Query 016444
Match_columns 389
No_of_seqs 204 out of 1395
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 1E-101 3E-106 783.8 32.2 349 38-388 31-382 (524)
2 PLN02998 beta-glucosidase 100.0 7.2E-95 1.6E-99 749.1 31.8 332 19-356 9-341 (497)
3 PLN02814 beta-glucosidase 100.0 1.7E-94 3.7E-99 747.5 31.4 312 39-356 23-335 (504)
4 PLN02849 beta-glucosidase 100.0 5.4E-94 1.2E-98 743.6 32.2 313 39-356 25-337 (503)
5 COG2723 BglB Beta-glucosidase/ 100.0 3.6E-93 7.7E-98 717.0 29.2 302 42-357 2-309 (460)
6 PRK09593 arb 6-phospho-beta-gl 100.0 6.1E-90 1.3E-94 710.8 29.9 300 42-356 4-322 (478)
7 TIGR01233 lacG 6-phospho-beta- 100.0 1.2E-89 2.7E-94 707.2 29.8 293 43-355 3-305 (467)
8 PRK13511 6-phospho-beta-galact 100.0 1.3E-89 2.8E-94 708.1 29.8 294 43-356 4-307 (469)
9 PF00232 Glyco_hydro_1: Glycos 100.0 1.4E-90 3.1E-95 714.0 22.0 303 42-359 3-308 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 1.7E-89 3.8E-94 707.1 30.0 298 43-355 3-320 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 9.1E-89 2E-93 701.5 31.3 303 39-356 1-323 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 8.8E-88 1.9E-92 693.3 30.3 299 43-356 3-319 (474)
13 TIGR03356 BGL beta-galactosida 100.0 5.3E-86 1.1E-90 674.3 29.6 296 44-356 1-296 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.3 6E-12 1.3E-16 127.0 9.4 109 97-210 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.2 2.6E-11 5.7E-16 115.8 9.8 110 98-211 22-135 (281)
16 smart00633 Glyco_10 Glycosyl h 98.7 3.5E-08 7.5E-13 94.7 8.9 84 118-210 1-86 (254)
17 COG1874 LacA Beta-galactosidas 98.4 7.3E-07 1.6E-11 95.7 7.9 107 98-209 31-163 (673)
18 PF01229 Glyco_hydro_39: Glyco 98.1 1E-05 2.3E-10 84.7 9.6 106 99-210 41-168 (486)
19 PF07745 Glyco_hydro_53: Glyco 98.0 0.00039 8.4E-09 69.5 17.7 142 100-276 27-177 (332)
20 COG2730 BglC Endoglucanase [Ca 98.0 2.7E-05 5.9E-10 79.8 9.1 110 100-209 76-193 (407)
21 PF00331 Glyco_hydro_10: Glyco 97.7 0.00022 4.8E-09 70.9 10.2 125 44-210 6-137 (320)
22 PF01301 Glyco_hydro_35: Glyco 97.5 0.00045 9.8E-09 68.7 8.7 109 98-208 25-151 (319)
23 PLN03059 beta-galactosidase; P 96.9 0.0045 9.8E-08 68.2 10.2 108 97-207 59-187 (840)
24 PF01373 Glyco_hydro_14: Glyco 96.9 0.0013 2.8E-08 66.9 4.9 99 96-198 15-144 (402)
25 PF02836 Glyco_hydro_2_C: Glyc 96.8 0.0076 1.6E-07 59.0 9.8 93 95-207 34-132 (298)
26 PLN02161 beta-amylase 96.7 0.0056 1.2E-07 63.6 8.4 110 93-208 113-261 (531)
27 PF14587 Glyco_hydr_30_2: O-Gl 96.7 0.011 2.4E-07 59.9 10.3 101 107-209 57-185 (384)
28 PLN02803 beta-amylase 96.7 0.0049 1.1E-07 64.4 7.9 101 94-198 104-243 (548)
29 PF13204 DUF4038: Protein of u 96.5 0.022 4.8E-07 55.8 10.8 104 99-207 32-156 (289)
30 PLN00197 beta-amylase; Provisi 96.5 0.011 2.4E-07 62.0 8.8 100 95-198 125-263 (573)
31 PLN02801 beta-amylase 96.3 0.023 5E-07 59.2 9.9 101 94-198 34-173 (517)
32 PLN02905 beta-amylase 96.3 0.02 4.3E-07 60.9 9.4 101 93-197 282-421 (702)
33 COG3867 Arabinogalactan endo-1 96.3 0.27 5.9E-06 48.3 16.4 137 42-208 33-182 (403)
34 PRK10150 beta-D-glucuronidase; 96.2 0.02 4.4E-07 61.7 9.4 94 97-208 313-419 (604)
35 PLN02705 beta-amylase 96.0 0.028 6E-07 59.6 8.9 100 94-197 265-403 (681)
36 COG3693 XynA Beta-1,4-xylanase 96.0 0.022 4.7E-07 56.3 7.6 95 108-209 57-153 (345)
37 PF14488 DUF4434: Domain of un 95.0 0.19 4E-06 45.5 9.6 103 97-208 20-131 (166)
38 PRK09525 lacZ beta-D-galactosi 94.3 0.2 4.3E-06 57.5 9.6 91 95-208 369-464 (1027)
39 KOG0496 Beta-galactosidase [Ca 94.0 0.42 9.1E-06 51.4 10.6 108 98-208 50-176 (649)
40 PRK10340 ebgA cryptic beta-D-g 93.6 0.35 7.6E-06 55.5 10.0 91 95-208 353-451 (1021)
41 COG3250 LacZ Beta-galactosidas 91.0 1.3 2.7E-05 49.6 9.9 91 93-209 317-409 (808)
42 COG3664 XynB Beta-xylosidase [ 89.3 0.67 1.5E-05 47.4 5.5 101 106-212 14-119 (428)
43 PF10566 Glyco_hydro_97: Glyco 86.0 7.7 0.00017 38.0 10.5 120 70-193 9-149 (273)
44 PF07488 Glyco_hydro_67M: Glyc 83.6 10 0.00022 37.6 10.1 87 96-196 56-150 (328)
45 COG3934 Endo-beta-mannanase [C 83.0 0.59 1.3E-05 48.7 1.4 110 98-209 27-150 (587)
46 smart00642 Aamy Alpha-amylase 82.8 4 8.6E-05 36.7 6.6 65 94-159 16-91 (166)
47 PF12891 Glyco_hydro_44: Glyco 81.5 5 0.00011 38.4 6.9 171 138-350 24-237 (239)
48 PF03198 Glyco_hydro_72: Gluca 77.7 9 0.0002 38.1 7.6 90 97-206 53-144 (314)
49 PF02638 DUF187: Glycosyl hydr 76.1 13 0.00028 36.9 8.3 100 96-195 18-154 (311)
50 PF00128 Alpha-amylase: Alpha 75.5 7 0.00015 37.1 6.2 59 99-159 6-73 (316)
51 PLN02361 alpha-amylase 74.5 8.8 0.00019 39.6 6.9 65 94-158 26-96 (401)
52 cd07945 DRE_TIM_CMS Leptospira 70.9 12 0.00026 36.6 6.6 83 99-192 76-158 (280)
53 PF14871 GHL6: Hypothetical gl 70.4 20 0.00044 31.1 7.2 57 101-160 4-66 (132)
54 PLN00196 alpha-amylase; Provis 70.3 9.5 0.00021 39.6 6.1 64 95-158 42-112 (428)
55 PRK12313 glycogen branching en 69.8 19 0.00042 39.2 8.6 94 95-195 168-302 (633)
56 cd02803 OYE_like_FMN_family Ol 69.2 1.2E+02 0.0026 29.7 14.1 144 122-290 62-230 (327)
57 PRK05402 glycogen branching en 68.6 22 0.00047 39.5 8.8 93 96-195 264-397 (726)
58 cd03174 DRE_TIM_metallolyase D 68.5 16 0.00034 34.5 6.8 62 100-161 77-138 (265)
59 KOG2233 Alpha-N-acetylglucosam 67.9 29 0.00062 36.7 8.7 112 96-207 77-248 (666)
60 cd07939 DRE_TIM_NifV Streptomy 66.6 19 0.00041 34.5 6.9 59 100-158 72-130 (259)
61 PF12876 Cellulase-like: Sugar 66.1 3.6 7.7E-05 32.8 1.5 19 190-208 1-22 (88)
62 PRK05692 hydroxymethylglutaryl 65.8 20 0.00043 35.2 7.0 87 98-193 80-167 (287)
63 PRK05799 coproporphyrinogen II 65.4 18 0.00038 36.5 6.8 96 100-212 99-197 (374)
64 PRK09441 cytoplasmic alpha-amy 64.6 13 0.00029 38.9 5.9 66 94-159 19-102 (479)
65 TIGR02402 trehalose_TreZ malto 64.2 30 0.00066 37.0 8.6 93 95-195 109-237 (542)
66 TIGR02403 trehalose_treC alpha 64.0 14 0.0003 39.5 6.0 64 94-159 24-96 (543)
67 cd02932 OYE_YqiM_FMN Old yello 63.8 1.6E+02 0.0035 29.2 15.2 39 122-161 62-100 (336)
68 cd06543 GH18_PF-ChiA-like PF-C 62.8 36 0.00078 33.5 8.2 85 104-196 19-105 (294)
69 PLN02746 hydroxymethylglutaryl 62.4 24 0.00052 35.7 7.0 85 99-192 123-208 (347)
70 PRK14040 oxaloacetate decarbox 62.1 28 0.00061 37.8 7.9 97 96-210 91-212 (593)
71 PRK12581 oxaloacetate decarbox 62.0 28 0.0006 36.7 7.6 58 95-166 98-160 (468)
72 PRK14041 oxaloacetate decarbox 61.6 28 0.00062 36.6 7.6 56 95-164 88-148 (467)
73 cd07948 DRE_TIM_HCS Saccharomy 61.2 14 0.00031 35.7 5.0 60 100-159 74-133 (262)
74 cd06593 GH31_xylosidase_YicI Y 60.9 61 0.0013 31.7 9.5 105 99-207 26-160 (308)
75 PRK14705 glycogen branching en 60.5 50 0.0011 38.9 9.9 98 96-195 764-897 (1224)
76 PRK10933 trehalose-6-phosphate 59.3 20 0.00042 38.6 6.1 64 94-159 30-102 (551)
77 TIGR01515 branching_enzym alph 59.3 60 0.0013 35.3 9.9 100 96-195 155-288 (613)
78 PLN02784 alpha-amylase 59.1 26 0.00057 39.5 7.1 65 94-158 518-588 (894)
79 COG3589 Uncharacterized conser 58.8 43 0.00094 33.7 7.8 72 100-186 19-90 (360)
80 TIGR02090 LEU1_arch isopropylm 58.8 30 0.00064 35.1 7.0 63 98-160 72-134 (363)
81 cd04733 OYE_like_2_FMN Old yel 57.6 2.1E+02 0.0045 28.5 15.4 144 121-290 63-238 (338)
82 cd06592 GH31_glucosidase_KIAA1 57.2 53 0.0012 32.2 8.4 106 99-208 32-167 (303)
83 PRK09505 malS alpha-amylase; R 56.4 23 0.0005 39.1 6.1 63 97-159 230-313 (683)
84 PF03659 Glyco_hydro_71: Glyco 56.1 52 0.0011 33.8 8.3 51 97-158 17-67 (386)
85 PLN02447 1,4-alpha-glucan-bran 56.0 24 0.00051 39.5 6.1 101 95-195 248-383 (758)
86 TIGR02660 nifV_homocitr homoci 54.6 37 0.0008 34.4 6.9 60 100-159 75-134 (365)
87 TIGR01210 conserved hypothetic 53.2 91 0.002 30.9 9.3 108 100-222 117-229 (313)
88 PRK11858 aksA trans-homoaconit 53.0 46 0.001 33.9 7.3 60 100-159 78-137 (378)
89 TIGR02456 treS_nterm trehalose 52.9 21 0.00046 38.1 5.0 60 96-159 27-97 (539)
90 TIGR00433 bioB biotin syntheta 52.6 40 0.00087 32.5 6.6 55 100-158 123-178 (296)
91 PRK13523 NADPH dehydrogenase N 52.4 2.6E+02 0.0056 28.1 14.1 135 130-290 73-229 (337)
92 COG1523 PulA Type II secretory 52.3 32 0.00069 38.1 6.3 57 103-159 206-286 (697)
93 PRK12858 tagatose 1,6-diphosph 51.8 61 0.0013 32.7 7.8 52 103-158 112-163 (340)
94 COG0821 gcpE 1-hydroxy-2-methy 51.2 1.3E+02 0.0027 30.5 9.6 87 91-192 78-164 (361)
95 cd02874 GH18_CFLE_spore_hydrol 51.0 71 0.0015 31.2 8.1 84 103-195 16-103 (313)
96 TIGR03217 4OH_2_O_val_ald 4-hy 50.9 1.7E+02 0.0038 29.3 10.9 80 100-196 90-187 (333)
97 cd07937 DRE_TIM_PC_TC_5S Pyruv 50.3 1E+02 0.0023 29.8 9.1 47 99-159 93-139 (275)
98 cd06602 GH31_MGAM_SI_GAA This 49.8 1.2E+02 0.0026 30.4 9.6 68 141-209 69-168 (339)
99 PRK12331 oxaloacetate decarbox 49.6 69 0.0015 33.6 8.1 94 99-210 98-211 (448)
100 PRK14511 maltooligosyl trehalo 49.0 35 0.00075 38.8 6.1 57 96-159 19-90 (879)
101 cd06599 GH31_glycosidase_Aec37 48.9 1.5E+02 0.0033 29.2 10.1 110 99-209 31-171 (317)
102 cd07938 DRE_TIM_HMGL 3-hydroxy 48.5 72 0.0016 31.0 7.6 84 100-192 76-160 (274)
103 TIGR02100 glgX_debranch glycog 48.4 29 0.00064 38.3 5.4 57 103-159 190-266 (688)
104 cd06601 GH31_lyase_GLase GLase 48.2 82 0.0018 31.6 8.1 71 141-213 67-140 (332)
105 cd06598 GH31_transferase_CtsZ 47.8 1.5E+02 0.0032 29.3 9.9 110 99-210 26-168 (317)
106 COG3534 AbfA Alpha-L-arabinofu 47.5 1.1E+02 0.0024 32.1 9.0 87 99-207 50-174 (501)
107 PRK10785 maltodextrin glucosid 46.5 38 0.00083 36.7 5.8 59 97-159 179-247 (598)
108 PF03511 Fanconi_A: Fanconi an 46.0 14 0.00031 27.9 1.7 38 121-161 19-56 (64)
109 TIGR03471 HpnJ hopanoid biosyn 46.0 80 0.0017 32.9 8.0 76 100-189 287-364 (472)
110 PRK03705 glycogen debranching 45.9 49 0.0011 36.4 6.6 55 103-159 185-263 (658)
111 PF02065 Melibiase: Melibiase; 45.3 1E+02 0.0022 31.8 8.4 95 98-195 59-183 (394)
112 PRK09058 coproporphyrinogen II 45.1 97 0.0021 32.3 8.4 105 100-221 163-270 (449)
113 PRK05474 xylose isomerase; Pro 45.0 3.9E+02 0.0084 28.0 14.0 92 98-197 80-181 (437)
114 cd07943 DRE_TIM_HOA 4-hydroxy- 44.8 2.3E+02 0.005 27.0 10.4 46 100-159 88-133 (263)
115 PRK12568 glycogen branching en 44.7 39 0.00085 37.6 5.6 95 96-195 268-401 (730)
116 TIGR03234 OH-pyruv-isom hydrox 44.6 64 0.0014 30.3 6.5 67 95-164 82-150 (254)
117 PRK08255 salicylyl-CoA 5-hydro 44.4 5E+02 0.011 29.0 15.9 144 121-290 459-640 (765)
118 COG1501 Alpha-glucosidases, fa 43.8 90 0.0019 35.1 8.3 101 109-213 294-422 (772)
119 cd06603 GH31_GANC_GANAB_alpha 43.6 1.5E+02 0.0033 29.5 9.3 71 141-211 67-167 (339)
120 cd06600 GH31_MGAM-like This fa 43.4 1.7E+02 0.0038 28.9 9.6 70 140-210 66-164 (317)
121 cd06565 GH20_GcnA-like Glycosy 43.2 1E+02 0.0022 30.4 7.8 64 98-168 18-87 (301)
122 cd02742 GH20_hexosaminidase Be 42.5 80 0.0017 31.0 7.0 65 98-168 17-99 (303)
123 cd06542 GH18_EndoS-like Endo-b 42.4 87 0.0019 29.5 7.1 55 137-195 50-104 (255)
124 cd06525 GH25_Lyc-like Lyc mura 42.4 2.4E+02 0.0052 25.3 9.7 50 102-164 13-62 (184)
125 PRK12399 tagatose 1,6-diphosph 42.3 1.3E+02 0.0029 30.2 8.3 58 103-164 111-168 (324)
126 PRK14510 putative bifunctional 42.0 33 0.00071 40.5 4.7 65 95-159 183-268 (1221)
127 PLN02960 alpha-amylase 41.8 51 0.0011 37.4 5.9 95 94-195 413-549 (897)
128 TIGR02401 trehalose_TreY malto 41.6 52 0.0011 37.2 6.0 57 96-159 15-86 (825)
129 PF05089 NAGLU: Alpha-N-acetyl 41.5 65 0.0014 32.5 6.1 110 96-207 18-184 (333)
130 PRK04161 tagatose 1,6-diphosph 41.5 1.4E+02 0.0029 30.1 8.3 59 102-164 112-170 (329)
131 PRK14706 glycogen branching en 41.1 1.7E+02 0.0036 32.2 9.7 90 104-195 175-299 (639)
132 TIGR01108 oadA oxaloacetate de 40.8 1.1E+02 0.0023 33.3 8.1 94 99-210 93-206 (582)
133 PRK07379 coproporphyrinogen II 40.7 77 0.0017 32.5 6.8 103 100-220 115-221 (400)
134 TIGR00539 hemN_rel putative ox 40.3 77 0.0017 31.8 6.6 60 100-164 100-162 (360)
135 smart00729 Elp3 Elongator prot 39.3 2E+02 0.0043 25.1 8.5 57 98-158 98-157 (216)
136 TIGR02630 xylose_isom_A xylose 38.9 4.8E+02 0.01 27.3 13.9 90 99-197 80-180 (434)
137 cd07944 DRE_TIM_HOA_like 4-hyd 38.6 74 0.0016 30.7 5.9 47 100-160 85-131 (266)
138 cd07941 DRE_TIM_LeuA3 Desulfob 38.5 56 0.0012 31.6 5.1 81 101-192 82-162 (273)
139 PF01261 AP_endonuc_2: Xylose 38.0 34 0.00074 30.3 3.3 62 95-156 69-130 (213)
140 COG0366 AmyA Glycosidases [Car 38.0 42 0.00091 34.6 4.4 57 101-158 33-97 (505)
141 cd02933 OYE_like_FMN Old yello 37.8 4.3E+02 0.0093 26.4 16.5 40 122-162 62-101 (338)
142 cd07947 DRE_TIM_Re_CS Clostrid 37.7 1.1E+02 0.0025 29.8 7.1 60 99-158 76-135 (279)
143 cd06545 GH18_3CO4_chitinase Th 36.4 1E+02 0.0022 29.2 6.4 73 117-195 27-99 (253)
144 PRK06294 coproporphyrinogen II 36.4 1.2E+02 0.0026 30.7 7.3 94 100-210 103-199 (370)
145 PRK13398 3-deoxy-7-phosphohept 36.3 1.6E+02 0.0034 28.7 7.8 73 92-168 36-108 (266)
146 cd06591 GH31_xylosidase_XylS X 35.9 2.6E+02 0.0057 27.6 9.5 71 140-211 68-164 (319)
147 PRK10605 N-ethylmaleimide redu 35.8 4.8E+02 0.01 26.4 17.0 191 130-346 71-321 (362)
148 PRK08599 coproporphyrinogen II 35.4 1.8E+02 0.0039 29.3 8.4 97 99-212 99-198 (377)
149 TIGR02635 RhaI_grampos L-rhamn 35.2 1.3E+02 0.0028 30.9 7.2 84 100-201 43-136 (378)
150 PTZ00445 p36-lilke protein; Pr 35.2 63 0.0014 30.6 4.6 49 140-192 31-89 (219)
151 PRK01060 endonuclease IV; Prov 34.7 1.8E+02 0.0038 27.6 7.9 51 99-155 14-64 (281)
152 COG3623 SgaU Putative L-xylulo 34.1 95 0.0021 30.0 5.6 106 98-212 19-164 (287)
153 PRK05628 coproporphyrinogen II 34.0 2.4E+02 0.0052 28.4 9.1 97 99-212 107-206 (375)
154 PTZ00445 p36-lilke protein; Pr 33.6 82 0.0018 29.8 5.1 56 103-159 35-99 (219)
155 TIGR03581 EF_0839 conserved hy 33.0 1.6E+02 0.0034 28.1 6.8 79 92-183 130-230 (236)
156 cd07940 DRE_TIM_IPMS 2-isoprop 32.8 1.4E+02 0.0031 28.5 6.9 79 100-192 72-154 (268)
157 KOG0470 1,4-alpha-glucan branc 32.8 57 0.0012 36.1 4.4 65 96-160 253-333 (757)
158 PF04914 DltD_C: DltD C-termin 32.7 1.8E+02 0.0039 25.2 6.8 53 138-197 36-91 (130)
159 PF09713 A_thal_3526: Plant pr 32.6 40 0.00087 24.8 2.3 35 141-186 16-51 (54)
160 PLN02389 biotin synthase 32.1 1.4E+02 0.003 30.6 7.0 58 98-159 176-234 (379)
161 KOG1065 Maltase glucoamylase a 31.8 2E+02 0.0042 32.5 8.3 105 101-212 315-454 (805)
162 cd06568 GH20_SpHex_like A subg 31.5 1.8E+02 0.004 29.0 7.6 73 90-168 9-102 (329)
163 cd02929 TMADH_HD_FMN Trimethyl 31.4 5.6E+02 0.012 25.9 14.4 130 130-283 75-232 (370)
164 PRK12677 xylose isomerase; Pro 31.2 4.1E+02 0.0089 27.2 10.2 91 99-197 33-129 (384)
165 cd06570 GH20_chitobiase-like_1 31.2 1.9E+02 0.0042 28.6 7.6 65 98-168 19-95 (311)
166 PRK09856 fructoselysine 3-epim 30.9 75 0.0016 30.1 4.6 62 94-157 87-148 (275)
167 TIGR01589 A_thal_3526 uncharac 30.9 65 0.0014 24.0 3.1 36 141-187 19-55 (57)
168 TIGR01212 radical SAM protein, 30.5 1.6E+02 0.0034 29.0 6.9 73 137-222 162-234 (302)
169 PF01055 Glyco_hydro_31: Glyco 30.3 2.2E+02 0.0048 29.2 8.3 109 98-210 44-184 (441)
170 PRK12330 oxaloacetate decarbox 30.2 1.9E+02 0.0041 30.9 7.7 95 99-210 99-214 (499)
171 PRK00366 ispG 4-hydroxy-3-meth 30.2 3E+02 0.0066 28.0 8.7 74 107-192 98-171 (360)
172 cd00019 AP2Ec AP endonuclease 29.5 2.7E+02 0.0058 26.5 8.2 54 97-156 10-64 (279)
173 PRK09282 pyruvate carboxylase 29.1 2.1E+02 0.0045 31.2 8.0 94 99-210 98-211 (592)
174 PRK08195 4-hyroxy-2-oxovalerat 29.0 1.2E+02 0.0027 30.4 5.9 47 100-160 91-137 (337)
175 PRK08208 coproporphyrinogen II 28.6 2.2E+02 0.0048 29.4 7.9 60 100-164 141-203 (430)
176 COG5016 Pyruvate/oxaloacetate 28.3 2.3E+02 0.0051 29.5 7.6 57 95-165 91-152 (472)
177 PRK13209 L-xylulose 5-phosphat 28.3 5.1E+02 0.011 24.5 9.9 54 98-156 22-75 (283)
178 PRK14507 putative bifunctional 27.9 1.1E+02 0.0023 37.6 5.9 57 96-159 757-828 (1693)
179 PRK09936 hypothetical protein; 27.8 5.4E+02 0.012 25.6 9.8 62 98-168 39-100 (296)
180 TIGR00542 hxl6Piso_put hexulos 27.6 1.2E+02 0.0026 28.9 5.4 62 95-158 92-153 (279)
181 PRK08446 coproporphyrinogen II 27.4 3.4E+02 0.0073 27.2 8.8 92 100-208 98-192 (350)
182 PRK09249 coproporphyrinogen II 27.3 2.4E+02 0.0052 29.3 8.0 61 99-164 150-213 (453)
183 PRK07094 biotin synthase; Prov 25.8 1.2E+02 0.0027 29.6 5.2 62 98-164 127-190 (323)
184 TIGR00612 ispG_gcpE 1-hydroxy- 25.4 2.2E+02 0.0048 28.8 6.8 87 91-192 76-162 (346)
185 cd06604 GH31_glucosidase_II_Ma 25.3 5.4E+02 0.012 25.5 9.8 68 141-210 67-163 (339)
186 PF00682 HMGL-like: HMGL-like 25.0 1.9E+02 0.0042 26.8 6.2 76 104-193 74-149 (237)
187 cd06595 GH31_xylosidase_XylS-l 24.9 6.2E+02 0.013 24.6 9.9 109 100-210 28-163 (292)
188 PF04028 DUF374: Domain of unk 24.9 2.3E+02 0.005 22.0 5.5 40 104-158 27-66 (74)
189 PRK13347 coproporphyrinogen II 24.8 1.6E+02 0.0035 30.6 6.1 59 100-164 152-214 (453)
190 PF13812 PPR_3: Pentatricopept 24.7 54 0.0012 20.1 1.6 14 141-154 21-34 (34)
191 PRK10426 alpha-glucosidase; Pr 24.7 6.3E+02 0.014 27.8 10.8 106 99-207 223-364 (635)
192 PF04055 Radical_SAM: Radical 24.5 2.2E+02 0.0047 23.6 6.0 52 100-154 90-143 (166)
193 PRK12755 phospho-2-dehydro-3-d 24.5 3.4E+02 0.0074 27.7 8.0 78 92-169 63-156 (353)
194 cd06562 GH20_HexA_HexB-like Be 23.9 2.2E+02 0.0047 28.6 6.6 72 90-168 9-97 (348)
195 TIGR01232 lacD tagatose 1,6-di 23.8 4.1E+02 0.0088 26.8 8.3 58 103-164 112-169 (325)
196 TIGR02629 L_rham_iso_rhiz L-rh 22.9 3.2E+02 0.007 28.4 7.6 89 99-202 72-171 (412)
197 TIGR00542 hxl6Piso_put hexulos 22.7 6.6E+02 0.014 23.7 10.2 54 98-156 17-70 (279)
198 PRK13210 putative L-xylulose 5 22.6 1.5E+02 0.0034 28.0 5.1 61 95-158 92-153 (284)
199 cd06522 GH25_AtlA-like AtlA is 22.3 4.7E+02 0.01 23.6 8.0 50 101-165 16-67 (192)
200 PF10566 Glyco_hydro_97: Glyco 22.2 1.4E+02 0.003 29.3 4.6 61 99-171 108-168 (273)
201 PF02057 Glyco_hydro_59: Glyco 22.1 1.6E+02 0.0035 32.5 5.5 65 142-209 116-185 (669)
202 PRK13210 putative L-xylulose 5 21.9 5.1E+02 0.011 24.4 8.6 54 99-157 18-71 (284)
203 TIGR00587 nfo apurinic endonuc 21.9 2.3E+02 0.005 27.2 6.2 57 99-161 13-69 (274)
204 PF11790 Glyco_hydro_cc: Glyco 21.8 70 0.0015 30.3 2.5 24 185-209 54-77 (239)
205 TIGR02026 BchE magnesium-proto 21.8 3.5E+02 0.0076 28.5 8.0 60 100-164 287-348 (497)
206 TIGR00423 radical SAM domain p 21.7 4.7E+02 0.01 25.5 8.4 58 99-164 106-170 (309)
207 TIGR00674 dapA dihydrodipicoli 21.6 4.2E+02 0.0091 25.5 8.0 67 129-209 13-79 (285)
208 PRK05904 coproporphyrinogen II 21.5 5.4E+02 0.012 25.8 9.0 93 100-209 103-198 (353)
209 PRK11572 copper homeostasis pr 21.5 2.3E+02 0.0051 27.3 5.9 43 95-147 71-113 (248)
210 PRK09389 (R)-citramalate synth 21.2 1.5E+02 0.0033 31.4 5.1 108 99-210 75-200 (488)
211 PLN02925 4-hydroxy-3-methylbut 21.1 2.9E+02 0.0063 30.8 7.1 53 139-192 211-263 (733)
212 PRK10658 putative alpha-glucos 20.9 6.4E+02 0.014 27.9 9.9 101 103-207 289-419 (665)
213 cd00950 DHDPS Dihydrodipicolin 20.6 4.2E+02 0.0092 25.3 7.8 66 129-208 15-80 (284)
214 PRK10528 multifunctional acyl- 20.5 2.8E+02 0.006 24.8 6.1 95 84-195 48-142 (191)
215 COG3142 CutC Uncharacterized p 20.3 4.2E+02 0.0091 25.5 7.2 57 95-158 71-148 (241)
216 TIGR02631 xylA_Arthro xylose i 20.1 7.2E+02 0.016 25.4 9.6 92 98-197 33-130 (382)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-101 Score=783.78 Aligned_cols=349 Identities=54% Similarity=0.961 Sum_probs=325.4
Q ss_pred ccccCCCCCCCeeccccccccccCcccCCCCccceecccccC-CCccCCCCCCCccCcchhchHHHHHHHHHcCCCeEEe
Q 016444 38 DVKRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHI-PGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRF 116 (389)
Q Consensus 38 ~~~~~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~~~-~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~Rf 116 (389)
++.+..||++|+||+||||||+|||+++|||++|+||+|+|. |+++.++.++|+|||+||||+|||+|||+||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 567889999999999999999999999999999999999985 4477778889999999999999999999999999999
Q ss_pred ccccCccccCCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhC
Q 016444 117 SISWPRILPKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 117 si~Wsri~P~~~-~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~g 195 (389)
||+||||+|.|. .+.+|++||+||+++|++|+++||+|+|||+|||+|++|+++||||+|+++++.|.+||+.||++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999995 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCccccccccccCccCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Q 016444 196 DRVKYWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVL 275 (389)
Q Consensus 196 d~V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~~~~~~~~~kIG~~~ 275 (389)
|+||+|+|||||++++..||..|..|||+|+.+..+|..+++.++.|.|.|||++|||+||++||+.++..++|+||+++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999999998778999999999999999999999999999999998888999999999
Q ss_pred cCcccccCCCChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhccCCCCCHHHHHHhcCCccEEEeccccCceeec
Q 016444 276 HSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQLPRFSKEETKYVKGSLDFIGINHYSTLYAKD 355 (389)
Q Consensus 276 ~~~~~yP~~~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~~d~~~ik~~~DFiGiNYY~s~~v~~ 355 (389)
+..|+.|++.+++|..||+|+.+|..+|+++|++.|+||+.|++.++.|||.||++|.++|||+.||+|||||++.+|+.
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999998
Q ss_pred CCCCCccCCCCcccCcceEeeccCCC-eecCCCC
Q 016444 356 CIHSVCVLGSNHAIRGFVYTTGERDG-IMIGEPV 388 (389)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~g~~~ 388 (389)
...+.+...+.+..|..+.. ..+| ..||+..
T Consensus 351 ~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~ 382 (524)
T KOG0626|consen 351 LKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKA 382 (524)
T ss_pred cCCCCCCCCcccccccceee--eecccccccccc
Confidence 76654422333777777666 3344 6666543
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=7.2e-95 Score=749.14 Aligned_cols=332 Identities=48% Similarity=0.917 Sum_probs=298.3
Q ss_pred HHHHHhhhhcccCCCCcccccccCCCCCCCeeccccccccccCcccCCCCccceecccccCCCccCCCCCCCccCcchhc
Q 016444 19 QLWPVLSLAKSTCNENEQVDVKRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHR 98 (389)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~ 98 (389)
-+.|++.|+. ++.+...+.+.+||++|+||+|||||||||++++||||+|+||.+++ ++ ..+..++++|||||||
T Consensus 9 ~~~~~~~~~~---~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~-~~~~~~~~~a~D~Yhr 83 (497)
T PLN02998 9 MFLPLLALAL---TAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AG-HSGVAAGNVACDQYHK 83 (497)
T ss_pred hHHHHHHhcc---cccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cC-cCCCCCCcccccHHHh
Confidence 3456666663 22233335677899999999999999999999999999999999987 34 2222478899999999
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChH
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQ 178 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~ 178 (389)
|+|||+|||+||+++|||||+||||+|+| +|.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||+|++
T Consensus 84 y~EDi~lmk~lG~~~YRfSIsWsRI~P~G-~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~ 162 (497)
T PLN02998 84 YKEDVKLMADMGLEAYRFSISWSRLLPSG-RGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQE 162 (497)
T ss_pred hHHHHHHHHHcCCCeEEeeccHHhcCcCC-CCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCch
Confidence 99999999999999999999999999998 58899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCceEEEEecCCccccccccccCccCCCCCCCC-CCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 016444 179 MQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTYPPTHCSAP-FGNCSAGNSDTEPLIVLHNMLLSHAKAVK 257 (389)
Q Consensus 179 ~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~-~~~~~~~~~~~~~~~~~hn~llAHa~Av~ 257 (389)
+++.|++||++|+++|||+|++|+|||||++++..||..|.+|||.+... ...|..+++.++.+|+.||+++|||+||+
T Consensus 163 ~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~ 242 (497)
T PLN02998 163 IVRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATI 242 (497)
T ss_pred HHHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964311 01255445556789999999999999999
Q ss_pred HHHHhhccCCCceEEEEecCcccccCCCChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhccCCCCCHHHHHHhc
Q 016444 258 LYRKHFQEKQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQLPRFSKEETKYVK 337 (389)
Q Consensus 258 ~~r~~~~~~~~~kIG~~~~~~~~yP~~~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~~d~~~ik 337 (389)
++|++++..++++||++++..++||.+++|+|++||++++++.++||+||+++|+||+.+++.+++++|.+|++|+++|+
T Consensus 243 ~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~ 322 (497)
T PLN02998 243 LYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVK 322 (497)
T ss_pred HHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhc
Confidence 99997654678999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred CCccEEEeccccCceeecC
Q 016444 338 GSLDFIGINHYSTLYAKDC 356 (389)
Q Consensus 338 ~~~DFiGiNYY~s~~v~~~ 356 (389)
+++||||||||+|.+|+..
T Consensus 323 ~~~DFlGiNyYts~~v~~~ 341 (497)
T PLN02998 323 GAFDFVGVINYMALYVKDN 341 (497)
T ss_pred CCCCEEEEchhcCcccccC
Confidence 9999999999999999853
No 3
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.7e-94 Score=747.46 Aligned_cols=312 Identities=49% Similarity=0.899 Sum_probs=287.6
Q ss_pred cccCCCCCCCeeccccccccccCcccCCCCccceecccccCCCccCCCCCCCccCcchhchHHHHHHHHHcCCCeEEecc
Q 016444 39 VKRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSI 118 (389)
Q Consensus 39 ~~~~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~Rfsi 118 (389)
+.+.+||++|+||+|||||||||++++||||+|+||++++. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 44567999999999999999999999999999999998873 23468899999999999999999999999999999
Q ss_pred ccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhCCCc
Q 016444 119 SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRV 198 (389)
Q Consensus 119 ~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V 198 (389)
+||||+|+| +|.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|
T Consensus 99 sWsRI~P~G-~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrV 177 (504)
T PLN02814 99 SWSRLIPNG-RGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDV 177 (504)
T ss_pred cHhhcCcCC-CCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcC
Confidence 999999998 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCccccccccccCccCCCCCCCCC-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecC
Q 016444 199 KYWATLNEPNLLTDMAYIRGTYPPTHCSAPF-GNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHS 277 (389)
Q Consensus 199 ~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~-~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~~~~~~~~~kIG~~~~~ 277 (389)
++|+|||||++++..||..|.. ||.+.... .+|..+++.++.++++||+++|||+||+++|++++..++++||++++.
T Consensus 178 k~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~ 256 (504)
T PLN02814 178 KLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFA 256 (504)
T ss_pred CEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeC
Confidence 9999999999999999998884 87644210 135434445678999999999999999999997655688999999999
Q ss_pred cccccCCCChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhccCCCCCHHHHHHhcCCccEEEeccccCceeecC
Q 016444 278 MMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQLPRFSKEETKYVKGSLDFIGINHYSTLYAKDC 356 (389)
Q Consensus 278 ~~~yP~~~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~~d~~~ik~~~DFiGiNYY~s~~v~~~ 356 (389)
.++||++++|+|+.||++++++.++||+||+++|+||..|++.+++++|.+|++|+++|++++||||||||+|.+|+..
T Consensus 257 ~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~ 335 (504)
T PLN02814 257 FGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNR 335 (504)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccC
Confidence 9999999999999999999999999999999999999999999998899999999999999999999999999999753
No 4
>PLN02849 beta-glucosidase
Probab=100.00 E-value=5.4e-94 Score=743.59 Aligned_cols=313 Identities=49% Similarity=0.943 Sum_probs=289.3
Q ss_pred cccCCCCCCCeeccccccccccCcccCCCCccceecccccCCCccCCCCCCCccCcchhchHHHHHHHHHcCCCeEEecc
Q 016444 39 VKRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSI 118 (389)
Q Consensus 39 ~~~~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~Rfsi 118 (389)
+.+.+||++|+||+|||||||||++++||||+|+||++++.++ +.++++||||||||+|||+|||+||+++|||||
T Consensus 25 ~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~----~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSI 100 (503)
T PLN02849 25 YSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN----MSNGDIACDGYHKYKEDVKLMVETGLDAFRFSI 100 (503)
T ss_pred CccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC----CCCCCccccHHHhHHHHHHHHHHcCCCeEEEec
Confidence 5667899999999999999999999999999999999987643 457889999999999999999999999999999
Q ss_pred ccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhCCCc
Q 016444 119 SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRV 198 (389)
Q Consensus 119 ~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V 198 (389)
+||||+|+| +|.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++|||+|
T Consensus 101 sWsRI~P~G-~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrV 179 (503)
T PLN02849 101 SWSRLIPNG-RGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHV 179 (503)
T ss_pred cHHhcCcCC-CCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 999999998 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCccccccccccCccCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecCc
Q 016444 199 KYWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSM 278 (389)
Q Consensus 199 ~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~~~~~~~~~kIG~~~~~~ 278 (389)
++|+|||||++++..||..|.+|||.+......|..+++.++.+++.||+++|||+||+++|++++..++++||++++..
T Consensus 180 k~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~ 259 (503)
T PLN02849 180 KFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFAL 259 (503)
T ss_pred CEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECc
Confidence 99999999999999999999999996431101343334446789999999999999999999975434789999999999
Q ss_pred ccccCCCChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhccCCCCCHHHHHHhcCCccEEEeccccCceeecC
Q 016444 279 MYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQLPRFSKEETKYVKGSLDFIGINHYSTLYAKDC 356 (389)
Q Consensus 279 ~~yP~~~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~~d~~~ik~~~DFiGiNYY~s~~v~~~ 356 (389)
++||.+++|+|+.||++++++.++||+||+++|+||..|++.+++++|.++++|+++|++++||||||||+|.+|+..
T Consensus 260 ~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~ 337 (503)
T PLN02849 260 GFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNI 337 (503)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccC
Confidence 999999999999999999999999999999999999999999988899999999999999999999999999999853
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-93 Score=717.04 Aligned_cols=302 Identities=42% Similarity=0.774 Sum_probs=284.4
Q ss_pred CCCCCCCeeccccccccccCcccCCCCccceeccccc--CCCccCCCCCCCccCcchhchHHHHHHHHHcCCCeEEeccc
Q 016444 42 SDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSH--IPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSIS 119 (389)
Q Consensus 42 ~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~~--~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~Rfsi~ 119 (389)
.+||++|+||+||||+|+|||+++||||+|+||+|++ .++.+..+..++.||||||||+|||+|||+||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999999 56777778899999999999999999999999999999999
Q ss_pred cCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhCCCce
Q 016444 120 WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVK 199 (389)
Q Consensus 120 Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~ 199 (389)
||||+|+|+.+.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.||+++++|++||++||+||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999999545899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCccccccccccCccCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecCcc
Q 016444 200 YWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMM 279 (389)
Q Consensus 200 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~~~~~~~~~kIG~~~~~~~ 279 (389)
||+||||||+++..||+.|.+||+..+ .+.++||+||+++|||+||+++|++ .++.+|||+++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~-----------~~~~~qa~hh~~lA~A~avk~~~~~---~~~~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD-----------PKAAYQVAHHMLLAHALAVKAIKKI---NPKGKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC-----------HHHHHHHHHHHHHHHHHHHHHHHhh---CCcCceEEEeccCc
Confidence 999999999999999999999998654 3788999999999999999999997 34449999999999
Q ss_pred cccCCCChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhcc--CCCCCHHHHHHhc-CCccEEEecccc-Cceeec
Q 016444 280 YEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQ--LPRFSKEETKYVK-GSLDFIGINHYS-TLYAKD 355 (389)
Q Consensus 280 ~yP~~~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~~d~~~ik-~~~DFiGiNYY~-s~~v~~ 355 (389)
.||.+++|+|+.||++++.+.+++|+||+++|+||.++.+.+++. +|.++++|+++|| +++||||||||+ |.+++.
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999999875 7999999999997 789999999999 555555
Q ss_pred CC
Q 016444 356 CI 357 (389)
Q Consensus 356 ~~ 357 (389)
.+
T Consensus 308 ~~ 309 (460)
T COG2723 308 EP 309 (460)
T ss_pred cC
Confidence 44
No 6
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=6.1e-90 Score=710.84 Aligned_cols=300 Identities=31% Similarity=0.513 Sum_probs=273.1
Q ss_pred CCCCCCCeeccccccccccCcccCCCCccceecccccCCCccC--C----------C--CCCCccCcchhchHHHHHHHH
Q 016444 42 SDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIE--N----------N--DNGDVADDHYHRFLEDIGIMH 107 (389)
Q Consensus 42 ~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~~~~~~~~--~----------~--~~~~~a~d~y~~y~eDi~l~k 107 (389)
.+||++|+||+|||||||||++++||||+|+||+|++.++++. . + .++++||||||||+|||+|||
T Consensus 4 ~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm~ 83 (478)
T PRK09593 4 MPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALFA 83 (478)
T ss_pred ccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHHH
Confidence 4699999999999999999999999999999999988655431 1 1 157899999999999999999
Q ss_pred HcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHH
Q 016444 108 SLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLA 187 (389)
Q Consensus 108 ~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya 187 (389)
+||+++|||||+||||+|+|..|.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||+|+++++.|++||
T Consensus 84 ~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~YA 163 (478)
T PRK09593 84 EMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERLC 163 (478)
T ss_pred HcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHHH
Confidence 99999999999999999998546799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCceEEEEecCCccccccccc-cCc-cCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016444 188 KTCFENFGDRVKYWATLNEPNLLTDMAYI-RGT-YPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQE 265 (389)
Q Consensus 188 ~~~~~~~gd~V~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~~~~~ 265 (389)
++|+++|||+|++|+|||||++++..||. .|. +|||... .++.++++||+++|||+||+++|+.
T Consensus 164 ~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a~h~~llAHa~A~~~~~~~--- 229 (478)
T PRK09593 164 RTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQAAHHELVASAIATKIAHEV--- 229 (478)
T ss_pred HHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHHHHHHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999988886 444 3666421 2568999999999999999999985
Q ss_pred CCCceEEEEecCcccccCCCChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhc--cCCCCCHHHHHHhc-CCccE
Q 016444 266 KQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGS--QLPRFSKEETKYVK-GSLDF 342 (389)
Q Consensus 266 ~~~~kIG~~~~~~~~yP~~~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~--~~p~~t~~d~~~ik-~~~DF 342 (389)
.++++||++++..++||.+++|+|+.||++++ +.++||+||+++|+||+.|++.+++ ..|.||++|+++|| +++||
T Consensus 230 ~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DF 308 (478)
T PRK09593 230 DPENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDF 308 (478)
T ss_pred CCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 57899999999999999999999999999987 4578999999999999999999975 36889999999996 99999
Q ss_pred EEeccccCceeecC
Q 016444 343 IGINHYSTLYAKDC 356 (389)
Q Consensus 343 iGiNYY~s~~v~~~ 356 (389)
||||||+|.+|+..
T Consensus 309 lGiNyYt~~~v~~~ 322 (478)
T PRK09593 309 ISFSYYSSRVASGD 322 (478)
T ss_pred EEEecccCcccccC
Confidence 99999999999854
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=1.2e-89 Score=707.19 Aligned_cols=293 Identities=33% Similarity=0.597 Sum_probs=273.3
Q ss_pred CCCCCCeeccccccccccCcccCCCCccceecccccCCCccCCCCCCCccCcchhchHHHHHHHHHcCCCeEEeccccCc
Q 016444 43 DFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPR 122 (389)
Q Consensus 43 ~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsr 122 (389)
+||++|+||+|||||||||+++++|||+|+||++.+.++. .++++||||||||+|||+|||+||+++|||||+|||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 5999999999999999999999999999999998875543 367899999999999999999999999999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhCCCceEEE
Q 016444 123 ILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWA 202 (389)
Q Consensus 123 i~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~ 202 (389)
|+|+| +|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||++|+++||+ |++|+
T Consensus 79 I~P~g-~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~Wi 155 (467)
T TIGR01233 79 IFPTG-YGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWT 155 (467)
T ss_pred ccCCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 99998 589999999999999999999999999999999999999986 9999999999999999999999998 99999
Q ss_pred EecCCccccccccccCccCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecCccccc
Q 016444 203 TLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYEP 282 (389)
Q Consensus 203 t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~~~~~~~~~kIG~~~~~~~~yP 282 (389)
||||||+++..||..|.+|||.+.. .++.+|++||+++|||+||+++|++ .++++||++++..++||
T Consensus 156 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~---~~~~~IGi~~~~~~~~P 222 (467)
T TIGR01233 156 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDK---GYKGEIGVVHALPTKYP 222 (467)
T ss_pred EecchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEecCceeEE
Confidence 9999999999999999999995321 1468999999999999999999986 57899999999999999
Q ss_pred CC-CChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhc----c--CCCCCHHHHHHh---cCCccEEEeccccCce
Q 016444 283 LR-DEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGS----Q--LPRFSKEETKYV---KGSLDFIGINHYSTLY 352 (389)
Q Consensus 283 ~~-~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~----~--~p~~t~~d~~~i---k~~~DFiGiNYY~s~~ 352 (389)
++ ++|+|+.||++++++.++||+||+++|+||+.|++.++. + .|.+|++|+++| ++++||||||||+|.+
T Consensus 223 ~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~ 302 (467)
T TIGR01233 223 YDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDW 302 (467)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEcccccee
Confidence 97 899999999999999899999999999999999987753 2 377999999999 5899999999999999
Q ss_pred eec
Q 016444 353 AKD 355 (389)
Q Consensus 353 v~~ 355 (389)
|+.
T Consensus 303 v~~ 305 (467)
T TIGR01233 303 MQA 305 (467)
T ss_pred ecc
Confidence 985
No 8
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.3e-89 Score=708.07 Aligned_cols=294 Identities=35% Similarity=0.634 Sum_probs=273.9
Q ss_pred CCCCCCeeccccccccccCcccCCCCccceecccccCCCccCCCCCCCccCcchhchHHHHHHHHHcCCCeEEeccccCc
Q 016444 43 DFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPR 122 (389)
Q Consensus 43 ~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsr 122 (389)
+||++|+||+|||||||||++++||||+|+||++++.++++ ++++||||||||+|||+|||+||+++|||||+|||
T Consensus 4 ~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsR 79 (469)
T PRK13511 4 TLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSR 79 (469)
T ss_pred CCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhh
Confidence 59999999999999999999999999999999998866543 68899999999999999999999999999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhCCCceEEE
Q 016444 123 ILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWA 202 (389)
Q Consensus 123 i~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~ 202 (389)
|+|+| +|.+|++||+||+++||+|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||++|+++||| |++|+
T Consensus 80 I~P~G-~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 80 IFPDG-YGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred cCcCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 99998 589999999999999999999999999999999999999986 9999999999999999999999999 99999
Q ss_pred EecCCccccccccccCccCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecCccccc
Q 016444 203 TLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYEP 282 (389)
Q Consensus 203 t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~~~~~~~~~kIG~~~~~~~~yP 282 (389)
|||||++++..||..|.+|||++.. .+..++++||+++|||+||+++|++ .++++||++++..+++|
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~---~~~g~IGi~~~~~~~~P 223 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDK---GYKGEIGVVHALPTKYP 223 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEecCceEee
Confidence 9999999999999999999996421 1468999999999999999999986 57899999999999999
Q ss_pred CC-CChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhc------cCCCCCHHHHHHhc---CCccEEEeccccCce
Q 016444 283 LR-DEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGS------QLPRFSKEETKYVK---GSLDFIGINHYSTLY 352 (389)
Q Consensus 283 ~~-~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~------~~p~~t~~d~~~ik---~~~DFiGiNYY~s~~ 352 (389)
.+ ++|+|+.||++++++.++||+||+++|+||..|++.+++ ..+.||++|+++|+ +++||||||||+|.+
T Consensus 224 ~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~ 303 (469)
T PRK13511 224 IDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDW 303 (469)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcce
Confidence 98 899999999999999999999999999999999987742 13489999999996 468999999999999
Q ss_pred eecC
Q 016444 353 AKDC 356 (389)
Q Consensus 353 v~~~ 356 (389)
|+..
T Consensus 304 v~~~ 307 (469)
T PRK13511 304 MRAY 307 (469)
T ss_pred eecC
Confidence 9863
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=1.4e-90 Score=713.96 Aligned_cols=303 Identities=50% Similarity=0.924 Sum_probs=279.1
Q ss_pred CCCCCCCeeccccccccccCcccCCCCccceecccccCCCccCCCCCCCccCcchhchHHHHHHHHHcCCCeEEeccccC
Q 016444 42 SDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWP 121 (389)
Q Consensus 42 ~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~Rfsi~Ws 121 (389)
.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.++++||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 47999999999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhCCCceEE
Q 016444 122 RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYW 201 (389)
Q Consensus 122 ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 201 (389)
||+|+|.+|.+|++|+++|+++|++|+++||+|+|||+|||+|+||++ +|||+|+++++.|++||++|+++|||+|++|
T Consensus 83 Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 161 (455)
T PF00232_consen 83 RIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYW 161 (455)
T ss_dssp HHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEE
T ss_pred heeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 999998669999999999999999999999999999999999999998 6999999999999999999999999999999
Q ss_pred EEecCCccccccccccCccCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecCcccc
Q 016444 202 ATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYE 281 (389)
Q Consensus 202 ~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~~~~~~~~~kIG~~~~~~~~y 281 (389)
+|||||++.+..||+.|.+|||..+ .+..++++||+++||++||+++|++ .++++||++++..+++
T Consensus 162 ~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~---~~~~~IGi~~~~~~~~ 227 (455)
T PF00232_consen 162 ITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEK---YPDGKIGIALNFSPFY 227 (455)
T ss_dssp EEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHH---TCTSEEEEEEEEEEEE
T ss_pred Eeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhc---ccceEEeccccccccC
Confidence 9999999999999999999999554 3788999999999999999999997 4899999999999999
Q ss_pred cCCCChHHH-HHHHHHHHHhccccccccccCCCChHHHHHhhcc--CCCCCHHHHHHhcCCccEEEeccccCceeecCCC
Q 016444 282 PLRDEDSDR-QAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQ--LPRFSKEETKYVKGSLDFIGINHYSTLYAKDCIH 358 (389)
Q Consensus 282 P~~~~p~D~-~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~~d~~~ik~~~DFiGiNYY~s~~v~~~~~ 358 (389)
|.+++++|+ .||++.+++.++||+||+++|+||..++..++++ +|.||++|++.|++++||||||||+|.+|+..+.
T Consensus 228 P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~ 307 (455)
T PF00232_consen 228 PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPN 307 (455)
T ss_dssp ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSS
T ss_pred CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcc
Confidence 999998777 8889999999999999999999999999999987 9999999999999999999999999999998764
Q ss_pred C
Q 016444 359 S 359 (389)
Q Consensus 359 ~ 359 (389)
+
T Consensus 308 ~ 308 (455)
T PF00232_consen 308 P 308 (455)
T ss_dssp S
T ss_pred c
Confidence 3
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.7e-89 Score=707.14 Aligned_cols=298 Identities=32% Similarity=0.577 Sum_probs=268.2
Q ss_pred CCCCCCeeccccccccccCcccCCCCccceecccc---c-CCCccC----CCC--CCCccCcchhchHHHHHHHHHcCCC
Q 016444 43 DFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFS---H-IPGNIE----NND--NGDVADDHYHRFLEDIGIMHSLGVN 112 (389)
Q Consensus 43 ~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~---~-~~~~~~----~~~--~~~~a~d~y~~y~eDi~l~k~lG~~ 112 (389)
+||++|+||+|||||||||++++||||+|+||+++ + .++++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 3 244432 222 5788999999999999999999999
Q ss_pred eEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHH
Q 016444 113 SYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFE 192 (389)
Q Consensus 113 ~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~ 192 (389)
+|||||+||||+|+|..|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||++|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 99999999999999854569999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceEEEEecCCcccccc-----ccc-cCc-cCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016444 193 NFGDRVKYWATLNEPNLLTDM-----AYI-RGT-YPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQE 265 (389)
Q Consensus 193 ~~gd~V~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~~~~~ 265 (389)
+|||+|++|+|||||++++.. ||. .|. +|||.. .....+++.||+++|||+||+++|++
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~-----------~~~~~~~~~h~~llAha~A~~~~~~~--- 228 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED-----------REQIMYQAAHYELVASALAVKTGHEI--- 228 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 999999999999999998766 444 343 355531 12457999999999999999999986
Q ss_pred CCCceEEEEecCcccccCCCChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhcc--CCCCCHHHHHHh-cCCccE
Q 016444 266 KQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQ--LPRFSKEETKYV-KGSLDF 342 (389)
Q Consensus 266 ~~~~kIG~~~~~~~~yP~~~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~~d~~~i-k~~~DF 342 (389)
.++++||++++..++||.+++|+|+.||++++.+ +.||+||+++|+||..|++.++++ .|.||++|+++| ++++||
T Consensus 229 ~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 229 NPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred CCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 4789999999999999999999999999998854 679999999999999999999864 478999999999 599999
Q ss_pred EEeccccCceeec
Q 016444 343 IGINHYSTLYAKD 355 (389)
Q Consensus 343 iGiNYY~s~~v~~ 355 (389)
||||||+|.+|+.
T Consensus 308 lGiNyYts~~v~~ 320 (476)
T PRK09589 308 IGFSYYMSFATKF 320 (476)
T ss_pred EEEecccCccccc
Confidence 9999999999975
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=9.1e-89 Score=701.53 Aligned_cols=303 Identities=29% Similarity=0.500 Sum_probs=271.2
Q ss_pred cccCCCCCCCeeccccccccccCcccCCCCccceecccc---c-CCCccC----CC--CCCCccCcchhchHHHHHHHHH
Q 016444 39 VKRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFS---H-IPGNIE----NN--DNGDVADDHYHRFLEDIGIMHS 108 (389)
Q Consensus 39 ~~~~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~---~-~~~~~~----~~--~~~~~a~d~y~~y~eDi~l~k~ 108 (389)
+++.+||++|+||+||||||||||+++||||+|+||+++ + .++++. ++ .++++||||||||+|||+|||+
T Consensus 1 ~~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~e 80 (477)
T PRK15014 1 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAE 80 (477)
T ss_pred CCcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHH
Confidence 355679999999999999999999999999999999998 3 244331 22 2678999999999999999999
Q ss_pred cCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHH
Q 016444 109 LGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAK 188 (389)
Q Consensus 109 lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~ 188 (389)
||+++|||||+|+||+|+|..|.+|++||+||+++|++|+++||+|+|||+|||+|+||.++||||+|+++++.|++||+
T Consensus 81 lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~ 160 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAE 160 (477)
T ss_pred cCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHH
Confidence 99999999999999999985567999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCceEEEEecCCccc-----ccccccc-Ccc-CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 016444 189 TCFENFGDRVKYWATLNEPNLL-----TDMAYIR-GTY-PPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRK 261 (389)
Q Consensus 189 ~~~~~~gd~V~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~ 261 (389)
+||++|||+|++|+||||||+. +..||.. |.+ ||+.. ..+..+|++||+++|||+||+++|+
T Consensus 161 ~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~~~~~~~h~~llAHa~A~~~~~~ 229 (477)
T PRK15014 161 VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEETMYQVLHHQFVASALAVKAARR 229 (477)
T ss_pred HHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 6778874 665 44321 1245899999999999999999998
Q ss_pred hhccCCCceEEEEecCcccccCCCChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhccC--CCCCHHHHHHh-cC
Q 016444 262 HFQEKQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQL--PRFSKEETKYV-KG 338 (389)
Q Consensus 262 ~~~~~~~~kIG~~~~~~~~yP~~~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~--p~~t~~d~~~i-k~ 338 (389)
+ .++++||++++..++||.+++|+|++||++++. ...+|+||+++|+||+.|++.++++. |.++++|+++| ++
T Consensus 230 ~---~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~ 305 (477)
T PRK15014 230 I---NPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREG 305 (477)
T ss_pred h---CCCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcC
Confidence 6 478999999999999999999999999998773 23359999999999999999998753 78999999999 59
Q ss_pred CccEEEeccccCceeecC
Q 016444 339 SLDFIGINHYSTLYAKDC 356 (389)
Q Consensus 339 ~~DFiGiNYY~s~~v~~~ 356 (389)
++||||||||+|.+|+..
T Consensus 306 ~~DFlGiNyYt~~~v~~~ 323 (477)
T PRK15014 306 TCDYLGFSYYMTNAVKAE 323 (477)
T ss_pred CCCEEEEcceeCeeeccC
Confidence 999999999999999853
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=8.8e-88 Score=693.29 Aligned_cols=299 Identities=30% Similarity=0.520 Sum_probs=274.5
Q ss_pred CCCCCCeeccccccccccCcccCCCCccceecccccCCCccC------------CCC--CCCccCcchhchHHHHHHHHH
Q 016444 43 DFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIE------------NND--NGDVADDHYHRFLEDIGIMHS 108 (389)
Q Consensus 43 ~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~~~~~~~~------------~~~--~~~~a~d~y~~y~eDi~l~k~ 108 (389)
+||++|+||+||||||||||+++||||+|+||++++.++++. ++. ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999988666542 222 578899999999999999999
Q ss_pred cCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHH
Q 016444 109 LGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAK 188 (389)
Q Consensus 109 lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~ 188 (389)
||+++|||||+|+||+|+|+.+.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999985467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCceEEEEecCCccccccccc-cCc-cCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccC
Q 016444 189 TCFENFGDRVKYWATLNEPNLLTDMAYI-RGT-YPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEK 266 (389)
Q Consensus 189 ~~~~~~gd~V~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~~~~~~ 266 (389)
+|+++|||+|++|+||||||+++..||. .|. +|||... ....++++||+++|||+||+++|++ .
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~---~ 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEV---N 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHh---C
Confidence 9999999999999999999999999996 564 4786422 2457999999999999999999986 4
Q ss_pred CCceEEEEecCcccccCCCChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhcc--CCCCCHHHHHHhcCCccEEE
Q 016444 267 QGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQ--LPRFSKEETKYVKGSLDFIG 344 (389)
Q Consensus 267 ~~~kIG~~~~~~~~yP~~~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~~d~~~ik~~~DFiG 344 (389)
++++||++++..++||.+++|+|+.||++++ +.++||+||+++|+||+.|++.++++ +|.||++|+++|++++||||
T Consensus 229 ~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlG 307 (474)
T PRK09852 229 PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVS 307 (474)
T ss_pred CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEE
Confidence 7899999999999999999999999999877 45789999999999999999999864 68999999999999999999
Q ss_pred eccccCceeecC
Q 016444 345 INHYSTLYAKDC 356 (389)
Q Consensus 345 iNYY~s~~v~~~ 356 (389)
||||+|.+|+..
T Consensus 308 iNyYt~~~v~~~ 319 (474)
T PRK09852 308 FSYYASRCASAE 319 (474)
T ss_pred EccccCeecccC
Confidence 999999999853
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=5.3e-86 Score=674.32 Aligned_cols=296 Identities=45% Similarity=0.810 Sum_probs=280.4
Q ss_pred CCCCCeeccccccccccCcccCCCCccceecccccCCCccCCCCCCCccCcchhchHHHHHHHHHcCCCeEEeccccCcc
Q 016444 44 FPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRI 123 (389)
Q Consensus 44 fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri 123 (389)
||++|+||+|||||||||+++++|||+|+||++++.++++.++.++++||||||||+|||++||+||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999988777766667889999999999999999999999999999999999
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhCCCceEEEE
Q 016444 124 LPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWAT 203 (389)
Q Consensus 124 ~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t 203 (389)
+|+| +|.+|++++++|+++|++|+++||+|+|||+|||+|+||.++ |||.++++++.|++||+.|+++||++|++|+|
T Consensus 81 ~p~g-~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 158 (427)
T TIGR03356 81 FPEG-TGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWIT 158 (427)
T ss_pred ccCC-CCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEE
Confidence 9998 589999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred ecCCccccccccccCccCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecCcccccC
Q 016444 204 LNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYEPL 283 (389)
Q Consensus 204 ~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~~~~~~~~~kIG~~~~~~~~yP~ 283 (389)
||||++.+..||..|.+||+.++. +..++++||+++|||+||+++|++ .++++||++++..++||.
T Consensus 159 ~NEp~~~~~~~y~~G~~~P~~~~~-----------~~~~~~~hnll~Aha~A~~~~~~~---~~~~~IGi~~~~~~~~P~ 224 (427)
T TIGR03356 159 LNEPWCSAFLGYGLGVHAPGLRDL-----------RAALQAAHHLLLAHGLAVQALRAN---GPGAQVGIVLNLTPVYPA 224 (427)
T ss_pred ecCcceecccchhhccCCCCCccH-----------HHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEEeCCeeeeC
Confidence 999999999999999899985431 457999999999999999999997 478999999999999999
Q ss_pred CCChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhccCCCCCHHHHHHhcCCccEEEeccccCceeecC
Q 016444 284 RDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQLPRFSKEETKYVKGSLDFIGINHYSTLYAKDC 356 (389)
Q Consensus 284 ~~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~~d~~~ik~~~DFiGiNYY~s~~v~~~ 356 (389)
+++|+|+.||++++++.++||+||+++|+||..|++.++. +|.+|++|+++|++++||||||||+|.+|+..
T Consensus 225 ~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 225 SDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAAD 296 (427)
T ss_pred CCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccC
Confidence 9999999999999999999999999999999999999974 69999999999999999999999999999864
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.31 E-value=6e-12 Score=127.05 Aligned_cols=109 Identities=27% Similarity=0.438 Sum_probs=88.0
Q ss_pred hchHHHHHHHHHcCCCeEEe-ccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHh----
Q 016444 97 HRFLEDIGIMHSLGVNSYRF-SISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY---- 171 (389)
Q Consensus 97 ~~y~eDi~l~k~lG~~~~Rf-si~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~---- 171 (389)
..+++|+++||++|+|++|+ .++|++|||++ |.+|+ ..+|++|+.+.++||++++.+.....|.||.++|
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e--G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE--GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT--TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC--Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 46899999999999999996 67999999997 99998 5589999999999999999999999999998653
Q ss_pred -----------CC-----CCChHhHHHHHHHHHHHHHHhCCC--ceEEEEecCCccc
Q 016444 172 -----------GS-----WLSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPNLL 210 (389)
Q Consensus 172 -----------gg-----w~~~~~~~~F~~Ya~~~~~~~gd~--V~~w~t~NEp~~~ 210 (389)
|+ ..+|...+.+.++++.+++||++. |-.|.+.|||...
T Consensus 85 ~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 85 PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp -B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred ccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 22 234667888888899999999984 8899999999754
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.25 E-value=2.6e-11 Score=115.75 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=91.5
Q ss_pred chHHHHHHHHHcCCCeEEeccccCccc-cCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCC
Q 016444 98 RFLEDIGIMHSLGVNSYRFSISWPRIL-PKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLS 176 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~Wsri~-P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~ 176 (389)
..++|++.|+++|+|++|+-|.|..++ |.+ .+.++...++.++++|+.+.++||.++|++|+. |.|.... +++..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~-~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~ 97 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNP-GYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGN 97 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTST-TTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCC-CccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-ccccc
Confidence 579999999999999999999998888 455 457999999999999999999999999999874 7774332 33333
Q ss_pred -hHhHHHHHHHHHHHHHHhCC--CceEEEEecCCcccc
Q 016444 177 -PQMQKEFVHLAKTCFENFGD--RVKYWATLNEPNLLT 211 (389)
Q Consensus 177 -~~~~~~F~~Ya~~~~~~~gd--~V~~w~t~NEp~~~~ 211 (389)
....+.|.++++.++++|++ .|..|.++|||+...
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~ 135 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGN 135 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTT
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccC
Confidence 45688899999999999954 688999999998653
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.74 E-value=3.5e-08 Score=94.69 Aligned_cols=84 Identities=18% Similarity=0.326 Sum_probs=71.6
Q ss_pred cccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCee--EEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhC
Q 016444 118 ISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEP--FVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 118 i~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p--~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~g 195 (389)
+.|++++|.+ |.+|++. .|.+++.++++||++ -+.+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 1 ~kW~~~ep~~--G~~n~~~---~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 1 MKWDSTEPSR--GQFNFSG---ADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CCcccccCCC--CccChHH---HHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhC
Confidence 3699999997 9999854 678999999999995 4456777899998742 2 56788999999999999999
Q ss_pred CCceEEEEecCCccc
Q 016444 196 DRVKYWATLNEPNLL 210 (389)
Q Consensus 196 d~V~~w~t~NEp~~~ 210 (389)
++|..|.++|||...
T Consensus 72 g~i~~wdV~NE~~~~ 86 (254)
T smart00633 72 GKIYAWDVVNEALHD 86 (254)
T ss_pred CcceEEEEeeecccC
Confidence 999999999999853
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=7.3e-07 Score=95.68 Aligned_cols=107 Identities=21% Similarity=0.353 Sum_probs=87.7
Q ss_pred chHHHHHHHHHcCCCeEEec-cccCccccCCCCCCCChhHHHHHHHH-HHHHHHcCCeeEEEe-cccCChhhHHHHh---
Q 016444 98 RFLEDIGIMHSLGVNSYRFS-ISWPRILPKGRFGKVNPAGINFYNYL-IDNLLLRGIEPFVTI-YHHDFPQQLEEKY--- 171 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfs-i~Wsri~P~~~~g~~n~~gl~~Y~~~-id~l~~~GI~p~vtL-~H~d~P~~l~~~~--- 171 (389)
-+++|++.||++|+|++|.+ ++|++++|+. |.+|++ +.|.. ++.+.+.||..++.- .....|.|+..+|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e--G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE--GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc--cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 37889999999999999995 5999999997 999996 66777 999999999999988 7788999998764
Q ss_pred ------------CCCCChHhHH-HHHHHHHH----HHHH-hCC--CceEEEEecCCcc
Q 016444 172 ------------GSWLSPQMQK-EFVHLAKT----CFEN-FGD--RVKYWATLNEPNL 209 (389)
Q Consensus 172 ------------ggw~~~~~~~-~F~~Ya~~----~~~~-~gd--~V~~w~t~NEp~~ 209 (389)
++|.+-+... .|.+|++. +.+| |++ .|--|.+-||=..
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~ 163 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGG 163 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCC
Confidence 6675544332 47777766 7888 777 4899999998554
No 18
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.12 E-value=1e-05 Score=84.71 Aligned_cols=106 Identities=25% Similarity=0.434 Sum_probs=64.6
Q ss_pred hHHHHHHHH-HcCCCeEEec--c--ccCcccc-CCCCCC--CChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHH
Q 016444 99 FLEDIGIMH-SLGVNSYRFS--I--SWPRILP-KGRFGK--VNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEK 170 (389)
Q Consensus 99 y~eDi~l~k-~lG~~~~Rfs--i--~Wsri~P-~~~~g~--~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~ 170 (389)
+.+.+..++ ++||+.+||- + +..-... ++ +|. +|+ ...|+++|.|+++||+|+|.|.. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~-~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDE-DGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEET-TEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhcccccc-CCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 556666665 9999999975 2 3332322 22 232 687 66799999999999999999975 78776432
Q ss_pred ------hCCCC-ChHhHHHHHHHHHHHHHHhCC-----Cce--EEEEecCCccc
Q 016444 171 ------YGSWL-SPQMQKEFVHLAKTCFENFGD-----RVK--YWATLNEPNLL 210 (389)
Q Consensus 171 ------~ggw~-~~~~~~~F~~Ya~~~~~~~gd-----~V~--~w~t~NEp~~~ 210 (389)
+.|+. .|+..+.|.++++.+++|+-+ .|. +|.+||||++.
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 12232 356788888888777666543 355 67899999974
No 19
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.00 E-value=0.00039 Score=69.47 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecc---cCChhhHHHHhCCCCC
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH---HDFPQQLEEKYGSWLS 176 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H---~d~P~~l~~~~ggw~~ 176 (389)
++=+++||+.|+|++|+-+ | +-|.. .|..|. +.-..+..+.+++||+.++++|. |.=|..=... .+|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~-~g~~~~---~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P-~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYD-GGYNDL---EDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKP-AAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TT-TTTTSH---HHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcc-cccCCH---HHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCC-ccCCC
Confidence 4457999999999999977 4 23332 266665 55678999999999999999984 2222110011 57887
Q ss_pred ---hHhHHHHHHHHHHHHHHhCC---CceEEEEecCCccccccccccCccCCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 016444 177 ---PQMQKEFVHLAKTCFENFGD---RVKYWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLL 250 (389)
Q Consensus 177 ---~~~~~~F~~Ya~~~~~~~gd---~V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~ll 250 (389)
.+..+.-.+|.+.+.+.+++ .++.+++=||.+...+ +|.|.. ..+..+-.++.
T Consensus 99 ~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~--------------~~~~~~a~ll~ 157 (332)
T PF07745_consen 99 LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP--------------SNWDNLAKLLN 157 (332)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT--------------T-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc--------------cCHHHHHHHHH
Confidence 56778888888888777644 6899999999875433 444431 22444445666
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEec
Q 016444 251 SHAKAVKLYRKHFQEKQGGSMGIVLH 276 (389)
Q Consensus 251 AHa~Av~~~r~~~~~~~~~kIG~~~~ 276 (389)
|-.+|||. . .|+.+|.+.+.
T Consensus 158 ag~~AVr~---~---~p~~kV~lH~~ 177 (332)
T PF07745_consen 158 AGIKAVRE---V---DPNIKVMLHLA 177 (332)
T ss_dssp HHHHHHHT---H---SSTSEEEEEES
T ss_pred HHHHHHHh---c---CCCCcEEEEEC
Confidence 65555554 4 57888876654
No 20
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=2.7e-05 Score=79.85 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCC-C-CCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHh---CCC
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKG-R-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY---GSW 174 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~-~-~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~---ggw 174 (389)
++|+..||+.|+|++|+-+.|-.+.+.+ . ....+...+.+.+++|+..++.||.+++.||+..-+.--.+.- +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999855554432 1 1223244456899999999999999999999866322222210 112
Q ss_pred C-ChHhHHHHHHHHHHHHHHhCCC--ceEEEEecCCcc
Q 016444 175 L-SPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPNL 209 (389)
Q Consensus 175 ~-~~~~~~~F~~Ya~~~~~~~gd~--V~~w~t~NEp~~ 209 (389)
. ..+.++++.+-.+.++.||++. |--..++|||+-
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3457899999999999999983 666789999985
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.69 E-value=0.00022 Score=70.89 Aligned_cols=125 Identities=20% Similarity=0.278 Sum_probs=86.7
Q ss_pred CCCCCeeccccccccccCcccCCCCccceecccccCCCccCCCCCCCccCcchhchHHHHHHHHHcCCCeEEeccccCcc
Q 016444 44 FPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRI 123 (389)
Q Consensus 44 fp~~FlwG~Atsa~QvEG~~~~dgkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri 123 (389)
.+.+|.+|+|.++.++++.. +|++-+ .+....=+..-.+-|..+
T Consensus 6 ~~~~f~~G~av~~~~~~~~~----------------------------------~~~~~~--~~~Fn~~t~eN~~Kw~~~ 49 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP----------------------------------RYRELF--AKHFNSVTPENEMKWGSI 49 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH----------------------------------HHHHHH--HHH-SEEEESSTTSHHHH
T ss_pred HhccCCEEEEechhHcCCcH----------------------------------HHHHHH--HHhCCeeeeccccchhhh
Confidence 45778999999999888731 011111 122222233335789999
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEE--EecccCChhhHHHHhCCCCChH---hHHHHHHHHHHHHHHhCC--
Q 016444 124 LPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV--TIYHHDFPQQLEEKYGSWLSPQ---MQKEFVHLAKTCFENFGD-- 196 (389)
Q Consensus 124 ~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~v--tL~H~d~P~~l~~~~ggw~~~~---~~~~F~~Ya~~~~~~~gd-- 196 (389)
+|.. |.+|++. .|.+++-++++||++-- .+.|--.|.|+... ..+...+ ......+|.+.+++||++
T Consensus 50 e~~~--g~~~~~~---~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g 123 (320)
T PF00331_consen 50 EPEP--GRFNFES---ADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKG 123 (320)
T ss_dssp ESBT--TBEE-HH---HHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCCC--CccCccc---hhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhcccc
Confidence 9997 9999854 68999999999999873 44466799999863 1233333 788899999999999994
Q ss_pred CceEEEEecCCccc
Q 016444 197 RVKYWATLNEPNLL 210 (389)
Q Consensus 197 ~V~~w~t~NEp~~~ 210 (389)
+|..|=+.|||-.-
T Consensus 124 ~i~~WDVvNE~i~~ 137 (320)
T PF00331_consen 124 RIYAWDVVNEAIDD 137 (320)
T ss_dssp TESEEEEEES-B-T
T ss_pred ceEEEEEeeecccC
Confidence 89999999998654
No 22
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.46 E-value=0.00045 Score=68.69 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=73.2
Q ss_pred chHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec--------ccCChhhHHH
Q 016444 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY--------HHDFPQQLEE 169 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~--------H~d~P~~l~~ 169 (389)
.|++-++.||++|+|++-+-+.|.--+|.+ |.+|++|..=.+.+|+.++++||-+++-.- .-.+|.||..
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~--g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE--GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT--TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC--CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 478889999999999999999999999997 999999988899999999999999776432 1349999987
Q ss_pred HhCCC---CChHhHHHHHHHHHHHHHHhCC-------CceEEEEecCCc
Q 016444 170 KYGSW---LSPQMQKEFVHLAKTCFENFGD-------RVKYWATLNEPN 208 (389)
Q Consensus 170 ~~ggw---~~~~~~~~F~~Ya~~~~~~~gd-------~V~~w~t~NEp~ 208 (389)
+.+.. .++...+.-.+|.+.+++...+ -|...++=||..
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 63332 2345556666666666555433 366677777744
No 23
>PLN03059 beta-galactosidase; Provisional
Probab=96.93 E-value=0.0045 Score=68.23 Aligned_cols=108 Identities=12% Similarity=0.064 Sum_probs=83.9
Q ss_pred hchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec--------ccCChhhHH
Q 016444 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY--------HHDFPQQLE 168 (389)
Q Consensus 97 ~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~--------H~d~P~~l~ 168 (389)
..|++=++.||++|+|++-.=+.|.--||.+ |.+|++|..=..++|+.+.+.||-+++-.- .-.+|.||.
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~--G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~ 136 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP--GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLK 136 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC--CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhh
Confidence 3477779999999999999999999999997 999999999999999999999998777542 347999998
Q ss_pred HHhCCC----CChHhHHHHHHHHHHHHHHhC---------CCceEEEEecCC
Q 016444 169 EKYGSW----LSPQMQKEFVHLAKTCFENFG---------DRVKYWATLNEP 207 (389)
Q Consensus 169 ~~~ggw----~~~~~~~~F~~Ya~~~~~~~g---------d~V~~w~t~NEp 207 (389)
.. .|- .++...++-.+|.+.+++..+ +-|-..++=||=
T Consensus 137 ~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY 187 (840)
T PLN03059 137 YV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY 187 (840)
T ss_pred cC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc
Confidence 54 442 245556666666666666652 235566677774
No 24
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.85 E-value=0.0013 Score=66.87 Aligned_cols=99 Identities=17% Similarity=0.258 Sum_probs=75.8
Q ss_pred hhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------cCC
Q 016444 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H-----------HDF 163 (389)
Q Consensus 96 y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~-H-----------~d~ 163 (389)
++..+..++.+|++|++.+-+.+=|--+|..+ .+++|+ ..|+++++.+++.|++..+.|. | ..+
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~-p~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpL 90 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEG-PQQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPL 90 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSS-TTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCC-CCccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcC
Confidence 44789999999999999999999999999997 599999 4599999999999999888773 3 468
Q ss_pred hhhHHHHh-----------C--------CCCChHhHHHHHHHHHHHHHHhCCCc
Q 016444 164 PQQLEEKY-----------G--------SWLSPQMQKEFVHLAKTCFENFGDRV 198 (389)
Q Consensus 164 P~~l~~~~-----------g--------gw~~~~~~~~F~~Ya~~~~~~~gd~V 198 (389)
|.|+.+.. | -|....+++.|.+|-+...++|.+..
T Consensus 91 P~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~ 144 (402)
T PF01373_consen 91 PSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL 144 (402)
T ss_dssp -HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH
T ss_pred CHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99987531 2 24444458999999998888887653
No 25
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.80 E-value=0.0076 Score=58.96 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=62.9
Q ss_pred chhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhC--
Q 016444 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYG-- 172 (389)
Q Consensus 95 ~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~g-- 172 (389)
-...++.|+++||+||+|++|++- .|. + .++++.|-+.||-++.-+.....-.|-. .+
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~------~-------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~ 93 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPP------S-------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNC 93 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S--------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCT
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccC------c-------HHHHHHHhhcCCEEEEeccccccCcccc--CCcc
Confidence 357899999999999999999943 122 2 2667789999998887664311111110 01
Q ss_pred --CCCChHhHHHHHHHHHHHHHHhCC--CceEEEEecCC
Q 016444 173 --SWLSPQMQKEFVHLAKTCFENFGD--RVKYWATLNEP 207 (389)
Q Consensus 173 --gw~~~~~~~~F~~Ya~~~~~~~gd--~V~~w~t~NEp 207 (389)
--.+++..+.+.+-++.+++++.+ -|-.|.+.||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 94 NYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp SCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 013577888888888889999987 49999999998
No 26
>PLN02161 beta-amylase
Probab=96.72 E-value=0.0056 Score=63.64 Aligned_cols=110 Identities=12% Similarity=0.160 Sum_probs=84.1
Q ss_pred CcchhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-cc----------
Q 016444 93 DDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-HH---------- 161 (389)
Q Consensus 93 ~d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~-H~---------- 161 (389)
.......+..++.+|.+|++.+-+.+=|--+|.++ .+++|+++ |+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~-p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFS-PLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCC-CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 56777789999999999999999999999999988 69999955 99999999999999888775 42
Q ss_pred -CChhhHHHH--------h---CCC----------------CChHhHHHHHHHHHHHHHHhCCCceEEEEecCCc
Q 016444 162 -DFPQQLEEK--------Y---GSW----------------LSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPN 208 (389)
Q Consensus 162 -d~P~~l~~~--------~---ggw----------------~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~ 208 (389)
.+|.|+.+. | .|. ..+.-++.|.+|-+-..++|.+... -|+.|..
T Consensus 189 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~ 261 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEIS 261 (531)
T ss_pred ccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 599998752 0 221 2223457788888887777766543 2444443
No 27
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.71 E-value=0.011 Score=59.90 Aligned_cols=101 Identities=20% Similarity=0.363 Sum_probs=56.5
Q ss_pred HHcCCCeEEecc---c------------cCccc--cCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHH
Q 016444 107 HSLGVNSYRFSI---S------------WPRIL--PKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEE 169 (389)
Q Consensus 107 k~lG~~~~Rfsi---~------------Wsri~--P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~ 169 (389)
+.+|++.+|+.| + |.|.+ +.. +|.+|+.+=+-=+.++++++++|++.++ ++-+..|.|+..
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~-dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~ 134 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPA-DGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTK 134 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-T-TS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCC-CCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhc
Confidence 358999999877 3 33432 222 5777775544456689999999999877 556788888765
Q ss_pred Hh---CC-----CCChHhHHHHHHHHHHHHHHhCC---CceEEEEecCCcc
Q 016444 170 KY---GS-----WLSPQMQKEFVHLAKTCFENFGD---RVKYWATLNEPNL 209 (389)
Q Consensus 170 ~~---gg-----w~~~~~~~~F~~Ya~~~~~~~gd---~V~~w~t~NEp~~ 209 (389)
.. |+ =+.++..+.|++|...|+++|.. .++|-.++|||+.
T Consensus 135 NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 135 NGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 31 11 14567899999999999999833 6899999999983
No 28
>PLN02803 beta-amylase
Probab=96.70 E-value=0.0049 Score=64.38 Aligned_cols=101 Identities=19% Similarity=0.249 Sum_probs=78.3
Q ss_pred cchhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------c
Q 016444 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H-----------H 161 (389)
Q Consensus 94 d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~-H-----------~ 161 (389)
..-...+..++.+|++|++.+-+.+=|--+|.++ .+++|++| |+++++.+++.|++..+.|. | .
T Consensus 104 ~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~-p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~I 179 (548)
T PLN02803 104 NKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDG-PMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSI 179 (548)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCC-CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3345578899999999999999999999999998 69999955 99999999999999888775 3 2
Q ss_pred CChhhHHHH--------h---CCC----------------CChHhHHHHHHHHHHHHHHhCCCc
Q 016444 162 DFPQQLEEK--------Y---GSW----------------LSPQMQKEFVHLAKTCFENFGDRV 198 (389)
Q Consensus 162 d~P~~l~~~--------~---ggw----------------~~~~~~~~F~~Ya~~~~~~~gd~V 198 (389)
.+|.|+.+. | .|- ..+.-++.|.+|-+-.-++|.+..
T Consensus 180 pLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 243 (548)
T PLN02803 180 PLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYL 243 (548)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 599998753 1 121 223345778888877777776644
No 29
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.51 E-value=0.022 Score=55.85 Aligned_cols=104 Identities=15% Similarity=0.254 Sum_probs=63.7
Q ss_pred hHHHHHHHHHcCCCeEEecc--ccCcc--------cc--CCCC-----CCCChhHHHHHHHHHHHHHHcCCeeEEEeccc
Q 016444 99 FLEDIGIMHSLGVNSYRFSI--SWPRI--------LP--KGRF-----GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi--~Wsri--------~P--~~~~-----g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~ 161 (389)
.+.-++..|+-|||.+|+.+ .|... .| ..+. ..+|++=.++.+++|+.|.++||++.+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 34447888999999999998 44433 11 1101 1378888999999999999999999886664
Q ss_pred CChhhHHHHhCCCCC---hHhHHHHHHHHHHHHHHhCCC-ceEEEEecCC
Q 016444 162 DFPQQLEEKYGSWLS---PQMQKEFVHLAKTCFENFGDR-VKYWATLNEP 207 (389)
Q Consensus 162 d~P~~l~~~~ggw~~---~~~~~~F~~Ya~~~~~~~gd~-V~~w~t~NEp 207 (389)
+.|. .+ +.|-. .-..+.-.+|.+.|++||+.. =..|++=||-
T Consensus 111 g~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCcc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 2221 11 44532 224677788999999999997 4779999885
No 30
>PLN00197 beta-amylase; Provisional
Probab=96.49 E-value=0.011 Score=62.00 Aligned_cols=100 Identities=17% Similarity=0.268 Sum_probs=78.3
Q ss_pred chhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------cC
Q 016444 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H-----------HD 162 (389)
Q Consensus 95 ~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~-H-----------~d 162 (389)
.-...+..++.+|++|++.+-+.+=|--+|.++ .+++|++| |+++++.+++.|++..+.|. | ..
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~-p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERES-PGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC-CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 344588999999999999999999999999988 69999955 99999999999999888775 3 26
Q ss_pred ChhhHHHH--------h---CCCC----------------ChHhHHHHHHHHHHHHHHhCCCc
Q 016444 163 FPQQLEEK--------Y---GSWL----------------SPQMQKEFVHLAKTCFENFGDRV 198 (389)
Q Consensus 163 ~P~~l~~~--------~---ggw~----------------~~~~~~~F~~Ya~~~~~~~gd~V 198 (389)
+|.|+.+. | .|.. .+.-++.|.+|.+-.-++|.+..
T Consensus 201 LP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l 263 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLL 263 (573)
T ss_pred CCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99998753 0 1211 12236788888887777776643
No 31
>PLN02801 beta-amylase
Probab=96.31 E-value=0.023 Score=59.17 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=79.2
Q ss_pred cchhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------c
Q 016444 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H-----------H 161 (389)
Q Consensus 94 d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~-H-----------~ 161 (389)
..-...+..++.+|++|++.+-+.+=|--+|.++ .+++|++| |+++++.+++.|++..+.|. | .
T Consensus 34 ~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~-P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~I 109 (517)
T PLN02801 34 EDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKG-PKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNI 109 (517)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC-CCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3445588899999999999999999999999987 69999955 99999999999999877765 3 3
Q ss_pred CChhhHHHH--------h---CCC----------------CChHhHHHHHHHHHHHHHHhCCCc
Q 016444 162 DFPQQLEEK--------Y---GSW----------------LSPQMQKEFVHLAKTCFENFGDRV 198 (389)
Q Consensus 162 d~P~~l~~~--------~---ggw----------------~~~~~~~~F~~Ya~~~~~~~gd~V 198 (389)
.+|.|+.+. | .|- ..+.-++.+.+|-+-..++|.+..
T Consensus 110 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 110 PIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred cCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 699998753 0 121 223346888888888877776643
No 32
>PLN02905 beta-amylase
Probab=96.29 E-value=0.02 Score=60.87 Aligned_cols=101 Identities=14% Similarity=0.203 Sum_probs=78.7
Q ss_pred CcchhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------
Q 016444 93 DDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H----------- 160 (389)
Q Consensus 93 ~d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~-H----------- 160 (389)
.......+..++.+|.+|++.+-+.+=|--+|.++ .+++|++| |+++++.+++.|++..+.|. |
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~g-P~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 357 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHA-PQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGGNVGDDVC 357 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCC-CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccc
Confidence 45677789999999999999999999999999988 69999955 99999999999999888775 3
Q ss_pred cCChhhHHHH--------h---CCCC----------------ChHhHHHHHHHHHHHHHHhCCC
Q 016444 161 HDFPQQLEEK--------Y---GSWL----------------SPQMQKEFVHLAKTCFENFGDR 197 (389)
Q Consensus 161 ~d~P~~l~~~--------~---ggw~----------------~~~~~~~F~~Ya~~~~~~~gd~ 197 (389)
..+|.|+.+. | .|.. .+.-++.|.+|.+-+-++|.+.
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2699998753 1 1211 2334577777777766666553
No 33
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.29 E-value=0.27 Score=48.31 Aligned_cols=137 Identities=22% Similarity=0.302 Sum_probs=79.1
Q ss_pred CCCCCCCeecccccc-ccccCcccCCCCccceecccccCCCccCCCCCCCccCcchhchHHHHHHHHHcCCCeEEecccc
Q 016444 42 SDFPDGFLFGTATSS-FQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISW 120 (389)
Q Consensus 42 ~~fp~~FlwG~Atsa-~QvEG~~~~dgkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~Rfsi~W 120 (389)
...|+||+-|+-.|. .|+|- .++| |..+ ++. -++-++.+|+.|+|.+|+-| |
T Consensus 33 ~~~~~dFikGaDis~l~~lE~---~Gvk-------f~d~--------ng~--------~qD~~~iLK~~GvNyvRlRv-w 85 (403)
T COG3867 33 ENSPNDFIKGADISSLIELEN---SGVK-------FFDT--------NGV--------RQDALQILKNHGVNYVRLRV-W 85 (403)
T ss_pred cCChHHhhccccHHHHHHHHH---cCce-------EEcc--------CCh--------HHHHHHHHHHcCcCeEEEEE-e
Confidence 368999999987654 56663 1221 1111 111 13447999999999999976 2
Q ss_pred CccccC-CC--CCCCChhHHHHHHHHHHHHHHcCCeeEEEec---ccCChhhHHHHhCCCCCh---HhHHHHHHHHHHHH
Q 016444 121 PRILPK-GR--FGKVNPAGINFYNYLIDNLLLRGIEPFVTIY---HHDFPQQLEEKYGSWLSP---QMQKEFVHLAKTCF 191 (389)
Q Consensus 121 sri~P~-~~--~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~---H~d~P~~l~~~~ggw~~~---~~~~~F~~Ya~~~~ 191 (389)
-.=..+ |. .|.-|. ++.--++-.+.+++||++++..| ||.=|.. +.+-..|.+- ....+--+|.+.+.
T Consensus 86 ndP~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~kPkaW~~l~fe~lk~avy~yTk~~l 162 (403)
T COG3867 86 NDPYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKKPKAWENLNFEQLKKAVYSYTKYVL 162 (403)
T ss_pred cCCccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCCcHHhhhcCHHHHHHHHHHHHHHHH
Confidence 211111 10 112222 34445778889999999999987 3555532 1111357542 23334445555555
Q ss_pred HHh---CCCceEEEEecCCc
Q 016444 192 ENF---GDRVKYWATLNEPN 208 (389)
Q Consensus 192 ~~~---gd~V~~w~t~NEp~ 208 (389)
+.+ |-..+.-++=||-|
T Consensus 163 ~~m~~eGi~pdmVQVGNEtn 182 (403)
T COG3867 163 TTMKKEGILPDMVQVGNETN 182 (403)
T ss_pred HHHHHcCCCccceEeccccC
Confidence 544 44566677889966
No 34
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.21 E-value=0.02 Score=61.65 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=65.8
Q ss_pred hchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHH-------
Q 016444 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEE------- 169 (389)
Q Consensus 97 ~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~------- 169 (389)
..+..|+++||++|+|++|+|- .|.. ..+++.|-+.||-++.-+.-+....|...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~-------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS-------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC-------------HHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 4578999999999999999952 2322 26788999999987765532222222210
Q ss_pred HhCCCC----ChHhHHHHHHHHHHHHHHhCCC--ceEEEEecCCc
Q 016444 170 KYGSWL----SPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPN 208 (389)
Q Consensus 170 ~~ggw~----~~~~~~~F~~Ya~~~~~~~gd~--V~~w~t~NEp~ 208 (389)
....|. +++..+.+.+-++.+++|+.+. |-.|.+-||+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 001232 3567788888899999999885 88999999963
No 35
>PLN02705 beta-amylase
Probab=96.03 E-value=0.028 Score=59.63 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=77.4
Q ss_pred cchhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------c
Q 016444 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H-----------H 161 (389)
Q Consensus 94 d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~-H-----------~ 161 (389)
..-...+..++.+|++|++.+-+.+=|--+|.++ .+++|++| |+++++.+++.|++..+.|. | .
T Consensus 265 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~-P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 340 (681)
T PLN02705 265 VDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWN-PQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGGNASGNVMI 340 (681)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCC-CCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccc
Confidence 4456688999999999999999999999999987 69999955 99999999999999877775 3 2
Q ss_pred CChhhHHHH--------h---CCCC----------------ChHhHHHHHHHHHHHHHHhCCC
Q 016444 162 DFPQQLEEK--------Y---GSWL----------------SPQMQKEFVHLAKTCFENFGDR 197 (389)
Q Consensus 162 d~P~~l~~~--------~---ggw~----------------~~~~~~~F~~Ya~~~~~~~gd~ 197 (389)
.+|.|+.+. | .|.. .+.-++.|.+|.+-+-++|.+.
T Consensus 341 PLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred cCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 699998753 0 1211 2233577778877776666553
No 36
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.02 E-value=0.022 Score=56.33 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=73.5
Q ss_pred HcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEE-E-ecccCChhhHHHHhCCCCChHhHHHHHH
Q 016444 108 SLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV-T-IYHHDFPQQLEEKYGSWLSPQMQKEFVH 185 (389)
Q Consensus 108 ~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~v-t-L~H~d~P~~l~~~~ggw~~~~~~~~F~~ 185 (389)
+.+.=+--=-+-|.-|+|.. |.+|+++- |.+.+-++++||..=- | +.|--.|.|+.. .-+..+...+...+
T Consensus 57 e~n~iTpenemKwe~i~p~~--G~f~Fe~A---D~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~ 129 (345)
T COG3693 57 ECNQITPENEMKWEAIEPER--GRFNFEAA---DAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEE 129 (345)
T ss_pred hhcccccccccccccccCCC--CccCccch---HHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHH
Confidence 33333333446799999975 99999774 7889999999997432 2 234468889864 23677889999999
Q ss_pred HHHHHHHHhCCCceEEEEecCCcc
Q 016444 186 LAKTCFENFGDRVKYWATLNEPNL 209 (389)
Q Consensus 186 Ya~~~~~~~gd~V~~w~t~NEp~~ 209 (389)
+..+|+.||.++|..|=+.|||--
T Consensus 130 hI~tV~~rYkg~~~sWDVVNE~vd 153 (345)
T COG3693 130 HIKTVVGRYKGSVASWDVVNEAVD 153 (345)
T ss_pred HHHHHHHhccCceeEEEecccccC
Confidence 999999999999999999999865
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.04 E-value=0.19 Score=45.47 Aligned_cols=103 Identities=16% Similarity=0.321 Sum_probs=66.6
Q ss_pred hchHHHHHHHHHcCCCeEEeccccCccc-----cCCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHH
Q 016444 97 HRFLEDIGIMHSLGVNSYRFSISWPRIL-----PKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEK 170 (389)
Q Consensus 97 ~~y~eDi~l~k~lG~~~~Rfsi~Wsri~-----P~~~-~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~ 170 (389)
.+|+++++.|+++|++.+=+. |+... |..- .+.+.....+..+.+++++.+.||++++.|+. -|.|..+
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc-
Confidence 469999999999999987433 44332 2210 01122244578999999999999999999974 4555552
Q ss_pred hCCCCChH-hHHHHHHHHHHHHHHhCCC--ceEEEEecCCc
Q 016444 171 YGSWLSPQ-MQKEFVHLAKTCFENFGDR--VKYWATLNEPN 208 (389)
Q Consensus 171 ~ggw~~~~-~~~~F~~Ya~~~~~~~gd~--V~~w~t~NEp~ 208 (389)
.+.+ -++.=..-++.+.++||.. +.-|-+=.|+.
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1211 2233334567788889884 56666666654
No 38
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.29 E-value=0.2 Score=57.49 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=64.2
Q ss_pred chhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec---ccCChhhHHHHh
Q 016444 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY---HHDFPQQLEEKY 171 (389)
Q Consensus 95 ~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~---H~d~P~~l~~~~ 171 (389)
...++++||++||++|+|++|+| -.|.. .++.+.|-+.||=++--.. |.-.|. .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-------------p~fydlcDe~GilV~dE~~~e~hg~~~~---~-- 425 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-------------PLWYELCDRYGLYVVDEANIETHGMVPM---N-- 425 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------------HHHHHHHHHcCCEEEEecCccccCCccc---c--
Confidence 45678999999999999999996 23332 2556888899997776542 111110 0
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhCCC--ceEEEEecCCc
Q 016444 172 GSWLSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPN 208 (389)
Q Consensus 172 ggw~~~~~~~~F~~Ya~~~~~~~gd~--V~~w~t~NEp~ 208 (389)
....+++..+.+.+=++.+++|.++. |-.|..-||+.
T Consensus 426 ~~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 426 RLSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 01124666777777788899999885 89999999975
No 39
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.98 E-value=0.42 Score=51.38 Aligned_cols=108 Identities=16% Similarity=0.124 Sum_probs=84.5
Q ss_pred chHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe--------cccCChhhHHH
Q 016444 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI--------YHHDFPQQLEE 169 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL--------~H~d~P~~l~~ 169 (389)
.|++=|+.+|++|+|++-.=+-|.-.+|.+ |++|++|.-=..++|..+.+.|+=+++-+ .+-.+|.||..
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~--g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP--GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC--CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 477779999999999999999999999997 99999997777788999999998655543 25678988876
Q ss_pred HhCCC----CChHhHHHHHHHHHHHHHHh-------CCCceEEEEecCCc
Q 016444 170 KYGSW----LSPQMQKEFVHLAKTCFENF-------GDRVKYWATLNEPN 208 (389)
Q Consensus 170 ~~ggw----~~~~~~~~F~~Ya~~~~~~~-------gd~V~~w~t~NEp~ 208 (389)
. .|- .|+.+..+..+|.+.++... |.=|-.-++=||=.
T Consensus 128 ~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 128 V-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred C-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 5 442 46778888888888887743 33366667777754
No 40
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.60 E-value=0.35 Score=55.47 Aligned_cols=91 Identities=20% Similarity=0.220 Sum_probs=63.7
Q ss_pred chhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec---c-cCChhhHHHH
Q 016444 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY---H-HDFPQQLEEK 170 (389)
Q Consensus 95 ~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~---H-~d~P~~l~~~ 170 (389)
....+++||++||++|+|++|+| ..|.. ..+.+.|-+.||=++--.. | |.... .
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~s-----HyP~~-------------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~ 410 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTA-----HYPND-------------PRFYELCDIYGLFVMAETDVESHGFANVG----D 410 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------------HHHHHHHHHCCCEEEECCcccccCccccc----c
Confidence 35789999999999999999996 24443 2567889999997766431 1 11100 0
Q ss_pred hCCC--CChHhHHHHHHHHHHHHHHhCCC--ceEEEEecCCc
Q 016444 171 YGSW--LSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPN 208 (389)
Q Consensus 171 ~ggw--~~~~~~~~F~~Ya~~~~~~~gd~--V~~w~t~NEp~ 208 (389)
+ .+ .+++..+.|.+=++.+++|.++. |-.|..-||..
T Consensus 411 ~-~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 411 I-SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred c-ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 0 11 23445567777788899999885 89999999973
No 41
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=91.00 E-value=1.3 Score=49.63 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=66.7
Q ss_pred CcchhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhC
Q 016444 93 DDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYG 172 (389)
Q Consensus 93 ~d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~g 172 (389)
+-.+..+++|+++||++|+|++|.| =.|+. .+..+.|-+.||=++=-.. .+- ++
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-------------~~~ydLcDelGllV~~Ea~-----~~~---~~ 370 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-------------EEFYDLCDELGLLVIDEAM-----IET---HG 370 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-------------HHHHHHHHHhCcEEEEecc-----hhh---cC
Confidence 4456669999999999999999998 34443 3667788889997776443 221 24
Q ss_pred CCCChHhHHHHHHHHHHHHHHhCC--CceEEEEecCCcc
Q 016444 173 SWLSPQMQKEFVHLAKTCFENFGD--RVKYWATLNEPNL 209 (389)
Q Consensus 173 gw~~~~~~~~F~~Ya~~~~~~~gd--~V~~w~t~NEp~~ 209 (389)
+...++..+...+=++..++|-++ .|-.|..=||.+.
T Consensus 371 ~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 371 MPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred CCCCcchhHHHHHHHHHHHHhccCCCcEEEEeccccccC
Confidence 445566666777778888888877 4899999999664
No 42
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=89.30 E-value=0.67 Score=47.36 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=71.9
Q ss_pred HHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCC--ChHhHHHH
Q 016444 106 MHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWL--SPQMQKEF 183 (389)
Q Consensus 106 ~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~--~~~~~~~F 183 (389)
-+|+|++-+|.---|.-++-.. -+++ .++++++|.+...|+.-+.+-.||+.+.-....|.+=. .....+.+
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~~---~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~ 87 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQKL---FYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLI 87 (428)
T ss_pred hhhhceeeehhcceeeeeeccc---cCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHH
Confidence 3588888888888787333322 3455 78999999999999555556667777765444343322 23478999
Q ss_pred HHHHHHHHHHhCCC-c--eEEEEecCCccccc
Q 016444 184 VHLAKTCFENFGDR-V--KYWATLNEPNLLTD 212 (389)
Q Consensus 184 ~~Ya~~~~~~~gd~-V--~~w~t~NEp~~~~~ 212 (389)
+.++.-|+.++|-+ | -....+||||..+.
T Consensus 88 ~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ad 119 (428)
T COG3664 88 AAFLKHVIRRVGVEFVRKWPFYSPNEPNLLAD 119 (428)
T ss_pred HHHHHHHHHHhChhheeecceeecCCCCcccc
Confidence 99999999999974 3 44569999998754
No 43
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=86.01 E-value=7.7 Score=37.95 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=73.1
Q ss_pred cceecccccCCCccCCCCCCCccCcchhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHH
Q 016444 70 LSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLL 149 (389)
Q Consensus 70 ~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~ 149 (389)
.+.|+-|....+. + .+-.+.--+.++++-|+..+++|+..+=+.--|+.-..+..........-....++++-.++
T Consensus 9 k~~W~Ww~~~~~~---~-~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~ 84 (273)
T PF10566_consen 9 KAAWSWWSMHNGK---G-VGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKE 84 (273)
T ss_dssp EEEECTCCCCTTS---S-BSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHH
T ss_pred eEEEeecccCCCC---C-CCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHH
Confidence 4778877653221 1 11234446888999999999999999999999997332221011111111346799999999
Q ss_pred cCCeeEEEecccC------ChhhHHHH---h---C------C---CCChHhHHHHHHHHHHHHHH
Q 016444 150 RGIEPFVTIYHHD------FPQQLEEK---Y---G------S---WLSPQMQKEFVHLAKTCFEN 193 (389)
Q Consensus 150 ~GI~p~vtL~H~d------~P~~l~~~---~---g------g---w~~~~~~~~F~~Ya~~~~~~ 193 (389)
+|+.+++-.+|-+ +=..+.+. | | + -.+.+.++.+.+-++.++++
T Consensus 85 KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 85 KGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp TT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999888755 21112111 1 1 2 24567888888888888776
No 44
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=83.61 E-value=10 Score=37.63 Aligned_cols=87 Identities=18% Similarity=0.313 Sum_probs=62.2
Q ss_pred hhchHHHHHHHHHcCCCeEEecc---ccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhC
Q 016444 96 YHRFLEDIGIMHSLGVNSYRFSI---SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYG 172 (389)
Q Consensus 96 y~~y~eDi~l~k~lG~~~~Rfsi---~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~g 172 (389)
..||.+--+++++.|+|..-+.= .-..| ..+-++.+.++-|.++.+||++.+++. |.-|.-+ |
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~L---------t~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----g 121 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLL---------TPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----G 121 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGG---------STTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----T
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhc---------CHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----C
Confidence 46899999999999999876432 22222 223366778999999999999999997 7888654 5
Q ss_pred C-----CCChHhHHHHHHHHHHHHHHhCC
Q 016444 173 S-----WLSPQMQKEFVHLAKTCFENFGD 196 (389)
Q Consensus 173 g-----w~~~~~~~~F~~Ya~~~~~~~gd 196 (389)
| -++++++..|.+=++.+.++.-|
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 5 36789999999999999998766
No 45
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=82.98 E-value=0.59 Score=48.72 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=79.1
Q ss_pred chHHHHHHHHHcCCCeEEecc-ccCccccCCCCCCCChhH-HHHHHHHHHHHHHcCCeeEEEec----ccCChhhHHHHh
Q 016444 98 RFLEDIGIMHSLGVNSYRFSI-SWPRILPKGRFGKVNPAG-INFYNYLIDNLLLRGIEPFVTIY----HHDFPQQLEEKY 171 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi-~Wsri~P~~~~g~~n~~g-l~~Y~~~id~l~~~GI~p~vtL~----H~d~P~~l~~~~ 171 (389)
..+.|++.++.+|++..|.+| +=..+-.. .|..|.+. +.+.+.+++.+...+|+.++||. |+.-=.|-..=.
T Consensus 27 ei~~dle~a~~vg~k~lR~fiLDgEdc~d~--~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwa 104 (587)
T COG3934 27 EIKADLEPAGFVGVKDLRLFILDGEDCRDK--EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWA 104 (587)
T ss_pred hhhcccccccCccceeEEEEEecCcchhhh--hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecC
Confidence 356789999999999999994 21222222 47788766 89999999999999999999986 322111111000
Q ss_pred CC------CCChHhHHHHHHHHHHHHHHhCCC--ceEEEEecCCcc
Q 016444 172 GS------WLSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPNL 209 (389)
Q Consensus 172 gg------w~~~~~~~~F~~Ya~~~~~~~gd~--V~~w~t~NEp~~ 209 (389)
|+ ...+.+...|.+|++.+++.|+.. +--|+.-|||-+
T Consensus 105 g~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 105 GEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 11 234667888999999999988875 678999999766
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=82.82 E-value=4 Score=36.71 Aligned_cols=65 Identities=18% Similarity=0.361 Sum_probs=45.5
Q ss_pred cchhchHHHHHHHHHcCCCeEEeccccCcccc--CCCCC-------CCCh--hHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILP--KGRFG-------KVNP--AGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 94 d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P--~~~~g-------~~n~--~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
..+....+-++-+++||++++-++--+..... .. .| .+++ -..+=++++|++|+++||++++.+.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~-~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSY-HGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCC-CCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34566777788999999999988765544431 10 01 1221 2345689999999999999999874
No 47
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=81.55 E-value=5 Score=38.45 Aligned_cols=171 Identities=22% Similarity=0.221 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCeeEEEeccc--------------CChhhHHHH----------------hCC----CCChH---hH
Q 016444 138 NFYNYLIDNLLLRGIEPFVTIYHH--------------DFPQQLEEK----------------YGS----WLSPQ---MQ 180 (389)
Q Consensus 138 ~~Y~~~id~l~~~GI~p~vtL~H~--------------d~P~~l~~~----------------~gg----w~~~~---~~ 180 (389)
+.++.+|+.-+++|..+|+||.=. ..|.|-..+ .++ ..+|+ ..
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 678999999999999999999621 112110000 011 11333 01
Q ss_pred HHHHHHHHHHHHHhCCC-----ceEEEEecCCccccccccccCccCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 016444 181 KEFVHLAKTCFENFGDR-----VKYWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKA 255 (389)
Q Consensus 181 ~~F~~Ya~~~~~~~gd~-----V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A 255 (389)
..-.+++..+..+||.. |++|..-|||.+... +|+--+.. ...+.-+....++.|+|
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~------TH~dVHP~------------~~t~~El~~r~i~~Aka 165 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHS------THRDVHPE------------PVTYDELRDRSIEYAKA 165 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHH------HTTTT--S---------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhcc------cccccCCC------------CCCHHHHHHHHHHHHHH
Confidence 12334466677777765 999999999997532 22211111 23355566777777877
Q ss_pred HHHHHHhhccCCCce-EEEEecCcccccCCCChHHHHHHHHHHHHhccccccccccCCCChHHHHHhhccCCCCCHHHHH
Q 016444 256 VKLYRKHFQEKQGGS-MGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGWMLDPLVFGDYPAEMREYLGSQLPRFSKEETK 334 (389)
Q Consensus 256 v~~~r~~~~~~~~~k-IG~~~~~~~~yP~~~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~~d~~ 334 (389)
+|.. .|.++ +|.+...-..|=.... | ++- +-|.-..|.|+ ++.++-++ +.+.+.+
T Consensus 166 iK~~------DP~a~v~GP~~wgw~~y~~~~~--d--~~~---------~~d~~~~g~~~--fl~wyL~q---m~~~~~~ 221 (239)
T PF12891_consen 166 IKAA------DPDAKVFGPVEWGWCGYFSSAD--D--APG---------WPDRAAHGNYD--FLPWYLDQ---MKEAEKS 221 (239)
T ss_dssp HHHH-------TTSEEEEEEE-SHHHHHHTTT--H--HTT---------HHHHHHTTT-S--HHHHHHHH---HHHHHHH
T ss_pred HHhh------CCCCeEeechhhccceeeccCc--c--ccc---------cccccccCCcc--hHHHHHHH---HHHhhhh
Confidence 6543 47775 4555443333322221 1 000 01111345555 22222111 1233333
Q ss_pred HhcCCccEEEeccccC
Q 016444 335 YVKGSLDFIGINHYST 350 (389)
Q Consensus 335 ~ik~~~DFiGiNYY~s 350 (389)
.=+--+|+|-|-||..
T Consensus 222 ~G~RLLDvlDiH~YPq 237 (239)
T PF12891_consen 222 TGKRLLDVLDIHYYPQ 237 (239)
T ss_dssp HTS-S-SEEEEEE--S
T ss_pred cCceeeeeeeeeecCC
Confidence 3345789999999963
No 48
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=77.74 E-value=9 Score=38.13 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=48.8
Q ss_pred hchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCC
Q 016444 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLS 176 (389)
Q Consensus 97 ~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~ 176 (389)
+..+.||.+||+||+|++|+= -|-|.. | .|.....|.+.||=+++.|. .|.--.++..-|..
T Consensus 53 ~~C~rDi~~l~~LgiNtIRVY----~vdp~~-----n------Hd~CM~~~~~aGIYvi~Dl~---~p~~sI~r~~P~~s 114 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRVY----SVDPSK-----N------HDECMSAFADAGIYVILDLN---TPNGSINRSDPAPS 114 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEES-------TTS-------------HHHHHHHHHTT-EEEEES----BTTBS--TTS----
T ss_pred HHHHHhHHHHHHcCCCEEEEE----EeCCCC-----C------HHHHHHHHHhCCCEEEEecC---CCCccccCCCCcCC
Confidence 368999999999999999973 222332 2 47788889999999999995 45222222121111
Q ss_pred hHhHHHHHHHHHHH--HHHhCCCceEEEEecC
Q 016444 177 PQMQKEFVHLAKTC--FENFGDRVKYWATLNE 206 (389)
Q Consensus 177 ~~~~~~F~~Ya~~~--~~~~gd~V~~w~t~NE 206 (389)
- ..+.+.+|...+ |.+|. .|--+..=||
T Consensus 115 w-~~~l~~~~~~vid~fa~Y~-N~LgFf~GNE 144 (314)
T PF03198_consen 115 W-NTDLLDRYFAVIDAFAKYD-NTLGFFAGNE 144 (314)
T ss_dssp ---HHHHHHHHHHHHHHTT-T-TEEEEEEEES
T ss_pred C-CHHHHHHHHHHHHHhccCC-ceEEEEecce
Confidence 1 245566665543 44442 3444555555
No 49
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=76.11 E-value=13 Score=36.93 Aligned_cols=100 Identities=22% Similarity=0.414 Sum_probs=64.9
Q ss_pred hhchHHHHHHHHHcCCCeEEecccc-------CccccCCC--CCCCC-hhHHHHHHHHHHHHHHcCCeeEEEe----c--
Q 016444 96 YHRFLEDIGIMHSLGVNSYRFSISW-------PRILPKGR--FGKVN-PAGINFYNYLIDNLLLRGIEPFVTI----Y-- 159 (389)
Q Consensus 96 y~~y~eDi~l~k~lG~~~~Rfsi~W-------sri~P~~~--~g~~n-~~gl~~Y~~~id~l~~~GI~p~vtL----~-- 159 (389)
-...++-++.++++|+|++=+.+.+ |.++|... .|... ..|.+.+..+|++++++||+...-+ -
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 4557888999999999987655433 33444210 11111 1255778999999999999976543 1
Q ss_pred ---c--cCChhhHHHH-------h----CC--CC---ChHhHHHHHHHHHHHHHHhC
Q 016444 160 ---H--HDFPQQLEEK-------Y----GS--WL---SPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 160 ---H--~d~P~~l~~~-------~----gg--w~---~~~~~~~F~~Ya~~~~~~~g 195 (389)
| -..|.|+..+ + ++ |. +|++.+...+-++.++++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 0 1246664421 1 22 44 47899999999999999995
No 50
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=75.50 E-value=7 Score=37.06 Aligned_cols=59 Identities=24% Similarity=0.447 Sum_probs=41.2
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCC-------CCC--hhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFG-------KVN--PAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g-------~~n--~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
..+-++-+|+||++++-++=-+. .|.+..| .+| .-..+=++++|++|+++||++|+++.
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 45668899999999999885444 2211112 112 23356689999999999999999885
No 51
>PLN02361 alpha-amylase
Probab=74.51 E-value=8.8 Score=39.57 Aligned_cols=65 Identities=12% Similarity=0.238 Sum_probs=46.6
Q ss_pred cchhchHHHHHHHHHcCCCeEEeccccCccccCCCC--C--CCCh--hHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRF--G--KVNP--AGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 94 d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~--g--~~n~--~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
.+|....+-++-+++||++++=++=...-.-+.|-. . .+|. -..+=++++|++|+++||++++.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 488999999999999999999877655433333310 0 1121 123458999999999999999865
No 52
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=70.87 E-value=12 Score=36.57 Aligned_cols=83 Identities=10% Similarity=-0.010 Sum_probs=60.5
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChH
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQ 178 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~ 178 (389)
-+.|++.+++.|++.+++.++=|...-...-+.--++.++...++++.+++.|+++.+++-+|..|. +.
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r~ 144 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------RD 144 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------cC
Confidence 3668999999999999999855544333211233467889999999999999999999998776662 11
Q ss_pred hHHHHHHHHHHHHH
Q 016444 179 MQKEFVHLAKTCFE 192 (389)
Q Consensus 179 ~~~~F~~Ya~~~~~ 192 (389)
..+.+.++++.+.+
T Consensus 145 ~~~~~~~~~~~~~~ 158 (280)
T cd07945 145 SPDYVFQLVDFLSD 158 (280)
T ss_pred CHHHHHHHHHHHHH
Confidence 24566777777654
No 53
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=70.35 E-value=20 Score=31.06 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCeEEeccc----cCccccCCCCCC--CChhHHHHHHHHHHHHHHcCCeeEEEecc
Q 016444 101 EDIGIMHSLGVNSYRFSIS----WPRILPKGRFGK--VNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (389)
Q Consensus 101 eDi~l~k~lG~~~~Rfsi~----Wsri~P~~~~g~--~n~~gl~~Y~~~id~l~~~GI~p~vtL~H 160 (389)
+=++.+|++|+|++-+... |+ -.|.. .|. +..+ -+.+.++|++|+++||++++-+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~a-yYPt~-~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYA-YYPTK-VGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEE-EccCC-CCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 4478899999999998332 11 12332 122 2223 478999999999999999987653
No 54
>PLN00196 alpha-amylase; Provisional
Probab=70.31 E-value=9.5 Score=39.65 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=44.8
Q ss_pred chhchHHHHHHHHHcCCCeEEeccccCccccCCC-C---CCCCh---hHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGR-F---GKVNP---AGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 95 ~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~-~---g~~n~---~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
+|....+.+.-+++||++++=++=.....-+.|- . -.+|. -..+=++++|++++++||++|+.+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4666788899999999999988865544333331 0 01221 123458999999999999999975
No 55
>PRK12313 glycogen branching enzyme; Provisional
Probab=69.85 E-value=19 Score=39.17 Aligned_cols=94 Identities=15% Similarity=0.262 Sum_probs=59.6
Q ss_pred chhchHHH-HHHHHHcCCCeEEeccc--------c-------CccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 95 HYHRFLED-IGIMHSLGVNSYRFSIS--------W-------PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 95 ~y~~y~eD-i~l~k~lG~~~~Rfsi~--------W-------sri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
-|.-..+. ++-+|+||++++=+.=- | -.|.|.- |. .+=++++|++|+++||++|+.+
T Consensus 168 ~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~--Gt-----~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 168 SYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY--GT-----PEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC--CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 35555667 49999999999875432 2 1122221 22 3458999999999999999985
Q ss_pred c--ccCChh----hHH--------H---H-hCC-------CCChHhHHHHHHHHHHHHHHhC
Q 016444 159 Y--HHDFPQ----QLE--------E---K-YGS-------WLSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 159 ~--H~d~P~----~l~--------~---~-~gg-------w~~~~~~~~F~~Ya~~~~~~~g 195 (389)
. |..-.. ++. + . +.. +.++++.+.+.+-++.-+++|+
T Consensus 241 V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 241 VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4 542110 100 0 0 012 3468888888888888888875
No 56
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.23 E-value=1.2e+02 Score=29.74 Aligned_cols=144 Identities=18% Similarity=0.173 Sum_probs=79.9
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCC---hhhH----------HHHhCC-----C---CChHhH
Q 016444 122 RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDF---PQQL----------EEKYGS-----W---LSPQMQ 180 (389)
Q Consensus 122 ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~---P~~l----------~~~~gg-----w---~~~~~~ 180 (389)
+..|.. .|-++.+-+..++++++.++++|-+.++=|.|-.. |... ...... - .=.+++
T Consensus 62 ~~~~~~-~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i 140 (327)
T cd02803 62 KGYPGQ-LGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQII 140 (327)
T ss_pred cCCCCC-cCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHH
Confidence 334443 46788899999999999999999999999998421 1000 000000 0 013578
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEecCCccccccccccCcc-CCC---CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 016444 181 KEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTY-PPT---HCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAV 256 (389)
Q Consensus 181 ~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~~~~gy~~g~~-~Pg---~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av 256 (389)
+.|++-|+.+.+.=-|-|. +-.-.||+...| .|. +.+. . |.+ +-|-..--.+.+
T Consensus 141 ~~~~~aA~~a~~aGfDgve---------ih~~~gyL~~qFlsp~~n~R~d~-----y-Ggs-------~enr~r~~~eii 198 (327)
T cd02803 141 EDFAAAARRAKEAGFDGVE---------IHGAHGYLLSQFLSPYTNKRTDE-----Y-GGS-------LENRARFLLEIV 198 (327)
T ss_pred HHHHHHHHHHHHcCCCEEE---------EcchhhhHHHHhcCccccCCCcc-----c-CCC-------HHHHHHHHHHHH
Confidence 8888888777654222232 334456655432 232 1111 0 111 113333334566
Q ss_pred HHHHHhhccCCCceEEEEecCcccccCCCChHHH
Q 016444 257 KLYRKHFQEKQGGSMGIVLHSMMYEPLRDEDSDR 290 (389)
Q Consensus 257 ~~~r~~~~~~~~~kIG~~~~~~~~yP~~~~p~D~ 290 (389)
+.+|+.. .++..||+-++.....+...++++.
T Consensus 199 ~avr~~~--g~d~~i~vris~~~~~~~g~~~~e~ 230 (327)
T cd02803 199 AAVREAV--GPDFPVGVRLSADDFVPGGLTLEEA 230 (327)
T ss_pred HHHHHHc--CCCceEEEEechhccCCCCCCHHHH
Confidence 7777653 3567899888766555443445553
No 57
>PRK05402 glycogen branching enzyme; Provisional
Probab=68.58 E-value=22 Score=39.53 Aligned_cols=93 Identities=14% Similarity=0.210 Sum_probs=58.5
Q ss_pred hhchHHHH-HHHHHcCCCeEEeccc--------c-------CccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 96 YHRFLEDI-GIMHSLGVNSYRFSIS--------W-------PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 96 y~~y~eDi-~l~k~lG~~~~Rfsi~--------W-------sri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
|.-..+.+ .-+|+||++++=+.=- | -.|.|.= |. .+=++++|++|+++||++|+.+.
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~--Gt-----~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF--GT-----PDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc--CC-----HHHHHHHHHHHHHCCCEEEEEEC
Confidence 44445553 7889999999875532 2 1122221 22 34589999999999999999864
Q ss_pred --ccCC-----------hhhHHH-----HhC-------CCCChHhHHHHHHHHHHHHHHhC
Q 016444 160 --HHDF-----------PQQLEE-----KYG-------SWLSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 160 --H~d~-----------P~~l~~-----~~g-------gw~~~~~~~~F~~Ya~~~~~~~g 195 (389)
|+.. |.+... .+. .+.++++.+.+.+-++.-+++|+
T Consensus 337 ~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 337 PAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 5421 111010 011 23578888888888888888875
No 58
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=68.46 E-value=16 Score=34.51 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEeccc
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~ 161 (389)
+++++.+++.|++.+|++++-+.+.-.-..+.=.+..++...+.++.+++.|+++.+.+...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~ 138 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA 138 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee
Confidence 89999999999999999998763221110011122356778899999999999999998643
No 59
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.89 E-value=29 Score=36.69 Aligned_cols=112 Identities=21% Similarity=0.394 Sum_probs=69.5
Q ss_pred hhchHHHHHHHHHcCCCeEEec----cccCccccCC--------------------------C-CCCCChhH----HHHH
Q 016444 96 YHRFLEDIGIMHSLGVNSYRFS----ISWPRILPKG--------------------------R-FGKVNPAG----INFY 140 (389)
Q Consensus 96 y~~y~eDi~l~k~lG~~~~Rfs----i~Wsri~P~~--------------------------~-~g~~n~~g----l~~Y 140 (389)
|.+|+..|+-|+-+|+|..=-- +-|.+|+-.- . .|.....- +-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 7899999999999999954322 1344443321 0 13333211 2233
Q ss_pred HHHHHHHHHcCCeeEEEecccCChhhHHHHh--------CCCC------------C---hHhHHHHHHHHHHHHHHhCCC
Q 016444 141 NYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY--------GSWL------------S---PQMQKEFVHLAKTCFENFGDR 197 (389)
Q Consensus 141 ~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~--------ggw~------------~---~~~~~~F~~Ya~~~~~~~gd~ 197 (389)
+++||++++-||+|++--+---.|..|..-+ +.|. + |-+++-=..|.+...++||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999888777888886532 2232 2 223333345556678889973
Q ss_pred ceEEE--EecCC
Q 016444 198 VKYWA--TLNEP 207 (389)
Q Consensus 198 V~~w~--t~NEp 207 (389)
-..+. ||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 22222 89985
No 60
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.56 E-value=19 Score=34.51 Aligned_cols=59 Identities=24% Similarity=0.183 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
.+|++.+.+.|++.+|+.++.|.+.-...-+.-.+++++...++++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 78999999999999999998876643211122335778889999999999999887655
No 61
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=66.11 E-value=3.6 Score=32.81 Aligned_cols=19 Identities=42% Similarity=0.775 Sum_probs=13.9
Q ss_pred HHHHhCC--CceEEEEecC-Cc
Q 016444 190 CFENFGD--RVKYWATLNE-PN 208 (389)
Q Consensus 190 ~~~~~gd--~V~~w~t~NE-p~ 208 (389)
++++||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567776 7999999999 66
No 62
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=65.81 E-value=20 Score=35.16 Aligned_cols=87 Identities=9% Similarity=0.085 Sum_probs=61.6
Q ss_pred chHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecc-cCChhhHHHHhCCCCC
Q 016444 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH-HDFPQQLEEKYGSWLS 176 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H-~d~P~~l~~~~ggw~~ 176 (389)
+-.+|++...+.|++.+|+.++=|...-...-+.=.++.++...++|+.++++|+++..++.. |..| +.|..+
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~~ 153 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEVP 153 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCCC
Confidence 358999999999999999998665443221113334577888999999999999999887764 4455 234333
Q ss_pred hHhHHHHHHHHHHHHHH
Q 016444 177 PQMQKEFVHLAKTCFEN 193 (389)
Q Consensus 177 ~~~~~~F~~Ya~~~~~~ 193 (389)
.+.+.++++.+.+.
T Consensus 154 ---~~~~~~~~~~~~~~ 167 (287)
T PRK05692 154 ---PEAVADVAERLFAL 167 (287)
T ss_pred ---HHHHHHHHHHHHHc
Confidence 56777777776543
No 63
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=65.36 E-value=18 Score=36.52 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCC--CCCCChhHHHHHHHHHHHHHHcCCeeE-EEecccCChhhHHHHhCCCCC
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGR--FGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWLS 176 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~--~g~~n~~gl~~Y~~~id~l~~~GI~p~-vtL~H~d~P~~l~~~~ggw~~ 176 (389)
+|.++.++++|++ |+||...-+-++-- -|+.. ..+-+.+.|+.+++.|++.+ +.+- +++|.
T Consensus 99 ~e~l~~l~~~G~~--rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg----------- 162 (374)
T PRK05799 99 EEKLKILKSMGVN--RLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN----------- 162 (374)
T ss_pred HHHHHHHHHcCCC--EEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC-----------
Confidence 6789999999999 55554433333210 12221 23556788999999999744 5553 56662
Q ss_pred hHhHHHHHHHHHHHHHHhCCCceEEEEecCCccccc
Q 016444 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTD 212 (389)
Q Consensus 177 ~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~~~ 212 (389)
++.+.|.+-.+.+.+.=-+.|..+...-+|+....
T Consensus 163 -qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~ 197 (374)
T PRK05799 163 -QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFY 197 (374)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHH
Confidence 22445555555554432355666555557775433
No 64
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=64.58 E-value=13 Score=38.91 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=44.4
Q ss_pred cchhchHHHHHHHHHcCCCeEEeccccCcc--------ccCCC--------CCCCCh--hHHHHHHHHHHHHHHcCCeeE
Q 016444 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRI--------LPKGR--------FGKVNP--AGINFYNYLIDNLLLRGIEPF 155 (389)
Q Consensus 94 d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri--------~P~~~--------~g~~n~--~gl~~Y~~~id~l~~~GI~p~ 155 (389)
+.|....+-++-+++||++++=++=...-. -|... .|.+|. -..+=++++|++|+++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 456667788999999999999877643322 11110 012222 134558999999999999999
Q ss_pred EEec
Q 016444 156 VTIY 159 (389)
Q Consensus 156 vtL~ 159 (389)
+.+.
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9764
No 65
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=64.17 E-value=30 Score=37.03 Aligned_cols=93 Identities=15% Similarity=0.351 Sum_probs=58.7
Q ss_pred chhchHHHHHHHHHcCCCeEEecc--------cc-------CccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 95 HYHRFLEDIGIMHSLGVNSYRFSI--------SW-------PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 95 ~y~~y~eDi~l~k~lG~~~~Rfsi--------~W-------sri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
-|.-..+-++-+|+||++++-+.= .| -.+.|. -| ..+=++++|++|+++||++|+.+.
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~--~G-----~~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA--YG-----GPDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc--cC-----CHHHHHHHHHHHHHCCCEEEEEEc
Confidence 355566778999999999987542 12 111111 12 235589999999999999999764
Q ss_pred --ccC---------ChhhHHHH-hCCC------CCh---HhHHHHHHHHHHHHHHhC
Q 016444 160 --HHD---------FPQQLEEK-YGSW------LSP---QMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 160 --H~d---------~P~~l~~~-~ggw------~~~---~~~~~F~~Ya~~~~~~~g 195 (389)
|.. -| |+... ..+| .++ ++.+.+.+-++.-+++|+
T Consensus 182 ~NH~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 182 YNHFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred cCCCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 432 12 22211 1233 345 777777777777777764
No 66
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=64.04 E-value=14 Score=39.52 Aligned_cols=64 Identities=16% Similarity=0.295 Sum_probs=42.4
Q ss_pred cchhchHHHHHHHHHcCCCeEEeccccCccccCCCCC-------CCCh--hHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFG-------KVNP--AGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 94 d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g-------~~n~--~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
.-+.-..+-++-+++||++++=++=-...- ....| .+|+ -..+=++++|++++++||++|+.+.
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~--~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSP--QKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCC--CCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 345556778899999999998765432211 10001 1111 2345689999999999999999764
No 67
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=63.77 E-value=1.6e+02 Score=29.24 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=32.3
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEeccc
Q 016444 122 RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (389)
Q Consensus 122 ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~ 161 (389)
+..|.. .+-.+.+-+..++++.+.++++|-+.++=|+|-
T Consensus 62 ~~~~~~-~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 62 RITPGD-LGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred CCCCCc-eeecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 444443 356678889999999999999999999999994
No 68
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=62.77 E-value=36 Score=33.55 Aligned_cols=85 Identities=12% Similarity=0.024 Sum_probs=51.5
Q ss_pred HHHHHcCCCeEEeccc--cCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHH
Q 016444 104 GIMHSLGVNSYRFSIS--WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQK 181 (389)
Q Consensus 104 ~l~k~lG~~~~Rfsi~--Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~ 181 (389)
+.+++.|++++-++.- -....|.- .|.............|..|+++|++++|.+=.+.-... -.+...++
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w-~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~ 90 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAW-GGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSAD 90 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccC-CCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHH
Confidence 5677899998887653 22222221 12111011234567899999999999998843222110 01345788
Q ss_pred HHHHHHHHHHHHhCC
Q 016444 182 EFVHLAKTCFENFGD 196 (389)
Q Consensus 182 ~F~~Ya~~~~~~~gd 196 (389)
.|++....+.++|+=
T Consensus 91 ~~~~a~~~~i~~y~~ 105 (294)
T cd06543 91 QLAAAYQKVIDAYGL 105 (294)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888888888864
No 69
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=62.44 E-value=24 Score=35.72 Aligned_cols=85 Identities=11% Similarity=0.005 Sum_probs=60.4
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecc-cCChhhHHHHhCCCCCh
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH-HDFPQQLEEKYGSWLSP 177 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H-~d~P~~l~~~~ggw~~~ 177 (389)
=.+|++.+.+.|++.+++.++=|...-...-+.--++.++.+.++|+.++++|+++.+++.. |..|. .|-.+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~~- 195 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPVP- 195 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCCC-
Confidence 58999999999999999998666554442113334688999999999999999999877753 44441 23222
Q ss_pred HhHHHHHHHHHHHHH
Q 016444 178 QMQKEFVHLAKTCFE 192 (389)
Q Consensus 178 ~~~~~F~~Ya~~~~~ 192 (389)
++.+.++++.+.+
T Consensus 196 --~~~l~~~~~~~~~ 208 (347)
T PLN02746 196 --PSKVAYVAKELYD 208 (347)
T ss_pred --HHHHHHHHHHHHH
Confidence 5556666666544
No 70
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=62.11 E-value=28 Score=37.77 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=57.6
Q ss_pred hhchHHH-----HHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCCh----hh
Q 016444 96 YHRFLED-----IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP----QQ 166 (389)
Q Consensus 96 y~~y~eD-----i~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P----~~ 166 (389)
|.+|.+| ++..++.|++.+|+..+.+.+ +-....|+.+++.|....+++.+=+.| ..
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~ 156 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQT 156 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHH
Confidence 6666666 999999999999999655433 334566777777787766555543334 22
Q ss_pred HHHH------h----------CCCCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccc
Q 016444 167 LEEK------Y----------GSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (389)
Q Consensus 167 l~~~------~----------ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~ 210 (389)
+.+. . .|-..|. ...+.++.+-++++ .--..-+-|-..+.
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~---~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA 212 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDMAGLLKPY---AAYELVSRIKKRVD-VPLHLHCHATTGLS 212 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhcC-CeEEEEECCCCchH
Confidence 2110 0 3455554 34455555556663 22334477776654
No 71
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=61.99 E-value=28 Score=36.70 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=45.0
Q ss_pred chhchHHH-----HHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhh
Q 016444 95 HYHRFLED-----IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQ 166 (389)
Q Consensus 95 ~y~~y~eD-----i~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~ 166 (389)
-|..|.+| ++++++.|++.+|..-.. |. ++-....|+.+++.|.+..+++.+=+.|..
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~l------------nd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~ 160 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDAL------------ND--PRNIQQALRAVKKTGKEAQLCIAYTTSPVH 160 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccC------------CC--HHHHHHHHHHHHHcCCEEEEEEEEEeCCcC
Confidence 47788889 999999999999986533 21 344568888899999998888888666644
No 72
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=61.61 E-value=28 Score=36.63 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=42.4
Q ss_pred chhchHHH-----HHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCCh
Q 016444 95 HYHRFLED-----IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (389)
Q Consensus 95 ~y~~y~eD-----i~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P 164 (389)
.|..|.+| ++...+.|++.+|+.++-+.+ +-....++.+++.|++...++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 36678888 899999999999999866542 334677788888888888777654445
No 73
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=61.24 E-value=14 Score=35.66 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
.+|++.+.+.|++.+|+.++=|...-....+.=-++.++...+++..++++|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 679999999999999998865543322111222357789999999999999999999884
No 74
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=60.87 E-value=61 Score=31.73 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=65.9
Q ss_pred hHHHHHHHHHcC--CCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEeccc---CChhhHHHH---
Q 016444 99 FLEDIGIMHSLG--VNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQLEEK--- 170 (389)
Q Consensus 99 y~eDi~l~k~lG--~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~---d~P~~l~~~--- 170 (389)
.++-++.+++.| ++++=+.+.|.+-.-.+ +=.+|++..--.+.+|++|+++|+++++.+.-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~-~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g 104 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWC-DFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKG 104 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcce-eeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCC
Confidence 567788999999 55677888887532211 113343333335799999999999988876522 233221110
Q ss_pred ----------h--------CC---CCChHhHHHHHHHHHHHHHHhCCCce-EEEEecCC
Q 016444 171 ----------Y--------GS---WLSPQMQKEFVHLAKTCFENFGDRVK-YWATLNEP 207 (389)
Q Consensus 171 ----------~--------gg---w~~~~~~~~F~~Ya~~~~~~~gd~V~-~w~t~NEp 207 (389)
+ ++ +.||++.+.|.+..+.+.+ .| |+ .|+=+||+
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 105 YLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred eEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 0 11 6788999988887776554 44 44 45558886
No 75
>PRK14705 glycogen branching enzyme; Provisional
Probab=60.50 E-value=50 Score=38.95 Aligned_cols=98 Identities=15% Similarity=0.222 Sum_probs=57.5
Q ss_pred hhchHHH-HHHHHHcCCCeEEecc--------ccCccccCCCCCCCC--hhHHHHHHHHHHHHHHcCCeeEEEec--ccC
Q 016444 96 YHRFLED-IGIMHSLGVNSYRFSI--------SWPRILPKGRFGKVN--PAGINFYNYLIDNLLLRGIEPFVTIY--HHD 162 (389)
Q Consensus 96 y~~y~eD-i~l~k~lG~~~~Rfsi--------~Wsri~P~~~~g~~n--~~gl~~Y~~~id~l~~~GI~p~vtL~--H~d 162 (389)
|.-..+. |+-+|+||++++=+.= +|- -.|.+. -.++ .-..+=++.+|++|+++||.+|+.+. |+.
T Consensus 764 ~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y-~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~ 841 (1224)
T PRK14705 764 YRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSY-FAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFP 841 (1224)
T ss_pred hHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCcccc-CCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 3333344 6889999999986542 231 111100 0000 11234488999999999999999865 542
Q ss_pred ChhhHHHHh----------------CC-------CCChHhHHHHHHHHHHHHHHhC
Q 016444 163 FPQQLEEKY----------------GS-------WLSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 163 ~P~~l~~~~----------------gg-------w~~~~~~~~F~~Ya~~~~~~~g 195 (389)
.=.|....+ .. +.++++.+.+.+=+..-+++|+
T Consensus 842 ~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 842 KDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111211111 11 3467888888888888888874
No 76
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=59.33 E-value=20 Score=38.55 Aligned_cols=64 Identities=16% Similarity=0.351 Sum_probs=43.3
Q ss_pred cchhchHHHHHHHHHcCCCeEEeccccCccccCCCCC-------CCCh--hHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFG-------KVNP--AGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 94 d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g-------~~n~--~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
.-+.-..+.++-+++||++++=++=-+.. |..+.| .+|+ -..+-++++|++++++||++|+.+.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34566778899999999999977653321 111001 1111 1245689999999999999999765
No 77
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=59.30 E-value=60 Score=35.31 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=59.3
Q ss_pred hhchHHHH-HHHHHcCCCeEEec-cccCcccc-CCC--CC--CCC--hhHHHHHHHHHHHHHHcCCeeEEEec--ccC--
Q 016444 96 YHRFLEDI-GIMHSLGVNSYRFS-ISWPRILP-KGR--FG--KVN--PAGINFYNYLIDNLLLRGIEPFVTIY--HHD-- 162 (389)
Q Consensus 96 y~~y~eDi-~l~k~lG~~~~Rfs-i~Wsri~P-~~~--~g--~~n--~~gl~~Y~~~id~l~~~GI~p~vtL~--H~d-- 162 (389)
|.-..+-+ +-+|+||++++=+. |..+.-.- .|- .+ .++ .-..+=++++|++|+++||++|+.+. |..
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKD 234 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCc
Confidence 44445564 88999999999873 32221000 010 00 011 11134478999999999999999865 432
Q ss_pred ---------ChhhHHH-----HhCC-------CCChHhHHHHHHHHHHHHHHhC
Q 016444 163 ---------FPQQLEE-----KYGS-------WLSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 163 ---------~P~~l~~-----~~gg-------w~~~~~~~~F~~Ya~~~~~~~g 195 (389)
.|.+... .+.. +.++++.+.+.+-++..+++|+
T Consensus 235 ~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 235 DHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1111110 0011 2468888999999999888875
No 78
>PLN02784 alpha-amylase
Probab=59.07 E-value=26 Score=39.55 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=47.0
Q ss_pred cchhchHHHHHHHHHcCCCeEEeccccCccccCCC--CC--CCCh--hHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGR--FG--KVNP--AGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 94 d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~--~g--~~n~--~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
.+|....+.++-+++||++++=++=.-....+.|- .. .+|. -..+=++++|++|+++||++|+.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 47899999999999999999987765444433331 00 1121 123558999999999999999975
No 79
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=58.80 E-value=43 Score=33.75 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHh
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQM 179 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~ 179 (389)
..-|++|.+.|++-+=.|+ +.|++ -+...++.+.++++.+.+.|+++||.+. |.-|.. -||. .+.
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S-~~~ 83 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNIS-LDN 83 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCC-hHH
Confidence 3447888899998776665 33443 2235789999999999999999999995 887765 4553 344
Q ss_pred HHHHHHH
Q 016444 180 QKEFVHL 186 (389)
Q Consensus 180 ~~~F~~Y 186 (389)
++.|.+.
T Consensus 84 l~~f~e~ 90 (360)
T COG3589 84 LSRFQEL 90 (360)
T ss_pred HHHHHHh
Confidence 6666665
No 80
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=58.79 E-value=30 Score=35.08 Aligned_cols=63 Identities=16% Similarity=0.031 Sum_probs=48.3
Q ss_pred chHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecc
Q 016444 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H 160 (389)
-.++|++.+.+.|++.+|+.++-|.+.-...-+.-.++.++...+.+..+++.|+++.+++-.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 358999999999999999988777664331012223467788899999999999999888753
No 81
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.60 E-value=2.1e+02 Score=28.51 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=80.3
Q ss_pred Ccccc---CCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCC---hhhH---------HHH--h-CCCC-------
Q 016444 121 PRILP---KGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDF---PQQL---------EEK--Y-GSWL------- 175 (389)
Q Consensus 121 sri~P---~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~---P~~l---------~~~--~-ggw~------- 175 (389)
.+..| .. .+-++.+-+..++++.+.++++|-+.++=|+|-.- +.+. ... . ..+.
T Consensus 63 ~~~~~~~~~~-~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~ 141 (338)
T cd04733 63 HLEEPGIIGN-VVLESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTE 141 (338)
T ss_pred cccCCCcCCC-cccCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCH
Confidence 45666 32 36778889999999999999999999999999321 1000 000 0 0011
Q ss_pred --ChHhHHHHHHHHHHHHHHhC-CCceEEEEecCCccccccccccCccC-CCC---CCCCCCCCCCCCCCchHHHHHHHH
Q 016444 176 --SPQMQKEFVHLAKTCFENFG-DRVKYWATLNEPNLLTDMAYIRGTYP-PTH---CSAPFGNCSAGNSDTEPLIVLHNM 248 (389)
Q Consensus 176 --~~~~~~~F~~Ya~~~~~~~g-d~V~~w~t~NEp~~~~~~gy~~g~~~-Pg~---~~~~~~~~~~~~~~~~~~~~~hn~ 248 (389)
=.++++.|++=|+.+ ++.| |-| .+-.-.||+...|- |.. .+. - |. .+-|-
T Consensus 142 ~eI~~~i~~~~~aA~ra-~~aGfDgV---------eih~a~gyLl~qFlsp~~N~R~D~-----y-GG-------slenR 198 (338)
T cd04733 142 EEIEDVIDRFAHAARLA-QEAGFDGV---------QIHAAHGYLLSQFLSPLTNKRTDE-----Y-GG-------SLENR 198 (338)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCEE---------EEchhhhhHHHHhcCCcCCCCCcc-----C-CC-------CHHHH
Confidence 123667777655554 3444 222 23345677766542 321 111 0 11 12344
Q ss_pred HHHHHHHHHHHHHhhccCCCceEEEEecCcccccCCCChHHH
Q 016444 249 LLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYEPLRDEDSDR 290 (389)
Q Consensus 249 llAHa~Av~~~r~~~~~~~~~kIG~~~~~~~~yP~~~~p~D~ 290 (389)
+.--.+.++.+|+.. .++..|++-++...+.+...++++.
T Consensus 199 ~rf~~EiI~aIR~av--G~d~~v~vris~~~~~~~g~~~eea 238 (338)
T cd04733 199 ARLLLEIYDAIRAAV--GPGFPVGIKLNSADFQRGGFTEEDA 238 (338)
T ss_pred HHHHHHHHHHHHHHc--CCCCeEEEEEcHHHcCCCCCCHHHH
Confidence 555556677777652 3466899888765544444455543
No 82
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.20 E-value=53 Score=32.25 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=70.2
Q ss_pred hHHHHHHHHHcCC--CeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccC---ChhhHH-----
Q 016444 99 FLEDIGIMHSLGV--NSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD---FPQQLE----- 168 (389)
Q Consensus 99 y~eDi~l~k~lG~--~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d---~P~~l~----- 168 (389)
..+-++.+++.|+ +++=+.+.|..-. + +=.+|.+-.---..++++|+++|+++++.+.=+- .+..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g-~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--G-DFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--C-ccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 4566788888885 5777777886432 2 1234443333357899999999999988765321 122111
Q ss_pred ----HHhC----------C------CCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCc
Q 016444 169 ----EKYG----------S------WLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPN 208 (389)
Q Consensus 169 ----~~~g----------g------w~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~ 208 (389)
++-| | +.||+..+.|.+..+.+....|= --.|+=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 1 67899999999999888877763 35677899997
No 83
>PRK09505 malS alpha-amylase; Reviewed
Probab=56.38 E-value=23 Score=39.10 Aligned_cols=63 Identities=24% Similarity=0.365 Sum_probs=42.3
Q ss_pred hchHHHHHHHHHcCCCeEEeccccCccc-----------cC-CCCC-------CCCh--hHHHHHHHHHHHHHHcCCeeE
Q 016444 97 HRFLEDIGIMHSLGVNSYRFSISWPRIL-----------PK-GRFG-------KVNP--AGINFYNYLIDNLLLRGIEPF 155 (389)
Q Consensus 97 ~~y~eDi~l~k~lG~~~~Rfsi~Wsri~-----------P~-~~~g-------~~n~--~gl~~Y~~~id~l~~~GI~p~ 155 (389)
.-..+=++-+++||++++=++=-...+. |. +..| .+|+ -..+=++++|++++++||++|
T Consensus 230 ~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~Vi 309 (683)
T PRK09505 230 RGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRIL 309 (683)
T ss_pred HHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3356668899999999998875444331 10 0001 1222 235568999999999999999
Q ss_pred EEec
Q 016444 156 VTIY 159 (389)
Q Consensus 156 vtL~ 159 (389)
+.+.
T Consensus 310 lD~V 313 (683)
T PRK09505 310 FDVV 313 (683)
T ss_pred EEEC
Confidence 9764
No 84
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=56.13 E-value=52 Score=33.79 Aligned_cols=51 Identities=14% Similarity=0.305 Sum_probs=40.3
Q ss_pred hchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 97 ~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
..|++||++++++||+.|=+.|- .. ...+. +....+++.+.+.|.+.++.+
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~--d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS--DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC--CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999998886 11 23443 556788899999998888876
No 85
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=56.02 E-value=24 Score=39.45 Aligned_cols=101 Identities=15% Similarity=0.213 Sum_probs=58.0
Q ss_pred chhchHH-HHHHHHHcCCCeEEeccccCccc--cCCC--CC--CCC--hhHHHHHHHHHHHHHHcCCeeEEEecc--cCC
Q 016444 95 HYHRFLE-DIGIMHSLGVNSYRFSISWPRIL--PKGR--FG--KVN--PAGINFYNYLIDNLLLRGIEPFVTIYH--HDF 163 (389)
Q Consensus 95 ~y~~y~e-Di~l~k~lG~~~~Rfsi~Wsri~--P~~~--~g--~~n--~~gl~~Y~~~id~l~~~GI~p~vtL~H--~d~ 163 (389)
.|.-+.+ -+.-+|+||++++-+.=-...-. ..|- .+ .++ .-..+=++++|++|.++||++|+.+.+ ..-
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 4544433 48999999999997653222110 0000 00 000 111244889999999999999998764 210
Q ss_pred -------------hhhHHHHhCC----C-------CChHhHHHHHHHHHHHHHHhC
Q 016444 164 -------------PQQLEEKYGS----W-------LSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 164 -------------P~~l~~~~gg----w-------~~~~~~~~F~~Ya~~~~~~~g 195 (389)
+.|+...-.| | .++++...+.+=++.-+++|+
T Consensus 328 ~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 328 NTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222210011 2 356777888888888888773
No 86
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=54.57 E-value=37 Score=34.36 Aligned_cols=60 Identities=18% Similarity=0.069 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
++|++.+.+.|++.+|+.++-|.+.-...-+.=.++.++...+.|+.++++|+++.+++.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 899999999999999999987754332111222356788899999999999999877653
No 87
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=53.20 E-value=91 Score=30.87 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCC-eEEecc-ccC-cccc-C-CCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCC
Q 016444 100 LEDIGIMHSLGVN-SYRFSI-SWP-RILP-K-GRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSW 174 (389)
Q Consensus 100 ~eDi~l~k~lG~~-~~Rfsi-~Ws-ri~P-~-~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw 174 (389)
+|.+++|+++|++ .+=+++ +-+ ++.- . + .| .+ .+-+.+.++.++++||.+.+.+. +.+|. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in-Kg-~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~ 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSIN-KG-ST---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------L 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC-CC-CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------C
Confidence 7889999999987 355555 211 1221 1 1 12 22 35678999999999999777664 35552 1
Q ss_pred CChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccccccccccCccCC
Q 016444 175 LSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTYPP 222 (389)
Q Consensus 175 ~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~~~~gy~~g~~~P 222 (389)
.-.++++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.+.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 223677778777777765 45778877766677765444466666654
No 88
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=52.97 E-value=46 Score=33.87 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
++|++.+.+.|++.+|++++-|.+.-...-+.--++.++...+.++.+++.|+++.++..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 889999999999999999977765333111233457788899999999999999888753
No 89
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=52.88 E-value=21 Score=38.08 Aligned_cols=60 Identities=15% Similarity=0.297 Sum_probs=40.5
Q ss_pred hhchHHHHHHHHHcCCCeEEeccccCccccCCC--CC-------CCCh--hHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGR--FG-------KVNP--AGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 96 y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~--~g-------~~n~--~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
+.-..+-++-+++||++++=++=- ++.+. .| .+|+ -..+=++++|++++++||++|+.+.
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi----~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPF----FQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCC----cCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 444566789999999999876532 22210 01 1222 2245689999999999999999754
No 90
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=52.63 E-value=40 Score=32.50 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCeEEeccccC-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 100 LEDIGIMHSLGVNSYRFSISWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Ws-ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
+|.++.||++|++.+-++++-+ ++.+.- .+.- .++.+.+.++.++++||.+.+++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i-~~~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNI-ISTH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhc-cCCC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 8999999999999999999822 133332 1222 34667889999999999865543
No 91
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=52.37 E-value=2.6e+02 Score=28.05 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=77.2
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhh----------HHHHhC-----CCCC---hHhHHHHHHHHHHHH
Q 016444 130 GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQ----------LEEKYG-----SWLS---PQMQKEFVHLAKTCF 191 (389)
Q Consensus 130 g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~----------l~~~~g-----gw~~---~~~~~~F~~Ya~~~~ 191 (389)
+..+.+-+..++++.+.++++|-..++=|.|.+.-.. ...... ..+. +++++.|++=|+.+.
T Consensus 73 ~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~ 152 (337)
T PRK13523 73 GIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAK 152 (337)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999999999999543110 000000 0111 257788887666655
Q ss_pred HHhCCCceEEEEecCCccccccccccCcc-CCC---CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 016444 192 ENFGDRVKYWATLNEPNLLTDMAYIRGTY-PPT---HCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQ 267 (389)
Q Consensus 192 ~~~gd~V~~w~t~NEp~~~~~~gy~~g~~-~Pg---~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~~~~~~~ 267 (389)
+-==|-|. +-+-.||+...| -|. +.+. - |. .+-|-+.--.+.++.+|+. .
T Consensus 153 ~aGfDgVe---------ih~ahGyLl~qFlSp~~N~RtD~-----y-GG-------slenR~Rf~~eii~~ir~~---~- 206 (337)
T PRK13523 153 EAGFDVIE---------IHGAHGYLINEFLSPLSNKRTDE-----Y-GG-------SPENRYRFLREIIDAVKEV---W- 206 (337)
T ss_pred HcCCCEEE---------EccccchHHHHhcCCccCCcCCC-----C-CC-------CHHHHHHHHHHHHHHHHHh---c-
Confidence 53112232 334567776543 332 1111 0 11 1334455555667777765 2
Q ss_pred CceEEEEecCcccccCCCChHHH
Q 016444 268 GGSMGIVLHSMMYEPLRDEDSDR 290 (389)
Q Consensus 268 ~~kIG~~~~~~~~yP~~~~p~D~ 290 (389)
+..||+-++...+.+-..++++.
T Consensus 207 ~~~v~vRis~~d~~~~G~~~~e~ 229 (337)
T PRK13523 207 DGPLFVRISASDYHPGGLTVQDY 229 (337)
T ss_pred CCCeEEEecccccCCCCCCHHHH
Confidence 56788888765544443455554
No 92
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=52.30 E-value=32 Score=38.09 Aligned_cols=57 Identities=26% Similarity=0.397 Sum_probs=40.1
Q ss_pred HHHHHHcCCCeEE----eccccCccccCC-CC--------------CC--CCh---hHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 103 IGIMHSLGVNSYR----FSISWPRILPKG-RF--------------GK--VNP---AGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 103 i~l~k~lG~~~~R----fsi~Wsri~P~~-~~--------------g~--~n~---~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
|+-+|+||++++. +++.+.+-.++. .. |. .+. ..++=+++||++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 9999999999998 345444444321 00 11 122 246779999999999999999976
Q ss_pred c
Q 016444 159 Y 159 (389)
Q Consensus 159 ~ 159 (389)
.
T Consensus 286 V 286 (697)
T COG1523 286 V 286 (697)
T ss_pred e
Confidence 4
No 93
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.79 E-value=61 Score=32.71 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=43.3
Q ss_pred HHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 103 IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 103 i~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
++.++++|.+++-+-+-|. |+. +..+|.+-+++..++.++|++.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~-~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDE-DDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCc-chHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5678999999999999886 442 234578888999999999999999988854
No 94
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=51.22 E-value=1.3e+02 Score=30.55 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=62.7
Q ss_pred ccCcchhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHH
Q 016444 91 VADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEK 170 (389)
Q Consensus 91 ~a~d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~ 170 (389)
+|.=||+ |+= .....+.|+..+|+. + |.+-.+ +....+++.++++|+-.=+...|-.+.+-+.++
T Consensus 78 VaDiHf~-~rl-a~~~~~~g~~k~RIN---------P--GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~k 142 (361)
T COG0821 78 VADIHFD-YRL-ALEAAECGVDKVRIN---------P--GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEK 142 (361)
T ss_pred EEEeecc-HHH-HHHhhhcCcceEEEC---------C--cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHH
Confidence 3444666 433 334457788888863 3 555332 368899999999999999999999999999999
Q ss_pred hCCCCChHhHHHHHHHHHHHHH
Q 016444 171 YGSWLSPQMQKEFVHLAKTCFE 192 (389)
Q Consensus 171 ~ggw~~~~~~~~F~~Ya~~~~~ 192 (389)
|++-+.+..++--.++++.+-+
T Consensus 143 y~~pt~ealveSAl~~a~~~e~ 164 (361)
T COG0821 143 YGGPTPEALVESALEHAELLEE 164 (361)
T ss_pred hcCCCHHHHHHHHHHHHHHHHH
Confidence 9876655566666666666543
No 95
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=51.00 E-value=71 Score=31.20 Aligned_cols=84 Identities=12% Similarity=0.179 Sum_probs=54.5
Q ss_pred HHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCC----hhhHHHHhCCCCChH
Q 016444 103 IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDF----PQQLEEKYGSWLSPQ 178 (389)
Q Consensus 103 i~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~----P~~l~~~~ggw~~~~ 178 (389)
.+.+++.+-+.=.++..|-+|-|+|. +... ...++++.++++|+++++++..++- +.-+.. --.+++
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g~---~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~ 86 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADGT---LTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPE 86 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCCC---CCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHH
Confidence 56777777777778889999988763 3221 2358999999999999999976541 111110 123456
Q ss_pred hHHHHHHHHHHHHHHhC
Q 016444 179 MQKEFVHLAKTCFENFG 195 (389)
Q Consensus 179 ~~~~F~~Ya~~~~~~~g 195 (389)
..+.|++=+-.++++||
T Consensus 87 ~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 87 ARQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 66666666666666654
No 96
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=50.88 E-value=1.7e+02 Score=29.28 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec--ccCChhhHHHH------h
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY--HHDFPQQLEEK------Y 171 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~--H~d~P~~l~~~------~ 171 (389)
.+|++.+.+.|++.+|+....+.. +--.+.|+.+++.|++..+.+. |.-.|..+.+. +
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~ 155 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESY 155 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhc
Confidence 689999999999999988755433 2246899999999999988773 44445443321 1
Q ss_pred ----------CCCCChHhHHHHHHHHHHHHHHhCC
Q 016444 172 ----------GSWLSPQMQKEFVHLAKTCFENFGD 196 (389)
Q Consensus 172 ----------ggw~~~~~~~~F~~Ya~~~~~~~gd 196 (389)
.|-..|+ ...++++.+-+++++
T Consensus 156 Ga~~i~i~DT~G~~~P~---~v~~~v~~l~~~l~~ 187 (333)
T TIGR03217 156 GADCVYIVDSAGAMLPD---DVRDRVRALKAVLKP 187 (333)
T ss_pred CCCEEEEccCCCCCCHH---HHHHHHHHHHHhCCC
Confidence 2344433 455566666666654
No 97
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=50.28 E-value=1e+02 Score=29.77 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=38.8
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
-++|++...+.|++.+|+++..+. ++.-.+.++.++++|+++.+++.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEE
Confidence 588999999999999999886544 34567889999999999887663
No 98
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=49.81 E-value=1.2e+02 Score=30.40 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCeeEEEecccCCh--------hhHHH--H-----------h--------C---CCCChHhHHHHHHHHH
Q 016444 141 NYLIDNLLLRGIEPFVTIYHHDFP--------QQLEE--K-----------Y--------G---SWLSPQMQKEFVHLAK 188 (389)
Q Consensus 141 ~~~id~l~~~GI~p~vtL~H~d~P--------~~l~~--~-----------~--------g---gw~~~~~~~~F~~Ya~ 188 (389)
+++|++|+++|++.++.+.-+-.+ .+-+. + | + .+.|++.++.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 789999999999999887644222 22111 0 0 1 2678999999888777
Q ss_pred HHHHHhCCCceEEEEecCCcc
Q 016444 189 TCFENFGDRVKYWATLNEPNL 209 (389)
Q Consensus 189 ~~~~~~gd~V~~w~t~NEp~~ 209 (389)
.+...+|- --.|+=+|||..
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHhcCCC-cEEEecCCCCch
Confidence 76666553 356888999864
No 99
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=49.55 E-value=69 Score=33.57 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=60.9
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhh----HH---HH-
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQ----LE---EK- 170 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~----l~---~~- 170 (389)
.++|++.+.+.|++.+|+.++-+.+. -....|+.+++.|+++.+++..-+-|.. +. ++
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~--------------n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l 163 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVR--------------NLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEM 163 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHH--------------HHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 36667999999999999998665441 2456889999999998887776555621 11 11
Q ss_pred --h----------CCCCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccc
Q 016444 171 --Y----------GSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (389)
Q Consensus 171 --~----------ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~ 210 (389)
. .|..+|.. ..+.++.+-++++ ..-.+-+-|-..+.
T Consensus 164 ~~~Gad~I~i~Dt~G~l~P~~---v~~lv~alk~~~~-~pi~~H~Hnt~GlA 211 (448)
T PRK12331 164 QEMGADSICIKDMAGILTPYV---AYELVKRIKEAVT-VPLEVHTHATSGIA 211 (448)
T ss_pred HHcCCCEEEEcCCCCCCCHHH---HHHHHHHHHHhcC-CeEEEEecCCCCcH
Confidence 0 46666653 3455566666665 22344466666653
No 100
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=49.00 E-value=35 Score=38.77 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=42.7
Q ss_pred hhchHHHHHHHHHcCCCeEEecc---------------ccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 96 YHRFLEDIGIMHSLGVNSYRFSI---------------SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 96 y~~y~eDi~l~k~lG~~~~Rfsi---------------~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
+....+-+.-+++||++++=+|= ++.+|-|.- | +.+=+++++++++++||++|+.+.
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l--G-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL--G-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC--C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 45578889999999999986554 334444442 2 235589999999999999999774
No 101
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.90 E-value=1.5e+02 Score=29.23 Aligned_cols=110 Identities=20% Similarity=0.186 Sum_probs=60.2
Q ss_pred hHHHHHHHHHcCCC--eEEeccccCccccCCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEEecccC---ChhhHHHH--
Q 016444 99 FLEDIGIMHSLGVN--SYRFSISWPRILPKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD---FPQQLEEK-- 170 (389)
Q Consensus 99 y~eDi~l~k~lG~~--~~Rfsi~Wsri~P~~~-~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d---~P~~l~~~-- 170 (389)
..+-++.+++.|+. ++=+.+.|....-... .=.+|.+..---++||++|+++|++.++.+.-+- .|..-+.+
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~ 110 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEA 110 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHC
Confidence 34445566666653 4444444543310000 0112222222246899999999999998776432 23221110
Q ss_pred -h----------------C------CCCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCcc
Q 016444 171 -Y----------------G------SWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (389)
Q Consensus 171 -~----------------g------gw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~ 209 (389)
| . .+.||+..+.|.+..+......|- .-.|+=+|||.+
T Consensus 111 g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 111 GAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred CcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 0 0 147888888888877555554442 356788999974
No 102
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=48.51 E-value=72 Score=31.00 Aligned_cols=84 Identities=10% Similarity=0.103 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecc-cCChhhHHHHhCCCCChH
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH-HDFPQQLEEKYGSWLSPQ 178 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H-~d~P~~l~~~~ggw~~~~ 178 (389)
++|++.+.+.|++.+++.++=|.+.-...-+.--++.++...+.++.++++|+++.+++.. |+.| +.|-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~------~~~~~--- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP------YEGEV--- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC------CCCCC---
Confidence 7899999999999999998666542221112223577888999999999999999988863 5555 13332
Q ss_pred hHHHHHHHHHHHHH
Q 016444 179 MQKEFVHLAKTCFE 192 (389)
Q Consensus 179 ~~~~F~~Ya~~~~~ 192 (389)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 PPERVAEVAERLLD 160 (274)
T ss_pred CHHHHHHHHHHHHH
Confidence 35667777777654
No 103
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=48.42 E-value=29 Score=38.33 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=35.7
Q ss_pred HHHHHHcCCCeEEeccccCccc----c-------CCC--C--CCCCh-----hHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 103 IGIMHSLGVNSYRFSISWPRIL----P-------KGR--F--GKVNP-----AGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 103 i~l~k~lG~~~~Rfsi~Wsri~----P-------~~~--~--g~~n~-----~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
|+-+|+||++++=+.=-=.-.. + .|- . -.++. ..++=+++||++|+++||++|+.+.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7899999999987643111000 0 000 0 01111 1245589999999999999999765
No 104
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=48.23 E-value=82 Score=31.58 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCeeEEEeccc-CChhhHHHH--hCCCCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCcccccc
Q 016444 141 NYLIDNLLLRGIEPFVTIYHH-DFPQQLEEK--YGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDM 213 (389)
Q Consensus 141 ~~~id~l~~~GI~p~vtL~H~-d~P~~l~~~--~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~~~~ 213 (389)
+.++++|++.|++.++.+.-+ ..-..+... +-.|.||++.+.|.+..+.+.+ .|- .-.|+=+|||.+....
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccCC
Confidence 689999999999988766411 100000000 1237889988888776655443 232 3488999999987543
No 105
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.85 E-value=1.5e+02 Score=29.29 Aligned_cols=110 Identities=16% Similarity=0.232 Sum_probs=63.1
Q ss_pred hHHHHHHHHHcCC--CeEEeccccCccccCC-CCC--CCChhHHHHHHHHHHHHHHcCCeeEEEeccc---CChhhHH--
Q 016444 99 FLEDIGIMHSLGV--NSYRFSISWPRILPKG-RFG--KVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQLE-- 168 (389)
Q Consensus 99 y~eDi~l~k~lG~--~~~Rfsi~Wsri~P~~-~~g--~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~---d~P~~l~-- 168 (389)
..+-++.+++.|+ +++=+++.|....... ..| .+|.+-.---+++|+.|+++|++.++.+.-+ +.|..-+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 3444566666664 4666666674432211 011 1222222223689999999999999988644 3343211
Q ss_pred HH-h-------------------C---CCCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccc
Q 016444 169 EK-Y-------------------G---SWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (389)
Q Consensus 169 ~~-~-------------------g---gw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~ 210 (389)
++ | + .++||+..+.|.+..+.+ ...|= --.|+=+|||...
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~Gv-dg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQGV-TGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCCc-cEEEecCCCcccc
Confidence 10 0 1 256899999998877765 33331 2457789999754
No 106
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=47.51 E-value=1.1e+02 Score=32.13 Aligned_cols=87 Identities=24% Similarity=0.444 Sum_probs=58.7
Q ss_pred hHHH-HHHHHHcCCCeEEe-------------------------ccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCC
Q 016444 99 FLED-IGIMHSLGVNSYRF-------------------------SISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGI 152 (389)
Q Consensus 99 y~eD-i~l~k~lG~~~~Rf-------------------------si~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI 152 (389)
++.| ++++|+|.+...|+ .+.|.-.+++. =| -+++++.|+.-|.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~-------~G---t~EF~~~~e~iGa 119 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNE-------FG---THEFMDWCELIGA 119 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccc-------cc---HHHHHHHHHHhCC
Confidence 4556 68899999988884 34444333332 22 3689999999999
Q ss_pred eeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHH--------HHHHhCC----CceEEEEecCC
Q 016444 153 EPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKT--------CFENFGD----RVKYWATLNEP 207 (389)
Q Consensus 153 ~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~--------~~~~~gd----~V~~w~t~NEp 207 (389)
+|++.+.= |. ...+....|.+||.. .-+..|. .|+||.+=||.
T Consensus 120 ep~~avN~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 120 EPYIAVNL-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred ceEEEEec-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 99999862 21 233556667777652 2333444 59999999997
No 107
>PRK10785 maltodextrin glucosidase; Provisional
Probab=46.52 E-value=38 Score=36.70 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=40.1
Q ss_pred hchHHHHHHHHHcCCCeEEeccccCccccCCCC-C-------CCCh--hHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRF-G-------KVNP--AGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 97 ~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~-g-------~~n~--~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
.-..+-++-+++||++++=++= |++.+.. | .+|+ -..+=++++|++++++||++|+.+.
T Consensus 179 ~GI~~kLdYL~~LGv~~I~L~P----if~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 179 DGISEKLPYLKKLGVTALYLNP----IFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC----cccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4456778999999999988763 2222210 0 1121 1235589999999999999999765
No 108
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=46.00 E-value=14 Score=27.88 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=31.4
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEeccc
Q 016444 121 PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (389)
Q Consensus 121 sri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~ 161 (389)
+++.|+. +.=-.++++..-+++..|.++|| +++.|++-
T Consensus 19 s~l~p~~--~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE--GADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc--ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 5778885 55567899999999999999999 88888753
No 109
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=45.95 E-value=80 Score=32.93 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCeEEecc-ccC-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCCh
Q 016444 100 LEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSP 177 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi-~Ws-ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~ 177 (389)
+|.+++|+++|++.+-+++ +-+ ++...- .-..+ ++.+.+.+..++++||.+.+++- +++|. +++
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~-~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlPg---------et~ 352 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNI-KKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLPG---------ETR 352 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-cCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCCC---------CCH
Confidence 5678999999999888887 332 222111 01123 35677899999999999887765 35552 344
Q ss_pred HhHHHHHHHHHH
Q 016444 178 QMQKEFVHLAKT 189 (389)
Q Consensus 178 ~~~~~F~~Ya~~ 189 (389)
+.+..-.+|+..
T Consensus 353 e~~~~ti~~~~~ 364 (472)
T TIGR03471 353 ETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHHHHHh
Confidence 545555555443
No 110
>PRK03705 glycogen debranching enzyme; Provisional
Probab=45.95 E-value=49 Score=36.43 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=36.9
Q ss_pred HHHHHHcCCCeEEeccc-----------------c-------CccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 103 IGIMHSLGVNSYRFSIS-----------------W-------PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 103 i~l~k~lG~~~~Rfsi~-----------------W-------sri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
|+-+|+||++++=+.=- | -.+.|.- |.-....++=+++||++|+++||++|+.+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y--gt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY--ASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc--CCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 88999999999865321 1 1222221 21111235668999999999999999976
Q ss_pred c
Q 016444 159 Y 159 (389)
Q Consensus 159 ~ 159 (389)
.
T Consensus 263 V 263 (658)
T PRK03705 263 V 263 (658)
T ss_pred c
Confidence 4
No 111
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=45.34 E-value=1e+02 Score=31.82 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=60.0
Q ss_pred chHHHHHHHHHcCCCeEEeccccCccccCCC--CC--CCC----hhHHHHHHHHHHHHHHcCCeeEEEec----------
Q 016444 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGR--FG--KVN----PAGINFYNYLIDNLLLRGIEPFVTIY---------- 159 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~--~g--~~n----~~gl~~Y~~~id~l~~~GI~p~vtL~---------- 159 (389)
...+-++.++++|++.+=+.--|..---... -| .+| +.| ...+++.+++.||++=+=+-
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l 135 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNG---LKPLADYIHSLGMKFGLWFEPEMVSPDSDL 135 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTH---HHHHHHHHHHTT-EEEEEEETTEEESSSCH
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCc---HHHHHHHHHHCCCeEEEEeccccccchhHH
Confidence 3556678899999999999989965311100 01 122 234 56899999999999766331
Q ss_pred ccCChhhHHHHh-----CC-------CCChHhHHHHHHHHHHHHHHhC
Q 016444 160 HHDFPQQLEEKY-----GS-------WLSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 160 H~d~P~~l~~~~-----gg-------w~~~~~~~~F~~Ya~~~~~~~g 195 (389)
.-..|.|+...- .| ..+|++.+...+-...+++.+|
T Consensus 136 ~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 136 YREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp CCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 114688864310 11 4578888888888888888886
No 112
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=45.10 E-value=97 Score=32.30 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCeEEecc-ccC-ccccCCCCCCCChhHHHHHHHHHHHHHHcC-CeeEEEecccCChhhHHHHhCCCCC
Q 016444 100 LEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRG-IEPFVTIYHHDFPQQLEEKYGSWLS 176 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi-~Ws-ri~P~~~~g~~n~~gl~~Y~~~id~l~~~G-I~p~vtL~H~d~P~~l~~~~ggw~~ 176 (389)
+|.+++|+++|+|-+-+++ +-+ ++...- |+.. ..+-..+.|+.+++.| +.+.++|- +++|. +
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l--gR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------q- 227 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRA--GRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG---------Q- 227 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHh--CCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------C-
Confidence 6789999999999777777 332 121111 2222 1244567889999999 66777775 57772 1
Q ss_pred hHhHHHHHHHHHHHHHHhCCCceEEEEecCCccccccccccCccC
Q 016444 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTYP 221 (389)
Q Consensus 177 ~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~~~~gy~~g~~~ 221 (389)
+.+.|.+=.+.+.+-=-+.|..+...-||.......+..|..+
T Consensus 228 --T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 228 --TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 2334444444444433467888888888887544334445443
No 113
>PRK05474 xylose isomerase; Provisional
Probab=45.02 E-value=3.9e+02 Score=28.01 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=56.4
Q ss_pred chHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHH----HHHcCCe-eEEEecccCChhhHHHHhC
Q 016444 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDN----LLLRGIE-PFVTIYHHDFPQQLEEKYG 172 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~----l~~~GI~-p~vtL~H~d~P~~l~~~~g 172 (389)
|.+.-++.+.+||+..|-|- =..|.|++ .... +..+..+++++. +.+.||+ +++|..-|..|.... |
T Consensus 80 k~d~afe~~~kLg~~~~~FH--D~D~~peg--~s~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---G 151 (437)
T PRK05474 80 KADAAFEFFTKLGVPYYCFH--DVDVAPEG--ASLK-EYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---G 151 (437)
T ss_pred HHHHHHHHHHHhCCCeeccC--ccccCCCC--CCHH-HHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---C
Confidence 34555778999999987664 34677776 2222 333444555544 5577888 566778889998643 8
Q ss_pred CCCChH--hHHHHHHHHHH---HHHHhCCC
Q 016444 173 SWLSPQ--MQKEFVHLAKT---CFENFGDR 197 (389)
Q Consensus 173 gw~~~~--~~~~F~~Ya~~---~~~~~gd~ 197 (389)
+++||+ +...=+.-++. +.+++|..
T Consensus 152 A~Tnpd~~Vra~A~~qvk~alD~~~eLGge 181 (437)
T PRK05474 152 AATNPDPDVFAYAAAQVKTALDATKRLGGE 181 (437)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 899876 22222222222 46677754
No 114
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=44.80 E-value=2.3e+02 Score=27.03 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
.+|++..++.|++.+|+.++.+.+ .-..+.++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999998876643 1246789999999999998884
No 115
>PRK12568 glycogen branching enzyme; Provisional
Probab=44.70 E-value=39 Score=37.60 Aligned_cols=95 Identities=17% Similarity=0.261 Sum_probs=56.8
Q ss_pred hhchHHH-HHHHHHcCCCeEEecc--------ccC-----ccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec--
Q 016444 96 YHRFLED-IGIMHSLGVNSYRFSI--------SWP-----RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-- 159 (389)
Q Consensus 96 y~~y~eD-i~l~k~lG~~~~Rfsi--------~Ws-----ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~-- 159 (389)
|.-..+. |.-+|+||++++=+.= +|- -..|++.-|. .+=++.+|++|.++||++|+.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~-----~~dfk~lV~~~H~~Gi~VIlD~V~n 342 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGS-----PDGFAQFVDACHRAGIGVILDWVSA 342 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCC-----HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4444444 6889999999986432 341 0011110122 34589999999999999999865
Q ss_pred ccCC----------h-hhHH-H-H---hCC-------CCChHhHHHHHHHHHHHHHHhC
Q 016444 160 HHDF----------P-QQLE-E-K---YGS-------WLSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 160 H~d~----------P-~~l~-~-~---~gg-------w~~~~~~~~F~~Ya~~~~~~~g 195 (389)
|+.- + .+-. + + +.. +.++++.+.+.+=++.-+++|+
T Consensus 343 H~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 343 HFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 4321 1 0100 0 0 012 3457778888888888777775
No 116
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=44.60 E-value=64 Score=30.28 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=43.0
Q ss_pred chhchHHHHHHHHHcCCCeEEeccccCccccCCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEE-ecccCCh
Q 016444 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVT-IYHHDFP 164 (389)
Q Consensus 95 ~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~-~g~~n~~gl~~Y~~~id~l~~~GI~p~vt-L~H~d~P 164 (389)
+-.++++=|+++++||.+.+|+-..+. |... ........++..+++.+.+.+.||...+= +.+++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 446677889999999999998644321 1110 01122344567888888899999987773 3444444
No 117
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=44.36 E-value=5e+02 Score=29.05 Aligned_cols=144 Identities=17% Similarity=0.221 Sum_probs=83.3
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHHHHc-CCeeEEEecccCC-----hhhHHH----HhCCCC---------------
Q 016444 121 PRILPKGRFGKVNPAGINFYNYLIDNLLLR-GIEPFVTIYHHDF-----PQQLEE----KYGSWL--------------- 175 (389)
Q Consensus 121 sri~P~~~~g~~n~~gl~~Y~~~id~l~~~-GI~p~vtL~H~d~-----P~~l~~----~~ggw~--------------- 175 (389)
.|+.|.. .|-++.+-++.+++++|.++++ |-+.++=|.|-.- +.|... .-++|.
T Consensus 459 g~~~~~~-~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~ 537 (765)
T PRK08255 459 GRITPGC-PGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQV 537 (765)
T ss_pred cCCCCCC-CccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCC
Confidence 4566654 4778989999999999999999 6999999998321 111100 002221
Q ss_pred --------ChHhHHHHHHHHHHHHHHhC-CCceEEEEecCCccccccccccCcc-CCC---CCCCCCCCCCCCCCCchHH
Q 016444 176 --------SPQMQKEFVHLAKTCFENFG-DRVKYWATLNEPNLLTDMAYIRGTY-PPT---HCSAPFGNCSAGNSDTEPL 242 (389)
Q Consensus 176 --------~~~~~~~F~~Ya~~~~~~~g-d~V~~w~t~NEp~~~~~~gy~~g~~-~Pg---~~~~~~~~~~~~~~~~~~~ 242 (389)
=.++++.|++=|+.+.+ -| |-|. +-+-.||+...| -|- +++. . |.
T Consensus 538 p~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgve---------ih~ahGyLl~qFlsp~~N~RtD~-----y-GG------ 595 (765)
T PRK08255 538 PREMTRADMDRVRDDFVAAARRAAE-AGFDWLE---------LHCAHGYLLSSFISPLTNQRTDE-----Y-GG------ 595 (765)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EecccchHHHHhcCCCCCCCCCC-----C-CC------
Confidence 12367777776666544 34 3332 334567776543 232 1111 0 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecCcccccCCCChHHH
Q 016444 243 IVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYEPLRDEDSDR 290 (389)
Q Consensus 243 ~~~hn~llAHa~Av~~~r~~~~~~~~~kIG~~~~~~~~yP~~~~p~D~ 290 (389)
.+-|-+.--.+.++.+|+.. .++..||+-++.....+...+++|.
T Consensus 596 -slenR~r~~~eiv~~ir~~~--~~~~~v~~ri~~~~~~~~g~~~~~~ 640 (765)
T PRK08255 596 -SLENRLRYPLEVFRAVRAVW--PAEKPMSVRISAHDWVEGGNTPDDA 640 (765)
T ss_pred -CHHHHhHHHHHHHHHHHHhc--CCCCeeEEEEccccccCCCCCHHHH
Confidence 12355555567788888763 3466899888865544444455554
No 118
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=43.80 E-value=90 Score=35.11 Aligned_cols=101 Identities=22% Similarity=0.342 Sum_probs=62.1
Q ss_pred cCCCeEEeccc-cCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEeccc---CChhh--HHHH-h----------
Q 016444 109 LGVNSYRFSIS-WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQ--LEEK-Y---------- 171 (389)
Q Consensus 109 lG~~~~Rfsi~-Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~---d~P~~--l~~~-~---------- 171 (389)
+=++++++++. |.+ .-+ .=.+|+.-.---+.+|+.|+++||+.++.+... |.|+. +.++ |
T Consensus 294 IP~d~~~lD~~~~~~--~~~-~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWG-DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred CcceEEEEeehhhhc--ccc-ceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 45679999996 876 111 112232222223589999999999999988642 33332 1111 0
Q ss_pred --------C---CCCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCcccccc
Q 016444 172 --------G---SWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDM 213 (389)
Q Consensus 172 --------g---gw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~~~~ 213 (389)
+ .+.||+.++.|.+....-...+| -.-+|.=+|||.+....
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 1 27899999999973333233333 25688899999987544
No 119
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=43.59 E-value=1.5e+02 Score=29.49 Aligned_cols=71 Identities=17% Similarity=0.313 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCeeEEEecccC-----ChhhHHHH-------------h--------C---CCCChHhHHHHHHHHHHHH
Q 016444 141 NYLIDNLLLRGIEPFVTIYHHD-----FPQQLEEK-------------Y--------G---SWLSPQMQKEFVHLAKTCF 191 (389)
Q Consensus 141 ~~~id~l~~~GI~p~vtL~H~d-----~P~~l~~~-------------~--------g---gw~~~~~~~~F~~Ya~~~~ 191 (389)
+.+|++|+++|++.++.++-+- .|..-+.. | . .+.||+.++.|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 5799999999999888776442 22221111 0 0 2678999999999888776
Q ss_pred HHhC-CCceEEEEecCCcccc
Q 016444 192 ENFG-DRVKYWATLNEPNLLT 211 (389)
Q Consensus 192 ~~~g-d~V~~w~t~NEp~~~~ 211 (389)
...+ +-+-.|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 5433 2357889999998754
No 120
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=43.40 E-value=1.7e+02 Score=28.86 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCeeEEEecccC-----ChhhHHHH---h---------------------CCCCChHhHHHHHHHHHHH
Q 016444 140 YNYLIDNLLLRGIEPFVTIYHHD-----FPQQLEEK---Y---------------------GSWLSPQMQKEFVHLAKTC 190 (389)
Q Consensus 140 Y~~~id~l~~~GI~p~vtL~H~d-----~P~~l~~~---~---------------------ggw~~~~~~~~F~~Ya~~~ 190 (389)
..++|+.|+++|++.++.+.-+- .|...+.. | -.|.||+.++.|.+..+.+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 46899999999999887765321 12221110 0 1268999999998888777
Q ss_pred HHHhCCCceEEEEecCCccc
Q 016444 191 FENFGDRVKYWATLNEPNLL 210 (389)
Q Consensus 191 ~~~~gd~V~~w~t~NEp~~~ 210 (389)
....|- .-.|+=+|||..+
T Consensus 146 ~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 146 LNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred hhcCCC-ceEEeeCCCCccH
Confidence 655543 3478889998643
No 121
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=43.15 E-value=1e+02 Score=30.36 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=46.1
Q ss_pred chHHHHHHHHHcCCCeEEecc----ccCccccCC-C-CCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHH
Q 016444 98 RFLEDIGIMHSLGVNSYRFSI----SWPRILPKG-R-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLE 168 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi----~Wsri~P~~-~-~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~ 168 (389)
-+++=|++|+.+|+|.+-+=+ .+.. .|.- . +|.+..+- ++++++-++++||+++..+ |+|.++.
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 377889999999999887643 3322 2221 1 36666644 6899999999999999977 6776654
No 122
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=42.54 E-value=80 Score=30.99 Aligned_cols=65 Identities=22% Similarity=0.370 Sum_probs=47.0
Q ss_pred chHHHHHHHHHcCCCeEEeccc----cCc---cccCC-----------CCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 98 RFLEDIGIMHSLGVNSYRFSIS----WPR---ILPKG-----------RFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~----Wsr---i~P~~-----------~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
..++-|+.|+..++|.+.+-++ |+- ..|+- ..|.+..+ =.+++++-++++||++|.-+
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viPEi- 92 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIPEI- 92 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEEec-
Confidence 3677799999999999887775 521 22321 02455553 46899999999999999987
Q ss_pred ccCChhhHH
Q 016444 160 HHDFPQQLE 168 (389)
Q Consensus 160 H~d~P~~l~ 168 (389)
|+|.+..
T Consensus 93 --D~PGH~~ 99 (303)
T cd02742 93 --DMPGHST 99 (303)
T ss_pred --cchHHHH
Confidence 7887654
No 123
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=42.44 E-value=87 Score=29.54 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhC
Q 016444 137 INFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 137 l~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~g 195 (389)
.+...+.|..|+++|+++++++--+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3556789999999999999999754443211 012455556677776666677775
No 124
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=42.43 E-value=2.4e+02 Score=25.25 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=29.7
Q ss_pred HHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCCh
Q 016444 102 DIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (389)
Q Consensus 102 Di~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P 164 (389)
|.+.+|+.|++.+=+=+. +| .+.+|+ .|..-++.+++.|| .+..|||-.|
T Consensus 13 d~~~~k~~gi~fviiKat------eG-~~y~D~----~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 13 NFNAVKDSGVEVVYIKAT------EG-TTFVDS----YFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CHHHHHhCCCeEEEEEec------CC-CcccCH----hHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 566677777664322221 23 244563 56777788888887 3577777654
No 125
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.32 E-value=1.3e+02 Score=30.17 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=48.5
Q ss_pred HHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCCh
Q 016444 103 IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (389)
Q Consensus 103 i~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P 164 (389)
.+.+|++|.++..|=+=|. |++ +..+|..-.++.+++.++|++.+|--++=+.-+|.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~-~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDE-PDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCC-CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 5889999999999998886 554 355888888999999999999999988877665544
No 126
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=41.99 E-value=33 Score=40.52 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=40.3
Q ss_pred chhchH--HHHHHHHHcCCCeEEeccccCccc-----cCCCC---C-------CCCh--h--HHHHHHHHHHHHHHcCCe
Q 016444 95 HYHRFL--EDIGIMHSLGVNSYRFSISWPRIL-----PKGRF---G-------KVNP--A--GINFYNYLIDNLLLRGIE 153 (389)
Q Consensus 95 ~y~~y~--eDi~l~k~lG~~~~Rfsi~Wsri~-----P~~~~---g-------~~n~--~--gl~~Y~~~id~l~~~GI~ 153 (389)
-|.... +.|+-+|+||++++=+.=-..... +.+.. | .++. . ..+=+++||++|+++||+
T Consensus 183 t~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~ 262 (1221)
T PRK14510 183 TFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIA 262 (1221)
T ss_pred HHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCE
Confidence 344444 668899999999987643221110 00000 0 1111 1 456689999999999999
Q ss_pred eEEEec
Q 016444 154 PFVTIY 159 (389)
Q Consensus 154 p~vtL~ 159 (389)
+|+.+.
T Consensus 263 VILDvV 268 (1221)
T PRK14510 263 VILDVV 268 (1221)
T ss_pred EEEEEc
Confidence 999754
No 127
>PLN02960 alpha-amylase
Probab=41.82 E-value=51 Score=37.45 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=59.6
Q ss_pred cchhchHHH-HHHHHHcCCCeEEeccc--------c-------CccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEE
Q 016444 94 DHYHRFLED-IGIMHSLGVNSYRFSIS--------W-------PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVT 157 (389)
Q Consensus 94 d~y~~y~eD-i~l~k~lG~~~~Rfsi~--------W-------sri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vt 157 (389)
..|.-..+. |.-+|+||++++-+.=- | -.+.+.- |. .+=++.+|++|.++||.+|+.
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y--Gt-----p~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF--GT-----PDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc--CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 456666554 89999999999876421 1 1111110 22 344789999999999999998
Q ss_pred ec--ccCC--hhhHH--H-----------H--hCCC-------CChHhHHHHHHHHHHHHHHhC
Q 016444 158 IY--HHDF--PQQLE--E-----------K--YGSW-------LSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 158 L~--H~d~--P~~l~--~-----------~--~ggw-------~~~~~~~~F~~Ya~~~~~~~g 195 (389)
+. |+.. +.-|. + + +..| .++++.+.+.+=++.-+++|+
T Consensus 486 vV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 486 IVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 74 4321 10010 0 0 0112 357788888888888888885
No 128
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=41.64 E-value=52 Score=37.17 Aligned_cols=57 Identities=25% Similarity=0.263 Sum_probs=42.3
Q ss_pred hhchHHHHHHHHHcCCCeEEeccccC---------------ccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 96 YHRFLEDIGIMHSLGVNSYRFSISWP---------------RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 96 y~~y~eDi~l~k~lG~~~~Rfsi~Ws---------------ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
+....+-+.-+++||++++=+|=-+. +|.|.- | +.+=+++++++++++||.+|+.+.
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l--G-----t~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL--G-----GEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC--C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 45578889999999999987665432 233321 2 345589999999999999999764
No 129
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=41.55 E-value=65 Score=32.47 Aligned_cols=110 Identities=22% Similarity=0.422 Sum_probs=59.0
Q ss_pred hhchHHHHHHHHHcCCCeEE---------------ec---------------cccCccccCCC-CCCCCh----hHHHHH
Q 016444 96 YHRFLEDIGIMHSLGVNSYR---------------FS---------------ISWPRILPKGR-FGKVNP----AGINFY 140 (389)
Q Consensus 96 y~~y~eDi~l~k~lG~~~~R---------------fs---------------i~Wsri~P~~~-~g~~n~----~gl~~Y 140 (389)
|.||++.|+.|+=-|+|.-= ++ +.|.|.-=-.. .|++.. +-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 68899999999988888432 11 13444321110 133322 223445
Q ss_pred HHHHHHHHHcCCeeEEEecccCChhhHHHHh--------C---C-----CCChHhHHHHHHHHHHH----HHHhCCCceE
Q 016444 141 NYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY--------G---S-----WLSPQMQKEFVHLAKTC----FENFGDRVKY 200 (389)
Q Consensus 141 ~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~--------g---g-----w~~~~~~~~F~~Ya~~~----~~~~gd~V~~ 200 (389)
+++++++++-||+|++--+---.|..+.+++ + | |+.| .-+.|.+.++.. .+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 7999999999999999888767899888876 1 2 2333 235677766654 55688 4455
Q ss_pred EE--EecCC
Q 016444 201 WA--TLNEP 207 (389)
Q Consensus 201 w~--t~NEp 207 (389)
+. +|||-
T Consensus 176 Y~~D~FnE~ 184 (333)
T PF05089_consen 176 YAADPFNEG 184 (333)
T ss_dssp EE--TTTTS
T ss_pred eCCCccCCC
Confidence 54 78884
No 130
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.46 E-value=1.4e+02 Score=30.13 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCCh
Q 016444 102 DIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (389)
Q Consensus 102 Di~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P 164 (389)
+.+.+|++|.++..|=+=|. |++ +-.+|..-.++.+++.++|++.+|--++=+.-+|.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~-~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDG-DEEINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCC-CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 46889999999999998886 554 346888888999999999999999999888766544
No 131
>PRK14706 glycogen branching enzyme; Provisional
Probab=41.09 E-value=1.7e+02 Score=32.21 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=52.5
Q ss_pred HHHHHcCCCeEEeccccCccccCCCC-C-------CCCh--hHHHHHHHHHHHHHHcCCeeEEEec--ccC---------
Q 016444 104 GIMHSLGVNSYRFSISWPRILPKGRF-G-------KVNP--AGINFYNYLIDNLLLRGIEPFVTIY--HHD--------- 162 (389)
Q Consensus 104 ~l~k~lG~~~~Rfsi~Wsri~P~~~~-g-------~~n~--~gl~~Y~~~id~l~~~GI~p~vtL~--H~d--------- 162 (389)
+-+|+||++++-+.=- --.|.... | .++. -..+=++.+|++|.++||++|+.+. |+.
T Consensus 175 ~ylk~lG~t~velmPv--~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGV--MEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccch--hcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 5689999999775421 00111000 1 0111 1234478999999999999998754 431
Q ss_pred --Chhh-HHHHhCC----C-------CChHhHHHHHHHHHHHHHHhC
Q 016444 163 --FPQQ-LEEKYGS----W-------LSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 163 --~P~~-l~~~~gg----w-------~~~~~~~~F~~Ya~~~~~~~g 195 (389)
.|.+ ..+...| | .++++.+.+.+=++.-+++|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0000011 2 367888888888888888875
No 132
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=40.75 E-value=1.1e+02 Score=33.28 Aligned_cols=94 Identities=13% Similarity=0.050 Sum_probs=60.8
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChh----hHHHH----
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQ----QLEEK---- 170 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~----~l~~~---- 170 (389)
.++|++.+.+.|++.+|+..+.+.+ +-....++.++++|++..+++.+-+.|. .+.+-
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~ 158 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEEL 158 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 3556899999999999999766543 2356778888999999888877655552 21110
Q ss_pred --h----------CCCCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccc
Q 016444 171 --Y----------GSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (389)
Q Consensus 171 --~----------ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~ 210 (389)
. .|...|. ...+.++.+.++++ .--..-+-|-..+.
T Consensus 159 ~~~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla 206 (582)
T TIGR01108 159 LEMGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGMA 206 (582)
T ss_pred HHcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCcH
Confidence 0 4566655 34555555666665 22345577776654
No 133
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=40.67 E-value=77 Score=32.48 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCeEEecc-cc-CccccCCCCCC-CChhHHHHHHHHHHHHHHcCCe-eEEEecccCChhhHHHHhCCCC
Q 016444 100 LEDIGIMHSLGVNSYRFSI-SW-PRILPKGRFGK-VNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFPQQLEEKYGSWL 175 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi-~W-sri~P~~~~g~-~n~~gl~~Y~~~id~l~~~GI~-p~vtL~H~d~P~~l~~~~ggw~ 175 (389)
++.++.|+++|++.+-+++ +- .++...- |+ .+ .+-..+.++.+++.|++ +-++|- +++|. +
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l--~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------q 179 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALC--GRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH---------Q 179 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHh--CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C
Confidence 6889999999999555555 22 1111111 11 22 23356788999999998 556665 57773 1
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccccccccccCcc
Q 016444 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTY 220 (389)
Q Consensus 176 ~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~~~~gy~~g~~ 220 (389)
+ .+.+.+=++.+.+-=-+.|..+...-||......-+..|.+
T Consensus 180 t---~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 180 T---LEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred C---HHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2 33344434443333235677777777887654444444443
No 134
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=40.27 E-value=77 Score=31.81 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCeEEecc-ccC-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EEecccCCh
Q 016444 100 LEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFP 164 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi-~Ws-ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~-vtL~H~d~P 164 (389)
++.++.|+++|++.+-+++ +-+ ++...- |+. ...+-+.+.|+.+++.|+.++ +.|- +++|
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l--gR~--~~~~~~~~ai~~l~~~G~~~v~~dli-~GlP 162 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL--GRQ--HSAKNIAPAIETALKSGIENISLDLM-YGLP 162 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh--CCC--CCHHHHHHHHHHHHHcCCCeEEEecc-CCCC
Confidence 6889999999999666666 232 233221 221 113557789999999999754 4443 5666
No 135
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=39.31 E-value=2e+02 Score=25.07 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=38.6
Q ss_pred chHHHHHHHHHcCCCeEEeccc-cCc-cccCCCCCCCChhHHHHHHHHHHHHHHcC-CeeEEEe
Q 016444 98 RFLEDIGIMHSLGVNSYRFSIS-WPR-ILPKGRFGKVNPAGINFYNYLIDNLLLRG-IEPFVTI 158 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~-Wsr-i~P~~~~g~~n~~gl~~Y~~~id~l~~~G-I~p~vtL 158 (389)
.-++.++.|+++|++.+.+|++ ++. +...- ....+ .+.+.+.++.+++.| +.+.+.+
T Consensus 98 ~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~-~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 98 LTEELLEALKEAGVNRVSLGVQSGSDEVLKAI-NRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CCHHHHHHHHHcCCCeEEEecccCCHHHHHHh-cCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 3478899999999999999995 543 22111 11122 367889999999999 6555444
No 136
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=38.90 E-value=4.8e+02 Score=27.31 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=54.8
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHH----HHHHcCCe-eEEEecccCChhhHHHHhCC
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLID----NLLLRGIE-PFVTIYHHDFPQQLEEKYGS 173 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id----~l~~~GI~-p~vtL~H~d~P~~l~~~~gg 173 (389)
-+.-++.+.+||+..|-|- =..|.|++ .... +-.+-.+++++ .+.+.||+ +++|..-|..|.... |+
T Consensus 80 ~daaFef~~kLg~~~~~FH--D~D~~peg--~~~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA 151 (434)
T TIGR02630 80 VDAAFEFFEKLGVPYYCFH--DRDIAPEG--ASLR-ETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GA 151 (434)
T ss_pred HHHHHHHHHHhCCCeeccC--ccccCCCC--CCHH-HHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---Cc
Confidence 3444677999999987653 34677886 2222 22233444444 45678888 456778889998753 88
Q ss_pred CCChHhHHHHHHHHHH------HHHHhCCC
Q 016444 174 WLSPQMQKEFVHLAKT------CFENFGDR 197 (389)
Q Consensus 174 w~~~~~~~~F~~Ya~~------~~~~~gd~ 197 (389)
++||+ .+.|+.=++. +.+++|..
T Consensus 152 ~TnPd-~~Vra~A~~qvk~alD~~~eLGge 180 (434)
T TIGR02630 152 ATSPD-ADVFAYAAAQVKKALEVTKKLGGE 180 (434)
T ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99876 3333222222 45667753
No 137
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=38.56 E-value=74 Score=30.75 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecc
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H 160 (389)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5789999999999999987443 2466789999999999999998864
No 138
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=38.53 E-value=56 Score=31.61 Aligned_cols=81 Identities=11% Similarity=0.008 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhH
Q 016444 101 EDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQ 180 (389)
Q Consensus 101 eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~ 180 (389)
.+++.+++.|++.+|+.++=|...-...-|.-.++.++...+.++.+++.|+++.++.-+| .+ +... ..
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~~~---~~ 150 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GYKA---NP 150 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cCCC---CH
Confidence 6899999999999999886554322210133345778899999999999999988876654 11 1112 24
Q ss_pred HHHHHHHHHHHH
Q 016444 181 KEFVHLAKTCFE 192 (389)
Q Consensus 181 ~~F~~Ya~~~~~ 192 (389)
+.+.++++.+.+
T Consensus 151 ~~~~~~~~~~~~ 162 (273)
T cd07941 151 EYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHh
Confidence 556666666654
No 139
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=37.97 E-value=34 Score=30.33 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=41.6
Q ss_pred chhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEE
Q 016444 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV 156 (389)
Q Consensus 95 ~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~v 156 (389)
.....++-+++++.+|.+.+++...+-...+......--...++.++.+.+.+.++|+++.+
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 45678889999999999999999764111111100011123467888888889999987655
No 140
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=37.97 E-value=42 Score=34.56 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCeEEecc------ccCccccCCCCCCCC--hhHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 101 EDIGIMHSLGVNSYRFSI------SWPRILPKGRFGKVN--PAGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 101 eDi~l~k~lG~~~~Rfsi------~Wsri~P~~~~g~~n--~~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
+=++.+++||++++=++= ++.+--... --.+| .-.++-.++++++++++||+.++.+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~D-y~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSD-YTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccc-hhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 567899999999985432 111111110 01122 2346678999999999999999988
No 141
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=37.75 E-value=4.3e+02 Score=26.42 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=32.4
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccC
Q 016444 122 RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD 162 (389)
Q Consensus 122 ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d 162 (389)
+..|.. .+-.+.+-+..++++.+.++++|-+.++=|.|.+
T Consensus 62 ~~~~~~-~~l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G 101 (338)
T cd02933 62 QGYPNT-PGIYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVG 101 (338)
T ss_pred cCCCCC-CccCCHHHHHHHHHHHHHHHhcCCeEEEEcccCc
Confidence 344443 3566888899999999999999999999999954
No 142
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=37.66 E-value=1.1e+02 Score=29.78 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=47.5
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
-++|++...+.|++.+-+.++=|...-...-+.=-++.++.+.++++.++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 479999999999999998886655543321133346789999999999999999998888
No 143
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=36.43 E-value=1e+02 Score=29.25 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=44.2
Q ss_pred ccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhC
Q 016444 117 SISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 117 si~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~g 195 (389)
.+.|..+-++|. -.... .......+++.++++|+++++.+..+....... -..+++..+.|++=+-..+++|+
T Consensus 27 ~~~f~~i~~~G~-l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 27 NLAFANPDANGT-LNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEECCCCe-EEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 445666655542 11111 123467889999999999999997655432111 12456777777766666666664
No 144
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=36.41 E-value=1.2e+02 Score=30.68 Aligned_cols=94 Identities=10% Similarity=0.079 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCC--CCCCChhHHHHHHHHHHHHHHcCCe-eEEEecccCChhhHHHHhCCCCC
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGR--FGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFPQQLEEKYGSWLS 176 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~--~g~~n~~gl~~Y~~~id~l~~~GI~-p~vtL~H~d~P~~l~~~~ggw~~ 176 (389)
++.++.++++|++.+-+++ .-+-++-- -|+.. ..+-..+.++.+++.|+. .-++|- +++|.
T Consensus 103 ~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg----------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT----------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 6789999999999555444 33322210 02211 123456788899999997 455554 56662
Q ss_pred hHhHHHHHHHHHHHHHHhCCCceEEEEecCCccc
Q 016444 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (389)
Q Consensus 177 ~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~ 210 (389)
++.+.|.+=++.+.+-=-+.|..+...=||...
T Consensus 167 -qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 -QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred -CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 235556666666655434678888888888754
No 145
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.33 E-value=1.6e+02 Score=28.65 Aligned_cols=73 Identities=14% Similarity=0.040 Sum_probs=53.5
Q ss_pred cCcchhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHH
Q 016444 92 ADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLE 168 (389)
Q Consensus 92 a~d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~ 168 (389)
+++......+-.+.+|++|++.+|-+..=+|--|.+.+|.. + +.+..+-+.+++.||..+.+.++-..+..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g-~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLG-E---EGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcH-H---HHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 45567778888899999999999999855777766544422 4 4466677778999999999987655544443
No 146
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=35.85 E-value=2.6e+02 Score=27.56 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCeeEEEeccc---CChhhHHHH---h-----------------CC---CCChHhHHHHHHHHHHHHHH
Q 016444 140 YNYLIDNLLLRGIEPFVTIYHH---DFPQQLEEK---Y-----------------GS---WLSPQMQKEFVHLAKTCFEN 193 (389)
Q Consensus 140 Y~~~id~l~~~GI~p~vtL~H~---d~P~~l~~~---~-----------------gg---w~~~~~~~~F~~Ya~~~~~~ 193 (389)
-.++|++|+++|++.++.+.-+ +.+.+-+-+ | .+ |.||+..+.|.+..+.....
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 147 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD 147 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc
Confidence 4689999999999988876422 122211100 0 11 67888888877665544444
Q ss_pred hCCCceEEEEecCCcccc
Q 016444 194 FGDRVKYWATLNEPNLLT 211 (389)
Q Consensus 194 ~gd~V~~w~t~NEp~~~~ 211 (389)
.|= --.|+=+|||....
T Consensus 148 ~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 148 KGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred CCC-cEEEecCCCCCccC
Confidence 442 45788899998653
No 147
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=35.77 E-value=4.8e+02 Score=26.38 Aligned_cols=191 Identities=15% Similarity=0.141 Sum_probs=104.1
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChh----------hHHH-----H--------------hCCC-----C
Q 016444 130 GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQ----------QLEE-----K--------------YGSW-----L 175 (389)
Q Consensus 130 g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~----------~l~~-----~--------------~ggw-----~ 175 (389)
+-.|.+-+.-++++.+.++++|-+.++=|+|-+--. .+.. . ..+- +
T Consensus 71 ~l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt 150 (362)
T PRK10605 71 GLHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALE 150 (362)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCC
Confidence 567888899999999999999999999999943210 0000 0 0000 0
Q ss_pred ---ChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccccccccccCcc-CCCC---CCCCCCCCCCCCCCchHHHHHHHH
Q 016444 176 ---SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTY-PPTH---CSAPFGNCSAGNSDTEPLIVLHNM 248 (389)
Q Consensus 176 ---~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~~~~gy~~g~~-~Pg~---~~~~~~~~~~~~~~~~~~~~~hn~ 248 (389)
=.++++.|++=|+.+.+-==|-|. +.+-.||+...| .|.. .+.+ |. .+-|-
T Consensus 151 ~~eI~~ii~~f~~AA~rA~~AGfDGVE---------Ih~ahGyLl~qFLSp~~N~RtDeY------GG-------slENR 208 (362)
T PRK10605 151 LEEIPGIVNDFRQAIANAREAGFDLVE---------LHSAHGYLLHQFLSPSSNQRTDQY------GG-------SVENR 208 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEE---------EcccccchHHHhcCCcCCCCCCcC------CC-------cHHHH
Confidence 045777888866665553223332 345678877654 3431 1111 11 13355
Q ss_pred HHHHHHHHHHHHHhhccCCCceEEEEecCccc---ccCCCChHH--HHHHHHHHHHhcccccccccc---C--CCChHHH
Q 016444 249 LLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMY---EPLRDEDSD--RQAVSRALAFNVGWMLDPLVF---G--DYPAEMR 318 (389)
Q Consensus 249 llAHa~Av~~~r~~~~~~~~~kIG~~~~~~~~---yP~~~~p~D--~~Aa~~~~~~~~~~flD~~~~---G--~YP~~~~ 318 (389)
+.--.+.++.+|+.. .++ .||+-++.... .+...++++ +..+...... .--++++-.. + .|+..+.
T Consensus 209 ~Rf~~Eiv~aVr~~v--g~~-~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~-giD~i~vs~~~~~~~~~~~~~~~ 284 (362)
T PRK10605 209 ARLVLEVVDAGIAEW--GAD-RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKR-GIAYLHMSEPDWAGGEPYSDAFR 284 (362)
T ss_pred HHHHHHHHHHHHHHc--CCC-eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHc-CCCEEEeccccccCCccccHHHH
Confidence 566667888888864 233 59988876432 122234444 3334333221 1123443221 1 2333443
Q ss_pred HHhhcc--CC-----CCCHHHHHHh--cCCccEEEec
Q 016444 319 EYLGSQ--LP-----RFSKEETKYV--KGSLDFIGIN 346 (389)
Q Consensus 319 ~~l~~~--~p-----~~t~~d~~~i--k~~~DFiGiN 346 (389)
+.+++. .| .+++++.+.+ .+.+|++|+-
T Consensus 285 ~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~g 321 (362)
T PRK10605 285 EKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFG 321 (362)
T ss_pred HHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEEC
Confidence 444432 12 3678877655 4889999985
No 148
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=35.44 E-value=1.8e+02 Score=29.30 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=54.6
Q ss_pred hHHHHHHHHHcCCCeEEecc-cc-CccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EEecccCChhhHHHHhCCCC
Q 016444 99 FLEDIGIMHSLGVNSYRFSI-SW-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWL 175 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi-~W-sri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~-vtL~H~d~P~~l~~~~ggw~ 175 (389)
=++.+++|+++|++.+-+++ += .++...- ....+ .+-..+.++.+++.|+..+ +.+- +++|. +
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l-~r~~~---~~~~~~~i~~l~~~g~~~v~~dli-~GlPg---------q 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKI-GRTHN---EEDVYEAIANAKKAGFDNISIDLI-YALPG---------Q 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEeee-cCCCC---------C
Confidence 37889999999999777766 22 2333322 12223 3556789999999999743 3332 56663 2
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccccc
Q 016444 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTD 212 (389)
Q Consensus 176 ~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~~~ 212 (389)
+. +.|.+=++.+.+.=-+.|..+...-+|.....
T Consensus 165 t~---~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~ 198 (377)
T PRK08599 165 TI---EDFKESLAKALALDIPHYSAYSLILEPKTVFY 198 (377)
T ss_pred CH---HHHHHHHHHHHccCCCEEeeeceeecCCChhH
Confidence 33 33444444443322234544444456665433
No 149
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=35.20 E-value=1.3e+02 Score=30.93 Aligned_cols=84 Identities=20% Similarity=0.432 Sum_probs=57.0
Q ss_pred HHHHHHHHHc-CCCeEEecc--ccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EEecccCChhhHHHHhCCCC
Q 016444 100 LEDIGIMHSL-GVNSYRFSI--SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWL 175 (389)
Q Consensus 100 ~eDi~l~k~l-G~~~~Rfsi--~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~-vtL~H~d~P~~l~~~~ggw~ 175 (389)
.+|++.++++ ++. .++++ .|+. ..| +.++.+.++++||+.. ++...|..|.+ ++|.+.
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH~~~d~--------~~d------~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt 104 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALHIPWDR--------VED------YEELARYAEELGLKIGAINPNLFQDDDY---KFGSLT 104 (378)
T ss_pred HHHHHHHHhhcCCC-CceeeccCCcc--------ccC------HHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCC
Confidence 6777888877 555 66655 4411 122 6778888999999987 77776666654 347787
Q ss_pred Ch--HhHHHHHHHHHHH---HHHhCCC-ceEE
Q 016444 176 SP--QMQKEFVHLAKTC---FENFGDR-VKYW 201 (389)
Q Consensus 176 ~~--~~~~~F~~Ya~~~---~~~~gd~-V~~w 201 (389)
|+ ++.....++++.| ++.+|.. |..|
T Consensus 105 ~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 105 HPDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 75 5677777887765 5778774 4455
No 150
>PTZ00445 p36-lilke protein; Provisional
Probab=35.19 E-value=63 Score=30.59 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCeeEEEecccCChhhHHHHh-CCCCChH---------hHHHHHHHHHHHHH
Q 016444 140 YNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY-GSWLSPQ---------MQKEFVHLAKTCFE 192 (389)
Q Consensus 140 Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~-ggw~~~~---------~~~~F~~Ya~~~~~ 192 (389)
-+.+++.|++.||+.+++= +=.-+...+ |||.++. ....|....+.+-+
T Consensus 31 ~~~~v~~L~~~GIk~Va~D----~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 31 ADKFVDLLNECGIKVIASD----FDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHcCCeEEEec----chhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 4678899999999999843 333333322 8899887 44556665555433
No 151
>PRK01060 endonuclease IV; Provisional
Probab=34.70 E-value=1.8e+02 Score=27.64 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=37.0
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeE
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF 155 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~ 155 (389)
+++-++.++++|++.+=+.+.-++.... +..+.+- .+++-+.+.++||+..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~---~~~~~~~---~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR---KPLEELN---IEAFKAACEKYGISPE 64 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC---CCCCHHH---HHHHHHHHHHcCCCCC
Confidence 7888999999999999998765554432 2455533 4556667889999953
No 152
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=34.05 E-value=95 Score=29.99 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=64.4
Q ss_pred chHHHHHHHHHcCCCeEEeccc----------cC--------------------------ccccCCC-CCCCChhHHHHH
Q 016444 98 RFLEDIGIMHSLGVNSYRFSIS----------WP--------------------------RILPKGR-FGKVNPAGINFY 140 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~----------Ws--------------------------ri~P~~~-~g~~n~~gl~~Y 140 (389)
-|+|-+.+.|++||+.+-+||+ |+ |-+|-|. +-...+++++-.
T Consensus 19 sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM 98 (287)
T COG3623 19 SWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIM 98 (287)
T ss_pred CHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHH
Confidence 3788888888888888888763 44 3445543 223345677777
Q ss_pred HHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHH---HHHHHHHhCCCceEEEEecCCccccc
Q 016444 141 NYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHL---AKTCFENFGDRVKYWATLNEPNLLTD 212 (389)
Q Consensus 141 ~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Y---a~~~~~~~gd~V~~w~t~NEp~~~~~ 212 (389)
.+.|...+.-||+.+= |--||.- .+ =.++++..+|.+= |-.++++++= +--..++.-|-+-+.
T Consensus 99 ~KaI~LA~dLGIRtIQ-LAGYDVY--YE-----~~d~eT~~rFi~g~~~a~~lA~~aqV-~lAvEiMDtpfm~sI 164 (287)
T COG3623 99 EKAIQLAQDLGIRTIQ-LAGYDVY--YE-----EADEETRQRFIEGLKWAVELAARAQV-MLAVEIMDTPFMNSI 164 (287)
T ss_pred HHHHHHHHHhCceeEe-eccceee--ec-----cCCHHHHHHHHHHHHHHHHHHHhhcc-EEEeeecccHHHHHH
Confidence 7888888888887654 3333331 11 1467888888754 4445666642 233446666655443
No 153
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=34.04 E-value=2.4e+02 Score=28.38 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=54.7
Q ss_pred hHHHHHHHHHcCCCeEEecc-ccC-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCe-eEEEecccCChhhHHHHhCCCC
Q 016444 99 FLEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFPQQLEEKYGSWL 175 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi-~Ws-ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~-p~vtL~H~d~P~~l~~~~ggw~ 175 (389)
=++.+++|+++|++.+-+++ +-+ ++...- |.. ...+-..+.++.+++.|+. +.++|- +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l--~R~--~s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg---------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAVL--DRT--HTPGRAVAAAREARAAGFEHVNLDLI-YGTPG---------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCC--CCHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC----------
Confidence 36889999999999666655 222 121111 111 1234567889999999998 656654 45562
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccccc
Q 016444 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTD 212 (389)
Q Consensus 176 ~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~~~ 212 (389)
++.+.|.+=.+.+.+.=-+.|..+...=||+....
T Consensus 172 --qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~ 206 (375)
T PRK05628 172 --ESDDDWRASLDAALEAGVDHVSAYALIVEDGTALA 206 (375)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHH
Confidence 22344444444444322245655555556665443
No 154
>PTZ00445 p36-lilke protein; Provisional
Probab=33.60 E-value=82 Score=29.83 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=41.3
Q ss_pred HHHHHHcCCCeEEeccccCccccCCCCCCCChh---------HHHHHHHHHHHHHHcCCeeEEEec
Q 016444 103 IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPA---------GINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 103 i~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~---------gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
++++++.|++++=+.++=+-|--.- .|-.++. +-.-...++.+|++.||..+|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hs-gG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHS-GGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhc-ccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 6789999999999988777654332 1333332 334577899999999999988775
No 155
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=33.04 E-value=1.6e+02 Score=28.08 Aligned_cols=79 Identities=15% Similarity=0.280 Sum_probs=52.0
Q ss_pred cCcchhchHHHHHHHHHcCCCeEEe----------------------ccccCccccCCCCCCCChhHHHHHHHHHHHHHH
Q 016444 92 ADDHYHRFLEDIGIMHSLGVNSYRF----------------------SISWPRILPKGRFGKVNPAGINFYNYLIDNLLL 149 (389)
Q Consensus 92 a~d~y~~y~eDi~l~k~lG~~~~Rf----------------------si~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~ 149 (389)
+.+---.-+.-|+++++||.+++.| ++ | +||.| -+|. +.+.+++..+++
T Consensus 130 ~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG---GIdl---~Nf~~I~~i~ld 200 (236)
T TIGR03581 130 GKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG---GIDL---DNFEEIVQIALD 200 (236)
T ss_pred CCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC---CccH---HhHHHHHHHHHH
Confidence 3344456788899999999998875 33 3 57775 4664 778999999999
Q ss_pred cCCeeEEEecccCChhhHHHHhCCCCChHhHHHH
Q 016444 150 RGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEF 183 (389)
Q Consensus 150 ~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F 183 (389)
.|++-++ .|- =-..-++-.|-++++-+...
T Consensus 201 aGv~kvi--PHI--YssiIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 201 AGVEKVI--PHV--YSSIIDKETGNTRVEDVKQL 230 (236)
T ss_pred cCCCeec--ccc--ceeccccccCCCCHHHHHHH
Confidence 9998665 220 01122333566776654443
No 156
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=32.81 E-value=1.4e+02 Score=28.54 Aligned_cols=79 Identities=11% Similarity=0.030 Sum_probs=51.6
Q ss_pred HHHHHHHHHcC----CCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCC
Q 016444 100 LEDIGIMHSLG----VNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWL 175 (389)
Q Consensus 100 ~eDi~l~k~lG----~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~ 175 (389)
.+|++++.+.| ++.+|+.++.|.+.-...-+.-..+.++-..+.+..+++.|++..+++.+ .+..
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~~ 140 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATRT 140 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCCC
Confidence 78999999999 99999977655442211012222356777889999999999987755421 2222
Q ss_pred ChHhHHHHHHHHHHHHH
Q 016444 176 SPQMQKEFVHLAKTCFE 192 (389)
Q Consensus 176 ~~~~~~~F~~Ya~~~~~ 192 (389)
..+.+.+.++.+.+
T Consensus 141 ---~~~~~~~~~~~~~~ 154 (268)
T cd07940 141 ---DLDFLIEVVEAAIE 154 (268)
T ss_pred ---CHHHHHHHHHHHHH
Confidence 24556666666543
No 157
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=32.80 E-value=57 Score=36.14 Aligned_cols=65 Identities=28% Similarity=0.497 Sum_probs=42.9
Q ss_pred hhchHHH-HHHHHHcCCCeEEecc--cc-Ccc-----------ccCCCCCCCC-hhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 96 YHRFLED-IGIMHSLGVNSYRFSI--SW-PRI-----------LPKGRFGKVN-PAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 96 y~~y~eD-i~l~k~lG~~~~Rfsi--~W-sri-----------~P~~~~g~~n-~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
|.-+.|+ +.-+|+||.|++.+=- +- +.. -|...-|..+ +.-+.=.+.||+++...||++++.+.
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 8888888 9999999999887311 11 111 1111112222 11144489999999999999999887
Q ss_pred c
Q 016444 160 H 160 (389)
Q Consensus 160 H 160 (389)
|
T Consensus 333 ~ 333 (757)
T KOG0470|consen 333 H 333 (757)
T ss_pred h
Confidence 6
No 158
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=32.69 E-value=1.8e+02 Score=25.19 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCeeEEEecccCChh---hHHHHhCCCCChHhHHHHHHHHHHHHHHhCCC
Q 016444 138 NFYNYLIDNLLLRGIEPFVTIYHHDFPQ---QLEEKYGSWLSPQMQKEFVHLAKTCFENFGDR 197 (389)
Q Consensus 138 ~~Y~~~id~l~~~GI~p~vtL~H~d~P~---~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~ 197 (389)
+=+.-+++.|++.|++|++.+. |. |. + |-|. +++..+.|.+=.+..++++|=+
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~----PvNg~wy-d-ytG~-~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQ----PVNGKWY-D-YTGL-SKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--------HHHH-H-HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHcCCceEEEec----CCcHHHH-H-HhCC-CHHHHHHHHHHHHHHHHHCCCE
Confidence 3357899999999999999884 53 32 2 4565 5666778888888888888764
No 159
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=32.61 E-value=40 Score=24.82 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=24.5
Q ss_pred HHHHHHHH-HcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHH
Q 016444 141 NYLIDNLL-LRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHL 186 (389)
Q Consensus 141 ~~~id~l~-~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Y 186 (389)
+++++.|. ..+|+|.+|.. .|-.-+ +++.+.|..|
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~Le------~eN~eFF~aY 51 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQKLE------KENPEFFKAY 51 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHHHH------HHCHHHHHHh
Confidence 57888884 66999999874 664432 4556677766
No 160
>PLN02389 biotin synthase
Probab=32.12 E-value=1.4e+02 Score=30.57 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=42.6
Q ss_pred chHHHHHHHHHcCCCeEEeccccCc-cccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 98 RFLEDIGIMHSLGVNSYRFSISWPR-ILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~Wsr-i~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
.-+|.++.||+.|++.|-.+++=++ +++.- ...- ..+..-+.++.+++.||++..++-
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i-~~~~---s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNV-ITTR---SYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCc-CCCC---CHHHHHHHHHHHHHcCCeEeEEEE
Confidence 5689999999999999999886233 55543 1111 346677899999999999876653
No 161
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=31.78 E-value=2e+02 Score=32.50 Aligned_cols=105 Identities=15% Similarity=0.284 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCC--eEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec---ccCCh-----------
Q 016444 101 EDIGIMHSLGVN--SYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY---HHDFP----------- 164 (389)
Q Consensus 101 eDi~l~k~lG~~--~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~---H~d~P----------- 164 (389)
+=++.+.++|+. ..=..|+|-.-..+ =.+|..+.-...++++.|+++|++.++++. +-+..
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~ykD---FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~ 391 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYKD---FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKD 391 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhcccc---eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhc
Confidence 335667777776 66666666433322 234554445578999999999999999886 22222
Q ss_pred hhHHH----------HhCC------CCChHhHHHHHHHHHHHHHHhCCCce---EEEEecCCccccc
Q 016444 165 QQLEE----------KYGS------WLSPQMQKEFVHLAKTCFENFGDRVK---YWATLNEPNLLTD 212 (389)
Q Consensus 165 ~~l~~----------~~gg------w~~~~~~~~F~~Ya~~~~~~~gd~V~---~w~t~NEp~~~~~ 212 (389)
.|..+ -..| ++|+++++.+. ..+++|.+.|. +|+-.|||.-+..
T Consensus 392 v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~----~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 392 VLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWL----DELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eeeecccCchhhhcccCCCcccccccCCchHHHHHH----HHHHhhcccCCccceEEECCCcccCCC
Confidence 00000 0012 56676555544 45668888775 8999999976653
No 162
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=31.45 E-value=1.8e+02 Score=28.96 Aligned_cols=73 Identities=21% Similarity=0.357 Sum_probs=49.1
Q ss_pred CccCcch--hchHHHHHHHHHcCCCeEEeccc----c-------CccccCCC--------CCCCChhHHHHHHHHHHHHH
Q 016444 90 DVADDHY--HRFLEDIGIMHSLGVNSYRFSIS----W-------PRILPKGR--------FGKVNPAGINFYNYLIDNLL 148 (389)
Q Consensus 90 ~~a~d~y--~~y~eDi~l~k~lG~~~~Rfsi~----W-------sri~P~~~--------~g~~n~~gl~~Y~~~id~l~ 148 (389)
|+|-.|+ ...++-|+.|+..++|.+.+-++ | +++-..+. .|.+.. +=++++++-++
T Consensus 9 D~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~ 85 (329)
T cd06568 9 DVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAA 85 (329)
T ss_pred eccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHH
Confidence 3444444 34678899999999998876662 3 33322110 133444 44689999999
Q ss_pred HcCCeeEEEecccCChhhHH
Q 016444 149 LRGIEPFVTIYHHDFPQQLE 168 (389)
Q Consensus 149 ~~GI~p~vtL~H~d~P~~l~ 168 (389)
++||++|.-+ |+|.+..
T Consensus 86 ~rgI~vIPEi---D~PGH~~ 102 (329)
T cd06568 86 ERHITVVPEI---DMPGHTN 102 (329)
T ss_pred HcCCEEEEec---CCcHHHH
Confidence 9999999987 7887754
No 163
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=31.44 E-value=5.6e+02 Score=25.90 Aligned_cols=130 Identities=14% Similarity=0.128 Sum_probs=75.3
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCeeEEEecccCC----------h---hhHHHHh--CC------CCC---hHhHHHHHH
Q 016444 130 GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDF----------P---QQLEEKY--GS------WLS---PQMQKEFVH 185 (389)
Q Consensus 130 g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~----------P---~~l~~~~--gg------w~~---~~~~~~F~~ 185 (389)
|-++.+-+.-++++.+.++++|-+.++=|+|-.- | ..+.... .. -+. .++++.|++
T Consensus 75 ~l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~ 154 (370)
T cd02929 75 RLWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVD 154 (370)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHH
Confidence 6778889999999999999999999999999532 0 0000000 00 111 247777877
Q ss_pred HHHHHHHHhCCCceEEEEecCCccccccccccCcc-CCC---CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 016444 186 LAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTY-PPT---HCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRK 261 (389)
Q Consensus 186 Ya~~~~~~~gd~V~~w~t~NEp~~~~~~gy~~g~~-~Pg---~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~Av~~~r~ 261 (389)
=|+.+.+.=-|-|. +-+-.||+...| .|. +.+. . |.+ +-|-+.--.+.++.+|+
T Consensus 155 AA~ra~~aGfDgVE---------ih~ahGyLl~QFlSp~~N~RtD~-----y-GGs-------lenR~Rf~~eii~aIr~ 212 (370)
T cd02929 155 AALRARDAGFDIVY---------VYAAHGYLPLQFLLPRYNKRTDE-----Y-GGS-------LENRARFWRETLEDTKD 212 (370)
T ss_pred HHHHHHHcCCCEEE---------EcccccchHHHhhCccccCCccc-----c-CCC-------hHhhhHHHHHHHHHHHH
Confidence 66665543223232 234557766543 232 1121 1 111 23444445677888887
Q ss_pred hhccCCCceEEEEecCcccccC
Q 016444 262 HFQEKQGGSMGIVLHSMMYEPL 283 (389)
Q Consensus 262 ~~~~~~~~kIG~~~~~~~~yP~ 283 (389)
.. .++..||+-++.....|.
T Consensus 213 ~v--g~~~~v~vRls~~~~~~~ 232 (370)
T cd02929 213 AV--GDDCAVATRFSVDELIGP 232 (370)
T ss_pred Hc--CCCceEEEEecHHHhcCC
Confidence 63 356789988886655553
No 164
>PRK12677 xylose isomerase; Provisional
Probab=31.21 E-value=4.1e+02 Score=27.17 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=54.2
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EEecccCChhhHHHHhCCCCCh
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWLSP 177 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~-vtL~H~d~P~~l~~~~ggw~~~ 177 (389)
.+|-++.++++|++.+=+.. ..+.|-+ ....+--+..+++-+.+.++||++. +|...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~---~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG---ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC---CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 68889999999999886632 2344443 1111111346788888999999966 55554555543 23788774
Q ss_pred H--hHHHHHHHHHH---HHHHhCCC
Q 016444 178 Q--MQKEFVHLAKT---CFENFGDR 197 (389)
Q Consensus 178 ~--~~~~F~~Ya~~---~~~~~gd~ 197 (389)
+ ..+.-.++.+. +++.+|-.
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa~ 129 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGAK 129 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3 23332444443 35567653
No 165
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.17 E-value=1.9e+02 Score=28.64 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=46.6
Q ss_pred chHHHHHHHHHcCCCeEEecc----ccCc---cccCCC-----CCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChh
Q 016444 98 RFLEDIGIMHSLGVNSYRFSI----SWPR---ILPKGR-----FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQ 165 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi----~Wsr---i~P~~~-----~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~ 165 (389)
..++=|+.|+..++|.+.+-+ +|.- -+|+-. .|.+.. +=++++++-++++||++|.-+ |+|.
T Consensus 19 ~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI---d~PG 92 (311)
T cd06570 19 VIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI---DVPG 92 (311)
T ss_pred HHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee---cCcc
Confidence 366778999999999887765 5632 334321 134555 446899999999999999987 7886
Q ss_pred hHH
Q 016444 166 QLE 168 (389)
Q Consensus 166 ~l~ 168 (389)
+..
T Consensus 93 H~~ 95 (311)
T cd06570 93 HAS 95 (311)
T ss_pred chH
Confidence 543
No 166
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.90 E-value=75 Score=30.08 Aligned_cols=62 Identities=6% Similarity=-0.014 Sum_probs=41.1
Q ss_pred cchhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEE
Q 016444 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVT 157 (389)
Q Consensus 94 d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vt 157 (389)
....+++.-|++++.+|.+.+++........+.. ...-+..++.++++.+.+.++||+..+=
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP--NVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 3456777888999999999999864322111110 1111345677888999999999976553
No 167
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=30.88 E-value=65 Score=24.03 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=25.1
Q ss_pred HHHHHHHH-HcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHH
Q 016444 141 NYLIDNLL-LRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLA 187 (389)
Q Consensus 141 ~~~id~l~-~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya 187 (389)
+++++.|. ..||+|.+|. ..|-.-+ +++.+.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~-----~VW~~Le------keN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTR-----FVWYLLE------KENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHH-----HHHHHHH------HHHHHHHHHHh
Confidence 56676665 4899999987 4675433 56677888773
No 168
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=30.51 E-value=1.6e+02 Score=28.96 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccccccccc
Q 016444 137 INFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYI 216 (389)
Q Consensus 137 l~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~~~~gy~ 216 (389)
++-+.+.++.++++||++.+++- +++|. ++.+.+.+=++.+.+-=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 35567899999999999877665 46662 234556666666555434668888888888876655566
Q ss_pred cCccCC
Q 016444 217 RGTYPP 222 (389)
Q Consensus 217 ~g~~~P 222 (389)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 665543
No 169
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=30.28 E-value=2.2e+02 Score=29.17 Aligned_cols=109 Identities=19% Similarity=0.271 Sum_probs=66.6
Q ss_pred chHHHHHHHHHcCCC--eEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEeccc---CCh---hhHHH
Q 016444 98 RFLEDIGIMHSLGVN--SYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFP---QQLEE 169 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~--~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~---d~P---~~l~~ 169 (389)
...+-++.+++.|+- ++=++..|..-... -.+|++-..-.+++++.|+++|++.++.++-+ +.+ ..-..
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~---f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~ 120 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYGD---FTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEA 120 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTBT---T-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHH
T ss_pred HHHHHHHHHHHcCCCccceeccccccccccc---cccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhH
Confidence 356667788877765 45555566553221 24454444446899999999999988876532 222 11111
Q ss_pred H---h-----CC----------------CCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccc
Q 016444 170 K---Y-----GS----------------WLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (389)
Q Consensus 170 ~---~-----gg----------------w~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~ 210 (389)
+ + .| |.+++..+.|.+..+.+++.+|= --+|+=+|||..+
T Consensus 121 ~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 184 (441)
T PF01055_consen 121 KEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGV-DGWWLDFGEPSSF 184 (441)
T ss_dssp HHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCC-ceEEeecCCcccc
Confidence 1 1 12 78999999998888887777653 3567889999875
No 170
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=30.20 E-value=1.9e+02 Score=30.88 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=56.0
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe----cccCChhhHHHH----
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI----YHHDFPQQLEEK---- 170 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL----~H~d~P~~l~~~---- 170 (389)
-+.|++...+.|++.+|+..+.+.+ +-....++.+++.|.....++ .+-..|..+.+-
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv--------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l 164 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDP--------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRL 164 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChH--------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 3457899999999999999876554 223455666666666553333 222233322211
Q ss_pred ------------hCCCCChHhHHHHHHHHHHHHHHhCCCce-EEEEecCCccc
Q 016444 171 ------------YGSWLSPQMQKEFVHLAKTCFENFGDRVK-YWATLNEPNLL 210 (389)
Q Consensus 171 ------------~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~-~w~t~NEp~~~ 210 (389)
-.|-..|. ...+.++.+.+++++.++ ..-+-|-..+.
T Consensus 165 ~~~Gad~I~IkDtaGll~P~---~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA 214 (499)
T PRK12330 165 LDMGADSICIKDMAALLKPQ---PAYDIVKGIKEACGEDTRINLHCHSTTGVT 214 (499)
T ss_pred HHcCCCEEEeCCCccCCCHH---HHHHHHHHHHHhCCCCCeEEEEeCCCCCcH
Confidence 04555654 456666677778863333 44477776654
No 171
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=30.15 E-value=3e+02 Score=28.03 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=55.1
Q ss_pred HHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHH
Q 016444 107 HSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHL 186 (389)
Q Consensus 107 k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Y 186 (389)
.+.|++.+|+ - + |.+-.. -+..+.+++.++++|+-.=+...|-.++.-+.++||+-+.+..++--.++
T Consensus 98 ~~~G~~~iRI-------N--P--GNig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~ 165 (360)
T PRK00366 98 AEAGADALRI-------N--P--GNIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRH 165 (360)
T ss_pred HHhCCCEEEE-------C--C--CCCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHH
Confidence 3779999965 2 3 555210 25678999999999999999999999999999998653444566666677
Q ss_pred HHHHHH
Q 016444 187 AKTCFE 192 (389)
Q Consensus 187 a~~~~~ 192 (389)
++.+-+
T Consensus 166 ~~~le~ 171 (360)
T PRK00366 166 AKILEE 171 (360)
T ss_pred HHHHHH
Confidence 766533
No 172
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.49 E-value=2.7e+02 Score=26.47 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=38.5
Q ss_pred hchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHc-CCeeEE
Q 016444 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLR-GIEPFV 156 (389)
Q Consensus 97 ~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~-GI~p~v 156 (389)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~---~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR---PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC---CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 6689999999999999998888766544432 2233 4456777777777 666554
No 173
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=29.12 E-value=2.1e+02 Score=31.17 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=57.6
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhh----HHH---H-
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQ----LEE---K- 170 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~----l~~---~- 170 (389)
.++|++++++.|++.+|+..+-+.+ +--...++..+++|....+++..-+.|.+ +.+ +
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l 163 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKEL 163 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 4667889999999999998766544 22356677778888877777754333421 111 0
Q ss_pred --h----------CCCCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccc
Q 016444 171 --Y----------GSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (389)
Q Consensus 171 --~----------ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~ 210 (389)
. .|-..|. ...+.++.+-++++ .--..-+-|-..+.
T Consensus 164 ~~~Gad~I~i~Dt~G~~~P~---~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla 211 (592)
T PRK09282 164 EEMGCDSICIKDMAGLLTPY---AAYELVKALKEEVD-LPVQLHSHCTSGLA 211 (592)
T ss_pred HHcCCCEEEECCcCCCcCHH---HHHHHHHHHHHhCC-CeEEEEEcCCCCcH
Confidence 0 3555554 44566666667774 22344477776653
No 174
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=28.96 E-value=1.2e+02 Score=30.38 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecc
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H 160 (389)
.+|++...+.|++.+|+...+++. +--.+.|+.+++.|++..+++..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEe
Confidence 589999999999999998765543 12478999999999999998863
No 175
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=28.62 E-value=2.2e+02 Score=29.39 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCeEEecc-cc-CccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EEecccCCh
Q 016444 100 LEDIGIMHSLGVNSYRFSI-SW-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFP 164 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi-~W-sri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~-vtL~H~d~P 164 (389)
++.+++|+++|++.+-+++ += .++...- |+.. ..+-..+.|+.+++.|+..+ ++|- +++|
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l--~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP 203 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHAL--HRPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIP 203 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHh--CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCC
Confidence 6889999999999666666 32 1222221 2211 23456789999999999864 5553 4666
No 176
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=28.33 E-value=2.3e+02 Score=29.52 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=40.9
Q ss_pred chhchHHH-----HHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChh
Q 016444 95 HYHRFLED-----IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQ 165 (389)
Q Consensus 95 ~y~~y~eD-----i~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~ 165 (389)
.|.+|.+| +++..+-|++.||+.= ..|. ++-...-|...+++|.....+++.-..|.
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiFD------------AlND--~RNl~~ai~a~kk~G~h~q~~i~YT~sPv 152 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIFD------------ALND--VRNLKTAIKAAKKHGAHVQGTISYTTSPV 152 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEech------------hccc--hhHHHHHHHHHHhcCceeEEEEEeccCCc
Confidence 47788888 4788899999999642 2222 34466788889999998888887544443
No 177
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.27 E-value=5.1e+02 Score=24.46 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=35.6
Q ss_pred chHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEE
Q 016444 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV 156 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~v 156 (389)
.+++-++.++++|++.+=+++.=....+.. ..++. ...+.+-+.++++||++..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~--~~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR--LDWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc--cCCCH---HHHHHHHHHHHHcCCceeE
Confidence 378999999999999998764211111111 11233 3467788889999999753
No 178
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=27.87 E-value=1.1e+02 Score=37.59 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=42.7
Q ss_pred hhchHHHHHHHHHcCCCeEEeccccC---------------ccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 016444 96 YHRFLEDIGIMHSLGVNSYRFSISWP---------------RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (389)
Q Consensus 96 y~~y~eDi~l~k~lG~~~~Rfsi~Ws---------------ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~ 159 (389)
+....+-+.-+++||++++=+|=-+. +|-|.- | +.+=+++++++|+++||.+|+.+.
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l--G-----~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI--G-----GEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc--C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 45577889999999999997664443 333332 2 345589999999999999999774
No 179
>PRK09936 hypothetical protein; Provisional
Probab=27.83 E-value=5.4e+02 Score=25.59 Aligned_cols=62 Identities=16% Similarity=0.322 Sum_probs=44.5
Q ss_pred chHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHH
Q 016444 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLE 168 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~ 168 (389)
.|++=++.++.+|+++. =+.|++.--+. -|.- + -+..+.++...+.||+.+|.|+ +| |.|..
T Consensus 39 qWq~~~~~~~~~G~~tL--ivQWt~yG~~~-fg~~--~--g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q 100 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTL--VVQWTRYGDAD-FGGQ--R--GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFM 100 (296)
T ss_pred HHHHHHHHHHHcCCcEE--EEEeeeccCCC-cccc--h--HHHHHHHHHHHHcCCEEEEccc-CC-hHHHH
Confidence 36667889999999985 45899982111 1111 2 4678999999999999999997 45 45544
No 180
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.60 E-value=1.2e+02 Score=28.94 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=40.9
Q ss_pred chhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 95 ~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
.-.++++-+++++++|.+.+++.- .+..+.......-...++.++++++.++++||...+=.
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAG--YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecC--cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 345678889999999999999852 11111110011112346778889999999999887743
No 181
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=27.44 E-value=3.4e+02 Score=27.16 Aligned_cols=92 Identities=22% Similarity=0.182 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCeEEecc-ccC-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EEecccCChhhHHHHhCCCCC
Q 016444 100 LEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWLS 176 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi-~Ws-ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~-vtL~H~d~P~~l~~~~ggw~~ 176 (389)
++.++.++++|+|-+-+++ +-+ ++...- |+.. ..+-..+.++.+++.|++.+ ++|- +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l--gR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg----------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL--GRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL----------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC-----------
Confidence 6889999999999666666 332 222221 3221 13456789999999999855 6664 56662
Q ss_pred hHhHHHHHHHHHHHHHHhCCCceEEEEecCCc
Q 016444 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPN 208 (389)
Q Consensus 177 ~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~ 208 (389)
++.+.|.+-.+.+.+-=-+.|..+...=||+
T Consensus 162 -qt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 -DNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 2244455555554432223454444444444
No 182
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=27.34 E-value=2.4e+02 Score=29.29 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=38.3
Q ss_pred hHHHHHHHHHcCCCeEEecc-ccC-ccccCCCCCCCChhHHHHHHHHHHHHHHcCC-eeEEEecccCCh
Q 016444 99 FLEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGI-EPFVTIYHHDFP 164 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi-~Ws-ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI-~p~vtL~H~d~P 164 (389)
-+|.+++|+++|++.+.+++ +=+ ++...- ...-+ .+-..+.++.+++.|+ .+.++|- +++|
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l-~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAV-NRIQP---FEFTFALVEAARELGFTSINIDLI-YGLP 213 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCcEEEEEE-ccCC
Confidence 47889999999999776666 222 111111 11222 3456788999999999 4555553 4666
No 183
>PRK07094 biotin synthase; Provisional
Probab=25.82 E-value=1.2e+02 Score=29.63 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=42.2
Q ss_pred chHHHHHHHHHcCCCeEEeccc-c-CccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCCh
Q 016444 98 RFLEDIGIMHSLGVNSYRFSIS-W-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~-W-sri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P 164 (389)
.-+|+++.|+++|++.+-++++ - .++...- ....+ .+-+.+.++.+++.||.+..++. +++|
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i-~~~~s---~~~~~~~i~~l~~~Gi~v~~~~i-iGlp 190 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKL-HPGMS---FENRIACLKDLKELGYEVGSGFM-VGLP 190 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCeecceEE-EECC
Confidence 4588999999999999998884 2 2444332 11122 35578899999999998655543 3444
No 184
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=25.40 E-value=2.2e+02 Score=28.82 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=61.6
Q ss_pred ccCcchhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHH
Q 016444 91 VADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEK 170 (389)
Q Consensus 91 ~a~d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~ 170 (389)
+|.=||+ |+-.+. ..+.|++.+|+. + |.+-. -+..+.+++.++++|+-.=+...|-.++.-+.++
T Consensus 76 VADIHFd-~~lAl~-a~~~g~dkiRIN---------P--GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~k 140 (346)
T TIGR00612 76 VADIHFD-YRLAAL-AMAKGVAKVRIN---------P--GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEK 140 (346)
T ss_pred EEeeCCC-cHHHHH-HHHhccCeEEEC---------C--CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHH
Confidence 4555665 343333 336688888863 3 44432 3678999999999999999999999999999999
Q ss_pred hCCCCChHhHHHHHHHHHHHHH
Q 016444 171 YGSWLSPQMQKEFVHLAKTCFE 192 (389)
Q Consensus 171 ~ggw~~~~~~~~F~~Ya~~~~~ 192 (389)
||+-+.+..++--.++++.|-+
T Consensus 141 yg~~t~eamveSAl~~v~~le~ 162 (346)
T TIGR00612 141 YGDATAEAMVQSALEEAAILEK 162 (346)
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 8654444566666667666533
No 185
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=25.27 E-value=5.4e+02 Score=25.52 Aligned_cols=68 Identities=22% Similarity=0.377 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCeeEEEeccc-----CChhhHHHH-------------h--------C---CCCChHhHHHHHHHHHHHH
Q 016444 141 NYLIDNLLLRGIEPFVTIYHH-----DFPQQLEEK-------------Y--------G---SWLSPQMQKEFVHLAKTCF 191 (389)
Q Consensus 141 ~~~id~l~~~GI~p~vtL~H~-----d~P~~l~~~-------------~--------g---gw~~~~~~~~F~~Ya~~~~ 191 (389)
..+|++|+++|++.++.+.-+ +.|..-+.. + + .|.||+..+.|.+.-+.+.
T Consensus 67 ~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 67 KELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 689999999999988755422 123222111 0 1 3688999998877666654
Q ss_pred HHhCCCceEEEEecCCccc
Q 016444 192 ENFGDRVKYWATLNEPNLL 210 (389)
Q Consensus 192 ~~~gd~V~~w~t~NEp~~~ 210 (389)
..|- --.|+=+|||..+
T Consensus 147 -~~Gv-dg~w~D~~Ep~~~ 163 (339)
T cd06604 147 -DLGV-DGIWNDMNEPAVF 163 (339)
T ss_pred -hCCC-ceEeecCCCcccc
Confidence 2332 3467789999865
No 186
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=25.03 E-value=1.9e+02 Score=26.79 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=51.3
Q ss_pred HHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHH
Q 016444 104 GIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEF 183 (389)
Q Consensus 104 ~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F 183 (389)
+.+++.|++.+|+.++=+.......-+.--++.++...++++.+++.|++..+++-+.. .. ..+.+
T Consensus 74 ~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~-----------~~---~~~~~ 139 (237)
T PF00682_consen 74 EAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS-----------RT---DPEEL 139 (237)
T ss_dssp HHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-----------GS---SHHHH
T ss_pred HhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-----------cc---cHHHH
Confidence 34456999999999866654333211333356788899999999999999988775421 12 24566
Q ss_pred HHHHHHHHHH
Q 016444 184 VHLAKTCFEN 193 (389)
Q Consensus 184 ~~Ya~~~~~~ 193 (389)
.++++.+.+.
T Consensus 140 ~~~~~~~~~~ 149 (237)
T PF00682_consen 140 LELAEALAEA 149 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777776555
No 187
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.94 E-value=6.2e+02 Score=24.55 Aligned_cols=109 Identities=16% Similarity=0.235 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCC--CeEEeccccCccc--c---CCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEEecccC-C-h---hh
Q 016444 100 LEDIGIMHSLGV--NSYRFSISWPRIL--P---KGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD-F-P---QQ 166 (389)
Q Consensus 100 ~eDi~l~k~lG~--~~~Rfsi~Wsri~--P---~~~-~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d-~-P---~~ 166 (389)
++-++.+++.|| +++=+.+.|..-- + ++- +=.+|.+-.--...+|++|+++|++.++.++=.. . + ..
T Consensus 28 ~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y 107 (292)
T cd06595 28 LALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQY 107 (292)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHH
Confidence 444555555554 4666666674311 0 000 0123332223347899999999999998775221 1 1 11
Q ss_pred --HHHHhC-----------CCCChHhHHHHHHHHHHHHHHhCCCce-EEEEecCCccc
Q 016444 167 --LEEKYG-----------SWLSPQMQKEFVHLAKTCFENFGDRVK-YWATLNEPNLL 210 (389)
Q Consensus 167 --l~~~~g-----------gw~~~~~~~~F~~Ya~~~~~~~gd~V~-~w~t~NEp~~~ 210 (389)
+..+.+ .+.||+..+.|.+-........| |+ .|.=+|||...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G--idg~W~D~~E~~~~ 163 (292)
T cd06595 108 PEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG--VDFWWLDWQQGNRT 163 (292)
T ss_pred HHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC--CcEEEecCCCCccc
Confidence 111111 26777776655443333333333 44 67788998754
No 188
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=24.85 E-value=2.3e+02 Score=22.03 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=31.4
Q ss_pred HHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 104 GIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 104 ~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
+.++.+|+.++|-| .. ..|.+-+.+++..|+ .|....+|.
T Consensus 27 ~~~~~~G~~~iRGS-------s~-------rgg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------SS-------RGGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC-------CC-------CcHHHHHHHHHHHHH-CCCeEEEeC
Confidence 67889999999999 12 235667889999998 788777765
No 189
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.77 E-value=1.6e+02 Score=30.62 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCeEEeccccCccccCCC---CCCCChhHHHHHHHHHHHHHHcCCe-eEEEecccCCh
Q 016444 100 LEDIGIMHSLGVNSYRFSISWPRILPKGR---FGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFP 164 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~---~g~~n~~gl~~Y~~~id~l~~~GI~-p~vtL~H~d~P 164 (389)
+|.+++|+++|++.+-+++ .-.-|+-- ....+ .+-..+.++.+++.|++ .-++|- +++|
T Consensus 152 ~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dli-~GlP 214 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV--QDFDPQVQKAINRIQP---EEMVARAVELLRAAGFESINFDLI-YGLP 214 (453)
T ss_pred HHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-EeCC
Confidence 7889999999999555555 32222110 01122 34567899999999997 445553 4666
No 190
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=24.69 E-value=54 Score=20.07 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCee
Q 016444 141 NYLIDNLLLRGIEP 154 (389)
Q Consensus 141 ~~~id~l~~~GI~p 154 (389)
.++++.+++.||+|
T Consensus 21 ~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 21 LQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHhCCCC
Confidence 57888888999987
No 191
>PRK10426 alpha-glucosidase; Provisional
Probab=24.68 E-value=6.3e+02 Score=27.76 Aligned_cols=106 Identities=22% Similarity=0.249 Sum_probs=63.2
Q ss_pred hHHHHHHHHHcCCC--eEEeccccCccccC--CCC----CCCChhHHHHHHHHHHHHHHcCCeeEEEeccc---CChhhH
Q 016444 99 FLEDIGIMHSLGVN--SYRFSISWPRILPK--GRF----GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQL 167 (389)
Q Consensus 99 y~eDi~l~k~lG~~--~~Rfsi~Wsri~P~--~~~----g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~---d~P~~l 167 (389)
..+-++.+++.|+. ++=+. .|+..... +.. =.+|.+-.--.+++|++|++.|++.++.+.=+ +.|..-
T Consensus 223 v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 44557788888865 44344 67644221 100 02233222224789999999999988877532 334332
Q ss_pred HHH---h------C---------------CCCChHhHHHHHHHHHHHHHHhCCCceEE-EEecCC
Q 016444 168 EEK---Y------G---------------SWLSPQMQKEFVHLAKTCFENFGDRVKYW-ATLNEP 207 (389)
Q Consensus 168 ~~~---~------g---------------gw~~~~~~~~F~~Ya~~~~~~~gd~V~~w-~t~NEp 207 (389)
+.+ | | .+.||+..+.|.+..+......| |+.| .=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 211 0 1 16899999999887765555555 6555 678994
No 192
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=24.55 E-value=2.2e+02 Score=23.61 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCeEEeccc-cCcc-ccCCCCCCCChhHHHHHHHHHHHHHHcCCee
Q 016444 100 LEDIGIMHSLGVNSYRFSIS-WPRI-LPKGRFGKVNPAGINFYNYLIDNLLLRGIEP 154 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~-Wsri-~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p 154 (389)
++.++.+++.|++.+++|++ -+.- .-.. -+ .....+..-+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~-~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRI-IN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHH-HS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhh-hc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999993 3321 1111 00 1123466778999999999996
No 193
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=24.53 E-value=3.4e+02 Score=27.66 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=54.4
Q ss_pred cCcchhchHHHHHHHHHcCCC-------eEE-------eccccCccccCCC-CCCCC-hhHHHHHHHHHHHHHHcCCeeE
Q 016444 92 ADDHYHRFLEDIGIMHSLGVN-------SYR-------FSISWPRILPKGR-FGKVN-PAGINFYNYLIDNLLLRGIEPF 155 (389)
Q Consensus 92 a~d~y~~y~eDi~l~k~lG~~-------~~R-------fsi~Wsri~P~~~-~g~~n-~~gl~~Y~~~id~l~~~GI~p~ 155 (389)
.++....-.|-.+.+|+++-+ ..| .+..|.-+.-++. +|.+| ++|+..-++++-++.+.|+...
T Consensus 63 SI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~e~Glp~a 142 (353)
T PRK12755 63 SIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLVELGLPLA 142 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHHHhCCCEE
Confidence 344455556666677777654 555 7888988875554 67887 7999999999888999998666
Q ss_pred EEecccCChhhHHH
Q 016444 156 VTIYHHDFPQQLEE 169 (389)
Q Consensus 156 vtL~H~d~P~~l~~ 169 (389)
--+..-..|+.+.+
T Consensus 143 tE~ld~~~~~y~~D 156 (353)
T PRK12755 143 TEALDPISPQYLGD 156 (353)
T ss_pred EEecCcccHHHHHh
Confidence 55544445555544
No 194
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=23.85 E-value=2.2e+02 Score=28.59 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=48.2
Q ss_pred CccCcch--hchHHHHHHHHHcCCCeEEeccc----cCccc----cC----CC---CCCCChhHHHHHHHHHHHHHHcCC
Q 016444 90 DVADDHY--HRFLEDIGIMHSLGVNSYRFSIS----WPRIL----PK----GR---FGKVNPAGINFYNYLIDNLLLRGI 152 (389)
Q Consensus 90 ~~a~d~y--~~y~eDi~l~k~lG~~~~Rfsi~----Wsri~----P~----~~---~g~~n~~gl~~Y~~~id~l~~~GI 152 (389)
|+|-.|+ ...++-|+.|+..++|.+.+=++ | ||+ |+ |. .|.+.. +=++++|+-++++||
T Consensus 9 DvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~-rle~~~~P~Lt~~ga~~~~~~YT~---~di~eiv~yA~~rgI 84 (348)
T cd06562 9 DTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSF-PLESPSYPELSKKGAYSPSEVYTP---EDVKEIVEYARLRGI 84 (348)
T ss_pred eccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCc-eEeeCCCchhhhccCcCCCceECH---HHHHHHHHHHHHcCC
Confidence 3444443 34677789999999998876552 3 232 21 10 123444 447899999999999
Q ss_pred eeEEEecccCChhhHH
Q 016444 153 EPFVTIYHHDFPQQLE 168 (389)
Q Consensus 153 ~p~vtL~H~d~P~~l~ 168 (389)
++|.-+ |+|.+..
T Consensus 85 ~vIPEI---D~PGH~~ 97 (348)
T cd06562 85 RVIPEI---DTPGHTG 97 (348)
T ss_pred EEEEec---cCchhhH
Confidence 999987 8887654
No 195
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=23.82 E-value=4.1e+02 Score=26.78 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=48.3
Q ss_pred HHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCCh
Q 016444 103 IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (389)
Q Consensus 103 i~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P 164 (389)
.+.+|++|.++..|=+=|. |++ +-.+|..-.++.+++.++|++.||--++=+.-+|.+
T Consensus 112 ~~rike~GadavK~Llyy~---pD~-~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 112 AKRLKEQGANAVKFLLYYD---VDD-AEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred HHHHHHhCCCeEEEEEEeC---CCC-ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 6889999999999988774 333 246888888999999999999999999988776654
No 196
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=22.93 E-value=3.2e+02 Score=28.40 Aligned_cols=89 Identities=18% Similarity=0.295 Sum_probs=57.5
Q ss_pred hHHHHHHHHHcCCCeEEecc--ccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EEecccCChhh--HHHHhCC
Q 016444 99 FLEDIGIMHSLGVNSYRFSI--SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQ--LEEKYGS 173 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi--~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~-vtL~H~d~P~~--l~~~~gg 173 (389)
-.+|++.+.++.--.-|+++ .|. .+|.+.++ +.++++||..- ++..-|..|+. -.=++|.
T Consensus 72 ~i~D~~~v~~Lt~~~~~v~LH~~wd---------~vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GS 136 (412)
T TIGR02629 72 KLEDCAVIQQLTRATPNVSLHIPWD---------KADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGS 136 (412)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCC---------cCCHHHHH------HHHHHcCCccceeccccccCcccccccccccc
Confidence 36788888888766667666 782 13654444 88999999988 66665666632 1112467
Q ss_pred CCCh--HhHHHHHHHHHHH---HHHhCCC-ceEEE
Q 016444 174 WLSP--QMQKEFVHLAKTC---FENFGDR-VKYWA 202 (389)
Q Consensus 174 w~~~--~~~~~F~~Ya~~~---~~~~gd~-V~~w~ 202 (389)
..|| ++.+...+-+..| .++.|.+ |..|+
T Consensus 137 LtnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 137 LSHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 7775 4667777776654 5667765 44443
No 197
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.66 E-value=6.6e+02 Score=23.75 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=37.8
Q ss_pred chHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEE
Q 016444 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV 156 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~v 156 (389)
.++|-+++++++|++.+=+++......+.. -..+. .....+-+.+.++||++..
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~--~~~~~---~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDETDDRLSR--LDWSR---EQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCccchhhc--cCCCH---HHHHHHHHHHHHcCCCcee
Confidence 478999999999999999976543322222 11222 3456788899999998754
No 198
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.59 E-value=1.5e+02 Score=27.96 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=39.4
Q ss_pred chhchHHHHHHHHHcCCCeEEeccccCcc-ccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 016444 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRI-LPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (389)
Q Consensus 95 ~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri-~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL 158 (389)
...+.++-|+.+++||.+.+|+. ..... .+.. ...-...++..+++.+.+.++||+..+=-
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~~--~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 92 ALEIMKKAIRLAQDLGIRTIQLA-GYDVYYEEKS--EETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEC-Cccccccccc--HHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 34556777899999999999974 11111 1111 11112446678888999999999877743
No 199
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=22.33 E-value=4.7e+02 Score=23.63 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCC--eEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChh
Q 016444 101 EDIGIMHSLGVN--SYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQ 165 (389)
Q Consensus 101 eDi~l~k~lG~~--~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~ 165 (389)
.|.+.+|+.|++ .+|.+ +| .+..|+ .+..-++.++++||. +..|||-.|.
T Consensus 16 ~dw~~vk~~Gi~faiikat--------eG-~~~~D~----~~~~n~~~A~~aGl~--vG~Yhf~~~~ 67 (192)
T cd06522 16 ADYNKLKNYGVKAVIVKLT--------EG-TTYRNP----YAASQIANAKAAGLK--VSAYHYAHYT 67 (192)
T ss_pred HHHHHHHHcCCCEEEEEEc--------CC-CCccCh----HHHHHHHHHHHCCCe--eEEEEEEecC
Confidence 477889999998 44542 44 355674 578899999999994 6899987763
No 200
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=22.20 E-value=1.4e+02 Score=29.29 Aligned_cols=61 Identities=15% Similarity=0.299 Sum_probs=43.7
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHh
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY 171 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ 171 (389)
.++-+++++++|++.+.+..= +.=+++.+++|+++++.+.+++| +|.+|--..|.=++..|
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~----------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTy 168 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM----------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTY 168 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE------------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCS
T ss_pred HHHHHHHHHHcCCCEEeeCcC----------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccC
Confidence 477799999999999998762 22468999999999999999976 66666555665555444
No 201
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=22.13 E-value=1.6e+02 Score=32.51 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCC----h-HhHHHHHHHHHHHHHHhCCCceEEEEecCCcc
Q 016444 142 YLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLS----P-QMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (389)
Q Consensus 142 ~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~----~-~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~ 209 (389)
.++.+.++++=..-+....|..|.|+. +||.. + .++....++..-+.+.+|-.++|-=++||=..
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~ 185 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGF 185 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS--
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCC
Confidence 578889988877777778899999996 34433 2 23444456666677888888999889999654
No 202
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.92 E-value=5.1e+02 Score=24.35 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=36.6
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEE
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVT 157 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vt 157 (389)
+++-++.++++|++.+=+++.=.+..+.. ..++. .....+-+.+.++||+....
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~--~~~~~---~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLAR--LDWSK---EERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCccccccc--ccCCH---HHHHHHHHHHHHcCCCceEE
Confidence 68899999999999998876411111111 22343 33567888899999997643
No 203
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.89 E-value=2.3e+02 Score=27.16 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=38.9
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEeccc
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~ 161 (389)
..+-++.++++|.+++-+-+..+|.-..+ .+++..+ +.+-..+.++++.......|-
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~---~~~~~~~---~~~~~~~~~~~~~~~~i~~Ha 69 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRP---MLEEEVI---DWFKAALETNKNLSQIVLVHA 69 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCC---CCCHHHH---HHHHHHHHHcCCCCcceeccC
Confidence 46678999999999999999888876543 3444333 334445788888744344553
No 204
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=21.81 E-value=70 Score=30.28 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCceEEEEecCCcc
Q 016444 185 HLAKTCFENFGDRVKYWATLNEPNL 209 (389)
Q Consensus 185 ~Ya~~~~~~~gd~V~~w~t~NEp~~ 209 (389)
...+.+.+. +..+++++.||||+.
T Consensus 54 ~~~~~v~~~-~~~~~~ll~fNEPD~ 77 (239)
T PF11790_consen 54 DWLANVQNA-HPGSKHLLGFNEPDL 77 (239)
T ss_pred HHHHHHHhh-ccCccceeeecCCCC
No 205
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.75 E-value=3.5e+02 Score=28.52 Aligned_cols=60 Identities=10% Similarity=-0.009 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCeEEeccc-cC-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCCh
Q 016444 100 LEDIGIMHSLGVNSYRFSIS-WP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi~-Ws-ri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P 164 (389)
++-+++|+++|++.+-++++ =+ ++...- ....+. +-..+.|+.++++||.+.+.+- +++|
T Consensus 287 ~ell~~l~~aG~~~v~iGiES~~~~~L~~~-~K~~t~---~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGTEAAAQATLDHF-RKGTTT---STNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred HHHHHHHHHhCCcEEEEccccCCHHHHHHh-cCCCCH---HHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 45578899999988877772 22 222221 112332 4467899999999999877654 3555
No 206
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=21.71 E-value=4.7e+02 Score=25.55 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=39.5
Q ss_pred hHHHHHHHHHcCCCeEE-eccc-c-----CccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCCh
Q 016444 99 FLEDIGIMHSLGVNSYR-FSIS-W-----PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~R-fsi~-W-----sri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P 164 (389)
.+|.++.||++|++.+- .+.+ - .++.|++ .. .+-+.+.++.+++.||++..++- +++|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~----~t---~~~~l~~i~~a~~~Gi~~~s~~i-iG~~ 170 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNK----LS---SDEWLEVIKTAHRLGIPTTATMM-FGHV 170 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCC----CC---HHHHHHHHHHHHHcCCCceeeEE-ecCC
Confidence 47889999999999885 2321 1 1233432 23 24567999999999999988764 3444
No 207
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=21.63 E-value=4.2e+02 Score=25.52 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=46.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCc
Q 016444 129 FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPN 208 (389)
Q Consensus 129 ~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~ 208 (389)
+|.+|+++ ++++++.+.+.|+.-++.+-+- |-+ ..-+.+...+.++.+.+.-+++++.+.-....+
T Consensus 13 ~g~iD~~~---~~~~i~~l~~~Gv~Gi~~~Gst----------GE~-~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s 78 (285)
T TIGR00674 13 DGSVDFAA---LEKLIDFQIENGTDAIVVVGTT----------GES-PTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNA 78 (285)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECccC----------ccc-ccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCcc
Confidence 68999966 5799999999999999976431 111 112345567777777777788888777655544
Q ss_pred c
Q 016444 209 L 209 (389)
Q Consensus 209 ~ 209 (389)
+
T Consensus 79 ~ 79 (285)
T TIGR00674 79 T 79 (285)
T ss_pred H
Confidence 3
No 208
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=21.53 E-value=5.4e+02 Score=25.82 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCCeEEecc-cc-CccccCCCCCCCChhHHHHHHHHHHHHHHcCCe-eEEEecccCChhhHHHHhCCCCC
Q 016444 100 LEDIGIMHSLGVNSYRFSI-SW-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFPQQLEEKYGSWLS 176 (389)
Q Consensus 100 ~eDi~l~k~lG~~~~Rfsi-~W-sri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~-p~vtL~H~d~P~~l~~~~ggw~~ 176 (389)
+|.+++|+++|++.+-+++ += .++...- ....+ .+-+.+.++.+++.|+. +.++|- +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l-~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg----------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQL-NRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI----------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC-----------
Confidence 6889999999999655555 22 1222221 11223 24567899999999997 445554 56662
Q ss_pred hHhHHHHHHHHHHHHHHhCCCceEEEEecCCcc
Q 016444 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (389)
Q Consensus 177 ~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~ 209 (389)
++.+.|.+=.+.+.+-=-+.|..+...=||..
T Consensus 167 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 167 -LKLKDLDEVFNFILKHKINHISFYSLEIKEGS 198 (353)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCC
Confidence 23444555555443322244554444445553
No 209
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=21.46 E-value=2.3e+02 Score=27.35 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=33.1
Q ss_pred chhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHH
Q 016444 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNL 147 (389)
Q Consensus 95 ~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l 147 (389)
-....++||+.++++|++.+=|++- +. +|.+|.+.+ .++++.+
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L------~~-dg~vD~~~~---~~Li~~a 113 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVL------DV-DGHVDMPRM---RKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeE------CC-CCCcCHHHH---HHHHHHh
Confidence 4567899999999999999999873 12 478998554 5666666
No 210
>PRK09389 (R)-citramalate synthase; Provisional
Probab=21.22 E-value=1.5e+02 Score=31.37 Aligned_cols=108 Identities=14% Similarity=-0.011 Sum_probs=69.0
Q ss_pred hHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccC--ChhhHHHH------
Q 016444 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD--FPQQLEEK------ 170 (389)
Q Consensus 99 y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d--~P~~l~~~------ 170 (389)
-++|++.+.+.|++.+++.++-|.+.-...-+.--++.++...+.+..+++.|+++.+++-... -|..+.+-
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~ 154 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIE 154 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHh
Confidence 4899999999999999999977766433211222356788888999999999999888876432 12222211
Q ss_pred h----------CCCCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCccc
Q 016444 171 Y----------GSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (389)
Q Consensus 171 ~----------ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~~~ 210 (389)
. -|...|. .+.++++.+.++++- .--+-.-|-..+.
T Consensus 155 ~Ga~~i~l~DTvG~~~P~---~~~~lv~~l~~~~~v-~l~~H~HND~GlA 200 (488)
T PRK09389 155 AGADRICFCDTVGILTPE---KTYELFKRLSELVKG-PVSIHCHNDFGLA 200 (488)
T ss_pred CCCCEEEEecCCCCcCHH---HHHHHHHHHHhhcCC-eEEEEecCCccHH
Confidence 1 2444444 445556666666541 1234467777654
No 211
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=21.12 E-value=2.9e+02 Score=30.76 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHH
Q 016444 139 FYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFE 192 (389)
Q Consensus 139 ~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~ 192 (389)
....+++.|+++|+-.=+...|-.++.-+..+||. +.+..++--.+|++.|-+
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999999875 334466666666666543
No 212
>PRK10658 putative alpha-glucosidase; Provisional
Probab=20.86 E-value=6.4e+02 Score=27.90 Aligned_cols=101 Identities=19% Similarity=0.231 Sum_probs=59.7
Q ss_pred HHHHHHcCC--CeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEeccc---CChhhHHHH---h---
Q 016444 103 IGIMHSLGV--NSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQLEEK---Y--- 171 (389)
Q Consensus 103 i~l~k~lG~--~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~---d~P~~l~~~---~--- 171 (389)
++.+++.|+ +++-+.+.|.+-.--+ +=.+|.+-.---+.||++|+++|++.++.+.-+ +.|.+-+.. |
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~-~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk 367 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWC-DFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLK 367 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCcee-eeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEE
Confidence 466666665 5777777775432111 112232211113679999999999998876532 223221111 0
Q ss_pred -------------C-----CCCChHhHHHHHHHHHHHHHHhCCCce-EEEEecCC
Q 016444 172 -------------G-----SWLSPQMQKEFVHLAKTCFENFGDRVK-YWATLNEP 207 (389)
Q Consensus 172 -------------g-----gw~~~~~~~~F~~Ya~~~~~~~gd~V~-~w~t~NEp 207 (389)
| .++||+..+.|.+..+.+.+ .| |+ .|.=+||+
T Consensus 368 ~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G--vdgfw~D~gE~ 419 (665)
T PRK10658 368 RPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG--VDCFKTDFGER 419 (665)
T ss_pred CCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC--CcEEEecCCce
Confidence 1 16899999999988877654 44 43 56667886
No 213
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.65 E-value=4.2e+02 Score=25.32 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=45.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCChhhHHHHhCCCCChHhHHHHHHHHHHHHHHhCCCceEEEEecCCc
Q 016444 129 FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPN 208 (389)
Q Consensus 129 ~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~t~NEp~ 208 (389)
+|.+|+++ +++.|+.|.+.|+..++.+-+- |-. ..-+.+...+.++.+.++-++++....-...++
T Consensus 15 dg~iD~~~---~~~~i~~l~~~Gv~gl~v~Gst----------GE~-~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 80 (284)
T cd00950 15 DGSVDFDA---LERLIEFQIENGTDGLVVCGTT----------GES-PTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNN 80 (284)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCC----------cch-hhCCHHHHHHHHHHHHHHhCCCCcEEeccCCcc
Confidence 68999966 5799999999999999876431 111 112355667777777787778887666555444
No 214
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=20.50 E-value=2.8e+02 Score=24.83 Aligned_cols=95 Identities=11% Similarity=0.099 Sum_probs=55.5
Q ss_pred CCCCCCCccCcchhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecccCC
Q 016444 84 ENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDF 163 (389)
Q Consensus 84 ~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~vtL~H~d~ 163 (389)
..+.+|+.+.+...|+++++... ..+.+=+.+-=..+. .|..-.+-.+-++.+|+.++++|.++++.. ..+
T Consensus 48 N~Gi~G~tt~~~~~rl~~~l~~~---~pd~Vii~~GtND~~----~~~~~~~~~~~l~~li~~~~~~~~~~ill~--~~~ 118 (191)
T PRK10528 48 NASISGDTSQQGLARLPALLKQH---QPRWVLVELGGNDGL----RGFPPQQTEQTLRQIIQDVKAANAQPLLMQ--IRL 118 (191)
T ss_pred ecCcCcccHHHHHHHHHHHHHhc---CCCEEEEEeccCcCc----cCCCHHHHHHHHHHHHHHHHHcCCCEEEEE--eec
Confidence 34677888888888998876532 222222222111111 111112445778999999999999988743 224
Q ss_pred hhhHHHHhCCCCChHhHHHHHHHHHHHHHHhC
Q 016444 164 PQQLEEKYGSWLSPQMQKEFVHLAKTCFENFG 195 (389)
Q Consensus 164 P~~l~~~~ggw~~~~~~~~F~~Ya~~~~~~~g 195 (389)
|.+. ++...+.+.+..+.++++++
T Consensus 119 P~~~--------~~~~~~~~~~~~~~~a~~~~ 142 (191)
T PRK10528 119 PANY--------GRRYNEAFSAIYPKLAKEFD 142 (191)
T ss_pred CCcc--------cHHHHHHHHHHHHHHHHHhC
Confidence 5322 12335567777778888886
No 215
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=20.35 E-value=4.2e+02 Score=25.48 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=40.0
Q ss_pred chhchHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHH---------------------HHHHHHHHHHcCCe
Q 016444 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINF---------------------YNYLIDNLLLRGIE 153 (389)
Q Consensus 95 ~y~~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~---------------------Y~~~id~l~~~GI~ 153 (389)
-+.-.++||++.+++|++.+=|+..= + +|.+|.+.++. -.+-++.|.+.|++
T Consensus 71 E~~iM~~DI~~~~~lG~~GVV~G~lt----~---dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~ 143 (241)
T COG3142 71 ELEIMLEDIRLARELGVQGVVLGALT----A---DGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVE 143 (241)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEeeec----C---CCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCc
Confidence 35568999999999999999887531 1 35666544322 23457778899999
Q ss_pred eEEEe
Q 016444 154 PFVTI 158 (389)
Q Consensus 154 p~vtL 158 (389)
=++|=
T Consensus 144 RILTs 148 (241)
T COG3142 144 RILTS 148 (241)
T ss_pred EEecC
Confidence 88864
No 216
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=20.09 E-value=7.2e+02 Score=25.38 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=53.1
Q ss_pred chHHHHHHHHHcCCCeEEeccccCccccCCCCCCCChhHHHHHHHHHHHHHHcCCeeEE-EecccCChhhHHHHhCCCCC
Q 016444 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV-TIYHHDFPQQLEEKYGSWLS 176 (389)
Q Consensus 98 ~y~eDi~l~k~lG~~~~Rfsi~Wsri~P~~~~g~~n~~gl~~Y~~~id~l~~~GI~p~v-tL~H~d~P~~l~~~~ggw~~ 176 (389)
...+-++.++++|++.+=+ ....+.|-+ -...+.. ...+++-+.|.++||++.. +..-+..|.+ +.|++.+
T Consensus 33 ~~~e~i~~la~~GfdgVE~--~~~dl~P~~--~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~las 104 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTF--HDDDLIPFG--APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFTS 104 (382)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCC--CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCCC
Confidence 4688899999999998854 334455554 1111111 3467788889999999664 3322222333 1267776
Q ss_pred h--HhHHHHHHHHHH---HHHHhCCC
Q 016444 177 P--QMQKEFVHLAKT---CFENFGDR 197 (389)
Q Consensus 177 ~--~~~~~F~~Ya~~---~~~~~gd~ 197 (389)
+ ++.+.=.++.+. +++.+|-+
T Consensus 105 ~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 105 NDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4 333332333332 36677764
Done!