BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016446
(389 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B7FF12|WDY_DROYA WD repeat-containing protein on Y chromosome OS=Drosophila yakuba
GN=WDY PE=2 SV=2
Length = 1068
Score = 35.0 bits (79), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 234 FIFLYENQLFLTFRNRTVAVWNFRGE-LVTSFED--HLLWHPDCNTNNIYITSDQDLIIS 290
F+ EN+++ + + VW+ L+ ++ D L+ H + + Y + Q+L+++
Sbjct: 374 FVQPEENKVYSVDYQKIIKVWDLHEHTLLQTYGDLVRLIHHSETDMTYYYHSHLQELVVA 433
Query: 291 -------YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 343
C +G+ + VS +L + N +C + TG+
Sbjct: 434 GRKLISIKCCPRVRVDLADGNTHAAPVSVVLYNRLFR--NVVSCGLDSYIIVWDPWTGRR 491
Query: 344 KKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVWS 388
K + KS + + GE ++ +IT+ +D + TG R G + +W+
Sbjct: 492 KIIMKSCHTKMIYGEIIDIEITAACFDPLEQFLLTGARDGSLKIWN 537
>sp|B7FF09|WDY_DROWI WD repeat-containing protein on Y chromosome OS=Drosophila
willistoni GN=WDY PE=4 SV=1
Length = 1089
Score = 35.0 bits (79), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 234 FIFLYENQLFLTFRNRTVAVWNFRGE-LVTSFED--HLLWHPDCNTNNIYITSDQDLIIS 290
F+ EN+++ + + VWN + L+ ++ D L+ H + + Y + ++LI++
Sbjct: 381 FVQPEENKVYSVDYQKIIKVWNLQEHTLLQTYGDLVRLIHHTETDLTYYYHSHLRELIVA 440
Query: 291 -------YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 343
C +G+ + VS +L + N C + TG+
Sbjct: 441 GRKLISIKCCPRVRVDLTDGNTHAAPVSVVLYNRLFR--NIVTCGLDSYIIVWDPWTGRR 498
Query: 344 KKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVW 387
K + KS + + GE ++ +IT+ +D + TG R G + +W
Sbjct: 499 KIIMKSCHTKMIYGETIDIEITAACFDPLEQFLLTGARDGSLKIW 543
>sp|O22469|MSI3_ARATH WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana
GN=MSI3 PE=1 SV=2
Length = 424
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 31/211 (14%)
Query: 28 FSRETNRRICFLNVSP---DEVIRSLFYNKNNDSLITVSVYASDN---FSSL--KCRSTK 79
S ++RIC +VS D+V+ + + + S+I + N F S C+
Sbjct: 186 LSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQLV- 244
Query: 80 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 139
I +R + + E E ++ F+ N VL ++ DS +FDL+ T +
Sbjct: 245 IWDLRTNQMQHQVKVHEREI----NYLSFNPFNEWVLATASSDSTVALFDLRKLTAPLHV 300
Query: 140 SDKH---VQEIKISPG-------------IMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183
KH V +++ P +M+ NR L EDG +F H
Sbjct: 301 LSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSH 360
Query: 184 LLHRNKKVDFIEQFNEKLLVKQ--ENENLQI 212
H+ K DF +E ++ E+ +LQ+
Sbjct: 361 GGHKAKISDFAWNKDEPWVISSVAEDNSLQV 391
>sp|Q8MJ04|RP1_CANFA Oxygen-regulated protein 1 OS=Canis familiaris GN=RP1 PE=2 SV=1
Length = 2141
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 24/134 (17%)
Query: 127 VFDLKNYTM-------LYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 179
V +LKNY++ Y+ SDK + PG + S ++ E
Sbjct: 1415 VAELKNYSLKTFQGKNAYTSSDKEDSKTSEEPGSITNSMTSSERNISELESFEELENQDT 1474
Query: 180 VFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILD----------VRNAELMEVSRTE 227
+H+ KV+ EQ E+L+ K+ ++NLQ++D RN + E R
Sbjct: 1475 DTFHM-----KVNAREQAAEELIQKELEASKNLQLIDGSRRNITEEEERNGIICEAIRRR 1529
Query: 228 FMTPSAFIFLYENQ 241
TP + +F Y+++
Sbjct: 1530 LATPPSLVFCYDSK 1543
>sp|B0FXQ5|WDY_DROAN WD repeat-containing protein on Y chromosome OS=Drosophila
ananassae GN=WDY PE=2 SV=2
Length = 1064
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 234 FIFLYENQLFLTFRNRTVAVWNFRGE-LVTSFED--HLLWHPDCNTNNIYITSDQDLIIS 290
F+ EN+++ + + VW+ + L+ ++ D L+ H + + Y + ++L+++
Sbjct: 369 FVQPEENKVYSVDYQKIIKVWDLQEHTLLQTYGDLVRLIHHSETDLTYYYHSHLRELVVA 428
Query: 291 -------YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 343
C +G+ + VS +L + N C + TG+
Sbjct: 429 GRKLISIKCCPRVRVDLTDGNTHAAPVSVVLYNRLFR--NIVTCGLDSYIIVWDPWTGRR 486
Query: 344 KKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVW 387
K + KS + + GE ++ +IT+ +D + TG R G + +W
Sbjct: 487 KIIMKSCHTKMIYGEIIDIEITAACFDPLEQFLLTGARDGSLKIW 531
>sp|B4F7L9|WDY_DROME WD repeat-containing protein on Y chromosome OS=Drosophila
melanogaster GN=WDY PE=2 SV=2
Length = 1069
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 234 FIFLYENQLFLTFRNRTVAVWNFRGE-LVTSFED--HLLWHPDCNTNNIYITSDQDLIIS 290
F+ EN+++ + + VW+ L+ ++ D L+ H + + Y + ++L+++
Sbjct: 374 FVQPEENKVYSVDYQKIIKVWDLHEHTLLQTYGDLVRLIHHSETDLTYYYHSHLRELVVA 433
Query: 291 -------YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 343
C +G+ + VS +L + N +C + TG+
Sbjct: 434 GRKLISIKCCPRVRVDLTDGNTHAAPVSVVLYNRLFR--NIVSCGLDSYIIVWDPWTGRR 491
Query: 344 KKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVW 387
K + KS + + GE ++ +IT+ +D + TG R G + +W
Sbjct: 492 KIIMKSCHTKMIYGEIIDIEITAACFDPLEQFLLTGARDGSLKIW 536
>sp|B7FF06|WDY_DROGR WD repeat-containing protein on Y chromosome OS=Drosophila
grimshawi GN=WDY PE=4 SV=1
Length = 1171
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 232 SAFIFLYENQLFLTFRNRTVAVWNFR--------GELVTSFEDHLLWHPDCNTNNIYITS 283
+ F+ EN+++ ++ + VW+ + GELV ++ H + + Y +
Sbjct: 381 AVFVQPEENKVYSVDYHKVIKVWDLQEHTLLQTFGELV-----RIIHHSETDIKYYYHSH 435
Query: 284 DQDLIIS-------YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 336
+DL+++ C +G+ + VS +L + N C +
Sbjct: 436 LRDLLVAGRKLIQIKCCPRVRVDLTDGNTHAAPVSVVLYNRLFR--NIVTCGLDSYIIVW 493
Query: 337 SSSTGKSKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVW 387
TG+ K + K+ + + GE ++ +IT+ +D + TG R G + +W
Sbjct: 494 DPWTGRRKIIMKNCHTKMIYGEIIDIEITAACFDPLEQFLLTGARDGSLKIW 545
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,654,420
Number of Sequences: 539616
Number of extensions: 5708130
Number of successful extensions: 16249
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 16237
Number of HSP's gapped (non-prelim): 35
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)