Query 016442
Match_columns 389
No_of_seqs 445 out of 1261
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 13:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 5.2E-41 1.8E-45 309.9 25.4 362 1-377 61-434 (451)
2 3o7q_A L-fucose-proton symport 100.0 7.4E-39 2.5E-43 294.5 28.3 335 2-370 61-426 (438)
3 2gfp_A EMRD, multidrug resista 100.0 1.3E-37 4.4E-42 280.3 13.8 327 2-364 35-364 (375)
4 4gc0_A D-xylose-proton symport 100.0 3.8E-35 1.3E-39 273.7 20.4 371 3-386 56-473 (491)
5 4aps_A DI-OR tripeptide H+ sym 100.0 1.3E-34 4.3E-39 270.2 19.8 367 2-376 54-471 (491)
6 2cfq_A Lactose permease; trans 100.0 8.2E-33 2.8E-37 252.2 18.8 347 1-376 42-399 (417)
7 2xut_A Proton/peptide symporte 100.0 6.9E-29 2.3E-33 233.3 18.5 140 2-143 54-198 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.6 1.6E-13 5.6E-18 127.5 19.5 175 192-376 13-196 (491)
9 3o7q_A L-fucose-proton symport 99.5 2.5E-13 8.5E-18 124.2 17.6 173 194-376 28-229 (438)
10 1pw4_A Glycerol-3-phosphate tr 99.5 1.7E-13 6E-18 125.7 15.7 174 191-375 27-205 (451)
11 2xut_A Proton/peptide symporte 99.5 3.4E-13 1.2E-17 126.4 14.7 174 192-375 12-197 (524)
12 2cfq_A Lactose permease; trans 99.4 9.7E-14 3.3E-18 126.1 7.1 142 5-148 262-404 (417)
13 2gfp_A EMRD, multidrug resista 99.4 4.2E-13 1.4E-17 120.1 7.6 165 196-371 4-169 (375)
14 4gc0_A D-xylose-proton symport 99.1 6E-10 2.1E-14 103.3 13.7 143 8-150 318-469 (491)
15 2g9p_A Antimicrobial peptide l 48.7 5 0.00017 18.4 0.4 13 22-34 3-15 (26)
16 3mkt_A Multi antimicrobial ext 34.9 2.3E+02 0.0079 24.8 26.7 31 75-105 142-172 (460)
17 2jln_A MHP1; hydantoin, transp 32.5 2.8E+02 0.0097 25.0 18.5 55 85-139 19-75 (501)
18 2l2t_A Receptor tyrosine-prote 27.5 79 0.0027 17.6 3.2 9 372-380 30-38 (44)
19 2ks1_B Epidermal growth factor 26.6 82 0.0028 17.5 3.2 10 371-380 30-39 (44)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=5.2e-41 Score=309.95 Aligned_cols=362 Identities=17% Similarity=0.202 Sum_probs=279.2
Q ss_pred CCcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhh----hcccchHHHHHHHHHhhhhhccchh
Q 016442 1 MAGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW----AADTSLLALLAMRAVVGLAEGVALP 76 (389)
Q Consensus 1 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~r~l~G~~~~~~~~ 76 (389)
++++|++.+++.++..++++++|+++||+|||+++..+..+.+++.+++++ + +|++.++++|+++|++.+...+
T Consensus 61 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~ 138 (451)
T 1pw4_A 61 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWP 138 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHhhhccc
Confidence 367899999999999999999999999999999999999999999999999 8 9999999999999999999999
Q ss_pred hhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccC-cchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCc
Q 016442 77 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS 155 (389)
Q Consensus 77 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
...+++.|++|+++|++++++.+...++|..++|.+++.+.+..| ||+.|++.+++.++..++.++..||+|++.+..+
T Consensus 139 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (451)
T 1pw4_A 139 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP 218 (451)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS
T ss_pred hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC
Confidence 999999999999999999999999999999999999999888888 9999999999888877777676677665432221
Q ss_pred HHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhh
Q 016442 156 KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA 235 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (389)
+++.+...+. +.+.+++++........++.+|+|+++...+..++..........+.|.|+++.+|+++.+.+.+.+
T Consensus 219 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 295 (451)
T 1pw4_A 219 IEEYKNDYPD---DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYF 295 (451)
T ss_dssp CTTTCCC----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHH
T ss_pred hhhhcccccc---cchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 1110000000 0000000011111112578899999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHcCCchhhHHHHHHHHHhhHHH-HHHHHHhhcc--chhhHHHHHHHHHhhhhccccc
Q 016442 236 VPWSVMAFTGYLGGLLSDML--IQRGTSVTLTRKILQSIGFIAPG-IALIGLTAAK--SPVMASAWLTLAIGMKSFSHSG 310 (389)
Q Consensus 236 ~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 310 (389)
...++.+++.++.+++.||+ ++| .....+..... ..+......+ +.+......++.........+.
T Consensus 296 ~~~~~~~~~~~~~g~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 366 (451)
T 1pw4_A 296 LYEYAGIPGTLLCGWMSDKVFRGNR---------GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVML 366 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCH---------HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc---------hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHH
Confidence 99999999999999999998 766 22222222222 3333333322 3333332222222222333344
Q ss_pred cchhhhcccc-cchhHHHHHHHHHhhh-hhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 311 FLVNLQEIAP-QYSGVLHGISNTAGTF-AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 311 ~~~~~~~~~~-~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
...+..+..| ++|+++.|+.+...++ |..++|.+.|.+.|..| +...|++.+++.+++.+.....+
T Consensus 367 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 367 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776 7899999999999999 99999999999999987 88888888888777776665543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=7.4e-39 Score=294.47 Aligned_cols=335 Identities=15% Similarity=0.088 Sum_probs=267.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHh---hhhcccchHHHHHHHHHhhhhhccchhhh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAM 78 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 78 (389)
+|+|++.+.+.++..++++++|+++||+|||+++..+..+.+++.+++ .++ +|++.+++.|+++|++.+...+..
T Consensus 61 ~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~ 138 (438)
T 3o7q_A 61 FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAA 138 (438)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHhhHHHhhhhH
Confidence 467999999999999999999999999999999999999999999999 888 999999999999999999999999
Q ss_pred HHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhh-cccC-------------------------cchhHHHHhhH
Q 016442 79 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAG-------------------------IFGPFVIFGLS 132 (389)
Q Consensus 79 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~~~~-------------------------w~~~f~~~~~~ 132 (389)
.++++|++|+|+|++++++.+...++|..++|.+++.+. +..+ ||+.|++.+.+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 218 (438)
T 3o7q_A 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAI 218 (438)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 5554 99999888877
Q ss_pred HHHHHHHHHHhc-cCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 016442 133 GFLWVLVWLSAT-SSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI 211 (389)
Q Consensus 133 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (389)
.++..+..++.. ||++++.+ +++++++.+.++++++|+|+++...+..++........
T Consensus 219 ~~~~~~~~~~~~~p~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (438)
T 3o7q_A 219 VLLVALLIMLTKFPALQSDNH---------------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTAC 277 (438)
T ss_dssp HHHHHHHHHHCCCCCCTTTCC---------------------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccccc---------------------ccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 766655544432 22221110 11222344567889999999999999999988889999
Q ss_pred HHhhhHH-HHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccch
Q 016442 212 LSWMPIY-FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP 290 (389)
Q Consensus 212 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (389)
..+.|.| +++.+|+++.+.+...+...++..++.++.+++.||+++| .....+.....+..+.....++.
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH---------KVLAAYALIAMALCLISAFAGGH 348 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---------HHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---------HHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999999 8887799999999999999999999999999999999988 33344444444444444444544
Q ss_pred hhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 016442 291 VMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA 370 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 370 (389)
.......+.+.+. +...+....+..|..|++++++.++.. ...++..++|.+.|++.|..|++...|.+.+++.++..
T Consensus 349 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 349 VGLIALTLCSAFM-SIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4444444444433 334455566656666655888888877 77899999999999999998767777776655544433
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1.3e-37 Score=280.34 Aligned_cols=327 Identities=13% Similarity=0.084 Sum_probs=261.7
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.++..++ +|++.+++.|+++|++.+...+...++
T Consensus 35 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~ 112 (375)
T 2gfp_A 35 GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQGMGTGVGGVMARTL 112 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 467889999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+|+|++++++.+...++|..++|.+++.+.++.+||+.|++.++..++..+...+..||+++++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 184 (375)
T 2gfp_A 113 PRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP-------- 184 (375)
T ss_dssp HHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC--------
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc--------
Confidence 999999999999999999999999999999999999988999999998888777665444445554432210
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
+++.++++++.+|+|+++...+..++..........+.|.|+++.+|.++.+.+.......++.
T Consensus 185 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 248 (375)
T 2gfp_A 185 ----------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAA 248 (375)
T ss_dssp ----------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHH
T ss_pred ----------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1122335567888999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHh-hHHHHH--HHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIA--LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEI 318 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (389)
.++.++.+++.||.+++ ....... ...+.. .......++.+......++.....+...+....+..|.
T Consensus 249 ~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 319 (375)
T 2gfp_A 249 FFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEP 319 (375)
T ss_dssp HHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999874 2212111 111111 11111112333333333333333345566667777787
Q ss_pred cccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHH
Q 016442 319 APQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSL 364 (389)
Q Consensus 319 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 364 (389)
.|++|+++.|+.+...++|..++|.+.|.+.|..+ +...+...++
T Consensus 320 ~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~~~~ 364 (375)
T 2gfp_A 320 FPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHHH
Confidence 78999999999999999999999999999988765 7766665433
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.8e-35 Score=273.71 Aligned_cols=371 Identities=15% Similarity=0.106 Sum_probs=247.2
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhh------------------hcccchHHHHHHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW------------------AADTSLLALLAMR 64 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~r 64 (389)
+.|++.+++.+|..++++++|+++||+|||+++.++.+++.++++++++ + +|++.++++|
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a--~~~~~l~~~R 133 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA--GYVPEFVIYR 133 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGG--GCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHh--hhHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999884 5 8999999999
Q ss_pred HHhhhhhccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc--------cCcchhHHHHhhHHHHH
Q 016442 65 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPFVIFGLSGFLW 136 (389)
Q Consensus 65 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~--------~~w~~~f~~~~~~~~~~ 136 (389)
+++|++.|...+..+.+++|+.|+++|++..++.+.+...|..+++.++..+... .+||+.+.+..+..++.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999988776543 24777777666666554
Q ss_pred HHHHHHhccCCCCCC-CcCcHHHHHHHHHhcCCcccc-------CCCCCCCCCchhHHHhhcchhHHHHHHHHHHH-HHH
Q 016442 137 VLVWLSATSSTPDRH-PQISKYELEYILREKQKPLLM-------GNKHKPATVIPPFRRLLSKMPTWSIIVANAMH-SWG 207 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 207 (389)
. ...+..||+|+.. .+.++++.++..++...+... ++..++++........++.++.........+. ..+
T Consensus 214 ~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (491)
T 4gc0_A 214 L-MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVG 292 (491)
T ss_dssp H-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTC
T ss_pred h-hhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhh
Confidence 4 4445567776532 122222222211111100000 00000000011112233344444433333333 334
Q ss_pred HHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH---
Q 016442 208 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL--- 284 (389)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 284 (389)
.+.+..+.|.+.++ .+.+..+........++...++.++.+++.||+||| .....+.....+.+..+
T Consensus 293 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr---------~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 293 INVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK---------PLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc---------chhccchHHHHHHHHHHHHH
Confidence 55666666666665 677777777777788888999999999999999999 22222222222222211
Q ss_pred -hhccchhhHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh-----hHH
Q 016442 285 -TAAKSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG-----SFQ 356 (389)
Q Consensus 285 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-----~~~ 356 (389)
............ .+...++.....+..+.+..|++| +.|+++.|+.+..+++++.+++.+.+.+.+... ...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~ 442 (491)
T 4gc0_A 363 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNG 442 (491)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTC
T ss_pred HhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 122222222222 223333333444566788999998 899999999999999999999999888765422 123
Q ss_pred HHHHHHHHHHHHHHH-HHHHhccCCcccccc
Q 016442 357 GFLLLTSLLYFLSAL-FYIIFSTGERVNFDE 386 (389)
Q Consensus 357 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 386 (389)
..|++.+++++++.+ .+++++|+|.++.||
T Consensus 443 ~~~~i~~~~~~~~~i~~~~~~PETkg~tLee 473 (491)
T 4gc0_A 443 FSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHheecCCCCCCHHH
Confidence 445566666555554 455667777666543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1.3e-34 Score=270.21 Aligned_cols=367 Identities=14% Similarity=0.131 Sum_probs=252.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhh-cCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
++.|++.+.+.++..++++++|+++|| +|||+++..+..+.+++.++++++ +|++.+++.|+++|++.+...+...+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~ 131 (491)
T 4aps_A 54 ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALFGSIILIIIGTGFLKPNVST 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhccchHHH
Confidence 367889999999999999999999999 899999999999999999999999 99999999999999999999999999
Q ss_pred HHhcccCcCc--hhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCC-----Cc
Q 016442 81 MVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-----PQ 153 (389)
Q Consensus 81 ~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 153 (389)
+++|++|+++ |++++++++...++|..++|.+++.+.++.|||+.|++.++..++..+......++..++. ++
T Consensus 132 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4aps_A 132 LVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDP 211 (491)
T ss_dssp HHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCC
T ss_pred HHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCc
Confidence 9999999988 7788999999999999999999999999999999999988777766655554433322111 11
Q ss_pred CcHHHHHHHHHhc----------------CCccccCCC-----------------CCCCCCchhHHHhhcchhHHHHHHH
Q 016442 154 ISKYELEYILREK----------------QKPLLMGNK-----------------HKPATVIPPFRRLLSKMPTWSIIVA 200 (389)
Q Consensus 154 ~~~~~~~~~~~~~----------------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (389)
.++++.++..+.. .+..+.++. ...++...+.++..+....+...+.
T Consensus 212 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (491)
T 4aps_A 212 LAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIA 291 (491)
T ss_dssp CSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 1122222211110 000000000 0000000000111122334555555
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHH
Q 016442 201 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA 280 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (389)
.++....+.....++|.|.++..+.+..+.+.......+...++.++.+++.||++||+.... ..+..+....+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~----~~~~~~~~~~~~~ 367 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP----TKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch----HHHHHHHHHHHHH
Confidence 666666666777888899998778887888998999999999999999999999998853221 1112233333332
Q ss_pred HHHHhh---------ccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHh
Q 016442 281 LIGLTA---------AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE 350 (389)
Q Consensus 281 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 350 (389)
...... ..+.+......++.....+...+....+..|..| +.|+++.|+.+...++|..++|.+.+.+.|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222211 1133333333333333334445556667777777 789999999999999999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 351 LVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 351 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
. + +...|...+++.+++.+..+..
T Consensus 448 ~-~-~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 448 K-S-EVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp S-S-TTHHHHHTHHHHHHHHHHHHHC
T ss_pred c-c-HHHHHHHHHHHHHHHHHHHHHH
Confidence 6 3 5566666666666655554444
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=100.00 E-value=8.2e-33 Score=252.22 Aligned_cols=347 Identities=15% Similarity=0.106 Sum_probs=231.9
Q ss_pred CCcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHH---HHhhhhcccch-HHHHHHHHHhhhhhccchh
Q 016442 1 MAGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT---FLTPWAADTSL-LALLAMRAVVGLAEGVALP 76 (389)
Q Consensus 1 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~~~-~~l~~~r~l~G~~~~~~~~ 76 (389)
++|.|++.+.+.++..++++++|+++||+|||+++..+..+.+++. ....+. +.. ..+...+.+.|++.+...+
T Consensus 42 ~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~ 119 (417)
T 2cfq_A 42 KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--PLLQYNILVGSIVGGIYLGFCFN 119 (417)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--HHHHTTCCHHHHGGGSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999888775532 112222 221 1234556666666655555
Q ss_pred hhHHHHhcccCc--CchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcC
Q 016442 77 AMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQI 154 (389)
Q Consensus 77 ~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (389)
.....+.++.++ ++|+...+......++|..++|.+++++.+ .+||+.|++.++..++..+..+..+||++++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~- 197 (417)
T 2cfq_A 120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATV- 197 (417)
T ss_dssp TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCS-
T ss_pred hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccccccc-
Confidence 555555555543 456777888989999999999999999887 5899999988777655444433333333221100
Q ss_pred cHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc---cccchhh
Q 016442 155 SKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYH---IDLRQAS 231 (389)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~ 231 (389)
+ + .+++++++....++++++|+|+++...+..+.....+.....++|.|+++.++ .+....+
T Consensus 198 ~--~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 262 (417)
T 2cfq_A 198 A--N-------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG 262 (417)
T ss_dssp S--S-------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHH
T ss_pred c--c-------------ccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHH
Confidence 0 0 00011112233456788999998877766565555666666778888876544 2344557
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhcccccc
Q 016442 232 WFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF 311 (389)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (389)
...+...++.+++.++.+++.||++|| .....+....++........++.+.......+.........+..
T Consensus 263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHH---------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788889999999999999988 33334444444444444444443333222222121222222334
Q ss_pred chhhhcccc-cchhHHHHH-HHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 312 LVNLQEIAP-QYSGVLHGI-SNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 312 ~~~~~~~~~-~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
..+..|..| +.||++.++ .+...++|+.++|.+.|++.|..| +...|.+.+++.+++.+..+..
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhh
Confidence 567778777 799999999 488889999999999999999887 8888888888877776655443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=6.9e-29 Score=233.30 Aligned_cols=140 Identities=19% Similarity=0.257 Sum_probs=128.1
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhc-CCeehhHHHHHHHHHHHHHhhhhccc-chHHHHHHHHHhhhhhccchhhhH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAADT-SLLALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~ 79 (389)
++.|++.+++.++..++.+++|+++||+ |||+++..+..+.+++.+++.++ + +++.+++.|+++|++.+...+...
T Consensus 54 ~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 54 AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--EHSVQGFYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhccccchhHH
Confidence 5678999999999999999999999999 99999999999999999999998 8 999999999999999999999999
Q ss_pred HHHhcccCcCchhhHHHH---HHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHh
Q 016442 80 NMVARWFPQTERARAVAI---AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
+++.|++|+++|+++.+. .+...++|..++|.+++.+.+..|||+.|++.++..++..+.....
T Consensus 132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999876666 9999999999999999999998999999999888777665555443
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.57 E-value=1.6e-13 Score=127.46 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=136.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----hccccchhhhhhhHHHHHHHHHHHHHHHHHHH-HHHcCCchhhH
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFV-----YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLT 265 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~ 265 (389)
+.++......++....++....+++.|+++. +|.++.+.+++.+...++..++.++.|+++|| +|||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------- 85 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------- 85 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-------
Confidence 4566777788888888999999999999998 89999999999999999999999999999999 8998
Q ss_pred HHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cc--hhHHHHHHHHHhhhhhhHHh
Q 016442 266 RKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QY--SGVLHGISNTAGTFAAILGT 342 (389)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~~~g~~~~~~~~g~~~~~ 342 (389)
..+..+.....+........++.+......++.+...+...+....+..|..| ++ |+.+.+..+...++|..++|
T Consensus 86 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 163 (491)
T 4aps_A 86 --PAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP 163 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH
Confidence 44455555555555555555555555544444444444455666777777766 66 78888989999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 343 VGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 343 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.+.+.+.+..| +...|.+.++..+++.+.....
T Consensus 164 ~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 164 LIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999887 8899888877777666655443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.54 E-value=2.5e-13 Score=124.25 Aligned_cols=173 Identities=11% Similarity=0.027 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
+....+..+.............|.+.++ +|.+..+.+++.+...++..++.++.|+++||+||| ..+..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r---------~~l~~~ 97 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK---------AGIITG 97 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch---------HHHHHH
Confidence 3344555555566666677777775555 899999999999999999999999999999999999 344444
Q ss_pred hhHHHHHHHHH---hhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHH
Q 016442 274 FIAPGIALIGL---TAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV 349 (389)
Q Consensus 274 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 349 (389)
....++..+.. ...++.+.....-++.+...+...+....+..|..| |+|+++.++.+....+|..++|.+.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 445555555554444444444555566777788777 89999999999999999999999999998
Q ss_pred -hhhhh------------------------HHHHHHHHHHHHHHHHHHHHHh
Q 016442 350 -ELVGS------------------------FQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 350 -~~~g~------------------------~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
+..+. +...|...++..++..+.....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 6777776666655555544443
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.52 E-value=1.7e-13 Score=125.73 Aligned_cols=174 Identities=13% Similarity=0.028 Sum_probs=127.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHH
Q 016442 191 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ 270 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 270 (389)
.+.+....+..+........+....|.+.++ + .++.+.+++.+...++..++.++.|+++||+||| ..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r---------~~l 95 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR---------VFL 95 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch---------HHH
Confidence 3445555666666666666677788877777 6 8999999999999999999999999999999999 344
Q ss_pred HHHhhHHHHHHHHHhh----ccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHH
Q 016442 271 SIGFIAPGIALIGLTA----AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGA 345 (389)
Q Consensus 271 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~ 345 (389)
..+.+..++..+.... .++.+..+..-++.+...+...+....+..|..| ++|+++.|+.+....+|..++|.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 96 PAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554444444 4555554444444444444555666777788777 8999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016442 346 GFFVELVGSFQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 346 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
+++.+..|+++..|++.+++.++..+....
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 998887754777888777776655544433
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.49 E-value=3.4e-13 Score=126.35 Aligned_cols=174 Identities=11% Similarity=0.002 Sum_probs=130.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc------cccchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHcCCchhh
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYH------IDLRQASWFSAVPWSVMAFTGYLGGLLSDML-IQRGTSVTL 264 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~ 264 (389)
|.++...+..++...+++....+++.|+++++| +++.+.+++.+...++..++.++.|+++||+ |||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r------ 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY------ 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 456667778888888888999999999998889 9999999999999999999999999999999 988
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcc-chhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHH---HHHHhhhhhh
Q 016442 265 TRKILQSIGFIAPGIALIGLTAAK-SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI---SNTAGTFAAI 339 (389)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~---~~~~~~~g~~ 339 (389)
.....+.+...+..+.....+ +.+......++.+...+...+....+..|..| ++|+++.+. .+...++|..
T Consensus 86 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ 162 (524)
T 2xut_A 86 ---NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF 162 (524)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444 44444444333333344455666677777776 788766665 8899999999
Q ss_pred HHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016442 340 LGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 340 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
++|.+.+.+.+..| +...|.+.+++.+++.+....
T Consensus 163 ~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 163 FASLSMPLLLKNFG-AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877 888888887777666555443
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.44 E-value=9.7e-14 Score=126.15 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=120.5
Q ss_pred cchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhc
Q 016442 5 DRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR 84 (389)
Q Consensus 5 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 84 (389)
|+..+...++..++.++.|+++||+|||+++..+..+.+++.+..++. ++.+.+++..++.+++.+...+....+++|
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777888899999999999999999999998888887777777 788888888888888877777778899999
Q ss_pred ccCcCchhhHHHH-HHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCC
Q 016442 85 WFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 148 (389)
Q Consensus 85 ~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 148 (389)
.+|++.|+.+.+. ++....+|..++|.+++.+.++.|++..|.+.+++.++..+..+...+|++
T Consensus 340 ~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999 588888999999999999998888899999888888777666665555443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.39 E-value=4.2e-13 Score=120.15 Aligned_cols=165 Identities=8% Similarity=-0.009 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhh
Q 016442 196 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI 275 (389)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 275 (389)
...+..++...........+|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+... .+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~---------~~~~ 73 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL---------VGMS 73 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH---------HHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH---------HHHH
Confidence 34556666666777777788877665 8999999999999999999999999999999999985432 2222
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhh
Q 016442 276 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS 354 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 354 (389)
...+........++.+......++.....+...+....+..|..| |+|+++.+..+....+|..++|.+.+.+.+..|
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~- 152 (375)
T 2gfp_A 74 IFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-
Confidence 333333333333444444444444333444455566677777766 899999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016442 355 FQGFLLLTSLLYFLSAL 371 (389)
Q Consensus 355 ~~~~~~~~~~~~~~~~~ 371 (389)
++..+.+.++..++..+
T Consensus 153 ~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 153 WRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888877776665554
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.12 E-value=6e-10 Score=103.31 Aligned_cols=143 Identities=20% Similarity=0.122 Sum_probs=104.7
Q ss_pred hHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc--c-cchHHHHHHHHHhhhhhccchhhhHHHHhc
Q 016442 8 PSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--D-TSLLALLAMRAVVGLAEGVALPAMNNMVAR 84 (389)
Q Consensus 8 ~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 84 (389)
.....+...++.++.+.+.||+|||+.++.+.....++.+..+... . ++...+...-+..+.......+....+.+|
T Consensus 318 ~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 397 (491)
T 4gc0_A 318 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE 397 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455667788889999999999999999999888888776654331 1 122222222222222223345677899999
Q ss_pred ccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc------ccCcchhHHHHhhHHHHHHHHHHHhccCCCCC
Q 016442 85 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDR 150 (389)
Q Consensus 85 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 150 (389)
.+|.+.|++++|+......+|..+++.+.+.+.+ ..++.+.|++.+.++++..+..+++.||.+.+
T Consensus 398 ~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 398 IFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp SSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 9999999999999999999999998887765533 34677888999999988888888888877544
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=48.67 E-value=5 Score=18.40 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=10.1
Q ss_pred hhhhhhhcCCeeh
Q 016442 22 GGTLVDYYGGKII 34 (389)
Q Consensus 22 ~G~l~dr~Grr~~ 34 (389)
.|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4788889998853
No 16
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=34.91 E-value=2.3e+02 Score=24.76 Aligned_cols=31 Identities=0% Similarity=-0.304 Sum_probs=16.8
Q ss_pred hhhhHHHHhcccCcCchhhHHHHHHhhhhhh
Q 016442 75 LPAMNNMVARWFPQTERARAVAIAMGGFTSG 105 (389)
Q Consensus 75 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 105 (389)
..............++|.+.....+....+-
T Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (460)
T 3mkt_A 142 AYLLFQALRSFTDGMSLTKPAMVIGFIGLLL 172 (460)
T ss_dssp HHHHHHHHTTTTCTTSCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3344455556666666666655555544443
No 17
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=32.49 E-value=2.8e+02 Score=25.05 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=29.7
Q ss_pred ccCcCch-hhHHHHHHhhhhhhhhhhhh-hhhHhhcccCcchhHHHHhhHHHHHHHH
Q 016442 85 WFPQTER-ARAVAIAMGGFTSGNAIGLV-LSPILMSQAGIFGPFVIFGLSGFLWVLV 139 (389)
Q Consensus 85 ~~~~~~r-~~~~~~~~~~~~~G~~~g~~-l~~~l~~~~~w~~~f~~~~~~~~~~~~~ 139 (389)
-.|+++| .....+.....+....++.. +++.+....+|+..++...+-.++..+.
T Consensus 19 pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~ 75 (501)
T 2jln_A 19 PTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVIL 75 (501)
T ss_dssp CCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHH
Confidence 3566666 45666666666655555555 3333433456676665544444443333
No 18
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.53 E-value=79 Score=17.60 Aligned_cols=9 Identities=11% Similarity=0.224 Sum_probs=3.6
Q ss_pred HHHHhccCC
Q 016442 372 FYIIFSTGE 380 (389)
Q Consensus 372 ~~~~~~~~~ 380 (389)
.++++++++
T Consensus 30 ~~~~~RRRr 38 (44)
T 2l2t_A 30 FAVYVRRKS 38 (44)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhhhhh
Confidence 334444433
No 19
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.64 E-value=82 Score=17.53 Aligned_cols=10 Identities=0% Similarity=-0.097 Sum_probs=4.1
Q ss_pred HHHHHhccCC
Q 016442 371 LFYIIFSTGE 380 (389)
Q Consensus 371 ~~~~~~~~~~ 380 (389)
..++++++++
T Consensus 30 ~~~~~~RRr~ 39 (44)
T 2ks1_B 30 GIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHhhhhH
Confidence 3334444433
Done!