E-value=0.091 Score=45.54 Aligned_cols=111 Identities=25% Similarity=0.285 Sum_probs=75.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
+++.+||=+|=|.=-++..|++..+++.+ .+..|-.+++.++ |+.+++.+.-..+ -.+-.|++++... +. .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~--i~gvD~s~~~i~~---a~~~~~~~~~~ni-~~~~~d~~~l~~~--~~-~ 72 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAK--IIGVDISEEMIEY---AKKRAKELGLDNI-EFIQGDIEDLPQE--LE-E 72 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSE--EEEEESSHHHHHH---HHHHHHHTTSTTE-EEEESBTTCGCGC--SS-T
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCE--EEEEECcHHHHHH---hhccccccccccc-ceEEeehhccccc--cC-C
Confidence 46789999999999999999976554455 5566755566553 4555444433323 3444788886654 33 7
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT 155 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 155 (389)
.||.|+.+.+---. .+ ...+++.+..+|+++|.+.++...
T Consensus 73 ~~D~I~~~~~l~~~---~~-----------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNGVLHHF---PD-----------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TEEEEEEESTGGGT---SH-----------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEEcCchhhc---cC-----------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 89999999654211 11 236688999999999999988776
No 54
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=95.44 E-value=0.37 Score=43.21 Aligned_cols=104 Identities=17% Similarity=0.316 Sum_probs=66.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
+..+||=+|-|.=.++..+++..+....+++.-.+ +++.+ .+.+++. ....+.++ ..|+.++. +....
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~--~~~~~---~~~~~~~--~~~~i~~~-~~d~~~~~----~~~~~ 106 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS--SEMLE---VAKKKSE--LPLNIEFI-QADAEALP----FEDNS 106 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECC--HHHHH---HHHHHhc--cCCCceEE-ecchhcCC----CCCCc
Confidence 57799999999999999999886422345554443 33322 2334443 11234443 47777654 23467
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
||.|+.++--... .+ ...+++++..+|+++|.+.+.
T Consensus 107 ~D~i~~~~~~~~~---~~-----------~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 107 FDAVTIAFGLRNV---TD-----------IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred EEEEEEeeeeCCc---cc-----------HHHHHHHHHHHcCCCcEEEEE
Confidence 9999987642211 11 346899999999999988764
No 55
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.41 E-value=0.25 Score=45.69 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=68.4
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.++++||=+|=|.=.++..|++..+....++|.-.+ +++.+ .|++|++.+.-.+++++. .|+..... ...
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~--~~~~~---~A~~~~~~~g~~~v~~~~-~d~~~~~~----~~~ 145 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERI--PELAE---KAERRLRKLGLDNVIVIV-GDGTQGWE----PLA 145 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHCCCCCeEEEE-CCcccCCc----ccC
Confidence 567899999999999999999886543346655444 44443 367777765433466554 36654321 125
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT 155 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 155 (389)
.||+|+.+.+-... .......|+++|.+.+.+.+
T Consensus 146 ~fD~Ii~~~~~~~~--------------------~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------------------PEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCCEEEEcCCcccc--------------------cHHHHHhcCcCcEEEEEEcC
Confidence 89999998653221 12245679999999987654
No 56
>PRK04266 fibrillarin; Provisional
Probab=95.31 E-value=0.52 Score=44.96 Aligned_cols=136 Identities=12% Similarity=0.113 Sum_probs=82.2
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441 20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk 99 (389)
...++.+||=+|=|.=.++..|++..+ ...|+| +|..+++.+. ..++.+. ..++.++. -|++.......+.
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~a--vD~~~~ml~~---l~~~a~~--~~nv~~i~-~D~~~~~~~~~l~ 139 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYA--VEFAPRPMRE---LLEVAEE--RKNIIPIL-ADARKPERYAHVV 139 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEE--EECCHHHHHH---HHHHhhh--cCCcEEEE-CCCCCcchhhhcc
Confidence 345778999999998889999998775 234544 4655544432 2222222 13555543 3666432112233
Q ss_pred CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC------CCCCcc--cHHHHHhhC
Q 016441 100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT------VPFSNW--NIKELAIGS 171 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g------~PY~sW--nIe~LAa~a 171 (389)
..||.|+-+.+.. + -...+++.+..+|+|||.+.|++.-. .| ..| +..+..+.+
T Consensus 140 -~~~D~i~~d~~~p------~----------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~-~~~~~~~~~~l~~a 201 (226)
T PRK04266 140 -EKVDVIYQDVAQP------N----------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP-KEIFKEEIRKLEEG 201 (226)
T ss_pred -ccCCEEEECCCCh------h----------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH-HHHHHHHHHHHHHc
Confidence 4599998554421 0 01346778889999999999985532 11 111 133677788
Q ss_pred CcEEEEEeeCC
Q 016441 172 SLSLIWCSEFK 182 (389)
Q Consensus 172 GL~L~~~~~F~ 182 (389)
||..++...+.
T Consensus 202 GF~~i~~~~l~ 212 (226)
T PRK04266 202 GFEILEVVDLE 212 (226)
T ss_pred CCeEEEEEcCC
Confidence 99999887653
No 57
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.20 E-value=0.35 Score=44.16 Aligned_cols=133 Identities=18% Similarity=0.261 Sum_probs=82.3
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeccccCCCCCCCCcC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-KLGTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-~~Gv~VlfgVDATkL~~~~~Lk 99 (389)
..++.+||-+|=|.=++|..+++..+....|+|. |...+..+ .+++|++.+. ...+.+. .-|+.++-.. +
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~av--D~~~~~~~---~a~~n~~~~g~~~~v~~~-~~d~~~~l~~--~- 108 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAV--DKDEKAIN---LTRRNAEKFGVLNNIVLI-KGEAPEILFT--I- 108 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEE--ECCHHHHH---HHHHHHHHhCCCCCeEEE-EechhhhHhh--c-
Confidence 4467799999999999999998876544455554 54333433 3677877665 3345554 3466542111 1
Q ss_pred CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441 100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS 179 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~ 179 (389)
...||+|+-+. + .++ +..+++.+..+|+++|.|.+...+-. +.=.+....++.|+......
T Consensus 109 ~~~~D~V~~~~---~---~~~-----------~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 109 NEKFDRIFIGG---G---SEK-----------LKEIISASWEIIKKGGRIVIDAILLE--TVNNALSALENIGFNLEITE 169 (198)
T ss_pred CCCCCEEEECC---C---ccc-----------HHHHHHHHHHHcCCCcEEEEEeecHH--HHHHHHHHHHHcCCCeEEEE
Confidence 25799999864 1 111 35688899999999999987554321 11134445567887544333
Q ss_pred eC
Q 016441 180 EF 181 (389)
Q Consensus 180 ~F 181 (389)
.+
T Consensus 170 ~~ 171 (198)
T PRK00377 170 VI 171 (198)
T ss_pred Ee
Confidence 33
No 58
>PRK00811 spermidine synthase; Provisional
Probab=95.19 E-value=0.19 Score=49.15 Aligned_cols=109 Identities=17% Similarity=0.268 Sum_probs=70.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-----HhCCCEEEeccccCCCCCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-----KKLGTCILHGVDATTMELHPD 97 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-----r~~Gv~VlfgVDATkL~~~~~ 97 (389)
...+||.+|=|+-+.+..++++. ...+|++--+|. ++.+. +++++..+ +...++|+ --||.+.-..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~--~vv~~---a~~~~~~~~~~~~~d~rv~v~-~~Da~~~l~~-- 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDE--RVVEV---CRKYLPEIAGGAYDDPRVELV-IGDGIKFVAE-- 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCH--HHHHH---HHHHhHHhccccccCCceEEE-ECchHHHHhh--
Confidence 45789999999999999998753 345677777774 33322 44455443 23345554 4466553221
Q ss_pred cCCCCcceEEEcCCC-CCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 98 LRTRKFDRIIFNFPH-AGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 98 Lk~~~FDrIIFNFPH-~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
...+||.||-+.+. .+. . ..-.-..||+.|+++|+++|.+.+.
T Consensus 147 -~~~~yDvIi~D~~dp~~~-~----------~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 147 -TENSFDVIIVDSTDPVGP-A----------EGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred -CCCcccEEEECCCCCCCc-h----------hhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 24689999999643 231 1 1113478999999999999977653
No 59
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.14 E-value=0.34 Score=45.91 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=67.4
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--E-EEeccccCCCCCCCCc
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT--C-ILHGVDATTMELHPDL 98 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv--~-VlfgVDATkL~~~~~L 98 (389)
....+||=||=|.=.+|..|++. +.++++. |..+++.+. |+++++. .|. . -+...|+..+.. .
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~v--D~s~~~l~~---a~~~~~~---~g~~~~v~~~~~d~~~l~~---~ 108 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILC--DLSAEMIQR---AKQAAEA---KGVSDNMQFIHCAAQDIAQ---H 108 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEE--ECCHHHHHH---HHHHHHh---cCCccceEEEEcCHHHHhh---h
Confidence 45679999999999999999975 3466654 644444442 4444433 332 1 233456666532 2
Q ss_pred CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441 99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT 155 (389)
Q Consensus 99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 155 (389)
....||.|+++...--. ++ ...++..+..+|+|||.+.|+..+
T Consensus 109 ~~~~fD~V~~~~vl~~~---~~-----------~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 109 LETPVDLILFHAVLEWV---AD-----------PKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred cCCCCCEEEehhHHHhh---CC-----------HHHHHHHHHHHcCCCeEEEEEEEC
Confidence 24679999987552211 11 125788899999999999887543
No 60
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.04 E-value=1.5 Score=40.26 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=64.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+..+||=+|-|.=.+|..||+. +.+|+| .|...++.++ ++.++..-.-.++.+ ...|+..+. + ..
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~---g~~V~g--vD~S~~~i~~---a~~~~~~~~~~~v~~-~~~d~~~~~----~-~~ 94 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN---GFDVTA--WDKNPMSIAN---LERIKAAENLDNLHT-AVVDLNNLT----F-DG 94 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC---CCEEEE--EeCCHHHHHH---HHHHHHHcCCCcceE-EecChhhCC----c-CC
Confidence 45679999999999999999975 235544 4654444432 333333211112222 224554432 2 24
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeE-EEEec
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEV-HVSHK 154 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeI-HVTLk 154 (389)
.||.|+.++...- .+...+..+++.+..+|+++|.+ .++..
T Consensus 95 ~fD~I~~~~~~~~------------~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 95 EYDFILSTVVLMF------------LEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred CcCEEEEecchhh------------CCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 6999998876321 12334678999999999999984 44443
No 61
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=94.84 E-value=0.47 Score=46.07 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=82.9
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCCCCCcCCCCc
Q 016441 25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMELHPDLRTRKF 103 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~~~~Lk~~~F 103 (389)
.+||=+|=|.=.++.+|+..+. ...++|+-.+ .+..+ -|+.|++.+.-.+ +.++. -|+.+ .+...+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis--~~al~---~a~~n~~~~~~~~~v~~~~-~d~~~-----~~~~~~f 183 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDIS--PDALA---VAEENAEKNQLEHRVEFIQ-SNLFE-----PLAGQKI 183 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEEEE-Cchhc-----cCcCCCc
Confidence 5899999999999999998763 3466665443 33332 3667776554322 44333 35432 1223479
Q ss_pred ceEEEcCCCCCCCCCccchHHHHH------------hHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh-h
Q 016441 104 DRIIFNFPHAGFYGKEDNHLLIEM------------HRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI-G 170 (389)
Q Consensus 104 DrIIFNFPH~G~~gkED~~r~Ir~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa-~ 170 (389)
|.||.|=|-+...-.... ..+.. ...+++.++..|..+|+++|.+.+.+-..+. =.+.++.. .
T Consensus 184 DlIvsNPPyi~~~~~~~~-~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~---~~~~~~~~~~ 259 (284)
T TIGR00536 184 DIIVSNPPYIDEEDLADL-PNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ---KSLKELLRIK 259 (284)
T ss_pred cEEEECCCCCCcchhhcC-CcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH---HHHHHHHHhc
Confidence 999999988864211100 01111 2347889999999999999999887754321 13444444 3
Q ss_pred CCcEEEE
Q 016441 171 SSLSLIW 177 (389)
Q Consensus 171 aGL~L~~ 177 (389)
.|+.-++
T Consensus 260 ~~~~~~~ 266 (284)
T TIGR00536 260 FTWYDVE 266 (284)
T ss_pred CCCceeE
Confidence 5664333
No 62
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.78 E-value=0.62 Score=44.87 Aligned_cols=105 Identities=15% Similarity=0.225 Sum_probs=66.2
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
..++.+||=||-|.=..+..|++.+ +..+++.-.. .+ +.+ .+.++... ...+.+ ...|++++. +..
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s-~~-~~~---~a~~~~~~--~~~i~~-~~~D~~~~~----~~~ 115 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDIC-EK-MVN---IAKLRNSD--KNKIEF-EANDILKKD----FPE 115 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECC-HH-HHH---HHHHHcCc--CCceEE-EECCcccCC----CCC
Confidence 4677899999998877788888765 3466665543 22 222 13333221 112333 345776532 345
Q ss_pred CCcceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441 101 RKFDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH 153 (389)
Q Consensus 101 ~~FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL 153 (389)
..||.|+.+ +-|.+. ++ ...+|+.+..+|+|||.+.|+-
T Consensus 116 ~~FD~V~s~~~l~h~~~---~d-----------~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSY---AD-----------KKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred CCeEEEEEhhhHHhCCH---HH-----------HHHHHHHHHHHcCCCcEEEEEE
Confidence 789999985 356542 11 3478899999999999999874
No 63
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=94.78 E-value=0.61 Score=47.43 Aligned_cols=138 Identities=17% Similarity=0.060 Sum_probs=85.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
....+||=||-|.=.+++.|++.++ +.+++++-. |.+ +.++ ++++.. ..++.+ ..-|+..+. +...
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~-S~~-mL~~---A~~k~~---~~~i~~-i~gD~e~lp----~~~~ 177 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQ-SPH-QLAK---AKQKEP---LKECKI-IEGDAEDLP----FPTD 177 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEEC-CHH-HHHH---HHHhhh---ccCCeE-EeccHHhCC----CCCC
Confidence 4567999999999888999988764 346666444 233 3221 333322 234554 334555543 3456
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC--------------CCCcccHHHH
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV--------------PFSNWNIKEL 167 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~--------------PY~sWnIe~L 167 (389)
.||.||-+....-. .| ....|+.+..+|+++|.+.|+-.... ....-.+.++
T Consensus 178 sFDvVIs~~~L~~~---~d-----------~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~l 243 (340)
T PLN02490 178 YADRYVSAGSIEYW---PD-----------PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEW 243 (340)
T ss_pred ceeEEEEcChhhhC---CC-----------HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHH
Confidence 79999987543211 11 11468999999999999877521110 0122345578
Q ss_pred HhhCCcEEEEEeeCCCCCCC
Q 016441 168 AIGSSLSLIWCSEFKIEDYP 187 (389)
Q Consensus 168 Aa~aGL~L~~~~~F~~~~YP 187 (389)
.+++||..++..+..+..|+
T Consensus 244 L~~aGF~~V~i~~i~~~~~~ 263 (340)
T PLN02490 244 FTKAGFKDVKLKRIGPKWYR 263 (340)
T ss_pred HHHCCCeEEEEEEcChhhcc
Confidence 88999999998887765554
No 64
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=94.37 E-value=0.8 Score=41.71 Aligned_cols=103 Identities=21% Similarity=0.162 Sum_probs=62.7
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEe-ccccCCCCCCCCcCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT-CILH-GVDATTMELHPDLRT 100 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv-~Vlf-gVDATkL~~~~~Lk~ 100 (389)
...+||=+|-|.=+++..+++.. ..++++-.+. + +.+ .+..++. ..+. .+-+ ..|+.++... ..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~-~-~~~---~a~~~~~---~~~~~~~~~~~~d~~~~~~~---~~ 110 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASE-E-NIE---VAKLHAK---KDPLLKIEYRCTSVEDLAEK---GA 110 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCH-H-HHH---HHHHHHH---HcCCCceEEEeCCHHHhhcC---CC
Confidence 47799999999888888887742 2466655532 2 221 1233332 3333 2322 3455444321 13
Q ss_pred CCcceEEEcC--CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441 101 RKFDRIIFNF--PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT 155 (389)
Q Consensus 101 ~~FDrIIFNF--PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 155 (389)
..||.|+.++ -|+.. ...+++++..+|+++|.|.++..+
T Consensus 111 ~~~D~i~~~~~l~~~~~----------------~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 111 KSFDVVTCMEVLEHVPD----------------PQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCccEEEehhHHHhCCC----------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 6899999864 23321 347889999999999999987643
No 65
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.31 E-value=0.53 Score=48.32 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=87.3
Q ss_pred EEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceEEE
Q 016441 29 LVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIF 108 (389)
Q Consensus 29 LVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrIIF 108 (389)
.+|=|.|=--++|. +.+++.+ |=.+.+.+ .++.|+++..-.+..|+-.-||++|. |....||-|+-
T Consensus 205 FcGTGgiLiEagl~-----G~~viG~--Did~~mv~---gak~Nl~~y~i~~~~~~~~~Da~~lp----l~~~~vdaIat 270 (347)
T COG1041 205 FCGTGGILIEAGLM-----GARVIGS--DIDERMVR---GAKINLEYYGIEDYPVLKVLDATNLP----LRDNSVDAIAT 270 (347)
T ss_pred cCCccHHHHhhhhc-----CceEeec--chHHHHHh---hhhhhhhhhCcCceeEEEecccccCC----CCCCccceEEe
Confidence 46666665444442 5678888 53444444 38999999886677777666999987 56668999999
Q ss_pred cCCCCCCCCCccchHHHHH--hHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEE
Q 016441 109 NFPHAGFYGKEDNHLLIEM--HRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWC 178 (389)
Q Consensus 109 NFPH~G~~gkED~~r~Ir~--nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~ 178 (389)
+=|=--. .+ ++. --+|+.+||.+++++|+++|.+.+... -+..+-+.+.|+.++..
T Consensus 271 DPPYGrs-t~------~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-------~~~~~~~~~~~f~v~~~ 328 (347)
T COG1041 271 DPPYGRS-TK------IKGEGLDELYEEALESASEVLKPGGRIVFAAP-------RDPRHELEELGFKVLGR 328 (347)
T ss_pred cCCCCcc-cc------cccccHHHHHHHHHHHHHHHhhcCcEEEEecC-------CcchhhHhhcCceEEEE
Confidence 9885322 11 112 347999999999999999999888766 23345677888888876
No 66
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.31 E-value=0.44 Score=48.01 Aligned_cols=133 Identities=23% Similarity=0.262 Sum_probs=88.9
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLD-SYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD-SeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
..+||=||=|.==-+..||+..+ ..-.|-.| +...+. .|+.|+..=.=.+..|.++-..... .. +
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p---~~~vtmvDvn~~Av~----~ar~Nl~~N~~~~~~v~~s~~~~~v------~~-k 224 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP---QAKLTLVDVNARAVE----SARKNLAANGVENTEVWASNLYEPV------EG-K 224 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC---CCeEEEEecCHHHHH----HHHHhHHHcCCCccEEEEecccccc------cc-c
Confidence 34788888888888888888753 33344444 333332 2566665432223345555444443 23 8
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCC-----cc-cHHHHHhhCCcEEE
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFS-----NW-NIKELAIGSSLSLI 176 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~-----sW-nIe~LAa~aGL~L~ 176 (389)
||.||-|=|---+ + ..-..+...+|+.|.+.|++||++.|--....||. .. +++.+|+..||++.
T Consensus 225 fd~IisNPPfh~G--~-------~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg~v~~la~~~gf~Vl 295 (300)
T COG2813 225 FDLIISNPPFHAG--K-------AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVLAKNGGFKVL 295 (300)
T ss_pred ccEEEeCCCccCC--c-------chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcCCEEEEEeCCCEEEE
Confidence 9999999996543 2 13445778999999999999999999988666653 12 57778888888887
Q ss_pred EEe
Q 016441 177 WCS 179 (389)
Q Consensus 177 ~~~ 179 (389)
+..
T Consensus 296 ~a~ 298 (300)
T COG2813 296 RAK 298 (300)
T ss_pred EEe
Confidence 764
No 67
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.27 E-value=0.25 Score=47.51 Aligned_cols=140 Identities=20% Similarity=0.298 Sum_probs=99.8
Q ss_pred ccccccCCCCCC--eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EE-Eecccc
Q 016441 14 EEKWIKHYSSNH--QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT-CI-LHGVDA 89 (389)
Q Consensus 14 ~~K~~~~Yss~~--rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv-~V-lfgVDA 89 (389)
..+|-.-|.... -+|=||=|.=-|-..+|+.. ...|.++--.-. +....-++.+++.|+ .| +...||
T Consensus 37 ~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~--------~~v~~~l~k~~~~~l~Nlri~~~DA 107 (227)
T COG0220 37 PGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRV--------PGVAKALKKIKELGLKNLRLLCGDA 107 (227)
T ss_pred cchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEeh--------HHHHHHHHHHHHcCCCcEEEEcCCH
Confidence 456777777774 58889999999999999987 456888754332 122345666777777 43 478899
Q ss_pred CCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh
Q 016441 90 TTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI 169 (389)
Q Consensus 90 TkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa 169 (389)
+.+-.+. ...+..|+|..|||-.=.|-+. +++|-+=..|++-...+|++||.||+....- .|-.|.+.+...
T Consensus 108 ~~~l~~~-~~~~sl~~I~i~FPDPWpKkRH------~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~-~y~e~~~~~~~~ 179 (227)
T COG0220 108 VEVLDYL-IPDGSLDKIYINFPDPWPKKRH------HKRRLTQPEFLKLYARKLKPGGVLHFATDNE-EYFEWMMLEVLE 179 (227)
T ss_pred HHHHHhc-CCCCCeeEEEEECCCCCCCccc------cccccCCHHHHHHHHHHccCCCEEEEEecCH-HHHHHHHHHHHh
Confidence 9987664 3445899999999988653321 1344455688888999999999999887554 488885555444
Q ss_pred h
Q 016441 170 G 170 (389)
Q Consensus 170 ~ 170 (389)
.
T Consensus 180 ~ 180 (227)
T COG0220 180 H 180 (227)
T ss_pred c
Confidence 3
No 68
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=94.08 E-value=0.51 Score=46.32 Aligned_cols=149 Identities=21% Similarity=0.202 Sum_probs=103.4
Q ss_pred ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHH--HHhCCCEEEeccccCCCC
Q 016441 16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDN--LKKLGTCILHGVDATTME 93 (389)
Q Consensus 16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~--Lr~~Gv~VlfgVDATkL~ 93 (389)
.|+..-. ..+||=+|=|+===++.||+... ...|++--++.+ + |.-|..|++. |+++ +.| +.-|.+.+.
T Consensus 38 ~~~~~~~-~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~--~---a~~A~~nv~ln~l~~r-i~v-~~~Di~~~~ 108 (248)
T COG4123 38 AFAPVPK-KGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEE--A---AEMAQRNVALNPLEER-IQV-IEADIKEFL 108 (248)
T ss_pred hhccccc-CCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHH--H---HHHHHHHHHhCcchhc-eeE-ehhhHHHhh
Confidence 5555555 88999999999988888888753 367888777743 2 2347888876 4432 343 456888877
Q ss_pred CCCCcCCCCcceEEEcCCCCCCCCC--ccchHHHHHhHH--HHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh
Q 016441 94 LHPDLRTRKFDRIIFNFPHAGFYGK--EDNHLLIEMHRS--LVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI 169 (389)
Q Consensus 94 ~~~~Lk~~~FDrIIFNFPH~G~~gk--ED~~r~Ir~nr~--LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa 169 (389)
++... .+||.||.|=|+--.... ++..+-+-.|.. .+.++.+.|+++|+++|.+.+-|... ..=.|.++++
T Consensus 109 ~~~~~--~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---rl~ei~~~l~ 183 (248)
T COG4123 109 KALVF--ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---RLAEIIELLK 183 (248)
T ss_pred hcccc--cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---HHHHHHHHHH
Confidence 66533 479999999999874222 222233333322 37899999999999999999888633 3446778888
Q ss_pred hCCcEEEEE
Q 016441 170 GSSLSLIWC 178 (389)
Q Consensus 170 ~aGL~L~~~ 178 (389)
..+|...+.
T Consensus 184 ~~~~~~k~i 192 (248)
T COG4123 184 SYNLEPKRI 192 (248)
T ss_pred hcCCCceEE
Confidence 777665553
No 69
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.07 E-value=0.78 Score=46.57 Aligned_cols=104 Identities=26% Similarity=0.300 Sum_probs=70.0
Q ss_pred HHHHHHhCCCE--EEeccccCCCCCCCCcCCCCcceEEEcCCCCCCCCCc----c-----chHHHHHhHHHHHHHHHhhH
Q 016441 72 NLDNLKKLGTC--ILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKE----D-----NHLLIEMHRSLVRDFFRNSS 140 (389)
Q Consensus 72 Ni~~Lr~~Gv~--VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkE----D-----~~r~Ir~nr~LL~~FF~SA~ 140 (389)
-.+.|+++|+. ++...|+.++..... ...+||+|+-+=|+.|. |.= | ....|.....|=...+.+|.
T Consensus 198 l~~nl~RlG~~nv~~~~~d~~~~~~~~~-~~~~fD~iLlDaPCSg~-G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~ 275 (355)
T COG0144 198 LRENLKRLGVRNVIVVNKDARRLAELLP-GGEKFDRILLDAPCSGT-GVIRRDPDVKWRRTPEDIAELAKLQKEILAAAL 275 (355)
T ss_pred HHHHHHHcCCCceEEEeccccccccccc-ccCcCcEEEECCCCCCC-cccccCccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 33445566655 677788877654331 22379999999999994 321 1 33456666677788899999
Q ss_pred hcccCCCeEEEEecCCCCCCcccHH-H-HHhhCCcEEEE
Q 016441 141 GMLRDGGEVHVSHKTTVPFSNWNIK-E-LAIGSSLSLIW 177 (389)
Q Consensus 141 ~lL~~~GeIHVTLk~g~PY~sWnIe-~-LAa~aGL~L~~ 177 (389)
++|++||.+..+.|+-.|-..=.++ . |.+..++.+..
T Consensus 276 ~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~ 314 (355)
T COG0144 276 KLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEP 314 (355)
T ss_pred HhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeec
Confidence 9999999999999987764333333 3 33334555554
No 70
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.87 E-value=0.29 Score=51.82 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=93.6
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC---CEEEeccccCCCCCCCCcCC
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG---TCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G---v~VlfgVDATkL~~~~~Lk~ 100 (389)
..-+|=||=|+=.|...+|+.+ +..|+++--.... ....-+...++.| +.++.+ |+..+... +..
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~--------~~~~~~~~~~~~~l~N~~~~~~-~~~~~~~~--~~~ 415 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLN--------GVANVLKLAGEQNITNFLLFPN-NLDLILND--LPN 415 (506)
T ss_pred CceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHH--------HHHHHHHHHHHcCCCeEEEEcC-CHHHHHHh--cCc
Confidence 4457889999999999999987 4678888755421 1222233334443 455443 77766544 456
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEE
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIW 177 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~ 177 (389)
..+|+|..|||-.=.|-+. +++|-+=..|+.....+|++||+|++..... +|-.|-++.+.+..++.+..
T Consensus 416 ~sv~~i~i~FPDPWpKkrh------~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~-~y~~~~~~~~~~~~~f~~~~ 485 (506)
T PRK01544 416 NSLDGIYILFPDPWIKNKQ------KKKRIFNKERLKILQDKLKDNGNLVFASDIE-NYFYEAIELIQQNGNFEIIN 485 (506)
T ss_pred ccccEEEEECCCCCCCCCC------ccccccCHHHHHHHHHhcCCCCEEEEEcCCH-HHHHHHHHHHHhCCCeEecc
Confidence 7799999999998764332 2344445678888899999999999776544 59999888887777787653
No 71
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.79 E-value=1 Score=41.63 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=66.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
..+++||=||=|.=.++..|++..+....+ ++.|..+++.+ .+++|++.+.-.+..-+..-|+.+.-. ...
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V--~~iD~~~~~~~---~a~~~l~~~~~~~~v~~~~~d~~~~~~----~~~ 141 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKV--YTVEIVKELAI---YAAQNIERLGYWGVVEVYHGDGKRGLE----KHA 141 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEE--EEEeCCHHHHH---HHHHHHHHcCCCCcEEEEECCcccCCc----cCC
Confidence 456899999999999999999877533344 45554455543 366677654322212234456655321 236
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT 156 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 156 (389)
.||+|+.+..-.- + -......|++||.+.+...++
T Consensus 142 ~fD~Ii~~~~~~~----------~----------~~~l~~~L~~gG~lvi~~~~~ 176 (205)
T PRK13944 142 PFDAIIVTAAAST----------I----------PSALVRQLKDGGVLVIPVEEG 176 (205)
T ss_pred CccEEEEccCcch----------h----------hHHHHHhcCcCcEEEEEEcCC
Confidence 8999999865211 1 113446799999999987544
No 72
>PLN02366 spermidine synthase
Probab=93.70 E-value=0.34 Score=48.45 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=71.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhh-hhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKY-KRAKSNLDNLKKLGTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY-~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk 99 (389)
....+||.||=|+-+.+..|+++ .....|++--+|.. -++.++| +.. +. .+++..++|+.+ ||.+.-+. ..
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~--~~-~~~dpRv~vi~~-Da~~~l~~--~~ 162 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDL--AV-GFDDPRVNLHIG-DGVEFLKN--AP 162 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhh--cc-ccCCCceEEEEC-hHHHHHhh--cc
Confidence 34678999999999999999876 33456777777743 2333433 221 11 244556776654 55432111 12
Q ss_pred CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEE
Q 016441 100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVH 150 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIH 150 (389)
.++||.||-+.+...+ . ...-.-..||+.++.+|+++|.+.
T Consensus 163 ~~~yDvIi~D~~dp~~--~--------~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 163 EGTYDAIIVDSSDPVG--P--------AQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred CCCCCEEEEcCCCCCC--c--------hhhhhHHHHHHHHHHhcCCCcEEE
Confidence 4679999998765422 1 112234689999999999999873
No 73
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.66 E-value=2.1 Score=41.58 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=67.2
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCc
Q 016441 20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDL 98 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~L 98 (389)
.+++.++||=||=|.=.++.++++++. ++.+|.+|..+ +.+ .+++|+++..-. .++++ .-|+-+.. +
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p---~~~~~~~D~~~-~~~---~a~~~~~~~gl~~rv~~~-~~d~~~~~----~ 213 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFP---ELDSTILNLPG-AID---LVNENAAEKGVADRMRGI-AVDIYKES----Y 213 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCC---CCEEEEEecHH-HHH---HHHHHHHhCCccceEEEE-ecCccCCC----C
Confidence 367788999999999999999999873 35567778643 333 255565543211 13333 33654421 2
Q ss_pred CCCCcceEEE-cCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 99 RTRKFDRIIF-NFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 99 k~~~FDrIIF-NFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
..+|.|++ +.-|.- +.+.....|+.+.+.|+|||.+.|.
T Consensus 214 --~~~D~v~~~~~lh~~-------------~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 214 --PEADAVLFCRILYSA-------------NEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred --CCCCEEEeEhhhhcC-------------ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 23688764 434432 1123456788899999999999887
No 74
>PTZ00146 fibrillarin; Provisional
Probab=93.26 E-value=4 Score=41.03 Aligned_cols=134 Identities=15% Similarity=0.117 Sum_probs=82.7
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEeccccCCCCCCCCc
Q 016441 20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-KKLGTCILHGVDATTMELHPDL 98 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-r~~Gv~VlfgVDATkL~~~~~L 98 (389)
+..+.++||=+|=|.=+|+..|++..+..-.|+|--+. +.+.+.. ++.. +..++..+.+ |++.......+
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s--~r~~~dL------l~~ak~r~NI~~I~~-Da~~p~~y~~~ 199 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS--HRSGRDL------TNMAKKRPNIVPIIE-DARYPQKYRML 199 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc--HHHHHHH------HHHhhhcCCCEEEEC-CccChhhhhcc
Confidence 45678899999999999999999987644467775433 2222111 1111 1245655543 77643211111
Q ss_pred CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC-----CC----CCcccHHHHHh
Q 016441 99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT-----VP----FSNWNIKELAI 169 (389)
Q Consensus 99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g-----~P----Y~sWnIe~LAa 169 (389)
...||+|+-+... .|+. .-+..+|..+|+++|.+.|..+.. .| +. +.+ +..+
T Consensus 200 -~~~vDvV~~Dva~------pdq~----------~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~-~ev-~~L~ 260 (293)
T PTZ00146 200 -VPMVDVIFADVAQ------PDQA----------RIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFA-SEV-QKLK 260 (293)
T ss_pred -cCCCCEEEEeCCC------cchH----------HHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHH-HHH-HHHH
Confidence 1369999998852 1221 123344888999999999976532 22 23 455 5568
Q ss_pred hCCcEEEEEeeC
Q 016441 170 GSSLSLIWCSEF 181 (389)
Q Consensus 170 ~aGL~L~~~~~F 181 (389)
++||..++.+..
T Consensus 261 ~~GF~~~e~v~L 272 (293)
T PTZ00146 261 KEGLKPKEQLTL 272 (293)
T ss_pred HcCCceEEEEec
Confidence 889998888765
No 75
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=93.26 E-value=0.76 Score=43.54 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=68.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCcCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
..+.+||-||=|.=..+..|++.+. ..+...|..|...++.+. |+.+++..... .+.+ +.-|+..+. +
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~-~~~~~v~gvD~S~~ml~~---A~~~~~~~~~~~~v~~-~~~d~~~~~----~-- 123 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIH-HDNCKIIAIDNSPAMIER---CRRHIDAYKAPTPVDV-IEGDIRDIA----I-- 123 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcC-CCCCeEEEEeCCHHHHHH---HHHHHHhcCCCCCeEE-EeCChhhCC----C--
Confidence 3567899998887777777877542 123456677855555543 56666543222 2444 455666542 1
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH 153 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL 153 (389)
..+|.|+.|+..--. +..-...+++.+..+|+|||.+.++-
T Consensus 124 ~~~D~vv~~~~l~~l------------~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 124 ENASMVVLNFTLQFL------------EPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CCCCEEehhhHHHhC------------CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 348999988753211 01113478888999999999998874
No 76
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=93.03 E-value=0.72 Score=47.20 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=66.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.++++||=||=|.=.++..+++.++ ..|++..+. .+.+. .++++++. .++.+. -.|+..+ ..
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS-~~~l~----~A~~~~~~---l~v~~~-~~D~~~l-------~~ 227 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTIS-AEQQK----LAQERCAG---LPVEIR-LQDYRDL-------NG 227 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCC-HHHHH----HHHHHhcc---CeEEEE-ECchhhc-------CC
Confidence 5678999999999999999998764 467776554 22221 24444432 233333 2355443 25
Q ss_pred CcceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441 102 KFDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH 153 (389)
Q Consensus 102 ~FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL 153 (389)
.||.|+-+ |-|+|. + + +..||+.+..+|+|+|.+.+..
T Consensus 228 ~fD~Ivs~~~~ehvg~---~--------~---~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 228 QFDRIVSVGMFEHVGP---K--------N---YRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CCCEEEEeCchhhCCh---H--------H---HHHHHHHHHHHcCCCcEEEEEE
Confidence 79999865 567763 1 1 4478999999999999998864
No 77
>PRK06922 hypothetical protein; Provisional
Probab=92.90 E-value=0.74 Score=50.97 Aligned_cols=118 Identities=19% Similarity=0.309 Sum_probs=74.7
Q ss_pred ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC
Q 016441 18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD 97 (389)
Q Consensus 18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~ 97 (389)
+..+.++.+||=||=|.=.++..|++.+. ..+++ ..|-...+.+. ++.++... ...+.++.+ |+.++...
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVt--GIDIS~~MLe~---Ararl~~~-g~~ie~I~g-Da~dLp~~-- 482 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIY--GIDISENVIDT---LKKKKQNE-GRSWNVIKG-DAINLSSS-- 482 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEE--EEECCHHHHHH---HHHHhhhc-CCCeEEEEc-chHhCccc--
Confidence 45666788999999988888888988763 34555 55644444432 44443221 123444444 77776432
Q ss_pred cCCCCcceEEEcCCC------CCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 98 LRTRKFDRIIFNFPH------AGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 98 Lk~~~FDrIIFNFPH------~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
+....||.|++|++- +...+. ..+.+-+..+++++..+|+|||.+.|.
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~-------~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGK-------KFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccc-------cccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 345689999999642 211111 123345778999999999999999986
No 78
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=92.73 E-value=2 Score=40.36 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=66.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+..+||=||-|.=.++..|++.++ +.++++.-.. +++.+. +..++ .++.+ ...|+..+. ...
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s--~~~i~~---a~~~~-----~~~~~-~~~d~~~~~-----~~~ 92 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSS--PAMLAE---ARSRL-----PDCQF-VEADIASWQ-----PPQ 92 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECC--HHHHHH---HHHhC-----CCCeE-EECchhccC-----CCC
Confidence 5678999999999999999998763 4467666443 333332 33332 12333 344666542 235
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT 155 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 155 (389)
.||.|+.|+..--. .| ...+|+.+..+|++||.+.++..+
T Consensus 93 ~fD~v~~~~~l~~~---~d-----------~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 93 ALDLIFANASLQWL---PD-----------HLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CccEEEEccChhhC---CC-----------HHHHHHHHHHhcCCCcEEEEECCC
Confidence 89999999763221 12 135788888999999999998643
No 79
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=92.69 E-value=0.25 Score=46.69 Aligned_cols=102 Identities=26% Similarity=0.335 Sum_probs=58.7
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441 20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk 99 (389)
...++++||-+-=|==.||+.+|+. +.+..|+|--.....-- -.+.|++.=+-.+....+.-||.++-.
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~-----~L~~Ni~lNkv~~~i~~~~~D~~~~~~----- 166 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVE-----YLKENIRLNKVENRIEVINGDAREFLP----- 166 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHH-----HHHHHHHHTT-TTTEEEEES-GGG--------
T ss_pred cCCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHH-----HHHHHHHHcCCCCeEEEEcCCHHHhcC-----
Confidence 4566778776544444455556664 34567998877733211 123344333333555677889998764
Q ss_pred CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEE
Q 016441 100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVH 150 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIH 150 (389)
...|||||.|.|+... .|+..|..+++++|-||
T Consensus 167 ~~~~drvim~lp~~~~------------------~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 EGKFDRVIMNLPESSL------------------EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TT-EEEEEE--TSSGG------------------GGHHHHHHHEEEEEEEE
T ss_pred ccccCEEEECChHHHH------------------HHHHHHHHHhcCCcEEE
Confidence 4789999999999863 68888999999999888
No 80
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=92.65 E-value=1.5 Score=40.93 Aligned_cols=108 Identities=14% Similarity=0.190 Sum_probs=68.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCcCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
.+..+||=||=|.=.++..|++.+.. .+.-.|.+|-.+++.+ .|+.+++.... ..++++ .-|+.++. +
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~-p~~~v~gvD~s~~ml~---~a~~~~~~~~~~~~v~~~-~~d~~~~~----~-- 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQ-PNVKIIGIDNSQPMVE---RCRQHIAAYHSEIPVEIL-CNDIRHVE----I-- 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCC-CCCeEEEEeCCHHHHH---HHHHHHHhcCCCCCeEEE-ECChhhCC----C--
Confidence 46678999999999999999987531 2344555664444443 25556544321 124444 34777653 2
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
..+|.|+.++.-.-. .+ .-...+++.+..+|++||.+.++
T Consensus 121 ~~~d~v~~~~~l~~~---~~---------~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 121 KNASMVILNFTLQFL---PP---------EDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred CCCCEEeeecchhhC---CH---------HHHHHHHHHHHHhcCCCeEEEEe
Confidence 348999888752111 00 01236888899999999999987
No 81
>PHA03411 putative methyltransferase; Provisional
Probab=92.56 E-value=1.8 Score=43.20 Aligned_cols=135 Identities=16% Similarity=0.187 Sum_probs=82.7
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF 103 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F 103 (389)
..+||=+|=|.=-|+..+++..+ +.+|++.-.+. .+.+. ++.|+ .++.+ ..-|+..+. ...+|
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp--~al~~---Ar~n~-----~~v~~-v~~D~~e~~-----~~~kF 127 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNP--EFARI---GKRLL-----PEAEW-ITSDVFEFE-----SNEKF 127 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCH--HHHHH---HHHhC-----cCCEE-EECchhhhc-----ccCCC
Confidence 45898776666666666766542 35677765553 33321 33332 14554 344665542 23679
Q ss_pred ceEEEcCCCCCCCCCccchHHHHHh------HHH-HHHHHHhhHhcccCCCeEEEEecCCCCC-----CcccHHHHHhhC
Q 016441 104 DRIIFNFPHAGFYGKEDNHLLIEMH------RSL-VRDFFRNSSGMLRDGGEVHVSHKTTVPF-----SNWNIKELAIGS 171 (389)
Q Consensus 104 DrIIFNFPH~G~~gkED~~r~Ir~n------r~L-L~~FF~SA~~lL~~~GeIHVTLk~g~PY-----~sWnIe~LAa~a 171 (389)
|.||.|-|..-. ..+++....+.. ..| +..|++....+|+++|.+. ..-.+.|+ +.=...++-+++
T Consensus 128 DlIIsNPPF~~l-~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~-~~yss~~~y~~sl~~~~y~~~l~~~ 205 (279)
T PHA03411 128 DVVISNPPFGKI-NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG-FAYSGRPYYDGTMKSNKYLKWSKQT 205 (279)
T ss_pred cEEEEcCCcccc-CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE-EEEeccccccccCCHHHHHHHHHhc
Confidence 999999998864 334433333321 334 7899999999999999444 44677774 223445577888
Q ss_pred CcEEEE
Q 016441 172 SLSLIW 177 (389)
Q Consensus 172 GL~L~~ 177 (389)
||++..
T Consensus 206 g~~~~~ 211 (279)
T PHA03411 206 GLVTYA 211 (279)
T ss_pred CcEecC
Confidence 987644
No 82
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=92.50 E-value=3.7 Score=41.30 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=77.7
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
++++||=||=|+=-++..++.. + +.. .+.+|....+......++ ..+...+...+...|+..|.. ...
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~-g-~~~--v~GiDpS~~ml~q~~~~~---~~~~~~~~v~~~~~~ie~lp~-----~~~ 188 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGH-G-AKS--LVGIDPTVLFLCQFEAVR---KLLDNDKRAILEPLGIEQLHE-----LYA 188 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHc-C-CCE--EEEEcCCHHHHHHHHHHH---HHhccCCCeEEEECCHHHCCC-----CCC
Confidence 3579999999998888888765 3 223 366775444443322111 111222222223356655542 136
Q ss_pred cceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec--CCC------C---C----Ccc---
Q 016441 103 FDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK--TTV------P---F----SNW--- 162 (389)
Q Consensus 103 FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk--~g~------P---Y----~sW--- 162 (389)
||.|+.+ +-|... ...+++.+..+|++||++.|+.. ++. | | +.|
T Consensus 189 FD~V~s~gvL~H~~d----------------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flp 252 (314)
T TIGR00452 189 FDTVFSMGVLYHRKS----------------PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIP 252 (314)
T ss_pred cCEEEEcchhhccCC----------------HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCC
Confidence 9999987 344431 34688999999999999998632 221 2 2 123
Q ss_pred ---cHHHHHhhCCcEEEEEee
Q 016441 163 ---NIKELAIGSSLSLIWCSE 180 (389)
Q Consensus 163 ---nIe~LAa~aGL~L~~~~~ 180 (389)
.++...+++||..++.+.
T Consensus 253 S~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 253 SVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred CHHHHHHHHHHCCCeEEEEEe
Confidence 234567788999887654
No 83
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.18 E-value=1.5 Score=44.18 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=65.3
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
-.++++||-||-|.=.++..|++..+....|++. |..+++.+ .|++|++.+.-..+.+..+ |+.+.... .
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgV--Dis~~~l~---~Ar~~l~~~g~~nV~~i~g-D~~~~~~~----~ 147 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICE---IAKRNVRRLGIENVIFVCG-DGYYGVPE----F 147 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEE--ECCHHHHH---HHHHHHHHcCCCcEEEEeC-Chhhcccc----c
Confidence 3567899999999999999999876533346654 54444443 3666766554334555544 76554321 2
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT 155 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 155 (389)
..||.|+..+ |. + ++ . ..+...|+++|.+.+....
T Consensus 148 ~~fD~Ii~~~---g~---~----~i------p----~~~~~~LkpgG~Lvv~~~~ 182 (322)
T PRK13943 148 APYDVIFVTV---GV---D----EV------P----ETWFTQLKEGGRVIVPINL 182 (322)
T ss_pred CCccEEEECC---ch---H----Hh------H----HHHHHhcCCCCEEEEEeCC
Confidence 4699999863 21 1 11 1 1134579999998886643
No 84
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=92.05 E-value=2.1 Score=44.10 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=68.2
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCcC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDLR 99 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~Lk 99 (389)
..+..+||=||=|.=..+..|++.++ ..+++.-.. .+.+. .|..|.. ..+..|- ...|+..+. +.
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS-~~~l~----~A~~~~~---~~~~~v~~~~~d~~~~~----~~ 329 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLS-VNMIS----FALERAI---GRKCSVEFEVADCTKKT----YP 329 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECC-HHHHH----HHHHHhh---cCCCceEEEEcCcccCC----CC
Confidence 35678999999999889999998763 466666553 33332 2444543 2222333 245666542 33
Q ss_pred CCCcceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441 100 TRKFDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH 153 (389)
Q Consensus 100 ~~~FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL 153 (389)
...||.|+.. +-|+.- ...+|+.+..+|+|||.+.|+-
T Consensus 330 ~~~fD~I~s~~~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQD----------------KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCCEEEEEECCcccccCC----------------HHHHHHHHHHHcCCCeEEEEEE
Confidence 4689999986 555531 1367889999999999999874
No 85
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.00 E-value=0.39 Score=47.12 Aligned_cols=130 Identities=20% Similarity=0.302 Sum_probs=66.4
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHH-HHHhCCCEE-EeccccCCCCCCCCcCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLD-NLKKLGTCI-LHGVDATTMELHPDLRT 100 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~-~Lr~~Gv~V-lfgVDATkL~~~~~Lk~ 100 (389)
.+++||+|||+|+ .|+|+|-. +.+.+|+.=-.| +.+.+ -|+ .-++.|..| .+--|..+-- +.--.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~-~~~~~I~VvDiD--eRll~-------fI~~~a~~~gl~i~~~~~DlR~~L--P~~~~ 110 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALT-GLPKRITVVDID--ERLLD-------FINRVAEEEGLPIEAVHYDLRDPL--PEELR 110 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S---HHHHH-------HHHHHHHHHT--EEEE---TTS-----TTTS
T ss_pred cCCEEEEEcCCcH-HHHHHHhh-CCCCeEEEEEcC--HHHHH-------HHHHHHHHcCCceEEEEecccccC--CHHHh
Confidence 4678999999997 35555533 335676554444 33332 111 122334332 2333443311 10114
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCC-eEEEEecCCCC-CCcc-cHHHHHhhCCcEEEE
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGG-EVHVSHKTTVP-FSNW-NIKELAIGSSLSLIW 177 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~G-eIHVTLk~g~P-Y~sW-nIe~LAa~aGL~L~~ 177 (389)
++||.++.+=|-+-- | +.-|+.-+...|+..| .+.+.+...++ ...| ++.+...+.||.+.+
T Consensus 111 ~~fD~f~TDPPyT~~-G--------------~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 111 GKFDVFFTDPPYTPE-G--------------LKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp S-BSEEEE---SSHH-H--------------HHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEE
T ss_pred cCCCEEEeCCCCCHH-H--------------HHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHH
Confidence 789999999998861 1 5578888999998655 66666666553 4667 788888899999998
Q ss_pred Eee
Q 016441 178 CSE 180 (389)
Q Consensus 178 ~~~ 180 (389)
..|
T Consensus 176 ii~ 178 (243)
T PF01861_consen 176 IIP 178 (243)
T ss_dssp EEE
T ss_pred HHh
Confidence 643
No 86
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=91.84 E-value=2.2 Score=39.09 Aligned_cols=100 Identities=22% Similarity=0.279 Sum_probs=60.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+..+||=||-|.=.++..|++..+ .+++ .|..+++.+ .+.+|++.+.-.++.+..+ |+.+. .. ...
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~---~v~~--vd~~~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~--~~--~~~ 143 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVR---RVFS--VERIKTLQW---EAKRRLKQLGLHNVSVRHG-DGWKG--WP--AYA 143 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC---EEEE--EeCCHHHHH---HHHHHHHHCCCCceEEEEC-CcccC--CC--cCC
Confidence 4678999999998777877776542 4544 454344443 3666666543223555444 44321 11 236
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
.||+|+.+.+... + .+....+|+++|.+.+...
T Consensus 144 ~fD~I~~~~~~~~----------~----------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPE----------I----------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchh----------h----------hHHHHHhcCCCcEEEEEEc
Confidence 7999999864211 1 1223568999999998876
No 87
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=91.74 E-value=0.28 Score=47.21 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=81.9
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
+.++||++|=|+-+-+..|.++. +...|++--+|.. -++.++|=...... +++..++|++ -||.+.-+.. ..+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~-~Dg~~~l~~~--~~~ 149 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIII-GDGRKFLKET--QEE 149 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEE-STHHHHHHTS--SST
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEE-hhhHHHHHhc--cCC
Confidence 57789999999999999998754 3467888888844 24555552211111 5566777754 4665432211 112
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC----CcccHHHHHhhCCc
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF----SNWNIKELAIGSSL 173 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY----~sWnIe~LAa~aGL 173 (389)
+||.||-+-+.... .. .+ -.-..||+.|++.|+++|-+.+-. +.|+ ..+.|.+.-+...-
T Consensus 150 ~yDvIi~D~~dp~~--~~-------~~-l~t~ef~~~~~~~L~~~Gv~v~~~--~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 150 KYDVIIVDLTDPDG--PA-------PN-LFTREFYQLCKRRLKPDGVLVLQA--GSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp -EEEEEEESSSTTS--CG-------GG-GSSHHHHHHHHHHEEEEEEEEEEE--EETTTTHHHHHHHHHHHHTTSS
T ss_pred cccEEEEeCCCCCC--Cc-------cc-ccCHHHHHHHHhhcCCCcEEEEEc--cCcccchHHHHHHHHHHHHhCC
Confidence 89999998887322 11 12 345799999999999999988776 3333 33555554444444
No 88
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=91.66 E-value=2.4 Score=40.05 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=65.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
....+||=||=|.=.++..|++.+. ...++ ..|..+.+.+. | ++.++.++. .|+..+. ...
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~--gvD~s~~~~~~---a-------~~~~~~~~~-~d~~~~~-----~~~ 88 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWP-GAVIE--ALDSSPEMVAA---A-------RERGVDART-GDVRDWK-----PKP 88 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEE--EEECCHHHHHH---H-------HhcCCcEEE-cChhhCC-----CCC
Confidence 4567999998888888889988762 34554 45543333332 2 234565543 5766542 235
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
.||.|+.|+..-=. .| ...+++.+..+|+|||.+.++.-
T Consensus 89 ~fD~v~~~~~l~~~---~d-----------~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 89 DTDVVVSNAALQWV---PE-----------HADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CceEEEEehhhhhC---CC-----------HHHHHHHHHHhCCCCcEEEEEcC
Confidence 79999999864221 11 13567788899999999998853
No 89
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=91.62 E-value=2.1 Score=39.21 Aligned_cols=102 Identities=21% Similarity=0.174 Sum_probs=62.2
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCcCCCC
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDLRTRK 102 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~Lk~~~ 102 (389)
..+||=+|-|.=.++..||+. +..|+|. |-.+++.++ +..+. +..|+.|. ...|+... .+. ..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~---g~~V~~i--D~s~~~l~~---a~~~~---~~~~~~v~~~~~d~~~~----~~~-~~ 94 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA---GYDVRAW--DHNPASIAS---VLDMK---ARENLPLRTDAYDINAA----ALN-ED 94 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC---CCeEEEE--ECCHHHHHH---HHHHH---HHhCCCceeEeccchhc----ccc-CC
Confidence 468999999999999999974 2456654 533444443 22222 23344322 12343322 122 46
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCe-EEEEe
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGE-VHVSH 153 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~Ge-IHVTL 153 (389)
||.|+.+++..-. +...+..+++++..+|++||. +.++.
T Consensus 95 fD~I~~~~~~~~~------------~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 95 YDFIFSTVVFMFL------------QAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CCEEEEecccccC------------CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999988663221 223456889999999999998 44443
No 90
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=91.28 E-value=0.82 Score=41.78 Aligned_cols=126 Identities=19% Similarity=0.181 Sum_probs=74.6
Q ss_pred EEecCChhHHHHHHHHhCCC------CcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 29 LVGEGDFSFSLCLALAFGSA------SNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 29 LVGEGDFSFSlSLa~~~gs~------~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
.+|-|.+--..++......+ ..+++.-.| .+..+ .|..|++...-.+..-+...|+++|. +....
T Consensus 36 ~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~--~~~v~---~a~~N~~~ag~~~~i~~~~~D~~~l~----~~~~~ 106 (179)
T PF01170_consen 36 FCGSGTILIEAALMGANIPPLNDINELKIIGSDID--PKAVR---GARENLKAAGVEDYIDFIQWDARELP----LPDGS 106 (179)
T ss_dssp T-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESS--HHHHH---HHHHHHHHTT-CGGEEEEE--GGGGG----GTTSB
T ss_pred CCCCCHHHHHHHHHhhCcccccccccccEEecCCC--HHHHH---HHHHHHHhcccCCceEEEecchhhcc----cccCC
Confidence 58999888888876543210 124444444 33333 37788765543334455566999987 34568
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEE
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLI 176 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~ 176 (389)
+|.||.|=|.--.-+. -...++|...|++.++++|++ ..+.|+..+. .+++.....+++..
T Consensus 107 ~d~IvtnPPyG~r~~~------~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~------~~~~~~~~~~~~~~ 167 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGS------KKDLEKLYRQFLRELKRVLKP-RAVFLTTSNR------ELEKALGLKGWRKR 167 (179)
T ss_dssp SCEEEEE--STTSHCH------HHHHHHHHHHHHHHHHCHSTT-CEEEEEESCC------CHHHHHTSTTSEEE
T ss_pred CCEEEECcchhhhccC------HHHHHHHHHHHHHHHHHHCCC-CEEEEEECCH------HHHHHhcchhhceE
Confidence 9999999998432111 234589999999999999998 6666665433 34555555554433
No 91
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=91.21 E-value=2.4 Score=42.44 Aligned_cols=137 Identities=22% Similarity=0.301 Sum_probs=93.8
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441 20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk 99 (389)
+-.++++||=||=|==+.+.=+|+++ +++||++++.. +++ ..+ -+.+++.|....-.|- |....++.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~-~Q~----~~~---~~r~~~~gl~~~v~v~---l~d~rd~~ 135 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSE-EQL----AYA---EKRIAARGLEDNVEVR---LQDYRDFE 135 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCH-HHH----HHH---HHHHHHcCCCcccEEE---eccccccc
Confidence 56789999999999999999999998 57999999873 222 112 2346667766222222 22233333
Q ss_pred CCCcceEEE--cCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC--CCC----------------
Q 016441 100 TRKFDRIIF--NFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT--VPF---------------- 159 (389)
Q Consensus 100 ~~~FDrIIF--NFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g--~PY---------------- 159 (389)
.+|||||- -|=|+|. +. ...||+.+..+|+++|.+.+---++ +++
T Consensus 136 -e~fDrIvSvgmfEhvg~---~~-----------~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~ 200 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGK---EN-----------YDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGE 200 (283)
T ss_pred -cccceeeehhhHHHhCc---cc-----------HHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCc
Confidence 34999986 6788874 11 5699999999999999765322111 111
Q ss_pred --CcccHHHHHhhCCcEEEEEeeCCCC
Q 016441 160 --SNWNIKELAIGSSLSLIWCSEFKIE 184 (389)
Q Consensus 160 --~sWnIe~LAa~aGL~L~~~~~F~~~ 184 (389)
....|.+.+.++|+.+.+...|.+.
T Consensus 201 lPs~~~i~~~~~~~~~~v~~~~~~~~h 227 (283)
T COG2230 201 LPSISEILELASEAGFVVLDVESLRPH 227 (283)
T ss_pred CCCHHHHHHHHHhcCcEEehHhhhcHH
Confidence 3467777889999999988887765
No 92
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=91.19 E-value=3.2 Score=41.85 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=80.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeccccCCCCCCCCcCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-KLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+.+||=||=|+=-|+..|++. +.++ |..|..+++.+. |+.+.+... ..++.++. -|+.++.. ...
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V--~GID~s~~~i~~---Ar~~~~~~~~~~~i~~~~-~dae~l~~----~~~ 197 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATV--TGVDAVDKNVKI---ARLHADMDPVTSTIEYLC-TTAEKLAD----EGR 197 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEE--EEEeCCHHHHHH---HHHHHHhcCcccceeEEe-cCHHHhhh----ccC
Confidence 4568999999998899999863 2344 556755555442 333322110 11344433 46666532 346
Q ss_pred CcceEEEcC--CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC------------------CC--
Q 016441 102 KFDRIIFNF--PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV------------------PF-- 159 (389)
Q Consensus 102 ~FDrIIFNF--PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------------------PY-- 159 (389)
.||.|+... -|+.. ...|++.+..+|+|||.+.|+--+.. |.
T Consensus 198 ~FD~Vi~~~vLeHv~d----------------~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gt 261 (322)
T PLN02396 198 KFDAVLSLEVIEHVAN----------------PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGT 261 (322)
T ss_pred CCCEEEEhhHHHhcCC----------------HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCC
Confidence 899999765 34431 23789999999999999998853221 11
Q ss_pred Ccc-------cHHHHHhhCCcEEEEEeeC
Q 016441 160 SNW-------NIKELAIGSSLSLIWCSEF 181 (389)
Q Consensus 160 ~sW-------nIe~LAa~aGL~L~~~~~F 181 (389)
..| .+..+.+++||.+.+..-+
T Consensus 262 h~~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 262 HQWSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred cCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 123 3666777888888776433
No 93
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=91.12 E-value=0.3 Score=39.43 Aligned_cols=98 Identities=21% Similarity=0.318 Sum_probs=58.8
Q ss_pred EEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceE
Q 016441 27 ILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRI 106 (389)
Q Consensus 27 ILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrI 106 (389)
||=+|=|.=.....|++.+..+.+...+..|-.+++.+. ++++..+ ....++. +--|++++.. ...+||.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~---~~~~~~~-~~~~~~~-~~~D~~~l~~----~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLEL---AKKRFSE-DGPKVRF-VQADARDLPF----SDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHH---HHHHSHH-TTTTSEE-EESCTTCHHH----HSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHH---HHHhchh-cCCceEE-EECCHhHCcc----cCCCeeEE
Confidence 566788888899999988722223555666733333332 4444443 2224443 6678877642 35699999
Q ss_pred EEc---CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCC
Q 016441 107 IFN---FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGG 147 (389)
Q Consensus 107 IFN---FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~G 147 (389)
++. +.|. .++-+..+|+++.++|+|+|
T Consensus 72 ~~~~~~~~~~--------------~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHL--------------SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGS--------------SHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCC--------------CHHHHHHHHHHHHHHhCCCC
Confidence 993 4453 33446789999999999887
No 94
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=91.10 E-value=3.4 Score=43.92 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=87.4
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeccccCCCCCCCCcCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC--ILHGVDATTMELHPDLRT 100 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~--VlfgVDATkL~~~~~Lk~ 100 (389)
++++||=++=|==+=|..||...+....|+|.-.+. ++.....+|++. .|+. ++..-|++++.... .
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~-----~R~~~L~~nl~r---~G~~nv~v~~~D~~~~~~~~---~ 181 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSA-----SRVKVLHANISR---CGVSNVALTHFDGRVFGAAL---P 181 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCH-----HHHHHHHHHHHH---cCCCeEEEEeCchhhhhhhc---h
Confidence 455665555444444555666554334577655542 222234556655 4542 45567888876532 3
Q ss_pred CCcceEEEcCCCCCCCCC--cc-------chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-CcccHHHHHhh
Q 016441 101 RKFDRIIFNFPHAGFYGK--ED-------NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-SNWNIKELAIG 170 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gk--ED-------~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnIe~LAa~ 170 (389)
..||+|+-+=|+.|. |. .+ ....+.....|=+..+.+|.++|++||.+.-+.|+=.|- |.-+|..+.++
T Consensus 182 ~~fD~ILvDaPCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 182 ETFDAILLDAPCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET 260 (470)
T ss_pred hhcCeEEEcCCCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 569999999999994 31 11 223455566666888999999999999999999986663 56677666555
Q ss_pred C
Q 016441 171 S 171 (389)
Q Consensus 171 a 171 (389)
.
T Consensus 261 ~ 261 (470)
T PRK11933 261 Y 261 (470)
T ss_pred C
Confidence 4
No 95
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=90.76 E-value=7 Score=37.18 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=72.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+..+||-||=|.=-.+.++++ .+ +..++|+-.|. . ..+ .|++|++. .|+... ++ +.. ...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~-~g-~~~v~giDis~-~-~l~---~A~~n~~~---~~~~~~--~~---~~~----~~~ 178 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAK-LG-AKKVLAVDIDP-Q-AVE---AARENAEL---NGVELN--VY---LPQ----GDL 178 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHH-cC-CCeEEEEECCH-H-HHH---HHHHHHHH---cCCCce--EE---Ecc----CCC
Confidence 4678999999998655555544 44 33577765542 2 222 25566542 333110 01 110 011
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS 179 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~ 179 (389)
.||.|+.|.. ...+..++..+..+|+++|.+.++-... ...-.+.+..++.||.+.+..
T Consensus 179 ~fD~Vvani~-----------------~~~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 179 KADVIVANIL-----------------ANPLLELAPDLARLLKPGGRLILSGILE--EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred CcCEEEEcCc-----------------HHHHHHHHHHHHHhcCCCcEEEEEECcH--hhHHHHHHHHHHCCCEEEEEE
Confidence 7999999852 1124567888999999999999873222 133456777888999887653
No 96
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=90.74 E-value=6.4 Score=38.78 Aligned_cols=137 Identities=20% Similarity=0.224 Sum_probs=85.5
Q ss_pred eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcce
Q 016441 26 QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDR 105 (389)
Q Consensus 26 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDr 105 (389)
+||=+|=|.=-=|.+||++.. ..+|+||=... +.+. -|+.|.+.+.-..+.++.+ |.-. .+++ +||.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~-~Al~----~A~~Na~~~~l~~~~~~~~-dlf~-----~~~~-~fDl 179 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISP-DALA----LARENAERNGLVRVLVVQS-DLFE-----PLRG-KFDL 179 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCH-HHHH----HHHHHHHHcCCccEEEEee-eccc-----ccCC-ceeE
Confidence 799999998888888888763 35888886654 3332 2566666544211233333 3222 1233 8999
Q ss_pred EEEcCCCCCCCCCccch---------HHHH--HhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCC-c
Q 016441 106 IIFNFPHAGFYGKEDNH---------LLIE--MHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSS-L 173 (389)
Q Consensus 106 IIFNFPH~G~~gkED~~---------r~Ir--~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aG-L 173 (389)
||||=|=+-....+... ..+- .-.++++.|+..+..+|+++|-+.+-+-.++. =.++++-.+.| +
T Consensus 180 IVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~---~~v~~~~~~~~~~ 256 (280)
T COG2890 180 IVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG---EAVKALFEDTGFF 256 (280)
T ss_pred EEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH---HHHHHHHHhcCCc
Confidence 99999998753001100 0110 13568899999999999999999988874431 14566666777 4
Q ss_pred EEEEE
Q 016441 174 SLIWC 178 (389)
Q Consensus 174 ~L~~~ 178 (389)
..+..
T Consensus 257 ~~v~~ 261 (280)
T COG2890 257 EIVET 261 (280)
T ss_pred eEEEE
Confidence 43433
No 97
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=90.72 E-value=0.96 Score=34.52 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=59.8
Q ss_pred EEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceEE
Q 016441 28 LLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRII 107 (389)
Q Consensus 28 LLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrII 107 (389)
|=+|=|.=.++..|++. .+.+++++-.+.. ..+ ..-+.++..++. ....|+++| .+....||.|+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~--~~~------~~~~~~~~~~~~-~~~~d~~~l----~~~~~sfD~v~ 65 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEE--MLE------QARKRLKNEGVS-FRQGDAEDL----PFPDNSFDVVF 65 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HH--HHH------HHHHHTTTSTEE-EEESBTTSS----SS-TT-EEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHH--HHH------HHHhcccccCch-heeehHHhC----ccccccccccc
Confidence 34677888889999887 3567777766532 221 122233344555 666778887 34568999999
Q ss_pred EcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441 108 FNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV 151 (389)
Q Consensus 108 FNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV 151 (389)
.+.=.-=. +=...+++.+..+|+|+|.+.|
T Consensus 66 ~~~~~~~~--------------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 66 SNSVLHHL--------------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EESHGGGS--------------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccceeec--------------cCHHHHHHHHHHHcCcCeEEeC
Confidence 87532211 1256889999999999998875
No 98
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=90.53 E-value=1.8 Score=44.42 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=79.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+..+||=+|=|-=.||+.||+.. ..++| .|..++..+ .|+.|++...-.++.++. -|+.++-........
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~---~~V~~--vE~~~~av~---~a~~n~~~~~~~nv~~~~-~d~~~~l~~~~~~~~ 361 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA---KSVVG--IEVVPESVE---KAQQNAELNGIANVEFLA-GTLETVLPKQPWAGQ 361 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC---CEEEE--EEcCHHHHH---HHHHHHHHhCCCceEEEe-CCHHHHHHHHHhcCC
Confidence 456789888888888888888753 34554 553333333 467777654433455544 466543111112345
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCc-ccHHHHHhhCCcEEEEEee
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSN-WNIKELAIGSSLSLIWCSE 180 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s-WnIe~LAa~aGL~L~~~~~ 180 (389)
.||.|++|=|..|. ..+++. .... +++++-|+|+ |+ |-+. =+++.| .+.|+.+....+
T Consensus 362 ~~D~vi~dPPr~G~------------~~~~l~----~l~~-l~~~~ivyvs-c~--p~tlard~~~l-~~~gy~~~~~~~ 420 (431)
T TIGR00479 362 IPDVLLLDPPRKGC------------AAEVLR----TIIE-LKPERIVYVS-CN--PATLARDLEFL-CKEGYGITWVQP 420 (431)
T ss_pred CCCEEEECcCCCCC------------CHHHHH----HHHh-cCCCEEEEEc-CC--HHHHHHHHHHH-HHCCeeEEEEEE
Confidence 69999999998873 112222 2222 6777766665 33 4221 133333 356899999999
Q ss_pred CCCCCCCC
Q 016441 181 FKIEDYPA 188 (389)
Q Consensus 181 F~~~~YPG 188 (389)
|| .||.
T Consensus 421 ~D--mFP~ 426 (431)
T TIGR00479 421 VD--MFPH 426 (431)
T ss_pred ec--cCCC
Confidence 98 6774
No 99
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=90.44 E-value=0.64 Score=39.28 Aligned_cols=120 Identities=21% Similarity=0.258 Sum_probs=78.8
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
..+..+||=||=|.=.|+..|++. +..++++-.. +.+.++ ..-..+.+. +.. .....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~--~~~~~~------------~~~~~~~~~--~~~----~~~~~ 76 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDIS--PQMIEK------------RNVVFDNFD--AQD----PPFPD 76 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESS--HHHHHH------------TTSEEEEEE--CHT----HHCHS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECC--HHHHhh------------hhhhhhhhh--hhh----hhccc
Confidence 567789999999999999999664 3366655443 334333 111122221 111 11245
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC---------------------CC
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV---------------------PF 159 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~---------------------PY 159 (389)
+.||.|+.+ ++=- -.. + ...+++....+|+|+|.+.++.-... .|
T Consensus 77 ~~fD~i~~~--~~l~-~~~--------d---~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (161)
T PF13489_consen 77 GSFDLIICN--DVLE-HLP--------D---PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFF 142 (161)
T ss_dssp SSEEEEEEE--SSGG-GSS--------H---HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEB
T ss_pred cchhhHhhH--HHHh-hcc--------c---HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccC
Confidence 789999998 3321 111 1 56889999999999999999876531 14
Q ss_pred CcccHHHHHhhCCcEEEE
Q 016441 160 SNWNIKELAIGSSLSLIW 177 (389)
Q Consensus 160 ~sWnIe~LAa~aGL~L~~ 177 (389)
+.+.+..+++++||.+++
T Consensus 143 ~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 143 SPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp BHHHHHHHHHHTTEEEEE
T ss_pred CHHHHHHHHHHCCCEEEE
Confidence 568888999999998875
No 100
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.09 E-value=3.2 Score=38.63 Aligned_cols=104 Identities=18% Similarity=0.269 Sum_probs=64.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+.++||=||-|.=.++..|++..+....+ |+.|-.+++.+ .++.|++.+.-.++++.. -|+.... ....
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V--~~vE~~~~~~~---~a~~~l~~~g~~~v~~~~-gd~~~~~----~~~~ 144 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKV--VTIERIPELAE---KAKKTLKKLGYDNVEVIV-GDGTLGY----EENA 144 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEE--EEEeCCHHHHH---HHHHHHHHcCCCCeEEEE-CCcccCC----CcCC
Confidence 467899999999999999998876543344 45554455544 266676654322344333 4554421 1346
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT 155 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 155 (389)
.||+|+.+.- .++ +... ..+.|++||.+.+.+.+
T Consensus 145 ~fD~I~~~~~------~~~----------~~~~----l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 145 PYDRIYVTAA------GPD----------IPKP----LIEQLKDGGIMVIPVGS 178 (212)
T ss_pred CcCEEEECCC------ccc----------chHH----HHHhhCCCcEEEEEEcC
Confidence 8999998631 111 1112 23479999999997743
No 101
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=89.86 E-value=6.4 Score=39.34 Aligned_cols=132 Identities=16% Similarity=0.213 Sum_probs=77.4
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeccccCCCCCCCCcCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-KLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+.+||=||=|+=.|+..+++. + +..|+ ..|....+..+.. + .-..+. ...+.++ ..|+..+.. ..
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~-g-~~~V~--GiD~S~~~l~q~~-a--~~~~~~~~~~i~~~-~~d~e~lp~-----~~ 188 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGA-G-AKLVV--GIDPSQLFLCQFE-A--VRKLLGNDQRAHLL-PLGIEQLPA-----LK 188 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHc-C-CCEEE--EEcCCHHHHHHHH-H--HHHhcCCCCCeEEE-eCCHHHCCC-----cC
Confidence 4678999998888888888876 3 23344 4664333332211 1 111111 1234443 346666643 46
Q ss_pred CcceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe--cCCC------C---CC----cc--
Q 016441 102 KFDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH--KTTV------P---FS----NW-- 162 (389)
Q Consensus 102 ~FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL--k~g~------P---Y~----sW-- 162 (389)
.||.|+.+ +-|. .=...+|+.+..+|++||++.++. .++. | |. .|
T Consensus 189 ~FD~V~s~~vl~H~----------------~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~l 252 (322)
T PRK15068 189 AFDTVFSMGVLYHR----------------RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFI 252 (322)
T ss_pred CcCEEEECChhhcc----------------CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeC
Confidence 79999974 2222 113468899999999999998763 1221 2 21 12
Q ss_pred ----cHHHHHhhCCcEEEEEeeCCC
Q 016441 163 ----NIKELAIGSSLSLIWCSEFKI 183 (389)
Q Consensus 163 ----nIe~LAa~aGL~L~~~~~F~~ 183 (389)
.++.+.+++||..++.+....
T Consensus 253 ps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 253 PSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred CCHHHHHHHHHHcCCceEEEEeCCC
Confidence 246677788888887765543
No 102
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=89.78 E-value=0.82 Score=43.28 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=70.7
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
-.++++||-||-|-==+|..|+...+....++ +.|..++|.+ .|+.|++.+.-.++.++++ |+..-- ...
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv--~vE~~~~l~~---~A~~~l~~~~~~nv~~~~g-dg~~g~----~~~ 139 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVV--SVERDPELAE---RARRNLARLGIDNVEVVVG-DGSEGW----PEE 139 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEE--EEESBHHHHH---HHHHHHHHHTTHSEEEEES--GGGTT----GGG
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEE--EECccHHHHH---HHHHHHHHhccCceeEEEc-chhhcc----ccC
Confidence 45789999999998888888888776432233 6676677765 4889999988778888887 554421 134
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV 157 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 157 (389)
.+||+|+.+.--.. + -. .+ .+.|++||.+.+-+.++.
T Consensus 140 apfD~I~v~~a~~~----------i--p~----~l----~~qL~~gGrLV~pi~~~~ 176 (209)
T PF01135_consen 140 APFDRIIVTAAVPE----------I--PE----AL----LEQLKPGGRLVAPIGQGG 176 (209)
T ss_dssp -SEEEEEESSBBSS--------------H----HH----HHTEEEEEEEEEEESSSS
T ss_pred CCcCEEEEeeccch----------H--HH----HH----HHhcCCCcEEEEEEccCC
Confidence 68999999853321 1 11 22 245899999999998743
No 103
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=89.37 E-value=6.3 Score=40.86 Aligned_cols=135 Identities=16% Similarity=0.174 Sum_probs=79.5
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.++.+||=+|=|.=.||++||+.. ..++| .|..+++.+ .|+.|++...-.++.+ ..-|+.+.-....+...
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~---~~V~g--vD~s~~al~---~A~~n~~~~~~~~v~~-~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA---AEVVG--VEGVEAMVE---RARENARRNGLDNVTF-YHANLEEDFTDQPWALG 366 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC---CEEEE--EeCCHHHHH---HHHHHHHHcCCCceEE-EEeChHHhhhhhhhhcC
Confidence 356789888877778888888763 35655 554344443 3667776543223433 34466542211112345
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeC
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEF 181 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F 181 (389)
.||.|+.|=|-.|. . + .+ +.... +++++-|+|+-.-.. -.=++..|. +.||.+.+..+|
T Consensus 367 ~fD~Vi~dPPr~g~-~--~----------~~----~~l~~-~~~~~ivyvSCnp~t--laRDl~~L~-~~gY~l~~i~~~ 425 (443)
T PRK13168 367 GFDKVLLDPPRAGA-A--E----------VM----QALAK-LGPKRIVYVSCNPAT--LARDAGVLV-EAGYRLKRAGML 425 (443)
T ss_pred CCCEEEECcCCcCh-H--H----------HH----HHHHh-cCCCeEEEEEeChHH--hhccHHHHh-hCCcEEEEEEEe
Confidence 79999999999984 1 1 11 11111 477777777753221 112444443 578999999999
Q ss_pred CCCCCCC
Q 016441 182 KIEDYPA 188 (389)
Q Consensus 182 ~~~~YPG 188 (389)
| .||.
T Consensus 426 D--mFP~ 430 (443)
T PRK13168 426 D--MFPH 430 (443)
T ss_pred c--cCCC
Confidence 8 6774
No 104
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=89.28 E-value=4.6 Score=37.13 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=73.3
Q ss_pred ccccC-CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCC
Q 016441 16 KWIKH-YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTME 93 (389)
Q Consensus 16 K~~~~-Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~ 93 (389)
+|+.. -.+..+||=||=|.=.++..|++. +..|++.-.+ +++.+ .|.+++....... .|- .-.|+..+.
T Consensus 47 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s--~~~i~---~a~~~~~~~~~~~-~i~~~~~d~~~~~ 117 (219)
T TIGR02021 47 DWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDIS--EQMVQ---MARNRAQGRDVAG-NVEFEVNDLLSLC 117 (219)
T ss_pred HHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECC--HHHHH---HHHHHHHhcCCCC-ceEEEECChhhCC
Confidence 44542 345789999999988898888864 2356555443 33332 1333433221101 222 234555442
Q ss_pred CCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC----------------
Q 016441 94 LHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV---------------- 157 (389)
Q Consensus 94 ~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~---------------- 157 (389)
..||.|+..+.-.-. .. .-+...++.+..+++++ +.|+.....
T Consensus 118 -------~~fD~ii~~~~l~~~-~~-----------~~~~~~l~~i~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~ 176 (219)
T TIGR02021 118 -------GEFDIVVCMDVLIHY-PA-----------SDMAKALGHLASLTKER--VIFTFAPKTAWLAFLKMIGELFPGS 176 (219)
T ss_pred -------CCcCEEEEhhHHHhC-CH-----------HHHHHHHHHHHHHhCCC--EEEEECCCchHHHHHHHHHhhCcCc
Confidence 579999986542211 00 11334455555556533 444442211
Q ss_pred -------CCCcccHHHHHhhCCcEEEEEeeCC
Q 016441 158 -------PFSNWNIKELAIGSSLSLIWCSEFK 182 (389)
Q Consensus 158 -------PY~sWnIe~LAa~aGL~L~~~~~F~ 182 (389)
++....++++++.+|+.++.+..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 177 SRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred ccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 1234567888888898888775443
No 105
>PRK00536 speE spermidine synthase; Provisional
Probab=89.10 E-value=2.7 Score=41.41 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=71.0
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhh-hhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKY-KRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY-~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
-+|||++|=||--=++=+.|+ +.+|+---.|.+ -++.+|| |... +.+.+--++|+..+. + ...+
T Consensus 73 pk~VLIiGGGDGg~~REvLkh---~~~v~mVeID~~Vv~~~k~~lP~~~---~~~~DpRv~l~~~~~-----~---~~~~ 138 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY---DTHVDFVQADEKILDSFISFFPHFH---EVKNNKNFTHAKQLL-----D---LDIK 138 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc---CCeeEEEECCHHHHHHHHHHCHHHH---HhhcCCCEEEeehhh-----h---ccCC
Confidence 468999999997666666654 237777777753 3455665 5432 357777788886321 1 1236
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC-C---cccHHHHHhh
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF-S---NWNIKELAIG 170 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~---sWnIe~LAa~ 170 (389)
+||.||-+=. + . ..|++.+++.|+++|-+. |-.+ .|+ . -|.|.+--++
T Consensus 139 ~fDVIIvDs~---~-~---------------~~fy~~~~~~L~~~Gi~v-~Qs~-sp~~~~~~~~~i~~~l~~ 190 (262)
T PRK00536 139 KYDLIICLQE---P-D---------------IHKIDGLKRMLKEDGVFI-SVAK-HPLLEHVSMQNALKNMGD 190 (262)
T ss_pred cCCEEEEcCC---C-C---------------hHHHHHHHHhcCCCcEEE-ECCC-CcccCHHHHHHHHHHHHh
Confidence 7999999821 1 0 389999999999988654 3333 343 2 2555554443
No 106
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=89.09 E-value=3.6 Score=40.80 Aligned_cols=106 Identities=23% Similarity=0.345 Sum_probs=77.0
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeccccCCCCCCCCc
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG--TCILHGVDATTMELHPDL 98 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G--v~VlfgVDATkL~~~~~L 98 (389)
-+...+||=.|=|.=+.|.+||...+..-.| |+||-.++-.+ .|.+|+++. ..+ +++.. -|+++-..
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v--~tyE~r~d~~k---~A~~Nl~~~-~l~d~v~~~~-~Dv~~~~~---- 160 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHV--TTYEIREDFAK---TARENLSEF-GLGDRVTLKL-GDVREGID---- 160 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceE--EEEEecHHHHH---HHHHHHHHh-ccccceEEEe-cccccccc----
Confidence 4668899999999999999999988754455 46776665544 599999886 232 23222 45555332
Q ss_pred CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441 99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV 157 (389)
Q Consensus 99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 157 (389)
...||.|+-+-|-.= ++...+..+|+++|.+.+=+-+-+
T Consensus 161 -~~~vDav~LDmp~PW-------------------~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 161 -EEDVDAVFLDLPDPW-------------------NVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred -ccccCEEEEcCCChH-------------------HHHHHHHHHhCCCcEEEEEcCCHH
Confidence 248999999999763 678889999999998887665543
No 107
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=89.08 E-value=4.1 Score=36.71 Aligned_cols=102 Identities=21% Similarity=0.270 Sum_probs=64.0
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF 103 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F 103 (389)
..+||=||=|.=+++..|++.. ....++++-.+ .+..+. +..++. ..+.+ ...|++.+. +....|
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~--~~~~~~---~~~~~~----~~~~~-~~~d~~~~~----~~~~~f 99 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDIS--AGMLAQ---AKTKLS----ENVQF-ICGDAEKLP----LEDSSF 99 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeCh--HHHHHH---HHHhcC----CCCeE-EecchhhCC----CCCCce
Confidence 3689999999989999998875 33445555543 332221 222211 13333 335666543 234679
Q ss_pred ceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 104 DRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 104 DrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
|.|+.++..--. .| ...++..+..+|+++|.+.++..
T Consensus 100 D~vi~~~~l~~~---~~-----------~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 100 DLIVSNLALQWC---DD-----------LSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred eEEEEhhhhhhc---cC-----------HHHHHHHHHHHcCCCcEEEEEeC
Confidence 999998753221 11 23688999999999999998754
No 108
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=88.84 E-value=4.4 Score=41.21 Aligned_cols=121 Identities=22% Similarity=0.288 Sum_probs=80.9
Q ss_pred eEEEEecCChhHHHHHHHHhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCC-CEEEec-cccCCCCCCCCcCCCC
Q 016441 26 QILLVGEGDFSFSLCLALAFGSASNICASSLD-SYDDVIQKYKRAKSNLDNLKKLG-TCILHG-VDATTMELHPDLRTRK 102 (389)
Q Consensus 26 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD-SeeeL~~KY~~A~~Ni~~Lr~~G-v~Vlfg-VDATkL~~~~~Lk~~~ 102 (389)
.||=||=|.=--|++|+..++ +.++|.-| |...+. =|.+|.+.|+-.| +.|.|. .--.....++ +..++
T Consensus 151 ~ildlgtGSGaIslsll~~L~---~~~v~AiD~S~~Ai~----La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l~~~~ 222 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLP---QCTVTAIDVSKAAIK----LAKENAQRLKLSGRIEVIHNIMESDASDEHP-LLEGK 222 (328)
T ss_pred eEEEecCCccHHHHHHHhcCC---CceEEEEeccHHHHH----HHHHHHHHHhhcCceEEEecccccccccccc-cccCc
Confidence 799999998878888877664 56666666 333332 3789999999988 566643 2222233333 45688
Q ss_pred cceEEEcCCCCCCCCCccchHHHHH------------hHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEM------------HRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
.|.||-|=|=+-..-.++-.-.|+. --+.+.+|+.-|..+|+++|.+.+.+.
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 9999999998863111111111221 134567899999999999999999987
No 109
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=88.54 E-value=4.2 Score=43.19 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=77.5
Q ss_pred HHHHHhCC--CEEEeccccCCCCCCCCcCCCCcceEEEcCCCCC--CCCCcc------chHHHHHhHHHHHHHHHhhHhc
Q 016441 73 LDNLKKLG--TCILHGVDATTMELHPDLRTRKFDRIIFNFPHAG--FYGKED------NHLLIEMHRSLVRDFFRNSSGM 142 (389)
Q Consensus 73 i~~Lr~~G--v~VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G--~~gkED------~~r~Ir~nr~LL~~FF~SA~~l 142 (389)
..-|.++| -+|+-.-|+..+...- + ...||||.-+=|+.| ..+|.. ....|..+..|=+..|.+|.++
T Consensus 283 ~~n~~rlGv~ntiv~n~D~~ef~~~~-~-~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~l 360 (460)
T KOG1122|consen 283 KANLHRLGVTNTIVSNYDGREFPEKE-F-PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDL 360 (460)
T ss_pred HHHHHHhCCCceEEEccCcccccccc-c-CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhh
Confidence 33444555 3666677777654322 2 238999999999999 322221 2335667778888889999999
Q ss_pred ccCCCeEEEEecCCCC-CCcccHHHHHhhC-CcEEEEEeeCCCC
Q 016441 143 LRDGGEVHVSHKTTVP-FSNWNIKELAIGS-SLSLIWCSEFKIE 184 (389)
Q Consensus 143 L~~~GeIHVTLk~g~P-Y~sWnIe~LAa~a-GL~L~~~~~F~~~ 184 (389)
+++||-|.-+.|+-.| -+.|.|..+-++. .++|....++-..
T Consensus 361 v~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~iG~ 404 (460)
T KOG1122|consen 361 VKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDIGG 404 (460)
T ss_pred ccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccCCC
Confidence 9999999999998765 4789888866555 8888877665433
No 110
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=88.51 E-value=4.6 Score=39.20 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=61.7
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEe-ccccCCCCCCCCcCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILH-GVDATTMELHPDLRTR 101 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vlf-gVDATkL~~~~~Lk~~ 101 (389)
+..+||=||=|.=.++..|++. +..|+|. |..++..+. ++++.+. .|+.|.. ..|+.... + ..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~av--D~s~~ai~~---~~~~~~~---~~l~v~~~~~D~~~~~----~-~~ 183 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAV--DINQQSLEN---LQEIAEK---ENLNIRTGLYDINSAS----I-QE 183 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEE--ECCHHHHHH---HHHHHHH---cCCceEEEEechhccc----c-cC
Confidence 4458999999988888888874 3456554 644443332 3444432 3332221 22443321 2 46
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV 151 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV 151 (389)
.||.|+-++-.-- .+.+.+..+++.+..+|+++|.+.+
T Consensus 184 ~fD~I~~~~vl~~------------l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 184 EYDFILSTVVLMF------------LNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CccEEEEcchhhh------------CCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 7999998764211 1233466889999999999998554
No 111
>PLN02823 spermine synthase
Probab=87.40 E-value=1.7 Score=44.03 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=69.2
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.-++||++|=|+-+-++-++++. +...|++--+|.. -++.++|-.. +-..++...++|+.+ ||.+.-+. ..+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~--~~~~~~dprv~v~~~-Da~~~L~~---~~~ 175 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTV--NREAFCDKRLELIIN-DARAELEK---RDE 175 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccc--ccccccCCceEEEEC-hhHHHHhh---CCC
Confidence 34689999999999988887753 3467888888843 2333444211 112244555666654 44442111 236
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHH-hhHhcccCCCeEEE
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFR-NSSGMLRDGGEVHV 151 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~-SA~~lL~~~GeIHV 151 (389)
+||.||.+.+..-..|. ..+-.-..||+ .++..|+++|-+.+
T Consensus 176 ~yDvIi~D~~dp~~~~~--------~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 176 KFDVIIGDLADPVEGGP--------CYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred CccEEEecCCCccccCc--------chhhccHHHHHHHHHHhcCCCcEEEE
Confidence 79999999764210011 11122358998 89999999997654
No 112
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=86.81 E-value=10 Score=37.05 Aligned_cols=101 Identities=19% Similarity=0.303 Sum_probs=62.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCcCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDLRTR 101 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~Lk~~ 101 (389)
++.+||=||=|.=..+.++++ +| +..++|.-.|.. .+ + .+++|++.- .....+. ...| +. .....
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~-~g-~~~V~avDid~~-al-~---~a~~n~~~n-~~~~~~~~~~~~---~~---~~~~~ 224 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALK-LG-AAKVVGIDIDPL-AV-E---SARKNAELN-QVSDRLQVKLIY---LE---QPIEG 224 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHH-cC-CCeEEEEECCHH-HH-H---HHHHHHHHc-CCCcceEEEecc---cc---cccCC
Confidence 467999999999777777765 44 457888776643 22 1 255565431 1111111 1112 11 11235
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
+||.|+.|.. . .-+..++..+..+|+++|.+.++-.
T Consensus 225 ~fDlVvan~~--~---------------~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 225 KADVIVANIL--A---------------EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred CceEEEEecC--H---------------HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8999999963 1 1135678889999999999988743
No 113
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=86.10 E-value=0.24 Score=49.24 Aligned_cols=155 Identities=23% Similarity=0.282 Sum_probs=75.5
Q ss_pred hhccccccCCCCCCeEEEEecCChhHHHHH--HHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHH--HHhCCCEEEecc
Q 016441 12 EKEEKWIKHYSSNHQILLVGEGDFSFSLCL--ALAFGSASNICASSLDSYDDVIQKYKRAKSNLDN--LKKLGTCILHGV 87 (389)
Q Consensus 12 ~~~~K~~~~Yss~~rILLVGEGDFSFSlSL--a~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~--Lr~~Gv~VlfgV 87 (389)
-+..+|+..++.+.+||=+ ||++-+. +-+.+.+.. +|+.|.....++ .+++|... +....++.+ .-
T Consensus 112 R~nR~~v~~~~~gkrvLnl----FsYTGgfsv~Aa~gGA~~--v~~VD~S~~al~---~a~~N~~lNg~~~~~~~~~-~~ 181 (286)
T PF10672_consen 112 RENRKWVRKYAKGKRVLNL----FSYTGGFSVAAAAGGAKE--VVSVDSSKRALE---WAKENAALNGLDLDRHRFI-QG 181 (286)
T ss_dssp HHHHHHHHHHCTTCEEEEE----T-TTTHHHHHHHHTTESE--EEEEES-HHHHH---HHHHHHHHTT-CCTCEEEE-ES
T ss_pred HhhHHHHHHHcCCCceEEe----cCCCCHHHHHHHHCCCCE--EEEEeCCHHHHH---HHHHHHHHcCCCccceEEE-ec
Confidence 4456899999999999965 6654333 222333333 457786555554 26666542 221222222 33
Q ss_pred ccCC-CCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHH
Q 016441 88 DATT-MELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKE 166 (389)
Q Consensus 88 DATk-L~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~ 166 (389)
|+-+ |.. . -+..+||.||.+=|=.. +++.+. .+..++| +..|.++|+++|.+.++.|... .+.=.+.+
T Consensus 182 Dvf~~l~~-~-~~~~~fD~IIlDPPsF~-k~~~~~---~~~y~~L----~~~a~~ll~~gG~l~~~scs~~-i~~~~l~~ 250 (286)
T PF10672_consen 182 DVFKFLKR-L-KKGGRFDLIILDPPSFA-KSKFDL---ERDYKKL----LRRAMKLLKPGGLLLTCSCSHH-ISPDFLLE 250 (286)
T ss_dssp -HHHHHHH-H-HHTT-EEEEEE--SSEE-SSTCEH---HHHHHHH----HHHHHHTEEEEEEEEEEE--TT-S-HHHHHH
T ss_pred CHHHHHHH-H-hcCCCCCEEEECCCCCC-CCHHHH---HHHHHHH----HHHHHHhcCCCCEEEEEcCCcc-cCHHHHHH
Confidence 5543 211 0 13468999999999776 455432 2333444 5678899999999988888653 22112333
Q ss_pred HHhhC--CcEEEEEeeCCCCCCCC
Q 016441 167 LAIGS--SLSLIWCSEFKIEDYPA 188 (389)
Q Consensus 167 LAa~a--GL~L~~~~~F~~~~YPG 188 (389)
+.+++ .+.+++. --.+++||.
T Consensus 251 ~~~~~a~~~~~~~~-~~~p~df~~ 273 (286)
T PF10672_consen 251 AVAEAAREVEFIER-LGQPPDFPD 273 (286)
T ss_dssp HHHHHHHHCEEEEE-EE-------
T ss_pred HHHHhCccceEeee-ecccccccc
Confidence 33332 3334332 236777885
No 114
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=85.36 E-value=3.8 Score=40.01 Aligned_cols=131 Identities=17% Similarity=0.272 Sum_probs=80.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.++.+||=.|-|.=|+|.+|++..+..-.| .|||-.++-.+ .|.+|++...-.+...++--|+.+-.-...+ ..
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v--~t~E~~~~~~~---~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~~ 112 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHV--YTYEFREDRAE---KARKNFERHGLDDNVTVHHRDVCEEGFDEEL-ES 112 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEE--EEEESSHHHHH---HHHHHHHHTTCCTTEEEEES-GGCG--STT--TT
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEE--EccccCHHHHH---HHHHHHHHcCCCCCceeEecceecccccccc-cC
Confidence 468899999999999999999998743344 46776665544 4888877754434445556676642221112 36
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcc-cCCCeEEEEecCCCCCCcccHHH---HHhhCCcEEEE
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGML-RDGGEVHVSHKTTVPFSNWNIKE---LAIGSSLSLIW 177 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL-~~~GeIHVTLk~g~PY~sWnIe~---LAa~aGL~L~~ 177 (389)
.+|.|+-+-|..= ....+|.+.| +++|.|.+=.-.=+ |+.+ ..++.||..++
T Consensus 113 ~~DavfLDlp~Pw-------------------~~i~~~~~~L~~~gG~i~~fsP~ie-----Qv~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 113 DFDAVFLDLPDPW-------------------EAIPHAKRALKKPGGRICCFSPCIE-----QVQKTVEALREHGFTDIE 168 (247)
T ss_dssp SEEEEEEESSSGG-------------------GGHHHHHHHE-EEEEEEEEEESSHH-----HHHHHHHHHHHTTEEEEE
T ss_pred cccEEEEeCCCHH-------------------HHHHHHHHHHhcCCceEEEECCCHH-----HHHHHHHHHHHCCCeeeE
Confidence 7999999999874 2355677888 78887765543222 3333 33346887766
Q ss_pred EeeCC
Q 016441 178 CSEFK 182 (389)
Q Consensus 178 ~~~F~ 182 (389)
.+.-.
T Consensus 169 ~~Evl 173 (247)
T PF08704_consen 169 TVEVL 173 (247)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55443
No 115
>PRK06940 short chain dehydrogenase; Provisional
Probab=84.81 E-value=6.2 Score=37.39 Aligned_cols=77 Identities=12% Similarity=0.254 Sum_probs=48.6
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc-----
Q 016441 25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL----- 98 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L----- 98 (389)
+.+|+.|= . .-.+++|+.+..+.+|++++.+. +. .++..++|+..|.++ .+.+|.++......+
T Consensus 3 k~~lItGa-~-gIG~~la~~l~~G~~Vv~~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 3 EVVVVIGA-G-GIGQAIARRVGAGKKVLLADYNE-EN-------LEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CEEEEECC-C-hHHHHHHHHHhCCCEEEEEeCCH-HH-------HHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 45777784 4 57777777776678899987753 22 223345566667654 577888876432111
Q ss_pred CCCCcceEEEcCC
Q 016441 99 RTRKFDRIIFNFP 111 (389)
Q Consensus 99 k~~~FDrIIFNFP 111 (389)
...+.|.||.|--
T Consensus 73 ~~g~id~li~nAG 85 (275)
T PRK06940 73 TLGPVTGLVHTAG 85 (275)
T ss_pred hcCCCCEEEECCC
Confidence 1256899998853
No 116
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=84.77 E-value=13 Score=33.78 Aligned_cols=135 Identities=19% Similarity=0.240 Sum_probs=72.1
Q ss_pred ccccC--CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EEEe-ccccC
Q 016441 16 KWIKH--YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT--CILH-GVDAT 90 (389)
Q Consensus 16 K~~~~--Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv--~Vlf-gVDAT 90 (389)
.|+.. -.+..+||=||-|.=.|+..|++.. ..++++-. ...+.+ .|+++... .+. .|-+ ..|
T Consensus 54 ~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~--s~~~i~---~a~~~~~~---~~~~~~i~~~~~d-- 120 (230)
T PRK07580 54 SWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDI--SPQMVE---EARERAPE---AGLAGNITFEVGD-- 120 (230)
T ss_pred HHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEEC--CHHHHH---HHHHHHHh---cCCccCcEEEEcC--
Confidence 34444 2456789999999888899998752 34554444 233332 13334332 222 2222 233
Q ss_pred CCCCCCCcCCCCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC-----------
Q 016441 91 TMELHPDLRTRKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV----------- 157 (389)
Q Consensus 91 kL~~~~~Lk~~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----------- 157 (389)
+.. ....||.|+.+.. |... ++ +...++.+..++. |.+.|+.....
T Consensus 121 -~~~----~~~~fD~v~~~~~l~~~~~---~~-----------~~~~l~~l~~~~~--~~~~i~~~~~~~~~~~~~~l~~ 179 (230)
T PRK07580 121 -LES----LLGRFDTVVCLDVLIHYPQ---ED-----------AARMLAHLASLTR--GSLIFTFAPYTPLLALLHWIGG 179 (230)
T ss_pred -chh----ccCCcCEEEEcchhhcCCH---HH-----------HHHHHHHHHhhcC--CeEEEEECCccHHHHHHHHhcc
Confidence 221 1367999998754 3221 11 2233333444443 33444432211
Q ss_pred ------------CCCcccHHHHHhhCCcEEEEEeeCCCC
Q 016441 158 ------------PFSNWNIKELAIGSSLSLIWCSEFKIE 184 (389)
Q Consensus 158 ------------PY~sWnIe~LAa~aGL~L~~~~~F~~~ 184 (389)
.++.-++.++.+.+||.+.+..++...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 180 LFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred ccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence 123346778899999999998887644
No 117
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=84.54 E-value=8.4 Score=39.78 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=65.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
+..+||=||=|.=.++..|++.. ..++| .|-..++.++ + .+.............|+.+.. ..+....
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~g--iD~s~~~l~~---a---~~~~~~~~~i~~~~~d~~~~~--~~~~~~~ 103 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---GQVIA--LDFIESVIKK---N---ESINGHYKNVKFMCADVTSPD--LNISDGS 103 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---CEEEE--EeCCHHHHHH---H---HHHhccCCceEEEEecccccc--cCCCCCC
Confidence 45689999999999999999863 35654 4533333332 1 111111112223445665432 2244578
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
||.|+.+++..=. ...-+..+++.+..+|+++|.|.+.
T Consensus 104 fD~I~~~~~l~~l------------~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 104 VDLIFSNWLLMYL------------SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred EEEEehhhhHHhC------------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9999999874321 2223578899999999999998775
No 118
>PRK06202 hypothetical protein; Provisional
Probab=83.53 E-value=24 Score=32.82 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=46.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
.+..+||=||=|.=.++..|++... .+.+...|..|-..++.+. |+.+. ...++++.. +|+..+.. ..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~---a~~~~---~~~~~~~~~-~~~~~l~~----~~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAF---ARANP---RRPGVTFRQ-AVSDELVA----EG 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH---HHhcc---ccCCCeEEE-Eecccccc----cC
Confidence 5667899888777667777776431 1233445555644444432 32222 234555544 45655543 34
Q ss_pred CCcceEEEcCC
Q 016441 101 RKFDRIIFNFP 111 (389)
Q Consensus 101 ~~FDrIIFNFP 111 (389)
..||.|+.|+-
T Consensus 128 ~~fD~V~~~~~ 138 (232)
T PRK06202 128 ERFDVVTSNHF 138 (232)
T ss_pred CCccEEEECCe
Confidence 68999999975
No 119
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=82.10 E-value=13 Score=34.85 Aligned_cols=102 Identities=19% Similarity=0.167 Sum_probs=64.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
...+||=+|=|.=.++..|++. +..+++.-+. .++.+. +..+.. ... ....|+..+. +....
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s--~~~l~~---a~~~~~-----~~~-~~~~d~~~~~----~~~~~ 103 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLS--PPMLAQ---ARQKDA-----ADH-YLAGDIESLP----LATAT 103 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECC--HHHHHH---HHhhCC-----CCC-EEEcCcccCc----CCCCc
Confidence 4568999998887788888763 3456665433 333321 222211 112 2345666543 34568
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT 156 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 156 (389)
||.|+-|++.--. .| +..++..+..+|+++|.+.++....
T Consensus 104 fD~V~s~~~l~~~---~d-----------~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 104 FDLAWSNLAVQWC---GN-----------LSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred EEEEEECchhhhc---CC-----------HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9999999875321 22 3467888999999999999986543
No 120
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=81.89 E-value=11 Score=35.54 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=67.2
Q ss_pred cccCCCCCCeEEEEecCChhHHHH-HHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441 17 WIKHYSSNHQILLVGEGDFSFSLC-LALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH 95 (389)
Q Consensus 17 ~~~~Yss~~rILLVGEGDFSFSlS-La~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~ 95 (389)
|+.....+.+||=+|=|.=+|++. |++. +..+++ .|...+..+ .++.|++.+.-..++++. -|+.+.-..
T Consensus 47 ~l~~~~~~~~vLDl~~GsG~l~l~~lsr~---a~~V~~--vE~~~~a~~---~a~~Nl~~~~~~~v~~~~-~D~~~~l~~ 117 (199)
T PRK10909 47 WLAPVIVDARCLDCFAGSGALGLEALSRY---AAGATL--LEMDRAVAQ---QLIKNLATLKAGNARVVN-TNALSFLAQ 117 (199)
T ss_pred HHhhhcCCCEEEEcCCCccHHHHHHHHcC---CCEEEE--EECCHHHHH---HHHHHHHHhCCCcEEEEE-chHHHHHhh
Confidence 444445567898887777677764 4442 345554 454444433 467787776533455543 466542111
Q ss_pred CCcCCCCcceEEEcCC-CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441 96 PDLRTRKFDRIIFNFP-HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT 156 (389)
Q Consensus 96 ~~Lk~~~FDrIIFNFP-H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 156 (389)
....||.|++|=| +.|. ..+++.... ...+|.++|-|+|.+-..
T Consensus 118 ---~~~~fDlV~~DPPy~~g~------------~~~~l~~l~--~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 118 ---PGTPHNVVFVDPPFRKGL------------LEETINLLE--DNGWLADEALIYVESEVE 162 (199)
T ss_pred ---cCCCceEEEECCCCCCCh------------HHHHHHHHH--HCCCcCCCcEEEEEecCC
Confidence 1346999999999 5552 233333332 246788999999987543
No 121
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=81.61 E-value=4.4 Score=42.30 Aligned_cols=162 Identities=22% Similarity=0.205 Sum_probs=90.5
Q ss_pred hhccccccCCCCCCeEEEEecCChhHHHHH--HHHhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCC-CE-EEec
Q 016441 12 EKEEKWIKHYSSNHQILLVGEGDFSFSLCL--ALAFGSASNICASSLD-SYDDVIQKYKRAKSNLDNLKKLG-TC-ILHG 86 (389)
Q Consensus 12 ~~~~K~~~~Yss~~rILLVGEGDFSFSlSL--a~~~gs~~nLvATSlD-SeeeL~~KY~~A~~Ni~~Lr~~G-v~-Vlfg 86 (389)
-+..+|+..+..++++|=+ ||++-+. +-+.+.+..+ |+-| |...|. -|++|++ |.... .+ -+..
T Consensus 206 R~~R~~l~~~~~GkrvLNl----FsYTGgfSv~Aa~gGA~~v--t~VD~S~~al~----~a~~N~~-LNg~~~~~~~~i~ 274 (393)
T COG1092 206 RDNRRALGELAAGKRVLNL----FSYTGGFSVHAALGGASEV--TSVDLSKRALE----WARENAE-LNGLDGDRHRFIV 274 (393)
T ss_pred HHHHHHHhhhccCCeEEEe----cccCcHHHHHHHhcCCCce--EEEeccHHHHH----HHHHHHH-hcCCCccceeeeh
Confidence 3456788888889999866 5554333 2233333333 4455 333332 3666654 22111 11 1122
Q ss_pred cccCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcc----
Q 016441 87 VDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNW---- 162 (389)
Q Consensus 87 VDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW---- 162 (389)
-||=+.-+...-++.+||.||.+=|=.+. ++....+..+.+..|+. -|.++|+++|.+.++.|... ...=
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r-~k~~~~~~~rdy~~l~~----~~~~iL~pgG~l~~~s~~~~-~~~~~f~~ 348 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFAR-SKKQEFSAQRDYKDLND----LALRLLAPGGTLVTSSCSRH-FSSDLFLE 348 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCccccc-CcccchhHHHHHHHHHH----HHHHHcCCCCEEEEEecCCc-cCHHHHHH
Confidence 23332222222245799999999999984 66544444455555544 48899999999999988763 3322
Q ss_pred cHHHHHhhCCcEEEEE-eeCCCCCCCCCc
Q 016441 163 NIKELAIGSSLSLIWC-SEFKIEDYPAYN 190 (389)
Q Consensus 163 nIe~LAa~aGL~L~~~-~~F~~~~YPGY~ 190 (389)
.|..-|...+...... ..-.+.|+|-..
T Consensus 349 ~i~~a~~~~~~~~~~~~~~~~~~D~p~~~ 377 (393)
T COG1092 349 IIARAAAAAGRRAQEIEGEGQPPDHPRNA 377 (393)
T ss_pred HHHHHHHhcCCcEEEeeccCCCCCccccc
Confidence 2334455555544443 566677777443
No 122
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=81.17 E-value=4.5 Score=40.28 Aligned_cols=110 Identities=18% Similarity=0.260 Sum_probs=69.4
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441 25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSY-DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF 103 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe-eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F 103 (389)
++||++|=||=+.++.+.++. +-..+|+--.|.. -++.+||-..-.+... ..-++|+.+ |+-+.-.. ...+|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~-Dg~~~v~~---~~~~f 150 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIID-DGVEFLRD---CEEKF 150 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEec-cHHHHHHh---CCCcC
Confidence 489999999999999999875 4678888888843 4555665322111111 223344433 33332111 12379
Q ss_pred ceEEEcCCC-CCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 104 DRIIFNFPH-AGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 104 DrIIFNFPH-~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
|.||-+--- .|. +. .-+-..||+.|...|+++|-+.+-
T Consensus 151 DvIi~D~tdp~gp-~~----------~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 151 DVIIVDSTDPVGP-AE----------ALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CEEEEcCCCCCCc-cc----------ccCCHHHHHHHHHhcCCCcEEEEe
Confidence 999998533 342 21 112368999999999999977766
No 123
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=80.94 E-value=5.9 Score=35.22 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=40.1
Q ss_pred CCEEEeccccCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441 80 GTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT 155 (389)
Q Consensus 80 Gv~VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 155 (389)
+++++.+ |+.+|. +..+.||.|+.+| +..-.+| ...+|+.+..+|+|||.+.|.-..
T Consensus 27 ~i~~~~~-d~~~lp----~~~~~fD~v~~~~---~l~~~~d-----------~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 27 CIEWIEG-DAIDLP----FDDCEFDAVTMGY---GLRNVVD-----------RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred ceEEEEe-chhhCC----CCCCCeeEEEecc---hhhcCCC-----------HHHHHHHHHHHcCcCeEEEEEECC
Confidence 4677666 888874 3457899999875 2111111 347889999999999999887554
No 124
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=80.69 E-value=4.4 Score=41.62 Aligned_cols=122 Identities=21% Similarity=0.273 Sum_probs=75.3
Q ss_pred CCCCCeE--EEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc
Q 016441 21 YSSNHQI--LLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL 98 (389)
Q Consensus 21 Yss~~rI--LLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L 98 (389)
...+.+| +.-|=|=||+..|-. |.+. |+|.-+....- .-.++|+..=+-.+....+.-||..+....
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~---g~~~-V~A~diNP~A~-----~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-- 254 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKK---GRPK-VYAIDINPDAV-----EYLKENIRLNKVEGRVEPILGDAREVAPEL-- 254 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhc---CCce-EEEEecCHHHH-----HHHHHHHHhcCccceeeEEeccHHHhhhcc--
Confidence 3345664 466888888776653 3233 99988774321 113456544333443334555777765432
Q ss_pred CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC-CCCccc---HHHHHhhCCc
Q 016441 99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV-PFSNWN---IKELAIGSSL 173 (389)
Q Consensus 99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-PY~sWn---Ie~LAa~aGL 173 (389)
..|||||.|.|+... .|..-|..+++.+|-||.=...-+ .-..|. |...|.+.|+
T Consensus 255 --~~aDrIim~~p~~a~------------------~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 255 --GVADRIIMGLPKSAH------------------EFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY 313 (341)
T ss_pred --ccCCEEEeCCCCcch------------------hhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccC
Confidence 789999999999653 688889999999999997654321 112233 4445556654
No 125
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=80.63 E-value=5 Score=38.19 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=68.3
Q ss_pred cccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCC
Q 016441 17 WIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELH 95 (389)
Q Consensus 17 ~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~ 95 (389)
++....+.++||=||=|-=.=+++||...+.+..|++.-.| ++.. .-|++|++...-. .++++.| ||.+.-..
T Consensus 62 ~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d--~~~~---~~A~~n~~~~gl~~~i~~~~g-da~~~L~~ 135 (234)
T PLN02781 62 MLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDID--KEAY---EVGLEFIKKAGVDHKINFIQS-DALSALDQ 135 (234)
T ss_pred HHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECC--HHHH---HHHHHHHHHcCCCCcEEEEEc-cHHHHHHH
Confidence 44566778899999987666567777765434455555544 3332 2467777654321 2444444 77553111
Q ss_pred C--CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 96 P--DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 96 ~--~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
. ......||.|..+-+. .-...+|.-+..+|++||.|.+.
T Consensus 136 l~~~~~~~~fD~VfiDa~k-----------------~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDADK-----------------PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHhCCCCCCCCEEEECCCH-----------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 0 0013579999886332 12336788889999999987763
No 126
>PRK07402 precorrin-6B methylase; Provisional
Probab=80.61 E-value=33 Score=31.11 Aligned_cols=106 Identities=15% Similarity=0.239 Sum_probs=67.0
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
..++++||=+|-|.=+++..+++.. .+..++|.-.+ .++.+ .+++|++.+.-..++++ .-|+...-. .+ .
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s--~~~~~---~a~~n~~~~~~~~v~~~-~~d~~~~~~--~~-~ 107 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERD--EEVVN---LIRRNCDRFGVKNVEVI-EGSAPECLA--QL-A 107 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCC--HHHHH---HHHHHHHHhCCCCeEEE-ECchHHHHh--hC-C
Confidence 3567899999999999999998764 23567766555 33333 36778776644345544 345543111 11 1
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
..+|+|+... + ++ +..+++.+..+|+++|.+.+...
T Consensus 108 ~~~d~v~~~~---~----~~-----------~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 108 PAPDRVCIEG---G----RP-----------IKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCEEEEEC---C----cC-----------HHHHHHHHHHhcCCCeEEEEEee
Confidence 3468876631 1 11 35778888889999999888754
No 127
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=80.41 E-value=11 Score=37.14 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=61.3
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH----hCCCEEEeccccCCCCCCCCc
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK----KLGTCILHGVDATTMELHPDL 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr----~~Gv~VlfgVDATkL~~~~~L 98 (389)
++.+||=||=|.=++|.+||+. +.+|+|.=.. ++ +|+.-+ +.|+.|=| .+...... ..
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~s-e~-----------~I~~Ak~ha~e~gv~i~y--~~~~~edl-~~ 120 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDAS-EK-----------PIEVAKLHALESGVNIDY--RQATVEDL-AS 120 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCC-hH-----------HHHHHHHhhhhccccccc--hhhhHHHH-Hh
Confidence 6778999999999999999985 3677775333 21 222211 12333211 11111111 11
Q ss_pred CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441 99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT 155 (389)
Q Consensus 99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 155 (389)
.+.+||.|+.+= +-.|-.=...|.++|.+|++|+|.+.++-=+
T Consensus 121 ~~~~FDvV~cmE--------------VlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 121 AGGQFDVVTCME--------------VLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred cCCCccEEEEhh--------------HHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 237899999762 1122222446999999999999999887544
No 128
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=80.23 E-value=38 Score=33.47 Aligned_cols=136 Identities=17% Similarity=0.243 Sum_probs=78.5
Q ss_pred ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441 16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH 95 (389)
Q Consensus 16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~ 95 (389)
+|+... ...+||=+|=|.=.|++.||+. +..++|.-.+ ....+ .|+.|++...-..+.+ ..-|+.++...
T Consensus 167 ~~l~~~-~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s--~~av~---~A~~n~~~~~l~~v~~-~~~D~~~~~~~ 236 (315)
T PRK03522 167 DWVREL-PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEIS--AEAIA---CAKQSAAELGLTNVQF-QALDSTQFATA 236 (315)
T ss_pred HHHHhc-CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCC--HHHHH---HHHHHHHHcCCCceEE-EEcCHHHHHHh
Confidence 454433 3478998888888888888874 2456555444 33332 3667776543223444 34577664321
Q ss_pred CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEE
Q 016441 96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSL 175 (389)
Q Consensus 96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L 175 (389)
....||.||.|=|..|. ++ +++ ..+.. +.+.+-|+|+.....-. =+++.+ .||.+
T Consensus 237 ---~~~~~D~Vv~dPPr~G~-~~-----------~~~-~~l~~----~~~~~ivyvsc~p~t~~--rd~~~l---~~y~~ 291 (315)
T PRK03522 237 ---QGEVPDLVLVNPPRRGI-GK-----------ELC-DYLSQ----MAPRFILYSSCNAQTMA--KDLAHL---PGYRI 291 (315)
T ss_pred ---cCCCCeEEEECCCCCCc-cH-----------HHH-HHHHH----cCCCeEEEEECCcccch--hHHhhc---cCcEE
Confidence 12469999999998773 11 111 11211 35556666665443311 134444 69999
Q ss_pred EEEeeCCCCCCCC
Q 016441 176 IWCSEFKIEDYPA 188 (389)
Q Consensus 176 ~~~~~F~~~~YPG 188 (389)
.+..+|| .||.
T Consensus 292 ~~~~~~D--mFP~ 302 (315)
T PRK03522 292 ERVQLFD--MFPH 302 (315)
T ss_pred EEEEEec--cCCC
Confidence 9999998 5774
No 129
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=78.83 E-value=35 Score=30.86 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=44.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCC-CCCCCCcCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATT-MELHPDLRT 100 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATk-L~~~~~Lk~ 100 (389)
....+||=||=|+=.++..|++..+ ..+ +..|..++..+ ..++.++.++. .|+.. +. .+..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~--~~~--~giD~s~~~i~----------~a~~~~~~~~~-~d~~~~l~---~~~~ 73 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQ--VRG--YGIEIDQDGVL----------ACVARGVNVIQ-GDLDEGLE---AFPD 73 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccC--CcE--EEEeCCHHHHH----------HHHHcCCeEEE-EEhhhccc---ccCC
Confidence 3567899999999899999987542 333 55664333332 22334666543 45543 21 1345
Q ss_pred CCcceEEEcCC
Q 016441 101 RKFDRIIFNFP 111 (389)
Q Consensus 101 ~~FDrIIFNFP 111 (389)
+.||.|+.|.+
T Consensus 74 ~sfD~Vi~~~~ 84 (194)
T TIGR02081 74 KSFDYVILSQT 84 (194)
T ss_pred CCcCEEEEhhH
Confidence 78999999965
No 130
>PLN03075 nicotianamine synthase; Provisional
Probab=78.53 E-value=20 Score=36.17 Aligned_cols=112 Identities=13% Similarity=0.191 Sum_probs=68.9
Q ss_pred CCCeEEEEecCChhHHHH-HHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEe-ccccCCCCCCCCcCC
Q 016441 23 SNHQILLVGEGDFSFSLC-LALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILH-GVDATTMELHPDLRT 100 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlS-La~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vlf-gVDATkL~~~~~Lk~ 100 (389)
...+||-||=|..=++.- |++.+.. +-.-+.+|..++..+ .|+.++......+-.|-| -.||.++... .
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p--~~~~~giD~d~~ai~---~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~----l 193 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP--TTSFHNFDIDPSAND---VARRLVSSDPDLSKRMFFHTADVMDVTES----L 193 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC--CCEEEEEeCCHHHHH---HHHHHhhhccCccCCcEEEECchhhcccc----c
Confidence 668899999998866444 4444433 335566776555554 366666543333333443 3677664221 3
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT 156 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 156 (389)
..||.|... =-+++ .+++ . ...|+.....|++||.+.+-...|
T Consensus 194 ~~FDlVF~~-ALi~~-dk~~-------k----~~vL~~l~~~LkPGG~Lvlr~~~G 236 (296)
T PLN03075 194 KEYDVVFLA-ALVGM-DKEE-------K----VKVIEHLGKHMAPGALLMLRSAHG 236 (296)
T ss_pred CCcCEEEEe-ccccc-cccc-------H----HHHHHHHHHhcCCCcEEEEecccc
Confidence 579998887 33333 1222 1 256677788999999999988665
No 131
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=77.93 E-value=36 Score=32.10 Aligned_cols=139 Identities=13% Similarity=0.139 Sum_probs=71.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHH----HHH----hCCCEEE-eccccCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLD----NLK----KLGTCIL-HGVDATTM 92 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~----~Lr----~~Gv~Vl-fgVDATkL 92 (389)
.+..|||.+|.|.=--++.||++ +.+||| .|--+...++- .++.++. .++ ..+..|- +-.|..++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~g--vD~S~~Ai~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLG--VELSEIAVEQF-FAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEE--EeCCHHHHHHH-HHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 35669999999999999999974 456655 45222222220 0011110 000 0122222 34455555
Q ss_pred CCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCe-EEEEecC------CCCC--Cccc
Q 016441 93 ELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGE-VHVSHKT------TVPF--SNWN 163 (389)
Q Consensus 93 ~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~Ge-IHVTLk~------g~PY--~sWn 163 (389)
.... ...||.|+ .. + ..+..+.++-..++++...+|+|+|. +.+|+.. |.|| +.-.
T Consensus 107 ~~~~---~~~fD~i~-D~---~--------~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~e 171 (213)
T TIGR03840 107 TAAD---LGPVDAVY-DR---A--------ALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAE 171 (213)
T ss_pred Cccc---CCCcCEEE-ec---h--------hhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHH
Confidence 4210 13466553 11 1 01123455667899999999999996 5566643 3342 3344
Q ss_pred HHHHHhh-CCcEEEEEeeC
Q 016441 164 IKELAIG-SSLSLIWCSEF 181 (389)
Q Consensus 164 Ie~LAa~-aGL~L~~~~~F 181 (389)
+.++-+. .++...++..+
T Consensus 172 L~~~f~~~~~i~~~~~~~~ 190 (213)
T TIGR03840 172 VEALYGGHYEIELLESRDV 190 (213)
T ss_pred HHHHhcCCceEEEEeeccc
Confidence 4443332 25555554443
No 132
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=77.93 E-value=21 Score=34.25 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=64.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
+..+||=||=|.=.++..|++.+........+..|-..++.+. |..+. .++.++. -|+..|. +....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~---A~~~~-----~~~~~~~-~d~~~lp----~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY---AAKRY-----PQVTFCV-ASSHRLP----FADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH---HHHhC-----CCCeEEE-eecccCC----CcCCc
Confidence 4467999998888899999887642212234556643333322 32221 2344443 3776653 44578
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHH
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKEL 167 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~L 167 (389)
||.|+.+|-.. +++....+|+++|.+.+... .|...|++.++
T Consensus 152 fD~I~~~~~~~---------------------~~~e~~rvLkpgG~li~~~p--~~~~l~el~~~ 193 (272)
T PRK11088 152 LDAIIRIYAPC---------------------KAEELARVVKPGGIVITVTP--GPRHLFELKGL 193 (272)
T ss_pred eeEEEEecCCC---------------------CHHHHHhhccCCCEEEEEeC--CCcchHHHHHH
Confidence 99999876210 12334568999999987643 24556766554
No 133
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=77.36 E-value=2.4 Score=43.77 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=39.1
Q ss_pred ccCCCCCCeEEEEecCChhHHHHH--HHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCC
Q 016441 18 IKHYSSNHQILLVGEGDFSFSLCL--ALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTME 93 (389)
Q Consensus 18 ~~~Yss~~rILLVGEGDFSFSlSL--a~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~ 93 (389)
...|-.++|+.++||++..++++- .+.+|-..-.++|.+.+.+...+ -++.|. .++.|+.+-|...|.
T Consensus 284 ~~~~l~Gkrvai~g~~~~~~~la~~L~eelGm~~v~v~t~~~~~~~~~~-------~~~~l~-~~~~v~~~~D~~~l~ 353 (427)
T PRK02842 284 YRELLRGKRVFFLPDSQLEIPLARFLSRECGMELVEVGTPYLNRRFLAA-------ELALLP-DGVRIVEGQDVERQL 353 (427)
T ss_pred hhhhcCCcEEEEECCchhHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHH-------HHHhcc-CCCEEEECCCHHHHH
Confidence 344557889999999986665543 44466544556666665544322 123332 256666666654443
No 134
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=76.57 E-value=0.87 Score=36.28 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=44.3
Q ss_pred EecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceEEEc
Q 016441 30 VGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFN 109 (389)
Q Consensus 30 VGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrIIFN 109 (389)
||=|.=+++..|++.+ ....+++ .|-.+.+.++ +++.+....... .....++...+... .....||.|+.+
T Consensus 3 iGcG~G~~~~~l~~~~-~~~~~~~--~D~s~~~l~~---a~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~fD~V~~~ 73 (99)
T PF08242_consen 3 IGCGTGRLLRALLEEL-PDARYTG--VDISPSMLER---ARERLAELGNDN-FERLRFDVLDLFDY--DPPESFDLVVAS 73 (99)
T ss_dssp ESTTTS-TTTTHHHHC--EEEEEE--EESSSSTTST---TCCCHHHCT----EEEEE--SSS---C--CC----SEEEEE
T ss_pred eCccChHHHHHHHHhC-CCCEEEE--EECCHHHHHH---HHHHhhhcCCcc-eeEEEeecCChhhc--ccccccceehhh
Confidence 6677777778888776 3445664 4522222221 222333322222 22334444443322 122689999988
Q ss_pred CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeE
Q 016441 110 FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEV 149 (389)
Q Consensus 110 FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeI 149 (389)
+-.-=. + =+..+++++.++|+|||.+
T Consensus 74 ~vl~~l---~-----------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHL---E-----------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS-----S------------HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhh---h-----------hHHHHHHHHHHHcCCCCCC
Confidence 543221 1 2558999999999999975
No 135
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=76.54 E-value=3.5 Score=40.50 Aligned_cols=144 Identities=24% Similarity=0.374 Sum_probs=84.8
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcc
Q 016441 25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFD 104 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FD 104 (389)
++||=.--|-=+-+..||...+....|+|.-.+. .-+ ....+|++.|--..+.+.. .|++++.... ....||
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~-~Rl----~~l~~~~~r~g~~~v~~~~-~D~~~~~~~~--~~~~fd 158 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISP-KRL----KRLKENLKRLGVFNVIVIN-ADARKLDPKK--PESKFD 158 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSH-HHH----HHHHHHHHHTT-SSEEEEE-SHHHHHHHHH--HTTTEE
T ss_pred ccccccccCCCCceeeeeecccchhHHHHhccCH-HHH----HHHHHHHHhcCCceEEEEe-eccccccccc--cccccc
Confidence 3344333333334455666555455677764442 222 2345565554444444444 7888874321 234799
Q ss_pred eEEEcCCCCCCCCC---c-c-----chHHHHHhHHHHHHHHHhhHhcc----cCCCeEEEEecCCCCCCccc-HHH-HHh
Q 016441 105 RIIFNFPHAGFYGK---E-D-----NHLLIEMHRSLVRDFFRNSSGML----RDGGEVHVSHKTTVPFSNWN-IKE-LAI 169 (389)
Q Consensus 105 rIIFNFPH~G~~gk---E-D-----~~r~Ir~nr~LL~~FF~SA~~lL----~~~GeIHVTLk~g~PY~sWn-Ie~-LAa 169 (389)
+|+-+=|..|. |. . + ....+.....+=...+.+|.+++ +++|.+.-+.|+=.|-..-. |+. +.+
T Consensus 159 ~VlvDaPCSg~-G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~ 237 (283)
T PF01189_consen 159 RVLVDAPCSGL-GTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKR 237 (283)
T ss_dssp EEEEECSCCCG-GGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHH
T ss_pred hhhcCCCccch-hhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 99999999994 31 1 1 11234444555567788999999 99999999999876654444 444 444
Q ss_pred hCCcEEEE
Q 016441 170 GSSLSLIW 177 (389)
Q Consensus 170 ~aGL~L~~ 177 (389)
+..+.+..
T Consensus 238 ~~~~~l~~ 245 (283)
T PF01189_consen 238 HPDFELVP 245 (283)
T ss_dssp STSEEEEC
T ss_pred CCCcEEEe
Confidence 45776654
No 136
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=74.68 E-value=13 Score=37.62 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=69.3
Q ss_pred CCCeEEEEecCC-hhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCEEEeccccCCCCCCCCcC
Q 016441 23 SNHQILLVGEGD-FSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL--GTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 23 s~~rILLVGEGD-FSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~--Gv~VlfgVDATkL~~~~~Lk 99 (389)
...+||=||=|- .-+.+ |+... .+..++||-.|.. .+. .|+.|++.--.. .+.++...|...+-......
T Consensus 114 ~~~~vLDIGtGag~I~~l-La~~~-~~~~~~atDId~~-Al~----~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPL-IGVHE-YGWRFVGSDIDPQ-ALA----SAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHH-HHhhC-CCCEEEEEeCCHH-HHH----HHHHHHHhccCCcCcEEEEEccchhhhhhccccc
Confidence 456899999994 44433 44333 2468999988743 222 366777653112 35566655655544322123
Q ss_pred CCCcceEEEcCCCCCCCCCccchHHHHHhHHH--------HHHHHHhhHhcccCCCeEEEEec
Q 016441 100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSL--------VRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~L--------L~~FF~SA~~lL~~~GeIHVTLk 154 (389)
..+||.||.|=|-.-. ..+.....-++-|.+ ...|=..+.+|+.+|||+-+-+.
T Consensus 187 ~~~fDlivcNPPf~~s-~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~ 248 (321)
T PRK11727 187 NERFDATLCNPPFHAS-AAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKR 248 (321)
T ss_pred CCceEEEEeCCCCcCc-chhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehH
Confidence 5689999999998764 222111111122222 11222356788889998765543
No 137
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.44 E-value=14 Score=35.58 Aligned_cols=75 Identities=24% Similarity=0.407 Sum_probs=52.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
+..++||=||=|-==-|+-||+.-+ .| +|.|..++|.+ .|+.|++.|.-.+|.|.+| |+.+ -+ -...
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~---~V--~siEr~~~L~~---~A~~~L~~lg~~nV~v~~g-DG~~--G~--~~~a 137 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVG---RV--VSIERIEELAE---QARRNLETLGYENVTVRHG-DGSK--GW--PEEA 137 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhC---eE--EEEEEcHHHHH---HHHHHHHHcCCCceEEEEC-Cccc--CC--CCCC
Confidence 5678999999998655666666543 34 45666677776 4889988888777888887 4443 11 1347
Q ss_pred CcceEEEc
Q 016441 102 KFDRIIFN 109 (389)
Q Consensus 102 ~FDrIIFN 109 (389)
+||+|+..
T Consensus 138 PyD~I~Vt 145 (209)
T COG2518 138 PYDRIIVT 145 (209)
T ss_pred CcCEEEEe
Confidence 89999986
No 138
>PRK06128 oxidoreductase; Provisional
Probab=73.94 E-value=31 Score=33.04 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=46.5
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
+++||+.| |+=..-.++++.+- .+.+|+.+..+..+. +.++..+.+++.|..+ .+.+|.++......+
T Consensus 55 ~k~vlITG-as~gIG~~~a~~l~~~G~~V~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 55 GRKALITG-ADSGIGRATAIAFAREGADIALNYLPEEEQ------DAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred CCEEEEec-CCCcHHHHHHHHHHHcCCEEEEEeCCcchH------HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH
Confidence 46799998 44444555555441 346787776653321 1334556667667544 467888875443211
Q ss_pred ---CCCCcceEEEcC
Q 016441 99 ---RTRKFDRIIFNF 110 (389)
Q Consensus 99 ---k~~~FDrIIFNF 110 (389)
...+.|.||.|=
T Consensus 128 ~~~~~g~iD~lV~nA 142 (300)
T PRK06128 128 AVKELGGLDILVNIA 142 (300)
T ss_pred HHHHhCCCCEEEECC
Confidence 124689998885
No 139
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=73.76 E-value=12 Score=35.95 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=58.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+..+||=||=|.=-.+..|++..+... -.+..|-.+.+++. |++.+.......+.. ..-||++|. +...
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~--~v~~vD~s~~ML~~---a~~k~~~~~~~~i~~-v~~da~~lp----~~d~ 115 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNG--KVVGVDISPGMLEV---ARKKLKREGLQNIEF-VQGDAEDLP----FPDN 115 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS-----EEEEEES-HHHHHH---HHHHHHHTT--SEEE-EE-BTTB------S-TT
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCcc--EEEEecCCHHHHHH---HHHHHHhhCCCCeeE-EEcCHHHhc----CCCC
Confidence 4567898887777777788888765433 44556744555442 444444322223333 346888875 3568
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
.||.|..-| |.....| ....++.+..+|+|||.+.|.=.
T Consensus 116 sfD~v~~~f---glrn~~d-----------~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 116 SFDAVTCSF---GLRNFPD-----------RERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp -EEEEEEES----GGG-SS-----------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEHHh---hHHhhCC-----------HHHHHHHHHHHcCCCeEEEEeec
Confidence 899999766 3211111 23467888899999998876443
No 140
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=69.13 E-value=54 Score=32.09 Aligned_cols=108 Identities=24% Similarity=0.389 Sum_probs=67.6
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeccccCCCCCCCCcCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC--ILHGVDATTMELHPDLRT 100 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~--VlfgVDATkL~~~~~Lk~ 100 (389)
++++||=||=|-=-++..|++..| ...|| ..|-.+.+++ -| .+.+++.|.. -+-.-||..|. +..
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~--~~D~s~~ML~---~a---~~k~~~~~~~~i~fv~~dAe~LP----f~D 117 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVV--GLDISESMLE---VA---REKLKKKGVQNVEFVVGDAENLP----FPD 117 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEE--EEECCHHHHH---HH---HHHhhccCccceEEEEechhhCC----CCC
Confidence 789999888888888889999887 33444 4563334432 13 3344444322 22345899886 567
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP 158 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P 158 (389)
+.||.|...| |...-.| ....++.+..+|+|+|++.| +--++|
T Consensus 118 ~sFD~vt~~f---glrnv~d-----------~~~aL~E~~RVlKpgG~~~v-le~~~p 160 (238)
T COG2226 118 NSFDAVTISF---GLRNVTD-----------IDKALKEMYRVLKPGGRLLV-LEFSKP 160 (238)
T ss_pred CccCEEEeee---hhhcCCC-----------HHHHHHHHHHhhcCCeEEEE-EEcCCC
Confidence 8999999876 2211111 23566778889999996554 444444
No 141
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=68.55 E-value=29 Score=35.23 Aligned_cols=97 Identities=13% Similarity=0.265 Sum_probs=64.3
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
.+++||++|+-+=.|...|+. ....+..+-|+....+ -+..|..+.|++++.... ...
T Consensus 19 ~~~~~l~~~~~~d~~~~~l~~---~~~~~~~~~~~~~~~~-------------~~~~~~~~~f~~~~~~~~------~~~ 76 (342)
T PRK09489 19 EQRRVLFAGDLQDDLPAQLDA---ASVRVHTQQFHHWQVL-------------SRQMGDNARFSLVATAED------VAD 76 (342)
T ss_pred CCCcEEEEcCcchhhHHhhhc---cceEEehhhhHHHHHH-------------HhhcCCceEeccccCCcc------CCC
Confidence 456899999999889888851 1223444434332111 113467889998887632 246
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT 156 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 156 (389)
||.||.=.|= ++.++..-+..+...|.+||+|.|.=...
T Consensus 77 ~d~~~~~~pk---------------~k~~~~~~l~~~~~~l~~g~~i~~~G~~~ 115 (342)
T PRK09489 77 CDTLIYYWPK---------------NKQEAQFQLMNLLSLLPVGTDIFVVGENR 115 (342)
T ss_pred CCEEEEECCC---------------CHHHHHHHHHHHHHhCCCCCEEEEEEecc
Confidence 8999998773 33445555677888899999999886543
No 142
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=68.48 E-value=37 Score=35.92 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=64.6
Q ss_pred CeEE--EEecCChhHHHHHHHH-h-C-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcC
Q 016441 25 HQIL--LVGEGDFSFSLCLALA-F-G-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 25 ~rIL--LVGEGDFSFSlSLa~~-~-g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk 99 (389)
.+|| .+|.|.|.-+.+-.-. . + ....+-.++.|-..++.+ .+..|+..+...+..|..+---........-.
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~---~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLK---RAKKLLGEFALLEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHH---HHHHHHhhcCCCCceeeecccccccccccccc
Confidence 3564 4677776555443211 1 1 112344455554344433 36677776654455544221111000000001
Q ss_pred CCCcceEEEcCCCCCCCCCccchH-------------------HHHHh-------------HHHHHHHH-HhhHhcccCC
Q 016441 100 TRKFDRIIFNFPHAGFYGKEDNHL-------------------LIEMH-------------RSLVRDFF-RNSSGMLRDG 146 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gkED~~r-------------------~Ir~n-------------r~LL~~FF-~SA~~lL~~~ 146 (389)
...||.||=|=|-...+-.++... ..+.. -.+...|| +-|..+|+++
T Consensus 110 ~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~ 189 (524)
T TIGR02987 110 LDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKN 189 (524)
T ss_pred cCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCC
Confidence 257999999999988532111110 00000 12344466 5789999999
Q ss_pred CeEEEEecCC
Q 016441 147 GEVHVSHKTT 156 (389)
Q Consensus 147 GeIHVTLk~g 156 (389)
|.+-+-+-++
T Consensus 190 G~~~~I~P~s 199 (524)
T TIGR02987 190 GYVSIISPAS 199 (524)
T ss_pred CEEEEEEChH
Confidence 9988776554
No 143
>PLN02476 O-methyltransferase
Probab=67.53 E-value=22 Score=35.49 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=72.6
Q ss_pred ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCC-CC
Q 016441 16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATT-ME 93 (389)
Q Consensus 16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATk-L~ 93 (389)
+++....+.++||=+|=|-=..|+++|+..+....|++.-.| ++.. .-|++|++..--. .++++.| ||.+ |.
T Consensus 111 ~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d--~e~~---~~Ar~n~~~aGl~~~I~li~G-dA~e~L~ 184 (278)
T PLN02476 111 AMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERD--SNSL---EVAKRYYELAGVSHKVNVKHG-LAAESLK 184 (278)
T ss_pred HHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECC--HHHH---HHHHHHHHHcCCCCcEEEEEc-CHHHHHH
Confidence 566677788999999999999999999877543345554444 3322 3467777653211 2455554 5543 21
Q ss_pred CC-CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 94 LH-PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 94 ~~-~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
+- ..-....||.|..+=+- .-...+|.-+.++|++||.|.+-
T Consensus 185 ~l~~~~~~~~FD~VFIDa~K-----------------~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 185 SMIQNGEGSSYDFAFVDADK-----------------RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHhcccCCCCCEEEECCCH-----------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence 10 00123579999987431 12457888889999999998864
No 144
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=65.24 E-value=34 Score=35.38 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=66.5
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcc
Q 016441 25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFD 104 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FD 104 (389)
.+||=++=|-=.|++.+|+..+ ...|+|.-.+.. ..+ .++.|++...-.++ .++.-||.++-.. ..+||
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~--Av~---~a~~N~~~N~~~~~-~v~~~Da~~~l~~----~~~fD 127 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPD--AVE---LIKKNLELNGLENE-KVFNKDANALLHE----ERKFD 127 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHH--HHH---HHHHHHHHhCCCce-EEEhhhHHHHHhh----cCCCC
Confidence 4787776666667777776654 446777555532 222 35667755432223 3677888764221 35699
Q ss_pred eEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441 105 RIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV 157 (389)
Q Consensus 105 rIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 157 (389)
.|+.|=| |. . ..|+.+|...++++|-|+||-.|..
T Consensus 128 ~V~lDP~--Gs-~---------------~~~l~~al~~~~~~gilyvSAtD~~ 162 (382)
T PRK04338 128 VVDIDPF--GS-P---------------APFLDSAIRSVKRGGLLCVTATDTA 162 (382)
T ss_pred EEEECCC--CC-c---------------HHHHHHHHHHhcCCCEEEEEecCch
Confidence 9999944 53 1 1688888888999999999955544
No 145
>PRK12744 short chain dehydrogenase; Provisional
Probab=64.59 E-value=58 Score=30.00 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=43.7
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
++++|++|=+. ....++|+.+- .+.+++..+..+.... ...+...++|+..++.+ .+.+|.++...-..+
T Consensus 8 ~k~vlItGa~~-gIG~~~a~~l~~~G~~vv~i~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 82 (257)
T PRK12744 8 GKVVLIAGGAK-NLGGLIARDLAAQGAKAVAIHYNSAASK----ADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDD 82 (257)
T ss_pred CcEEEEECCCc-hHHHHHHHHHHHCCCcEEEEecCCccch----HHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHH
Confidence 46799998554 35555665542 2445444443322111 11334456676667554 568898876543211
Q ss_pred ---CCCCcceEEEc
Q 016441 99 ---RTRKFDRIIFN 109 (389)
Q Consensus 99 ---k~~~FDrIIFN 109 (389)
+..+.|.||.|
T Consensus 83 ~~~~~~~id~li~~ 96 (257)
T PRK12744 83 AKAAFGRPDIAINT 96 (257)
T ss_pred HHHhhCCCCEEEEC
Confidence 12468988765
No 146
>PRK07985 oxidoreductase; Provisional
Probab=63.44 E-value=56 Score=31.43 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=42.4
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
++++|++|=+ =....++|+.+ ..+.+|+++..+...+-. ++-.+.+++.|..+ .+.+|+++...-..+
T Consensus 49 ~k~vlITGas-~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 121 (294)
T PRK07985 49 DRKALVTGGD-SGIGRAAAIAYAREGADVAISYLPVEEEDA------QDVKKIIEECGRKAVLLPGDLSDEKFARSLVHE 121 (294)
T ss_pred CCEEEEECCC-CcHHHHHHHHHHHCCCEEEEecCCcchhhH------HHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHH
Confidence 4689999943 33444444443 135678887654322111 11223344556544 467888875432111
Q ss_pred ---CCCCcceEEEcC
Q 016441 99 ---RTRKFDRIIFNF 110 (389)
Q Consensus 99 ---k~~~FDrIIFNF 110 (389)
...+.|.+|.|-
T Consensus 122 ~~~~~g~id~lv~~A 136 (294)
T PRK07985 122 AHKALGGLDIMALVA 136 (294)
T ss_pred HHHHhCCCCEEEECC
Confidence 125689999874
No 147
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=63.13 E-value=17 Score=33.06 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=50.6
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeccccCCCCCCCCcCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-KLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+++||++|+=+=.|...|.+. +..+.+-+++- . ....++ ..++.+.|+++.... .
T Consensus 12 ~~k~vL~~g~~~D~~~~~L~~~---~~~v~~~~~~~----------~--~~~~~~~~~~~~~~f~~~~~~~--------~ 68 (155)
T PF08468_consen 12 EGKSVLFAGDPQDDLPAQLPAI---AVSVHVFSYHH----------W--YALQKQAQSNVQFHFGAELPAD--------Q 68 (155)
T ss_dssp TT-EEEEEE---SSHHHHS--S---EEEEEESBHHH----------H--HHHHHHHGGGEEE-SS--HHHH--------T
T ss_pred CCCeEEEEcCCchhhHHHhhhc---CCEEEEEEchH----------H--HHHhHhcccCceEeeeccCCcc--------c
Confidence 3567999997776777777643 23455555221 1 011111 345777777766542 4
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH 153 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL 153 (389)
.||.||+-.|= +++++.--+.++...|.+||+|.|-=
T Consensus 69 ~~D~vvly~PK---------------aK~e~~~lL~~l~~~L~~g~~i~vVG 105 (155)
T PF08468_consen 69 DFDTVVLYWPK---------------AKAEAQYLLANLLSHLPPGTEIFVVG 105 (155)
T ss_dssp T-SEEEEE--S---------------SHHHHHHHHHHHHTTS-TT-EEEEEE
T ss_pred CCCEEEEEccC---------------cHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 69999999983 45566666788899999999999874
No 148
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=62.93 E-value=1.2e+02 Score=29.03 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=71.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.++++++=||.|-=|-+.-+|.. +....++| .|..++..+ ..+.|.+.+.-.++.|+-| ||-+.-. .+ .
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~A--Ie~~~~a~~---~~~~N~~~fg~~n~~vv~g-~Ap~~L~--~~--~ 101 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALA-GPSGRVIA--IERDEEALE---LIERNAARFGVDNLEVVEG-DAPEALP--DL--P 101 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCCceEEE--EecCHHHHH---HHHHHHHHhCCCcEEEEec-cchHhhc--CC--C
Confidence 45778999999999999999844 33334555 554343333 3577888888556666655 4444221 12 2
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV 157 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 157 (389)
.||+|. +|+ |. . +..-++.|...|+++|+|.++-.+-+
T Consensus 102 ~~daiF-----IGG-g~-~-----------i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 102 SPDAIF-----IGG-GG-N-----------IEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred CCCEEE-----ECC-CC-C-----------HHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 699996 454 32 1 44678889999999999998877654
No 149
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=62.88 E-value=1.3e+02 Score=28.00 Aligned_cols=151 Identities=16% Similarity=0.167 Sum_probs=83.9
Q ss_pred ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441 16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH 95 (389)
Q Consensus 16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~ 95 (389)
+.+....+..+||=||=|.=.++..|++..+ ...++|. |-.+++.+. |++++ .++.+.. .|+..
T Consensus 36 ~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~gi--DiS~~~l~~---A~~~~-----~~~~~~~-~d~~~---- 99 (204)
T TIGR03587 36 RALNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGV--EINEYAVEK---AKAYL-----PNINIIQ-GSLFD---- 99 (204)
T ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEE--ECCHHHHHH---HHhhC-----CCCcEEE-eeccC----
Confidence 4455666788999999999999999988753 3455555 533333332 33332 2344443 35543
Q ss_pred CCcCCCCcceEEEcCC--CCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec-----------CCCCCCcc
Q 016441 96 PDLRTRKFDRIIFNFP--HAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK-----------TTVPFSNW 162 (389)
Q Consensus 96 ~~Lk~~~FDrIIFNFP--H~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk-----------~g~PY~sW 162 (389)
.+..+.||.|+.+.- |+. .+-+..+++.+..+++ +.|.|+-. .... ..|
T Consensus 100 -~~~~~sfD~V~~~~vL~hl~--------------p~~~~~~l~el~r~~~--~~v~i~e~~~~~~~~~~y~~~~~-~~~ 161 (204)
T TIGR03587 100 -PFKDNFFDLVLTKGVLIHIN--------------PDNLPTAYRELYRCSN--RYILIAEYYNPSPVEISYRGNSG-RLW 161 (204)
T ss_pred -CCCCCCEEEEEECChhhhCC--------------HHHHHHHHHHHHhhcC--cEEEEEEeeCCCceeeeeeCCcc-hhh
Confidence 234578999998764 432 2234455555555542 33333222 1111 234
Q ss_pred cH---HHHHhh-CCcEEEEEeeCCCCCCCCCccccCCCCCCCCCccCCCcceEEEEe
Q 016441 163 NI---KELAIG-SSLSLIWCSEFKIEDYPAYNNKRGDGPRCDEPFPLGECSTFIFGF 215 (389)
Q Consensus 163 nI---e~LAa~-aGL~L~~~~~F~~~~YPGY~hKRt~G~rsdk~F~~g~a~TfvF~k 215 (389)
.- ..+.+. .+|+|+.-. |. | +.+..||..++.-|-++|
T Consensus 162 ~~d~~~~~~~~~~~l~~~~~~-~~------~--------~~~~~~~~~~~~~~~~~~ 203 (204)
T TIGR03587 162 KRDFAGEMMDRYPDLKLVDYG-FP------Y--------HRDPEFPNDDITWFLLEK 203 (204)
T ss_pred hhhHHHHHHHhCCcceeeecc-ce------e--------ecCCCCCCCCceEEEEec
Confidence 33 233333 357777732 22 3 235688999888888876
No 150
>PRK07806 short chain dehydrogenase; Provisional
Probab=62.50 E-value=37 Score=30.87 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=61.0
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L--- 98 (389)
..+||++|=..| --.+|++.+ ..+.+|++++.+..+.+ +...++|+..|.. ..+..|.++......+
T Consensus 6 ~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRA-------NKVVAEIEAAGGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhH-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 468999996543 445555544 23567888776543211 2234455555544 3567898886543211
Q ss_pred ---CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441 99 ---RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV 151 (389)
Q Consensus 99 ---k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV 151 (389)
+....|.||.|-.-... ...+....++.|-.-....++.+.+.+..+|.|..
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~-~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~ 132 (248)
T PRK07806 78 AREEFGGLDALVLNASGGME-SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF 132 (248)
T ss_pred HHHhCCCCcEEEECCCCCCC-CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence 11468998888532211 11111111222333334455566666655565443
No 151
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=62.37 E-value=28 Score=34.41 Aligned_cols=109 Identities=19% Similarity=0.335 Sum_probs=66.6
Q ss_pred eEEEEecC---ChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhh--hHHHHHHHHHhCCCEEE-ec-cccCCCCCCCCc
Q 016441 26 QILLVGEG---DFSFSLCLALAFGSASNICASSLDSYDDVIQKYK--RAKSNLDNLKKLGTCIL-HG-VDATTMELHPDL 98 (389)
Q Consensus 26 rILLVGEG---DFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~--~A~~Ni~~Lr~~Gv~Vl-fg-VDATkL~~~~~L 98 (389)
.+|=||=| ||-| +.-......|++|+-+.+. +|- .+.+| .--.|. |- -|+.+|. +|
T Consensus 79 ~vLEvgcGtG~Nfkf-------y~~~p~~svt~lDpn~~me-e~~~ks~~E~------k~~~~~~fvva~ge~l~---~l 141 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKF-------YPWKPINSVTCLDPNEKME-EIADKSAAEK------KPLQVERFVVADGENLP---QL 141 (252)
T ss_pred ceEEecccCCCCccc-------ccCCCCceEEEeCCcHHHH-HHHHHHHhhc------cCcceEEEEeechhcCc---cc
Confidence 36888876 4433 1112457789999865543 332 23333 233333 22 3556664 45
Q ss_pred CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEE-EEecCCCCCCcccHHH
Q 016441 99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVH-VSHKTTVPFSNWNIKE 166 (389)
Q Consensus 99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIH-VTLk~g~PY~sWnIe~ 166 (389)
....+|.||--|=-+.. ||.. .-+.+.+.+|+|+|.|. +-|..+ +|..||-.-
T Consensus 142 ~d~s~DtVV~TlvLCSv---e~~~-----------k~L~e~~rlLRpgG~iifiEHva~-~y~~~n~i~ 195 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSV---EDPV-----------KQLNEVRRLLRPGGRIIFIEHVAG-EYGFWNRIL 195 (252)
T ss_pred ccCCeeeEEEEEEEecc---CCHH-----------HHHHHHHHhcCCCcEEEEEecccc-cchHHHHHH
Confidence 77899999999887764 4432 23456778999999765 556666 488887544
No 152
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=62.20 E-value=26 Score=36.23 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=66.4
Q ss_pred eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcce
Q 016441 26 QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDR 105 (389)
Q Consensus 26 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDr 105 (389)
+||=.-=|-=.+++-.++..+....|+|.-.+.. . +..++.|++..+...+.|..+ ||.++-.. ...+||.
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~-A----v~~i~~N~~~N~~~~~~v~~~-Da~~~l~~---~~~~fDv 117 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPK-A----VESIKNNVEYNSVENIEVPNE-DAANVLRY---RNRKFHV 117 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHH-H----HHHHHHHHHHhCCCcEEEEch-hHHHHHHH---hCCCCCE
Confidence 5655555555566666655323457888655532 2 224677886665444556555 77765322 1357999
Q ss_pred EEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441 106 IIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV 157 (389)
Q Consensus 106 IIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 157 (389)
|.++=| |. . ..|+.+|.+.++.+|-++||--|+.
T Consensus 118 IdlDPf--Gs---~-------------~~fld~al~~~~~~glL~vTaTD~~ 151 (374)
T TIGR00308 118 IDIDPF--GT---P-------------APFVDSAIQASAERGLLLVTATDTS 151 (374)
T ss_pred EEeCCC--CC---c-------------HHHHHHHHHhcccCCEEEEEecccH
Confidence 999843 42 1 1699999999999999999965553
No 153
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=62.18 E-value=62 Score=31.56 Aligned_cols=96 Identities=15% Similarity=0.241 Sum_probs=55.0
Q ss_pred CCCeEEEEecCChhHH-HHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 23 SNHQILLVGEGDFSFS-LCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 23 s~~rILLVGEGDFSFS-lSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.+++||+.|=|-.-.. ..||++.| ...|+||... .+.++.++++|+......+-.++.+.... ..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~------------~~~~~~a~~lGa~~vi~~~~~~~~~~~~~-~g 234 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVS------------PRSLSLAREMGADKLVNPQNDDLDHYKAE-KG 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCC------------HHHHHHHHHcCCcEEecCCcccHHHHhcc-CC
Confidence 5789999998766533 34566665 3367777544 23556677889865543221122211111 23
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
.+|.| |+. +|. . .-+..+.++|+++|.|.+.
T Consensus 235 ~~D~v-id~--~G~---~--------------~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 235 YFDVS-FEV--SGH---P--------------SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CCCEE-EEC--CCC---H--------------HHHHHHHHHhhcCCEEEEE
Confidence 47755 564 453 0 2345567788999987754
No 154
>PLN02672 methionine S-methyltransferase
Probab=61.85 E-value=1e+02 Score=36.59 Aligned_cols=142 Identities=13% Similarity=0.031 Sum_probs=84.2
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH--hC--------------CCEEEecc
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK--KL--------------GTCILHGV 87 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr--~~--------------Gv~VlfgV 87 (389)
..+||=+|=|+=-.+++|++... ...++|+-.+ .+.+. -|+.|++... +. .+++ +.-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis-~~Al~----~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f-~~s 191 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDIN-PRAVK----VAWINLYLNALDDDGLPVYDGEGKTLLDRVEF-YES 191 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECC-HHHHH----HHHHHHHHcCcccccccccccccccccccEEE-EEC
Confidence 35899999999999999998764 3467777443 33332 2666765421 11 1222 223
Q ss_pred ccCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHh------------------------HHHHHHHHHhhHhcc
Q 016441 88 DATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMH------------------------RSLVRDFFRNSSGML 143 (389)
Q Consensus 88 DATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~n------------------------r~LL~~FF~SA~~lL 143 (389)
|....-. -.+.+||.||-|=|=+...-.+.....++.| -.+.+.....|..+|
T Consensus 192 Dl~~~~~---~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L 268 (1082)
T PLN02672 192 DLLGYCR---DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVI 268 (1082)
T ss_pred chhhhcc---ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhc
Confidence 4432110 0123699999999987641111222233321 123466788899999
Q ss_pred cCCCeEEEEecCCCCCCcccHH-HHHhhCCcEEEEE
Q 016441 144 RDGGEVHVSHKTTVPFSNWNIK-ELAIGSSLSLIWC 178 (389)
Q Consensus 144 ~~~GeIHVTLk~g~PY~sWnIe-~LAa~aGL~L~~~ 178 (389)
+++|.+.+-+-..+- . .+. ++.++.|+.....
T Consensus 269 ~pgG~l~lEiG~~q~-~--~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 269 KPMGIMIFNMGGRPG-Q--AVCERLFERRGFRITKL 301 (1082)
T ss_pred cCCCEEEEEECccHH-H--HHHHHHHHHCCCCeeEE
Confidence 999998887754431 1 455 4677777766554
No 155
>PHA03412 putative methyltransferase; Provisional
Probab=60.78 E-value=42 Score=33.10 Aligned_cols=107 Identities=17% Similarity=0.103 Sum_probs=63.5
Q ss_pred CCeEEEEecCChhHHHHHHHHhC--CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 24 NHQILLVGEGDFSFSLCLALAFG--SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~g--s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
..+||=+|=|.=.|++++++... ...+|+|--+|....- -|..|+. .+.++ ..|+.... + ..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~-----~Ar~n~~-----~~~~~-~~D~~~~~----~-~~ 113 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYK-----LGKRIVP-----EATWI-NADALTTE----F-DT 113 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHH-----HHHhhcc-----CCEEE-Ecchhccc----c-cC
Confidence 56999998888899999987642 2346777777743221 2344532 24443 35654322 2 35
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCe
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGE 148 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~Ge 148 (389)
+||.||-|=|..-.+ ..+. ......-.+...|++.|.+++++|+-
T Consensus 114 ~FDlIIsNPPY~~~~-~~d~-~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 114 LFDMAISNPPFGKIK-TSDF-KGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CccEEEECCCCCCcc-cccc-CCcccccHHHHHHHHHHHHHcCCCEE
Confidence 899999999988532 1111 00011224566688888886666553
No 156
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=60.22 E-value=1.5e+02 Score=28.11 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=59.5
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHH-HHh-------CCCEEE-eccccCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDN-LKK-------LGTCIL-HGVDATTM 92 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~-Lr~-------~Gv~Vl-fgVDATkL 92 (389)
.+..+||.+|.|.=--++.||.. +.+|||.=+. ...+ ++.- .+.++.. ... .+..|- +--|+.++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s-~~Ai-~~~~-~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELS-ELAV-EQFF-AENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccC-HHHH-HHHH-HHcCCCccccccccccccccCceEEEECcccCC
Confidence 45679999999999999999974 4567665443 2222 2210 0111110 000 011111 23344444
Q ss_pred CCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCe-EEEEec
Q 016441 93 ELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGE-VHVSHK 154 (389)
Q Consensus 93 ~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~Ge-IHVTLk 154 (389)
... ....||.|+= ....+..+.++-..+++....+|+|||. +.+|+.
T Consensus 110 ~~~---~~~~fd~v~D------------~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 110 TAA---DLADVDAVYD------------RAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred Ccc---cCCCeeEEEe------------hHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 221 1134555541 0111233455667899999999999996 455664
No 157
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=59.89 E-value=73 Score=29.70 Aligned_cols=102 Identities=22% Similarity=0.215 Sum_probs=62.9
Q ss_pred ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC
Q 016441 18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD 97 (389)
Q Consensus 18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~ 97 (389)
...+++..+||=||-|.=+|+.+|++++. ++-+|.+|-.+.+. .+.+ ...+++ ..-|.. ..
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P---~l~~~v~Dlp~v~~----~~~~------~~rv~~-~~gd~f--~~--- 155 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYP---NLRATVFDLPEVIE----QAKE------ADRVEF-VPGDFF--DP--- 155 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHST---TSEEEEEE-HHHHC----CHHH------TTTEEE-EES-TT--TC---
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCC---CCcceeeccHhhhh----cccc------cccccc-ccccHH--hh---
Confidence 34566777899999999999999999973 56789999765442 2333 233333 333443 22
Q ss_pred cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCC--CeEEEE
Q 016441 98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDG--GEVHVS 152 (389)
Q Consensus 98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~--GeIHVT 152 (389)
+. . +|.|++ -|+=..- ..+-....++++...|+|+ |+|.|-
T Consensus 156 ~P-~-~D~~~l--~~vLh~~----------~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 156 LP-V-ADVYLL--RHVLHDW----------SDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp CS-S-ESEEEE--ESSGGGS-----------HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hc-c-ccceee--ehhhhhc----------chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 11 2 899887 3443111 1223445667788889988 998875
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=59.80 E-value=27 Score=33.76 Aligned_cols=113 Identities=22% Similarity=0.269 Sum_probs=72.4
Q ss_pred ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeccccCCCCC
Q 016441 16 KWIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG-TCILHGVDATTMEL 94 (389)
Q Consensus 16 K~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G-v~VlfgVDATkL~~ 94 (389)
+++...+...+||=+|=+-===|+-+|........||+.-+|++ ++..|++|+++---.. +.++.+-||-..-+
T Consensus 52 ~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e-----~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~ 126 (219)
T COG4122 52 RLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEE-----RAEIARENLAEAGVDDRIELLLGGDALDVLS 126 (219)
T ss_pred HHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHH-----HHHHHHHHHHHcCCcceEEEEecCcHHHHHH
Confidence 55666778889999997632224455666642335666666642 3345788887755444 45555557766544
Q ss_pred CCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 95 HPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 95 ~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
. +....||.|--+ + .| ..-..||..+.++|++||-|.+-
T Consensus 127 ~--~~~~~fDliFID---a---dK-----------~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 127 R--LLDGSFDLVFID---A---DK-----------ADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred h--ccCCCccEEEEe---C---Ch-----------hhCHHHHHHHHHHhCCCcEEEEe
Confidence 3 345889998654 1 12 22458999999999999988764
No 159
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=59.36 E-value=55 Score=33.12 Aligned_cols=108 Identities=21% Similarity=0.261 Sum_probs=69.0
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF 103 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F 103 (389)
+++||=||=|.==-|-.||+. +.+|++ .|--+++.+-+..- .-..-..+.++.-.-+-+.+.++.. ...|
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~G--ID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~----~~~f 159 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTG--IDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGL----TGKF 159 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEe--ecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhc----cccc
Confidence 478999999998888888874 355655 34333333322111 1112223344444444455555443 2459
Q ss_pred ceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441 104 DRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT 155 (389)
Q Consensus 104 DrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 155 (389)
|.|+. ..+-.|-+-+..|..++.++|+|+|.+.||--+
T Consensus 160 DaVvc--------------sevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 160 DAVVC--------------SEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred ceeee--------------HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 99984 135567777899999999999999999998644
No 160
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=59.07 E-value=42 Score=32.18 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=72.3
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCH--HHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC
Q 016441 20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSY--DDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD 97 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSe--eeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~ 97 (389)
-..++--||=+|=|+==|++++..+-..+.+|+|-.++.. ..|.++|++.. +.+-||-.|..+..
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~-------------ii~gda~~l~~~l~ 111 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVN-------------IINGDAFDLRTTLG 111 (194)
T ss_pred CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCcc-------------ccccchhhHHHHHh
Confidence 3456777999999999999999876445678888877753 67778887652 55667777764432
Q ss_pred -cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCC
Q 016441 98 -LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGG 147 (389)
Q Consensus 98 -Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~G 147 (389)
.++..||.||---|-.-+.- .+.| ..++++...|..+|
T Consensus 112 e~~gq~~D~viS~lPll~~P~----~~~i--------aile~~~~rl~~gg 150 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPM----HRRI--------AILESLLYRLPAGG 150 (194)
T ss_pred hcCCCeeeeEEeccccccCcH----HHHH--------HHHHHHHHhcCCCC
Confidence 35688999999988887511 1112 34556667787755
No 161
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=58.72 E-value=1.4e+02 Score=30.47 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=74.7
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCc
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKF 103 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~F 103 (389)
..+||=+|=|.=+|+++||.. +..++|.-.+. +.+ + .|+.|.+.+.-..+. ...-|+.+.... . ...|
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~-~av-~---~a~~N~~~~~~~~~~-~~~~d~~~~~~~--~-~~~~ 301 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIES-EAI-A---CAQQSAQMLGLDNLS-FAALDSAKFATA--Q-MSAP 301 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc---CCeEEEEECCH-HHH-H---HHHHHHHHcCCCcEE-EEECCHHHHHHh--c-CCCC
Confidence 457876666666667777643 24566655543 222 2 366777655322333 345566553221 1 1359
Q ss_pred ceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEeeCCC
Q 016441 104 DRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCSEFKI 183 (389)
Q Consensus 104 DrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~~F~~ 183 (389)
|.||.|=|-.|. .++++.... -+++++-|+|+..-.. -.=++..| .||.+....+||
T Consensus 302 D~vi~DPPr~G~------------~~~~l~~l~-----~~~p~~ivyvsc~p~T--laRDl~~L---~gy~l~~~~~~D- 358 (374)
T TIGR02085 302 ELVLVNPPRRGI------------GKELCDYLS-----QMAPKFILYSSCNAQT--MAKDIAEL---SGYQIERVQLFD- 358 (374)
T ss_pred CEEEECCCCCCC------------cHHHHHHHH-----hcCCCeEEEEEeCHHH--HHHHHHHh---cCceEEEEEEec-
Confidence 999999997763 112222111 1678888888865332 11244445 699999999998
Q ss_pred CCCCC
Q 016441 184 EDYPA 188 (389)
Q Consensus 184 ~~YPG 188 (389)
.||.
T Consensus 359 -mFPq 362 (374)
T TIGR02085 359 -MFPH 362 (374)
T ss_pred -cCCC
Confidence 6774
No 162
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=58.40 E-value=1.3e+02 Score=29.37 Aligned_cols=120 Identities=19% Similarity=0.197 Sum_probs=80.9
Q ss_pred EEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceE
Q 016441 27 ILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRI 106 (389)
Q Consensus 27 ILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrI 106 (389)
+|=+|=|.===|..|++..+...--+||-...++ ++..++..+..++. ..|=.|+|.. .|+.++-|.+
T Consensus 47 ~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A--------~~~Tl~TA~~n~~~--~~~V~tdl~~--~l~~~~VDvL 114 (209)
T KOG3191|consen 47 CLEIGCGSGVVSTFLASVIGPQALYLATDINPEA--------LEATLETARCNRVH--IDVVRTDLLS--GLRNESVDVL 114 (209)
T ss_pred EEEecCCcchHHHHHHHhcCCCceEEEecCCHHH--------HHHHHHHHHhcCCc--cceeehhHHh--hhccCCccEE
Confidence 5678888888888888887755556677555321 24466677766665 3333445443 3456899999
Q ss_pred EEcCCCCCCCCCccchHHHH-------HhHHHHHHHHHhhHhcccCCCeEEE-EecCCCC
Q 016441 107 IFNFPHAGFYGKEDNHLLIE-------MHRSLVRDFFRNSSGMLRDGGEVHV-SHKTTVP 158 (389)
Q Consensus 107 IFNFPH~G~~gkED~~r~Ir-------~nr~LL~~FF~SA~~lL~~~GeIHV-TLk~g~P 158 (389)
|||=|-+-..-.+...++|. .=|+.+..|+.-..++|++.|-..+ ++....|
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p 174 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP 174 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH
Confidence 99999987533333445553 3478899999999999999997765 4444444
No 163
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=57.14 E-value=17 Score=35.43 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=48.6
Q ss_pred cccCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHH
Q 016441 87 VDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKE 166 (389)
Q Consensus 87 VDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~ 166 (389)
|=|++|.. ..|.....|.+||-.=..|. + +.+|++-|..+|+++|++.|.=..+.--+.=...+
T Consensus 108 Vtacdia~-vPL~~~svDv~VfcLSLMGT----n-----------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~ 171 (219)
T PF05148_consen 108 VTACDIAN-VPLEDESVDVAVFCLSLMGT----N-----------WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIK 171 (219)
T ss_dssp EEES-TTS--S--TT-EEEEEEES---SS----------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHH
T ss_pred EEEecCcc-CcCCCCceeEEEEEhhhhCC----C-----------cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHH
Confidence 55667744 34788999999999999985 2 56999999999999999999877664222222234
Q ss_pred HHhhCCcEEEEE
Q 016441 167 LAIGSSLSLIWC 178 (389)
Q Consensus 167 LAa~aGL~L~~~ 178 (389)
.-+..|+.+..+
T Consensus 172 ~~~~~GF~~~~~ 183 (219)
T PF05148_consen 172 ALKKLGFKLKSK 183 (219)
T ss_dssp HHHCTTEEEEEE
T ss_pred HHHHCCCeEEec
Confidence 555678888764
No 164
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=55.55 E-value=12 Score=38.57 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=39.5
Q ss_pred cCCCCCCeEEEEecCChhHHHHHH-HHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCC
Q 016441 19 KHYSSNHQILLVGEGDFSFSLCLA-LAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMEL 94 (389)
Q Consensus 19 ~~Yss~~rILLVGEGDFSFSlSLa-~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~ 94 (389)
..|-.++|+.++||++..++++=. ..+|-..-.++|.+.+.+...+ -++.|.+ ++.|+.+-|...|.+
T Consensus 269 ~~~l~Gkrv~i~gd~~~~~~l~~~L~elGm~~v~~~t~~~~~~~~~~-------~~~~l~~-~~~v~~~~d~~~l~~ 337 (407)
T TIGR01279 269 TQLLRGKKIFFFGDNLLELPLARFLKRCGMEVVECGTPYIHRRFHAA-------ELALLEG-GVRIVEQPDFHRQLQ 337 (407)
T ss_pred HHhcCCCEEEEECCchHHHHHHHHHHHCCCEEEEecCCCCChHHHHH-------HHhhcCC-CCeEEeCCCHHHHHH
Confidence 345578999999999988865522 3366444445555555443221 2233322 567777777765543
No 165
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=54.87 E-value=98 Score=30.03 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=33.5
Q ss_pred CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441 100 TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP 158 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P 158 (389)
.+.||.|+... ..+..........++....+|+|||.+.|.+.+.-+
T Consensus 201 ~~~fD~I~crn------------vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~~ 247 (264)
T smart00138 201 LGDFDLIFCRN------------VLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESLP 247 (264)
T ss_pred cCCCCEEEech------------hHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccCC
Confidence 46899998632 112233445567788888999999999999887753
No 166
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=54.36 E-value=31 Score=31.22 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=62.9
Q ss_pred cCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH---hCCCEEEeccccCCCCCC
Q 016441 19 KHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK---KLGTCILHGVDATTMELH 95 (389)
Q Consensus 19 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr---~~Gv~VlfgVDATkL~~~ 95 (389)
.....+.+||=+|=|-==-+.++|+.. .+..||+|=++..-++ .+.|++.=. ...+.|. ..|-.+-...
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~~l~~------l~~Ni~~N~~~~~~~v~v~-~L~Wg~~~~~ 112 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNEVLEL------LRRNIELNGSLLDGRVSVR-PLDWGDELDS 112 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S-HHHH------HHHHHHTT--------EEE-E--TTS-HHH
T ss_pred hhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccchhhHH------HHHHHHhccccccccccCc-EEEecCcccc
Confidence 345667899999998766666666654 3678999998873332 334443311 1112221 1121110000
Q ss_pred CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441 96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT 156 (389)
Q Consensus 96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 156 (389)
..+...+||.||- .| +-.+.+++..++.....+|+++|.|.++....
T Consensus 113 ~~~~~~~~D~Ila----------sD----v~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 113 DLLEPHSFDVILA----------SD----VLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp HHHS-SSBSEEEE----------ES------S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cccccccCCEEEE----------ec----ccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 1123468999973 12 33566788889999999999999999999876
No 167
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=54.14 E-value=21 Score=36.28 Aligned_cols=89 Identities=22% Similarity=0.350 Sum_probs=57.5
Q ss_pred CeEEEE-ecCChhHHHHHHHHhCC-----CCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc
Q 016441 25 HQILLV-GEGDFSFSLCLALAFGS-----ASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL 98 (389)
Q Consensus 25 ~rILLV-GEGDFSFSlSLa~~~gs-----~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L 98 (389)
+++|+| =|.-=|-+-++-..+|. +.||-|..+|+...+.+........+..+-..+ .+.++-+..+...+.+
T Consensus 31 ~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v~~~~~~~~~~~--~l~~~~~~e~~~~PGi 108 (322)
T COG0003 31 KKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEVKDYLARLLRTR--GLGGIYADELATLPGI 108 (322)
T ss_pred CcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHHHHHHHhhcccc--ccchhHHHHHhhCCCH
Confidence 446665 67776666666554432 359999999998888776666665554443333 3345544444444432
Q ss_pred -------------CCCCcceEEEcCCCCCC
Q 016441 99 -------------RTRKFDRIIFNFPHAGF 115 (389)
Q Consensus 99 -------------k~~~FDrIIFNFPH~G~ 115 (389)
....||+|||+-|=+|.
T Consensus 109 dE~~~l~~i~e~~~~~~yD~IV~DtaPTG~ 138 (322)
T COG0003 109 DEALALLKILEYYVSGEYDVIVVDTAPTGH 138 (322)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEcCCChHH
Confidence 34779999999999994
No 168
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=54.01 E-value=1.1e+02 Score=32.10 Aligned_cols=95 Identities=24% Similarity=0.302 Sum_probs=60.7
Q ss_pred HHHHHhC--CCEEEeccccCCCCCCC-----CcCCCCcceEEEcCCCCCCCCCccchHHHHHh-H---------HHHHHH
Q 016441 73 LDNLKKL--GTCILHGVDATTMELHP-----DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMH-R---------SLVRDF 135 (389)
Q Consensus 73 i~~Lr~~--Gv~VlfgVDATkL~~~~-----~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~n-r---------~LL~~F 135 (389)
+.+++.. ....+-++|++.....- ..+.-.||||.-+=|+.|- |.--.+.+|.+- + .|=..-
T Consensus 200 ~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~D-gt~rk~~~i~~~~w~~~~~~~L~~LQ~~i 278 (375)
T KOG2198|consen 200 VHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGD-GTLRKNPNIWKEGWKTQRALGLHALQLRI 278 (375)
T ss_pred HHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCC-cccccCchHhhhhhhhhhccCChHHHHHH
Confidence 3444443 24445667777665442 2345689999999999995 431111223222 2 233467
Q ss_pred HHhhHhcccCCCeEEEEecCCCCCCcccHHHHH
Q 016441 136 FRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELA 168 (389)
Q Consensus 136 F~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LA 168 (389)
+.++.++|++||.+.-+.|...|-..=.++..|
T Consensus 279 L~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~ 311 (375)
T KOG2198|consen 279 LRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEA 311 (375)
T ss_pred HHHHHHHhcCCCEEEEeccCCCchhhHHHHHHH
Confidence 889999999999999999999986554444433
No 169
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=52.74 E-value=68 Score=31.14 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=55.9
Q ss_pred CCCCCeEEEEecCChhHH-HHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC-CCc
Q 016441 21 YSSNHQILLVGEGDFSFS-LCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH-PDL 98 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFS-lSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~-~~L 98 (389)
-.++++||+.|.|...-. ..+|+..| ...|++|+-.. +.++.+++.|+...+..+.....+. ..+
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~------------~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~ 224 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINS------------EKLALAKSLGAMQTFNSREMSAPQIQSVL 224 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCH------------HHHHHHHHcCCceEecCcccCHHHHHHHh
Confidence 356789999998886644 34566665 23466664321 2344566778754443322110000 012
Q ss_pred CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
....+|.+||+ .+|. . ..+..+.++|+++|.|.+-
T Consensus 225 ~~~~~d~~v~d--~~G~---~--------------~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 225 RELRFDQLILE--TAGV---P--------------QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred cCCCCCeEEEE--CCCC---H--------------HHHHHHHHHhhcCCEEEEE
Confidence 33568877887 3442 1 2345567888999997754
No 170
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=52.47 E-value=1.2e+02 Score=27.92 Aligned_cols=120 Identities=16% Similarity=-0.010 Sum_probs=66.5
Q ss_pred cccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCC
Q 016441 17 WIKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHP 96 (389)
Q Consensus 17 ~~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~ 96 (389)
++.++-.+.++|=++=|.=+|++.++.. | +..+ |..|......+ .++.|++.+.-.+-.-++.-|+.+.-...
T Consensus 43 ~l~~~~~g~~vLDLfaGsG~lglea~sr-g-a~~v--~~vE~~~~a~~---~~~~N~~~~~~~~~~~~~~~D~~~~l~~~ 115 (189)
T TIGR00095 43 ILRPEIQGAHLLDVFAGSGLLGEEALSR-G-AKVA--FLEEDDRKANQ---TLKENLALLKSGEQAEVVRNSALRALKFL 115 (189)
T ss_pred HHHHhcCCCEEEEecCCCcHHHHHHHhC-C-CCEE--EEEeCCHHHHH---HHHHHHHHhCCcccEEEEehhHHHHHHHh
Confidence 4445556778888877777888877765 3 3344 44553333332 36778877754322234666774421111
Q ss_pred CcCCCC-cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCC
Q 016441 97 DLRTRK-FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTV 157 (389)
Q Consensus 97 ~Lk~~~-FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 157 (389)
.+... ||.|+.+=|. +. . ...+++..... ..+|+++|-|.+.+....
T Consensus 116 -~~~~~~~dvv~~DPPy-~~-~---------~~~~~l~~l~~--~~~l~~~~iiv~E~~~~~ 163 (189)
T TIGR00095 116 -AKKPTFDNVIYLDPPF-FN-G---------ALQALLELCEN--NWILEDTVLIVVEEDREP 163 (189)
T ss_pred -hccCCCceEEEECcCC-CC-C---------cHHHHHHHHHH--CCCCCCCeEEEEEecCCC
Confidence 11233 5555555555 32 1 12344543333 468999999999886653
No 171
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=52.00 E-value=21 Score=35.55 Aligned_cols=67 Identities=19% Similarity=0.351 Sum_probs=40.6
Q ss_pred CCCCCCeEEEEecCChhHHHH-HHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCC
Q 016441 20 HYSSNHQILLVGEGDFSFSLC-LALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMEL 94 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFSFSlS-La~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~ 94 (389)
.+-...++.++||++...+++ +...+|-....++|.........+ +..|...+..|+.+.|..++.+
T Consensus 275 ~~l~g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~d~~~~~~ 342 (399)
T cd00316 275 EYLGGKKVAIFGDGDLLLALARFLLELGMEVVAAGTTFGHKADYER--------REELLGEGTEVVDDGDLEELEE 342 (399)
T ss_pred HHhcCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHH--------HHHhcCCCCEEEeCCCHHHHHH
Confidence 445688999999998877766 234466433445554444332211 4556666777777766666554
No 172
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=51.70 E-value=17 Score=34.87 Aligned_cols=85 Identities=21% Similarity=0.416 Sum_probs=47.1
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCC-----------CcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCC
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSA-----------SNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATT 91 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~-----------~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATk 91 (389)
++++|+| |.|.. .+|...++.. .||.|-..|.++.+. +|. ..+++.+... +...+-++.+..
T Consensus 28 g~~vLlv-d~D~~--~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 101 (254)
T cd00550 28 GKKVLLV-STDPA--HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALE-EYR--QEVLEPIEANLLLEMLKGILEEE 101 (254)
T ss_pred CCCceEE-eCCCc--ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHH-HHH--HHHHHHHHhhccchhHHHHHHHH
Confidence 5788888 67774 4555554322 467777777655554 443 3355555542 222222222222
Q ss_pred CCCCCC-------------cCCCCcceEEEcCCCCCC
Q 016441 92 MELHPD-------------LRTRKFDRIIFNFPHAGF 115 (389)
Q Consensus 92 L~~~~~-------------Lk~~~FDrIIFNFPH~G~ 115 (389)
+.. +. ++...||+||++-|-+|.
T Consensus 102 ~~~-Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~ 137 (254)
T cd00550 102 LES-PGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGH 137 (254)
T ss_pred hcC-CCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHH
Confidence 221 11 134579999999999883
No 173
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.68 E-value=1e+02 Score=28.67 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=42.9
Q ss_pred CCCeEEEEecCC-hhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGD-FSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGD-FSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L-- 98 (389)
+++.+|+.|=++ =.--+++|+++ ..+.+|+.++.+. .+ .+.++++.... ...+.+|.++..+...+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~--~~-------~~~~~~~~~~~-~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND--RM-------KKSLQKLVDEE-DLLVECDVASDESIERAFA 75 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch--HH-------HHHHHhhccCc-eeEEeCCCCCHHHHHHHHH
Confidence 356899999763 22333333333 1356788887652 22 12234443322 34577898876543211
Q ss_pred ----CCCCcceEEEcC
Q 016441 99 ----RTRKFDRIIFNF 110 (389)
Q Consensus 99 ----k~~~FDrIIFNF 110 (389)
+..++|.+|.|-
T Consensus 76 ~~~~~~g~iD~lv~nA 91 (252)
T PRK06079 76 TIKERVGKIDGIVHAI 91 (252)
T ss_pred HHHHHhCCCCEEEEcc
Confidence 126799999884
No 174
>PRK06701 short chain dehydrogenase; Provisional
Probab=51.62 E-value=1e+02 Score=29.61 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=42.7
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
+.+||++|-+.+ -..+|++.+. .+..|+.++.+..+.+. ...+.++..|..+ .+.+|+++......+
T Consensus 46 ~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 46 GKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDAN-------ETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHH-------HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 467999996542 2344443331 24567777665433221 2234455566544 567888875542211
Q ss_pred ---CCCCcceEEEc
Q 016441 99 ---RTRKFDRIIFN 109 (389)
Q Consensus 99 ---k~~~FDrIIFN 109 (389)
...+.|.||.|
T Consensus 118 i~~~~~~iD~lI~~ 131 (290)
T PRK06701 118 TVRELGRLDILVNN 131 (290)
T ss_pred HHHHcCCCCEEEEC
Confidence 12468988876
No 175
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=51.44 E-value=1.8e+02 Score=28.09 Aligned_cols=141 Identities=18% Similarity=0.234 Sum_probs=83.0
Q ss_pred CCCCCC-eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC-
Q 016441 20 HYSSNH-QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD- 97 (389)
Q Consensus 20 ~Yss~~-rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~- 97 (389)
.+.... +||=||=|.=-=+.-+|+++. ...--.|-.|.. .. +.....+++-...++.-=..+|+++-.....
T Consensus 21 ~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~--~~---~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~ 94 (204)
T PF06080_consen 21 YLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDN--LR---PSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL 94 (204)
T ss_pred HhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChH--HH---hhHHHHHHhcCCcccCCCeEeecCCCCCcccc
Confidence 344455 499999999998999998884 222333333322 11 1122333332222222223577777522211
Q ss_pred ---cCCCCcceEEE-cCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE--------------------e
Q 016441 98 ---LRTRKFDRIIF-NFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS--------------------H 153 (389)
Q Consensus 98 ---Lk~~~FDrIIF-NFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT--------------------L 153 (389)
+....||.|+- |.=|+- -...+.++|+.|.++|+++|.+.+= |
T Consensus 95 ~~~~~~~~~D~i~~~N~lHI~-------------p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sL 161 (204)
T PF06080_consen 95 PAPLSPESFDAIFCINMLHIS-------------PWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASL 161 (204)
T ss_pred ccccCCCCcceeeehhHHHhc-------------CHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHH
Confidence 23568998864 444543 2456789999999999998876543 2
Q ss_pred cCCCCCCccc------HHHHHhhCCcEEEEEeeC
Q 016441 154 KTTVPFSNWN------IKELAIGSSLSLIWCSEF 181 (389)
Q Consensus 154 k~g~PY~sWn------Ie~LAa~aGL~L~~~~~F 181 (389)
+...| .|. +.++|+++||.|.+.+.-
T Consensus 162 r~rdp--~~GiRD~e~v~~lA~~~GL~l~~~~~M 193 (204)
T PF06080_consen 162 RSRDP--EWGIRDIEDVEALAAAHGLELEEDIDM 193 (204)
T ss_pred hcCCC--CcCccCHHHHHHHHHHCCCccCccccc
Confidence 22233 344 445899999999886543
No 176
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=51.14 E-value=66 Score=27.23 Aligned_cols=81 Identities=23% Similarity=0.237 Sum_probs=49.2
Q ss_pred eEEEEecCC---hhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 26 QILLVGEGD---FSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 26 rILLVGEGD---FSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
.+|++|-+. .+.+..|+++ | +..|+.++.+ .+.+...+.+++|++.|..+ ....|.++......+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~-g-~~~v~~~~r~------~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARR-G-ARVVILTSRS------EDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-T-TEEEEEEESS------CHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhc-C-ceEEEEeeec------ccccccccccccccccccccccccccccccccccccccc
Confidence 467777543 3444445544 2 4577888777 11233455678888887543 345887776543211
Q ss_pred ---CCCCcceEEEcCCCCC
Q 016441 99 ---RTRKFDRIIFNFPHAG 114 (389)
Q Consensus 99 ---k~~~FDrIIFNFPH~G 114 (389)
+...+|.+|.|-....
T Consensus 74 ~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHHSSESEEEEECSCTT
T ss_pred ccccccccccccccccccc
Confidence 2478999999977766
No 177
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.77 E-value=1.4e+02 Score=27.07 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=45.5
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
+.+||++|=+. .--.+|++.+- .+.+++.++..+.+.+ ...+..+++.|..+ .+.+|.+.......+
T Consensus 6 ~~~vlitGasg-~iG~~l~~~l~~~g~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (252)
T PRK06077 6 DKVVVVTGSGR-GIGRAIAVRLAKEGSLVVVNAKKRAEEM-------NETLKMVKENGGEGIGVLADVSTREGCETLAKA 77 (252)
T ss_pred CcEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCChHHH-------HHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHH
Confidence 46899999544 33555655542 3456766554443333 22345566666543 567888776533211
Q ss_pred ---CCCCcceEEEcCC
Q 016441 99 ---RTRKFDRIIFNFP 111 (389)
Q Consensus 99 ---k~~~FDrIIFNFP 111 (389)
.....|.||+|=-
T Consensus 78 ~~~~~~~~d~vi~~ag 93 (252)
T PRK06077 78 TIDRYGVADILVNNAG 93 (252)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246899998864
No 178
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.41 E-value=1.3e+02 Score=28.64 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=41.4
Q ss_pred CCCeEEEEecC---ChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCC
Q 016441 23 SNHQILLVGEG---DFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPD 97 (389)
Q Consensus 23 s~~rILLVGEG---DFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~ 97 (389)
+++++|+.|=+ ..-.+ +|+.+ ..+.+|+.+..+ +.+. +.+++|.+ .|..+.+.+|.++..+...
T Consensus 9 ~~k~~lItGas~~~GIG~a--ia~~la~~G~~V~l~~r~--~~~~-------~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 77 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWG--IAKACRAAGAELAFTYQG--DALK-------KRVEPLAAELGAFVAGHCDVTDEASIDA 77 (272)
T ss_pred cCCEEEEECCCCCCcHHHH--HHHHHHHCCCEEEEEcCc--hHHH-------HHHHHHHHhcCCceEEecCCCCHHHHHH
Confidence 34679999964 34333 33332 135677776543 1121 12333322 2544557788887654322
Q ss_pred c------CCCCcceEEEcC
Q 016441 98 L------RTRKFDRIIFNF 110 (389)
Q Consensus 98 L------k~~~FDrIIFNF 110 (389)
+ +..+.|.+|.|-
T Consensus 78 ~~~~~~~~~g~iD~lv~nA 96 (272)
T PRK08159 78 VFETLEKKWGKLDFVVHAI 96 (272)
T ss_pred HHHHHHHhcCCCcEEEECC
Confidence 1 125789999884
No 179
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.17 E-value=1.3e+02 Score=28.09 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=42.2
Q ss_pred CCCeEEEEecCC-hhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCCCc-
Q 016441 23 SNHQILLVGEGD-FSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHPDL- 98 (389)
Q Consensus 23 s~~rILLVGEGD-FSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~~L- 98 (389)
+++.+|+.|=+. ---.+++|+.+ ..+.+|+.+..+ +.+ ++.+++|.+. |....+.+|+++..+...+
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~--~~~-------~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~ 77 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS--EVL-------EKRVKPLAEEIGCNFVSELDVTNPKSISNLF 77 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc--hHH-------HHHHHHHHHhcCCceEEEccCCCHHHHHHHH
Confidence 356789999863 11333333332 124567766543 211 1223444332 5545678899886543221
Q ss_pred -----CCCCcceEEEcC
Q 016441 99 -----RTRKFDRIIFNF 110 (389)
Q Consensus 99 -----k~~~FDrIIFNF 110 (389)
+..+.|.+|.|-
T Consensus 78 ~~~~~~~g~iDilVnna 94 (260)
T PRK06603 78 DDIKEKWGSFDFLLHGM 94 (260)
T ss_pred HHHHHHcCCccEEEEcc
Confidence 126799988875
No 180
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=49.87 E-value=1.1e+02 Score=32.81 Aligned_cols=132 Identities=20% Similarity=0.307 Sum_probs=78.7
Q ss_pred CCCeEEEEecCChhHHHHHHHHh--CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-----CCCEEEeccccCCCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF--GSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-----LGTCILHGVDATTMELH 95 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~--gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-----~Gv~VlfgVDATkL~~~ 95 (389)
...++|++|-|| -+||-+.+ ..-..|+---+|.+-.-..+ . ...+..+.+ --++|+ .=||-+-
T Consensus 289 ~a~~vLvlGGGD---GLAlRellkyP~~~qI~lVdLDP~miela~--~-~~vlr~~N~~sf~dpRv~Vv-~dDAf~w--- 358 (508)
T COG4262 289 GARSVLVLGGGD---GLALRELLKYPQVEQITLVDLDPRMIELAS--H-ATVLRALNQGSFSDPRVTVV-NDDAFQW--- 358 (508)
T ss_pred ccceEEEEcCCc---hHHHHHHHhCCCcceEEEEecCHHHHHHhh--h-hhHhhhhccCCccCCeeEEE-eccHHHH---
Confidence 356899999999 34443332 22357888888854211111 0 112222221 123332 2233321
Q ss_pred CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCC----CcccHHHHHhhC
Q 016441 96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPF----SNWNIKELAIGS 171 (389)
Q Consensus 96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY----~sWnIe~LAa~a 171 (389)
..-....||.||-++|..-..+ .-|--=..|+.+++.-|+++|.+.|- .|.|| .-|.|.+--+++
T Consensus 359 lr~a~~~fD~vIVDl~DP~tps---------~~rlYS~eFY~ll~~~l~e~Gl~VvQ--ags~y~tp~vfw~i~aTik~A 427 (508)
T COG4262 359 LRTAADMFDVVIVDLPDPSTPS---------IGRLYSVEFYRLLSRHLAETGLMVVQ--AGSPYFTPRVFWRIDATIKSA 427 (508)
T ss_pred HHhhcccccEEEEeCCCCCCcc---------hhhhhhHHHHHHHHHhcCcCceEEEe--cCCCccCCceeeeehhHHHhC
Confidence 1112368999999999886322 12223458999999999999987764 34455 469999999999
Q ss_pred CcEE
Q 016441 172 SLSL 175 (389)
Q Consensus 172 GL~L 175 (389)
|+..
T Consensus 428 G~~~ 431 (508)
T COG4262 428 GYRV 431 (508)
T ss_pred ccee
Confidence 9754
No 181
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=49.75 E-value=15 Score=37.55 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=19.8
Q ss_pred CCCCCeEEEEecCChhHHHH--HHHHhCCCCcEEec
Q 016441 21 YSSNHQILLVGEGDFSFSLC--LALAFGSASNICAS 54 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlS--La~~~gs~~nLvAT 54 (389)
+-.+.||.++||++..++++ |.+ +| ..++++
T Consensus 273 ~l~Gkrv~i~g~~~~~~~la~~L~e-lG--m~vv~~ 305 (396)
T cd01979 273 LLRGKSIFFMGDNLLEIPLARFLTR-CG--MIVVEV 305 (396)
T ss_pred hhcCCEEEEECCchHHHHHHHHHHH-CC--CEEEee
Confidence 34678999999999555544 444 55 444443
No 182
>PRK13699 putative methylase; Provisional
Probab=49.63 E-value=64 Score=30.83 Aligned_cols=93 Identities=12% Similarity=0.165 Sum_probs=56.7
Q ss_pred EEEeccccCCCCCCCCcCCCCcceEEEcCCCC-CCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCC
Q 016441 82 CILHGVDATTMELHPDLRTRKFDRIIFNFPHA-GFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFS 160 (389)
Q Consensus 82 ~VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~-G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~ 160 (389)
++++| ||.++-. .+....+|.||..=|=. |.+...+..-......+.+..+|..+..+|+++|.+.+- .
T Consensus 3 ~l~~g-D~le~l~--~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if-------~ 72 (227)
T PRK13699 3 RFILG-NCIDVMA--RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF-------Y 72 (227)
T ss_pred eEEec-hHHHHHH--hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE-------e
Confidence 34444 6655322 25668899999998874 321110000000123467789999999999998876542 2
Q ss_pred ccc----HHHHHhhCCcEEEEEeeCCCC
Q 016441 161 NWN----IKELAIGSSLSLIWCSEFKIE 184 (389)
Q Consensus 161 sWn----Ie~LAa~aGL~L~~~~~F~~~ 184 (389)
.|+ +.....++|+.+....-.++.
T Consensus 73 ~~~~~~~~~~al~~~GF~l~~~IiW~K~ 100 (227)
T PRK13699 73 GWNRVDRFMAAWKNAGFSVVGHLVFTKN 100 (227)
T ss_pred ccccHHHHHHHHHHCCCEEeeEEEEECC
Confidence 232 344567889999988877654
No 183
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=48.65 E-value=1.6e+02 Score=26.93 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=44.8
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
+.++|+.|=+. ....++++.+ ..+.+++.+..+. +. ..+..++|+..+..+ .+.+|.++...-..+
T Consensus 9 ~k~~lItGas~-giG~~ia~~L~~~G~~vvl~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 9 GKNILITGSAQ-GIGFLLATGLAEYGAEIIINDITA-ER-------AELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHcCCEEEEEcCCH-HH-------HHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHH
Confidence 55788888544 4444444443 1246788877653 21 223455666666543 567788775432111
Q ss_pred ---CCCCcceEEEcCC
Q 016441 99 ---RTRKFDRIIFNFP 111 (389)
Q Consensus 99 ---k~~~FDrIIFNFP 111 (389)
+..++|.||.|=-
T Consensus 80 ~~~~~~~id~vi~~ag 95 (254)
T PRK08085 80 IEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHhcCCCCEEEECCC
Confidence 1256899998853
No 184
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=48.54 E-value=43 Score=35.34 Aligned_cols=88 Identities=15% Similarity=0.260 Sum_probs=55.1
Q ss_pred CCCCeEEEEecCC-hhHHHHHHHHhCCCCcEEeccccCHHHHHHh-----hhhHHHHHHHHHhCCCE-EEeccccCCCCC
Q 016441 22 SSNHQILLVGEGD-FSFSLCLALAFGSASNICASSLDSYDDVIQK-----YKRAKSNLDNLKKLGTC-ILHGVDATTMEL 94 (389)
Q Consensus 22 ss~~rILLVGEGD-FSFSlSLa~~~gs~~nLvATSlDSeeeL~~K-----Y~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~ 94 (389)
...+++|++|=.+ ++.+.++|++++.+.++++++++.... ..+ |-+++.-.+.+++.|.. ..+..|+++-..
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al~~GA~Vi~v~~~~~~~-~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAFGAGADTLGVFFEKPGT-EKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHHHcCCeEEEEecCcchh-hhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 5567899999876 444443788886678888988864322 222 11233444566677865 457889998554
Q ss_pred CCCc------CCCCcceEEEcC
Q 016441 95 HPDL------RTRKFDRIIFNF 110 (389)
Q Consensus 95 ~~~L------k~~~FDrIIFNF 110 (389)
...+ ..++.|.+|.|-
T Consensus 118 v~~lie~I~e~~G~IDiLVnSa 139 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSL 139 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 3211 126789999774
No 185
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.92 E-value=1.3e+02 Score=27.96 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=40.8
Q ss_pred CCeEEEEecCC-hhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCCCc--
Q 016441 24 NHQILLVGEGD-FSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHPDL-- 98 (389)
Q Consensus 24 ~~rILLVGEGD-FSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~~L-- 98 (389)
++.+|+.|=++ =.--+++|+.+ ..+.+|+.+..+... .+.++++.+ .+..+.+.+|+++..+...+
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA---------RPYVEPLAEELDAPIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh---------HHHHHHHHHhhccceEEecCcCCHHHHHHHHH
Confidence 56789998543 12233333332 124578777665321 112222221 23345678899886544221
Q ss_pred ----CCCCcceEEEcC
Q 016441 99 ----RTRKFDRIIFNF 110 (389)
Q Consensus 99 ----k~~~FDrIIFNF 110 (389)
+..+.|.+|.|=
T Consensus 81 ~~~~~~g~ld~lv~nA 96 (258)
T PRK07533 81 RIAEEWGRLDFLLHSI 96 (258)
T ss_pred HHHHHcCCCCEEEEcC
Confidence 125789999883
No 186
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.87 E-value=1.3e+02 Score=28.77 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=41.2
Q ss_pred CCeEEEEecC-----ChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEeccccCCCCCCCC
Q 016441 24 NHQILLVGEG-----DFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-KKLGTCILHGVDATTMELHPD 97 (389)
Q Consensus 24 ~~rILLVGEG-----DFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-r~~Gv~VlfgVDATkL~~~~~ 97 (389)
++.+|+.|=+ .+..++.|++ .+.+|+.+..+. ++.+ .++++ ++.|..+.+.+|.++......
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~---~G~~Vil~~r~~--~~~~-------~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 72 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFE---QGAELAFTYLNE--ALKK-------RVEPIAQELGSDYVYELDVSKPEHFKS 72 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHH---CCCEEEEEecCH--HHHH-------HHHHHHHhcCCceEEEecCCCHHHHHH
Confidence 5689999964 2334444444 246787776552 1111 12222 222433567889988764322
Q ss_pred c------CCCCcceEEEc
Q 016441 98 L------RTRKFDRIIFN 109 (389)
Q Consensus 98 L------k~~~FDrIIFN 109 (389)
+ +..+.|.+|.|
T Consensus 73 ~~~~i~~~~g~iDilVnn 90 (274)
T PRK08415 73 LAESLKKDLGKIDFIVHS 90 (274)
T ss_pred HHHHHHHHcCCCCEEEEC
Confidence 1 12678988887
No 187
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.84 E-value=1.2e+02 Score=28.37 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=42.9
Q ss_pred CCeEEEEecC-ChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEG-DFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEG-DFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L--- 98 (389)
++++|+.|=| .=-.-+++|+.+ ..+.+|+.+..+..++..++ ..+++.. ....+.+|+++..+...+
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~------~~~~~~~--~~~~~~~Dv~~~~~i~~~~~~ 78 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTER------IAKRLPE--PAPVLELDVTNEEHLASLADR 78 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHH------HHHhcCC--CCcEEeCCCCCHHHHHHHHHH
Confidence 5689999953 233444444443 13568888877542222221 1122221 233577898886543221
Q ss_pred ---CCCCcceEEEcC
Q 016441 99 ---RTRKFDRIIFNF 110 (389)
Q Consensus 99 ---k~~~FDrIIFNF 110 (389)
...++|.+|.|=
T Consensus 79 ~~~~~g~iD~li~nA 93 (256)
T PRK07889 79 VREHVDGLDGVVHSI 93 (256)
T ss_pred HHHHcCCCcEEEEcc
Confidence 126799998874
No 188
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=47.02 E-value=69 Score=30.31 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=55.1
Q ss_pred CCCCCCeEEEEe-cCChh-HHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC-C
Q 016441 20 HYSSNHQILLVG-EGDFS-FSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH-P 96 (389)
Q Consensus 20 ~Yss~~rILLVG-EGDFS-FSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~-~ 96 (389)
...++++||+.| .|..- ++..||+..| ..+++|+-. .++.+.|+++|+.-++.-+...+.+. .
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s------------~~~~~~l~~~Ga~~vi~~~~~~~~~~v~ 205 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGS------------DDKVAWLKELGFDAVFNYKTVSLEEALK 205 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCC------------HHHHHHHHHcCCCEEEeCCCccHHHHHH
Confidence 345788999998 56654 5566788875 468887632 23456677788754433221111100 0
Q ss_pred CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441 97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV 151 (389)
Q Consensus 97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV 151 (389)
.+..+.+|.|+ + .+|. .-+..+.++|+++|.+.+
T Consensus 206 ~~~~~gvd~vl-d--~~g~------------------~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 206 EAAPDGIDCYF-D--NVGG------------------EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred HHCCCCcEEEE-E--CCCH------------------HHHHHHHHhhccCCEEEE
Confidence 11224578665 4 3552 123556677899998754
No 189
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=46.91 E-value=55 Score=31.96 Aligned_cols=111 Identities=13% Similarity=0.119 Sum_probs=65.1
Q ss_pred ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeccccCCC-CCC
Q 016441 18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-KLGTCILHGVDATTM-ELH 95 (389)
Q Consensus 18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-~~Gv~VlfgVDATkL-~~~ 95 (389)
+......++||=||=+-=-=++++|+..+....|++.-.|. +.. .-|+.|++..- ...++++.| ||.+. .+-
T Consensus 74 l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~--~~~---~~Ar~~~~~ag~~~~I~~~~G-~a~e~L~~l 147 (247)
T PLN02589 74 LLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINR--ENY---ELGLPVIQKAGVAHKIDFREG-PALPVLDQM 147 (247)
T ss_pred HHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCH--HHH---HHHHHHHHHCCCCCceEEEec-cHHHHHHHH
Confidence 34556678999999753222466777664444566665553 222 23667776543 223566655 44331 110
Q ss_pred CC-c-CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441 96 PD-L-RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV 151 (389)
Q Consensus 96 ~~-L-k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV 151 (389)
.. . ....||.|..+- ++..-..+|..|.++|++||-|.+
T Consensus 148 ~~~~~~~~~fD~iFiDa-----------------dK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 148 IEDGKYHGTFDFIFVDA-----------------DKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HhccccCCcccEEEecC-----------------CHHHhHHHHHHHHHhcCCCeEEEE
Confidence 00 0 125799998862 122345888999999999998775
No 190
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=46.67 E-value=69 Score=26.04 Aligned_cols=111 Identities=18% Similarity=0.142 Sum_probs=64.1
Q ss_pred EEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCcCCCCcce
Q 016441 27 ILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDLRTRKFDR 105 (389)
Q Consensus 27 ILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~Lk~~~FDr 105 (389)
+|..=||.-++..-++..+. ..++-||-+=+-.. .+.+ .+.+++|.+.|..|- |+.+-..+
T Consensus 9 ~ltfDdg~~~~~~~~~~~l~-~~~i~at~fv~~~~-~~~~---~~~l~~l~~~G~ei~~H~~~H~~~------------- 70 (123)
T PF01522_consen 9 ALTFDDGYRDNYDRLLPLLK-KYGIPATFFVIGSW-VERY---PDQLRELAAAGHEIGNHGWSHPNL------------- 70 (123)
T ss_dssp EEEEESHCHTHHHHHHHHHH-HTT--EEEEE-HHH-HHHH---HHHHHHHHHTT-EEEEE-SSSSCG-------------
T ss_pred EEEEecCchhhHHHHHHHHH-hcccceeeeecccc-cccc---cccchhHHHHHHHHHhcCCccccc-------------
Confidence 56666666577777765552 34677887776554 3332 567888888997664 55332221
Q ss_pred EEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCc--ccHHHHHhhCCcEE
Q 016441 106 IIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSN--WNIKELAIGSSLSL 175 (389)
Q Consensus 106 IIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s--WnIe~LAa~aGL~L 175 (389)
.....++..+.|...++.|...+-.....++ .||.. -++..++++.||..
T Consensus 71 --------~~~~~~~~~~ei~~~~~~l~~~~g~~~~~f~------------~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 71 --------STLSPEELRREIERSREILEEITGRPPKGFR------------YPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp --------GGS-HHHHHHHHHHHHHHHHHHHSSEESEEE-------------GGGEECHHHHHHHHHTT-EE
T ss_pred --------ccCCHHHHHHHHHHHHHHHHHHhCCCCcEEE------------CCCCCCCHHHHHHHHHcCCCc
Confidence 3234566777888888888888743333332 25543 45667888889875
No 191
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=46.53 E-value=1.9e+02 Score=28.26 Aligned_cols=90 Identities=21% Similarity=0.240 Sum_probs=54.0
Q ss_pred CCCCCCeEEEEecCChh-HHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc
Q 016441 20 HYSSNHQILLVGEGDFS-FSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL 98 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFS-FSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L 98 (389)
...++++||+.|-|-.. ++..+|+..| .++++|+.+. +.++.++++|+..... .+..
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~------------~~~~~a~~~Ga~~vi~--~~~~------ 219 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGA------------AARRLALALGAASAGG--AYDT------ 219 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCCh------------HHHHHHHHhCCceecc--cccc------
Confidence 34568899999976543 3444567665 4688875542 1356678888865543 2211
Q ss_pred CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441 99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV 151 (389)
Q Consensus 99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV 151 (389)
....+|.++- + .|. ..-+..+.++|+++|.+.+
T Consensus 220 ~~~~~d~~i~-~--~~~-----------------~~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 220 PPEPLDAAIL-F--APA-----------------GGLVPPALEALDRGGVLAV 252 (329)
T ss_pred CcccceEEEE-C--CCc-----------------HHHHHHHHHhhCCCcEEEE
Confidence 1235776542 2 221 1346678888999999865
No 192
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=45.44 E-value=2.3e+02 Score=25.43 Aligned_cols=96 Identities=21% Similarity=0.259 Sum_probs=51.3
Q ss_pred CCCCCeEEEEecCChhHHHH---HHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCC-
Q 016441 21 YSSNHQILLVGEGDFSFSLC---LALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHP- 96 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlS---La~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~- 96 (389)
..++.+||++|-|. ...+ ++++.| .++++++.+.. ..+.+++.|+...+..+-.......
T Consensus 132 ~~~~~~vli~g~~~--~G~~~~~~a~~~g--~~v~~~~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~ 195 (271)
T cd05188 132 LKPGDTVLVLGAGG--VGLLAAQLAKAAG--ARVIVTDRSDE------------KLELAKELGADHVIDYKEEDLEEELR 195 (271)
T ss_pred CCCCCEEEEECCCH--HHHHHHHHHHHcC--CeEEEEcCCHH------------HHHHHHHhCCceeccCCcCCHHHHHH
Confidence 36788999999987 4444 344544 67888876531 2333455665443322211111000
Q ss_pred CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
......+|.|+-+.+.. .....+...|+++|.+...
T Consensus 196 ~~~~~~~d~vi~~~~~~--------------------~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 196 LTGGGGADVVIDAVGGP--------------------ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred HhcCCCCCEEEECCCCH--------------------HHHHHHHHhcccCCEEEEE
Confidence 11245799988543211 1234455677888876643
No 193
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=45.30 E-value=86 Score=30.04 Aligned_cols=97 Identities=15% Similarity=0.248 Sum_probs=55.8
Q ss_pred CCCCCCeEEEEec-CCh-hHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccC-CCCCC-
Q 016441 20 HYSSNHQILLVGE-GDF-SFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDAT-TMELH- 95 (389)
Q Consensus 20 ~Yss~~rILLVGE-GDF-SFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDAT-kL~~~- 95 (389)
...++++||+.|- |-. .++..||+..| ..+++|+-. .+..+.++++|+...+.-+-. ...+.
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s------------~~~~~~~~~lGa~~vi~~~~~~~~~~~~ 200 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGS------------DEKVAYLKKLGFDVAFNYKTVKSLEETL 200 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCC------------HHHHHHHHHcCCCEEEeccccccHHHHH
Confidence 4567899999993 433 45566778775 468877532 224566777888554433221 11110
Q ss_pred CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441 96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV 151 (389)
Q Consensus 96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV 151 (389)
..+.++.+|.|+ + .+|. .-+..+.++|+++|.|.+
T Consensus 201 ~~~~~~gvdvv~-d--~~G~------------------~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 201 KKASPDGYDCYF-D--NVGG------------------EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred HHhCCCCeEEEE-E--CCCH------------------HHHHHHHHHhCcCcEEEE
Confidence 011234588665 4 3453 123556678899998874
No 194
>PRK05599 hypothetical protein; Provisional
Probab=44.73 E-value=61 Score=30.01 Aligned_cols=76 Identities=16% Similarity=0.297 Sum_probs=46.6
Q ss_pred eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EEEeccccCCCCCCCCc-----
Q 016441 26 QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT--CILHGVDATTMELHPDL----- 98 (389)
Q Consensus 26 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv--~VlfgVDATkL~~~~~L----- 98 (389)
.+|+.|=+. ..-+++|+.+..+.+|+.++.+. +. .++-.++|++.|. ...+.+|+++......+
T Consensus 2 ~vlItGas~-GIG~aia~~l~~g~~Vil~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 72 (246)
T PRK05599 2 SILILGGTS-DIAGEIATLLCHGEDVVLAARRP-EA-------AQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQ 72 (246)
T ss_pred eEEEEeCcc-HHHHHHHHHHhCCCEEEEEeCCH-HH-------HHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHH
Confidence 467777543 44555555554467888887653 22 2334566666663 34578999987654321
Q ss_pred -CCCCcceEEEcC
Q 016441 99 -RTRKFDRIIFNF 110 (389)
Q Consensus 99 -k~~~FDrIIFNF 110 (389)
...+.|.+|.|.
T Consensus 73 ~~~g~id~lv~na 85 (246)
T PRK05599 73 ELAGEISLAVVAF 85 (246)
T ss_pred HhcCCCCEEEEec
Confidence 125789999885
No 195
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=44.47 E-value=1.1e+02 Score=31.13 Aligned_cols=129 Identities=18% Similarity=0.261 Sum_probs=69.0
Q ss_pred CeEE--EEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCC------
Q 016441 25 HQIL--LVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHP------ 96 (389)
Q Consensus 25 ~rIL--LVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~------ 96 (389)
.++| ..|-|.||+ +|++.. ..++|.-.+. ...+ .+++|++...-.+++ .+.-||.+.-...
T Consensus 208 ~~vLDl~~G~G~~sl--~la~~~---~~v~~vE~~~--~ai~---~a~~N~~~~~~~~v~-~~~~d~~~~l~~~~~~~~~ 276 (362)
T PRK05031 208 GDLLELYCGNGNFTL--ALARNF---RRVLATEISK--PSVA---AAQYNIAANGIDNVQ-IIRMSAEEFTQAMNGVREF 276 (362)
T ss_pred CeEEEEeccccHHHH--HHHhhC---CEEEEEECCH--HHHH---HHHHHHHHhCCCcEE-EEECCHHHHHHHHhhcccc
Confidence 4574 555666555 777653 3566665553 2222 366676554322333 3445665521110
Q ss_pred ------CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhh
Q 016441 97 ------DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIG 170 (389)
Q Consensus 97 ------~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~ 170 (389)
+.+..+||.|+.+=|-.|. ..+++.... ++.+-|+|+..-.. -.=++..|.+
T Consensus 277 ~~~~~~~~~~~~~D~v~lDPPR~G~------------~~~~l~~l~-------~~~~ivyvSC~p~t--larDl~~L~~- 334 (362)
T PRK05031 277 NRLKGIDLKSYNFSTIFVDPPRAGL------------DDETLKLVQ-------AYERILYISCNPET--LCENLETLSQ- 334 (362)
T ss_pred cccccccccCCCCCEEEECCCCCCC------------cHHHHHHHH-------ccCCEEEEEeCHHH--HHHHHHHHcC-
Confidence 0012369999999998763 122222221 13566666654311 1123455542
Q ss_pred CCcEEEEEeeCCCCCCCCC
Q 016441 171 SSLSLIWCSEFKIEDYPAY 189 (389)
Q Consensus 171 aGL~L~~~~~F~~~~YPGY 189 (389)
||.+.+..+|| .||.=
T Consensus 335 -gY~l~~v~~~D--mFPqT 350 (362)
T PRK05031 335 -THKVERFALFD--QFPYT 350 (362)
T ss_pred -CcEEEEEEEcc--cCCCC
Confidence 89999999998 67743
No 196
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=44.00 E-value=2.1e+02 Score=28.10 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=64.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCcCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDLRT 100 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~Lk~ 100 (389)
.+..+||=+|=|+=.+++.|++++..+.. -|.+|-.+++++. +..++.. ...+++|. ..-|.++.-....-..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~--~~~iDiS~~mL~~---a~~~l~~-~~p~~~v~~i~gD~~~~~~~~~~~~ 135 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPAR--YVPIDISADALKE---SAAALAA-DYPQLEVHGICADFTQPLALPPEPA 135 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCe--EEEEECCHHHHHH---HHHHHHh-hCCCceEEEEEEcccchhhhhcccc
Confidence 45678999999999999999988632334 4667744444432 4344332 01345543 2337665321110000
Q ss_pred CCcceEEE--cCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441 101 RKFDRIIF--NFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT 156 (389)
Q Consensus 101 ~~FDrIIF--NFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 156 (389)
.. +++++ ..+ .|. ...+-...||+.+...|+|||.+.|..-..
T Consensus 136 ~~-~~~~~~~gs~-~~~-----------~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 136 AG-RRLGFFPGST-IGN-----------FTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred cC-CeEEEEeccc-ccC-----------CCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 11 33332 222 111 122235689999999999999998876543
No 197
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=43.61 E-value=32 Score=35.45 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=79.9
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLD-SYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD-SeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
+-+++|+||+||==+-+-.++| .+-.||+--..| .-.++.++|-.+..+ --...-+.++-| |+-.+-+. ++.+
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~--gy~~~~v~l~iG-DG~~fl~~--~~~~ 194 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLAC--GYEGKKVKLLIG-DGFLFLED--LKEN 194 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhc--ccCCCceEEEec-cHHHHHHH--hccC
Confidence 3467999999998777777766 444566555544 334555555322111 123345777777 88776543 3568
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhh
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIG 170 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~ 170 (389)
.||.||-.==-. ..-........||....+-|+++|.+. +. ++ +-|=..+++++
T Consensus 195 ~~dVii~dssdp----------vgpa~~lf~~~~~~~v~~aLk~dgv~~-~q--~e--c~wl~~~~i~e 248 (337)
T KOG1562|consen 195 PFDVIITDSSDP----------VGPACALFQKPYFGLVLDALKGDGVVC-TQ--GE--CMWLHLDYIKE 248 (337)
T ss_pred CceEEEEecCCc----------cchHHHHHHHHHHHHHHHhhCCCcEEE-Ee--cc--eehHHHHHHHH
Confidence 899999753222 223455567899999999999888654 22 22 56777776665
No 198
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=43.43 E-value=49 Score=30.60 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=44.8
Q ss_pred eEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc------
Q 016441 26 QILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL------ 98 (389)
Q Consensus 26 rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L------ 98 (389)
+||+.|-+. ..-+++|+.+. .+.+|+.++.+. +.+ .+..++|++.+....+.+|.++......+
T Consensus 2 ~vlItGas~-gIG~aia~~l~~~G~~V~~~~r~~-~~~-------~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~ 72 (259)
T PRK08340 2 NVLVTASSR-GIGFNVARELLKKGARVVISSRNE-ENL-------EKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWE 72 (259)
T ss_pred eEEEEcCCc-HHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHH
Confidence 688999543 56666666552 346788887653 222 23345555555445678888875432211
Q ss_pred CCCCcceEEEcC
Q 016441 99 RTRKFDRIIFNF 110 (389)
Q Consensus 99 k~~~FDrIIFNF 110 (389)
+..+.|.||.|-
T Consensus 73 ~~g~id~li~na 84 (259)
T PRK08340 73 LLGGIDALVWNA 84 (259)
T ss_pred hcCCCCEEEECC
Confidence 125789999885
No 199
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=43.40 E-value=2e+02 Score=28.16 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=56.2
Q ss_pred CCCCeEEEEecCChh-HHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCC--CCCCCCc
Q 016441 22 SSNHQILLVGEGDFS-FSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATT--MELHPDL 98 (389)
Q Consensus 22 ss~~rILLVGEGDFS-FSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATk--L~~~~~L 98 (389)
..+++||++|=|..- ++..+|+..| ..+++++.... ..+.++.++++|+.+ ||..+ +.+ ..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~---------~~~~~~~~~~~Ga~~---v~~~~~~~~~--~~ 234 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDP---------PDPKADIVEELGATY---VNSSKTPVAE--VK 234 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCC---------CHHHHHHHHHcCCEE---ecCCccchhh--hh
Confidence 467899999987654 5556677765 36888876311 123456678899875 34322 111 01
Q ss_pred CCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441 99 RTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV 151 (389)
Q Consensus 99 k~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV 151 (389)
....+|.||= . +|. . ..+..+..+|+++|.|.+
T Consensus 235 ~~~~~d~vid-~--~g~---~--------------~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 235 LVGEFDLIIE-A--TGV---P--------------PLAFEALPALAPNGVVIL 267 (355)
T ss_pred hcCCCCEEEE-C--cCC---H--------------HHHHHHHHHccCCcEEEE
Confidence 1246886554 2 342 0 245667788999998754
No 200
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=42.86 E-value=2.7e+02 Score=25.56 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=45.1
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
+++||++|=..+ --.+|++.+ ..+..++.++.+.. .+ +...++|++.|..+ .+.+|+++......+
T Consensus 11 ~k~vlVtG~s~g-IG~~la~~l~~~G~~vv~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~ 81 (255)
T PRK06113 11 GKCAIITGAGAG-IGKEIAITFATAGASVVVSDINAD-AA-------NHVVDEIQQLGGQAFACRCDITSEQELSALADF 81 (255)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCeEEEEeCCHH-HH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 578999995443 333344332 12456777765432 11 22344555556543 568898876543211
Q ss_pred ---CCCCcceEEEcCCCC
Q 016441 99 ---RTRKFDRIIFNFPHA 113 (389)
Q Consensus 99 ---k~~~FDrIIFNFPH~ 113 (389)
....+|.||+|--..
T Consensus 82 ~~~~~~~~d~li~~ag~~ 99 (255)
T PRK06113 82 ALSKLGKVDILVNNAGGG 99 (255)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 125689999986543
No 201
>PRK06953 short chain dehydrogenase; Provisional
Probab=41.73 E-value=2.2e+02 Score=25.65 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=39.9
Q ss_pred CeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC----cC
Q 016441 25 HQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD----LR 99 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~----Lk 99 (389)
+++|+.|=.. ....++++++ ..+..|+++..+.+ .+++++..++. .+.+|.++...-.. +.
T Consensus 2 ~~vlvtG~sg-~iG~~la~~L~~~G~~v~~~~r~~~------------~~~~~~~~~~~-~~~~D~~~~~~v~~~~~~~~ 67 (222)
T PRK06953 2 KTVLIVGASR-GIGREFVRQYRADGWRVIATARDAA------------ALAALQALGAE-ALALDVADPASVAGLAWKLD 67 (222)
T ss_pred ceEEEEcCCC-chhHHHHHHHHhCCCEEEEEECCHH------------HHHHHHhccce-EEEecCCCHHHHHHHHHHhc
Confidence 4678888544 2333343333 12456777765521 22344445655 46788887643221 23
Q ss_pred CCCcceEEEcCC
Q 016441 100 TRKFDRIIFNFP 111 (389)
Q Consensus 100 ~~~FDrIIFNFP 111 (389)
..++|.||+|=.
T Consensus 68 ~~~~d~vi~~ag 79 (222)
T PRK06953 68 GEALDAAVYVAG 79 (222)
T ss_pred CCCCCEEEECCC
Confidence 357899988743
No 202
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=41.31 E-value=1.1e+02 Score=32.40 Aligned_cols=131 Identities=19% Similarity=0.243 Sum_probs=78.2
Q ss_pred ccccCCCCCCeE--EEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEec-cccCCC
Q 016441 16 KWIKHYSSNHQI--LLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHG-VDATTM 92 (389)
Q Consensus 16 K~~~~Yss~~rI--LLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vlfg-VDATkL 92 (389)
+|+.. .+++++ |..|=|+||..+| +. ...++++-..... +. .|+.|.+...-.+ |-|. -||.++
T Consensus 287 ~~~~~-~~~~~vlDlYCGvG~f~l~lA--~~---~~~V~gvEi~~~a-V~----~A~~NA~~n~i~N--~~f~~~~ae~~ 353 (432)
T COG2265 287 EWLEL-AGGERVLDLYCGVGTFGLPLA--KR---VKKVHGVEISPEA-VE----AAQENAAANGIDN--VEFIAGDAEEF 353 (432)
T ss_pred HHHhh-cCCCEEEEeccCCChhhhhhc--cc---CCEEEEEecCHHH-HH----HHHHHHHHcCCCc--EEEEeCCHHHH
Confidence 44444 233444 7889999877666 33 4578888776432 22 3677777666555 4443 466665
Q ss_pred CCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHh---
Q 016441 93 ELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAI--- 169 (389)
Q Consensus 93 ~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa--- 169 (389)
..... ....||.||.+=|-.|- +. .|.+...+ +.+..-|+|+- |-..||+
T Consensus 354 ~~~~~-~~~~~d~VvvDPPR~G~-~~---------------~~lk~l~~-~~p~~IvYVSC---------NP~TlaRDl~ 406 (432)
T COG2265 354 TPAWW-EGYKPDVVVVDPPRAGA-DR---------------EVLKQLAK-LKPKRIVYVSC---------NPATLARDLA 406 (432)
T ss_pred hhhcc-ccCCCCEEEECCCCCCC-CH---------------HHHHHHHh-cCCCcEEEEeC---------CHHHHHHHHH
Confidence 44322 45689999999999995 11 22222222 33444555553 3344554
Q ss_pred ---hCCcEEEEEeeCCCCCCCC
Q 016441 170 ---GSSLSLIWCSEFKIEDYPA 188 (389)
Q Consensus 170 ---~aGL~L~~~~~F~~~~YPG 188 (389)
+.|+.+.+..+|| .||.
T Consensus 407 ~L~~~gy~i~~v~~~D--mFP~ 426 (432)
T COG2265 407 ILASTGYEIERVQPFD--MFPH 426 (432)
T ss_pred HHHhCCeEEEEEEEec--cCCC
Confidence 3477788888988 5763
No 203
>PRK06172 short chain dehydrogenase; Provisional
Probab=41.02 E-value=2.4e+02 Score=25.70 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=44.5
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L--- 98 (389)
+.+||++|=+. ....++++.+. .+.+|++++.+.. .+ .+-.+.+++.|.. ..+.+|+++......+
T Consensus 7 ~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 7 GKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAA-GG-------EETVALIREAGGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHH-HH-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 56899998543 44455554431 2457888877632 22 2223445555654 3567898875432111
Q ss_pred ---CCCCcceEEEcCC
Q 016441 99 ---RTRKFDRIIFNFP 111 (389)
Q Consensus 99 ---k~~~FDrIIFNFP 111 (389)
+..+.|.||.|--
T Consensus 78 ~~~~~g~id~li~~ag 93 (253)
T PRK06172 78 TIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1246899998853
No 204
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=40.71 E-value=2e+02 Score=28.56 Aligned_cols=107 Identities=23% Similarity=0.370 Sum_probs=69.4
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHH----------HHhCCCEEEecccc
Q 016441 20 HYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDN----------LKKLGTCILHGVDA 89 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~----------Lr~~Gv~VlfgVDA 89 (389)
|-.++.+.|=||-|-==-|.+.++..+. .-..+--.|-..+|.+. ++.||+. |++.-..++ -=|+
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~-~g~~~~GIEh~~eLVe~---Sk~nl~k~i~~~e~~~~~~~~~l~iv-vGDg 153 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGA-TGGNVHGIEHIPELVEY---SKKNLDKDITTSESSSKLKRGELSIV-VGDG 153 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcC-CCccccchhhhHHHHHH---HHHHHHhhccCchhhhhhccCceEEE-eCCc
Confidence 4567888999999988888888876642 22333455666677652 5556554 333334444 5577
Q ss_pred CCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecC
Q 016441 90 TTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKT 155 (389)
Q Consensus 90 TkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 155 (389)
.+.... ..+||+| |+|..-. +.+++||. .|+++|+|.|-.-+
T Consensus 154 r~g~~e----~a~YDaI-----hvGAaa~-------~~pq~l~d--------qL~~gGrllip~~~ 195 (237)
T KOG1661|consen 154 RKGYAE----QAPYDAI-----HVGAAAS-------ELPQELLD--------QLKPGGRLLIPVGQ 195 (237)
T ss_pred cccCCc----cCCcceE-----EEccCcc-------ccHHHHHH--------hhccCCeEEEeecc
Confidence 776654 3789999 6774222 25667664 58889999987763
No 205
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=40.60 E-value=62 Score=30.00 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=45.7
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L-- 98 (389)
+++++|+.| |.=-.-+++|+++ ..+.+|++++.+..+. ..+.+++.|..+ .+.+|.++......+
T Consensus 7 ~~k~~lItG-as~gIG~aia~~l~~~G~~vv~~~~~~~~~----------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12481 7 NGKVAIITG-CNTGLGQGMAIGLAKAGADIVGVGVAEAPE----------TQAQVEALGRKFHFITADLIQQKDIDSIVS 75 (251)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEecCchHHH----------HHHHHHHcCCeEEEEEeCCCCHHHHHHHHH
Confidence 357889998 4446666776654 2456788876543222 223444556544 477898887654222
Q ss_pred ----CCCCcceEEEc
Q 016441 99 ----RTRKFDRIIFN 109 (389)
Q Consensus 99 ----k~~~FDrIIFN 109 (389)
...+.|.+|.|
T Consensus 76 ~~~~~~g~iD~lv~~ 90 (251)
T PRK12481 76 QAVEVMGHIDILINN 90 (251)
T ss_pred HHHHHcCCCCEEEEC
Confidence 12568988877
No 206
>PRK11524 putative methyltransferase; Provisional
Probab=40.52 E-value=53 Score=32.02 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=57.5
Q ss_pred EeccccCCCCCCCCcCCCCcceEEEcCCCCCCCCCcc--chHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCc
Q 016441 84 LHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKED--NHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSN 161 (389)
Q Consensus 84 lfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED--~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s 161 (389)
++.-||.++-. .+....||.||-|=|.-......+ .........+.+..+|..|..+|+++|.|.|-+ +.. .-.
T Consensus 11 i~~gD~~~~l~--~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~-~~~-~~~ 86 (284)
T PRK11524 11 IIHGDALTELK--KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN-STE-NMP 86 (284)
T ss_pred EEeccHHHHHH--hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc-Cch-hhh
Confidence 44456666332 245578999999988743111111 011134466778999999999999999998853 221 111
Q ss_pred ccHHHHHhhCCcEEEEEeeCC
Q 016441 162 WNIKELAIGSSLSLIWCSEFK 182 (389)
Q Consensus 162 WnIe~LAa~aGL~L~~~~~F~ 182 (389)
...++.+.|+.+....-..
T Consensus 87 --~~~~~~~~~f~~~~~iiW~ 105 (284)
T PRK11524 87 --FIDLYCRKLFTIKSRIVWS 105 (284)
T ss_pred --HHHHHHhcCcceEEEEEEE
Confidence 1345567788877766554
No 207
>PRK08303 short chain dehydrogenase; Provisional
Probab=39.76 E-value=2.4e+02 Score=27.57 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=49.0
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhh---hhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKY---KRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY---~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L 98 (389)
++.+|+.|=+ =..-+++|+.+ ..+.+|++++.+.... .+.+ ...++..+.|+..|.. +.+.+|.++..+...+
T Consensus 8 ~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 8 GKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRAR-RSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccc-cccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 5679999944 45666666655 2356888888764210 0000 0122334556666654 4577898886543221
Q ss_pred ------CCCCcceEEEcC
Q 016441 99 ------RTRKFDRIIFNF 110 (389)
Q Consensus 99 ------k~~~FDrIIFNF 110 (389)
+-.+.|.+|.|-
T Consensus 86 ~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 86 VERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHcCCccEEEECC
Confidence 125789998884
No 208
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=39.72 E-value=75 Score=33.90 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=48.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRT 100 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~ 100 (389)
.-+++|+++|-|.+-.. +++.+. .+..+++--.| ++.++.+++.|..+++| ||++-+.-....-
T Consensus 415 ~~~~hiiI~G~G~~G~~--la~~L~~~g~~vvvId~d------------~~~~~~~~~~g~~~i~G-D~~~~~~L~~a~i 479 (558)
T PRK10669 415 DICNHALLVGYGRVGSL--LGEKLLAAGIPLVVIETS------------RTRVDELRERGIRAVLG-NAANEEIMQLAHL 479 (558)
T ss_pred ccCCCEEEECCChHHHH--HHHHHHHCCCCEEEEECC------------HHHHHHHHHCCCeEEEc-CCCCHHHHHhcCc
Confidence 33578999999997765 444432 24556554444 22466777889999999 9998543222233
Q ss_pred CCcceEEEcCC
Q 016441 101 RKFDRIIFNFP 111 (389)
Q Consensus 101 ~~FDrIIFNFP 111 (389)
.+.|.|+-.-|
T Consensus 480 ~~a~~viv~~~ 490 (558)
T PRK10669 480 DCARWLLLTIP 490 (558)
T ss_pred cccCEEEEEcC
Confidence 57787776544
No 209
>PRK12939 short chain dehydrogenase; Provisional
Probab=39.29 E-value=1.7e+02 Score=26.41 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=44.8
Q ss_pred CCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L-- 98 (389)
++.+||+.|= +=--..+|++.+. .+.+|++++.+. +.+ ....+.|+..+.. ..+.+|.++......+
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLA-AEA-------RELAAALEAAGGRAHAIAADLADPASVQRFFD 76 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 3577888884 3345566665542 246788885542 222 2233455555644 3467888875543211
Q ss_pred ----CCCCcceEEEcC
Q 016441 99 ----RTRKFDRIIFNF 110 (389)
Q Consensus 99 ----k~~~FDrIIFNF 110 (389)
+..+.|.||.|-
T Consensus 77 ~~~~~~~~id~vi~~a 92 (250)
T PRK12939 77 AAAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHHcCCCCEEEECC
Confidence 115689988884
No 210
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.93 E-value=2.4e+02 Score=26.40 Aligned_cols=80 Identities=11% Similarity=0.117 Sum_probs=39.6
Q ss_pred CCeEEEEecCC-hhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGD-FSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGD-FSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L--- 98 (389)
++.+|+.|=++ =---+++|+.+ ..+.+|+.+......+ + ..++-.++++ .+-.+.+.+|+++..+...+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~--~---~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~ 80 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLE--K---EVRELADTLE-GQESLLLPCDVTSDEEITACFET 80 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccch--H---HHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHH
Confidence 56899999652 22333333333 1345777765432110 0 0111122222 12233567899886543221
Q ss_pred ---CCCCcceEEEc
Q 016441 99 ---RTRKFDRIIFN 109 (389)
Q Consensus 99 ---k~~~FDrIIFN 109 (389)
+..+.|.+|.|
T Consensus 81 ~~~~~g~ld~lv~n 94 (257)
T PRK08594 81 IKEEVGVIHGVAHC 94 (257)
T ss_pred HHHhCCCccEEEEC
Confidence 12678988877
No 211
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.53 E-value=2.1e+02 Score=25.63 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=57.9
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc----
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL---- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L---- 98 (389)
+++||+.|=+.+ -..++++.+ ..+.+|++++.+.+ .+ ....+.++..+......+|.++-.+...+
T Consensus 5 ~~~vlItGa~g~-iG~~~a~~l~~~G~~V~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGVSEG-LGYAVAYFALKEGAQVCINSRNEN-KL-------KRMKKTLSKYGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHH
Confidence 468999987653 223333332 23457888877532 11 11223334444444556777764322110
Q ss_pred --CCCCcceEEEcCCCCCCCCC---ccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEe
Q 016441 99 --RTRKFDRIIFNFPHAGFYGK---EDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSH 153 (389)
Q Consensus 99 --k~~~FDrIIFNFPH~G~~gk---ED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTL 153 (389)
.....|.||+|=........ ++....+..|-.-....++.+.++++++|.|.++-
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 12457988887543221111 11122233333323334555556666677665544
No 212
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=38.32 E-value=3.1e+02 Score=25.01 Aligned_cols=79 Identities=14% Similarity=0.264 Sum_probs=44.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT-CILHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv-~VlfgVDATkL~~~~~L-- 98 (389)
++.+||++|=+. --..+|++.+ ..+.+|+.++.+. +.+ .+..++|++.|. ...+-+|.++......+
T Consensus 10 ~~k~ilItGas~-~IG~~la~~l~~~G~~v~~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (256)
T PRK06124 10 AGQVALVTGSAR-GLGFEIARALAGAGAHVLVNGRNA-ATL-------EAAVAALRAAGGAAEALAFDIADEEAVAAAFA 80 (256)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHcCCeEEEEeCCH-HHH-------HHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 467899998443 3345555443 1246788887764 222 223455665664 33566788775432111
Q ss_pred ----CCCCcceEEEcC
Q 016441 99 ----RTRKFDRIIFNF 110 (389)
Q Consensus 99 ----k~~~FDrIIFNF 110 (389)
...+.|.||.|-
T Consensus 81 ~~~~~~~~id~vi~~a 96 (256)
T PRK06124 81 RIDAEHGRLDILVNNV 96 (256)
T ss_pred HHHHhcCCCCEEEECC
Confidence 125689888884
No 213
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.17 E-value=2e+02 Score=27.35 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=42.7
Q ss_pred CCCeEEEEecC---Ch--hHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEeccccCCCCCCC
Q 016441 23 SNHQILLVGEG---DF--SFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-KKLGTCILHGVDATTMELHP 96 (389)
Q Consensus 23 s~~rILLVGEG---DF--SFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-r~~Gv~VlfgVDATkL~~~~ 96 (389)
+++.+|+.|=+ .. ..+++|+++ +.+|+.+..+. +..+ .+++| ++.|..+.+.+|+++.....
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~---Ga~V~~~~r~~--~~~~-------~~~~~~~~~g~~~~~~~Dv~d~~~v~ 73 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQ---GAELAFTYQGE--ALGK-------RVKPLAESLGSDFVLPCDVEDIASVD 73 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhC---CCEEEEecCch--HHHH-------HHHHHHHhcCCceEEeCCCCCHHHHH
Confidence 35679999965 33 444445442 56787765542 1111 12233 23465566888999875432
Q ss_pred Cc------CCCCcceEEEcC
Q 016441 97 DL------RTRKFDRIIFNF 110 (389)
Q Consensus 97 ~L------k~~~FDrIIFNF 110 (389)
.+ +..+.|.+|.|=
T Consensus 74 ~~~~~~~~~~g~iD~lVnnA 93 (271)
T PRK06505 74 AVFEALEKKWGKLDFVVHAI 93 (271)
T ss_pred HHHHHHHHHhCCCCEEEECC
Confidence 21 125789888873
No 214
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=37.85 E-value=59 Score=27.30 Aligned_cols=54 Identities=28% Similarity=0.390 Sum_probs=34.0
Q ss_pred eEEEEecCChhHHHHHHHH----hCC-CCcEEeccccC---HHHHHHhhhhHHHHHHHHH-hCCCEEE
Q 016441 26 QILLVGEGDFSFSLCLALA----FGS-ASNICASSLDS---YDDVIQKYKRAKSNLDNLK-KLGTCIL 84 (389)
Q Consensus 26 rILLVGEGDFSFSlSLa~~----~gs-~~nLvATSlDS---eeeL~~KY~~A~~Ni~~Lr-~~Gv~Vl 84 (389)
.|++++-| +||.+++.. .|. ..++.|-++.. .+++.++ .++-++.+. ..|+-|+
T Consensus 1 giii~sHG--~~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~---l~~~i~~~~~~~~vlil 63 (116)
T PF03610_consen 1 GIIIASHG--SLAEGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEK---LEEAIEELDEGDGVLIL 63 (116)
T ss_dssp EEEEEEET--THHHHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHH---HHHHHHHCCTTSEEEEE
T ss_pred CEEEEECc--HHHHHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHH---HHHHHHhccCCCcEEEE
Confidence 48999999 888888754 365 45888887764 4455444 344455543 3344554
No 215
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=37.71 E-value=1.4e+02 Score=28.27 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=53.4
Q ss_pred cCCCCCCeEEEEecCCh-hHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC-C
Q 016441 19 KHYSSNHQILLVGEGDF-SFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH-P 96 (389)
Q Consensus 19 ~~Yss~~rILLVGEGDF-SFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~-~ 96 (389)
....++++||+.|.|.. .++..||+..| .++++|+-.. +..+.+++.|+..+...+....... .
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~------------~~~~~~~~~g~~~~~~~~~~~~~~~~~ 226 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKE------------EKLELAKELGADEVLNSLDDSPKDKKA 226 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCH------------HHHHHHHHhCCCEEEcCCCcCHHHHHH
Confidence 34677889999886642 45556677765 4577774432 1234455567644333221111000 0
Q ss_pred CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
....+.+|.|+ ++ +|. . .-+..+...|+++|.+...
T Consensus 227 ~~~~~~~D~vi-d~--~g~---~--------------~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 227 AGLGGGFDVIF-DF--VGT---Q--------------PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HhcCCCceEEE-EC--CCC---H--------------HHHHHHHHHhhcCCEEEEE
Confidence 12345688664 33 332 0 2355667888999987654
No 216
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=37.48 E-value=2.1e+02 Score=25.33 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=50.4
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
..+.+||=+|=|.=.++..|++. +..++|.-.|. .+.+ .+++|+.. ..++++ ..-|+.++.. ...
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~--~~~~---~~~~~~~~--~~~v~i-i~~D~~~~~~----~~~ 76 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER---AARVTAIEIDP--RLAP---RLREKFAA--ADNLTV-IHGDALKFDL----PKL 76 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCH--HHHH---HHHHHhcc--CCCEEE-EECchhcCCc----ccc
Confidence 35668999999999999999876 24677777763 2222 23444432 224554 4567777642 234
Q ss_pred CcceEEEcCCCC
Q 016441 102 KFDRIIFNFPHA 113 (389)
Q Consensus 102 ~FDrIIFNFPH~ 113 (389)
.||.|+-|.|.-
T Consensus 77 ~~d~vi~n~Py~ 88 (169)
T smart00650 77 QPYKVVGNLPYN 88 (169)
T ss_pred CCCEEEECCCcc
Confidence 699999999963
No 217
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=37.29 E-value=83 Score=32.22 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=41.6
Q ss_pred cCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEE
Q 016441 98 LRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSL 175 (389)
Q Consensus 98 Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L 175 (389)
|.....|++||=.-..|. | +..|++-|..+|+++|.+.|.=..+-.-+-=..+..-...||.+
T Consensus 224 l~d~svDvaV~CLSLMgt----n-----------~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 224 LEDESVDVAVFCLSLMGT----N-----------LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDV 286 (325)
T ss_pred CccCcccEEEeeHhhhcc----c-----------HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCee
Confidence 445667777776666663 2 67999999999999999999877664323223333333445543
No 218
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.58 E-value=74 Score=29.52 Aligned_cols=88 Identities=13% Similarity=0.085 Sum_probs=44.7
Q ss_pred CCeEEEEecCCh-hHHHHHHHHhC-CCCcEEecc---ccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCC
Q 016441 24 NHQILLVGEGDF-SFSLCLALAFG-SASNICASS---LDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPD 97 (389)
Q Consensus 24 ~~rILLVGEGDF-SFSlSLa~~~g-s~~nLvATS---lDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~ 97 (389)
+++||+.|=+.+ +--.++|+++. .+..|+.++ ++........-.....-.+++++.|..+ .+.+|.++..+...
T Consensus 6 ~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~ 85 (256)
T PRK12859 6 NKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKE 85 (256)
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 568999987643 44444444431 234676654 2211000000001112335566678765 56889887654321
Q ss_pred c------CCCCcceEEEcCC
Q 016441 98 L------RTRKFDRIIFNFP 111 (389)
Q Consensus 98 L------k~~~FDrIIFNFP 111 (389)
+ .....|.||.|--
T Consensus 86 ~~~~~~~~~g~id~li~~ag 105 (256)
T PRK12859 86 LLNKVTEQLGYPHILVNNAA 105 (256)
T ss_pred HHHHHHHHcCCCcEEEECCC
Confidence 1 1246799998853
No 219
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.57 E-value=2.3e+02 Score=25.64 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=45.0
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
+.+||+.|= .=.-..+|++.+ ..+.+|++++.+... .....++++..|..+ .+.+|.++...-..+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEEN--------LKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHH
Confidence 467888883 334555555543 235689988877532 122344555556544 468888876532111
Q ss_pred ---CCCCcceEEEcCC
Q 016441 99 ---RTRKFDRIIFNFP 111 (389)
Q Consensus 99 ---k~~~FDrIIFNFP 111 (389)
+....|.||.|-.
T Consensus 78 ~~~~~~~id~vi~~ag 93 (239)
T PRK07666 78 LKNELGSIDILINNAG 93 (239)
T ss_pred HHHHcCCccEEEEcCc
Confidence 1146788887753
No 220
>PRK07102 short chain dehydrogenase; Provisional
Probab=36.53 E-value=3.3e+02 Score=24.73 Aligned_cols=81 Identities=15% Similarity=0.227 Sum_probs=43.0
Q ss_pred CeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCE-EEeccccCCCCCCCCcC--
Q 016441 25 HQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTC-ILHGVDATTMELHPDLR-- 99 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~-VlfgVDATkL~~~~~Lk-- 99 (389)
++||+.|=.. .-..++++.+ ..+.+|+++..+.. . .....+.++.. +.. ..+.+|.++..+...+-
T Consensus 2 ~~vlItGas~-giG~~~a~~l~~~G~~Vi~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (243)
T PRK07102 2 KKILIIGATS-DIARACARRYAAAGARLYLAARDVE-R-------LERLADDLRARGAVAVSTHELDILDTASHAAFLDS 72 (243)
T ss_pred cEEEEEcCCc-HHHHHHHHHHHhcCCEEEEEeCCHH-H-------HHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH
Confidence 4788888433 2233333333 13467888877632 1 22233444433 233 34678888765432211
Q ss_pred -CCCcceEEEcCCCCC
Q 016441 100 -TRKFDRIIFNFPHAG 114 (389)
Q Consensus 100 -~~~FDrIIFNFPH~G 114 (389)
...+|.||.|=...+
T Consensus 73 ~~~~~d~vv~~ag~~~ 88 (243)
T PRK07102 73 LPALPDIVLIAVGTLG 88 (243)
T ss_pred HhhcCCEEEECCcCCC
Confidence 135799998865544
No 221
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=36.31 E-value=84 Score=26.89 Aligned_cols=57 Identities=21% Similarity=0.381 Sum_probs=38.0
Q ss_pred eEEEEecCChhHHHHHHHHh----CCCCcEEecccc---CHHHHHHhhhhHHHHHHHHHh-CCCEEEecc
Q 016441 26 QILLVGEGDFSFSLCLALAF----GSASNICASSLD---SYDDVIQKYKRAKSNLDNLKK-LGTCILHGV 87 (389)
Q Consensus 26 rILLVGEGDFSFSlSLa~~~----gs~~nLvATSlD---SeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgV 87 (389)
+||+++=|+ ||.++.... |...+|.|-++. +.+++.++. ++-++++.+ .|+-|+-++
T Consensus 3 ~ili~sHG~--~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l---~~~i~~~~~~~~vivltDl 67 (116)
T TIGR00824 3 AIIISGHGQ--AAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKY---NAALADLDTEEEVLFLVDI 67 (116)
T ss_pred EEEEEecHH--HHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHH---HHHHHhcCCCCCEEEEEeC
Confidence 699999999 777776542 555678887775 456666654 445666643 456666554
No 222
>PRK07478 short chain dehydrogenase; Provisional
Probab=36.08 E-value=3.4e+02 Score=24.79 Aligned_cols=78 Identities=10% Similarity=0.095 Sum_probs=44.6
Q ss_pred CCeEEEEecCC---hhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc-
Q 016441 24 NHQILLVGEGD---FSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL- 98 (389)
Q Consensus 24 ~~rILLVGEGD---FSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L- 98 (389)
++++|+.|=+. ...+..|++ .+.+|++++.+. +. ..+-.++|++.|.. ..+.+|.++..+...+
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~---~G~~v~~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAR---EGAKVVVGARRQ-AE-------LDQLVAEIRAEGGEAVALAGDVRDEAYAKALV 74 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---CCCEEEEEeCCH-HH-------HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 45788888653 334444443 246788887653 22 22334556666644 3567888876533211
Q ss_pred -----CCCCcceEEEcCCC
Q 016441 99 -----RTRKFDRIIFNFPH 112 (389)
Q Consensus 99 -----k~~~FDrIIFNFPH 112 (389)
+..+.|.||.|---
T Consensus 75 ~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 75 ALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 12478999988643
No 223
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=35.56 E-value=40 Score=30.38 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=24.9
Q ss_pred CCeEEEEecCChhHH--HHHHHHhCCCCcEEeccccCH
Q 016441 24 NHQILLVGEGDFSFS--LCLALAFGSASNICASSLDSY 59 (389)
Q Consensus 24 ~~rILLVGEGDFSFS--lSLa~~~gs~~nLvATSlDSe 59 (389)
...|.++|||.|-++ .+|..+.....+|+--.+|+.
T Consensus 70 ~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~ 107 (178)
T cd02008 70 KKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNR 107 (178)
T ss_pred CCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCc
Confidence 456899999999876 556554333567777788864
No 224
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=35.55 E-value=96 Score=28.45 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=46.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L-- 98 (389)
++++||+.| |.=...+++++.+ ..+.+|+.+..+. +.+ +...+.+++.|..+ .+..|.++......+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~-~~~-------~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDP-AKL-------AAAAESLKGQGLSAHALAFDVTDHDAVRAAID 79 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHhcCceEEEEEccCCCHHHHHHHHH
Confidence 357899999 4445666666654 2356788877653 222 22344556666544 466788875532211
Q ss_pred ----CCCCcceEEEcC
Q 016441 99 ----RTRKFDRIIFNF 110 (389)
Q Consensus 99 ----k~~~FDrIIFNF 110 (389)
...+.|.||.|-
T Consensus 80 ~~~~~~~~~d~li~~a 95 (255)
T PRK07523 80 AFEAEIGPIDILVNNA 95 (255)
T ss_pred HHHHhcCCCCEEEECC
Confidence 125688888763
No 225
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.50 E-value=1.5e+02 Score=30.24 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=47.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
++++|+++|=|- ..+++|+.+ ..+.+|+++..+..+.+ ++-+++|++.|++++.+-.+..+ ..
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~-------~~ 67 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQL-------KEALEELGELGIELVLGEYPEEF-------LE 67 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHH-------HHHHHHHHhcCCEEEeCCcchhH-------hh
Confidence 467899999887 445666554 34567888766654333 33456788889887665444321 24
Q ss_pred CcceEEEcCCCCC
Q 016441 102 KFDRIIFNFPHAG 114 (389)
Q Consensus 102 ~FDrIIFNFPH~G 114 (389)
.+|.||.+ |+..
T Consensus 68 ~~d~vv~~-~g~~ 79 (450)
T PRK14106 68 GVDLVVVS-PGVP 79 (450)
T ss_pred cCCEEEEC-CCCC
Confidence 57888875 5543
No 226
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=34.98 E-value=3.5e+02 Score=24.51 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=43.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L-- 98 (389)
.+.+||++| |.=--..+||+.+- .+.+++++.-.+.+. .++..+.|++.|.++ ...+|.++......+
T Consensus 5 ~~~~~lItG-~s~~iG~~la~~l~~~g~~v~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (247)
T PRK12935 5 NGKVAIVTG-GAKGIGKAITVALAQEGAKVVINYNSSKEA-------AENLVNELGKEGHDVYAVQADVSKVEDANRLVE 76 (247)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEcCCcHHH-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 357899999 44445555555441 245666543222222 123346677777644 467888876432111
Q ss_pred ----CCCCcceEEEc
Q 016441 99 ----RTRKFDRIIFN 109 (389)
Q Consensus 99 ----k~~~FDrIIFN 109 (389)
...+.|.||.|
T Consensus 77 ~~~~~~~~id~vi~~ 91 (247)
T PRK12935 77 EAVNHFGKVDILVNN 91 (247)
T ss_pred HHHHHcCCCCEEEEC
Confidence 11457887766
No 227
>PRK07454 short chain dehydrogenase; Provisional
Probab=34.94 E-value=83 Score=28.51 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=43.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc-
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL- 98 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L- 98 (389)
++.+++|++|= .=-...+|++.+. .+..|++++.+.. . ..+-.+.+++.+.. ..+.+|+++......+
T Consensus 4 ~~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (241)
T PRK07454 4 NSMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQD-A-------LEALAAELRSTGVKAAAYSIDLSNPEAIAPGI 74 (241)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHH-H-------HHHHHHHHHhCCCcEEEEEccCCCHHHHHHHH
Confidence 34567899984 3345566665542 3457888887642 1 12223334444433 3567899886543211
Q ss_pred -----CCCCcceEEEc
Q 016441 99 -----RTRKFDRIIFN 109 (389)
Q Consensus 99 -----k~~~FDrIIFN 109 (389)
+....|.||.|
T Consensus 75 ~~~~~~~~~id~lv~~ 90 (241)
T PRK07454 75 AELLEQFGCPDVLINN 90 (241)
T ss_pred HHHHHHcCCCCEEEEC
Confidence 12457888766
No 228
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=34.81 E-value=97 Score=28.13 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=44.6
Q ss_pred CCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT-CILHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv-~VlfgVDATkL~~~~~L-- 98 (389)
.+++||++|=+.+ ...++|+.+- .+.+|++++....++ ..+.+++.+. -..+.+|+++......+
T Consensus 4 ~~k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~~~~----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (248)
T TIGR01832 4 EGKVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSEPSE----------TQQQVEALGRRFLSLTADLSDIEAIKALVD 72 (248)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCchHHH----------HHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 3578999997553 5666665552 346888887643221 2233344443 34578899886543211
Q ss_pred ----CCCCcceEEEc
Q 016441 99 ----RTRKFDRIIFN 109 (389)
Q Consensus 99 ----k~~~FDrIIFN 109 (389)
...+.|.||+|
T Consensus 73 ~~~~~~~~~d~li~~ 87 (248)
T TIGR01832 73 SAVEEFGHIDILVNN 87 (248)
T ss_pred HHHHHcCCCCEEEEC
Confidence 12468999877
No 229
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=34.23 E-value=1.2e+02 Score=27.16 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=37.3
Q ss_pred eEEEEe-cCChh--HHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCC
Q 016441 26 QILLVG-EGDFS--FSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMEL 94 (389)
Q Consensus 26 rILLVG-EGDFS--FSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~ 94 (389)
++|++| -|... ++.-|++.. ..+|+.++..+ ..-+.....+++|++.|+.|. +.+|+++..+
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~-----~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~ 67 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSG-----APSAEAEAAIRELESAGARVEYVQCDVTDPEA 67 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSG-----GGSTTHHHHHHHHHHTT-EEEEEE--TTSHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCC-----CccHHHHHHHHHHHhCCCceeeeccCccCHHH
Confidence 467776 55443 334444442 67888888874 111235679999999999876 5799988654
No 230
>PRK07035 short chain dehydrogenase; Provisional
Probab=33.70 E-value=3.7e+02 Score=24.47 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=44.3
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L--- 98 (389)
+.+||+.|=+.+ ...++++.+ ..+.+|+.++.+. +. .+...++|++.|.. ..+.+|.++......+
T Consensus 8 ~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (252)
T PRK07035 8 GKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKL-DG-------CQAVADAIVAAGGKAEALACHIGEMEQIDALFAH 78 (252)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCH-HH-------HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 456888885543 233333332 1245788887653 22 23345666666643 3467788776543211
Q ss_pred ---CCCCcceEEEcCCC
Q 016441 99 ---RTRKFDRIIFNFPH 112 (389)
Q Consensus 99 ---k~~~FDrIIFNFPH 112 (389)
...+.|.||.|-..
T Consensus 79 ~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 79 IRERHGRLDILVNNAAA 95 (252)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 12468999987643
No 231
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=33.30 E-value=1.9e+02 Score=25.55 Aligned_cols=61 Identities=8% Similarity=0.019 Sum_probs=41.0
Q ss_pred HHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCC-cEEEEEeeCCCC
Q 016441 123 LLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSS-LSLIWCSEFKIE 184 (389)
Q Consensus 123 r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aG-L~L~~~~~F~~~ 184 (389)
.....-.+.+..++..+..+|+++|.+.|-+.+.. ...|-+..+....| +.+.........
T Consensus 26 ~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~iiW~K~ 87 (231)
T PF01555_consen 26 KNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDRE-IAGFLFELALEIFGGFFLRNEIIWNKP 87 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCE-ECTHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchh-hhHHHHHHHHHHhhhhheeccceeEec
Confidence 34566677899999999999999999998877653 22223333444456 888887766655
No 232
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=33.27 E-value=79 Score=32.55 Aligned_cols=101 Identities=13% Similarity=0.288 Sum_probs=68.0
Q ss_pred CCcEEeccccCHHHHHHhhhhHHHHH-------HHHHhCCCEEEeccccCCCCC-CC------CcCCCCcceEEEcCCCC
Q 016441 48 ASNICASSLDSYDDVIQKYKRAKSNL-------DNLKKLGTCILHGVDATTMEL-HP------DLRTRKFDRIIFNFPHA 113 (389)
Q Consensus 48 ~~nLvATSlDSeeeL~~KY~~A~~Ni-------~~Lr~~Gv~VlfgVDATkL~~-~~------~Lk~~~FDrIIFNFPH~ 113 (389)
+.++..-++---++|+++||.+-+.+ ++++..|-.-.|.|-....-. .+ .++-+.+||-+||-=
T Consensus 217 G~t~lVDgfy~ae~l~~~~Pe~feiLc~v~i~heYiE~~ge~h~H~v~~~p~v~~~p~~~e~~qiR~N~YDRAvfnt~-- 294 (371)
T KOG3889|consen 217 GDTVLVDGFYCAEKLRNESPEDFEILCNVKISHEYIEGSGESHIHSVSLEPPVIERPSFGEITQIRFNPYDRAVFNTL-- 294 (371)
T ss_pred CceEEEehHHHHHHHHhhChHhhhHhhcCccchhhhcCCCcccceeeccCCceEecCCCCceEEEEecccchhhhccC--
Confidence 45677777777899999999874433 566666766666664433321 11 234478999999842
Q ss_pred CCCCCccchHHHHHhHHHHHHHHHhhHhcc----cCCCeEEEEecCCCC--CCcccH
Q 016441 114 GFYGKEDNHLLIEMHRSLVRDFFRNSSGML----RDGGEVHVSHKTTVP--FSNWNI 164 (389)
Q Consensus 114 G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL----~~~GeIHVTLk~g~P--Y~sWnI 164 (389)
++.-+..|+.+-++++ .|+-++.|.|+-|.- .+.|.|
T Consensus 295 --------------p~ae~~~fY~a~r~l~~i~r~p~n~~~ikL~PGsvifiDNwRv 337 (371)
T KOG3889|consen 295 --------------PAAETIKFYEAYRKLSKICRNPDNSIEIKLRPGSVIFIDNWRV 337 (371)
T ss_pred --------------CHHHHHHHHHHHHHHHHHhcCccceEEEEecCceEEEEeceeE
Confidence 2444667888877766 488999999998863 578865
No 233
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=33.02 E-value=57 Score=30.88 Aligned_cols=112 Identities=18% Similarity=0.209 Sum_probs=68.1
Q ss_pred ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeccccCCCCCCC
Q 016441 18 IKHYSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTCILHGVDATTMELHP 96 (389)
Q Consensus 18 ~~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~VlfgVDATkL~~~~ 96 (389)
+..-.+.++||=||=+-=-=+++||++++....|++.-.|.+ . +.-|++|++.---. -++++. -||.+.-...
T Consensus 40 l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~--~---~~~A~~~~~~ag~~~~I~~~~-gda~~~l~~l 113 (205)
T PF01596_consen 40 LVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPE--R---AEIARENFRKAGLDDRIEVIE-GDALEVLPEL 113 (205)
T ss_dssp HHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHH--H---HHHHHHHHHHTTGGGGEEEEE-S-HHHHHHHH
T ss_pred HHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHH--H---HHHHHHHHHhcCCCCcEEEEE-eccHhhHHHH
Confidence 344567789999999876668888888865566776666542 2 23466666643211 244444 5665421110
Q ss_pred --CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEE
Q 016441 97 --DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVS 152 (389)
Q Consensus 97 --~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVT 152 (389)
.-....||.|.-+-.. .+ -..||.-+.++|++||-|.+-
T Consensus 114 ~~~~~~~~fD~VFiDa~K------~~-----------y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 114 ANDGEEGQFDFVFIDADK------RN-----------YLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHTTTTTSEEEEEEESTG------GG-----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred HhccCCCceeEEEEcccc------cc-----------hhhHHHHHhhhccCCeEEEEc
Confidence 0012579999887532 11 236788888999999988875
No 234
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=32.99 E-value=5.4 Score=36.48 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=21.4
Q ss_pred CChhHHHHHHHHhCCCCcEEeccccCHHHH
Q 016441 33 GDFSFSLCLALAFGSASNICASSLDSYDDV 62 (389)
Q Consensus 33 GDFSFSlSLa~~~gs~~nLvATSlDSeeeL 62 (389)
||.|||+||....++ -+|-||.-++++.
T Consensus 96 g~LSFslAlLD~~~n--GvVltsI~~Re~s 123 (151)
T PF14584_consen 96 GDLSFSLALLDDNNN--GVVLTSIHSREES 123 (151)
T ss_pred ccceeeeEEEeCCCC--EEEEEeeecCCCc
Confidence 899999999987654 4777877776543
No 235
>PRK06182 short chain dehydrogenase; Validated
Probab=32.92 E-value=2.1e+02 Score=26.66 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=42.9
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc----
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL---- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L---- 98 (389)
.++||+.|=+. -...+|++.+ ..+.+|++++.+. +. ++++.+.++.+ +..|.++......+
T Consensus 3 ~k~vlItGasg-giG~~la~~l~~~G~~V~~~~r~~-~~-----------l~~~~~~~~~~-~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASS-GIGKATARRLAAQGYTVYGAARRV-DK-----------MEDLASLGVHP-LSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCH-HH-----------HHHHHhCCCeE-EEeeCCCHHHHHHHHHHH
Confidence 46799999543 3556666554 2356888887763 22 22333445554 45788775432211
Q ss_pred --CCCCcceEEEcCC
Q 016441 99 --RTRKFDRIIFNFP 111 (389)
Q Consensus 99 --k~~~FDrIIFNFP 111 (389)
.....|.||.|-.
T Consensus 69 ~~~~~~id~li~~ag 83 (273)
T PRK06182 69 IAEEGRIDVLVNNAG 83 (273)
T ss_pred HHhcCCCCEEEECCC
Confidence 1246899988854
No 236
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.81 E-value=2.7e+02 Score=26.05 Aligned_cols=75 Identities=12% Similarity=0.252 Sum_probs=40.7
Q ss_pred CCCeEEEEec---CC--hhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeccccCCCCCCC
Q 016441 23 SNHQILLVGE---GD--FSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-KLGTCILHGVDATTMELHP 96 (389)
Q Consensus 23 s~~rILLVGE---GD--FSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-~~Gv~VlfgVDATkL~~~~ 96 (389)
+++++|+.|= +. ..-++.|++ .+.+|+.+...+. ..+.+++|. +.|..+.+.+|+++..+..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~---~G~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 72 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKR---EGAELAFTYVGDR---------FKDRITEFAAEFGSDLVFPCDVASDEQID 72 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHH---CCCeEEEEccchH---------HHHHHHHHHHhcCCcceeeccCCCHHHHH
Confidence 4578999994 23 333333443 2467776643321 112223332 2344456788988765432
Q ss_pred Cc------CCCCcceEEEc
Q 016441 97 DL------RTRKFDRIIFN 109 (389)
Q Consensus 97 ~L------k~~~FDrIIFN 109 (389)
.+ +..++|.+|.|
T Consensus 73 ~~~~~~~~~~g~iD~lvnn 91 (260)
T PRK06997 73 ALFASLGQHWDGLDGLVHS 91 (260)
T ss_pred HHHHHHHHHhCCCcEEEEc
Confidence 21 12679999998
No 237
>PRK08862 short chain dehydrogenase; Provisional
Probab=32.75 E-value=2.8e+02 Score=25.71 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=46.9
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
+.++|+.|=+. -..+++++.+ ..+.+|+.++.+. +.+ ++..+++++.|..+ .+.+|.++..+...+
T Consensus 5 ~k~~lVtGas~-GIG~aia~~la~~G~~V~~~~r~~-~~l-------~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 5 SSIILITSAGS-VLGRTISCHFARLGATLILCDQDQ-SAL-------KDTYEQCSALTDNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred CeEEEEECCcc-HHHHHHHHHHHHCCCEEEEEcCCH-HHH-------HHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHH
Confidence 46789998776 5666666554 2356888877653 322 23345555556544 566788776543222
Q ss_pred ---CCC-CcceEEEcC
Q 016441 99 ---RTR-KFDRIIFNF 110 (389)
Q Consensus 99 ---k~~-~FDrIIFNF 110 (389)
+.. +.|.+|-|-
T Consensus 76 ~~~~~g~~iD~li~na 91 (227)
T PRK08862 76 IEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHhCCCCCEEEECC
Confidence 113 789877773
No 238
>PRK06949 short chain dehydrogenase; Provisional
Probab=32.29 E-value=75 Score=28.99 Aligned_cols=80 Identities=13% Similarity=0.139 Sum_probs=43.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT-CILHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv-~VlfgVDATkL~~~~~L-- 98 (389)
.+++||+.|=+. -...++++.+ ..+..|++++.+.+ .+ +...+.|+..+. ...+.+|+++......+
T Consensus 8 ~~k~ilItGasg-~IG~~~a~~l~~~G~~Vi~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (258)
T PRK06949 8 EGKVALVTGASS-GLGARFAQVLAQAGAKVVLASRRVE-RL-------KELRAEIEAEGGAAHVVSLDVTDYQSIKAAVA 78 (258)
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 357899999433 3444444433 13457888877632 22 222334444332 23466788875432111
Q ss_pred ----CCCCcceEEEcCC
Q 016441 99 ----RTRKFDRIIFNFP 111 (389)
Q Consensus 99 ----k~~~FDrIIFNFP 111 (389)
...+.|.||.|--
T Consensus 79 ~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 79 HAETEAGTIDILVNNSG 95 (258)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 1246899888854
No 239
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=32.08 E-value=1.5e+02 Score=27.39 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=46.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L-- 98 (389)
+++++|++|=+. -...++++.+. .+.+++.++..+.+. .....+.|+..|..+ .+.+|.++..+...+
T Consensus 6 ~~k~~lItGa~~-gIG~~ia~~l~~~G~~vvi~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~ 77 (261)
T PRK08936 6 EGKVVVITGGST-GLGRAMAVRFGKEKAKVVINYRSDEEE-------ANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQ 77 (261)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCCHHH-------HHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHH
Confidence 356788888655 34555554431 245677776644322 233455666667655 467898876543211
Q ss_pred ----CCCCcceEEEcC
Q 016441 99 ----RTRKFDRIIFNF 110 (389)
Q Consensus 99 ----k~~~FDrIIFNF 110 (389)
...+.|.||.|-
T Consensus 78 ~~~~~~g~id~lv~~a 93 (261)
T PRK08936 78 TAVKEFGTLDVMINNA 93 (261)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124689888774
No 240
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=31.96 E-value=1.9e+02 Score=28.82 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=53.3
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeccccCCCCCCCCcC
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLK-KLGTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr-~~Gv~VlfgVDATkL~~~~~Lk 99 (389)
..++++||=||=|-=+++..|++. +..++|.-.|.. +.+ .+.+++.... ...++|+++ |+.++. +
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~--li~---~l~~~~~~~~~~~~v~ii~~-Dal~~~----~- 99 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPR--MVA---ELKKRFQNSPLASKLEVIEG-DALKTE----F- 99 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHH--HHH---HHHHHHHhcCCCCcEEEEEC-CHhhhc----c-
Confidence 356789999999999999999875 346888777742 222 2444544322 123666655 887643 1
Q ss_pred CCCcceEEEcCCCCCC
Q 016441 100 TRKFDRIIFNFPHAGF 115 (389)
Q Consensus 100 ~~~FDrIIFNFPH~G~ 115 (389)
..||.||-|-|=-..
T Consensus 100 -~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 100 -PYFDVCVANVPYQIS 114 (294)
T ss_pred -cccCEEEecCCcccC
Confidence 358999999998763
No 241
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=31.35 E-value=2.7e+02 Score=26.44 Aligned_cols=100 Identities=22% Similarity=0.247 Sum_probs=56.9
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEe-ccccCCCCCCCCc
Q 016441 21 YSSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNL-KKLGTCILH-GVDATTMELHPDL 98 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~L-r~~Gv~Vlf-gVDATkL~~~~~L 98 (389)
+-+.-++|=+|.|.=-=|+-||+. +. -.|+.|..+...+| ++.+ ++.++.|-. -+|... . .+
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~---G~--~VtAvD~s~~al~~-------l~~~a~~~~l~i~~~~~Dl~~---~-~~ 91 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQ---GF--DVTAVDISPVALEK-------LQRLAEEEGLDIRTRVADLND---F-DF 91 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHT---T---EEEEEESSHHHHHH-------HHHHHHHTT-TEEEEE-BGCC---B-S-
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHC---CC--eEEEEECCHHHHHH-------HHHHHhhcCceeEEEEecchh---c-cc
Confidence 335679999999999989999875 33 45667754443332 2222 234544321 233322 2 23
Q ss_pred CCCCcceEEEc--CCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441 99 RTRKFDRIIFN--FPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV 151 (389)
Q Consensus 99 k~~~FDrIIFN--FPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV 151 (389)
. ..||.|+.- |.|+ +++++...+++-..-+++||-+.+
T Consensus 92 ~-~~yD~I~st~v~~fL--------------~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 92 P-EEYDFIVSTVVFMFL--------------QRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp T-TTEEEEEEESSGGGS---------------GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred c-CCcCEEEEEEEeccC--------------CHHHHHHHHHHHHhhcCCcEEEEE
Confidence 2 579998732 2222 334466778888889999997555
No 242
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=31.10 E-value=1.5e+02 Score=28.98 Aligned_cols=128 Identities=18% Similarity=0.218 Sum_probs=78.1
Q ss_pred CCeEEEEecCChhHHHHHHHH-hCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccc-cCCCCCCCCcCCC
Q 016441 24 NHQILLVGEGDFSFSLCLALA-FGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVD-ATTMELHPDLRTR 101 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~-~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVD-ATkL~~~~~Lk~~ 101 (389)
..+||=+|=||=++=.-|++. |. ..|+.+-|-. ..+. -+.||.+=+..--.|-|.++ .++- ....+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~--~~L~GvDYs~-~AV~-----LA~niAe~~~~~n~I~f~q~DI~~~----~~~~~ 135 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQ--SKLTGVDYSE-KAVE-----LAQNIAERDGFSNEIRFQQLDITDP----DFLSG 135 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCC--CCccccccCH-HHHH-----HHHHHHHhcCCCcceeEEEeeccCC----ccccc
Confidence 349999999999999999865 43 2377766643 3332 24677766655555777763 3432 23346
Q ss_pred CcceEEEcCCCCCCCCCccchHHHHH-----hHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhh---CCc
Q 016441 102 KFDRIIFNFPHAGFYGKEDNHLLIEM-----HRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIG---SSL 173 (389)
Q Consensus 102 ~FDrIIFNFPH~G~~gkED~~r~Ir~-----nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~---aGL 173 (389)
+||.|.= +|+=| .|.+ +.+| .-+.-+...+|+++|...||.|+ |-.-+|..+ .||
T Consensus 136 qfdlvlD-------KGT~D---AisLs~d~~~~r~-~~Y~d~v~~ll~~~gifvItSCN------~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 136 QFDLVLD-------KGTLD---AISLSPDGPVGRL-VVYLDSVEKLLSPGGIFVITSCN------FTKDELVEEFENFNF 198 (227)
T ss_pred ceeEEee-------cCcee---eeecCCCCcccce-eeehhhHhhccCCCcEEEEEecC------ccHHHHHHHHhcCCe
Confidence 6776641 22211 0111 1111 56778889999999999999875 555565554 456
Q ss_pred EEEEEee
Q 016441 174 SLIWCSE 180 (389)
Q Consensus 174 ~L~~~~~ 180 (389)
.+...+|
T Consensus 199 ~~~~tvp 205 (227)
T KOG1271|consen 199 EYLSTVP 205 (227)
T ss_pred EEEEeec
Confidence 6655544
No 243
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=30.94 E-value=3e+02 Score=24.74 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=43.2
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
+.+||+.|=+.+ ...+|++.+ ..+.+|++++.+.. ......+.|++.+..+ .+..|.++...-..+
T Consensus 6 ~~~ilItGasg~-iG~~l~~~l~~~g~~V~~~~r~~~--------~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12826 6 GRVALVTGAARG-IGRAIAVRLAADGAEVIVVDICGD--------DAAATAELVEAAGGKARARQVDVRDRAALKAAVAA 76 (251)
T ss_pred CCEEEEcCCCCc-HHHHHHHHHHHCCCEEEEEeCCHH--------HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 467999995433 344444433 22467888877632 1233445566666433 455677664321111
Q ss_pred ---CCCCcceEEEcCCCC
Q 016441 99 ---RTRKFDRIIFNFPHA 113 (389)
Q Consensus 99 ---k~~~FDrIIFNFPH~ 113 (389)
+...+|.||.|-.-.
T Consensus 77 ~~~~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 77 GVEDFGRLDILVANAGIF 94 (251)
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 113688877775433
No 244
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=30.46 E-value=1.4e+02 Score=27.67 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=43.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCE-EEeccccCCCCCCCCc-
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTC-ILHGVDATTMELHPDL- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~-VlfgVDATkL~~~~~L- 98 (389)
++++||++|=+ =-.-+++|+.+. .+.+|+.++..+.+.+ +...+.++. .|.. ..+.+|.++..+...+
T Consensus 7 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 78 (260)
T PRK08416 7 KGKTLVISGGT-RGIGKAIVYEFAQSGVNIAFTYNSNVEEA-------NKIAEDLEQKYGIKAKAYPLNILEPETYKELF 78 (260)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHH-------HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 35678888844 334444554431 3467777655444332 223344443 3543 4678898875433211
Q ss_pred -----CCCCcceEEEcC
Q 016441 99 -----RTRKFDRIIFNF 110 (389)
Q Consensus 99 -----k~~~FDrIIFNF 110 (389)
...++|.||.|=
T Consensus 79 ~~~~~~~g~id~lv~nA 95 (260)
T PRK08416 79 KKIDEDFDRVDFFISNA 95 (260)
T ss_pred HHHHHhcCCccEEEECc
Confidence 125689999885
No 245
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=30.43 E-value=1.4e+02 Score=25.42 Aligned_cols=57 Identities=30% Similarity=0.428 Sum_probs=37.1
Q ss_pred eEEEEecCChhHHHHHHHHh----CCCCcEEecccc---CHHHHHHhhhhHHHHHHHHHh-CCCEEEecc
Q 016441 26 QILLVGEGDFSFSLCLALAF----GSASNICASSLD---SYDDVIQKYKRAKSNLDNLKK-LGTCILHGV 87 (389)
Q Consensus 26 rILLVGEGDFSFSlSLa~~~----gs~~nLvATSlD---SeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgV 87 (389)
+||+|+=| +|+.+++... |...++.|-++. +.+++.++ .++-++.+.+ .|+-|+.++
T Consensus 2 ~ili~sHG--~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~---i~~~i~~~~~~~~viil~Dl 66 (122)
T cd00006 2 GIIIATHG--GFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEK---IKAALAELDSGEGVLILTDL 66 (122)
T ss_pred eEEEEcCH--HHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH---HHHHHHHhCCCCcEEEEEeC
Confidence 58999999 8999987643 544577776655 44555554 3445555543 466777655
No 246
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=30.34 E-value=1.3e+02 Score=27.08 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=41.7
Q ss_pred CeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc----
Q 016441 25 HQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL---- 98 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L---- 98 (389)
.+||+.| |+=-...+||+.+. .+.+++++..+..++ +.+.++.+...+.. ..+.+|.++...-..+
T Consensus 3 k~vlItG-~s~~iG~~la~~l~~~g~~vi~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 3 KIALVTG-AKRGIGSAIARELLNDGYRVIATYFSGNDC-------AKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCcHHH-------HHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 3678887 44445555555441 246788888775422 22233333334433 3567888875432111
Q ss_pred --CCCCcceEEEc
Q 016441 99 --RTRKFDRIIFN 109 (389)
Q Consensus 99 --k~~~FDrIIFN 109 (389)
+..++|.||.|
T Consensus 75 ~~~~~~id~vi~~ 87 (245)
T PRK12824 75 EEEEGPVDILVNN 87 (245)
T ss_pred HHHcCCCCEEEEC
Confidence 12468988876
No 247
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.21 E-value=3.7e+02 Score=24.06 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=42.9
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEec-cccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCcC-
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICAS-SLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDLR- 99 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvAT-SlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~Lk- 99 (389)
+++||++|= .-.-..+|++.+ ..+..++++ ..+.. . .....+.|+..+.. ..+.+|.++......+-
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEE-A-------AQELLEEIKEEGGDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHH-H-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 457888883 323334444433 124567776 55432 1 22333445544543 45778988866432111
Q ss_pred -----CCCcceEEEcCCCC
Q 016441 100 -----TRKFDRIIFNFPHA 113 (389)
Q Consensus 100 -----~~~FDrIIFNFPH~ 113 (389)
...+|.||+|=--.
T Consensus 76 ~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 76 QIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHHHhCCCCEEEECCCcC
Confidence 13689999875433
No 248
>PRK06181 short chain dehydrogenase; Provisional
Probab=30.04 E-value=3.5e+02 Score=24.84 Aligned_cols=76 Identities=16% Similarity=0.238 Sum_probs=42.0
Q ss_pred CeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc----
Q 016441 25 HQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL---- 98 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L---- 98 (389)
.+||+.|=.. ....++++.+ ..+.+|++++.+. +. .+...+.|+..|..+ .+.+|.++......+
T Consensus 2 ~~vlVtGasg-~iG~~la~~l~~~g~~Vi~~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 72 (263)
T PRK06181 2 KVVIITGASE-GIGRALAVRLARAGAQLVLAARNE-TR-------LASLAQELADHGGEALVVPTDVSDAEACERLIEAA 72 (263)
T ss_pred CEEEEecCCc-HHHHHHHHHHHHCCCEEEEEeCCH-HH-------HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4688888533 2444444333 2345899887653 21 223345566666544 567888876542111
Q ss_pred --CCCCcceEEEc
Q 016441 99 --RTRKFDRIIFN 109 (389)
Q Consensus 99 --k~~~FDrIIFN 109 (389)
+....|.||.|
T Consensus 73 ~~~~~~id~vi~~ 85 (263)
T PRK06181 73 VARFGGIDILVNN 85 (263)
T ss_pred HHHcCCCCEEEEC
Confidence 11467888877
No 249
>PRK07109 short chain dehydrogenase; Provisional
Probab=29.65 E-value=1e+02 Score=30.39 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=46.9
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L-- 98 (389)
++.+||+.|=.. -..+++++.+ ..+.+|++++.+. +. .++..+++++.|..+ .+.+|.++......+
T Consensus 7 ~~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~-~~-------l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 7 GRQVVVITGASA-GVGRATARAFARRGAKVVLLARGE-EG-------LEALAAEIRAAGGEALAVVADVADAEAVQAAAD 77 (334)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCH-HH-------HHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHH
Confidence 346799998544 4455555544 2356788887652 22 233456667777655 467898886543221
Q ss_pred ----CCCCcceEEEc
Q 016441 99 ----RTRKFDRIIFN 109 (389)
Q Consensus 99 ----k~~~FDrIIFN 109 (389)
+..+.|.||.|
T Consensus 78 ~~~~~~g~iD~lInn 92 (334)
T PRK07109 78 RAEEELGPIDTWVNN 92 (334)
T ss_pred HHHHHCCCCCEEEEC
Confidence 12478988877
No 250
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=29.61 E-value=3.1e+02 Score=27.89 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=68.3
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC---------
Q 016441 25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH--------- 95 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~--------- 95 (389)
.+||=+|=|.=.||++|++.. ..|+|.-.+ .+..+ .+++|++...-.++.+ +.-|+.++-..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~--~~av~---~a~~n~~~~~~~~v~~-~~~d~~~~~~~~~~~~~~~~ 269 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIA--KPSVN---AAQYNIAANNIDNVQI-IRMSAEEFTQAMNGVREFRR 269 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECC--HHHHH---HHHHHHHHcCCCcEEE-EEcCHHHHHHHHhhcccccc
Confidence 357555555555555777764 245554443 33333 3666765543223443 44466553211
Q ss_pred ---CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCC
Q 016441 96 ---PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSS 172 (389)
Q Consensus 96 ---~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aG 172 (389)
.+.+...||.|+.|=|-.|. ..+++.. +.++++-|+|+..-.. --=++..|. .+
T Consensus 270 ~~~~~~~~~~~d~v~lDPPR~G~------------~~~~l~~-------l~~~~~ivYvsC~p~t--laRDl~~L~--~~ 326 (353)
T TIGR02143 270 LKGIDLKSYNCSTIFVDPPRAGL------------DPDTCKL-------VQAYERILYISCNPET--LKANLEQLS--ET 326 (353)
T ss_pred ccccccccCCCCEEEECCCCCCC------------cHHHHHH-------HHcCCcEEEEEcCHHH--HHHHHHHHh--cC
Confidence 00112358999999998774 1112221 1124666666643221 112344443 34
Q ss_pred cEEEEEeeCCCCCCCCC
Q 016441 173 LSLIWCSEFKIEDYPAY 189 (389)
Q Consensus 173 L~L~~~~~F~~~~YPGY 189 (389)
|.+.+..+|| .||.=
T Consensus 327 Y~l~~v~~~D--mFP~T 341 (353)
T TIGR02143 327 HRVERFALFD--QFPYT 341 (353)
T ss_pred cEEEEEEEcc--cCCCC
Confidence 9999999998 67743
No 251
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=29.41 E-value=2.1e+02 Score=26.73 Aligned_cols=83 Identities=12% Similarity=0.175 Sum_probs=44.8
Q ss_pred CCCeEEEEecC-ChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeccccCCCCCCCCc-
Q 016441 23 SNHQILLVGEG-DFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT-CILHGVDATTMELHPDL- 98 (389)
Q Consensus 23 s~~rILLVGEG-DFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv-~VlfgVDATkL~~~~~L- 98 (389)
+++++|+.|=+ +=-.-+++|+.+ ..+.+|+.+..+.+.. ..++.+++|++.+. .+.+.+|.++..+...+
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~ 78 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKG------RFEKKVRELTEPLNPSLFLPCDVQDDAQIEETF 78 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccc------hHHHHHHHHHhccCcceEeecCcCCHHHHHHHH
Confidence 35689999953 222333333333 1345776665543211 12345556655432 34577898887654221
Q ss_pred -----CCCCcceEEEcCC
Q 016441 99 -----RTRKFDRIIFNFP 111 (389)
Q Consensus 99 -----k~~~FDrIIFNFP 111 (389)
+..+.|.+|.|=-
T Consensus 79 ~~~~~~~g~iD~lv~nag 96 (258)
T PRK07370 79 ETIKQKWGKLDILVHCLA 96 (258)
T ss_pred HHHHHHcCCCCEEEEccc
Confidence 1257899888854
No 252
>PRK08339 short chain dehydrogenase; Provisional
Probab=29.24 E-value=4.4e+02 Score=24.65 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=43.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCE-EEeccccCCCCCCCCc-
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL-GTC-ILHGVDATTMELHPDL- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~-Gv~-VlfgVDATkL~~~~~L- 98 (389)
+++++|+.|=+. ..-+++|+.+ ..+.+|++++.+.. .+ ++..++|++. +.. ..+.+|+++......+
T Consensus 7 ~~k~~lItGas~-gIG~aia~~l~~~G~~V~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~ 77 (263)
T PRK08339 7 SGKLAFTTASSK-GIGFGVARVLARAGADVILLSRNEE-NL-------KKAREKIKSESNVDVSYIVADLTKREDLERTV 77 (263)
T ss_pred CCCEEEEeCCCC-cHHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhhcCCceEEEEecCCCHHHHHHHH
Confidence 356789998654 3444454443 13468888877632 22 2233344432 433 3578899886543211
Q ss_pred ----CCCCcceEEEc
Q 016441 99 ----RTRKFDRIIFN 109 (389)
Q Consensus 99 ----k~~~FDrIIFN 109 (389)
+..+.|.+|.|
T Consensus 78 ~~~~~~g~iD~lv~n 92 (263)
T PRK08339 78 KELKNIGEPDIFFFS 92 (263)
T ss_pred HHHHhhCCCcEEEEC
Confidence 12568988877
No 253
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.90 E-value=3.5e+02 Score=26.12 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=44.9
Q ss_pred CCCeEEEEecCC---hhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc
Q 016441 23 SNHQILLVGEGD---FSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL 98 (389)
Q Consensus 23 s~~rILLVGEGD---FSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L 98 (389)
+++++|+.|=+. ...+..|+++ +.+++.+...+.+. .+..+++|++.|..| .+.+|+++......+
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~---Ga~Vv~~~~~~~~~-------~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~ 80 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARL---GATVVVNDVASALD-------ASDVLDEIRAAGAKAVAVAGDISQRATADEL 80 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC---CCEEEEecCCchhH-------HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 356789998765 3344444432 45677665543222 334556677777654 577888775332111
Q ss_pred -----CCCCcceEEEcC
Q 016441 99 -----RTRKFDRIIFNF 110 (389)
Q Consensus 99 -----k~~~FDrIIFNF 110 (389)
+..+.|.||.|=
T Consensus 81 ~~~~~~~g~iD~li~nA 97 (306)
T PRK07792 81 VATAVGLGGLDIVVNNA 97 (306)
T ss_pred HHHHHHhCCCCEEEECC
Confidence 125789998873
No 254
>PRK07791 short chain dehydrogenase; Provisional
Probab=28.80 E-value=1.5e+02 Score=28.29 Aligned_cols=86 Identities=17% Similarity=0.248 Sum_probs=47.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHH-HhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc-
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVI-QKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~-~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L- 98 (389)
+++++|+.|-+. ..-.++|+.+ ..+.+|+++..+....-. ..=....+.+++|++.|.. +.+.+|.++..+...+
T Consensus 5 ~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 5 DGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 456889998554 5555555544 235677777654310000 0000123455667766654 4578899886543211
Q ss_pred -----CCCCcceEEEc
Q 016441 99 -----RTRKFDRIIFN 109 (389)
Q Consensus 99 -----k~~~FDrIIFN 109 (389)
...+.|.+|.|
T Consensus 84 ~~~~~~~g~id~lv~n 99 (286)
T PRK07791 84 DAAVETFGGLDVLVNN 99 (286)
T ss_pred HHHHHhcCCCCEEEEC
Confidence 12578998887
No 255
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.75 E-value=1.3e+02 Score=27.06 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=43.2
Q ss_pred CCCeEEEEec-CChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc-
Q 016441 23 SNHQILLVGE-GDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL- 98 (389)
Q Consensus 23 s~~rILLVGE-GDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L- 98 (389)
++.++|++|= |..-.++ ++.+ ..+.+|+.++.+. +.+ ....++++..|.+ ..+.+|.++......+
T Consensus 4 ~~~~~lItG~~g~iG~~~--a~~l~~~G~~vi~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAM--AEYLAQKGAKLALIDLNQ-EKL-------EEAVAECGALGTEVRGYAANVTDEEDVEATF 73 (253)
T ss_pred CCCEEEEECCCchHHHHH--HHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 3568999984 5544443 3322 1245677776653 222 2234455555655 4578888775432111
Q ss_pred -----CCCCcceEEEcCC
Q 016441 99 -----RTRKFDRIIFNFP 111 (389)
Q Consensus 99 -----k~~~FDrIIFNFP 111 (389)
...++|.||.|--
T Consensus 74 ~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 74 AQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1246899988853
No 256
>PRK07062 short chain dehydrogenase; Provisional
Probab=28.74 E-value=1.3e+02 Score=27.70 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=44.1
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCEE-EeccccCCCCCCCCc-
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL--GTCI-LHGVDATTMELHPDL- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~--Gv~V-lfgVDATkL~~~~~L- 98 (389)
++++|+.|=+. ....++++.+ ..+.+|++++.+.. .+ .+..++|++. +..+ .+.+|.++......+
T Consensus 8 ~k~~lItGas~-giG~~ia~~l~~~G~~V~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 8 GRVAVVTGGSS-GIGLATVELLLEAGASVAICGRDEE-RL-------ASAEARLREKFPGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHH-HH-------HHHHHHHHhhCCCceEEEEEecCCCHHHHHHHH
Confidence 56789998543 4555566554 23567888877642 22 2223344443 3344 467788876543211
Q ss_pred -----CCCCcceEEEcC
Q 016441 99 -----RTRKFDRIIFNF 110 (389)
Q Consensus 99 -----k~~~FDrIIFNF 110 (389)
...+.|.+|.|=
T Consensus 79 ~~~~~~~g~id~li~~A 95 (265)
T PRK07062 79 AAVEARFGGVDMLVNNA 95 (265)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 125689888873
No 257
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=28.68 E-value=4.2e+02 Score=27.02 Aligned_cols=126 Identities=18% Similarity=0.200 Sum_probs=75.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
+..++|=||=|.==+|-|.++ +| +..++|+=.|+...-.. ++|+ +..|+.- -+-+..........+.+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~k-LG-A~~v~g~DiDp~AV~aa-----~eNa---~~N~v~~--~~~~~~~~~~~~~~~~~ 229 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAK-LG-AKKVVGVDIDPQAVEAA-----RENA---RLNGVEL--LVQAKGFLLLEVPENGP 229 (300)
T ss_pred CCCEEEEecCChhHHHHHHHH-cC-CceEEEecCCHHHHHHH-----HHHH---HHcCCch--hhhcccccchhhcccCc
Confidence 566799998875444444443 44 56799999997654433 3333 2234332 00011111111223479
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCCcccHHHHHhhCCcEEEEEe
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFSNWNIKELAIGSSLSLIWCS 179 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnIe~LAa~aGL~L~~~~ 179 (389)
||.||-|= -+. .|..+-.-...+|+|+|.+.++=--.. ..|.+.+.....||.+.+..
T Consensus 230 ~DvIVANI-LA~----------------vl~~La~~~~~~lkpgg~lIlSGIl~~--q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 230 FDVIVANI-LAE----------------VLVELAPDIKRLLKPGGRLILSGILED--QAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred ccEEEehh-hHH----------------HHHHHHHHHHHHcCCCceEEEEeehHh--HHHHHHHHHHhCCCeEeEEE
Confidence 99999986 221 233445556678999998888733222 26788888888999998754
No 258
>PRK12937 short chain dehydrogenase; Provisional
Probab=28.66 E-value=4.3e+02 Score=23.70 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=41.9
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL-HGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl-fgVDATkL~~~~~L--- 98 (389)
+.+||+.|=.. --..+||+.+. .+..++.+...+... ..+.++.++..+..|. +.+|.++..+...+
T Consensus 5 ~~~vlItG~~~-~iG~~la~~l~~~g~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (245)
T PRK12937 5 NKVAIVTGASR-GIGAAIARRLAADGFAVAVNYAGSAAA-------ADELVAEIEAAGGRAIAVQADVADAAAVTRLFDA 76 (245)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCCCHHH-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 45788887432 22333333331 245677766554332 2334556666665443 57888875432111
Q ss_pred ---CCCCcceEEEcC
Q 016441 99 ---RTRKFDRIIFNF 110 (389)
Q Consensus 99 ---k~~~FDrIIFNF 110 (389)
.....|.||.|=
T Consensus 77 ~~~~~~~id~vi~~a 91 (245)
T PRK12937 77 AETAFGRIDVLVNNA 91 (245)
T ss_pred HHHHcCCCCEEEECC
Confidence 124679888773
No 259
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=28.38 E-value=45 Score=34.26 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=30.4
Q ss_pred chHHHHHhHHH--HHHHHHhhHhcccCCCeEEEEecCC
Q 016441 121 NHLLIEMHRSL--VRDFFRNSSGMLRDGGEVHVSHKTT 156 (389)
Q Consensus 121 ~~r~Ir~nr~L--L~~FF~SA~~lL~~~GeIHVTLk~g 156 (389)
|--.|.-|++| |..++.+|..+|+++|++.|-.+-+
T Consensus 210 QAiRI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 210 QAIRIYVNDELEELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred hhheeeehhHHHHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 44456779999 9999999999999999999887755
No 260
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=27.68 E-value=1.4e+02 Score=24.15 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=44.6
Q ss_pred EEEEecCChhHHHHHHHHhCC-CCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcce
Q 016441 27 ILLVGEGDFSFSLCLALAFGS-ASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDR 105 (389)
Q Consensus 27 ILLVGEGDFSFSlSLa~~~gs-~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDr 105 (389)
|+++|=|. ++..|++.+.. ...++.-..| .+.++.+++.|..+++ -|+++........-...|.
T Consensus 1 vvI~G~g~--~~~~i~~~L~~~~~~vvvid~d------------~~~~~~~~~~~~~~i~-gd~~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGR--IGREIAEQLKEGGIDVVVIDRD------------PERVEELREEGVEVIY-GDATDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SH--HHHHHHHHHHHTTSEEEEEESS------------HHHHHHHHHTTSEEEE-S-TTSHHHHHHTTGGCESE
T ss_pred eEEEcCCH--HHHHHHHHHHhCCCEEEEEECC------------cHHHHHHHhccccccc-ccchhhhHHhhcCccccCE
Confidence 68999995 56666655532 2356665555 2347788889988888 5888765443334467888
Q ss_pred EEEcCC
Q 016441 106 IIFNFP 111 (389)
Q Consensus 106 IIFNFP 111 (389)
||--.+
T Consensus 66 vv~~~~ 71 (116)
T PF02254_consen 66 VVILTD 71 (116)
T ss_dssp EEEESS
T ss_pred EEEccC
Confidence 887655
No 261
>PRK06114 short chain dehydrogenase; Provisional
Probab=27.58 E-value=1.6e+02 Score=27.17 Aligned_cols=81 Identities=11% Similarity=0.141 Sum_probs=45.6
Q ss_pred CCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L-- 98 (389)
++.++|+.|=+.+ -..++|+.+. .+.+++.+..++.+. ..+.++.|+..|.. ..+.+|.++......+
T Consensus 7 ~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~-------~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 78 (254)
T PRK06114 7 DGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDG-------LAETAEHIEAAGRRAIQIAADVTSKADLRAAVA 78 (254)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchH-------HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 3567888885542 4444444331 246788777654322 23345566666644 3567888875432111
Q ss_pred ----CCCCcceEEEcCC
Q 016441 99 ----RTRKFDRIIFNFP 111 (389)
Q Consensus 99 ----k~~~FDrIIFNFP 111 (389)
...+.|.||.|=-
T Consensus 79 ~~~~~~g~id~li~~ag 95 (254)
T PRK06114 79 RTEAELGALTLAVNAAG 95 (254)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1256899988753
No 262
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.53 E-value=1.8e+02 Score=30.03 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=21.2
Q ss_pred CCCCCCeEEEEecCChhHHHH--HHHHhCC
Q 016441 20 HYSSNHQILLVGEGDFSFSLC--LALAFGS 47 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFSFSlS--La~~~gs 47 (389)
++-...|+.++||++..++++ |++.+|-
T Consensus 297 ~~l~gkrv~i~g~~~~~~~l~~~L~~elG~ 326 (430)
T cd01981 297 QNLTGKRAFVFGDATHVAAATRILAREMGF 326 (430)
T ss_pred ccccCCeEEEEcChHHHHHHHHHHHHHcCC
Confidence 566788999999999777765 5556764
No 263
>PRK05867 short chain dehydrogenase; Provisional
Probab=27.10 E-value=1.3e+02 Score=27.65 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=45.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L-- 98 (389)
+++++|+.|=+. ....++++.+ ..+.+|+.++.+. +. .+...++|++.|.++ .+.+|.++......+
T Consensus 8 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 8 HGKRALITGAST-GIGKRVALAYVEAGAQVAIAARHL-DA-------LEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCH-HH-------HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 356799999644 3445555443 2356888887653 22 223445566666443 567888775442211
Q ss_pred ----CCCCcceEEEcC
Q 016441 99 ----RTRKFDRIIFNF 110 (389)
Q Consensus 99 ----k~~~FDrIIFNF 110 (389)
...+.|.+|.|=
T Consensus 79 ~~~~~~g~id~lv~~a 94 (253)
T PRK05867 79 QVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHhCCCCEEEECC
Confidence 125789888883
No 264
>PRK09242 tropinone reductase; Provisional
Probab=26.64 E-value=4.9e+02 Score=23.78 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=42.3
Q ss_pred CCCeEEEEecCC---hhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CC-EEEeccccCCCCCCC
Q 016441 23 SNHQILLVGEGD---FSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL--GT-CILHGVDATTMELHP 96 (389)
Q Consensus 23 s~~rILLVGEGD---FSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~--Gv-~VlfgVDATkL~~~~ 96 (389)
.++++|++|=+. .+.+..|++ .+.+|++++.+. +.+ +...+.|+.. +. ...+.+|.++..+..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~---~G~~v~~~~r~~-~~~-------~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~ 76 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLG---LGADVLIVARDA-DAL-------AQARDELAEEFPEREVHGLAADVSDDEDRR 76 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCH-HHH-------HHHHHHHHhhCCCCeEEEEECCCCCHHHHH
Confidence 356789998643 233333433 246888888764 222 2233444443 43 345678887754321
Q ss_pred Cc------CCCCcceEEEcC
Q 016441 97 DL------RTRKFDRIIFNF 110 (389)
Q Consensus 97 ~L------k~~~FDrIIFNF 110 (389)
.+ ...+.|.||.|-
T Consensus 77 ~~~~~~~~~~g~id~li~~a 96 (257)
T PRK09242 77 AILDWVEDHWDGLHILVNNA 96 (257)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 11 125689888774
No 265
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=26.48 E-value=70 Score=32.25 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=29.9
Q ss_pred chHHHHHhHHH--HHHHHHhhHhcccCCCeEEEEecCC
Q 016441 121 NHLLIEMHRSL--VRDFFRNSSGMLRDGGEVHVSHKTT 156 (389)
Q Consensus 121 ~~r~Ir~nr~L--L~~FF~SA~~lL~~~GeIHVTLk~g 156 (389)
|--.|.-|++| |..++.+|..+|++||.+.|-.+-+
T Consensus 202 QAlRI~VN~El~~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 202 QALRIEVNDELEELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 44467789998 9999999999999999988876543
No 266
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=26.27 E-value=3.2e+02 Score=26.25 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=49.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTR 101 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~ 101 (389)
.++++||=||=|.=.++..|++. +..++|--.|. .+.+ .+.+++.. ..++.++ .-|+.++.. .
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~--~~~~---~l~~~~~~--~~~v~ii-~~D~~~~~~------~ 90 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDP--RLAE---FLRDDEIA--AGNVEII-EGDALKVDL------P 90 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCH--HHHH---HHHHHhcc--CCCEEEE-EeccccCCc------h
Confidence 46789999999999999999987 24677766663 3322 24444433 1235554 347766532 2
Q ss_pred CcceEEEcCCCC
Q 016441 102 KFDRIIFNFPHA 113 (389)
Q Consensus 102 ~FDrIIFNFPH~ 113 (389)
.||.||-|-|.-
T Consensus 91 ~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 EFNKVVSNLPYQ 102 (258)
T ss_pred hceEEEEcCCcc
Confidence 479999999975
No 267
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.15 E-value=84 Score=24.34 Aligned_cols=65 Identities=18% Similarity=0.352 Sum_probs=39.2
Q ss_pred eEEEEecCChhH--HHHHHHHhCCCCcEEeccccCHHHHHHhhh-h-HHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441 26 QILLVGEGDFSF--SLCLALAFGSASNICASSLDSYDDVIQKYK-R-AKSNLDNLKKLGTCILHGVDATTMELH 95 (389)
Q Consensus 26 rILLVGEGDFSF--SlSLa~~~gs~~nLvATSlDSeeeL~~KY~-~-A~~Ni~~Lr~~Gv~VlfgVDATkL~~~ 95 (389)
||++||=|.=+- |..|++ ++....| ++..+.+....+ + ++...+.|++.|+.|+++...+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~-~g~~vtl----i~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~ 69 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE-LGKEVTL----IERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKD 69 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEE----EESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHH-hCcEEEE----EeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe
Confidence 688999887654 444433 4433222 332222332221 2 244568899999999999998887643
No 268
>PRK12743 oxidoreductase; Provisional
Probab=26.03 E-value=5.2e+02 Score=23.75 Aligned_cols=79 Identities=11% Similarity=0.176 Sum_probs=43.9
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
.++||+.|=.. .-..++++++ ..+.+|+.+...+.+.+ +.-.++|+..|..+ .+.+|.++......+
T Consensus 2 ~k~vlItGas~-giG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (256)
T PRK12743 2 AQVAIVTASDS-GIGKACALLLAQQGFDIGITWHSDEEGA-------KETAEEVRSHGVRAEIRQLDLSDLPEGAQALDK 73 (256)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCChHHH-------HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 45789999544 2444454443 12457766644433332 22345666677544 467888875542211
Q ss_pred ---CCCCcceEEEcC
Q 016441 99 ---RTRKFDRIIFNF 110 (389)
Q Consensus 99 ---k~~~FDrIIFNF 110 (389)
+..+.|.||+|-
T Consensus 74 ~~~~~~~id~li~~a 88 (256)
T PRK12743 74 LIQRLGRIDVLVNNA 88 (256)
T ss_pred HHHHcCCCCEEEECC
Confidence 125689998883
No 269
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=25.84 E-value=73 Score=32.33 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=31.0
Q ss_pred cchHHHHHhHHH--HHHHHHhhHhcccCCCeEEEEecCC
Q 016441 120 DNHLLIEMHRSL--VRDFFRNSSGMLRDGGEVHVSHKTT 156 (389)
Q Consensus 120 D~~r~Ir~nr~L--L~~FF~SA~~lL~~~GeIHVTLk~g 156 (389)
-|--.|.-|.+| |..++..|..+|++||++.|-.+-+
T Consensus 205 FQALRI~VN~EL~~L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 205 FQAIRIYVNDELEELEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 355567789999 9999999999999999998876643
No 270
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=25.73 E-value=89 Score=28.44 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=33.4
Q ss_pred CCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCC
Q 016441 101 RKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVP 158 (389)
Q Consensus 101 ~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P 158 (389)
.+.|.||||+=-..+..+ .|.-..+=-..=.+.|..+|+++|.|.|..=.|.|
T Consensus 45 ~~v~~~iFNLGYLPggDk-----~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 45 GPVDAAIFNLGYLPGGDK-----SITTKPETTLKALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp --EEEEEEEESB-CTS-T-----TSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STC
T ss_pred CCcCEEEEECCcCCCCCC-----CCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCC
Confidence 689999999855543111 12233344445678899999999999999988876
No 271
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=25.59 E-value=66 Score=27.00 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=19.9
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCcEEe
Q 016441 24 NHQILLVGEGDFSFSLCLALAFGSASNICA 53 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvA 53 (389)
+.=||+-||+||.=.+.-++..|..+.+++
T Consensus 97 d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp SEEEEE---GGGHHHHHHHHHH--EEEEEE
T ss_pred CEEEEEECcHHHHHHHHHHHHcCCEEEEEE
Confidence 455899999999999999998875555665
No 272
>PRK05875 short chain dehydrogenase; Provisional
Probab=25.44 E-value=3.8e+02 Score=24.82 Aligned_cols=78 Identities=10% Similarity=0.189 Sum_probs=42.5
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC---CCEEEeccccCCCCCCCCc-
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKL---GTCILHGVDATTMELHPDL- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~---Gv~VlfgVDATkL~~~~~L- 98 (389)
+.+||+.|=+.+ ...+|++.+ ..+.+|++++.+.+ .+ ....+.|+.. +-...+.+|.++......+
T Consensus 7 ~k~vlItGasg~-IG~~la~~l~~~G~~V~~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (276)
T PRK05875 7 DRTYLVTGGGSG-IGKGVAAGLVAAGAAVMIVGRNPD-KL-------AAAAEEIEALKGAGAVRYEPADVTDEDQVARAV 77 (276)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCeEEEEeCCHH-HH-------HHHHHHHHhccCCCceEEEEcCCCCHHHHHHHH
Confidence 468999996443 455555544 13458888887632 22 1222334433 2234456788775432211
Q ss_pred C-----CCCcceEEEcC
Q 016441 99 R-----TRKFDRIIFNF 110 (389)
Q Consensus 99 k-----~~~FDrIIFNF 110 (389)
+ ..+.|.||.|-
T Consensus 78 ~~~~~~~~~~d~li~~a 94 (276)
T PRK05875 78 DAATAWHGRLHGVVHCA 94 (276)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 1 24689998875
No 273
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=25.43 E-value=4e+02 Score=24.63 Aligned_cols=95 Identities=22% Similarity=0.300 Sum_probs=52.1
Q ss_pred CCCCCCeEEEEec-CChhHHHH-HHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCC-CC
Q 016441 20 HYSSNHQILLVGE-GDFSFSLC-LALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMEL-HP 96 (389)
Q Consensus 20 ~Yss~~rILLVGE-GDFSFSlS-La~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~-~~ 96 (389)
...++++||+.|- |....++. +|++.| ..+++|+-..+ ..+.++++|+.-+.. +...+.. ..
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~------------~~~~~~~~g~~~~~~-~~~~~~~~i~ 203 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPE------------RAALLKELGADEVVI-DDGAIAEQLR 203 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHH------------HHHHHHhcCCcEEEe-cCccHHHHHH
Confidence 3456789999996 77766653 356654 56888765532 234455677633321 1111111 01
Q ss_pred CcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441 97 DLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV 151 (389)
Q Consensus 97 ~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV 151 (389)
.+ ++.+|.|+ ..+|. ..+..+.+.|+++|.+..
T Consensus 204 ~~-~~~~d~vl---~~~~~------------------~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 204 AA-PGGFDKVL---ELVGT------------------ATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred Hh-CCCceEEE---ECCCh------------------HHHHHHHHHhccCCEEEE
Confidence 12 45688776 23442 124445677888898743
No 274
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=25.43 E-value=1.9e+02 Score=30.84 Aligned_cols=96 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred ChhhhhhhhhhhhccccccC---CCCCCeEEEEecC--ChhHHHHHHHHhCCCCcEEecc---------------ccCHH
Q 016441 1 MASVAMASQCEEKEEKWIKH---YSSNHQILLVGEG--DFSFSLCLALAFGSASNICASS---------------LDSYD 60 (389)
Q Consensus 1 ~~~~~~~~~~~~~~~K~~~~---Yss~~rILLVGEG--DFSFSlSLa~~~gs~~nLvATS---------------lDSee 60 (389)
+..++++.-+...+..|..+ -..+++|++||-| .++.+..|++. +.+++... +.-..
T Consensus 111 i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~---G~~V~v~e~~~~~GG~l~~gip~~~~~~ 187 (564)
T PRK12771 111 INAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRM---GHAVTIFEAGPKLGGMMRYGIPAYRLPR 187 (564)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEecCCCCCCeeeecCCCccCCH
Q ss_pred HHHHhhhhHHHHHHHHHhCCCEEEecccc-CCCCCCCCcCCCCcceEE
Q 016441 61 DVIQKYKRAKSNLDNLKKLGTCILHGVDA-TTMELHPDLRTRKFDRII 107 (389)
Q Consensus 61 eL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDA-TkL~~~~~Lk~~~FDrII 107 (389)
++... -++.++++|+.+.++... ..+........ ||.||
T Consensus 188 ~~~~~------~l~~~~~~Gv~~~~~~~~~~~~~~~~~~~~--~D~Vi 227 (564)
T PRK12771 188 EVLDA------EIQRILDLGVEVRLGVRVGEDITLEQLEGE--FDAVF 227 (564)
T ss_pred HHHHH------HHHHHHHCCCEEEeCCEECCcCCHHHHHhh--CCEEE
No 275
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=25.40 E-value=3.6e+02 Score=25.50 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=52.3
Q ss_pred cCCCCCCeEEEEecCChhHHHHH---HHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441 19 KHYSSNHQILLVGEGDFSFSLCL---ALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH 95 (389)
Q Consensus 19 ~~Yss~~rILLVGEGDFSFSlSL---a~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~ 95 (389)
....++++||+.|.|- ...++ |+..| ..+++|+-.. ++.+.|++.|+...+..+..
T Consensus 151 ~~~~~g~~vlV~g~g~--vg~~~~q~a~~~G--~~vi~~~~~~------------~~~~~~~~~g~~~~~~~~~~----- 209 (319)
T cd08242 151 VPITPGDKVAVLGDGK--LGLLIAQVLALTG--PDVVLVGRHS------------EKLALARRLGVETVLPDEAE----- 209 (319)
T ss_pred cCCCCCCEEEEECCCH--HHHHHHHHHHHcC--CeEEEEcCCH------------HHHHHHHHcCCcEEeCcccc-----
Confidence 3456788999999764 44443 45554 4577775432 24556666787655544321
Q ss_pred CCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEE
Q 016441 96 PDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHV 151 (389)
Q Consensus 96 ~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHV 151 (389)
.....+|.|+=. +|. + .-+..+.+.|+++|.|.+
T Consensus 210 --~~~~~~d~vid~---~g~---~--------------~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 210 --SEGGGFDVVVEA---TGS---P--------------SGLELALRLVRPRGTVVL 243 (319)
T ss_pred --ccCCCCCEEEEC---CCC---h--------------HHHHHHHHHhhcCCEEEE
Confidence 233568877642 342 1 123445566788898885
No 276
>PRK07890 short chain dehydrogenase; Provisional
Probab=25.39 E-value=1.7e+02 Score=26.71 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=44.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc-
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL- 98 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L- 98 (389)
-++++||++|=+. -...+||+.+ ..+.+|+.++.+. +. .+...++++..|.. ..+.+|.++...-..+
T Consensus 3 l~~k~vlItGa~~-~IG~~la~~l~~~G~~V~~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (258)
T PRK07890 3 LKGKVVVVSGVGP-GLGRTLAVRAARAGADVVLAARTA-ER-------LDEVAAEIDDLGRRALAVPTDITDEDQCANLV 73 (258)
T ss_pred cCCCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCCH-HH-------HHHHHHHHHHhCCceEEEecCCCCHHHHHHHH
Confidence 3567899999654 3455555443 2345788777653 22 22234555555543 4678888775432110
Q ss_pred -----CCCCcceEEEcC
Q 016441 99 -----RTRKFDRIIFNF 110 (389)
Q Consensus 99 -----k~~~FDrIIFNF 110 (389)
+..+.|.||.|=
T Consensus 74 ~~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 74 ALALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHHcCCccEEEECC
Confidence 124689888763
No 277
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=25.22 E-value=1.1e+02 Score=31.17 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=44.4
Q ss_pred CCCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHh--CCCEEEeccccCCCCCCCCcC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKK--LGTCILHGVDATTMELHPDLR 99 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~--~Gv~VlfgVDATkL~~~~~Lk 99 (389)
...+|+++|-|.+..+++- .+. .+..+++-..|. + .++.|++ .++.+++| |+++...-....
T Consensus 230 ~~~~iiIiG~G~~g~~l~~--~L~~~~~~v~vid~~~--~----------~~~~~~~~~~~~~~i~g-d~~~~~~L~~~~ 294 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAK--LLEKEGYSVKLIERDP--E----------RAEELAEELPNTLVLHG-DGTDQELLEEEG 294 (453)
T ss_pred CCCEEEEECCCHHHHHHHH--HHHhCCCeEEEEECCH--H----------HHHHHHHHCCCCeEEEC-CCCCHHHHHhcC
Confidence 3578999999998777444 331 234555443332 1 2333433 36788887 888765432333
Q ss_pred CCCcceEEEcCCC
Q 016441 100 TRKFDRIIFNFPH 112 (389)
Q Consensus 100 ~~~FDrIIFNFPH 112 (389)
-...|.||--.|.
T Consensus 295 ~~~a~~vi~~~~~ 307 (453)
T PRK09496 295 IDEADAFIALTND 307 (453)
T ss_pred CccCCEEEECCCC
Confidence 4678888865553
No 278
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=25.00 E-value=3.3e+02 Score=28.82 Aligned_cols=76 Identities=21% Similarity=0.180 Sum_probs=52.9
Q ss_pred hHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCC
Q 016441 68 RAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGG 147 (389)
Q Consensus 68 ~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~G 147 (389)
-|+.|.+..--.+.......|+++|+... ..+|.||+|=|=-=..|.+ .....|=..|.+.+++.++-.+
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~----~~~gvvI~NPPYGeRlg~~------~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPL----EEYGVVISNPPYGERLGSE------ALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCC----CcCCEEEeCCCcchhcCCh------hhHHHHHHHHHHHHHHHhcCCc
Confidence 37777766655556677788999988754 6799999998865433322 2344577788888888888666
Q ss_pred eEEEEe
Q 016441 148 EVHVSH 153 (389)
Q Consensus 148 eIHVTL 153 (389)
...+|-
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 555553
No 279
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=24.96 E-value=2.7e+02 Score=28.04 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=56.2
Q ss_pred cccCCCCCCe-EEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCC
Q 016441 17 WIKHYSSNHQ-ILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELH 95 (389)
Q Consensus 17 ~~~~Yss~~r-ILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~ 95 (389)
.+--+..+++ ++=||=||=-=+..+|.++ .+||||=. .+++++ -++ .+-.+.+.-=.++|.+.
T Consensus 26 ~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~--s~~mL~----------~a~-k~~~~~y~~t~~~ms~~ 89 (261)
T KOG3010|consen 26 KIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDV--SEAMLK----------VAK-KHPPVTYCHTPSTMSSD 89 (261)
T ss_pred HHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecC--CHHHHH----------Hhh-cCCCcccccCCcccccc
Confidence 3455677775 6678999984444555554 58999833 222222 222 33444444445556544
Q ss_pred CCc--C--CCCcceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCe
Q 016441 96 PDL--R--TRKFDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGE 148 (389)
Q Consensus 96 ~~L--k--~~~FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~Ge 148 (389)
... - .+..|.|+- + --.|=-=|..|+++|..+|+++|.
T Consensus 90 ~~v~L~g~e~SVDlI~~-----A----------qa~HWFdle~fy~~~~rvLRk~Gg 131 (261)
T KOG3010|consen 90 EMVDLLGGEESVDLITA-----A----------QAVHWFDLERFYKEAYRVLRKDGG 131 (261)
T ss_pred ccccccCCCcceeeehh-----h----------hhHHhhchHHHHHHHHHHcCCCCC
Confidence 321 1 133444431 1 112333478999999999998873
No 280
>PRK07831 short chain dehydrogenase; Provisional
Probab=24.51 E-value=1.7e+02 Score=27.04 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=43.7
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CC-C-EEEeccccCCCCCCCCc
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LG-T-CILHGVDATTMELHPDL 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~G-v-~VlfgVDATkL~~~~~L 98 (389)
+++++|++|=..+-...++++.+ ..+.+|+++..+. +.+ +...+.|++ .| . ...+.+|.++......+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 87 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE-RRL-------GETADELAAELGLGRVEAVVCDVTSEAQVDAL 87 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHHhcCCceEEEEEccCCCHHHHHHH
Confidence 46789999974333444554443 1245688876542 222 223344444 34 2 33577888875432211
Q ss_pred ------CCCCcceEEEcCC
Q 016441 99 ------RTRKFDRIIFNFP 111 (389)
Q Consensus 99 ------k~~~FDrIIFNFP 111 (389)
...+.|.||.|--
T Consensus 88 ~~~~~~~~g~id~li~~ag 106 (262)
T PRK07831 88 IDAAVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 1246898888753
No 281
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=24.39 E-value=58 Score=29.97 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCeEEEEecCChhHHH-HHHHHhCCCCcEEeccccCH
Q 016441 24 NHQILLVGEGDFSFSL-CLALAFGSASNICASSLDSY 59 (389)
Q Consensus 24 ~~rILLVGEGDFSFSl-SLa~~~gs~~nLvATSlDSe 59 (389)
...|.++|||.|-++. .|+++.....+|+--.++..
T Consensus 76 ~~vv~i~GDG~f~m~~~eL~Ta~~~~lpviivV~NN~ 112 (202)
T cd02006 76 RQVVALSGDYDFQFMIEELAVGAQHRIPYIHVLVNNA 112 (202)
T ss_pred CeEEEEEeChHhhccHHHHHHHHHhCCCeEEEEEeCc
Confidence 3468999999999995 34433222456777778753
No 282
>PRK08265 short chain dehydrogenase; Provisional
Probab=24.39 E-value=5.7e+02 Score=23.67 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=41.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT-CILHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv-~VlfgVDATkL~~~~~L-- 98 (389)
+++++|+.|=.. -..+++++.+ ..+.+|+.++.+.. .+. +..+++ +. ...+.+|.++......+
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~-~~~-------~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~ 72 (261)
T PRK08265 5 AGKVAIVTGGAT-LIGAAVARALVAAGARVAIVDIDAD-NGA-------AVAASL---GERARFIATDITDDAAIERAVA 72 (261)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHH-HHH-------HHHHHh---CCeeEEEEecCCCHHHHHHHHH
Confidence 356899998533 3455555544 13568888877632 221 112222 32 23457788875432211
Q ss_pred ----CCCCcceEEEcC
Q 016441 99 ----RTRKFDRIIFNF 110 (389)
Q Consensus 99 ----k~~~FDrIIFNF 110 (389)
...+.|.||.|-
T Consensus 73 ~~~~~~g~id~lv~~a 88 (261)
T PRK08265 73 TVVARFGRVDILVNLA 88 (261)
T ss_pred HHHHHhCCCCEEEECC
Confidence 124689988874
No 283
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=24.33 E-value=6e+02 Score=25.68 Aligned_cols=96 Identities=22% Similarity=0.196 Sum_probs=65.3
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCcCCCC
Q 016441 23 SNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDLRTRK 102 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~Lk~~~ 102 (389)
...++|=+|=||=-=++.|+..|. .+.||..- ..-...|+++|.+|+-..| ..+ ...+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S------------~~Mr~rL~~kg~~vl~~~~---w~~----~~~~ 151 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEAS------------PPMRWRLSKKGFTVLDIDD---WQQ----TDFK 151 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCC------------HHHHHHHHhCCCeEEehhh---hhc----cCCc
Confidence 456899999999999999998874 58888543 2345679999999985555 222 2367
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEec
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHK 154 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk 154 (389)
||.|..--=.- +-+ .=. ..++..+..|+|+|.+.|++.
T Consensus 152 fDvIscLNvLD----Rc~------~P~----~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 152 FDVISCLNVLD----RCD------RPL----TLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred eEEEeehhhhh----ccC------CHH----HHHHHHHHHhCCCCEEEEEEE
Confidence 99986421111 001 112 345556778999999999985
No 284
>PLN02253 xanthoxin dehydrogenase
Probab=24.26 E-value=1.2e+02 Score=28.28 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=44.3
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc----
Q 016441 24 NHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL---- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L---- 98 (389)
++++|+.| |.=....++++.+. .+.+|+.+..+.+ . ..+..+.+....-...+.+|.++..+...+
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDD-L-------GQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHH-H-------HHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHH
Confidence 56788888 44466777776552 3567888765532 1 122334443322234577888876543211
Q ss_pred --CCCCcceEEEcC
Q 016441 99 --RTRKFDRIIFNF 110 (389)
Q Consensus 99 --k~~~FDrIIFNF 110 (389)
...+.|.||.|=
T Consensus 89 ~~~~g~id~li~~A 102 (280)
T PLN02253 89 VDKFGTLDIMVNNA 102 (280)
T ss_pred HHHhCCCCEEEECC
Confidence 124689988874
No 285
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=24.25 E-value=1.9e+02 Score=29.35 Aligned_cols=53 Identities=23% Similarity=0.482 Sum_probs=28.5
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCC
Q 016441 25 HQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATT 91 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATk 91 (389)
.+|+++|-|.+..+++-.-. ..+..+++-..+.+ .++.+++ .|+.+++| |+++
T Consensus 1 m~viIiG~G~ig~~~a~~L~-~~g~~v~vid~~~~------------~~~~~~~~~~~~~~~g-d~~~ 54 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLS-GENNDVTVIDTDEE------------RLRRLQDRLDVRTVVG-NGSS 54 (453)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCcEEEEECCHH------------HHHHHHhhcCEEEEEe-CCCC
Confidence 37999999976665554211 12345554433321 2333433 56677765 6654
No 286
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=24.07 E-value=3.5e+02 Score=28.18 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=57.8
Q ss_pred eEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccC---CCCCCCCcCCCC
Q 016441 26 QILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDAT---TMELHPDLRTRK 102 (389)
Q Consensus 26 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDAT---kL~~~~~Lk~~~ 102 (389)
+||++||.==-.|++|+. ++ ...+..|+-++..+. .| |+..|+ ++. -+.....+ ...
T Consensus 47 ~~~i~nd~fGal~~~l~~-~~--~~~~~ds~~~~~~~~-------~n---~~~n~~------~~~~~~~~~~~~~~-~~~ 106 (378)
T PRK15001 47 PVLILNDAFGALSCALAE-HK--PYSIGDSYISELATR-------EN---LRLNGI------DESSVKFLDSTADY-PQQ 106 (378)
T ss_pred CEEEEcCchhHHHHHHHh-CC--CCeeehHHHHHHHHH-------HH---HHHcCC------Ccccceeecccccc-cCC
Confidence 899999965555666663 32 234455554443332 34 333443 222 12111222 244
Q ss_pred cceEEEcCCCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441 103 FDRIIFNFPHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT 156 (389)
Q Consensus 103 FDrIIFNFPH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 156 (389)
+|.|+.=.|-. +.++..-+......|.++++|.+.=+.+
T Consensus 107 ~d~vl~~~PK~---------------~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 107 PGVVLIKVPKT---------------LALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred CCEEEEEeCCC---------------HHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 89999988844 3567777888999999999988776654
No 287
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=24.05 E-value=54 Score=31.79 Aligned_cols=151 Identities=21% Similarity=0.245 Sum_probs=71.5
Q ss_pred CCCeEE--EEecCChhHHHHHHHHh------CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC---CEEEeccccCC
Q 016441 23 SNHQIL--LVGEGDFSFSLCLALAF------GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG---TCILHGVDATT 91 (389)
Q Consensus 23 s~~rIL--LVGEGDFSFSlSLa~~~------gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G---v~VlfgVDATk 91 (389)
.+.+|| .+|.|+|--+. .+.. ....+|++.-.|...... +..|+ .|...+ ..+..+ |.
T Consensus 46 ~~~~VlDPacGsG~fL~~~--~~~i~~~~~~~~~~~i~G~ei~~~~~~l-----a~~nl-~l~~~~~~~~~i~~~-d~-- 114 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAA--MEYIKEKRNKIKEINIYGIEIDPEAVAL-----AKLNL-LLHGIDNSNINIIQG-DS-- 114 (311)
T ss_dssp TTEEEEETT-TTSHHHHHH--HHHHHTCHHHHCCEEEEEEES-HHHHHH-----HHHHH-HHTTHHCBGCEEEES--T--
T ss_pred ccceeechhhhHHHHHHHH--HHhhcccccccccceeEeecCcHHHHHH-----HHhhh-hhhcccccccccccc-cc--
Confidence 344565 36777765443 3321 135678877777544333 33344 222211 123322 32
Q ss_pred CCCCCCcCCCCcceEEEcCCCCCCCCCccch-HH--------HHHhHHHHHHHHHhhHhcccCCCeEEEEecCCCCCC--
Q 016441 92 MELHPDLRTRKFDRIIFNFPHAGFYGKEDNH-LL--------IEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTTVPFS-- 160 (389)
Q Consensus 92 L~~~~~Lk~~~FDrIIFNFPH~G~~gkED~~-r~--------Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~-- 160 (389)
|..........||.||-|-|-......+... .. -+.+.++ .|+..+...|+++|++-+-+.++--+.
T Consensus 115 l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~ 192 (311)
T PF02384_consen 115 LENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEY--AFIEHALSLLKPGGRAAIILPNGFLFSSS 192 (311)
T ss_dssp TTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHH--HHHHHHHHTEEEEEEEEEEEEHHHHHGST
T ss_pred ccccccccccccccccCCCCccccccccccccccccccccCCCccchhh--hhHHHHHhhcccccceeEEecchhhhccc
Confidence 2221111357899999999988741111100 00 0122333 389999999999999887776552221
Q ss_pred -cccHHH-HHhhCCcEEEEEeeCCCCCCCC
Q 016441 161 -NWNIKE-LAIGSSLSLIWCSEFKIEDYPA 188 (389)
Q Consensus 161 -sWnIe~-LAa~aGL~L~~~~~F~~~~YPG 188 (389)
.-.|.+ |..+ ..+...+.+....|++
T Consensus 193 ~~~~iR~~ll~~--~~i~aVI~Lp~~~F~~ 220 (311)
T PF02384_consen 193 SEKKIRKYLLEN--GYIEAVISLPSNLFKP 220 (311)
T ss_dssp HHHHHHHHHHHH--EEEEEEEE--TTSSSS
T ss_pred hHHHHHHHHHhh--chhhEEeecccceecc
Confidence 234543 3333 3355666666666654
No 288
>PF07368 DUF1487: Protein of unknown function (DUF1487); InterPro: IPR009961 This family consists of several uncharacterised proteins from Drosophila melanogaster. The function of this family is unknown.
Probab=23.96 E-value=3.7e+02 Score=26.32 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=53.3
Q ss_pred EEEEecCChhHHH-HHHHHhC--CCCcEEeccccCH---HHH--------------HHhhhhHHHHHHHHHhCCCEEEec
Q 016441 27 ILLVGEGDFSFSL-CLALAFG--SASNICASSLDSY---DDV--------------IQKYKRAKSNLDNLKKLGTCILHG 86 (389)
Q Consensus 27 ILLVGEGDFSFSl-SLa~~~g--s~~nLvATSlDSe---eeL--------------~~KY~~A~~Ni~~Lr~~Gv~Vlfg 86 (389)
+.+.-|||..=+. .|++.+. -+.+.|||.+--| +++ ...+|+-...++.|+.++++++.+
T Consensus 8 MIvfe~GDlnsA~~~L~~sl~~Pf~~~~VatVlVqEsireefi~rvr~~m~pl~~~va~Hpny~rsl~~i~~l~~~~I~~ 87 (215)
T PF07368_consen 8 MIVFEDGDLNSAMHYLLESLHNPFAPGAVATVLVQESIREEFIERVRSRMKPLSPQVANHPNYLRSLKKIKCLNAKTIVA 87 (215)
T ss_pred EEEEeCCCHHHHHHHHHHHHhCcccCCcEEEEEEeHHHHHHHHHHHHHhCccCChhhccCcHHHHHHHHHHhcCCeEEEe
Confidence 5566789986554 4555442 3568999988744 122 244566678899999999999998
Q ss_pred cccCCCCCCCCcCCCCcceEEEcCCCCCC
Q 016441 87 VDATTMELHPDLRTRKFDRIIFNFPHAGF 115 (389)
Q Consensus 87 VDATkL~~~~~Lk~~~FDrIIFNFPH~G~ 115 (389)
-.-..+ ...-=.||++|||-=+
T Consensus 88 ~~~~~~-------~~aSPilV~d~~h~~f 109 (215)
T PF07368_consen 88 DFENVP-------PPASPILVCDFTHSYF 109 (215)
T ss_pred cccCCC-------CCCCCEEEcCCCHHHc
Confidence 111111 1223578999999643
No 289
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=23.91 E-value=1.9e+02 Score=26.52 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=44.4
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
++++|+.|=+. -.-.++++.+ ..+.+|++++.+.. ..+..++|++.|..+ .+.+|.++......+
T Consensus 8 ~k~vlVtGas~-gIG~~la~~l~~~G~~v~~~~r~~~---------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK12823 8 GKVVVVTGAAQ-GIGRGVALRAAAEGARVVLVDRSEL---------VHEVAAELRAAGGEALALTADLETYAGAQAAMAA 77 (260)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCchH---------HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHH
Confidence 46789988544 3444555444 23567888776521 123445566667654 467788875432111
Q ss_pred ---CCCCcceEEEcC
Q 016441 99 ---RTRKFDRIIFNF 110 (389)
Q Consensus 99 ---k~~~FDrIIFNF 110 (389)
.....|.||.|=
T Consensus 78 ~~~~~~~id~lv~nA 92 (260)
T PRK12823 78 AVEAFGRIDVLINNV 92 (260)
T ss_pred HHHHcCCCeEEEECC
Confidence 125689988874
No 290
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=23.91 E-value=71 Score=28.88 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=23.1
Q ss_pred CCeEEEEecCChhHHH-HHHHHhCCCCcEEeccccCH
Q 016441 24 NHQILLVGEGDFSFSL-CLALAFGSASNICASSLDSY 59 (389)
Q Consensus 24 ~~rILLVGEGDFSFSl-SLa~~~gs~~nLvATSlDSe 59 (389)
...|.++|||.|.++. .|..+-....+++--.++..
T Consensus 69 ~~vv~i~GDG~f~~~~~eL~ta~~~~lpi~ivV~nN~ 105 (186)
T cd02015 69 KTVICIDGDGSFQMNIQELATAAQYNLPVKIVILNNG 105 (186)
T ss_pred CeEEEEEcccHHhccHHHHHHHHHhCCCeEEEEEECC
Confidence 3568899999999875 33322222456777777754
No 291
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=23.74 E-value=2.2e+02 Score=25.82 Aligned_cols=78 Identities=10% Similarity=0.102 Sum_probs=42.4
Q ss_pred CeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeccccCCCCCCCCc----
Q 016441 25 HQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGT-CILHGVDATTMELHPDL---- 98 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv-~VlfgVDATkL~~~~~L---- 98 (389)
.+||++|=+ =....+|++.+- .+..++.+.-.+.+.+ +...+.+++.+. ...+.+|.++..+...+
T Consensus 3 k~ilItGas-~giG~~la~~l~~~g~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (248)
T PRK06947 3 KVVLITGAS-RGIGRATAVLAAARGWSVGINYARDAAAA-------EETADAVRAAGGRACVVAGDVANEADVIAMFDAV 74 (248)
T ss_pred cEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCCHHHH-------HHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHH
Confidence 478999944 345555555441 2456665543333322 233444555554 34577888876543211
Q ss_pred --CCCCcceEEEcC
Q 016441 99 --RTRKFDRIIFNF 110 (389)
Q Consensus 99 --k~~~FDrIIFNF 110 (389)
+..+.|.||.|=
T Consensus 75 ~~~~~~id~li~~a 88 (248)
T PRK06947 75 QSAFGRLDALVNNA 88 (248)
T ss_pred HHhcCCCCEEEECC
Confidence 124689999875
No 292
>PRK06194 hypothetical protein; Provisional
Probab=23.73 E-value=1.3e+02 Score=28.02 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=44.6
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
+.+||+.|=+.|- ..+|++.+ ..+.+|+++..+.. . ..++.++++..|..+ .+..|+++......+
T Consensus 6 ~k~vlVtGasggI-G~~la~~l~~~G~~V~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 6 GKVAVITGAASGF-GLAFARIGAALGMKLVLADVQQD-A-------LDRAVAELRAQGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCEEEEeCCccHH-HHHHHHHHHHCCCEEEEEeCChH-H-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4679999976542 33333332 13567888766532 1 234556666667654 478898875433211
Q ss_pred ---CCCCcceEEEcCC
Q 016441 99 ---RTRKFDRIIFNFP 111 (389)
Q Consensus 99 ---k~~~FDrIIFNFP 111 (389)
.....|.||.|=-
T Consensus 77 ~~~~~g~id~vi~~Ag 92 (287)
T PRK06194 77 ALERFGAVHLLFNNAG 92 (287)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1145788777743
No 293
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=23.66 E-value=37 Score=34.49 Aligned_cols=46 Identities=30% Similarity=0.513 Sum_probs=35.7
Q ss_pred CCCcceEEEcC-CCCCCCCCccchHHHHHhHHHHHHHHHhhHhcccCCCeEEEEecCC
Q 016441 100 TRKFDRIIFNF-PHAGFYGKEDNHLLIEMHRSLVRDFFRNSSGMLRDGGEVHVSHKTT 156 (389)
Q Consensus 100 ~~~FDrIIFNF-PH~G~~gkED~~r~Ir~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 156 (389)
..+||.|-..| =|=.+. ..+-.+.|+++++..|++||.+..|..++
T Consensus 143 ~~~FDvVScQFalHY~Fe-----------se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 143 SRKFDVVSCQFALHYAFE-----------SEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TS-EEEEEEES-GGGGGS-----------SHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred CCCcceeehHHHHHHhcC-----------CHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 36999999999 577762 23346789999999999999999998654
No 294
>PRK07063 short chain dehydrogenase; Provisional
Probab=23.19 E-value=1.7e+02 Score=26.87 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=42.9
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh--CCCE-EEeccccCCCCCCCCc-
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKK--LGTC-ILHGVDATTMELHPDL- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~--~Gv~-VlfgVDATkL~~~~~L- 98 (389)
++++|++|=+. .--+++++.+ ..+.+|+.++.+. +. .++..++|++ .+.. ..+.+|.++......+
T Consensus 7 ~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 7 GKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDA-AL-------AERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCH-HH-------HHHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 56789988553 3344444433 1356788887753 22 2233445554 3443 3567888875432211
Q ss_pred -----CCCCcceEEEc
Q 016441 99 -----RTRKFDRIIFN 109 (389)
Q Consensus 99 -----k~~~FDrIIFN 109 (389)
+..+.|.+|.|
T Consensus 78 ~~~~~~~g~id~li~~ 93 (260)
T PRK07063 78 AAAEEAFGPLDVLVNN 93 (260)
T ss_pred HHHHHHhCCCcEEEEC
Confidence 12578998887
No 295
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.06 E-value=1.7e+02 Score=27.39 Aligned_cols=75 Identities=8% Similarity=0.187 Sum_probs=42.9
Q ss_pred CCCeEEEEec---CC--hhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeccccCCCCCCC
Q 016441 23 SNHQILLVGE---GD--FSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKK-LGTCILHGVDATTMELHP 96 (389)
Q Consensus 23 s~~rILLVGE---GD--FSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~-~Gv~VlfgVDATkL~~~~ 96 (389)
+++.+|+.|= +. ...+++|++ .+.+|+.+..... ..+.+++|.+ .|..+.+.+|+++..+..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~---~G~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 72 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACRE---QGAELAFTYVVDK---------LEERVRKMAAELDSELVFRCDVASDDEIN 72 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHH---CCCEEEEEcCcHH---------HHHHHHHHHhccCCceEEECCCCCHHHHH
Confidence 4568999993 22 444444443 3567877654311 1223444433 244456888998865532
Q ss_pred Cc------CCCCcceEEEc
Q 016441 97 DL------RTRKFDRIIFN 109 (389)
Q Consensus 97 ~L------k~~~FDrIIFN 109 (389)
.+ +..+.|.+|.|
T Consensus 73 ~~~~~~~~~~g~iD~lVnn 91 (261)
T PRK08690 73 QVFADLGKHWDGLDGLVHS 91 (261)
T ss_pred HHHHHHHHHhCCCcEEEEC
Confidence 22 12579999988
No 296
>PRK09072 short chain dehydrogenase; Provisional
Probab=22.96 E-value=4.8e+02 Score=24.01 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=40.7
Q ss_pred CCeEEEEecCC---hhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc--
Q 016441 24 NHQILLVGEGD---FSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL-- 98 (389)
Q Consensus 24 ~~rILLVGEGD---FSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L-- 98 (389)
+.+||++|=+. .+.++.|++ .+..|++++.+. +.+ .+...+|+..+-...+.+|.++......+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~---~G~~V~~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~ 73 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAA---AGARLLLVGRNA-EKL-------EALAARLPYPGRHRWVVADLTSEAGREAVLA 73 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEECCH-HHH-------HHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 56799998544 233333443 246788888763 222 12223342222233457888876542211
Q ss_pred ---CCCCcceEEEcC
Q 016441 99 ---RTRKFDRIIFNF 110 (389)
Q Consensus 99 ---k~~~FDrIIFNF 110 (389)
+.+..|.||.|-
T Consensus 74 ~~~~~~~id~lv~~a 88 (263)
T PRK09072 74 RAREMGGINVLINNA 88 (263)
T ss_pred HHHhcCCCCEEEECC
Confidence 125689999884
No 297
>PRK08643 acetoin reductase; Validated
Probab=22.89 E-value=2e+02 Score=26.23 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=43.4
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L--- 98 (389)
++++|++|=..+ -..+|++.+ ..+.+|+.++.+.. .+ +.-..++++.+.. +.+.+|.++......+
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEE-TA-------QAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 457888884433 445555443 13467888877632 11 2233445555544 3578898876532111
Q ss_pred ---CCCCcceEEEcC
Q 016441 99 ---RTRKFDRIIFNF 110 (389)
Q Consensus 99 ---k~~~FDrIIFNF 110 (389)
+..+.|.||.|=
T Consensus 73 ~~~~~~~id~vi~~a 87 (256)
T PRK08643 73 VVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHcCCCCEEEECC
Confidence 124689998874
No 298
>PRK07074 short chain dehydrogenase; Provisional
Probab=22.82 E-value=4.5e+02 Score=23.98 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=41.6
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCC-cC--
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPD-LR-- 99 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~-Lk-- 99 (389)
+++||++|=+.+ -..+|++.+ ..+.+|++++.+.. . .+...+.+.. +-...+.+|+++...... +.
T Consensus 2 ~k~ilItGat~~-iG~~la~~L~~~g~~v~~~~r~~~-~-------~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 71 (257)
T PRK07074 2 KRTALVTGAAGG-IGQALARRFLAAGDRVLALDIDAA-A-------LAAFADALGD-ARFVPVACDLTDAASLAAALANA 71 (257)
T ss_pred CCEEEEECCcch-HHHHHHHHHHHCCCEEEEEeCCHH-H-------HHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHH
Confidence 357999987553 344444433 12457888876532 1 1222333422 223457899888654321 11
Q ss_pred ---CCCcceEEEcC
Q 016441 100 ---TRKFDRIIFNF 110 (389)
Q Consensus 100 ---~~~FDrIIFNF 110 (389)
..++|.||+|=
T Consensus 72 ~~~~~~~d~vi~~a 85 (257)
T PRK07074 72 AAERGPVDVLVANA 85 (257)
T ss_pred HHHcCCCCEEEECC
Confidence 14589888874
No 299
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=22.68 E-value=2e+02 Score=23.82 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=40.8
Q ss_pred EEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEecccc--CCCCCCCCcCCC
Q 016441 27 ILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC--ILHGVDA--TTMELHPDLRTR 101 (389)
Q Consensus 27 ILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~--VlfgVDA--TkL~~~~~Lk~~ 101 (389)
++.|+|.+-.-...+++.+ ..+-+|.||.= +-+.|++.|+. ++.-+.. ..+. ..++.+
T Consensus 4 l~s~~~~~k~~~~~~~~~l~~~G~~l~aT~g---------------T~~~l~~~gi~~~~v~~~~~~~~~i~--~~i~~~ 66 (110)
T cd01424 4 FISVADRDKPEAVEIAKRLAELGFKLVATEG---------------TAKYLQEAGIPVEVVNKVSEGRPNIV--DLIKNG 66 (110)
T ss_pred EEEEEcCcHhHHHHHHHHHHHCCCEEEEchH---------------HHHHHHHcCCeEEEEeecCCCchhHH--HHHHcC
Confidence 5669999998888888765 34678998852 23346666654 2333321 1111 123468
Q ss_pred CcceEEEcCCC
Q 016441 102 KFDRIIFNFPH 112 (389)
Q Consensus 102 ~FDrIIFNFPH 112 (389)
.+|.||.. |-
T Consensus 67 ~id~vIn~-~~ 76 (110)
T cd01424 67 EIQLVINT-PS 76 (110)
T ss_pred CeEEEEEC-CC
Confidence 89998876 53
No 300
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=22.63 E-value=1e+02 Score=33.30 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=26.1
Q ss_pred cccCCCCCCeEEEEecCChhHHHH-HHH-HhCCCCcEEeccc
Q 016441 17 WIKHYSSNHQILLVGEGDFSFSLC-LAL-AFGSASNICASSL 56 (389)
Q Consensus 17 ~~~~Yss~~rILLVGEGDFSFSlS-La~-~~gs~~nLvATSl 56 (389)
|...+-.+.|+.|.|||+.+.+++ +.. .+|-..-.++|..
T Consensus 321 ~~~~~L~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t~~ 362 (513)
T TIGR01861 321 WYKERLKGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSKF 362 (513)
T ss_pred HHHHhcCCCEEEEECCchHHHHHHHHHHHhCCCEEEEEeccC
Confidence 344667899999999999888777 333 4654333333434
No 301
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.56 E-value=1.2e+02 Score=31.18 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=36.2
Q ss_pred CCCCCCeEEEEecCChhHHHHH-HHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCC
Q 016441 20 HYSSNHQILLVGEGDFSFSLCL-ALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMEL 94 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFSFSlSL-a~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~ 94 (389)
.+-.+.++.++||++..++++= ....|-..-.++|..++... .++. ..+..+......|+..-|..++.+
T Consensus 295 ~~l~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~-~~~~----~~~~~~~~~~~~~v~~~d~~el~~ 365 (428)
T cd01965 295 FYLGGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPF-EKRM----ELLASLEGIPAEVVFVGDLWDLES 365 (428)
T ss_pred HHhcCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchh-HHHH----HHhhhhcCCCceEEECCCHHHHHH
Confidence 3557899999999986665432 12344333334444443221 2221 222233334556677666666653
No 302
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.50 E-value=1.9e+02 Score=26.33 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=43.6
Q ss_pred CeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc----
Q 016441 25 HQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL---- 98 (389)
Q Consensus 25 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L---- 98 (389)
+.||++|=.. ....+|++.+ ..+.+|+++.....+. ....++.++..+.. ..+.+|.++......+
T Consensus 3 k~vlItG~sg-~iG~~la~~L~~~g~~vi~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 3 PVALVTGGRR-GIGLGIARALAAAGFDLAINDRPDDEE-------LAATQQELRALGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEecCchhH-------HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4688888544 4555555544 1245777765443322 23345566665643 3557888875432111
Q ss_pred --CCCCcceEEEcC
Q 016441 99 --RTRKFDRIIFNF 110 (389)
Q Consensus 99 --k~~~FDrIIFNF 110 (389)
.....|.||.|-
T Consensus 75 ~~~~~~id~vi~~a 88 (256)
T PRK12745 75 QAAWGRIDCLVNNA 88 (256)
T ss_pred HHhcCCCCEEEECC
Confidence 124689998883
No 303
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=22.38 E-value=6.1e+02 Score=23.23 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=42.3
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAFG-SASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L--- 98 (389)
+.+||+.|=.. .-..+||+.+. .+.+|+.++.+. +. .+...+.++..+.. ..+.+|.++...-..+
T Consensus 12 ~k~ilItGa~g-~IG~~la~~l~~~G~~V~~~~r~~-~~-------~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 12 GKTALVTGGSR-GLGLQIAEALGEAGARVVLSARKA-EE-------LEEAAAHLEALGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHcCCEEEEEeCCH-HH-------HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46799998332 23344444331 245777776653 21 12233445555644 3578888876543111
Q ss_pred ---CCCCcceEEEcC
Q 016441 99 ---RTRKFDRIIFNF 110 (389)
Q Consensus 99 ---k~~~FDrIIFNF 110 (389)
+....|.||+|=
T Consensus 83 ~~~~~~~id~vi~~a 97 (259)
T PRK08213 83 TLERFGHVDILVNNA 97 (259)
T ss_pred HHHHhCCCCEEEECC
Confidence 124689999884
No 304
>PRK07814 short chain dehydrogenase; Provisional
Probab=22.19 E-value=1.6e+02 Score=27.34 Aligned_cols=75 Identities=15% Similarity=0.264 Sum_probs=42.2
Q ss_pred CCeEEEEecCC---hhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc-
Q 016441 24 NHQILLVGEGD---FSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL- 98 (389)
Q Consensus 24 ~~rILLVGEGD---FSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L- 98 (389)
+.++|+.|-+. .+.+..|+++ +.+|+.++.+.+ .+ ++-.+.++..|..+ .+.+|.++......+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~---G~~Vi~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 78 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEA---GADVLIAARTES-QL-------DEVAEQIRAAGRRAHVVAADLAHPEATAGLA 78 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHH-HH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 57899999776 3444445442 458888877632 11 22334455555544 467888876542111
Q ss_pred -----CCCCcceEEEc
Q 016441 99 -----RTRKFDRIIFN 109 (389)
Q Consensus 99 -----k~~~FDrIIFN 109 (389)
...+.|.||.|
T Consensus 79 ~~~~~~~~~id~vi~~ 94 (263)
T PRK07814 79 GQAVEAFGRLDIVVNN 94 (263)
T ss_pred HHHHHHcCCCCEEEEC
Confidence 11467866655
No 305
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.14 E-value=2.4e+02 Score=25.86 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=43.7
Q ss_pred CCeEEEEecCCh-hHHHHHHHHh-CCCCcEEeccccCHHHHH----HhhhhHHHHHHHHHhCCC-EEEeccccCCCCCCC
Q 016441 24 NHQILLVGEGDF-SFSLCLALAF-GSASNICASSLDSYDDVI----QKYKRAKSNLDNLKKLGT-CILHGVDATTMELHP 96 (389)
Q Consensus 24 ~~rILLVGEGDF-SFSlSLa~~~-gs~~nLvATSlDSeeeL~----~KY~~A~~Ni~~Lr~~Gv-~VlfgVDATkL~~~~ 96 (389)
..+||+.|=+.| -...++++.+ ..+.+|++.+....+... .+ +++....+.++..|. ...+.+|.++..+..
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 83 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHD-KEPVLLKEEIESYGVRCEHMEIDLSQPYAPN 83 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccch-hhHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 467999997654 3444444443 124578877654111000 00 011123344555554 345678888755321
Q ss_pred C----c--CCCCcceEEEcC
Q 016441 97 D----L--RTRKFDRIIFNF 110 (389)
Q Consensus 97 ~----L--k~~~FDrIIFNF 110 (389)
. + +..+.|.||.|-
T Consensus 84 ~~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 84 RVFYAVSERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHHhCCCCCEEEECC
Confidence 1 1 125689887764
No 306
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=22.05 E-value=4.2e+02 Score=25.35 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=30.2
Q ss_pred CCCeEEEE--ecCChh-HHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEec
Q 016441 23 SNHQILLV--GEGDFS-FSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHG 86 (389)
Q Consensus 23 s~~rILLV--GEGDFS-FSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vlfg 86 (389)
...++|++ |.|-.. ++..+|++.| .++++|+-.. +..+.++++|+...+.
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~------------~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRK------------EQVDLLKKIGAEYVLN 194 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCH------------HHHHHHHHcCCcEEEE
Confidence 35567775 777766 3445677765 4688875432 2345566688765544
No 307
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=21.69 E-value=3.1e+02 Score=28.42 Aligned_cols=37 Identities=5% Similarity=0.172 Sum_probs=24.1
Q ss_pred CCCCCeEEEEecCChhHHHHH--HHHhCCCCcEEecccc
Q 016441 21 YSSNHQILLVGEGDFSFSLCL--ALAFGSASNICASSLD 57 (389)
Q Consensus 21 Yss~~rILLVGEGDFSFSlSL--a~~~gs~~nLvATSlD 57 (389)
|....|+.++||++...+++- .+.+|-...++.+.-+
T Consensus 290 ~~~~k~vai~~~~~~~~~l~~~L~~elGm~~~~~~~~~~ 328 (427)
T cd01971 290 WGLPRRFAVIADSTYALGLARFLVNELGWVPAKQVITDN 328 (427)
T ss_pred hcCCceEEEECChHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 566789999999987776654 3467644444444334
No 308
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=21.52 E-value=1.9e+02 Score=26.20 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=43.7
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L--- 98 (389)
+++||++|-.. ....+|++.+ ..+..|++++.... . .....+++++.+..+ .+.+|.++......+
T Consensus 4 ~~~vlItG~sg-~iG~~la~~l~~~g~~v~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 4 GKVALVTGAAS-GIGLEIALALAKEGAKVVIADLNDE-A-------AAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCeEEEEeCCHH-H-------HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46799998543 2344454443 13457777766532 1 122344556566554 466788775542111
Q ss_pred ---CCCCcceEEEcCC
Q 016441 99 ---RTRKFDRIIFNFP 111 (389)
Q Consensus 99 ---k~~~FDrIIFNFP 111 (389)
.....|.||.|=-
T Consensus 75 ~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 75 AVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246899998753
No 309
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=21.25 E-value=2.1e+02 Score=27.65 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=30.3
Q ss_pred CCCCeEEEEecCChhHHH-HHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEec
Q 016441 22 SSNHQILLVGEGDFSFSL-CLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHG 86 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSl-SLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vlfg 86 (389)
.++++||+.|.|-....+ .||++.| ...+++|+-++ .+.+.++++|+..+..
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G-~~~v~~~~~~~------------~~~~~~~~~g~~~~v~ 212 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASG-AYPVIVSDPNE------------YRLELAKKMGATYVVN 212 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCH------------HHHHHHHHhCCcEEEc
Confidence 467899998877655553 3567665 22477773321 2334556667654433
No 310
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=21.12 E-value=5.2e+02 Score=26.75 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=58.5
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC----CEEEeccccCCCCCCCC
Q 016441 22 SSNHQILLVGEGDFSFSLCLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLG----TCILHGVDATTMELHPD 97 (389)
Q Consensus 22 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~G----v~VlfgVDATkL~~~~~ 97 (389)
..+.+||=-|-|.=|+|.||+++.++.-.|..=-++ ++ .|+.++++.|+.| ++|.|. |..... +.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH--~~------Ra~ka~eeFr~hgi~~~vt~~hr-DVc~~G--F~ 172 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFH--ET------RAEKALEEFREHGIGDNVTVTHR-DVCGSG--FL 172 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEec--HH------HHHHHHHHHHHhCCCcceEEEEe-ecccCC--cc
Confidence 567889999999999999999998765567654442 22 3677899999987 444443 444433 34
Q ss_pred cCCCCcceEEEcCCCC
Q 016441 98 LRTRKFDRIIFNFPHA 113 (389)
Q Consensus 98 Lk~~~FDrIIFNFPH~ 113 (389)
.+...+|.|.-+-|-.
T Consensus 173 ~ks~~aDaVFLDlPaP 188 (314)
T KOG2915|consen 173 IKSLKADAVFLDLPAP 188 (314)
T ss_pred ccccccceEEEcCCCh
Confidence 4578899999998754
No 311
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=20.96 E-value=2.6e+02 Score=30.12 Aligned_cols=38 Identities=13% Similarity=0.230 Sum_probs=25.8
Q ss_pred CCCCCCeEEEEecCChhHHHH--HHHHhCCCCcEEecccc
Q 016441 20 HYSSNHQILLVGEGDFSFSLC--LALAFGSASNICASSLD 57 (389)
Q Consensus 20 ~Yss~~rILLVGEGDFSFSlS--La~~~gs~~nLvATSlD 57 (389)
.+-.++|+.++||++...+++ |++.+|-..-+++|..+
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~l~~~L~~ELGm~vv~~g~~~~ 340 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAASMTKILAREMGIRVSCAGTYCK 340 (513)
T ss_pred cccCCCEEEEEcCchHHHHHHHHHHHhCCCEEEEecCccc
Confidence 366788999999999888876 55677644323344333
No 312
>PRK05866 short chain dehydrogenase; Provisional
Probab=20.89 E-value=1.7e+02 Score=28.09 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=44.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L-- 98 (389)
.+.+||++|=+.+ -.++||+.+ ..+.+|++++.+. +.+ ++..+++++.|.. ..+.+|+++......+
T Consensus 39 ~~k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~-~~l-------~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~ 109 (293)
T PRK05866 39 TGKRILLTGASSG-IGEAAAEQFARRGATVVAVARRE-DLL-------DAVADRITRAGGDAMAVPCDLSDLDAVDALVA 109 (293)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCH-HHH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 3568999997543 233444332 1356899888763 222 2234455555544 3567888875432211
Q ss_pred ----CCCCcceEEEc
Q 016441 99 ----RTRKFDRIIFN 109 (389)
Q Consensus 99 ----k~~~FDrIIFN 109 (389)
.....|.||.|
T Consensus 110 ~~~~~~g~id~li~~ 124 (293)
T PRK05866 110 DVEKRIGGVDILINN 124 (293)
T ss_pred HHHHHcCCCCEEEEC
Confidence 12468998887
No 313
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=20.69 E-value=80 Score=29.03 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=23.8
Q ss_pred CHHHHHHhhhhHHHHHHHHHhCCCEEEec
Q 016441 58 SYDDVIQKYKRAKSNLDNLKKLGTCILHG 86 (389)
Q Consensus 58 SeeeL~~KY~~A~~Ni~~Lr~~Gv~Vlfg 86 (389)
+..+...-|+++..||..|++.||+.++-
T Consensus 38 ~~g~e~~fY~Di~rIL~dLk~~GVtl~~A 66 (144)
T KOG4549|consen 38 SKGEEMIFYDDIRRILVDLKKLGVTLIHA 66 (144)
T ss_pred cCcceeeeccchhHHHHHHHhcCcEEEEe
Confidence 34455567999999999999999999874
No 314
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=20.58 E-value=3.1e+02 Score=28.07 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEecCC--hhHHHHHHHHhCCCCcEEeccccCHHHHHHhhh
Q 016441 20 HYSSNHQILLVGEGD--FSFSLCLALAFGSASNICASSLDSYDDVIQKYK 67 (389)
Q Consensus 20 ~Yss~~rILLVGEGD--FSFSlSLa~~~gs~~nLvATSlDSeeeL~~KY~ 67 (389)
.-++.++||+.|=+. =+|+.-||++.+ ...++|+|-++..++.+++.
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lG 202 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLG 202 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHHcC
Confidence 456677888887653 467788899887 67899998877666665543
No 315
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=20.46 E-value=6.8e+02 Score=23.10 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=45.2
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeccccCCCCCCCCc---
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTC-ILHGVDATTMELHPDL--- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~-VlfgVDATkL~~~~~L--- 98 (389)
+.++|+.|=+. .-..++++.+ ..+.+++.+..+. +.+ .+-++.+++.|.. +.+.+|.++..+...+
T Consensus 10 ~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 10 GKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQ-ELV-------DKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCH-HHH-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 45788888765 3344444433 1245676664432 222 2234556666653 4578898876543211
Q ss_pred ---CCCCcceEEEcCCCC
Q 016441 99 ---RTRKFDRIIFNFPHA 113 (389)
Q Consensus 99 ---k~~~FDrIIFNFPH~ 113 (389)
...+.|.||.|---.
T Consensus 81 ~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 81 IEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHhCCCCCEEEECCCCC
Confidence 125689999996543
No 316
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=20.43 E-value=5.3e+02 Score=24.53 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=30.7
Q ss_pred cCCCCCCeEEEEecCChhHHH-HHHHHhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE
Q 016441 19 KHYSSNHQILLVGEGDFSFSL-CLALAFGSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCIL 84 (389)
Q Consensus 19 ~~Yss~~rILLVGEGDFSFSl-SLa~~~gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~Vl 84 (389)
....++++||+.|.|-..-.. .||++. .+.++++|+-+. ++.+.+++.|+..+
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~-~g~~v~~~~~~~------------~~~~~~~~~g~~~v 211 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNV-FNAKVIAVDIND------------DKLALAKEVGADLT 211 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCCh------------HHHHHHHHcCCcEE
Confidence 344668899999965433332 234543 145788885442 24555566776444
No 317
>PRK06139 short chain dehydrogenase; Provisional
Probab=20.41 E-value=1.5e+02 Score=29.41 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=45.2
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeccccCCCCCCCCc--
Q 016441 23 SNHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCI-LHGVDATTMELHPDL-- 98 (389)
Q Consensus 23 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~V-lfgVDATkL~~~~~L-- 98 (389)
.+++||+.|=.. -.-+++++.+ ..+.+|+.++.+. +.+ ++-.+++++.|+.+ ...+|.++..+...+
T Consensus 6 ~~k~vlITGAs~-GIG~aia~~la~~G~~Vvl~~R~~-~~l-------~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 6 HGAVVVITGASS-GIGQATAEAFARRGARLVLAARDE-EAL-------QAVAEECRALGAEVLVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCCEEEEcCCCC-HHHHHHHHHHHHCCCEEEEEECCH-HHH-------HHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 356788888753 2334444333 1356788887653 222 23345666777765 356788775443221
Q ss_pred ----CCCCcceEEEcC
Q 016441 99 ----RTRKFDRIIFNF 110 (389)
Q Consensus 99 ----k~~~FDrIIFNF 110 (389)
...+.|.||.|=
T Consensus 77 ~~~~~~g~iD~lVnnA 92 (330)
T PRK06139 77 QAASFGGRIDVWVNNV 92 (330)
T ss_pred HHHHhcCCCCEEEECC
Confidence 125689988873
No 318
>PRK05993 short chain dehydrogenase; Provisional
Probab=20.38 E-value=1.7e+02 Score=27.54 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=40.2
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeccccCCCCCCCCc----
Q 016441 24 NHQILLVGEGDFSFSLCLALAF-GSASNICASSLDSYDDVIQKYKRAKSNLDNLKKLGTCILHGVDATTMELHPDL---- 98 (389)
Q Consensus 24 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDSeeeL~~KY~~A~~Ni~~Lr~~Gv~VlfgVDATkL~~~~~L---- 98 (389)
.++||+.|=+. -...++|+.+ ..+.+|++++.+.+ .+++|++.|+.+ +.+|.++......+
T Consensus 4 ~k~vlItGasg-giG~~la~~l~~~G~~Vi~~~r~~~------------~~~~l~~~~~~~-~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 4 KRSILITGCSS-GIGAYCARALQSDGWRVFATCRKEE------------DVAALEAEGLEA-FQLDYAEPESIAALVAQV 69 (277)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHH------------HHHHHHHCCceE-EEccCCCHHHHHHHHHHH
Confidence 45789998633 3344444443 23568998877632 123445556554 46788775432111
Q ss_pred ---CCCCcceEEEc
Q 016441 99 ---RTRKFDRIIFN 109 (389)
Q Consensus 99 ---k~~~FDrIIFN 109 (389)
.....|.||.|
T Consensus 70 ~~~~~g~id~li~~ 83 (277)
T PRK05993 70 LELSGGRLDALFNN 83 (277)
T ss_pred HHHcCCCccEEEEC
Confidence 12467988776
Done!