Query 016445
Match_columns 389
No_of_seqs 234 out of 1064
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1386 Nucleoside phosphatase 100.0 4.9E-80 1.1E-84 620.6 27.3 307 74-382 4-335 (501)
2 PF01150 GDA1_CD39: GDA1/CD39 100.0 4.9E-70 1.1E-74 558.7 4.1 299 76-384 5-328 (434)
3 KOG1385 Nucleoside phosphatase 100.0 7.6E-62 1.6E-66 479.8 23.3 279 74-378 62-353 (453)
4 COG5371 Golgi nucleoside dipho 100.0 2.5E-31 5.4E-36 265.5 14.8 285 78-367 119-423 (549)
5 COG5371 Golgi nucleoside dipho 100.0 4.6E-32 9.9E-37 270.8 -1.9 291 78-385 3-327 (549)
6 TIGR03706 exo_poly_only exopol 99.8 4E-20 8.8E-25 181.5 15.7 154 82-256 3-158 (300)
7 COG0248 GppA Exopolyphosphatas 99.8 1E-19 2.3E-24 188.7 15.9 157 81-257 5-163 (492)
8 PRK11031 guanosine pentaphosph 99.8 2E-19 4.4E-24 187.9 16.7 158 79-256 6-165 (496)
9 PRK10854 exopolyphosphatase; P 99.8 2.5E-19 5.3E-24 188.0 16.9 162 75-257 8-171 (513)
10 PF02541 Ppx-GppA: Ppx/GppA ph 99.6 7.9E-15 1.7E-19 142.7 10.6 129 94-240 1-131 (285)
11 PRK15080 ethanolamine utilizat 98.1 2.2E-05 4.7E-10 76.3 9.8 131 76-240 21-154 (267)
12 TIGR02529 EutJ ethanolamine ut 96.2 0.025 5.4E-07 54.0 9.1 155 84-273 2-158 (239)
13 PRK09472 ftsA cell division pr 95.8 0.11 2.4E-06 53.6 12.5 63 79-143 8-72 (420)
14 TIGR01174 ftsA cell division p 94.9 0.35 7.6E-06 48.9 12.2 61 81-144 2-65 (371)
15 CHL00094 dnaK heat shock prote 94.3 2.2 4.9E-05 46.3 17.4 19 221-239 187-205 (621)
16 PRK10719 eutA reactivating fac 94.3 0.75 1.6E-05 48.3 12.9 161 79-257 6-180 (475)
17 PRK05183 hscA chaperone protei 94.1 3 6.5E-05 45.4 18.0 41 191-239 179-219 (616)
18 PRK13929 rod-share determining 93.9 2.4 5.3E-05 42.3 15.7 97 124-240 73-169 (335)
19 PRK13410 molecular chaperone D 93.9 2.9 6.3E-05 46.0 17.4 41 191-239 165-205 (668)
20 COG0849 ftsA Cell division ATP 93.8 0.24 5.2E-06 51.4 8.4 62 80-144 7-71 (418)
21 smart00268 ACTIN Actin. ACTIN 93.8 0.44 9.6E-06 47.9 10.1 37 221-257 143-179 (373)
22 PF06277 EutA: Ethanolamine ut 93.8 0.98 2.1E-05 47.4 12.7 158 80-256 4-176 (473)
23 KOG2517 Ribulose kinase and re 93.7 0.27 5.8E-06 52.1 8.6 86 78-163 5-90 (516)
24 cd00012 ACTIN Actin; An ubiqui 93.7 0.82 1.8E-05 46.0 11.9 37 221-257 143-179 (371)
25 PRK13411 molecular chaperone D 93.5 4.1 8.9E-05 44.7 17.6 20 220-239 185-204 (653)
26 PF11104 PilM_2: Type IV pilus 93.4 0.8 1.7E-05 45.8 11.1 65 170-241 135-200 (340)
27 PF00370 FGGY_N: FGGY family o 93.2 0.34 7.3E-06 45.8 7.7 60 80-143 1-63 (245)
28 TIGR02350 prok_dnaK chaperone 93.1 4.1 8.9E-05 43.9 16.8 20 220-239 182-201 (595)
29 TIGR01991 HscA Fe-S protein as 93.1 4.4 9.4E-05 44.0 16.9 40 192-239 160-199 (599)
30 PTZ00400 DnaK-type molecular c 92.7 3.7 7.9E-05 45.2 15.8 41 191-239 204-244 (663)
31 PRK00290 dnaK molecular chaper 92.6 5.5 0.00012 43.3 17.0 41 192-240 164-204 (627)
32 PLN03184 chloroplast Hsp70; Pr 92.5 7.3 0.00016 42.9 17.8 20 220-239 223-242 (673)
33 TIGR01175 pilM type IV pilus a 92.2 5.7 0.00012 39.4 15.3 32 223-256 190-221 (348)
34 PF00022 Actin: Actin; InterP 92.0 2 4.3E-05 43.4 11.9 102 130-255 74-176 (393)
35 PF06723 MreB_Mbl: MreB/Mbl pr 91.9 7.6 0.00016 39.1 15.7 95 124-240 70-164 (326)
36 PRK01433 hscA chaperone protei 91.8 11 0.00025 40.9 18.1 41 191-239 171-211 (595)
37 TIGR00241 CoA_E_activ CoA-subs 91.5 2.5 5.4E-05 40.3 11.4 110 80-240 1-110 (248)
38 PRK13930 rod shape-determining 90.2 12 0.00026 36.9 15.3 20 222-241 153-172 (335)
39 PTZ00186 heat shock 70 kDa pre 89.6 18 0.00038 39.9 17.2 40 192-239 191-230 (657)
40 PRK13927 rod shape-determining 89.5 3.7 8E-05 40.6 11.1 19 222-240 149-167 (334)
41 PTZ00281 actin; Provisional 89.3 5.7 0.00012 40.4 12.4 37 221-257 149-185 (376)
42 PTZ00004 actin-2; Provisional 88.9 5.7 0.00012 40.3 12.1 38 221-258 149-186 (378)
43 COG4972 PilM Tfp pilus assembl 87.9 4.9 0.00011 40.5 10.4 49 192-242 165-214 (354)
44 PTZ00452 actin; Provisional 87.2 12 0.00026 38.1 13.2 38 221-258 148-185 (375)
45 PTZ00466 actin-like protein; P 86.7 7 0.00015 39.9 11.2 105 130-258 87-191 (380)
46 PF00012 HSP70: Hsp70 protein; 83.1 9.2 0.0002 40.9 10.6 90 129-239 117-206 (602)
47 COG1070 XylB Sugar (pentulose 78.7 8 0.00017 40.9 8.2 63 77-142 2-67 (502)
48 PTZ00280 Actin-related protein 78.7 23 0.0005 36.4 11.4 38 221-258 160-197 (414)
49 PRK13928 rod shape-determining 77.5 50 0.0011 32.8 13.1 20 222-241 148-167 (336)
50 PRK04123 ribulokinase; Provisi 74.3 12 0.00025 40.0 8.1 23 79-101 3-25 (548)
51 PTZ00009 heat shock 70 kDa pro 74.2 48 0.001 36.4 12.9 90 130-239 123-212 (653)
52 PRK10939 autoinducer-2 (AI-2) 74.1 11 0.00024 39.9 7.8 21 79-99 3-23 (520)
53 TIGR01234 L-ribulokinase L-rib 73.5 11 0.00024 40.1 7.7 21 80-100 2-22 (536)
54 COG2971 Predicted N-acetylgluc 73.5 8.2 0.00018 38.4 6.1 57 77-141 3-60 (301)
55 PLN02295 glycerol kinase 71.0 14 0.0003 39.1 7.7 59 80-142 1-62 (512)
56 PF13941 MutL: MutL protein 70.4 14 0.0003 39.0 7.3 74 82-163 3-79 (457)
57 COG1924 Activator of 2-hydroxy 69.8 29 0.00062 35.7 9.1 116 77-240 133-248 (396)
58 PRK10331 L-fuculokinase; Provi 68.9 18 0.00039 37.8 7.8 58 80-141 3-65 (470)
59 smart00842 FtsA Cell division 68.8 28 0.0006 31.5 8.2 60 82-144 2-64 (187)
60 PF01869 BcrAD_BadFG: BadF/Bad 68.0 7.5 0.00016 37.3 4.5 72 83-163 2-74 (271)
61 PTZ00294 glycerol kinase-like 68.0 20 0.00044 37.8 8.1 59 79-141 2-63 (504)
62 TIGR02628 fuculo_kin_coli L-fu 67.8 16 0.00035 38.1 7.3 58 80-141 2-64 (465)
63 PRK13917 plasmid segregation p 66.4 90 0.002 31.4 12.0 47 221-282 185-231 (344)
64 PRK11678 putative chaperone; P 65.8 1.5E+02 0.0032 31.2 13.8 128 129-278 131-260 (450)
65 TIGR03192 benz_CoA_bzdQ benzoy 65.6 87 0.0019 31.1 11.4 110 79-238 32-142 (293)
66 PF08841 DDR: Diol dehydratase 63.8 13 0.00029 36.8 5.2 102 158-279 86-190 (332)
67 PF14574 DUF4445: Domain of un 63.2 10 0.00022 39.4 4.6 24 79-102 1-24 (412)
68 TIGR01314 gntK_FGGY gluconate 62.2 25 0.00055 37.0 7.5 59 80-142 1-62 (505)
69 PF01708 Gemini_mov: Geminivir 62.2 15 0.00032 30.1 4.3 11 14-24 1-11 (91)
70 PRK15027 xylulokinase; Provisi 62.0 28 0.0006 36.5 7.7 58 81-142 2-62 (484)
71 TIGR01311 glycerol_kin glycero 59.6 26 0.00057 36.8 7.1 59 80-142 2-63 (493)
72 COG0443 DnaK Molecular chapero 58.9 1.4E+02 0.003 32.5 12.4 94 125-240 97-191 (579)
73 TIGR02627 rhamnulo_kin rhamnul 57.3 25 0.00054 36.5 6.3 59 82-141 1-63 (454)
74 PF14450 FtsA: Cell division p 56.8 12 0.00026 31.6 3.3 60 81-142 1-62 (120)
75 TIGR03286 methan_mark_15 putat 55.6 86 0.0019 32.6 9.7 115 79-238 144-258 (404)
76 TIGR01315 5C_CHO_kinase FGGY-f 53.3 41 0.00088 35.9 7.3 57 81-141 2-61 (541)
77 COG4820 EutJ Ethanolamine util 52.5 32 0.0007 32.7 5.5 61 207-275 132-192 (277)
78 PRK00047 glpK glycerol kinase; 52.4 43 0.00092 35.2 7.2 58 79-140 5-65 (498)
79 TIGR00904 mreB cell shape dete 51.6 95 0.0021 30.7 9.2 20 221-240 150-169 (333)
80 TIGR02261 benz_CoA_red_D benzo 50.7 1.9E+02 0.0042 28.2 10.8 111 80-238 2-114 (262)
81 COG0554 GlpK Glycerol kinase [ 46.8 64 0.0014 34.3 7.2 61 78-141 4-66 (499)
82 COG4819 EutA Ethanolamine util 44.8 2.8E+02 0.0062 28.5 11.0 141 80-242 6-166 (473)
83 PTZ00288 glucokinase 1; Provis 42.1 1.3E+02 0.0029 31.2 8.7 63 76-144 23-86 (405)
84 TIGR00555 panK_eukar pantothen 41.8 2.9E+02 0.0064 27.2 10.7 41 198-239 78-118 (279)
85 COG3894 Uncharacterized metal- 40.8 29 0.00063 37.0 3.6 29 74-102 159-187 (614)
86 TIGR03123 one_C_unchar_1 proba 40.3 1.2E+02 0.0026 30.4 7.9 85 151-241 53-148 (318)
87 COG1077 MreB Actin-like ATPase 38.9 1.2E+02 0.0027 30.6 7.5 92 130-240 79-172 (342)
88 PRK03011 butyrate kinase; Prov 36.3 47 0.001 33.8 4.4 58 80-141 3-60 (358)
89 PRK09213 pur operon repressor; 35.1 60 0.0013 31.9 4.7 67 118-184 26-95 (271)
90 PHA02819 hypothetical protein; 34.8 58 0.0013 25.5 3.6 9 33-41 36-44 (71)
91 COG1069 AraB Ribulose kinase [ 33.2 1.3E+02 0.0028 32.4 7.1 81 78-161 2-85 (544)
92 TIGR01312 XylB D-xylulose kina 29.8 1.4E+02 0.0031 30.8 6.8 56 82-141 1-59 (481)
93 PF10726 DUF2518: Protein of f 29.4 73 0.0016 28.4 3.8 18 72-89 64-81 (145)
94 PLN03160 uncharacterized prote 29.1 82 0.0018 29.7 4.4 18 39-56 35-52 (219)
95 PF07423 DUF1510: Protein of u 28.1 30 0.00064 32.9 1.2 21 35-56 7-27 (217)
96 PF06406 StbA: StbA protein; 26.1 2.5E+02 0.0053 27.8 7.4 71 191-283 142-212 (318)
97 PF08777 RRM_3: RNA binding mo 26.0 38 0.00083 28.2 1.4 43 160-203 41-85 (105)
98 COG5277 Actin and related prot 23.3 4.1E+02 0.009 27.9 8.7 86 152-256 106-191 (444)
99 TIGR01743 purR_Bsub pur operon 22.8 1.2E+02 0.0026 29.7 4.4 67 118-184 24-93 (268)
100 PF01968 Hydantoinase_A: Hydan 22.5 1.1E+02 0.0024 29.9 4.2 22 220-241 76-97 (290)
101 PHA02692 hypothetical protein; 22.3 1.3E+02 0.0028 23.5 3.5 6 36-41 38-43 (70)
102 PF09874 DUF2101: Predicted me 21.0 1.9E+02 0.0041 27.3 5.0 21 76-96 142-162 (206)
103 TIGR02259 benz_CoA_red_A benzo 20.7 78 0.0017 33.1 2.7 21 79-99 2-22 (432)
No 1
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.9e-80 Score=620.57 Aligned_cols=307 Identities=39% Similarity=0.699 Sum_probs=268.0
Q ss_pred CCCCceEEEEEEeCCCceEEEEEEEeC--CCCceee---ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 016445 74 PPSSVKYGVLLDGGSTGTRIHVFSYDT--ETNHFDF---DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFW 148 (389)
Q Consensus 74 ~~~~~~y~vVIDaGSsgtRl~Vy~~~~--~~~~l~~---~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp~~~~ 148 (389)
.+...+|+|||||||+|||||||.|.. ++|.+++ .....|++||||+|+++|++|..+|.+|+++|+++||+++|
T Consensus 4 ~~~~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~IPk~~h 83 (501)
T KOG1386|consen 4 EPPNLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHIPKEKH 83 (501)
T ss_pred CCCcceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhCCHhhc
Confidence 345789999999999999999999998 3443432 23457899999999999999999999999999999999999
Q ss_pred CCceEEEEEehhhcccchhcHHHHHHHHHHHhh-ccCccccCCceEEcCCccchhhhHHHHHHhcccCCC----C-CCCc
Q 016445 149 ADTEIRLMATAGLRLVDVVVQDKILDSCRRVLR-VSGFRFADDWATVITGSDEGVYAWIVANYALGTLGG----D-PSET 222 (389)
Q Consensus 149 ~~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~-~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~----~-~~~t 222 (389)
+.|||+++||||||+||..+|++||+.+++.++ .++|+|+++|||||||+|||+|+||++||++|+|+. + +.+|
T Consensus 84 ~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T 163 (501)
T KOG1386|consen 84 KETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKET 163 (501)
T ss_pred CCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHhccccCcccCCcce
Confidence 999999999999999999999999999999998 689999999999999999999999999999999987 3 5689
Q ss_pred eeEEeeCCCeeEEEeecC---CCCCccceeeEEec---ceeEEEEEeecccccHHHHHHHHHHHhhcCCcchh--hhhcc
Q 016445 223 TGIIELGGASVQVTFVSD---EPLPQEFSRTLKFG---NVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTA--AESLQ 294 (389)
Q Consensus 223 ~giiDlGGaStQIaf~~~---~~~~~~~~~~~~l~---~~~~~lYs~SfLg~G~~~ar~~~~~~l~~~~~~~~--~~~~~ 294 (389)
+|+||||||||||||++. +..+++...++.+| .+.|+||+|||||||+|+|++|++.+|.+...++. +....
T Consensus 164 ~G~lDlGGAS~QItFe~~~~~e~~~~~~~~~i~~G~~~~~~Y~ly~~SfLgyG~N~A~~ry~~~Ll~~~~n~n~~~~~~~ 243 (501)
T KOG1386|consen 164 FGALDLGGASTQITFEPPNQQEEVPKENLQTINYGNDNLVKYRLYVHSFLGYGANEALDRYLAMLLEKLPNKNGLTGLTG 243 (501)
T ss_pred eeeEecCCceeEEEEecCccccccchhhhhheecCCCCceEEEEEEEeecccchhHHHHHHHHHHHHhcccccccccccc
Confidence 999999999999999988 55677888888888 26799999999999999999999999887544322 33445
Q ss_pred CCccCCCCCCCCceeeeecC---CCccccc---cceeeeccCCChHhHHHHHHHhhccCCCCCCCCCCCCCCccCCCCCC
Q 016445 295 KGTYIDPCSPKGYLHHVESS---PGSLAAK---IDLSTLQAGGNFSECRSAALTLLQNGKEKCSYKSCYLGSTFMPKLRG 368 (389)
Q Consensus 295 ~~~~~~PC~p~Gy~~~~~~~---~~~~~~~---~~~~~~~Gtgnf~~C~~~i~~ll~~~~~~C~~~~Cs~~g~~~P~l~g 368 (389)
+..+.|||+|+||...++.. ++...++ .+.+.+.|+|||++|++++..+|+. ++|.+++|+|||+|||++++
T Consensus 244 ~~~~~DPC~p~Gy~~~~~~~~~~~~~~~e~~~~~~~~~~~GtGn~~~C~~~v~~ll~~--~~C~~~~Csf~gv~~P~i~f 321 (501)
T KOG1386|consen 244 DNPLTDPCLPRGYNYDVNLSDVYSSPCPEESKNGQSIELQGTGNWSQCRSAVLPLLNF--KSCPYQPCSFNGVFQPPIQF 321 (501)
T ss_pred CcccCCCCCCCCcceeeeeccccccccccccCCCceEEEecCCCHHHHHHHHHHhcCC--CCCCCcccccCCEeCCCcCc
Confidence 56789999999999998722 2222222 2337789999999999999999985 89999999999999999999
Q ss_pred ceeEeeeeEEeeec
Q 016445 369 KFLATENFFHTSKV 382 (389)
Q Consensus 369 ~F~a~s~fy~t~~f 382 (389)
+|+|||+|||+.+.
T Consensus 322 ~f~~fSef~y~t~~ 335 (501)
T KOG1386|consen 322 EFYGFSEFFYTTND 335 (501)
T ss_pred eeEEEEeeeeehhh
Confidence 99999999997654
No 2
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=100.00 E-value=4.9e-70 Score=558.69 Aligned_cols=299 Identities=39% Similarity=0.681 Sum_probs=248.0
Q ss_pred CCceEEEEEEeCCCceEEEEEEEeCC-C---Ccee-e---ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCC
Q 016445 76 SSVKYGVLLDGGSTGTRIHVFSYDTE-T---NHFD-F---DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAF 147 (389)
Q Consensus 76 ~~~~y~vVIDaGSsgtRl~Vy~~~~~-~---~~l~-~---~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp~~~ 147 (389)
.+.+|+|||||||||||+|||+|... . +.+. . .....+++|||++|+++|+++.++|++|+++|+++||.++
T Consensus 5 ~~~~y~vviDAGSsgsR~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~pgls~~~~~~~~~~~~l~~ll~~a~~~ip~~~ 84 (434)
T PF01150_consen 5 ESRKYGVVIDAGSSGSRVHVYKWRCRDNNSLPVVPLVEQSKPVFKKVEPGLSSFADNPEKAAESLQPLLDFAKSVIPKSQ 84 (434)
T ss_dssp EEEEEEEEEEEESSEEEEEEEEEEEEECCGCEEEEEEEEBEEHCCHHCCHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEcCCCCceEEEEEEecCCCccCCccccceeccchhhcccchHHHhCCChHHHHHHHHHHHHHHHhhCCHHH
Confidence 45789999999999999999999762 1 1111 1 1235788999999999999999999999999999999999
Q ss_pred CCCceEEEEEehhhcccchhcHHHHHHHHHHHhh-ccCccccCCceEEcCCccchhhhHHHHHHhcccCCCC-----CCC
Q 016445 148 WADTEIRLMATAGLRLVDVVVQDKILDSCRRVLR-VSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGD-----PSE 221 (389)
Q Consensus 148 ~~~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~-~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~-----~~~ 221 (389)
|..|||+|.||||||+|+.+++++||+.|++.++ .++|.|.++|||||||+|||+|+|++|||++|+|..+ ..+
T Consensus 85 ~~~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~ 164 (434)
T PF01150_consen 85 HSSTPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSN 164 (434)
T ss_dssp SCHEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS
T ss_pred hCCeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCc
Confidence 9999999999999999999999999999999997 4899999999999999999999999999999999876 468
Q ss_pred ceeEEeeCCCeeEEEeecCCC------CCc--cceeeEEecceeEEEEEeecccccHHHHHHHHHHHhhcCCcchhhhhc
Q 016445 222 TTGIIELGGASVQVTFVSDEP------LPQ--EFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTAAESL 293 (389)
Q Consensus 222 t~giiDlGGaStQIaf~~~~~------~~~--~~~~~~~l~~~~~~lYs~SfLg~G~~~ar~~~~~~l~~~~~~~~~~~~ 293 (389)
|+|+||||||||||||.+++. ... .+.+.+++++++|+||+|||||||+++||+++++.+.+... ..
T Consensus 165 t~g~lDlGGaStQIaf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vys~SyLgyG~~~Ar~~~l~~l~~~~~-----~~ 239 (434)
T PF01150_consen 165 TVGALDLGGASTQIAFEPSEGTFSNSSLEDINSYIRRLKLGGKNYDVYSHSYLGYGLNEARKRYLASLVSNSS-----KK 239 (434)
T ss_dssp -EEEEEE-SSEEEEEEEETTTTTSCTTSSGCE-GCCCCCCTTCCCEEEEEEEETCSHHHHHHHHHHHHTTSTT-----TE
T ss_pred eEEEEecCCcceeeeeccCcccccccccccccchheeeccccceeEEEEeecccccHHHHHHHHHHHHhhhcc-----cc
Confidence 999999999999999999821 111 24567899999999999999999999999999999887421 11
Q ss_pred cCCccCCCCCCCCceeeeecCCCccccccceeeeccCCChHhHHHHHHHhhccCCCCCCCCCCCCCCccCCC---CCCce
Q 016445 294 QKGTYIDPCSPKGYLHHVESSPGSLAAKIDLSTLQAGGNFSECRSAALTLLQNGKEKCSYKSCYLGSTFMPK---LRGKF 370 (389)
Q Consensus 294 ~~~~~~~PC~p~Gy~~~~~~~~~~~~~~~~~~~~~Gtgnf~~C~~~i~~ll~~~~~~C~~~~Cs~~g~~~P~---l~g~F 370 (389)
....+.|||+|+||...++... .....+.+.|+|||++|+++++++|+. +..|.+++|+|+++++|+ ..+.|
T Consensus 240 ~~~~i~~PC~p~G~~~~~~~~~----~~~~~~~~~Gtg~~~~C~~~i~~~l~~-~~~c~~~~C~~~~v~~p~~~~~~~~f 314 (434)
T PF01150_consen 240 SSGVIPNPCLPKGYNQSWTYSD----VEYDVITLTGTGDFEKCRELIRKLLNK-NANCEYSPCSFNGVYQPSIPSGNGFF 314 (434)
T ss_dssp ETCEEEETTS-BT-EEESCSCH----EESSCCEBTTHHHHHHCCTTSHHHHT---SHHHHHHHHTTTTBTTSHHHHHHSE
T ss_pred cccccCCccccCCccceEEecc----cccccccCCCCCchHHHHHHHHHHhhc-cccCCCCCCccCCccCCcccccccce
Confidence 2457899999999998875211 011235789999999999999999986 578999999999999999 46789
Q ss_pred eEeeeeEEeeeccc
Q 016445 371 LATENFFHTSKVSF 384 (389)
Q Consensus 371 ~a~s~fy~t~~f~~ 384 (389)
+++|.||+++.|+.
T Consensus 315 ~a~s~fy~~~~~l~ 328 (434)
T PF01150_consen 315 YAFSYFYYTADFLG 328 (434)
T ss_dssp TTEEEEEEHHHHHH
T ss_pred eEEEEEEEeehhcC
Confidence 99999999988764
No 3
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.6e-62 Score=479.78 Aligned_cols=279 Identities=35% Similarity=0.615 Sum_probs=241.6
Q ss_pred CCCCceEEEEEEeCCCceEEEEEEEeCCC----CceeeccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCC
Q 016445 74 PPSSVKYGVLLDGGSTGTRIHVFSYDTET----NHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWA 149 (389)
Q Consensus 74 ~~~~~~y~vVIDaGSsgtRl~Vy~~~~~~----~~l~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp~~~~~ 149 (389)
...+.+|+|||||||||||+|||+|.... |.++ .+....++||||+|+++|++++.+|++|++.|+..||.+.|+
T Consensus 62 s~~~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le-~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~vP~~~~~ 140 (453)
T KOG1385|consen 62 SSIKRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELE-HELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFVPREHWK 140 (453)
T ss_pred CCCceEEEEEEecCCCcceEEEEEeccCCCCCCchhH-HHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhCCHhHhc
Confidence 44568999999999999999999999842 2333 345677899999999999999999999999999999999999
Q ss_pred CceEEEEEehhhcccchhcHHHHHHHHHHHhh-ccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEee
Q 016445 150 DTEIRLMATAGLRLVDVVVQDKILDSCRRVLR-VSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIEL 228 (389)
Q Consensus 150 ~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~-~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDl 228 (389)
+|||.+.||||+|+||...++.||++||+.|+ +++|+..++.|.||+|.|||+|+|+++||++|+|+.+.++|+|++||
T Consensus 141 kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DL 220 (453)
T KOG1385|consen 141 KTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDL 220 (453)
T ss_pred cCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhcccCCCCCCceEEEEc
Confidence 99999999999999999999999999999998 68999888889999999999999999999999999877889999999
Q ss_pred CCCeeEEEeecCCC----CCccceeeEEecceeEEEEEeecccccHHHHHHHHHHHhhcCCcchhhhhccCCccCCCCCC
Q 016445 229 GGASVQVTFVSDEP----LPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTAAESLQKGTYIDPCSP 304 (389)
Q Consensus 229 GGaStQIaf~~~~~----~~~~~~~~~~l~~~~~~lYs~SfLg~G~~~ar~~~~~~l~~~~~~~~~~~~~~~~~~~PC~p 304 (389)
|||||||+|.+... .++.+.+.+.++|++|+||+|||||||+.+||..+++ ...+ .....++.+||+|
T Consensus 221 GGGSTQi~f~p~~e~~~~~~~~y~~~l~~~~~ky~LythSyLg~GL~aAR~~il~-~~e~-------~~~~h~l~spCl~ 292 (453)
T KOG1385|consen 221 GGGSTQITFLPTFEDTLEAPVPYKRELDFFGRKYKLYTHSYLGLGLKAARLAILK-VLEN-------EETTHQLISPCLP 292 (453)
T ss_pred CCceEEEEEecCcccccccCCcceeeeeecCceEEEEEecccchHHHHHHHhhhh-hhcc-------ccccceeeccccC
Confidence 99999999998643 3344888999999999999999999999999999998 3332 1123468899999
Q ss_pred CCceeeeecCCCccccccceeeecc----CCChHhHHHHHHHhhccCCCCCCCCCCCCCCccCCCCCCceeEeeeeEE
Q 016445 305 KGYLHHVESSPGSLAAKIDLSTLQA----GGNFSECRSAALTLLQNGKEKCSYKSCYLGSTFMPKLRGKFLATENFFH 378 (389)
Q Consensus 305 ~Gy~~~~~~~~~~~~~~~~~~~~~G----tgnf~~C~~~i~~ll~~~~~~C~~~~Cs~~g~~~P~l~g~F~a~s~fy~ 378 (389)
.||...|+.. .+.+.+.| ..-+++|+..+..+|.. .|.+.+|.++ ++.+|+||.||.
T Consensus 293 ~~~~~~~~~~-------~~~y~v~~~~s~~~~~E~c~~~~~~~l~~---~~~~~p~~~~-------~~~~y~fSYfyD 353 (453)
T KOG1385|consen 293 PGYAGEWEYG-------GVTYKVSGSQSGASLFEQCRGTIDAVLEG---SCVHRPCEFK-------QSDVYLFSYFYD 353 (453)
T ss_pred cchhhheeec-------ceEEEecCccCccccchhhHHHHHHHHhc---CccccccccC-------CCcEEEEehhhh
Confidence 9999977621 12234444 56789999999999974 7999999998 678999999885
No 4
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=265.55 Aligned_cols=285 Identities=25% Similarity=0.291 Sum_probs=224.7
Q ss_pred ceEEEEEEeCCCceEEEEEEEeCCCC--ceeeccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEE
Q 016445 78 VKYGVLLDGGSTGTRIHVFSYDTETN--HFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRL 155 (389)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~~~~~--~l~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l 155 (389)
.+|..+|||||+|+|++||++.++++ ... ......+.|||++|..++.++..++.++++.|.+.+|.+..+++|+.+
T Consensus 119 ~qYv~~idagstgsr~~iyqfidge~~~~~~-~~~~n~L~~~l~d~d~~t~G~~~s~~~l~qiA~~~~p~e~~r~~pi~~ 197 (549)
T COG5371 119 CQYVKMIDAGSTGSRSNIYQFIDGEIEGQYL-WLNTNYLEPGLSDFDTDTVGFADSGGALLQIAFEFVPSEIRRCMPIIV 197 (549)
T ss_pred hheecccccCCCccceeEEEeecCccCcchh-hhhhhhhcccccccccccHHHHhhccHHHHhhhccCCHHHhhcCcceE
Confidence 58999999999999999999998542 222 245667899999999999999999999999999999998899999999
Q ss_pred EEehhhcccchhcHHHHHHHHHHHhhc-cCccc-cCCceEEcCCccchhhhHHHHHHhcccCCCCC--CCceeEEeeCCC
Q 016445 156 MATAGLRLVDVVVQDKILDSCRRVLRV-SGFRF-ADDWATVITGSDEGVYAWIVANYALGTLGGDP--SETTGIIELGGA 231 (389)
Q Consensus 156 ~ATAGmR~l~~~~~~~il~~vr~~l~~-s~f~f-~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~--~~t~giiDlGGa 231 (389)
.||||+|++.......|+..+|.-|.+ ++|+. ..+.|+||.|.+||.|+|...||++++.+.+. +.|.+++|+|||
T Consensus 198 ~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil~G~~Eg~~a~~~m~~~ls~~g~~~~~~~T~~v~d~gg~ 277 (549)
T COG5371 198 TATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEILNGVDEGNLADPCMNRGLSNDGTDAGTHGTGAVVDCGGG 277 (549)
T ss_pred EEEeeeeecCccchhhHHHHHHHhhccccccceecccceeeccCccccchhhhhhhhhhccccCCCcccCcccceeccCc
Confidence 999999999999999999999999975 45543 34679999999999999999999999987542 467889999999
Q ss_pred eeEEEeecCCC------CCccceeeEEecceeEEEEEeecccccHHHHHHHHHHHhhcCCcchhhhhccCC---ccCCCC
Q 016445 232 SVQVTFVSDEP------LPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTAAESLQKG---TYIDPC 302 (389)
Q Consensus 232 StQIaf~~~~~------~~~~~~~~~~l~~~~~~lYs~SfLg~G~~~ar~~~~~~l~~~~~~~~~~~~~~~---~~~~PC 302 (389)
||||.|.+... ...++...+.+++.+|.+|.+|-++||++.+++........+..++..+-.... .+.|||
T Consensus 278 stqll~~~r~~~~~~~~~DG~h~~~ldf~~e~~k~~g~Se~~Y~andv~~~~~~~~~~nflKsv~el~g~s~t~~l~~~~ 357 (549)
T COG5371 278 STQLLLKPRPCSDIPCLFDGGHKPLLDFANEEYKFYGDSELWYTANDVFKKGGSVAFRNFLKSVDELCGDSWTQILSHKE 357 (549)
T ss_pred ceeeeecCCCCccccccccCccccccccCCccceEEeehhhhhhHHHHHhhccceechhHHHHHHHHhcccchhhhcCcc
Confidence 99999987542 123455667888999999999999999999999877655543222222211222 267999
Q ss_pred CCCCceeeeecCCCccccccce--eeeccCCCh---HhHHHHHHHhhccCCCCCCCCCCCCCCccCCCCC
Q 016445 303 SPKGYLHHVESSPGSLAAKIDL--STLQAGGNF---SECRSAALTLLQNGKEKCSYKSCYLGSTFMPKLR 367 (389)
Q Consensus 303 ~p~Gy~~~~~~~~~~~~~~~~~--~~~~Gtgnf---~~C~~~i~~ll~~~~~~C~~~~Cs~~g~~~P~l~ 367 (389)
+++.-..+.+.+ |. +..+. +...|--+. .+|+.+....|.+ ...|...+|+++||.||++.
T Consensus 358 l~~~i~~~~k~s-~~--eak~~l~il~~G~d~p~~s~qcr~l~~~~L~k-d~~c~spf~S~~gVeq~k~s 423 (549)
T COG5371 358 LGPSIRENLKDS-CF--EAKWVLNILHEGFDNPLESHQCRNLADLILSK-DPACHSPFCSFEGVEQTKLS 423 (549)
T ss_pred cCcccchhhhhh-hh--hhhhheeeeeeccCCcccchhhhhhhhhhhcc-ccccCCCcccccccccccee
Confidence 998766652211 11 11121 223455443 4999999999976 47899999999999999984
No 5
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.6e-32 Score=270.78 Aligned_cols=291 Identities=26% Similarity=0.421 Sum_probs=229.1
Q ss_pred ceEEEEEEeCCCceEEEEEEEeCCC-------C-c--------eeeccceeecCCCCcccCCCcchHH-HHHHHHHHHHH
Q 016445 78 VKYGVLLDGGSTGTRIHVFSYDTET-------N-H--------FDFDLGSMRLNPGLSSYAVNPTNAG-DSLKDLLDFAK 140 (389)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~~~~-------~-~--------l~~~~~~~k~~pGLss~~~~~~~a~-~~l~~Ll~~a~ 140 (389)
.+|++||||||+|+|++||.|+... | . .+...+..|+.||+|+|..+|+.++ ..++++|++|+
T Consensus 3 ~~~~~~~d~~~s~~~v~~~~w~~~t~Ss~~~~~~si~~~~~~~~~~~~w~~k~~~~is~~~~k~~~~~~~~lkelLdfa~ 82 (549)
T COG5371 3 PRFGIVIDAGSSGSRVHVFKWDQDTESSLHATPQSILQSVTHIHQEPDWTFKLNPGISSFEKKPQDAEKSHLKELLDFAK 82 (549)
T ss_pred chhhhhhhhhcccceEEEEEeccCcccccCCCCccccccccCcccCCccccccCCcccccCCCccccccccccchhhhhh
Confidence 4789999999999999999996511 1 0 1113567889999999999999887 58999999999
Q ss_pred HhCCCCCCCCceEEEEEehhhcccchhcHHHHHHHHHHHhhc-cCccccC--CceEEcCCccchhhhHHHHHHhcccCCC
Q 016445 141 RKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRV-SGFRFAD--DWATVITGSDEGVYAWIVANYALGTLGG 217 (389)
Q Consensus 141 ~~vp~~~~~~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~~-s~f~f~~--~~i~VIsG~eEg~y~WlavNy~lg~l~~ 217 (389)
..||.+.|..+|+++.||||||+|+..-|.-+++.+++.+.. .-+...+ .-+++|+|+-|+.|+|++.||+.+.+..
T Consensus 83 ~~IP~k~~~~~P~la~atA~~~lls~Dsq~~s~~~~~qYv~~idagstgsr~~iyqfidge~~~~~~~~~~n~L~~~l~d 162 (549)
T COG5371 83 NIIPEKTMPSLPVLAGATAAMRLLSQDSQPCSLIHLCQYVKMIDAGSTGSRSNIYQFIDGEIEGQYLWLNTNYLEPGLSD 162 (549)
T ss_pred ccCchhhccccceeccccccccccCCCCCchhhHhhhheecccccCCCccceeEEEeecCccCcchhhhhhhhhcccccc
Confidence 999999999999999999999999988888899886665532 1122111 2479999999999999999999998876
Q ss_pred CCCCceeEEeeCCCeeEEEeecCCC-----CCcccee--eEEecc--eeEEEEEeecccccHHHHHHHHHHHhhcCCcch
Q 016445 218 DPSETTGIIELGGASVQVTFVSDEP-----LPQEFSR--TLKFGN--VTYNLYSHSFLHFGQNVAFETLRELLSSGDFNT 288 (389)
Q Consensus 218 ~~~~t~giiDlGGaStQIaf~~~~~-----~~~~~~~--~~~l~~--~~~~lYs~SfLg~G~~~ar~~~~~~l~~~~~~~ 288 (389)
....|+|+.|+||+++||||+.... .|....- -+++.| +.+.|+...++|||.|+|+.+++..+++-.
T Consensus 163 ~d~~t~G~~~s~~~l~qiA~~~~p~e~~r~~pi~~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil--- 239 (549)
T COG5371 163 FDTDTVGFADSGGALLQIAFEFVPSEIRRCMPIIVTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEIL--- 239 (549)
T ss_pred cccccHHHHhhccHHHHhhhccCCHHHhhcCcceEEEEeeeeecCccchhhHHHHHHHhhccccccceecccceeec---
Confidence 5567899999999999999975422 2222211 233333 478999999999999999999986665421
Q ss_pred hhhhccCCccCCCCCCCCceeeeecCCCccccccceeeeccCCChHhHHHHHHHhhccCCCCCCCCCCCCCCccCCCCC-
Q 016445 289 AAESLQKGTYIDPCSPKGYLHHVESSPGSLAAKIDLSTLQAGGNFSECRSAALTLLQNGKEKCSYKSCYLGSTFMPKLR- 367 (389)
Q Consensus 289 ~~~~~~~~~~~~PC~p~Gy~~~~~~~~~~~~~~~~~~~~~Gtgnf~~C~~~i~~ll~~~~~~C~~~~Cs~~g~~~P~l~- 367 (389)
.....+.+.+||++.|-....+ ....+|||+..+|.....+++.. ..+|...+|.|+|...|.+.
T Consensus 240 --~G~~Eg~~a~~~m~~~ls~~g~-----------~~~~~~T~~v~d~gg~stqll~~-~r~~~~~~~~~DG~h~~~ldf 305 (549)
T COG5371 240 --NGVDEGNLADPCMNRGLSNDGT-----------DAGTHGTGAVVDCGGGSTQLLLK-PRPCSDIPCLFDGGHKPLLDF 305 (549)
T ss_pred --cCccccchhhhhhhhhhccccC-----------CCcccCcccceeccCcceeeeec-CCCCccccccccCcccccccc
Confidence 1223456789999998765422 12348999999999999999876 47999999999999999984
Q ss_pred ----CceeEeeeeEEeeecccc
Q 016445 368 ----GKFLATENFFHTSKVSFS 385 (389)
Q Consensus 368 ----g~F~a~s~fy~t~~f~~~ 385 (389)
-+|+++|++|||.+--++
T Consensus 306 ~~e~~k~~g~Se~~Y~andv~~ 327 (549)
T COG5371 306 ANEEYKFYGDSELWYTANDVFK 327 (549)
T ss_pred CCccceEEeehhhhhhHHHHHh
Confidence 389999999999875544
No 6
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=99.84 E-value=4e-20 Score=181.54 Aligned_cols=154 Identities=23% Similarity=0.273 Sum_probs=117.0
Q ss_pred EEEEeCCCceEEEEEEEeCCC-CceeeccceeecCCCCcccCC-CcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEEeh
Q 016445 82 VLLDGGSTGTRIHVFSYDTET-NHFDFDLGSMRLNPGLSSYAV-NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATA 159 (389)
Q Consensus 82 vVIDaGSsgtRl~Vy~~~~~~-~~l~~~~~~~k~~pGLss~~~-~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATA 159 (389)
+|||+|||+.||.||++..+. ..++......++..|+..... .++.+.+.+..|.++.+.. +.++.+.+.++||+
T Consensus 3 AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~---~~~~v~~i~~vaTs 79 (300)
T TIGR03706 3 AAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELL---RGFPVDEVRAVATA 79 (300)
T ss_pred EEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHH---HhCCCCeEEEEEcH
Confidence 699999999999999986432 122222345677777755333 4666677777776666655 66788999999999
Q ss_pred hhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeec
Q 016445 160 GLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 160 GmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~ 239 (389)
+||.+ .|+++|++.|+..+ |+. ++||||+|||+|.|+++...+.. ....++||||||||+++..
T Consensus 80 a~R~A--~N~~~~~~~i~~~t---gi~-----i~visg~eEa~l~~~gv~~~~~~------~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 80 ALRDA--KNGPEFLREAEAIL---GLP-----IEVISGEEEARLIYLGVAHTLPI------ADGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHcC--CCHHHHHHHHHHHH---CCC-----eEEeChHHHHHHHHHHHHhCCCC------CCcEEEEecCCeEEEEEec
Confidence 99995 89999999999876 785 99999999999999999876531 2358999999999999986
Q ss_pred CCCCCccceeeEEecce
Q 016445 240 DEPLPQEFSRTLKFGNV 256 (389)
Q Consensus 240 ~~~~~~~~~~~~~l~~~ 256 (389)
++. ..+...+.+|..
T Consensus 144 ~~~--~~~~~Sl~lG~v 158 (300)
T TIGR03706 144 DFE--PGEGVSLPLGCV 158 (300)
T ss_pred CCC--EeEEEEEccceE
Confidence 543 234455666654
No 7
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.82 E-value=1e-19 Score=188.72 Aligned_cols=157 Identities=22% Similarity=0.273 Sum_probs=124.1
Q ss_pred EEEEEeCCCceEEEEEEEeCCCC-ceeeccceeecCCCCcccCC-CcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEEe
Q 016445 81 GVLLDGGSTGTRIHVFSYDTETN-HFDFDLGSMRLNPGLSSYAV-NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMAT 158 (389)
Q Consensus 81 ~vVIDaGSsgtRl~Vy~~~~~~~-~l~~~~~~~k~~pGLss~~~-~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~AT 158 (389)
.++||+|||+.||.|++...+.+ .+......+++..||.+... +++++.+.+..|-.|++.. +.++...|+++||
T Consensus 5 ~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~---~~~~~~~v~~vAT 81 (492)
T COG0248 5 VAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELL---DGFGAEEVRVVAT 81 (492)
T ss_pred EEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHH---hhCCCCEEEEehh
Confidence 46999999999999999875332 33223456788999988766 4556667777776666665 6677889999999
Q ss_pred hhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEee
Q 016445 159 AGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFV 238 (389)
Q Consensus 159 AGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~ 238 (389)
+++|.+ .|+++|++.+++.+ |++ |+||||+|||+|+++||-..++. .....++||||||||+++.
T Consensus 82 sA~R~A--~N~~eFl~rv~~~~---G~~-----ievIsGeeEArl~~lGv~~~~~~-----~~~~lv~DIGGGStEl~~g 146 (492)
T COG0248 82 SALRDA--PNGDEFLARVEKEL---GLP-----IEVISGEEEARLIYLGVASTLPR-----KGDGLVIDIGGGSTELVLG 146 (492)
T ss_pred HHHHcC--CCHHHHHHHHHHHh---CCc-----eEEeccHHHHHHHHHHHHhcCCC-----CCCEEEEEecCCeEEEEEe
Confidence 999996 79999999999988 886 99999999999999999988763 2456799999999999998
Q ss_pred cCCCCCccceeeEEeccee
Q 016445 239 SDEPLPQEFSRTLKFGNVT 257 (389)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~ 257 (389)
.+.. .....++.+|..+
T Consensus 147 ~~~~--~~~~~Sl~~G~v~ 163 (492)
T COG0248 147 DNFE--IGLLISLPLGCVR 163 (492)
T ss_pred cCCc--cceeEEeecceEE
Confidence 7543 3444566666553
No 8
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=99.82 E-value=2e-19 Score=187.89 Aligned_cols=158 Identities=24% Similarity=0.278 Sum_probs=120.5
Q ss_pred eEEEEEEeCCCceEEEEEEEeCCCC-ceeeccceeecCCCCcccCC-CcchHHHHHHHHHHHHHHhCCCCCCCCceEEEE
Q 016445 79 KYGVLLDGGSTGTRIHVFSYDTETN-HFDFDLGSMRLNPGLSSYAV-NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLM 156 (389)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~~~-~l~~~~~~~k~~pGLss~~~-~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ 156 (389)
.+.+|||+|||+.||.||+...+.. .++......+++.|+..... .++.+.+.+..|-+|++.. +.++.+.+.++
T Consensus 6 ~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~---~~~~v~~i~~v 82 (496)
T PRK11031 6 SLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERL---QDIPPSQIRVV 82 (496)
T ss_pred CEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHH---HhCCCCeEEEE
Confidence 4457999999999999999765332 23323456778778765433 5666777777776666655 56788999999
Q ss_pred EehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEE
Q 016445 157 ATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVT 236 (389)
Q Consensus 157 ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIa 236 (389)
||+++|.+ +|+++|++.|++.+ |++ |+||||+|||.|.++||-..+. ..+...++||||||||++
T Consensus 83 ATsAvReA--~N~~~fl~~i~~~t---Gl~-----ievIsG~eEA~l~~~gv~~~l~-----~~~~~lviDIGGGStEl~ 147 (496)
T PRK11031 83 ATATLRLA--VNADEFLAKAQEIL---GCP-----VQVISGEEEARLIYQGVAHTTG-----GADQRLVVDIGGASTELV 147 (496)
T ss_pred EeHHHHcC--cCHHHHHHHHHHHH---CCC-----eEEeCHHHHHHHHHHhhhhccC-----CCCCEEEEEecCCeeeEE
Confidence 99999996 89999999999976 886 9999999999999999987653 123467999999999999
Q ss_pred eecCCCCCccceeeEEecce
Q 016445 237 FVSDEPLPQEFSRTLKFGNV 256 (389)
Q Consensus 237 f~~~~~~~~~~~~~~~l~~~ 256 (389)
+..+.. ..+..++.+|..
T Consensus 148 ~~~~~~--~~~~~Sl~lG~v 165 (496)
T PRK11031 148 TGTGAQ--ATSLFSLSMGCV 165 (496)
T ss_pred EecCCc--eeeeeEEeccch
Confidence 986543 234445555544
No 9
>PRK10854 exopolyphosphatase; Provisional
Probab=99.82 E-value=2.5e-19 Score=187.99 Aligned_cols=162 Identities=17% Similarity=0.242 Sum_probs=121.4
Q ss_pred CCCceEEEEEEeCCCceEEEEEEEeCCCC-ceeeccceeecCCCCcccCC-CcchHHHHHHHHHHHHHHhCCCCCCCCce
Q 016445 75 PSSVKYGVLLDGGSTGTRIHVFSYDTETN-HFDFDLGSMRLNPGLSSYAV-NPTNAGDSLKDLLDFAKRKVPPAFWADTE 152 (389)
Q Consensus 75 ~~~~~y~vVIDaGSsgtRl~Vy~~~~~~~-~l~~~~~~~k~~pGLss~~~-~~~~a~~~l~~Ll~~a~~~vp~~~~~~tp 152 (389)
|.+..+ +|||+|||++||.||+...+.. .++......+++.|+..... +++.+.+.+..|-+|.+.. +.++.+.
T Consensus 8 ~~~~~~-A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~---~~~~v~~ 83 (513)
T PRK10854 8 PRPQEF-AAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERL---QGFSPAN 83 (513)
T ss_pred CCCCEE-EEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHH---HhCCCCe
Confidence 334444 6999999999999999875432 23223455677788765443 4666677777776665554 5677889
Q ss_pred EEEEEehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCe
Q 016445 153 IRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGAS 232 (389)
Q Consensus 153 v~l~ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaS 232 (389)
+.++||++||.+ +|+++|++.|++.+ |++ |+||||+|||.|.++||-+.+.. .+...++||||||
T Consensus 84 v~~vATsAlReA--~N~~~fl~~i~~~t---Gl~-----i~vIsG~EEA~l~~~gv~~~l~~-----~~~~lvvDIGGGS 148 (513)
T PRK10854 84 VCIVGTHTLRQA--LNATDFLKRAEKVI---PYP-----IEIISGNEEARLIFMGVEHTQPE-----KGRKLVIDIGGGS 148 (513)
T ss_pred EEEEehHHHHcC--cCHHHHHHHHHHHH---CCC-----eEEeCHHHHHHHHHhhhhcccCC-----CCCeEEEEeCCCe
Confidence 999999999996 89999999999976 886 99999999999999999876531 2356899999999
Q ss_pred eEEEeecCCCCCccceeeEEeccee
Q 016445 233 VQVTFVSDEPLPQEFSRTLKFGNVT 257 (389)
Q Consensus 233 tQIaf~~~~~~~~~~~~~~~l~~~~ 257 (389)
||++...+.. ..+...+.+|...
T Consensus 149 tEl~~~~~~~--~~~~~S~~lG~vr 171 (513)
T PRK10854 149 TELVIGENFE--PILVESRRMGCVS 171 (513)
T ss_pred EEEEEecCCC--eeEeEEEecceee
Confidence 9999986542 2344455556543
No 10
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=99.58 E-value=7.9e-15 Score=142.72 Aligned_cols=129 Identities=19% Similarity=0.293 Sum_probs=93.0
Q ss_pred EEEEEeCCCC-ceeeccceeecCCCCcccCC-CcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEEehhhcccchhcHHH
Q 016445 94 HVFSYDTETN-HFDFDLGSMRLNPGLSSYAV-NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDK 171 (389)
Q Consensus 94 ~Vy~~~~~~~-~l~~~~~~~k~~pGLss~~~-~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATAGmR~l~~~~~~~ 171 (389)
.||+...+.. .++.....+++..|+..-.. .++.+.+.+..|-++.+.. +.++++.|+++||++||.+ +|+++
T Consensus 1 ~I~~~~~~~~~~l~~~~~~vrLg~~~~~~g~i~~e~i~r~~~~L~~f~~~~---~~~~v~~i~~vATsA~R~A--~N~~~ 75 (285)
T PF02541_consen 1 VIAEVKDGKFKILEEEKEIVRLGEGVFETGRISEEAIERAIDALKRFKEIL---KDYGVEKIRAVATSALREA--KNSDE 75 (285)
T ss_dssp EEEEEETTEEEEEEEEEEE--TTTTHHHHSSB-HHHHHHHHHHHHHHHHHH---HHTTGSEEEEEEEHHHHHS--TTHHH
T ss_pred CEEEeCCCCeEEeeeceEEEEcccccccCCCcCHHHHHHHHHHHHHHHHHH---HHCCCCEEEEEhhHHHHhC--cCHHH
Confidence 3677776542 22212345566666644433 4555566666665555544 5778899999999999996 89999
Q ss_pred HHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeecC
Q 016445 172 ILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSD 240 (389)
Q Consensus 172 il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~~ 240 (389)
|+++|++.+ |+. ++||||+|||.|+++|+-..+. +.+...++||||||||+++..+
T Consensus 76 ~~~~i~~~t---Gi~-----i~iIsgeeEa~l~~~gv~~~l~-----~~~~~lviDIGGGStEl~~~~~ 131 (285)
T PF02541_consen 76 FLDRIKKET---GID-----IEIISGEEEARLSFLGVLSSLP-----PDKNGLVIDIGGGSTELILFEN 131 (285)
T ss_dssp HHHHHHHHH---SS------EEEE-HHHHHHHHHHHHHHHST-----TTSSEEEEEEESSEEEEEEEET
T ss_pred HHHHHHHHh---CCc-----eEEecHHHHHHHHHHHHHhhcc-----ccCCEEEEEECCCceEEEEEEC
Confidence 999999976 886 9999999999999999977651 2356789999999999999865
No 11
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=98.06 E-value=2.2e-05 Score=76.25 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=75.9
Q ss_pred CCceEEEEEEeCCCceEEEEEEEeCCCCceee-ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEE
Q 016445 76 SSVKYGVLLDGGSTGTRIHVFSYDTETNHFDF-DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIR 154 (389)
Q Consensus 76 ~~~~y~vVIDaGSsgtRl~Vy~~~~~~~~l~~-~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~ 154 (389)
.+..+.++||+|||++|+.|++...+ .+.. ...+.-+..|. ..|-+.+...|+.+++.|.+.... ++.
T Consensus 21 ~~~~~~~~iDiGSssi~~vv~~~~~~--~~~~~~~~~~~vr~G~---i~di~~a~~~i~~~~~~ae~~~g~------~i~ 89 (267)
T PRK15080 21 TESPLKVGVDLGTANIVLAVLDEDGQ--PVAGALEWADVVRDGI---VVDFIGAVTIVRRLKATLEEKLGR------ELT 89 (267)
T ss_pred CCCCEEEEEEccCceEEEEEEcCCCC--EEEEEeccccccCCCE---EeeHHHHHHHHHHHHHHHHHHhCC------CcC
Confidence 45678899999999999999865332 2211 11111233332 335778888999999988776421 133
Q ss_pred EEEehhhcccc-hhcHHHHHHHHHHHhhccCccccCCceE-EcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCe
Q 016445 155 LMATAGLRLVD-VVVQDKILDSCRRVLRVSGFRFADDWAT-VITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGAS 232 (389)
Q Consensus 155 l~ATAGmR~l~-~~~~~~il~~vr~~l~~s~f~f~~~~i~-VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaS 232 (389)
-++| +++.-. ..++..+.+ ..+..|+. +. ++++.. |+.+.++. +...++|||||+
T Consensus 90 ~v~~-~vp~~~~~~~~~~~~~----~~~~aGl~-----~~~ii~e~~-------A~a~~~~~------~~~~vvDIGggt 146 (267)
T PRK15080 90 HAAT-AIPPGTSEGDPRAIIN----VVESAGLE-----VTHVLDEPT-------AAAAVLGI------DNGAVVDIGGGT 146 (267)
T ss_pred eEEE-EeCCCCCchhHHHHHH----HHHHcCCc-----eEEEechHH-------HHHHHhCC------CCcEEEEeCCCc
Confidence 3344 344322 124555443 33345775 44 665332 22222221 235799999999
Q ss_pred eEEEeecC
Q 016445 233 VQVTFVSD 240 (389)
Q Consensus 233 tQIaf~~~ 240 (389)
|+++...+
T Consensus 147 t~i~v~~~ 154 (267)
T PRK15080 147 TGISILKD 154 (267)
T ss_pred EEEEEEEC
Confidence 99988654
No 12
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.22 E-value=0.025 Score=54.04 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=84.1
Q ss_pred EEeCCCceEEEEEEEeCCCCceeeccceeecCC-CCcc-cCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEEehhh
Q 016445 84 LDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNP-GLSS-YAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGL 161 (389)
Q Consensus 84 IDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k~~p-GLss-~~~~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATAGm 161 (389)
||+||++.++.+.+...+ + + ......+ ++.. -..|.+.+...|+.|++.++..+. ...+.+.+--.+..
T Consensus 2 ~dig~~~ik~v~~~~~~~-~-~----~~~~~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g---~~~~~vvisVP~~~ 72 (239)
T TIGR02529 2 VDLGTANIVIVVLDEDGQ-P-V----AGVMQFADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG---IELTHAATAIPPGT 72 (239)
T ss_pred CCcccceEEEEEEecCCC-E-E----EEEecccccccCCeEEEhHHHHHHHHHHHHHHHHHhC---CCcCcEEEEECCCC
Confidence 799999999999876642 1 1 1111111 1221 123678888999999988876642 22334443333343
Q ss_pred cccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeecCC
Q 016445 162 RLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSDE 241 (389)
Q Consensus 162 R~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~~~ 241 (389)
- ..+++++.+.++. .|+. .+.++ .|..=++++ ++ .....++||||++|.++.....
T Consensus 73 ~---~~~r~a~~~a~~~----aGl~----~~~li---~ep~Aaa~~----~~------~~~~~vvDiGggtt~i~i~~~G 128 (239)
T TIGR02529 73 I---EGDPKVIVNVIES----AGIE----VLHVL---DEPTAAAAV----LQ------IKNGAVVDVGGGTTGISILKKG 128 (239)
T ss_pred C---cccHHHHHHHHHH----cCCc----eEEEe---ehHHHHHHH----hc------CCCcEEEEeCCCcEEEEEEECC
Confidence 2 3556666655554 3664 23343 344334433 12 1235899999999999876443
Q ss_pred CCCccceeeEEecceeEEEEEeecccccHHHH
Q 016445 242 PLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVA 273 (389)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~lYs~SfLg~G~~~a 273 (389)
. ..+.+.+.++|.+++=--..+++.+.++|
T Consensus 129 ~--i~~~~~~~~GG~~it~~Ia~~~~i~~~~A 158 (239)
T TIGR02529 129 K--VIYSADEPTGGTHMSLVLAGAYGISFEEA 158 (239)
T ss_pred e--EEEEEeeecchHHHHHHHHHHhCCCHHHH
Confidence 2 23445555666543211123334444444
No 13
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=95.85 E-value=0.11 Score=53.63 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=41.9
Q ss_pred eEEEEEEeCCCceEEEEEEEeC-CCCceeeccceeecCCCCcc-cCCCcchHHHHHHHHHHHHHHhC
Q 016445 79 KYGVLLDGGSTGTRIHVFSYDT-ETNHFDFDLGSMRLNPGLSS-YAVNPTNAGDSLKDLLDFAKRKV 143 (389)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~-~~~~l~~~~~~~k~~pGLss-~~~~~~~a~~~l~~Ll~~a~~~v 143 (389)
+..+.||+||+.+++.|-++.. +...+. .....+ ..|+.. ...|.+.+.++|+.+++.|++..
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~~~~~~i~-g~~~~~-s~gi~~G~I~d~~~~~~aI~~av~~ae~~~ 72 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLPDGMVNII-GVGSCP-SRGMDKGGVNDLESVVKCVQRAIDQAELMA 72 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcCCCCEEEE-EEEEcc-CCCccCCEEEcHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999998764 322221 111111 234332 23378889999999999998753
No 14
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=94.88 E-value=0.35 Score=48.85 Aligned_cols=61 Identities=16% Similarity=0.028 Sum_probs=41.1
Q ss_pred EEEEEeCCCceEEEEEEEeCCC-Cceeeccceee-cCCCCcc-cCCCcchHHHHHHHHHHHHHHhCC
Q 016445 81 GVLLDGGSTGTRIHVFSYDTET-NHFDFDLGSMR-LNPGLSS-YAVNPTNAGDSLKDLLDFAKRKVP 144 (389)
Q Consensus 81 ~vVIDaGSsgtRl~Vy~~~~~~-~~l~~~~~~~k-~~pGLss-~~~~~~~a~~~l~~Ll~~a~~~vp 144 (389)
.+.||+||+.+++.+-+...++ ..+. .... -..|+.. -..|.+.+.+.|+.+++.|++..+
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~---~~~~~~~~gi~~G~I~d~~~~~~~i~~al~~~e~~~~ 65 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNII---GVGTHPSRGIKKGVINDIEAAVGSIQRAIEAAELMAG 65 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEE---EEEEecCCCccCcEEEcHHHHHHHHHHHHHHHHHHhC
Confidence 3689999999999999876533 2221 1111 1234442 123788899999999999987754
No 15
>CHL00094 dnaK heat shock protein 70
Probab=94.31 E-value=2.2 Score=46.34 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=16.4
Q ss_pred CceeEEeeCCCeeEEEeec
Q 016445 221 ETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 221 ~t~giiDlGGaStQIaf~~ 239 (389)
..+.|+|+|||++.++...
T Consensus 187 ~~vlV~DlGgGT~DvSv~~ 205 (621)
T CHL00094 187 ETILVFDLGGGTFDVSILE 205 (621)
T ss_pred CEEEEEEcCCCeEEEEEEE
Confidence 5678999999999998764
No 16
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=94.25 E-value=0.75 Score=48.27 Aligned_cols=161 Identities=15% Similarity=0.114 Sum_probs=75.4
Q ss_pred eEEEEEEeCCCceEEEEEEEeCCC-------Cceee--ccceeec----CCCCcccCCCcchHHHHHHHHHHHHHHhCCC
Q 016445 79 KYGVLLDGGSTGTRIHVFSYDTET-------NHFDF--DLGSMRL----NPGLSSYAVNPTNAGDSLKDLLDFAKRKVPP 145 (389)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~~-------~~l~~--~~~~~k~----~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp~ 145 (389)
-..|=||+|+|.|.|.+-+..-.+ |.+.+ ++...|- .|=++.-.-|.+++.+-+..=. .+.-+.+
T Consensus 6 i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl~~~~~ID~~~i~~~V~~ey--~~Agi~~ 83 (475)
T PRK10719 6 LLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIYFTPLLKQGEIDEAAIKELIEEEY--QKAGIAP 83 (475)
T ss_pred EEEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecCceecCCCCCccccHHHHHHHHHHHH--HHcCCCH
Confidence 456889999999999988876421 32221 1122221 2322222223333333333322 2222322
Q ss_pred CCC-CCceEEEEEehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCcee
Q 016445 146 AFW-ADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTG 224 (389)
Q Consensus 146 ~~~-~~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~g 224 (389)
+.- ...-|.-..|+.+++ -.+.++.+..... +|-. --=-=+-|++++-+|.-... |..+....+.
T Consensus 84 ~die~~ahIITg~~~~~~N-----l~~~v~~~~~~~g--dfVV-----A~AG~~le~iva~~ASg~av--LseEke~gVa 149 (475)
T PRK10719 84 ESIDSGAVIITGETARKEN-----AREVVMALSGSAG--DFVV-----ATAGPDLESIIAGKGAGAQT--LSEERNTRVL 149 (475)
T ss_pred HHccccEEEEEechhHHHH-----HHHHHHHhccccc--ceee-----eccCccHHHhhhHHHhhHHH--hhhhccCceE
Confidence 222 223344445554443 3444444332221 2210 00011235555444433321 2222234567
Q ss_pred EEeeCCCeeEEEeecCCCCCccceeeEEeccee
Q 016445 225 IIELGGASVQVTFVSDEPLPQEFSRTLKFGNVT 257 (389)
Q Consensus 225 iiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~~ 257 (389)
+||||||.|.++...+... .+...+.++|..
T Consensus 150 ~IDIGgGTT~iaVf~~G~l--~~T~~l~vGG~~ 180 (475)
T PRK10719 150 NIDIGGGTANYALFDAGKV--IDTACLNVGGRL 180 (475)
T ss_pred EEEeCCCceEEEEEECCEE--EEEEEEecccce
Confidence 8999999999998876532 334455555543
No 17
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=94.14 E-value=3 Score=45.37 Aligned_cols=41 Identities=12% Similarity=0.366 Sum_probs=26.8
Q ss_pred ceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeec
Q 016445 191 WATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 191 ~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~ 239 (389)
-+++|+...=|.++| .+.. .....+.|+|+|||++.++...
T Consensus 179 v~~li~EPtAAAlay-----~~~~---~~~~~vlV~DlGGGT~DvSv~~ 219 (616)
T PRK05183 179 VLRLLNEPTAAAIAY-----GLDS---GQEGVIAVYDLGGGTFDISILR 219 (616)
T ss_pred eEEEecchHHHHHHh-----hccc---CCCCEEEEEECCCCeEEEEEEE
Confidence 357777665555544 2221 1235678999999999998764
No 18
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=93.93 E-value=2.4 Score=42.29 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=52.1
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEEehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhh
Q 016445 124 NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVY 203 (389)
Q Consensus 124 ~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y 203 (389)
+.+.+...|+.+++.|...+... ...|-.+++.... .+..+++++.+.++.. |+. .+.+|..-
T Consensus 73 d~d~~~~~l~~~~~~~~~~l~~~--~~~~~vvitvP~~--~~~~~R~~l~~a~~~a----g~~----~~~li~ep----- 135 (335)
T PRK13929 73 DYDMTTDLLKQIMKKAGKNIGMT--FRKPNVVVCTPSG--STAVERRAISDAVKNC----GAK----NVHLIEEP----- 135 (335)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCC--CCHHHHHHHHHHHHHc----CCC----eeEeecCH-----
Confidence 44555566666766664433111 1123344444432 4456788877766553 553 35665433
Q ss_pred hHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeecC
Q 016445 204 AWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSD 240 (389)
Q Consensus 204 ~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~~ 240 (389)
+++-+..|. ..+...+..++|+|||+|+++....
T Consensus 136 --~Aaa~~~g~-~~~~~~~~lvvDiG~gtt~v~vi~~ 169 (335)
T PRK13929 136 --VAAAIGADL-PVDEPVANVVVDIGGGTTEVAIISF 169 (335)
T ss_pred --HHHHHhcCC-CcCCCceEEEEEeCCCeEEEEEEEe
Confidence 222232331 1112235679999999999998743
No 19
>PRK13410 molecular chaperone DnaK; Provisional
Probab=93.92 E-value=2.9 Score=46.03 Aligned_cols=41 Identities=22% Similarity=0.466 Sum_probs=26.5
Q ss_pred ceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeec
Q 016445 191 WATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 191 ~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~ 239 (389)
-+++|+...=|.++ |.+.. ....++.|+|||||++.++...
T Consensus 165 v~~li~EPtAAAla-----yg~~~---~~~~~vlV~DlGgGT~Dvsv~~ 205 (668)
T PRK13410 165 VERILNEPTAAALA-----YGLDR---SSSQTVLVFDLGGGTFDVSLLE 205 (668)
T ss_pred eEEEecchHHHHHH-----hcccc---CCCCEEEEEECCCCeEEEEEEE
Confidence 35677665544443 33321 1235788999999999998764
No 20
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=93.84 E-value=0.24 Score=51.35 Aligned_cols=62 Identities=21% Similarity=0.192 Sum_probs=44.0
Q ss_pred EEEEEEeCCCceEEEEEEEeCCCC--ceee-ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCC
Q 016445 80 YGVLLDGGSTGTRIHVFSYDTETN--HFDF-DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVP 144 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~--~l~~-~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp 144 (389)
+.+.+|+||+.+...|-+...+.. .+.+ +..+.-++.|. ..|.+.+.++++..++.|++..-
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~SrGik~G~---I~di~~~~~sI~~av~~AE~mag 71 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSRGIKKGV---IVDLDAAAQSIKKAVEAAERMAG 71 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCcccccce---EEcHHHHHHHHHHHHHHHHHhcC
Confidence 778999999999999999988531 1211 11122233332 34788999999999999998753
No 21
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=93.77 E-value=0.44 Score=47.91 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=24.5
Q ss_pred CceeEEeeCCCeeEEEeecCCCCCccceeeEEeccee
Q 016445 221 ETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVT 257 (389)
Q Consensus 221 ~t~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~~ 257 (389)
.+..|||+|+++|+|+-..+...-......++++|..
T Consensus 143 ~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~ 179 (373)
T smart00268 143 TTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRD 179 (373)
T ss_pred CEEEEEecCCCcceEEEEECCEEchhhheeccCcHHH
Confidence 4667999999999999876543322333445555543
No 22
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=93.77 E-value=0.98 Score=47.38 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=80.9
Q ss_pred EEEEEEeCCCceEEEEEEEeCC-------CCceee--ccceeec----CCCCcccCCCcchHHHHHHHHHH--HHHHhCC
Q 016445 80 YGVLLDGGSTGTRIHVFSYDTE-------TNHFDF--DLGSMRL----NPGLSSYAVNPTNAGDSLKDLLD--FAKRKVP 144 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~-------~~~l~~--~~~~~k~----~pGLss~~~~~~~a~~~l~~Ll~--~a~~~vp 144 (389)
..|=||+|+|.|.|.+-+..-. -|.+.+ ++...|- .|=++.-.-|. +.++.+++ +.+.-|.
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~~ID~----~al~~iv~~eY~~Agi~ 79 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQTEIDA----EALKEIVEEEYRKAGIT 79 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCCccCH----HHHHHHHHHHHHHcCCC
Confidence 4578999999999998886541 133322 1112221 22222222233 34444443 3333443
Q ss_pred CCCCCCceEEEEEehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCcee
Q 016445 145 PAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTG 224 (389)
Q Consensus 145 ~~~~~~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~g 224 (389)
++.-..--|.+=+-.+ |. +|.+++++.+.+... .|- |-.=--.-|++.+--|.--. .+..+.+.++.
T Consensus 80 p~~I~TGAVIITGETA-rK---eNA~~v~~~Ls~~aG--DFV-----VATAGPdLEsiiAgkGsGA~--~~S~~~~~~V~ 146 (473)
T PF06277_consen 80 PEDIDTGAVIITGETA-RK---ENAREVLHALSGFAG--DFV-----VATAGPDLESIIAGKGSGAA--ALSKEHHTVVA 146 (473)
T ss_pred HHHCccccEEEecchh-hh---hhHHHHHHHHHHhcC--CEE-----EEccCCCHHHHHhccCccHH--HHhhhhCCeEE
Confidence 3433333454444332 33 799999999998775 363 21111223433333221100 01112345667
Q ss_pred EEeeCCCeeEEEeecCCCCCccceeeEEecce
Q 016445 225 IIELGGASVQVTFVSDEPLPQEFSRTLKFGNV 256 (389)
Q Consensus 225 iiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~ 256 (389)
-||||||-|-++....... ...-.+++||+
T Consensus 147 NiDIGGGTtN~avf~~G~v--~~T~cl~IGGR 176 (473)
T PF06277_consen 147 NIDIGGGTTNIAVFDNGEV--IDTACLDIGGR 176 (473)
T ss_pred EEEeCCCceeEEEEECCEE--EEEEEEeeccE
Confidence 7999999999998876532 22334555555
No 23
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=93.74 E-value=0.27 Score=52.10 Aligned_cols=86 Identities=13% Similarity=-0.024 Sum_probs=59.1
Q ss_pred ceEEEEEEeCCCceEEEEEEEeCCCCceeeccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Q 016445 78 VKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMA 157 (389)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~A 157 (389)
....+.||.|+|++|..||+..++.+.--.+.......|--..+..+|.++...+..+++.+.+..+........+....
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig 84 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG 84 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence 46778999999999999999776553211112222222222234458999999999999999988876665555566666
Q ss_pred ehhhcc
Q 016445 158 TAGLRL 163 (389)
Q Consensus 158 TAGmR~ 163 (389)
.+..|.
T Consensus 85 v~~qr~ 90 (516)
T KOG2517|consen 85 VVNQRE 90 (516)
T ss_pred EEecCC
Confidence 666666
No 24
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=93.66 E-value=0.82 Score=45.97 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=25.3
Q ss_pred CceeEEeeCCCeeEEEeecCCCCCccceeeEEeccee
Q 016445 221 ETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVT 257 (389)
Q Consensus 221 ~t~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~~ 257 (389)
.+..|||+|+++|.|+-..+...-......++++|..
T Consensus 143 ~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~ 179 (371)
T cd00012 143 TTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRD 179 (371)
T ss_pred CeEEEEECCCCeeEEEEEECCEEchhhheeccccHHH
Confidence 4667999999999999877654323334455666643
No 25
>PRK13411 molecular chaperone DnaK; Provisional
Probab=93.47 E-value=4.1 Score=44.67 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=16.4
Q ss_pred CCceeEEeeCCCeeEEEeec
Q 016445 220 SETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 220 ~~t~giiDlGGaStQIaf~~ 239 (389)
...+.|+|+|||++.++...
T Consensus 185 ~~~vlV~DlGgGT~dvsi~~ 204 (653)
T PRK13411 185 EQLILVFDLGGGTFDVSILQ 204 (653)
T ss_pred CCEEEEEEcCCCeEEEEEEE
Confidence 35688999999999998653
No 26
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=93.36 E-value=0.8 Score=45.77 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCC-CCCceeEEeeCCCeeEEEeecCC
Q 016445 170 DKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGD-PSETTGIIELGGASVQVTFVSDE 241 (389)
Q Consensus 170 ~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~-~~~t~giiDlGGaStQIaf~~~~ 241 (389)
.++++..-+.+++.|+. ..+|+=+-=|.+..+..++.. +... ..+++.+||||..+|++.+..+.
T Consensus 135 k~~v~~~~~~~~~aGL~-----~~~vDv~~~Al~r~~~~~~~~--~~~~~~~~~~~lvdiG~~~t~~~i~~~g 200 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLK-----PVAVDVEAFALARLFEFLEPQ--LPDEEDAETVALVDIGASSTTVIIFQNG 200 (340)
T ss_dssp HHHHHHHHHHHHHTT-E-----EEEEEEHHHHGGGGGHHHHHT--ST----T-EEEEEEE-SS-EEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCc-----eEEEeehHHHHHHHHHHHHHh--CCcccccceEEEEEecCCeEEEEEEECC
Confidence 45666666667667885 777876555666655544321 2111 22467899999999999987653
No 27
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=93.16 E-value=0.34 Score=45.81 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=36.9
Q ss_pred EEEEEEeCCCceEEEEEEEeCCCCceeecccee---ecCCCCcccCCCcchHHHHHHHHHHHHHHhC
Q 016445 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSM---RLNPGLSSYAVNPTNAGDSLKDLLDFAKRKV 143 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~---k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~v 143 (389)
|.+.||+|++++|+.+|+ ..++ .+....... ...+|. ...+++...+.+..+++.+.+..
T Consensus 1 y~lgiDiGTts~K~~l~d-~~g~-iv~~~~~~~~~~~~~~g~--~e~d~~~~~~~~~~~~~~~~~~~ 63 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD-EDGK-IVASASRPYPYYTPEPGW--AEQDPDEIWEAICEALKELLSQA 63 (245)
T ss_dssp EEEEEEECSSEEEEEEEE-TTSC-EEEEEEEEETEBCSSTTE--EEE-HHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEcccceEEEEEe-CCCC-EEEEEEEeeeeccccccc--cccChHHHHHHHHHHHHHHHhhc
Confidence 678999999999999998 5443 332111111 111222 23378888888877777766654
No 28
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=93.12 E-value=4.1 Score=43.94 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=16.8
Q ss_pred CCceeEEeeCCCeeEEEeec
Q 016445 220 SETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 220 ~~t~giiDlGGaStQIaf~~ 239 (389)
..++.++|+|||++.++...
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILE 201 (595)
T ss_pred CcEEEEEECCCCeEEEEEEE
Confidence 45788999999999998764
No 29
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=93.09 E-value=4.4 Score=43.98 Aligned_cols=40 Identities=15% Similarity=0.373 Sum_probs=25.7
Q ss_pred eEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeec
Q 016445 192 ATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 192 i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~ 239 (389)
+++|+.-.=|.++| .+.. ....++.|+|+|||++.|+...
T Consensus 160 ~~li~EPtAAAlay-----~~~~---~~~~~vlV~DlGgGT~DvSi~~ 199 (599)
T TIGR01991 160 LRLLNEPTAAAVAY-----GLDK---ASEGIYAVYDLGGGTFDVSILK 199 (599)
T ss_pred eEEecCHHHHHHHH-----hhcc---CCCCEEEEEEcCCCeEEEEEEE
Confidence 46666555544443 2221 1235688999999999998764
No 30
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=92.69 E-value=3.7 Score=45.15 Aligned_cols=41 Identities=15% Similarity=0.412 Sum_probs=26.6
Q ss_pred ceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeec
Q 016445 191 WATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 191 ~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~ 239 (389)
-+++|+...=|.++| .+. .+....+.|+|+|||++.++...
T Consensus 204 v~~li~EptAAAlay-----~~~---~~~~~~vlV~DlGgGT~DvSv~~ 244 (663)
T PTZ00400 204 VLRIINEPTAAALAF-----GMD---KNDGKTIAVYDLGGGTFDISILE 244 (663)
T ss_pred eEEEeCchHHHHHHh-----ccc---cCCCcEEEEEeCCCCeEEEEEEE
Confidence 356776655554443 222 11235788999999999998764
No 31
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=92.62 E-value=5.5 Score=43.34 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=25.8
Q ss_pred eEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeecC
Q 016445 192 ATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSD 240 (389)
Q Consensus 192 i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~~ 240 (389)
+++|+...=|.++ |.+.. +...++.|+|+|||++.++...-
T Consensus 164 ~~li~EptAAAl~-----y~~~~---~~~~~vlV~D~GggT~dvsv~~~ 204 (627)
T PRK00290 164 LRIINEPTAAALA-----YGLDK---KGDEKILVYDLGGGTFDVSILEI 204 (627)
T ss_pred EEEecchHHHHHH-----hhhcc---CCCCEEEEEECCCCeEEEEEEEE
Confidence 4666655444433 33322 12357889999999999987643
No 32
>PLN03184 chloroplast Hsp70; Provisional
Probab=92.47 E-value=7.3 Score=42.92 Aligned_cols=20 Identities=30% Similarity=0.601 Sum_probs=16.7
Q ss_pred CCceeEEeeCCCeeEEEeec
Q 016445 220 SETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 220 ~~t~giiDlGGaStQIaf~~ 239 (389)
...+.|+|||||++.++...
T Consensus 223 ~~~vlV~DlGgGT~DvSi~~ 242 (673)
T PLN03184 223 NETILVFDLGGGTFDVSVLE 242 (673)
T ss_pred CCEEEEEECCCCeEEEEEEE
Confidence 35688999999999998764
No 33
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=92.18 E-value=5.7 Score=39.44 Aligned_cols=32 Identities=19% Similarity=0.496 Sum_probs=22.9
Q ss_pred eeEEeeCCCeeEEEeecCCCCCccceeeEEecce
Q 016445 223 TGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNV 256 (389)
Q Consensus 223 ~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~ 256 (389)
..+||||+++|.++...+.. ..+.+.+.+++.
T Consensus 190 ~~lvdiG~~~t~l~i~~~g~--~~~~r~i~~G~~ 221 (348)
T TIGR01175 190 AALVDIGATSSTLNLLHPGR--MLFTREVPFGTR 221 (348)
T ss_pred EEEEEECCCcEEEEEEECCe--EEEEEEeechHH
Confidence 77999999999999876542 244555555543
No 34
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=91.99 E-value=2 Score=43.35 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHh-CCCCCCCCceEEEEEehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHH
Q 016445 130 DSLKDLLDFAKRK-VPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVA 208 (389)
Q Consensus 130 ~~l~~Ll~~a~~~-vp~~~~~~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~Wlav 208 (389)
+.+..+++.+-.. +. ......||.+.--.- .+...++.+.+.+-+.+ +++ .+-++. ++ +.+
T Consensus 74 ~~~e~i~~~~~~~~l~-~~~~~~~vll~~~~~---~~~~~r~~l~e~lfE~~---~~~----~v~~~~---~~----~~a 135 (393)
T PF00022_consen 74 DALEEIWDYIFSNLLK-VDPSDHPVLLTEPPF---NPRSQREKLAEILFEKF---GVP----SVYFIP---SP----LLA 135 (393)
T ss_dssp HHHHHHHHHHHHTTT--SSGGGSEEEEEESTT-----HHHHHHHHHHHHHTS-----S----EEEEEE---HH----HHH
T ss_pred cccccccccccccccc-cccccceeeeecccc---CCchhhhhhhhhhhccc---ccc----eeeeee---cc----ccc
Confidence 4556666655433 22 223456777654432 23455666666555433 442 244443 22 334
Q ss_pred HHhcccCCCCCCCceeEEeeCCCeeEEEeecCCCCCccceeeEEecc
Q 016445 209 NYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGN 255 (389)
Q Consensus 209 Ny~lg~l~~~~~~t~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~ 255 (389)
-|..| ..+..|||+|.++|+|+-+.+...-......+.+||
T Consensus 136 ~~~~g------~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG 176 (393)
T PF00022_consen 136 LYASG------RTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGG 176 (393)
T ss_dssp HHHTT------BSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SH
T ss_pred ccccc------cccccccccceeeeeeeeeeeccccccccccccccH
Confidence 45555 246679999999999998766533223333444444
No 35
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=91.90 E-value=7.6 Score=39.06 Aligned_cols=95 Identities=20% Similarity=0.299 Sum_probs=48.6
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEEehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhh
Q 016445 124 NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVY 203 (389)
Q Consensus 124 ~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y 203 (389)
|.+.+...|..+++.+... .......+.+..-+++ ...++.++.+.+++. |.. .+.+|+ |.+-
T Consensus 70 D~~~~~~~l~~~l~k~~~~---~~~~~p~vvi~vP~~~---T~verrA~~~a~~~a----Ga~----~V~li~---ep~A 132 (326)
T PF06723_consen 70 DYEAAEEMLRYFLKKALGR---RSFFRPRVVICVPSGI---TEVERRALIDAARQA----GAR----KVYLIE---EPIA 132 (326)
T ss_dssp SHHHHHHHHHHHHHHHHTS---S-SS--EEEEEE-SS-----HHHHHHHHHHHHHT----T-S----EEEEEE---HHHH
T ss_pred CHHHHHHHHHHHHHHhccC---CCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHc----CCC----EEEEec---chHH
Confidence 4455566667776666552 2222334555545554 346788888888763 332 466764 4433
Q ss_pred hHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeecC
Q 016445 204 AWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSD 240 (389)
Q Consensus 204 ~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~~ 240 (389)
+-+|+..-. ......-++|||||.|+|+....
T Consensus 133 aAiGaGl~i-----~~~~g~miVDIG~GtTdiavisl 164 (326)
T PF06723_consen 133 AAIGAGLDI-----FEPRGSMIVDIGGGTTDIAVISL 164 (326)
T ss_dssp HHHHTT--T-----TSSS-EEEEEE-SS-EEEEEEET
T ss_pred HHhcCCCCC-----CCCCceEEEEECCCeEEEEEEEC
Confidence 333332211 11233569999999999998753
No 36
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=91.83 E-value=11 Score=40.86 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=26.5
Q ss_pred ceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeec
Q 016445 191 WATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 191 ~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~ 239 (389)
-+++|+.-.=|.++| .+.. ....++.|+|+|||++.++...
T Consensus 171 v~~li~EPtAAAlay-----~~~~---~~~~~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 171 VLRLIAEPTAAAYAY-----GLNK---NQKGCYLVYDLGGGTFDVSILN 211 (595)
T ss_pred EEEEecCcHHHHHHH-----hccc---CCCCEEEEEECCCCcEEEEEEE
Confidence 467777665555443 2221 1234678999999999998764
No 37
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=91.50 E-value=2.5 Score=40.32 Aligned_cols=110 Identities=24% Similarity=0.215 Sum_probs=61.0
Q ss_pred EEEEEEeCCCceEEEEEEEeCCCCceeeccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEEeh
Q 016445 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATA 159 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATA 159 (389)
|.+-||+||++++..+|+ + + ..+. .....|+ ...+.+.+.+..+++.+ +.. ...-..+..|.
T Consensus 1 ~~lGIDiGtts~K~vl~d-~-g-~il~----~~~~~~~-----~~~~~~~~~l~~~~~~~----~~~--~~~i~~i~~Tg 62 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-D-G-KVIG----YKWLDTT-----PVIEETARAILEALKEA----GIG--LEPIDKIVATG 62 (248)
T ss_pred CEEEEEcChhheEEEEEc-C-C-EEEE----EEEecCC-----CCHHHHHHHHHHHHHHc----CCC--hhheeEEEEEC
Confidence 345699999999999996 3 2 2232 2222222 12333444455444322 111 11234455666
Q ss_pred hhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeec
Q 016445 160 GLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 160 GmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~ 239 (389)
-+|.+= . | .+ .-..|-..--.|+.++.. +...||||||.-+.+....
T Consensus 63 ~~~~~v-------~-----------~--~~------~~~~ei~~~~~g~~~~~~-------~~~~vidiGgqd~k~i~~~ 109 (248)
T TIGR00241 63 YGRHKV-------G-----------F--AD------KIVTEISCHGKGANYLAP-------EARGVIDIGGQDSKVIKID 109 (248)
T ss_pred CCcccc-------c-----------c--cC------CceEEhhHHHHHHHHHCC-------CCCEEEEecCCeeEEEEEC
Confidence 555531 0 1 11 023466667778888753 3446999999999998875
Q ss_pred C
Q 016445 240 D 240 (389)
Q Consensus 240 ~ 240 (389)
+
T Consensus 110 ~ 110 (248)
T TIGR00241 110 D 110 (248)
T ss_pred C
Confidence 3
No 38
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=90.22 E-value=12 Score=36.91 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=16.5
Q ss_pred ceeEEeeCCCeeEEEeecCC
Q 016445 222 TTGIIELGGASVQVTFVSDE 241 (389)
Q Consensus 222 t~giiDlGGaStQIaf~~~~ 241 (389)
+..++|+|||.|+++.....
T Consensus 153 ~~lVvDiG~gttdvs~v~~g 172 (335)
T PRK13930 153 GNMVVDIGGGTTEVAVISLG 172 (335)
T ss_pred ceEEEEeCCCeEEEEEEEeC
Confidence 45799999999999987543
No 39
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=89.58 E-value=18 Score=39.91 Aligned_cols=40 Identities=15% Similarity=0.423 Sum_probs=25.6
Q ss_pred eEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeec
Q 016445 192 ATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 192 i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~ 239 (389)
+++|+.-.=|.++ |.+.. .....+.|+|||||.+.++...
T Consensus 191 ~rlInEPtAAAla-----yg~~~---~~~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 191 IRVVNEPTAAALA-----YGMDK---TKDSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred EEEEcChHHHHHH-----HhccC---CCCCEEEEEECCCCeEEEEEEE
Confidence 4666655444433 33321 1235788999999999998764
No 40
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=89.54 E-value=3.7 Score=40.63 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=15.8
Q ss_pred ceeEEeeCCCeeEEEeecC
Q 016445 222 TTGIIELGGASVQVTFVSD 240 (389)
Q Consensus 222 t~giiDlGGaStQIaf~~~ 240 (389)
.+.++|+|||.|+++....
T Consensus 149 ~~lvvDiGggttdvs~v~~ 167 (334)
T PRK13927 149 GSMVVDIGGGTTEVAVISL 167 (334)
T ss_pred eEEEEEeCCCeEEEEEEec
Confidence 3579999999999997743
No 41
>PTZ00281 actin; Provisional
Probab=89.30 E-value=5.7 Score=40.37 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=24.9
Q ss_pred CceeEEeeCCCeeEEEeecCCCCCccceeeEEeccee
Q 016445 221 ETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVT 257 (389)
Q Consensus 221 ~t~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~~ 257 (389)
.+..|||+|-++|+|+=+-+...-....++++++|..
T Consensus 149 ~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~ 185 (376)
T PTZ00281 149 TTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 185 (376)
T ss_pred ceEEEEECCCceEEEEEEEecccchhheeeccCcHHH
Confidence 3566999999999998665543333344556666653
No 42
>PTZ00004 actin-2; Provisional
Probab=88.86 E-value=5.7 Score=40.34 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=25.6
Q ss_pred CceeEEeeCCCeeEEEeecCCCCCccceeeEEecceeE
Q 016445 221 ETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTY 258 (389)
Q Consensus 221 ~t~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~~~ 258 (389)
.|..|||+|.+.|+|+=+.+...-......++++|...
T Consensus 149 ~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~l 186 (378)
T PTZ00004 149 TTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDL 186 (378)
T ss_pred ceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHH
Confidence 35569999999999987766433333445566666543
No 43
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.91 E-value=4.9 Score=40.46 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=27.9
Q ss_pred eEEcCCccchhhhHHHHHHhcccCCCCCC-CceeEEeeCCCeeEEEeecCCC
Q 016445 192 ATVITGSDEGVYAWIVANYALGTLGGDPS-ETTGIIELGGASVQVTFVSDEP 242 (389)
Q Consensus 192 i~VIsG~eEg~y~WlavNy~lg~l~~~~~-~t~giiDlGGaStQIaf~~~~~ 242 (389)
+.|++=+.=|.+--+. -+++.+..+.. ..+.++|||+.|+++.+.-+..
T Consensus 165 ~~vlDV~~fAl~ra~~--~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk 214 (354)
T COG4972 165 PKVLDVESFALLRAYR--LLASQFGPEEAAMKVAVFDIGATSSELLVIQDGK 214 (354)
T ss_pred ceEEehHHHHHHHHHH--HHHHHhCCchhhhhheeeeecccceEEEEEECCe
Confidence 5555555444443333 22233332222 2257899999999999986653
No 44
>PTZ00452 actin; Provisional
Probab=87.17 E-value=12 Score=38.11 Aligned_cols=38 Identities=5% Similarity=0.007 Sum_probs=26.5
Q ss_pred CceeEEeeCCCeeEEEeecCCCCCccceeeEEecceeE
Q 016445 221 ETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTY 258 (389)
Q Consensus 221 ~t~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~~~ 258 (389)
.+..|||+|-+.|+++=+-+...-.....+++++|...
T Consensus 148 ~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~l 185 (375)
T PTZ00452 148 TIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLC 185 (375)
T ss_pred ceeeeecCCCCcceEEEEECCEEeccceEEeeccchHH
Confidence 35569999999999987766543334455677777543
No 45
>PTZ00466 actin-like protein; Provisional
Probab=86.66 E-value=7 Score=39.89 Aligned_cols=105 Identities=8% Similarity=0.077 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCceEEEEEehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHH
Q 016445 130 DSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVAN 209 (389)
Q Consensus 130 ~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavN 209 (389)
+.++.+.+.+-+.+... ....||.+ ..+.+ .+..+++.+.+.+=+.+ +++ .+-+. .+++.+-
T Consensus 87 d~~e~iw~~~f~~l~v~-~~~~pvll-te~~~--~~~~~re~~~e~lFE~~---~~p----~~~~~---~~~~lsl---- 148 (380)
T PTZ00466 87 NDMENIWIHVYNSMKIN-SEEHPVLL-TEAPL--NPQKNKEKIAEVFFETF---NVP----ALFIS---IQAILSL---- 148 (380)
T ss_pred HHHHHHHHHHHhhcccC-CccCeEEE-ecCcc--ccHHHHHHHHHHHhccC---CCC----eEEEe---cchHHHH----
Confidence 34555555553333211 12356655 33332 34566676666654433 332 23332 2333333
Q ss_pred HhcccCCCCCCCceeEEeeCCCeeEEEeecCCCCCccceeeEEecceeE
Q 016445 210 YALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTY 258 (389)
Q Consensus 210 y~lg~l~~~~~~t~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~~~ 258 (389)
|..| ..+..|||+|-++|+|+=+-+...-......++++|...
T Consensus 149 ~a~g------~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~l 191 (380)
T PTZ00466 149 YSCG------KTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDI 191 (380)
T ss_pred HhcC------CceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHH
Confidence 3333 235669999999999987665433233344566666543
No 46
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=83.12 E-value=9.2 Score=40.85 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEEEEehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHH
Q 016445 129 GDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVA 208 (389)
Q Consensus 129 ~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~Wlav 208 (389)
...|..|.+.|...+.. ..+.+.+---|.. ...+++++.++++. .|+. .+++|+.. +|. ++
T Consensus 117 ~~~l~~l~~~a~~~~~~---~~~~~vitVPa~~---~~~qr~~~~~Aa~~----agl~----~~~li~Ep-~Aa----a~ 177 (602)
T PF00012_consen 117 AMILKYLKEMAEKYLGE---KVTDVVITVPAYF---TDEQRQALRDAAEL----AGLN----VLRLINEP-TAA----AL 177 (602)
T ss_dssp HHHHHHHHHHHHHHHTS---BEEEEEEEE-TT-----HHHHHHHHHHHHH----TT-E----EEEEEEHH-HHH----HH
T ss_pred ccchhhhcccchhhccc---ccccceeeechhh---hhhhhhcccccccc----cccc----cceeeccc-ccc----cc
Confidence 34566666666665421 1233433333332 23566777777765 3774 36777533 322 34
Q ss_pred HHhcccCCCCCCCceeEEeeCCCeeEEEeec
Q 016445 209 NYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 209 Ny~lg~l~~~~~~t~giiDlGGaStQIaf~~ 239 (389)
.|.+..-. ...++.++|+|||++.++...
T Consensus 178 ~y~~~~~~--~~~~vlv~D~Gggt~dvs~~~ 206 (602)
T PF00012_consen 178 AYGLERSD--KGKTVLVVDFGGGTFDVSVVE 206 (602)
T ss_dssp HTTTTSSS--SEEEEEEEEEESSEEEEEEEE
T ss_pred cccccccc--cccceeccccccceEeeeehh
Confidence 45544322 235788999999999999874
No 47
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=78.70 E-value=8 Score=40.93 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=36.5
Q ss_pred CceEEEEEEeCCCceEEEEEEEeCCCCceeeccceee---cCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 016445 77 SVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (389)
Q Consensus 77 ~~~y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k---~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ 142 (389)
...|.+.||+|+|++|..+|.-+. ...+........ -.||-+. .+|+..-+.+...+..+.+.
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~~~-~~~~~~~~~~~~~~~~~~g~~e--~d~~~~w~~~~~ai~~l~~~ 67 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDEDG-GEVVATARFENPVSTPQPGWAE--QDPDELWQAILEALRQLLEE 67 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeCCC-CeEEEEeeccccccCCCCCCcc--cCHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999998774 222221111111 2333222 36776665555555544444
No 48
>PTZ00280 Actin-related protein 3; Provisional
Probab=78.69 E-value=23 Score=36.38 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=25.5
Q ss_pred CceeEEeeCCCeeEEEeecCCCCCccceeeEEecceeE
Q 016445 221 ETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTY 258 (389)
Q Consensus 221 ~t~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~~~ 258 (389)
.+..|||+|.+.|+|+-+.+........+.++++|...
T Consensus 160 ~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~l 197 (414)
T PTZ00280 160 LTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDI 197 (414)
T ss_pred eeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHH
Confidence 35569999999999997766533333345566676543
No 49
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=77.52 E-value=50 Score=32.75 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=16.6
Q ss_pred ceeEEeeCCCeeEEEeecCC
Q 016445 222 TTGIIELGGASVQVTFVSDE 241 (389)
Q Consensus 222 t~giiDlGGaStQIaf~~~~ 241 (389)
...++|+|||.|+++.....
T Consensus 148 ~~lVvDiGggttdvsvv~~g 167 (336)
T PRK13928 148 GNMVVDIGGGTTDIAVLSLG 167 (336)
T ss_pred eEEEEEeCCCeEEEEEEEeC
Confidence 46789999999999987543
No 50
>PRK04123 ribulokinase; Provisional
Probab=74.29 E-value=12 Score=39.98 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=19.2
Q ss_pred eEEEEEEeCCCceEEEEEEEeCC
Q 016445 79 KYGVLLDGGSTGTRIHVFSYDTE 101 (389)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~ 101 (389)
.|.+.||+|+|++|+.||....+
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~~~g 25 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDCATG 25 (548)
T ss_pred cEEEEEecCCCceEEEEEECCCC
Confidence 47788999999999999986333
No 51
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=74.16 E-value=48 Score=36.39 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCceEEEEEehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHH
Q 016445 130 DSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVAN 209 (389)
Q Consensus 130 ~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavN 209 (389)
..|..|.+.|..... ...+.+.+---|-. ...+++++.++++. .||. -+++|+...=|.++
T Consensus 123 ~iL~~lk~~ae~~~g---~~v~~~VItVPa~f---~~~qR~a~~~Aa~~----AGl~----v~~li~EptAAAl~----- 183 (653)
T PTZ00009 123 MVLQKMKEIAEAYLG---KQVKDAVVTVPAYF---NDSQRQATKDAGTI----AGLN----VLRIINEPTAAAIA----- 183 (653)
T ss_pred HHHHHHHHHHHHHhC---CCcceeEEEeCCCC---CHHHHHHHHHHHHH----cCCc----eeEEecchHHHHHH-----
Confidence 455666666666542 12334444333333 23567777666664 3775 46888776544444
Q ss_pred HhcccCCCCCCCceeEEeeCCCeeEEEeec
Q 016445 210 YALGTLGGDPSETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 210 y~lg~l~~~~~~t~giiDlGGaStQIaf~~ 239 (389)
|.+..-. ....++.++|+|||++.++...
T Consensus 184 y~~~~~~-~~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 184 YGLDKKG-DGEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred HhhhccC-CCCCEEEEEECCCCeEEEEEEE
Confidence 3332111 1235688999999999998764
No 52
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=74.07 E-value=11 Score=39.90 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.7
Q ss_pred eEEEEEEeCCCceEEEEEEEe
Q 016445 79 KYGVLLDGGSTGTRIHVFSYD 99 (389)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~ 99 (389)
+|.+.||+|+|++|+.+|..+
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred cEEEEEecCCCceEEEEECCC
Confidence 588899999999999999854
No 53
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=73.52 E-value=11 Score=40.05 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=18.0
Q ss_pred EEEEEEeCCCceEEEEEEEeC
Q 016445 80 YGVLLDGGSTGTRIHVFSYDT 100 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~ 100 (389)
|.+.||+|++++|..||....
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~ 22 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVAT 22 (536)
T ss_pred eEEEEecCCCceEEEEEECCC
Confidence 668899999999999998433
No 54
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=73.50 E-value=8.2 Score=38.39 Aligned_cols=57 Identities=23% Similarity=0.234 Sum_probs=40.8
Q ss_pred CceEEEEEEeCCCceEEEEEEEeCCCCceeeccceeecCCCCcccCCCc-chHHHHHHHHHHHHHH
Q 016445 77 SVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNP-TNAGDSLKDLLDFAKR 141 (389)
Q Consensus 77 ~~~y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k~~pGLss~~~~~-~~a~~~l~~Ll~~a~~ 141 (389)
++.|.+=||.|+|+||..|+. ..++ .+ -+-.-|=+++...+ +.+...+...+..|..
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~-~~g~-vl------g~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~ 60 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLAD-EDGN-VL------GRGKSGPANIQLVGKEEAVRNIKDAIREALD 60 (301)
T ss_pred CccEEEEEccCCcceEEEEEc-CCCc-EE------EEeccCCceecccchHHHHHHHHHHHHHHHH
Confidence 467889999999999999998 3222 22 23334557777777 8888888877776653
No 55
>PLN02295 glycerol kinase
Probab=71.03 E-value=14 Score=39.11 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=34.0
Q ss_pred EEEEEEeCCCceEEEEEEEeCCCCceee--ccce-eecCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 016445 80 YGVLLDGGSTGTRIHVFSYDTETNHFDF--DLGS-MRLNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~l~~--~~~~-~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ 142 (389)
|.+.||+|++++|..||.-+ ++ .+.. .... ..-.||.. ..+|+..-+.+..+++.+.+.
T Consensus 1 ~vlgID~GTts~Ka~l~d~~-G~-~~~~~~~~~~~~~~~~G~~--Eqdp~~~w~~~~~~i~~~~~~ 62 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRD-AR-PVASHQVEFTQIYPQAGWV--EHDPMEILESVLTCIAKALEK 62 (512)
T ss_pred CEEEEecCCCceEEEEECCC-CC-EEEEEeecccccCCCCCcE--eeCHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999732 22 2221 0111 11124543 337777766666666655444
No 56
>PF13941 MutL: MutL protein
Probab=70.45 E-value=14 Score=38.96 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=43.0
Q ss_pred EEEEeCCCceEEEEEEEeCCCCceeeccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCC-CCCceEEEEEeh-
Q 016445 82 VLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAF-WADTEIRLMATA- 159 (389)
Q Consensus 82 vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp~~~-~~~tpv~l~ATA- 159 (389)
+++|+|||-|++.+|+...+.+.+-. + ..-..+- .++++...+...++..++..|... .....++.-..|
T Consensus 3 L~~DiGST~Tk~~l~d~~~~~~~~ig-----~-a~apTTv--~~~Dv~~G~~~A~~~l~~~~~~~~~~~~~~~la~SSAa 74 (457)
T PF13941_consen 3 LVVDIGSTYTKVTLFDLVDGEPRLIG-----Q-AEAPTTV--EPGDVTIGLNNALEQLEEQTPASPDDGYDKVLACSSAA 74 (457)
T ss_pred EEEEeCCcceEEeEEeccCCccEEEE-----E-EeCCCCc--CcccHHHHHHHHHHHHHHhcCCCcccCceEEEEECCCC
Confidence 68999999999999995554433311 0 0011111 235677778888787777776533 333333332222
Q ss_pred -hhcc
Q 016445 160 -GLRL 163 (389)
Q Consensus 160 -GmR~ 163 (389)
|||+
T Consensus 75 GGLrm 79 (457)
T PF13941_consen 75 GGLRM 79 (457)
T ss_pred CcceE
Confidence 5665
No 57
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=69.75 E-value=29 Score=35.74 Aligned_cols=116 Identities=23% Similarity=0.212 Sum_probs=64.1
Q ss_pred CceEEEEEEeCCCceEEEEEEEeCCCCceeeccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEE
Q 016445 77 SVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLM 156 (389)
Q Consensus 77 ~~~y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ 156 (389)
...+.+=||+|||+|.+.+.+-.. .+. .......+|. |. +.+.++..++.+... . ..-..+.
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d~~---~I~--~~~~~~t~g~------p~-~~~~l~~~le~l~~~----~--~~I~~~~ 194 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMEDGK---EIL--YGFYVSTKGR------PI-AEKALKEALEELGEK----L--EEILGLG 194 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeCCC---eEE--EEEEEcCCCC------hh-HHHHHHHHHHHcccC----h--heeeeee
Confidence 345667899999999999986443 221 2234444553 22 444555555544332 1 2234445
Q ss_pred EehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEE
Q 016445 157 ATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVT 236 (389)
Q Consensus 157 ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIa 236 (389)
+|.==|.+ +...+ +.+ -+..|-.=-..|+.|+.. +.-.||||||==+-+.
T Consensus 195 ~TGYGR~~-----------v~~~~---~aD---------~~~~Ei~ah~kgA~~f~p-------~~dtIiDIGGQD~K~i 244 (396)
T COG1924 195 VTGYGRNL-----------VGAAL---GAD---------KVVVEISAHAKGARYFAP-------DVDTVIDIGGQDSKVI 244 (396)
T ss_pred eecccHHH-----------hhhhh---cCC---------cceeeeehhHHHHHHhCC-------CCcEEEEecCcceeEE
Confidence 55533332 11111 111 144566667788888752 2348999999877776
Q ss_pred eecC
Q 016445 237 FVSD 240 (389)
Q Consensus 237 f~~~ 240 (389)
-..+
T Consensus 245 ~i~d 248 (396)
T COG1924 245 KLED 248 (396)
T ss_pred EEeC
Confidence 6543
No 58
>PRK10331 L-fuculokinase; Provisional
Probab=68.90 E-value=18 Score=37.79 Aligned_cols=58 Identities=12% Similarity=-0.029 Sum_probs=33.7
Q ss_pred EEEEEEeCCCceEEEEEEEeCCCCceeeccceee-----cCCCCcccCCCcchHHHHHHHHHHHHHH
Q 016445 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR-----LNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k-----~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (389)
|.+.||+|++++|..+|.-+ ++ .+........ ..||- ...+|+...+.+..+++.+.+
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~-G~-~~~~~~~~~~~~~~~~~~g~--~eqd~~~~w~~~~~~~~~~~~ 65 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQ-GK-IVARASTPNASDIAAENSDW--HQWSLDAILQRFADCCRQINS 65 (470)
T ss_pred eEEEEecCCCceEEEEEcCC-Cc-EEEEEecccccccCCCCCCC--cccCHHHHHHHHHHHHHHHHH
Confidence 77899999999999999844 32 2221111111 12332 234777766666666555543
No 59
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=68.76 E-value=28 Score=31.55 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=40.4
Q ss_pred EEEEeCCCceEEEEEEEeC-CCCceeeccceeec-CCCCcc-cCCCcchHHHHHHHHHHHHHHhCC
Q 016445 82 VLLDGGSTGTRIHVFSYDT-ETNHFDFDLGSMRL-NPGLSS-YAVNPTNAGDSLKDLLDFAKRKVP 144 (389)
Q Consensus 82 vVIDaGSsgtRl~Vy~~~~-~~~~l~~~~~~~k~-~pGLss-~~~~~~~a~~~l~~Ll~~a~~~vp 144 (389)
+.||+||+.+++.+-+... +...+. ..... ..|+.. -..|.+.+.+.|+.+++.|++...
T Consensus 2 ~~lDIGs~~ik~vv~~~~~~~~~~i~---g~~~~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~~~ 64 (187)
T smart00842 2 VGLDIGTSKIKALVAEVDEDGEINVI---GVGEVPSRGIRKGVIVDIEAAARAIREAVEEAERMAG 64 (187)
T ss_pred EEEEeccceEEEEEEEEcCCCCEEEE---EEEEecCCCccCcEEECHHHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999874 333321 11111 123322 123788899999999999988754
No 60
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=68.04 E-value=7.5 Score=37.26 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=39.8
Q ss_pred EEEeCCCceEEEEEEEeCCCCceeeccceeecCCCCcccC-CCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEEehhh
Q 016445 83 LLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYA-VNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGL 161 (389)
Q Consensus 83 VIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k~~pGLss~~-~~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATAGm 161 (389)
=||+|+|+||+.+++-+. ..+. ..+..+ +++. ...+.+.+.|..+++.+.+..+....... ...++.+|+
T Consensus 2 GIDgGgTkt~~vl~d~~g--~il~----~~~~~~--~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~-~~~~g~aG~ 72 (271)
T PF01869_consen 2 GIDGGGTKTKAVLVDENG--NILG----RGKGGG--ANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIA-AICIGAAGY 72 (271)
T ss_dssp EEEECSSEEEEEEEETTS--EEEE----EEEES---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCC-EEEEEEEEE
T ss_pred EEeeChheeeeEEEeCCC--CEEE----EEEeCC--CCCCCCCcchhhhHHHHHHHHHHHHcCCCccccc-eeeeeEeee
Confidence 389999999999997432 1221 112122 2222 23456667777777777666654433233 334555554
Q ss_pred cc
Q 016445 162 RL 163 (389)
Q Consensus 162 R~ 163 (389)
=.
T Consensus 73 ~~ 74 (271)
T PF01869_consen 73 GR 74 (271)
T ss_dssp EE
T ss_pred cC
Confidence 44
No 61
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=67.98 E-value=20 Score=37.78 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=33.8
Q ss_pred eEEEEEEeCCCceEEEEEEEeCCCCceeeccce---eecCCCCcccCCCcchHHHHHHHHHHHHHH
Q 016445 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGS---MRLNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (389)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~---~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (389)
.|.+.||+|++++|..||..+ ++ .+...... ....+|-. ..+|+..-+.+..+++.+..
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~-G~-~v~~~~~~~~~~~~~~g~~--eqd~~~~~~~~~~~l~~~~~ 63 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEK-GN-VVSSHQIPHEQITPHPGWL--EHDPEEILRNVYKCMNEAIK 63 (504)
T ss_pred cEEEEEecCCCceEEEEECCC-CC-EEEEEEEeecccCCCCCeE--eeCHHHHHHHHHHHHHHHHH
Confidence 377889999999999999843 32 22211111 12234432 23677666665555555443
No 62
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=67.83 E-value=16 Score=38.09 Aligned_cols=58 Identities=14% Similarity=0.009 Sum_probs=34.6
Q ss_pred EEEEEEeCCCceEEEEEEEeCCCCceeeccc--ee---ecCCCCcccCCCcchHHHHHHHHHHHHHH
Q 016445 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLG--SM---RLNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~--~~---k~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (389)
|.+.||+|+|++|+.|+..+ ++ .+..... .. ...+|-. ..+|+...+.+..+++.+..
T Consensus 2 ~ilgiD~GTss~K~~l~d~~-g~-~va~~~~~~~~~~~~~~~g~~--eqd~~~~w~~~~~~~~~l~~ 64 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ-GK-IVASASTPNATKQAIENNDYH--IWDLEAIWQKLADCCQQINS 64 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC-CC-EEEEEecccccCCCCCCCCce--eeCHHHHHHHHHHHHHHHHh
Confidence 56789999999999999853 33 2221011 11 1234433 23777777666666666543
No 63
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=66.38 E-value=90 Score=31.39 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=30.1
Q ss_pred CceeEEeeCCCeeEEEeecCCCCCccceeeEEecceeEEEEEeecccccHHHHHHHHHHHhh
Q 016445 221 ETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLS 282 (389)
Q Consensus 221 ~t~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~~~~lYs~SfLg~G~~~ar~~~~~~l~ 282 (389)
...++||+||+.|.++.......- .-.+.|. -.|...+.+.+.+.+.
T Consensus 185 ~~ilvIDIG~~TtD~~v~~~~~~~--------------~~~s~s~-~~G~~~~~~~I~~~i~ 231 (344)
T PRK13917 185 GKVSVIDFGSGTTDLDTIQNLKRV--------------EEESFVI-PKGTIDVYKRIASHIS 231 (344)
T ss_pred CcEEEEEcCCCcEEEEEEeCcEEc--------------ccccccc-cchHHHHHHHHHHHHH
Confidence 357899999999999876422110 1112223 3788888888777663
No 64
>PRK11678 putative chaperone; Provisional
Probab=65.84 E-value=1.5e+02 Score=31.21 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEEEEehhhcccc--hhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHH
Q 016445 129 GDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVD--VVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWI 206 (389)
Q Consensus 129 ~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATAGmR~l~--~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~Wl 206 (389)
...|..|.+.|...+.. ..+.+.+---+...... ..++.+ .+.+++..+..||. .+++|+.-.=|.++|-
T Consensus 131 a~iL~~lk~~ae~~~g~---~v~~~VItvPa~F~~~~~~~~qr~a-~~~l~~Aa~~AG~~----~v~li~EPtAAAl~y~ 202 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQA---AITQAVIGRPVNFQGLGGEEANRQA-EGILERAAKRAGFK----DVEFQFEPVAAGLDFE 202 (450)
T ss_pred HHHHHHHHHHHHHHhCC---CCCcEEEEECCccccCCcchhHHHH-HHHHHHHHHHcCCC----EEEEEcCHHHHHHHhc
Confidence 34556666666665421 13444444444433111 122222 12222222234785 5888887666666541
Q ss_pred HHHHhcccCCCCCCCceeEEeeCCCeeEEEeecCCCCCccceeeEEecceeEEEEEeecccccHHHHHHHHH
Q 016445 207 VANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLR 278 (389)
Q Consensus 207 avNy~lg~l~~~~~~t~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~~~~lYs~SfLg~G~~~ar~~~~ 278 (389)
. .+ +..+.+.|+|+|||.+.++...-.+. . ........+|.+++-..+|-+..-.++.
T Consensus 203 -----~-~~--~~~~~vlV~D~GGGT~D~Svv~~~~~---~---~~~~~r~~~vla~~G~~lGG~DfD~~L~ 260 (450)
T PRK11678 203 -----A-TL--TEEKRVLVVDIGGGTTDCSMLLMGPS---W---RGRADRSASLLGHSGQRIGGNDLDIALA 260 (450)
T ss_pred -----c-cc--CCCCeEEEEEeCCCeEEEEEEEecCc---c---cccCCcceeEEecCCCCCChHHHHHHHH
Confidence 1 11 12357889999999999988753221 0 0011234568888877788776655554
No 65
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=65.57 E-value=87 Score=31.15 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=61.0
Q ss_pred eEEEEEEeCCCceEEEEEEEeCCCCceeeccceeecCCCCcccCCCc-chHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Q 016445 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNP-TNAGDSLKDLLDFAKRKVPPAFWADTEIRLMA 157 (389)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k~~pGLss~~~~~-~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~A 157 (389)
.|.+=||+||++|.+.|.+ + +. .+. ...+.- ..+| +.+.+.|+.+++.+.. . ...--++.+
T Consensus 32 m~~~GIDiGStt~K~Vlld-~-~~-i~~----~~~~~t-----g~~~~~~a~~~l~~~l~~~g~----~--~~~v~~~~~ 93 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC-D-GE-LYG----YNSMRT-----GNNSPDSAKNALQGIMDKIGM----K--LEDINYVVG 93 (293)
T ss_pred cEEEEEEeCchhEEEEEEe-C-CE-EEE----EEeecC-----CCCHHHHHHHHHHHHHHHcCC----c--ccceEEEEE
Confidence 4677899999999999997 3 21 221 111111 2233 3345566666554421 1 112334667
Q ss_pred ehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEe
Q 016445 158 TAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTF 237 (389)
Q Consensus 158 TAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf 237 (389)
|.-=|.+= +| .+ ++ ..|-.---.+++|+.+ .+...||||||=-+-+.+
T Consensus 94 TGyGr~~~------------------~~--a~---~~---v~EItaha~Ga~~~~p------p~v~tIIDIGGQDsK~I~ 141 (293)
T TIGR03192 94 TGYGRVNV------------------PF--AH---KA---ITEIACHARGANYMGG------NAVRTILDMGGQDCKAIH 141 (293)
T ss_pred ECcchhhc------------------ch--hh---cc---eeeHHHHHHHHHHhcC------CCCCEEEEeCCCceEEEE
Confidence 87555420 11 11 11 2354555667777642 235589999999888776
Q ss_pred e
Q 016445 238 V 238 (389)
Q Consensus 238 ~ 238 (389)
.
T Consensus 142 ~ 142 (293)
T TIGR03192 142 C 142 (293)
T ss_pred E
Confidence 6
No 66
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=63.84 E-value=13 Score=36.80 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=52.6
Q ss_pred ehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCC-CCCceeEEeeCCCeeEEE
Q 016445 158 TAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGD-PSETTGIIELGGASVQVT 236 (389)
Q Consensus 158 TAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~-~~~t~giiDlGGaStQIa 236 (389)
-|+|-..+.-+=+.|-+.+.+.+ + +.|--|--|+..+-+++ |... ......|+|||||||--+
T Consensus 86 iAAMVkt~~l~M~~iA~~l~~~l---g-------v~V~igGvEAemAi~GA------LTTPGt~~PlaIlDmG~GSTDAs 149 (332)
T PF08841_consen 86 IAAMVKTDKLQMQMIADELEEEL---G-------VPVEIGGVEAEMAILGA------LTTPGTDKPLAILDMGGGSTDAS 149 (332)
T ss_dssp EEEEEE-SS-TCHHHHHHHHHHH---T-------SEEEEECEHHHHHHHHH------TTSTT--SSEEEEEE-SSEEEEE
T ss_pred HHHHHhcccccHHHHHHHHHHHH---C-------CceEEccccHHHHHhcc------cCCCCCCCCeEEEecCCCcccHH
Confidence 34444433223355666777766 3 44444666776666554 3221 124568999999999987
Q ss_pred eecCCCCCccceeeEEec--ceeEEEEEeecccccHHHHHHHHHH
Q 016445 237 FVSDEPLPQEFSRTLKFG--NVTYNLYSHSFLHFGQNVAFETLRE 279 (389)
Q Consensus 237 f~~~~~~~~~~~~~~~l~--~~~~~lYs~SfLg~G~~~ar~~~~~ 279 (389)
....+. ....+++. |...++--.|=||+.-..--+.+.+
T Consensus 150 ii~~~g----~v~~iHlAGAG~mVTmlI~sELGl~d~~lAE~IKk 190 (332)
T PF08841_consen 150 IINRDG----EVTAIHLAGAGNMVTMLINSELGLEDRELAEDIKK 190 (332)
T ss_dssp EE-TTS-----EEEEEEE-SHHHHHHHHHHHCT-S-HHHHHHHHH
T ss_pred HhCCCC----cEEEEEecCCchhhHHHHHHhhCCCCHHHHHHhhh
Confidence 765431 22233333 3455566667777755443344433
No 67
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=63.24 E-value=10 Score=39.42 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=18.8
Q ss_pred eEEEEEEeCCCceEEEEEEEeCCC
Q 016445 79 KYGVLLDGGSTGTRIHVFSYDTET 102 (389)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~~ 102 (389)
+|++.||+|+|+..+++++...++
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G~ 24 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETGE 24 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT--
T ss_pred CEEEEEEcchhheeeEEEECCCCC
Confidence 589999999999999999987644
No 68
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=62.24 E-value=25 Score=37.01 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=32.1
Q ss_pred EEEEEEeCCCceEEEEEEEeCCCCceeeccceee---cCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 016445 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k---~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ 142 (389)
|.+.||+|+|++|+.|+.- .++ .+.......+ ..+|- ...+++...+.+..+++.+.+.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~-~g~-i~~~~~~~~~~~~~~~g~--~e~d~~~~~~~~~~~i~~~~~~ 62 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE-NGK-IVAKSSIGYPLYTPASGM--AEENPEEIFEAVLVTIREVSIN 62 (505)
T ss_pred CEEEEeccccceEEEEEcC-CCC-EEEEEEeecccccCCCCC--eeeCHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999974 222 2221111111 11222 2236666666665555555443
No 69
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=62.22 E-value=15 Score=30.11 Aligned_cols=11 Identities=36% Similarity=0.468 Sum_probs=6.5
Q ss_pred CCCcccccCCC
Q 016445 14 MDPIKLHTRPL 24 (389)
Q Consensus 14 ~~~~~~~~~~~ 24 (389)
||+.+.++.|+
T Consensus 1 M~~~~~~~~~~ 11 (91)
T PF01708_consen 1 MDSAKYQPFPS 11 (91)
T ss_pred CCcccccCCCC
Confidence 66666666543
No 70
>PRK15027 xylulokinase; Provisional
Probab=61.99 E-value=28 Score=36.52 Aligned_cols=58 Identities=9% Similarity=0.077 Sum_probs=33.7
Q ss_pred EEEEEeCCCceEEEEEEEeCCCCceeeccceee---cCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 016445 81 GVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (389)
Q Consensus 81 ~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k---~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ 142 (389)
.+.||+|++++|..||.- .++ .+........ ..|| ....+|+...+.+..+++.+.+.
T Consensus 2 ~lgID~GTts~Ka~l~d~-~G~-vva~~~~~~~~~~~~~g--~~eqd~~~~w~~~~~~~~~l~~~ 62 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE-QGE-VVASQTEKLTVSRPHPL--WSEQDPEQWWQATDRAMKALGDQ 62 (484)
T ss_pred EEEEEecccceEEEEEcC-CCC-EEEEEeecccccCCCCC--ccccCHHHHHHHHHHHHHHHHHh
Confidence 468999999999999983 333 2221011111 2233 23447777767777666665543
No 71
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=59.60 E-value=26 Score=36.77 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=33.5
Q ss_pred EEEEEEeCCCceEEEEEEEeCCCCceeeccceee---cCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 016445 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k---~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ 142 (389)
|.+.||+|++++|+.+|.-+ ++ .+........ -.+|.. ..+++...+.+..+++.+.+.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~-g~-~l~~~~~~~~~~~~~~g~~--e~d~~~~~~~i~~~i~~~~~~ 63 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKD-GN-IVAIHQKEFTQIFPKPGWV--EHDPMEIWESVLSCIAEALAK 63 (493)
T ss_pred eEEEEecCCCceEEEEECCC-CC-EEEEEeeeccccCCCCCcE--eeCHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999833 32 2221011111 123322 236777666666666655443
No 72
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=58.88 E-value=1.4e+02 Score=32.52 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=55.5
Q ss_pred cchH-HHHHHHHHHHHHHhCCCCCCCCceEEEEEehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhh
Q 016445 125 PTNA-GDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVY 203 (389)
Q Consensus 125 ~~~a-~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y 203 (389)
|+.+ ...|..|.+.|...++.. .+.+.+-=-|-. ...++++..++.+ ..||. .+|+|+---=|.|
T Consensus 97 ~eeisa~~L~~lk~~ae~~lg~~---v~~~VItVPayF---~d~qR~at~~A~~----iaGl~----vlrlinEPtAAAl 162 (579)
T COG0443 97 PEEISAMILTKLKEDAEAYLGEK---VTDAVITVPAYF---NDAQRQATKDAAR----IAGLN----VLRLINEPTAAAL 162 (579)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC---cceEEEEeCCCC---CHHHHHHHHHHHH----HcCCC----eEEEecchHHHHH
Confidence 4444 467788888888876533 333333322221 1234444444433 34775 5788887766666
Q ss_pred hHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeecC
Q 016445 204 AWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSD 240 (389)
Q Consensus 204 ~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~~ 240 (389)
+|- +. .....++.|+|+|||.+-++...-
T Consensus 163 ayg-----~~---~~~~~~vlV~DlGGGTfDvSll~~ 191 (579)
T COG0443 163 AYG-----LD---KGKEKTVLVYDLGGGTFDVSLLEI 191 (579)
T ss_pred HhH-----hc---cCCCcEEEEEEcCCCCEEEEEEEE
Confidence 652 22 112457899999999999988754
No 73
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=57.31 E-value=25 Score=36.54 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=32.8
Q ss_pred EEEEeCCCceEEEEEEEeCCCCceeeccceeecCCCCccc----CCCcchHHHHHHHHHHHHHH
Q 016445 82 VLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSY----AVNPTNAGDSLKDLLDFAKR 141 (389)
Q Consensus 82 vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k~~pGLss~----~~~~~~a~~~l~~Ll~~a~~ 141 (389)
+.||+|+|++|+.++.++.+...+.. ....+..++...- ..+++...+.+...++.+..
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTL-EEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEE-EEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 36999999999999998853112210 1122333333221 12555566666666655543
No 74
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=56.83 E-value=12 Score=31.58 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=30.0
Q ss_pred EEEEEeCCCceEEEEEEEeCCCCceee-ccceeecCCCCcc-cCCCcchHHHHHHHHHHHHHHh
Q 016445 81 GVLLDGGSTGTRIHVFSYDTETNHFDF-DLGSMRLNPGLSS-YAVNPTNAGDSLKDLLDFAKRK 142 (389)
Q Consensus 81 ~vVIDaGSsgtRl~Vy~~~~~~~~l~~-~~~~~k~~pGLss-~~~~~~~a~~~l~~Ll~~a~~~ 142 (389)
.++||+||+.|++.||+..... .+.. ..... -..|+.. ...|.+++.+.|+..++.|++.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~-~~~vl~~g~~-~s~gi~~g~Itd~~~i~~~i~~a~~~AE~~ 62 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDG-YIRVLGVGEV-PSKGIKGGHITDIEDISKAIKIAIEEAERL 62 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEE-EEEEES-----------HHHHH--HHHHHHHT--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCC-cEEEEEEecc-cccccCCCEEEEHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999864311 1110 00101 1123322 2236778888888877777765
No 75
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=55.62 E-value=86 Score=32.61 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=58.9
Q ss_pred eEEEEEEeCCCceEEEEEEEeCCCCceeeccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEEe
Q 016445 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMAT 158 (389)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~AT 158 (389)
.|.+=||+||++|.+.+.+ .+ ..+.. ...| .....+.+.+.++.+++.+.. ....-..+.+|
T Consensus 144 g~~lGIDiGSTttK~Vl~d--d~-~Ii~~-----~~~~----t~~~~~~a~~~l~~~l~~~Gl------~~~di~~i~~T 205 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVME--DN-EVIGT-----GWVP----TTKVIESAEEAVERALEEAGV------SLEDVEAIGTT 205 (404)
T ss_pred CEEEEEEcChhheeeEEEc--CC-eEEEE-----EEee----cccHHHHHHHHHHHHHHHcCC------CccceeEEEee
Confidence 3677899999999999985 22 23321 1111 011133344455554444321 12334567778
Q ss_pred hhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEee
Q 016445 159 AGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFV 238 (389)
Q Consensus 159 AGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~ 238 (389)
..=|.+ + ...+.. .+ + .+|-.---.|+.|+... ..+...||||||=-+-+...
T Consensus 206 GyGR~~-------i----~~~~~a-d~------i-----v~EItaha~GA~~L~p~----~~~v~TIIDIGGQDsK~I~l 258 (404)
T TIGR03286 206 GYGRFT-------I----GEHFGA-DL------I-----QEELTVNSKGAVYLADK----QEGPATVIDIGGMDNKAISV 258 (404)
T ss_pred eecHHH-------H----hhhcCC-Cc------e-----EEEEhhHHHHHHHhccc----CCCCcEEEEeCCCceEEEEE
Confidence 865553 1 111100 11 1 33444455677777531 11356899999965555444
No 76
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=53.28 E-value=41 Score=35.93 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=32.5
Q ss_pred EEEEEeCCCceEEEEEEEeCCCCceeeccceee---cCCCCcccCCCcchHHHHHHHHHHHHHH
Q 016445 81 GVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (389)
Q Consensus 81 ~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k---~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (389)
.+.||+|+|++|+.||.-+ ++ .+.......+ ..+|.. ..+|+...+.+..+++.+.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~-G~-i~~~~~~~~~~~~~~~g~~--eqdp~~~~~~~~~~i~~~~~ 61 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST-GD-ILALAAQNIKTWTPSSGLE--GQSSVYIWQAICNCVKQVLA 61 (541)
T ss_pred EEEEEecCcCEEEEEEcCC-CC-EEEEEEeeeeeccCCCCcc--cCCHHHHHHHHHHHHHHHHH
Confidence 3679999999999999743 22 3321011111 223432 34777776666666555544
No 77
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=52.53 E-value=32 Score=32.68 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=35.1
Q ss_pred HHHHhcccCCCCCCCceeEEeeCCCeeEEEeecCCCCCccceeeEEecceeEEEEEeecccccHHHHHH
Q 016445 207 VANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFE 275 (389)
Q Consensus 207 avNy~lg~l~~~~~~t~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~~~~lYs~SfLg~G~~~ar~ 275 (389)
++.++|+ .+..+++|+|||-|-|+-....+.- ++-.-.-+|++..|--.-+-|--..+|.+
T Consensus 132 Aaa~vL~------l~dg~VVDiGGGTTGIsi~kkGkVi--y~ADEpTGGtHmtLvlAG~ygi~~EeAE~ 192 (277)
T COG4820 132 AAADVLQ------LDDGGVVDIGGGTTGISIVKKGKVI--YSADEPTGGTHMTLVLAGNYGISLEEAEQ 192 (277)
T ss_pred hHHHHhc------cCCCcEEEeCCCcceeEEEEcCcEE--EeccCCCCceeEEEEEecccCcCHhHHHH
Confidence 5556664 3567899999999999887654310 00001124444454444444555666643
No 78
>PRK00047 glpK glycerol kinase; Provisional
Probab=52.40 E-value=43 Score=35.24 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=32.5
Q ss_pred eEEEEEEeCCCceEEEEEEEeCCCCceeeccceee---cCCCCcccCCCcchHHHHHHHHHHHHH
Q 016445 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAK 140 (389)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k---~~pGLss~~~~~~~a~~~l~~Ll~~a~ 140 (389)
.|.+.||+|++++|..+|..+. + .+........ ..+|.. ..+|+...+.+..+++.+.
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~~g-~-~~~~~~~~~~~~~~~~g~~--e~d~~~~~~~~~~~~~~~~ 65 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDHDG-N-IVSVAQKEFTQIFPQPGWV--EHDPNEIWASQLSVIAEAL 65 (498)
T ss_pred CEEEEEecCCCceEEEEECCCC-C-EEEEEeeeccccCCCCCeE--eeCHHHHHHHHHHHHHHHH
Confidence 4778899999999999997442 2 2221001111 123332 2367666655555555544
No 79
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=51.62 E-value=95 Score=30.68 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=16.5
Q ss_pred CceeEEeeCCCeeEEEeecC
Q 016445 221 ETTGIIELGGASVQVTFVSD 240 (389)
Q Consensus 221 ~t~giiDlGGaStQIaf~~~ 240 (389)
.+..++|+|||.|+++....
T Consensus 150 ~~~lVvDiG~gttdvs~v~~ 169 (333)
T TIGR00904 150 TGSMVVDIGGGTTEVAVISL 169 (333)
T ss_pred ceEEEEEcCCCeEEEEEEEe
Confidence 34679999999999998743
No 80
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=50.66 E-value=1.9e+02 Score=28.24 Aligned_cols=111 Identities=16% Similarity=0.103 Sum_probs=58.9
Q ss_pred EEEEEEeCCCceEEEEEEEeCCC-CceeeccceeecCCCCcccCCCc-chHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Q 016445 80 YGVLLDGGSTGTRIHVFSYDTET-NHFDFDLGSMRLNPGLSSYAVNP-TNAGDSLKDLLDFAKRKVPPAFWADTEIRLMA 157 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~-~~l~~~~~~~k~~pGLss~~~~~-~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~A 157 (389)
+.+=||+||++|...|.+-+.++ ..+. ....+.. ..+| +.+.+.|+.+++.+.. ....-.++.+
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~l~~~~~~~g~------~~~~i~~i~~ 67 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLA--KRNDRIR------QRDPFKLAEDAYDDLLEEAGL------AAADVAYCAT 67 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEE--EEEecCC------CCCHHHHHHHHHHHHHHHcCC------ChhheEEEEE
Confidence 34679999999999999643211 0111 0111111 1133 2334455555443321 1134567788
Q ss_pred ehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEe
Q 016445 158 TAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTF 237 (389)
Q Consensus 158 TAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf 237 (389)
|.-=|.++. .+..+. |-.---.++.|+.. +...||||||=-+-+..
T Consensus 68 TGYGR~~~~---------------------a~~~vt------EIt~ha~GA~~~~p-------~~~tIiDIGGQD~K~I~ 113 (262)
T TIGR02261 68 TGEGESLAF---------------------HTGHFY------SMTTHARGAIYLNP-------EARAVLDIGALHGRAIR 113 (262)
T ss_pred ECCchhhhh---------------------hcCCee------EEeHHHHHHHHHCC-------CCCEEEEeCCCceEEEE
Confidence 886555421 000111 44445566777642 35589999998888766
Q ss_pred e
Q 016445 238 V 238 (389)
Q Consensus 238 ~ 238 (389)
.
T Consensus 114 ~ 114 (262)
T TIGR02261 114 M 114 (262)
T ss_pred E
Confidence 5
No 81
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=46.77 E-value=64 Score=34.28 Aligned_cols=61 Identities=25% Similarity=0.320 Sum_probs=38.3
Q ss_pred ceEEEEEEeCCCceEEEEEEEeCCCCceeeccceeec--CCCCcccCCCcchHHHHHHHHHHHHHH
Q 016445 78 VKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRL--NPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (389)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k~--~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (389)
..|.+.||.|.|++|..||.-+.+.-... +....+. +||-. ..||..+.+.....+..|..
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~-q~e~~Q~yP~~GWV--EhDp~eIw~~~~~~l~~a~~ 66 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIA-QREFTQIYPQPGWV--EHDPLEIWASVRSVLKEALA 66 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhh-hhhhhhhCCCCCcc--ccCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999997553211110 1112222 45544 34888887777666665543
No 82
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=44.82 E-value=2.8e+02 Score=28.45 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=69.1
Q ss_pred EEEEEEeCCCceEEEEEEEeCC-------CCceee--ccceeec----CCCCcccCCCcchHHHHHHHHH--HHHHHhCC
Q 016445 80 YGVLLDGGSTGTRIHVFSYDTE-------TNHFDF--DLGSMRL----NPGLSSYAVNPTNAGDSLKDLL--DFAKRKVP 144 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~-------~~~l~~--~~~~~k~----~pGLss~~~~~~~a~~~l~~Ll--~~a~~~vp 144 (389)
-.|=||+|.+.|.+..-+.+-. -|.+++ +..+.+- .|=++.-.-+ ...++.++ ++.+.-+.
T Consensus 6 lSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi~~rS~i~FTPv~~q~~id----~~alk~~v~eeY~~AGi~ 81 (473)
T COG4819 6 LSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDISWRSPIFFTPVDKQGGID----EAALKKLVLEEYQAAGIA 81 (473)
T ss_pred eeeeeeccCceeeeeeeeeEEeecccccccceEEEEecceeeecceeeeeecccCCcc----HHHHHHHHHHHHHHcCCC
Confidence 3578999999999877665531 133322 0111110 1111111111 23445443 34444443
Q ss_pred CCCCCCceEEE-EEehhhcccchhcHHHHHHHHHHHhhccCccc---cCCceEEcCCccchhhhHHHHHHhcccCCCCCC
Q 016445 145 PAFWADTEIRL-MATAGLRLVDVVVQDKILDSCRRVLRVSGFRF---ADDWATVITGSDEGVYAWIVANYALGTLGGDPS 220 (389)
Q Consensus 145 ~~~~~~tpv~l-~ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f---~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~ 220 (389)
++....-.|.+ .-||-- .|...+++.+...+. .|.. ..+-=.||-|.--|.-.+- . ..
T Consensus 82 pesi~sGAvIITGEtArk-----~NA~~vl~alSg~aG--DFVVAtAGPdLESiIAGkGaGA~t~S----------e-qr 143 (473)
T COG4819 82 PESIDSGAVIITGETARK-----RNARPVLMALSGSAG--DFVVATAGPDLESIIAGKGAGAQTLS----------E-QR 143 (473)
T ss_pred hhccccccEEEecccccc-----ccchHHHHHhhhccc--ceEEEecCCCHHHHhccCCccccchh----------h-hh
Confidence 34333334443 334422 456667777766553 3432 1112256666554433321 1 12
Q ss_pred Cc-eeEEeeCCCeeEEEeecCCC
Q 016445 221 ET-TGIIELGGASVQVTFVSDEP 242 (389)
Q Consensus 221 ~t-~giiDlGGaStQIaf~~~~~ 242 (389)
.+ +.-+|||||-|-+++.....
T Consensus 144 ~t~v~NlDIGGGTtN~slFD~Gk 166 (473)
T COG4819 144 LTRVLNLDIGGGTTNYSLFDAGK 166 (473)
T ss_pred ceEEEEEeccCCccceeeecccc
Confidence 23 44699999999999986544
No 83
>PTZ00288 glucokinase 1; Provisional
Probab=42.05 E-value=1.3e+02 Score=31.18 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=38.8
Q ss_pred CCceEEEEEEeCCCceEEEEEEEeCCC-CceeeccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCC
Q 016445 76 SSVKYGVLLDGGSTGTRIHVFSYDTET-NHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVP 144 (389)
Q Consensus 76 ~~~~y~vVIDaGSsgtRl~Vy~~~~~~-~~l~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp 144 (389)
....|.+.+|+|-|++|+-+|+..+.. .... ....+ +.-.+.+..+..+.+..+++..++..|
T Consensus 23 ~~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (405)
T PTZ00288 23 SSGPIFVGCDVGGTNARVGFAREVQHDDSGVH--IIYVR----FNVTKTDIRELLEFFDEVLQKLKKNLS 86 (405)
T ss_pred ccCCeEEEEEecCCceEEEEEeccCCCCCcee--EEEEe----cccccccHHHHHHHHHHHHHHHHhcCc
Confidence 345788999999999999999984321 1111 01111 111133455566777778887777654
No 84
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=41.83 E-value=2.9e+02 Score=27.18 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=25.6
Q ss_pred ccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeec
Q 016445 198 SDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (389)
Q Consensus 198 ~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~ 239 (389)
.||-.-.-.|+++++......+.....+++||-| +-|.++.
T Consensus 78 ~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsG-vSi~~v~ 118 (279)
T TIGR00555 78 FDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTG-TSILYVD 118 (279)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCceEEEEecCC-eEEEEEc
Confidence 3466667778888864331122345689999655 6677764
No 85
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=40.82 E-value=29 Score=37.03 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=24.9
Q ss_pred CCCCceEEEEEEeCCCceEEEEEEEeCCC
Q 016445 74 PPSSVKYGVLLDGGSTGTRIHVFSYDTET 102 (389)
Q Consensus 74 ~~~~~~y~vVIDaGSsgtRl~Vy~~~~~~ 102 (389)
.-....|+|.+|.|||+.|.|+-....++
T Consensus 159 g~~~~~YGvAvDlGTS~i~aqlVDL~sge 187 (614)
T COG3894 159 GLKNEAYGVAVDLGTSGIRAQLVDLKSGE 187 (614)
T ss_pred CccceeeeeEEecccceeeeEEEeccCCc
Confidence 33678999999999999999999988743
No 86
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=40.33 E-value=1.2e+02 Score=30.44 Aligned_cols=85 Identities=9% Similarity=0.126 Sum_probs=49.0
Q ss_pred ceEEEEEehhhcccchhcHHH---HHHHHHHHhhccCccccCCceEEcCCccchhh-------hHHH-HHHhcccCCCCC
Q 016445 151 TEIRLMATAGLRLVDVVVQDK---ILDSCRRVLRVSGFRFADDWATVITGSDEGVY-------AWIV-ANYALGTLGGDP 219 (389)
Q Consensus 151 tpv~l~ATAGmR~l~~~~~~~---il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y-------~Wla-vNy~lg~l~~~~ 219 (389)
..+-+.=|+-|=+.=+..++- |++.+++.+.. ++.|-.++-.+++-++=..+ +|++ +.++ +..
T Consensus 53 ~~~avtMTgELaD~f~~r~~GV~~i~~~~~~~~~~-~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~l-a~~---- 126 (318)
T TIGR03123 53 DNVAVTMTGELADCFEDKAEGVEFILAAVESAFGS-PVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLI-AKR---- 126 (318)
T ss_pred ceEEEEeehhhhhhhcCHHHHHHHHHHHHHHhcCC-CeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHH-Hhc----
Confidence 467777888887654444444 46677776632 34332111222221111111 6887 5544 332
Q ss_pred CCceeEEeeCCCeeEEEeecCC
Q 016445 220 SETTGIIELGGASVQVTFVSDE 241 (389)
Q Consensus 220 ~~t~giiDlGGaStQIaf~~~~ 241 (389)
.+...++||||-||-|+...+.
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G 148 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDG 148 (318)
T ss_pred CCCEEEEEcCccceeeEEecCC
Confidence 3457899999999999998654
No 87
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=38.88 E-value=1.2e+02 Score=30.64 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCC-CCCCCCceEEEEEeh-hhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHH
Q 016445 130 DSLKDLLDFAKRKVP-PAFWADTEIRLMATA-GLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIV 207 (389)
Q Consensus 130 ~~l~~Ll~~a~~~vp-~~~~~~tpv~l~ATA-GmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~Wla 207 (389)
+....++..+-+.+- .......|..+.++. |. ..-.+.++.++.++.- -. .+-+| ||..=+-++
T Consensus 79 ~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~---T~VErrAi~ea~~~aG----a~----~V~li---eEp~aAAIG 144 (342)
T COG1077 79 EVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGI---TDVERRAIKEAAESAG----AR----EVYLI---EEPMAAAIG 144 (342)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCc---cHHHHHHHHHHHHhcc----Cc----eEEEe---ccHHHHHhc
Confidence 344555555544432 222134555555544 43 2346777777777643 21 24444 355545555
Q ss_pred HHHhcccCCCCCCCceeEEeeCCCeeEEEeecC
Q 016445 208 ANYALGTLGGDPSETTGIIELGGASVQVTFVSD 240 (389)
Q Consensus 208 vNy~lg~l~~~~~~t~giiDlGGaStQIaf~~~ 240 (389)
+.-... .+ .-.-++|||||.|+++..+-
T Consensus 145 aglpi~----ep-~G~mvvDIGgGTTevaVISl 172 (342)
T COG1077 145 AGLPIM----EP-TGSMVVDIGGGTTEVAVISL 172 (342)
T ss_pred CCCccc----CC-CCCEEEEeCCCceeEEEEEe
Confidence 433221 12 11348999999999998754
No 88
>PRK03011 butyrate kinase; Provisional
Probab=36.29 E-value=47 Score=33.80 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=33.7
Q ss_pred EEEEEEeCCCceEEEEEEEeCCCCceeeccceeecCCCCcccCCCcchHHHHHHHHHHHHHH
Q 016445 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (389)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (389)
...||.-|||||++-||+ .+++.++ +...--...|+.|..-.++..-..+.++++.++
T Consensus 3 ~il~inpgststk~a~~~--~~~~~~~--~~~~h~~~~~~~~~~~~~q~~~r~~~i~~~l~~ 60 (358)
T PRK03011 3 RILVINPGSTSTKIAVFE--DEKPIFE--ETLRHSAEELEKFKTIIDQYEFRKQAILDFLKE 60 (358)
T ss_pred EEEEEcCCCchheEEEEc--CCceeee--eccccCHHHHhcCCCccchHHHHHHHHHHHHHH
Confidence 468999999999999995 3333332 111111234666666555555455555555544
No 89
>PRK09213 pur operon repressor; Provisional
Probab=35.15 E-value=60 Score=31.89 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=44.3
Q ss_pred CcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEEehhhcccch---hcHHHHHHHHHHHhhccC
Q 016445 118 LSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDV---VVQDKILDSCRRVLRVSG 184 (389)
Q Consensus 118 Lss~~~~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATAGmR~l~~---~~~~~il~~vr~~l~~s~ 184 (389)
|+.|++.-+.|..+|.+=+...++.......+.-...-.|..|.|-.|. ++.+++++.+.+.|.+..
T Consensus 26 l~~f~~~~~~aks~ised~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~a~~~~~~L~~~L~~~~ 95 (271)
T PRK09213 26 LTFFAERYGAAKSSISEDLVIIKETFEKQGIGTLETVPGAAGGVKYIPSISEEEAREFVEELCERLSEPD 95 (271)
T ss_pred HHHHHHHhccccchhhhhHHHHHHHHHhcCCceEEEeCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHhCC
Confidence 5555554455555555444444444434556667788899999999884 668889998888886533
No 90
>PHA02819 hypothetical protein; Provisional
Probab=34.76 E-value=58 Score=25.46 Aligned_cols=9 Identities=44% Similarity=0.265 Sum_probs=3.2
Q ss_pred CCCCCCCCC
Q 016445 33 RNPKPTKSN 41 (389)
Q Consensus 33 ~~~~~~~~~ 41 (389)
|+.+..++.
T Consensus 36 ~~~~~~~~~ 44 (71)
T PHA02819 36 YNKKTKKSF 44 (71)
T ss_pred CcccccCCh
Confidence 333333333
No 91
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=33.20 E-value=1.3e+02 Score=32.40 Aligned_cols=81 Identities=17% Similarity=0.096 Sum_probs=44.9
Q ss_pred ceEEEEEEeCCCceEEEEEEEeCCCCceee---ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEE
Q 016445 78 VKYGVLLDGGSTGTRIHVFSYDTETNHFDF---DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIR 154 (389)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~~~~~~l~~---~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~ 154 (389)
..|.|-||.||.|-|..||....+. .+.. .....+..+.+. ..++++..+.+...+..+.+..-.+.....-|=
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~-~la~a~~p~~~~~~~~~~~--~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIG 78 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGT-LLARAVRPYPMWQPGSNLA--EQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIG 78 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCc-chhhcccceeccccCcccc--ccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEE
Confidence 4789999999999999999988543 1210 111223344443 346776666665555544333211222233444
Q ss_pred EEEehhh
Q 016445 155 LMATAGL 161 (389)
Q Consensus 155 l~ATAGm 161 (389)
+=||..|
T Consensus 79 vDaTcSl 85 (544)
T COG1069 79 VDATCSL 85 (544)
T ss_pred Ecceeee
Confidence 4555433
No 92
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=29.84 E-value=1.4e+02 Score=30.85 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=30.2
Q ss_pred EEEEeCCCceEEEEEEEeCCCCceeecccee---ecCCCCcccCCCcchHHHHHHHHHHHHHH
Q 016445 82 VLLDGGSTGTRIHVFSYDTETNHFDFDLGSM---RLNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (389)
Q Consensus 82 vVIDaGSsgtRl~Vy~~~~~~~~l~~~~~~~---k~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (389)
+.||+|++++|+.|+..+ ++ .+....... ...||-. ..+++...+.+..+++.+.+
T Consensus 1 lgIDiGtt~ik~~l~d~~-g~-i~~~~~~~~~~~~~~~g~~--e~d~~~~~~~l~~~i~~~~~ 59 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQ-GE-VIASGSAPHTVISPHPGWS--EQDPEDWWDATEEAIKELLE 59 (481)
T ss_pred CceeecCcceEEEEECCC-CC-EEEEEeecccccCCCCCCe--eeCHHHHHHHHHHHHHHHHH
Confidence 369999999999999843 22 221101111 1223422 23566655556666555443
No 93
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=29.36 E-value=73 Score=28.41 Aligned_cols=18 Identities=28% Similarity=0.660 Sum_probs=13.5
Q ss_pred CCCCCCceEEEEEEeCCC
Q 016445 72 SFPPSSVKYGVLLDGGST 89 (389)
Q Consensus 72 ~~~~~~~~y~vVIDaGSs 89 (389)
..-+...+|.+|.|-|++
T Consensus 64 ~~IpGA~~~~~VyDnG~~ 81 (145)
T PF10726_consen 64 VVIPGAVRYPIVYDNGAD 81 (145)
T ss_pred ccccCceEeeEEEECCCc
Confidence 335567799999998875
No 94
>PLN03160 uncharacterized protein; Provisional
Probab=29.07 E-value=82 Score=29.75 Aligned_cols=18 Identities=11% Similarity=-0.077 Sum_probs=7.2
Q ss_pred CCCCCchhHHHHHHHHHH
Q 016445 39 KSNPSSFAIPIALTATLI 56 (389)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~ 56 (389)
+|..|..|+.+++++|++
T Consensus 35 ~~~~c~~~~~a~~l~l~~ 52 (219)
T PLN03160 35 NCIKCCGCITATLLILAT 52 (219)
T ss_pred cceEEHHHHHHHHHHHHH
Confidence 333344443333333333
No 95
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=28.09 E-value=30 Score=32.93 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=10.7
Q ss_pred CCCCCCCCCchhHHHHHHHHHH
Q 016445 35 PKPTKSNPSSFAIPIALTATLI 56 (389)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~ 56 (389)
.+++|.+ ++|.|+|++++|+|
T Consensus 7 ~KrRK~N-~iLNiaI~IV~lLI 27 (217)
T PF07423_consen 7 QKRRKTN-KILNIAIGIVSLLI 27 (217)
T ss_pred HHhhhhh-hhHHHHHHHHHHHH
Confidence 3455555 56665445444444
No 96
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=26.10 E-value=2.5e+02 Score=27.82 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=39.8
Q ss_pred ceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCCeeEEEeecCCCCCccceeeEEecceeEEEEEeecccccH
Q 016445 191 WATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQ 270 (389)
Q Consensus 191 ~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGaStQIaf~~~~~~~~~~~~~~~l~~~~~~lYs~SfLg~G~ 270 (389)
.+.|++ |++=+|+..--- +. ..+..+|||+||..+.++..... .+. .--.+..+..|.
T Consensus 142 ~V~V~P---Q~~~A~~~~~~~---~~--~~~~~lVVDIGG~T~Dv~~v~~~-~~~-------------~~~~~~~~~~Gv 199 (318)
T PF06406_consen 142 DVEVFP---QSVGAVFDALMD---LD--EDESVLVVDIGGRTTDVAVVRGG-LPD-------------ISKCSGTPEIGV 199 (318)
T ss_dssp EEEEEE---SSHHHHHHHHHT---S---TTSEEEEEEE-SS-EEEEEEEGG-G---------------EEEEEEETTSST
T ss_pred eEEEEc---ccHHHHHHHHHh---hc--ccCcEEEEEcCCCeEEeeeecCC-ccc-------------cchhccCCchhH
Confidence 366664 555554443222 22 23568999999999999876432 100 011234457888
Q ss_pred HHHHHHHHHHhhc
Q 016445 271 NVAFETLRELLSS 283 (389)
Q Consensus 271 ~~ar~~~~~~l~~ 283 (389)
..+.+++.+.|.+
T Consensus 200 s~~~~~I~~~l~~ 212 (318)
T PF06406_consen 200 SDLYDAIAQALRS 212 (318)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877655
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=25.97 E-value=38 Score=28.22 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=22.9
Q ss_pred hhcccchhcHHHHHHHHHHHhhccCccccCC--ceEEcCCccchhh
Q 016445 160 GLRLVDVVVQDKILDSCRRVLRVSGFRFADD--WATVITGSDEGVY 203 (389)
Q Consensus 160 GmR~l~~~~~~~il~~vr~~l~~s~f~f~~~--~i~VIsG~eEg~y 203 (389)
=+|.-.++.++.+++.+... ...+....+. .++||+|+||-.|
T Consensus 41 ~VRf~~~~~A~~a~~~~~~~-~~~~~~i~~~~~~~~vLeGeeE~~Y 85 (105)
T PF08777_consen 41 YVRFKTPEAAQKALEKLKEA-NDGKLKIKGKEVTLEVLEGEEEEEY 85 (105)
T ss_dssp EEEESS---HHHHHHHHHHT-TTS-B-TTSSSEEEE---HHHHHHH
T ss_pred EEEECCcchHHHHHHHHHhc-cCCceEEcCceEEEEECCCHHHHHH
Confidence 34555455678888888876 2234444333 3699999999887
No 98
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=23.27 E-value=4.1e+02 Score=27.93 Aligned_cols=86 Identities=22% Similarity=0.207 Sum_probs=51.0
Q ss_pred eEEEEEehhhcccchhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhhHHHHHHhcccCCCCCCCceeEEeeCCC
Q 016445 152 EIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGA 231 (389)
Q Consensus 152 pv~l~ATAGmR~l~~~~~~~il~~vr~~l~~s~f~f~~~~i~VIsG~eEg~y~WlavNy~lg~l~~~~~~t~giiDlGGa 231 (389)
..-++.|.....- .++++.+.+.+-+.+.--++.+- ..-+.+.|..|... .+..|||+|-+
T Consensus 106 ~~pllltep~~n~-~~~re~~~e~~fE~~~vp~~~~~--------------~~~~l~~ya~g~~~----~~g~ViD~G~~ 166 (444)
T COG5277 106 EHPLLLTEPPLNP-PSNREKITELLFETLNVPALYLA--------------IQAVLSLYASGSSD----ETGLVIDSGDS 166 (444)
T ss_pred CCceEEeccCCCc-HHHHHHHHHHHHHhcCCcceEee--------------HHHHHHHHhcCCCC----CceEEEEcCCC
Confidence 3445667765553 47888888877776532233210 13455567766421 36679999999
Q ss_pred eeEEEeecCCCCCccceeeEEecce
Q 016445 232 SVQVTFVSDEPLPQEFSRTLKFGNV 256 (389)
Q Consensus 232 StQIaf~~~~~~~~~~~~~~~l~~~ 256 (389)
.|-|+=+.+.-.-..-..++.++|.
T Consensus 167 ~t~v~PV~DG~~l~~a~~ri~~gG~ 191 (444)
T COG5277 167 VTHVIPVVDGIVLPKAVKRIDIGGR 191 (444)
T ss_pred ceeeEeeeccccccccceeeecCcH
Confidence 9999877665433333445555654
No 99
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=22.80 E-value=1.2e+02 Score=29.71 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=44.5
Q ss_pred CcccCCCcchHHHHHHHHHHHHHHhCCCCCCCCceEEEEEehhhcccch---hcHHHHHHHHHHHhhccC
Q 016445 118 LSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDV---VVQDKILDSCRRVLRVSG 184 (389)
Q Consensus 118 Lss~~~~~~~a~~~l~~Ll~~a~~~vp~~~~~~tpv~l~ATAGmR~l~~---~~~~~il~~vr~~l~~s~ 184 (389)
|+.|++.-+.|..+|.+=+...++.......+.-...-.|..|.|-.|. ++.+++++.+.+.|.+.+
T Consensus 24 l~~f~~~~~~aks~ised~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~~~~~~~~l~~~l~~~~ 93 (268)
T TIGR01743 24 LNFFSERYESAKSSISEDIVIIKETFEKFGIGKLLTVPGAAGGVKYIPKMSQAEAEEFVEELCQSLSEPE 93 (268)
T ss_pred HHHHHHHhccccchhhhhHHHHHHHHHhcCCceEEEeCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHCC
Confidence 4555554455555555444444444434556667788899999999884 567889999988887644
No 100
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=22.49 E-value=1.1e+02 Score=29.93 Aligned_cols=22 Identities=18% Similarity=0.588 Sum_probs=16.4
Q ss_pred CCceeEEeeCCCeeEEEeecCC
Q 016445 220 SETTGIIELGGASVQVTFVSDE 241 (389)
Q Consensus 220 ~~t~giiDlGGaStQIaf~~~~ 241 (389)
.++..++||||-||-|+...+.
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~~G 97 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIKDG 97 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEETT
T ss_pred CCCEEEEeCCCCEEEEEEEECC
Confidence 3578899999999999998754
No 101
>PHA02692 hypothetical protein; Provisional
Probab=22.30 E-value=1.3e+02 Score=23.53 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.4
Q ss_pred CCCCCC
Q 016445 36 KPTKSN 41 (389)
Q Consensus 36 ~~~~~~ 41 (389)
++.++.
T Consensus 38 ~~~~~~ 43 (70)
T PHA02692 38 DRSKGV 43 (70)
T ss_pred cccCCc
Confidence 333444
No 102
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=20.96 E-value=1.9e+02 Score=27.31 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.2
Q ss_pred CCceEEEEEEeCCCceEEEEE
Q 016445 76 SSVKYGVLLDGGSTGTRIHVF 96 (389)
Q Consensus 76 ~~~~y~vVIDaGSsgtRl~Vy 96 (389)
-...||+|.|.|-+.+|+.|-
T Consensus 142 RdyTyG~VeEv~~~~v~V~V~ 162 (206)
T PF09874_consen 142 RDYTYGVVEEVKENLVRVFVH 162 (206)
T ss_pred ccceeEEEEEecCCEEEEEEc
Confidence 467899999999999888874
No 103
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=20.70 E-value=78 Score=33.05 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=18.5
Q ss_pred eEEEEEEeCCCceEEEEEEEe
Q 016445 79 KYGVLLDGGSTGTRIHVFSYD 99 (389)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~ 99 (389)
.|.+=||+||+.|...|++-.
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~ 22 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDK 22 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCC
Confidence 588899999999999999754
Done!