Query 016446
Match_columns 389
No_of_seqs 195 out of 502
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:55:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.9E-55 8.4E-60 425.5 28.6 318 4-388 116-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 7.5E-51 1.6E-55 395.6 25.0 285 33-389 105-438 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-49 2.7E-54 390.8 22.5 280 41-388 172-458 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.4E-46 7.4E-51 366.5 22.8 271 6-312 178-458 (459)
5 KOG0279 G protein beta subunit 100.0 5.7E-42 1.2E-46 322.9 33.2 294 35-388 7-311 (315)
6 KOG0295 WD40 repeat-containing 100.0 5.2E-43 1.1E-47 339.2 24.3 291 2-388 107-404 (406)
7 KOG0286 G-protein beta subunit 100.0 2E-41 4.3E-46 321.0 32.9 285 37-388 49-343 (343)
8 cd00200 WD40 WD40 domain, foun 100.0 1.1E-38 2.3E-43 291.0 37.1 283 36-388 2-289 (289)
9 KOG0266 WD40 repeat-containing 100.0 1.6E-39 3.4E-44 335.4 33.5 291 36-389 151-453 (456)
10 PLN00181 protein SPA1-RELATED; 100.0 1.6E-38 3.4E-43 347.5 41.0 315 22-389 457-792 (793)
11 KOG0319 WD40-repeat-containing 100.0 6.7E-40 1.4E-44 338.9 28.3 350 3-388 107-617 (775)
12 KOG0295 WD40 repeat-containing 100.0 2.3E-40 4.9E-45 320.8 19.5 234 101-389 109-363 (406)
13 KOG0263 Transcription initiati 100.0 4.9E-40 1.1E-44 342.2 23.4 276 33-389 368-648 (707)
14 KOG0315 G-protein beta subunit 100.0 2.8E-38 6.1E-43 294.3 30.8 277 14-326 11-300 (311)
15 KOG0279 G protein beta subunit 100.0 4.6E-38 1E-42 296.5 31.3 278 4-314 16-313 (315)
16 KOG0266 WD40 repeat-containing 100.0 7.3E-38 1.6E-42 323.0 29.5 237 103-389 162-408 (456)
17 KOG0291 WD40-repeat-containing 100.0 2.6E-36 5.6E-41 312.8 39.0 336 4-389 266-611 (893)
18 KOG0291 WD40-repeat-containing 100.0 1.2E-35 2.7E-40 307.7 39.2 354 5-388 147-548 (893)
19 KOG0263 Transcription initiati 100.0 3.1E-37 6.8E-42 321.3 24.2 318 5-379 380-704 (707)
20 KOG0273 Beta-transducin family 100.0 4.3E-36 9.4E-41 298.5 29.0 281 39-388 174-480 (524)
21 cd00200 WD40 WD40 domain, foun 100.0 1.5E-34 3.2E-39 263.6 36.8 274 3-312 9-289 (289)
22 KOG0273 Beta-transducin family 100.0 1.1E-35 2.3E-40 295.7 31.2 304 14-388 192-521 (524)
23 KOG0265 U5 snRNP-specific prot 100.0 1.4E-35 3.1E-40 281.9 27.6 287 35-386 39-334 (338)
24 KOG0285 Pleiotropic regulator 100.0 8.2E-36 1.8E-40 288.8 25.9 296 28-388 137-437 (460)
25 KOG0645 WD40 repeat protein [G 100.0 5E-35 1.1E-39 275.1 30.3 288 35-389 6-310 (312)
26 KOG0286 G-protein beta subunit 100.0 9.7E-35 2.1E-39 275.5 32.4 276 4-312 56-343 (343)
27 KOG0281 Beta-TrCP (transducin 100.0 1.9E-37 4.1E-42 299.3 12.7 273 35-389 186-476 (499)
28 KOG0315 G-protein beta subunit 100.0 2.9E-34 6.2E-39 267.6 28.7 261 58-389 12-287 (311)
29 KOG0319 WD40-repeat-containing 100.0 6.3E-35 1.4E-39 302.1 26.8 276 5-312 325-617 (775)
30 KOG0281 Beta-TrCP (transducin 100.0 2.8E-36 6E-41 291.3 15.5 268 4-318 198-481 (499)
31 KOG0274 Cdc4 and related F-box 100.0 1.2E-34 2.7E-39 303.2 28.3 273 39-389 203-481 (537)
32 PLN00181 protein SPA1-RELATED; 100.0 1.8E-33 3.8E-38 307.7 37.7 274 3-313 483-792 (793)
33 KOG0284 Polyadenylation factor 100.0 2.1E-35 4.6E-40 289.6 16.3 274 45-388 97-378 (464)
34 KOG0285 Pleiotropic regulator 100.0 2.8E-34 6E-39 278.2 21.0 235 97-388 148-387 (460)
35 KOG0274 Cdc4 and related F-box 100.0 2.1E-33 4.5E-38 294.0 27.6 270 11-326 216-494 (537)
36 KOG0276 Vesicle coat complex C 100.0 7.2E-34 1.6E-38 289.9 22.6 233 102-389 15-256 (794)
37 KOG0318 WD40 repeat stress pro 100.0 6.7E-32 1.5E-36 271.5 34.1 308 13-389 160-559 (603)
38 KOG0276 Vesicle coat complex C 100.0 6.2E-33 1.3E-37 283.1 25.7 280 38-386 8-295 (794)
39 KOG0313 Microtubule binding pr 100.0 1E-32 2.2E-37 268.8 25.5 300 5-388 107-416 (423)
40 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 8.3E-31 1.8E-35 247.7 37.9 276 13-325 1-290 (300)
41 KOG0292 Vesicle coat complex C 100.0 1.2E-32 2.5E-37 289.1 26.1 272 44-384 9-316 (1202)
42 KOG0265 U5 snRNP-specific prot 100.0 9.6E-33 2.1E-37 262.6 22.9 239 99-388 46-294 (338)
43 KOG0306 WD40-repeat-containing 100.0 2E-31 4.3E-36 276.5 32.8 319 2-388 64-578 (888)
44 KOG0275 Conserved WD40 repeat- 100.0 1.9E-33 4.2E-38 269.7 16.2 292 34-388 203-507 (508)
45 KOG0282 mRNA splicing factor [ 100.0 3.2E-33 6.9E-38 278.8 17.8 287 34-388 205-503 (503)
46 PTZ00421 coronin; Provisional 100.0 3.1E-31 6.7E-36 276.0 32.6 237 105-389 25-289 (493)
47 KOG0293 WD40 repeat-containing 100.0 3.1E-32 6.7E-37 267.7 22.2 288 34-389 215-512 (519)
48 KOG0292 Vesicle coat complex C 100.0 1.9E-32 4.2E-37 287.5 20.9 233 103-389 12-279 (1202)
49 KOG0316 Conserved WD40 repeat- 100.0 7E-32 1.5E-36 250.1 21.4 234 99-389 16-256 (307)
50 KOG0296 Angio-associated migra 100.0 2E-30 4.4E-35 251.8 31.9 312 6-388 67-396 (399)
51 KOG0645 WD40 repeat protein [G 100.0 1E-30 2.2E-35 246.1 28.7 228 99-388 13-259 (312)
52 KOG0284 Polyadenylation factor 100.0 2.2E-32 4.8E-37 268.4 16.1 273 4-312 93-378 (464)
53 KOG0278 Serine/threonine kinas 100.0 4.7E-32 1E-36 253.0 17.2 279 38-388 9-295 (334)
54 PTZ00421 coronin; Provisional 100.0 5.9E-30 1.3E-34 266.3 34.3 261 33-325 11-301 (493)
55 KOG0306 WD40-repeat-containing 100.0 1.6E-30 3.4E-35 269.8 29.7 287 2-388 372-662 (888)
56 KOG0643 Translation initiation 100.0 4.3E-31 9.3E-36 248.3 22.6 292 39-387 6-314 (327)
57 KOG0288 WD40 repeat protein Ti 100.0 1.2E-31 2.5E-36 263.6 17.8 286 37-388 169-459 (459)
58 KOG0318 WD40 repeat stress pro 100.0 4.6E-29 1E-33 251.1 36.8 236 12-260 70-354 (603)
59 PTZ00420 coronin; Provisional 100.0 1.1E-29 2.3E-34 267.2 32.6 228 118-389 49-292 (568)
60 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.7E-28 5.8E-33 230.6 36.0 258 76-389 11-278 (300)
61 KOG0275 Conserved WD40 repeat- 100.0 5.9E-31 1.3E-35 252.7 16.2 237 99-387 212-464 (508)
62 KOG0316 Conserved WD40 repeat- 100.0 3.8E-29 8.3E-34 231.9 25.6 282 34-387 8-296 (307)
63 KOG0301 Phospholipase A2-activ 100.0 1.6E-29 3.4E-34 260.7 25.6 277 34-388 5-286 (745)
64 KOG0293 WD40 repeat-containing 100.0 3.4E-29 7.4E-34 246.3 22.8 274 4-314 225-513 (519)
65 KOG0641 WD40 repeat protein [G 100.0 9.6E-28 2.1E-32 221.7 31.0 297 34-388 24-347 (350)
66 KOG0283 WD40 repeat-containing 100.0 5.4E-29 1.2E-33 261.4 23.3 242 98-389 265-575 (712)
67 KOG0277 Peroxisomal targeting 100.0 7.5E-29 1.6E-33 231.9 20.7 281 48-388 12-307 (311)
68 PTZ00420 coronin; Provisional 100.0 2.6E-27 5.5E-32 249.3 34.6 265 9-292 34-325 (568)
69 KOG0305 Anaphase promoting com 100.0 5.2E-28 1.1E-32 247.7 26.8 255 76-389 197-460 (484)
70 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-27 4.8E-32 227.3 29.4 242 99-389 13-261 (311)
71 KOG0313 Microtubule binding pr 100.0 3.6E-28 7.8E-33 237.1 21.7 231 99-389 104-375 (423)
72 KOG0310 Conserved WD40 repeat- 100.0 8.8E-28 1.9E-32 240.2 24.5 287 25-385 11-304 (487)
73 KOG0282 mRNA splicing factor [ 100.0 5E-29 1.1E-33 248.9 15.5 239 98-388 212-460 (503)
74 KOG1407 WD40 repeat protein [F 100.0 5.7E-27 1.2E-31 220.0 26.9 282 37-387 14-308 (313)
75 KOG0308 Conserved WD40 repeat- 100.0 5.4E-28 1.2E-32 248.1 17.9 228 106-386 30-281 (735)
76 KOG0296 Angio-associated migra 100.0 1.9E-26 4.2E-31 224.2 27.0 274 4-314 107-398 (399)
77 KOG0301 Phospholipase A2-activ 100.0 7.7E-27 1.7E-31 241.0 25.0 265 5-314 16-288 (745)
78 KOG0640 mRNA cleavage stimulat 100.0 7E-27 1.5E-31 223.7 22.8 294 35-388 104-424 (430)
79 KOG0288 WD40 repeat protein Ti 100.0 8.7E-28 1.9E-32 236.4 16.4 273 3-311 175-458 (459)
80 KOG0973 Histone transcription 100.0 1.8E-26 3.9E-31 247.6 27.8 286 38-387 7-352 (942)
81 KOG0278 Serine/threonine kinas 100.0 2.9E-27 6.4E-32 220.9 17.4 275 5-319 16-302 (334)
82 KOG1446 Histone H3 (Lys4) meth 99.9 3.2E-25 6.9E-30 212.5 30.9 274 44-387 14-300 (311)
83 KOG1408 WD40 repeat protein [F 99.9 6.6E-26 1.4E-30 234.3 27.5 320 8-389 265-712 (1080)
84 KOG0310 Conserved WD40 repeat- 99.9 5.9E-27 1.3E-31 234.2 18.7 229 102-388 28-266 (487)
85 KOG0305 Anaphase promoting com 99.9 1.7E-25 3.7E-30 229.2 27.0 265 14-316 189-463 (484)
86 KOG0277 Peroxisomal targeting 99.9 3E-26 6.6E-31 214.5 19.4 232 104-389 12-264 (311)
87 KOG1539 WD repeat protein [Gen 99.9 1.8E-24 3.8E-29 227.1 34.5 306 13-389 173-647 (910)
88 KOG0268 Sof1-like rRNA process 99.9 5.7E-27 1.2E-31 227.8 14.7 280 35-388 58-343 (433)
89 KOG0643 Translation initiation 99.9 5.8E-25 1.3E-29 207.1 26.2 272 5-314 12-317 (327)
90 KOG0300 WD40 repeat-containing 99.9 2E-25 4.4E-30 214.2 20.2 288 16-389 127-427 (481)
91 KOG0299 U3 snoRNP-associated p 99.9 9.3E-25 2E-29 217.4 24.7 278 36-379 135-444 (479)
92 KOG0300 WD40 repeat-containing 99.9 5.5E-25 1.2E-29 211.2 22.0 302 3-388 148-474 (481)
93 KOG0267 Microtubule severing p 99.9 9.7E-27 2.1E-31 241.1 10.3 218 111-382 38-260 (825)
94 COG2319 FOG: WD40 repeat [Gene 99.9 7.4E-22 1.6E-26 186.6 41.3 318 3-388 65-398 (466)
95 KOG1407 WD40 repeat protein [F 99.9 7.2E-24 1.6E-28 199.2 26.4 283 3-314 20-311 (313)
96 KOG0772 Uncharacterized conser 99.9 2.8E-25 6E-30 223.5 17.9 227 103-380 170-429 (641)
97 KOG0308 Conserved WD40 repeat- 99.9 4.1E-25 9E-30 227.0 18.4 237 54-321 35-293 (735)
98 KOG1063 RNA polymerase II elon 99.9 4.4E-24 9.5E-29 220.7 24.6 315 5-388 193-646 (764)
99 KOG2096 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 202.2 25.2 297 25-389 63-401 (420)
100 KOG0299 U3 snoRNP-associated p 99.9 8.5E-24 1.8E-28 210.5 24.2 265 3-293 142-445 (479)
101 KOG1332 Vesicle coat complex C 99.9 1.9E-24 4.2E-29 201.5 18.4 224 112-388 22-284 (299)
102 KOG0641 WD40 repeat protein [G 99.9 7.8E-23 1.7E-27 189.2 28.1 240 99-388 31-301 (350)
103 COG2319 FOG: WD40 repeat [Gene 99.9 2.4E-21 5.1E-26 183.1 38.6 281 39-388 61-357 (466)
104 KOG0283 WD40 repeat-containing 99.9 2.1E-23 4.6E-28 219.5 25.5 244 39-314 262-576 (712)
105 KOG0973 Histone transcription 99.9 2.3E-23 5E-28 223.8 25.5 240 103-388 16-310 (942)
106 KOG0772 Uncharacterized conser 99.9 7.4E-23 1.6E-27 206.1 25.9 289 38-387 162-484 (641)
107 KOG0267 Microtubule severing p 99.9 3.3E-25 7.2E-30 229.7 8.5 219 113-389 4-225 (825)
108 KOG0289 mRNA splicing factor [ 99.9 5.3E-23 1.2E-27 203.8 22.9 231 104-387 221-459 (506)
109 KOG0268 Sof1-like rRNA process 99.9 5.5E-24 1.2E-28 207.1 15.6 265 14-321 80-352 (433)
110 KOG0289 mRNA splicing factor [ 99.9 2.1E-22 4.5E-27 199.6 26.3 276 45-388 220-504 (506)
111 KOG1063 RNA polymerase II elon 99.9 1.9E-22 4.1E-27 208.6 26.8 322 7-388 105-600 (764)
112 KOG0294 WD40 repeat-containing 99.9 1.8E-22 3.9E-27 193.7 23.5 234 94-389 36-280 (362)
113 KOG0264 Nucleosome remodeling 99.9 1.9E-22 4.1E-27 200.6 23.0 265 43-389 123-403 (422)
114 KOG4283 Transcription-coupled 99.9 2E-22 4.3E-27 192.2 21.5 269 99-388 42-363 (397)
115 KOG0647 mRNA export protein (c 99.9 9.5E-22 2.1E-26 187.9 25.7 276 38-378 21-311 (347)
116 KOG0639 Transducin-like enhanc 99.9 7.3E-23 1.6E-27 205.6 18.8 283 35-388 412-702 (705)
117 KOG2055 WD40 repeat protein [G 99.9 1.1E-21 2.3E-26 195.8 25.0 283 4-389 214-511 (514)
118 KOG2048 WD40 repeat protein [G 99.9 1.2E-20 2.6E-25 195.0 30.6 271 45-386 26-315 (691)
119 KOG0646 WD40 repeat protein [G 99.9 8.2E-22 1.8E-26 196.7 20.5 274 16-323 10-316 (476)
120 KOG1274 WD40 repeat protein [G 99.9 3.4E-21 7.4E-26 204.3 26.1 235 105-389 18-261 (933)
121 KOG2445 Nuclear pore complex c 99.9 3.6E-21 7.9E-26 184.4 23.8 251 103-388 16-316 (361)
122 KOG0650 WD40 repeat nucleolar 99.9 2.1E-21 4.6E-26 198.3 22.7 306 5-387 402-732 (733)
123 KOG0640 mRNA cleavage stimulat 99.9 1.4E-21 3.1E-26 187.4 19.6 275 4-312 113-424 (430)
124 KOG0647 mRNA export protein (c 99.9 1.6E-20 3.5E-25 179.5 24.2 261 5-291 29-311 (347)
125 KOG1036 Mitotic spindle checkp 99.9 4.5E-20 9.6E-25 176.8 26.3 272 39-380 8-294 (323)
126 KOG0269 WD40 repeat-containing 99.9 2.2E-21 4.9E-26 202.7 18.3 275 46-384 41-334 (839)
127 KOG2048 WD40 repeat protein [G 99.9 4.6E-19 9.9E-24 183.4 34.2 265 2-295 24-311 (691)
128 KOG2096 WD40 repeat protein [G 99.9 6.1E-20 1.3E-24 176.8 25.5 275 4-312 87-400 (420)
129 PRK11028 6-phosphogluconolacto 99.9 4.5E-19 9.8E-24 174.3 31.6 272 15-318 4-310 (330)
130 KOG1332 Vesicle coat complex C 99.9 6.3E-21 1.4E-25 178.1 17.1 246 37-312 4-284 (299)
131 KOG0646 WD40 repeat protein [G 99.9 2.7E-20 5.9E-25 185.9 22.7 254 76-389 18-306 (476)
132 KOG1408 WD40 repeat protein [F 99.9 7.5E-20 1.6E-24 189.8 25.7 274 9-315 330-714 (1080)
133 KOG2106 Uncharacterized conser 99.9 9E-19 1.9E-23 176.5 32.1 313 4-388 155-519 (626)
134 KOG1539 WD repeat protein [Gen 99.9 1.4E-18 3.1E-23 183.0 34.4 345 5-389 116-605 (910)
135 KOG2445 Nuclear pore complex c 99.9 1.4E-19 3E-24 173.5 23.9 258 37-326 6-333 (361)
136 PRK01742 tolB translocation pr 99.9 8E-20 1.7E-24 187.2 23.2 233 22-284 183-426 (429)
137 PRK01742 tolB translocation pr 99.8 2.4E-19 5.1E-24 183.7 25.9 220 76-326 184-415 (429)
138 KOG1274 WD40 repeat protein [G 99.8 6.4E-19 1.4E-23 187.1 28.8 263 43-377 12-287 (933)
139 PRK11028 6-phosphogluconolacto 99.8 3E-18 6.5E-23 168.5 31.3 262 76-388 12-302 (330)
140 KOG2919 Guanine nucleotide-bin 99.8 2.2E-19 4.7E-24 173.2 20.8 274 45-381 50-361 (406)
141 KOG0294 WD40 repeat-containing 99.8 5.7E-19 1.2E-23 169.8 23.0 231 4-257 44-281 (362)
142 KOG0269 WD40 repeat-containing 99.8 8.7E-21 1.9E-25 198.3 11.2 195 143-389 89-295 (839)
143 KOG1036 Mitotic spindle checkp 99.8 1.2E-18 2.5E-23 167.1 24.1 239 102-389 15-261 (323)
144 KOG2106 Uncharacterized conser 99.8 1.6E-17 3.5E-22 167.5 32.6 321 3-389 246-625 (626)
145 KOG0264 Nucleosome remodeling 99.8 6.1E-19 1.3E-23 175.7 19.8 232 13-260 137-407 (422)
146 KOG0303 Actin-binding protein 99.8 1.7E-18 3.6E-23 170.5 22.4 221 84-388 66-292 (472)
147 KOG0270 WD40 repeat-containing 99.8 5.9E-19 1.3E-23 175.5 18.5 228 112-389 191-448 (463)
148 KOG4283 Transcription-coupled 99.8 1.7E-18 3.7E-23 165.4 20.5 212 137-388 39-274 (397)
149 KOG0302 Ribosome Assembly prot 99.8 8.3E-19 1.8E-23 171.8 17.6 195 142-389 152-377 (440)
150 PRK03629 tolB translocation pr 99.8 2.7E-17 5.8E-22 168.8 28.7 236 24-283 180-427 (429)
151 KOG2055 WD40 repeat protein [G 99.8 3.9E-18 8.4E-23 170.4 21.5 232 99-386 212-463 (514)
152 KOG0321 WD40 repeat-containing 99.8 1.7E-18 3.8E-23 178.2 19.3 296 13-389 64-390 (720)
153 KOG4378 Nuclear protein COP1 [ 99.8 5.2E-18 1.1E-22 170.7 22.2 278 16-326 5-293 (673)
154 KOG0639 Transducin-like enhanc 99.8 2.8E-18 6.1E-23 172.8 19.1 260 6-294 422-695 (705)
155 KOG4328 WD40 protein [Function 99.8 1.1E-17 2.3E-22 167.2 23.0 295 37-389 179-494 (498)
156 KOG2919 Guanine nucleotide-bin 99.8 7.6E-18 1.6E-22 162.6 19.8 234 104-389 53-326 (406)
157 KOG1273 WD40 repeat protein [G 99.8 1.9E-17 4.1E-22 159.4 22.4 282 35-388 17-320 (405)
158 KOG1034 Transcriptional repres 99.8 2.2E-18 4.7E-23 166.5 15.8 226 113-388 105-381 (385)
159 KOG4378 Nuclear protein COP1 [ 99.8 9.7E-18 2.1E-22 168.8 18.0 252 77-389 13-279 (673)
160 KOG1538 Uncharacterized conser 99.8 3.7E-17 8.1E-22 168.9 21.2 266 45-388 13-291 (1081)
161 PRK04922 tolB translocation pr 99.8 8.9E-16 1.9E-20 157.5 31.3 206 122-381 183-399 (433)
162 KOG0270 WD40 repeat-containing 99.8 4.3E-17 9.4E-22 162.3 20.3 200 104-319 247-454 (463)
163 KOG4328 WD40 protein [Function 99.8 3.7E-17 8E-22 163.3 18.5 239 100-388 186-448 (498)
164 PRK04922 tolB translocation pr 99.8 3.8E-16 8.3E-21 160.2 26.2 237 23-283 184-432 (433)
165 PRK05137 tolB translocation pr 99.7 2.1E-15 4.6E-20 154.7 31.0 207 122-381 181-397 (435)
166 KOG0321 WD40 repeat-containing 99.7 7.9E-17 1.7E-21 166.1 20.2 242 102-388 51-345 (720)
167 PRK03629 tolB translocation pr 99.7 7.1E-16 1.5E-20 158.3 27.1 226 76-326 179-417 (429)
168 KOG0303 Actin-binding protein 99.7 1.4E-17 3E-22 164.0 13.4 158 180-388 76-247 (472)
169 KOG1517 Guanine nucleotide bin 99.7 2.1E-16 4.5E-21 169.9 23.3 303 23-388 1050-1379(1387)
170 KOG0322 G-protein beta subunit 99.7 3.3E-17 7.1E-22 154.7 14.7 286 4-389 15-322 (323)
171 KOG0650 WD40 repeat nucleolar 99.7 7.7E-17 1.7E-21 165.2 18.5 238 98-387 398-677 (733)
172 KOG0302 Ribosome Assembly prot 99.7 7.2E-17 1.6E-21 158.3 17.5 185 111-315 163-379 (440)
173 KOG1273 WD40 repeat protein [G 99.7 6.7E-16 1.5E-20 148.8 22.8 272 7-315 27-323 (405)
174 KOG1007 WD repeat protein TSSC 99.7 3.1E-16 6.7E-21 149.7 20.2 269 19-313 36-360 (370)
175 KOG1445 Tumor-specific antigen 99.7 2.7E-16 5.8E-21 162.0 21.0 109 230-388 629-748 (1012)
176 PRK05137 tolB translocation pr 99.7 3.7E-15 8.1E-20 152.9 27.9 234 24-283 183-432 (435)
177 KOG0642 Cell-cycle nuclear pro 99.7 1E-16 2.2E-21 163.5 15.5 238 101-389 295-560 (577)
178 KOG1007 WD repeat protein TSSC 99.7 4E-16 8.7E-21 148.9 16.9 237 4-256 64-360 (370)
179 KOG0307 Vesicle coat complex C 99.7 5.2E-17 1.1E-21 176.0 12.3 230 105-388 69-325 (1049)
180 KOG1034 Transcriptional repres 99.7 1.4E-15 3E-20 147.2 20.3 265 14-313 56-382 (385)
181 KOG0644 Uncharacterized conser 99.7 2.7E-17 5.9E-22 173.3 8.3 228 99-386 189-464 (1113)
182 KOG1538 Uncharacterized conser 99.7 2.4E-15 5.2E-20 155.7 21.7 269 5-314 14-293 (1081)
183 KOG0307 Vesicle coat complex C 99.7 1.1E-16 2.4E-21 173.6 12.4 231 15-258 82-328 (1049)
184 PRK02889 tolB translocation pr 99.7 5.8E-15 1.3E-19 151.4 24.2 207 123-382 176-392 (427)
185 PRK02889 tolB translocation pr 99.7 1.5E-14 3.4E-19 148.2 26.3 247 10-283 161-424 (427)
186 KOG0644 Uncharacterized conser 99.7 1.1E-16 2.3E-21 168.9 9.2 231 3-256 190-467 (1113)
187 KOG1009 Chromatin assembly com 99.7 7.5E-16 1.6E-20 152.3 14.5 152 103-294 16-186 (434)
188 KOG4227 WD40 repeat protein [G 99.7 8.2E-15 1.8E-19 144.6 21.5 287 38-388 51-385 (609)
189 KOG2110 Uncharacterized conser 99.7 5.4E-14 1.2E-18 137.9 26.7 226 106-388 11-246 (391)
190 PF02239 Cytochrom_D1: Cytochr 99.7 3.3E-13 7.2E-18 136.4 32.0 306 16-388 9-345 (369)
191 TIGR02800 propeller_TolB tol-p 99.7 1E-13 2.2E-18 139.9 28.4 242 55-325 154-407 (417)
192 PF08662 eIF2A: Eukaryotic tra 99.6 1.3E-14 2.9E-19 133.9 19.5 130 208-388 37-177 (194)
193 KOG1188 WD40 repeat protein [G 99.6 8.7E-15 1.9E-19 142.3 18.8 281 14-389 41-345 (376)
194 PRK00178 tolB translocation pr 99.6 1.2E-13 2.5E-18 141.1 27.9 235 24-283 180-427 (430)
195 KOG0771 Prolactin regulatory e 99.6 3.5E-15 7.5E-20 148.0 15.3 186 145-386 148-350 (398)
196 KOG0642 Cell-cycle nuclear pro 99.6 4.8E-15 1E-19 151.3 14.8 257 38-326 289-573 (577)
197 KOG1009 Chromatin assembly com 99.6 2.3E-15 5.1E-20 148.8 12.1 150 186-385 14-190 (434)
198 PRK04792 tolB translocation pr 99.6 2.6E-13 5.6E-18 140.2 27.4 236 24-283 199-446 (448)
199 TIGR02800 propeller_TolB tol-p 99.6 3.6E-13 7.8E-18 136.0 27.1 225 24-267 171-407 (417)
200 PRK00178 tolB translocation pr 99.6 1.2E-12 2.7E-17 133.6 31.2 204 103-326 201-417 (430)
201 PF08662 eIF2A: Eukaryotic tra 99.6 2.4E-13 5.2E-18 125.6 22.5 169 48-265 9-187 (194)
202 KOG1272 WD40-repeat-containing 99.6 3.8E-15 8.3E-20 149.4 10.4 198 103-324 132-333 (545)
203 KOG1445 Tumor-specific antigen 99.6 2.5E-14 5.4E-19 147.6 15.4 183 119-315 599-799 (1012)
204 KOG1963 WD40 repeat protein [G 99.6 2.9E-12 6.2E-17 136.5 30.4 325 9-389 166-537 (792)
205 KOG0974 WD-repeat protein WDR6 99.6 7.5E-14 1.6E-18 150.6 18.2 264 13-315 17-289 (967)
206 KOG0649 WD40 repeat protein [G 99.6 6.8E-13 1.5E-17 124.6 22.2 199 105-323 15-244 (325)
207 KOG0771 Prolactin regulatory e 99.5 1.5E-13 3.2E-18 136.5 16.0 192 100-314 144-354 (398)
208 PRK04792 tolB translocation pr 99.5 1.4E-12 3E-17 134.9 24.0 203 103-326 220-436 (448)
209 KOG2315 Predicted translation 99.5 6.9E-12 1.5E-16 128.5 28.3 292 21-388 9-388 (566)
210 PRK01029 tolB translocation pr 99.5 1.3E-11 2.9E-16 127.0 30.0 203 104-322 188-411 (428)
211 KOG1587 Cytoplasmic dynein int 99.5 6.1E-12 1.3E-16 132.4 27.1 256 77-389 223-515 (555)
212 PRK01029 tolB translocation pr 99.5 1E-11 2.2E-16 127.9 28.1 239 24-285 166-426 (428)
213 KOG1963 WD40 repeat protein [G 99.5 6.8E-12 1.5E-16 133.7 26.3 268 49-386 21-318 (792)
214 KOG2110 Uncharacterized conser 99.5 4.1E-12 9E-17 124.8 22.8 184 114-316 57-250 (391)
215 KOG1240 Protein kinase contain 99.5 7.2E-12 1.6E-16 137.2 26.0 262 97-389 1045-1333(1431)
216 PLN02919 haloacid dehalogenase 99.5 3.7E-11 8E-16 135.8 32.6 253 99-389 566-887 (1057)
217 TIGR03300 assembly_YfgL outer 99.5 2.5E-10 5.5E-15 114.4 34.5 273 9-326 61-350 (377)
218 KOG1517 Guanine nucleotide bin 99.5 6.7E-12 1.5E-16 135.8 23.2 236 103-389 1067-1332(1387)
219 PF02239 Cytochrom_D1: Cytochr 99.5 9.9E-11 2.1E-15 118.4 30.6 288 9-324 42-357 (369)
220 KOG0649 WD40 repeat protein [G 99.5 6.2E-11 1.3E-15 111.6 25.9 240 45-324 11-283 (325)
221 KOG0974 WD-repeat protein WDR6 99.5 1.5E-12 3.2E-17 140.7 17.3 192 142-389 88-287 (967)
222 PF10282 Lactonase: Lactonase, 99.5 1.7E-09 3.7E-14 108.0 38.0 278 15-322 1-332 (345)
223 KOG1272 WD40-repeat-containing 99.5 2.4E-13 5.1E-18 136.6 9.9 225 48-312 133-360 (545)
224 KOG1334 WD40 repeat protein [G 99.4 1.2E-12 2.6E-17 132.2 14.4 285 37-388 136-464 (559)
225 KOG1524 WD40 repeat-containing 99.4 5E-12 1.1E-16 129.0 18.1 199 115-384 77-280 (737)
226 KOG1587 Cytoplasmic dynein int 99.4 1.8E-11 3.9E-16 128.9 22.4 261 23-314 222-516 (555)
227 KOG1188 WD40 repeat protein [G 99.4 7E-12 1.5E-16 122.2 16.0 181 154-388 42-240 (376)
228 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.8E-09 8.1E-14 106.1 35.6 275 23-323 27-339 (352)
229 KOG2394 WD40 protein DMR-N9 [G 99.4 3.4E-12 7.4E-17 130.2 13.9 125 186-326 220-374 (636)
230 KOG1524 WD40 repeat-containing 99.4 4.8E-12 1E-16 129.1 14.5 220 105-385 19-250 (737)
231 PF10282 Lactonase: Lactonase, 99.4 9.9E-09 2.1E-13 102.5 38.2 244 99-388 35-320 (345)
232 KOG1240 Protein kinase contain 99.4 6E-11 1.3E-15 130.1 23.6 242 3-258 1048-1335(1431)
233 PLN02919 haloacid dehalogenase 99.4 5.6E-10 1.2E-14 126.4 32.2 239 13-265 580-899 (1057)
234 COG5354 Uncharacterized protei 99.4 3E-10 6.6E-15 115.6 26.8 322 6-389 35-394 (561)
235 KOG2111 Uncharacterized conser 99.4 4.2E-10 9.2E-15 109.1 26.0 174 123-315 75-257 (346)
236 KOG2111 Uncharacterized conser 99.4 8.3E-11 1.8E-15 113.9 20.8 171 165-388 75-254 (346)
237 KOG4547 WD40 repeat-containing 99.4 3.2E-11 7E-16 124.2 18.5 205 110-387 2-217 (541)
238 KOG0290 Conserved WD40 repeat- 99.3 6.9E-11 1.5E-15 113.5 18.7 257 13-292 59-355 (364)
239 KOG2321 WD40 repeat protein [G 99.3 1.6E-10 3.6E-15 118.9 22.0 271 44-386 51-339 (703)
240 KOG0290 Conserved WD40 repeat- 99.3 4.7E-11 1E-15 114.6 15.5 225 113-389 59-317 (364)
241 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.4E-08 3E-13 102.1 33.1 263 76-388 27-328 (352)
242 KOG4227 WD40 repeat protein [G 99.3 4.7E-10 1E-14 111.3 21.3 273 6-313 59-386 (609)
243 KOG2139 WD40 repeat protein [G 99.3 3E-10 6.5E-15 111.8 19.0 176 104-293 102-300 (445)
244 KOG1354 Serine/threonine prote 99.2 3.2E-10 6.9E-15 111.0 15.3 247 103-388 28-357 (433)
245 KOG3881 Uncharacterized conser 99.2 1.8E-09 3.9E-14 107.1 20.7 258 2-322 54-328 (412)
246 KOG3881 Uncharacterized conser 99.2 1.7E-09 3.7E-14 107.2 19.6 228 105-389 60-319 (412)
247 PRK04043 tolB translocation pr 99.2 1.3E-08 2.9E-13 104.6 27.2 236 8-265 150-408 (419)
248 KOG1310 WD40 repeat protein [G 99.2 5.4E-10 1.2E-14 114.6 15.4 162 138-313 47-230 (758)
249 KOG0322 G-protein beta subunit 99.2 1.1E-10 2.4E-15 110.9 9.7 135 162-313 172-322 (323)
250 KOG4497 Uncharacterized conser 99.1 1.2E-09 2.7E-14 106.5 15.6 302 13-387 20-388 (447)
251 PRK04043 tolB translocation pr 99.1 2.9E-08 6.3E-13 102.1 26.0 201 103-324 190-409 (419)
252 KOG4497 Uncharacterized conser 99.1 2.2E-08 4.8E-13 97.9 22.3 286 14-382 62-424 (447)
253 TIGR03300 assembly_YfgL outer 99.1 7.3E-08 1.6E-12 96.7 26.9 215 76-322 75-305 (377)
254 KOG2394 WD40 protein DMR-N9 [G 99.1 2.1E-09 4.5E-14 110.1 14.9 92 186-283 291-384 (636)
255 PF13360 PQQ_2: PQQ-like domai 99.1 1.9E-07 4.2E-12 86.6 26.1 213 77-321 4-237 (238)
256 KOG1523 Actin-related protein 99.0 1.5E-08 3.3E-13 98.5 18.7 213 141-386 10-232 (361)
257 KOG4547 WD40 repeat-containing 99.0 7E-09 1.5E-13 107.2 17.3 196 54-292 3-208 (541)
258 KOG1334 WD40 repeat protein [G 99.0 1.6E-09 3.5E-14 109.9 12.0 281 5-317 144-469 (559)
259 PF08450 SGL: SMP-30/Gluconola 99.0 3.4E-06 7.3E-11 79.7 34.1 217 104-379 3-244 (246)
260 KOG1310 WD40 repeat protein [G 99.0 9.6E-10 2.1E-14 112.8 10.1 170 177-388 42-229 (758)
261 KOG2314 Translation initiation 99.0 2.5E-07 5.4E-12 95.5 25.4 309 9-380 216-557 (698)
262 KOG1354 Serine/threonine prote 99.0 3.1E-08 6.7E-13 97.3 17.4 283 7-324 29-370 (433)
263 KOG2139 WD40 repeat protein [G 99.0 9.2E-09 2E-13 101.4 13.7 158 166-388 92-266 (445)
264 KOG2315 Predicted translation 99.0 4.5E-07 9.7E-12 93.7 26.1 286 8-321 39-396 (566)
265 COG4946 Uncharacterized protei 98.9 4.7E-06 1E-10 85.0 32.2 189 111-320 276-483 (668)
266 PF00400 WD40: WD domain, G-be 98.9 1.9E-09 4.1E-14 73.0 5.6 39 316-388 1-39 (39)
267 PF13360 PQQ_2: PQQ-like domai 98.9 2.5E-06 5.4E-11 79.1 27.4 212 121-388 1-228 (238)
268 KOG1523 Actin-related protein 98.9 2.1E-07 4.6E-12 90.7 19.6 195 101-316 11-238 (361)
269 KOG2321 WD40 repeat protein [G 98.9 2.5E-07 5.5E-12 95.8 21.1 256 9-293 57-333 (703)
270 PRK11138 outer membrane biogen 98.9 1.4E-05 3E-10 81.1 32.9 272 9-324 65-363 (394)
271 KOG3914 WD repeat protein WDR4 98.9 3.8E-08 8.2E-13 98.0 13.5 179 112-324 50-233 (390)
272 COG5354 Uncharacterized protei 98.8 1.1E-06 2.3E-11 90.2 24.1 291 21-388 9-346 (561)
273 PF15492 Nbas_N: Neuroblastoma 98.8 2.3E-06 4.9E-11 82.5 25.1 34 105-140 48-81 (282)
274 KOG1064 RAVE (regulator of V-A 98.8 1.1E-08 2.3E-13 116.1 10.0 179 111-324 2218-2408(2439)
275 PF07433 DUF1513: Protein of u 98.8 2.9E-06 6.2E-11 83.5 25.4 207 105-323 9-256 (305)
276 PF00400 WD40: WD domain, G-be 98.8 1.3E-08 2.8E-13 68.8 6.0 38 218-255 1-39 (39)
277 COG2706 3-carboxymuconate cycl 98.8 2.7E-05 5.8E-10 77.2 31.3 264 76-387 16-318 (346)
278 KOG3914 WD repeat protein WDR4 98.8 9.8E-08 2.1E-12 95.1 13.6 158 104-265 66-232 (390)
279 COG4946 Uncharacterized protei 98.8 6.4E-06 1.4E-10 84.1 26.2 171 108-291 327-506 (668)
280 KOG2695 WD40 repeat protein [G 98.7 7.8E-08 1.7E-12 94.5 10.2 168 137-326 207-388 (425)
281 KOG1409 Uncharacterized conser 98.7 1.3E-06 2.8E-11 86.0 18.5 219 13-259 36-272 (404)
282 COG5170 CDC55 Serine/threonine 98.7 5.5E-08 1.2E-12 94.6 8.7 241 103-389 29-308 (460)
283 COG2706 3-carboxymuconate cycl 98.7 0.00015 3.2E-09 72.0 32.5 268 22-319 15-328 (346)
284 PF07433 DUF1513: Protein of u 98.6 1.6E-05 3.5E-10 78.3 24.2 223 48-292 8-275 (305)
285 KOG1064 RAVE (regulator of V-A 98.6 2.1E-07 4.6E-12 105.9 12.3 210 111-389 2178-2397(2439)
286 KOG0309 Conserved WD40 repeat- 98.6 8.3E-08 1.8E-12 101.6 8.1 197 97-314 111-339 (1081)
287 KOG4190 Uncharacterized conser 98.6 1E-07 2.2E-12 98.3 8.2 170 177-388 727-904 (1034)
288 PF08450 SGL: SMP-30/Gluconola 98.6 0.00051 1.1E-08 64.8 32.6 178 103-291 42-243 (246)
289 COG5170 CDC55 Serine/threonine 98.6 8.3E-07 1.8E-11 86.5 12.9 263 4-294 27-358 (460)
290 KOG4190 Uncharacterized conser 98.6 1E-07 2.2E-12 98.2 6.9 173 137-326 731-918 (1034)
291 PF04762 IKI3: IKI3 family; I 98.5 0.00011 2.4E-09 82.7 31.0 340 4-388 76-454 (928)
292 KOG0309 Conserved WD40 repeat- 98.5 3.7E-07 8E-12 96.8 10.2 264 102-388 26-337 (1081)
293 PRK11138 outer membrane biogen 98.5 0.00012 2.6E-09 74.3 27.8 226 9-265 116-362 (394)
294 PF04762 IKI3: IKI3 family; I 98.5 0.00034 7.4E-09 78.8 33.5 263 13-314 221-519 (928)
295 KOG0280 Uncharacterized conser 98.4 1.7E-05 3.6E-10 77.0 18.1 164 112-284 83-264 (339)
296 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00018 3.8E-09 72.2 26.5 253 21-293 21-347 (353)
297 KOG2314 Translation initiation 98.4 8.2E-05 1.8E-09 77.3 23.3 262 5-293 251-557 (698)
298 KOG2695 WD40 repeat protein [G 98.4 1.5E-06 3.2E-11 85.8 9.0 160 117-281 228-400 (425)
299 PF02897 Peptidase_S9_N: Proly 98.3 0.0022 4.8E-08 65.2 32.1 249 46-319 125-409 (414)
300 PRK02888 nitrous-oxide reducta 98.3 0.00014 3.1E-09 77.6 23.5 178 106-315 198-405 (635)
301 KOG1832 HIV-1 Vpr-binding prot 98.3 3.9E-07 8.3E-12 98.2 3.7 187 105-324 1106-1301(1516)
302 KOG0882 Cyclophilin-related pe 98.3 1.3E-05 2.9E-10 81.4 14.1 261 1-324 7-315 (558)
303 KOG0280 Uncharacterized conser 98.3 2.6E-05 5.7E-10 75.6 15.5 193 105-317 126-336 (339)
304 KOG1409 Uncharacterized conser 98.3 2.5E-05 5.4E-10 77.2 14.6 220 111-389 34-269 (404)
305 KOG4532 WD40-like repeat conta 98.2 8.6E-05 1.9E-09 71.5 17.2 171 121-315 50-234 (344)
306 PF14583 Pectate_lyase22: Olig 98.2 0.0016 3.6E-08 66.1 26.8 313 29-386 16-377 (386)
307 PRK10115 protease 2; Provision 98.2 0.014 2.9E-07 64.1 35.6 243 46-317 128-397 (686)
308 cd00216 PQQ_DH Dehydrogenases 98.2 0.0039 8.4E-08 65.5 30.3 277 10-324 58-434 (488)
309 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0023 4.9E-08 64.2 27.1 271 53-378 1-345 (353)
310 KOG4532 WD40-like repeat conta 98.1 0.00045 9.7E-09 66.6 19.5 225 113-383 84-325 (344)
311 COG0823 TolB Periplasmic compo 98.0 0.00024 5.2E-09 73.5 17.5 175 133-323 182-367 (425)
312 PF06433 Me-amine-dh_H: Methyl 98.0 0.003 6.6E-08 63.2 24.5 275 24-324 18-330 (342)
313 smart00320 WD40 WD40 repeats. 98.0 1.9E-05 4.2E-10 49.5 5.9 28 361-388 13-40 (40)
314 PRK02888 nitrous-oxide reducta 98.0 0.0015 3.2E-08 70.0 22.3 216 94-326 228-485 (635)
315 COG3391 Uncharacterized conser 97.9 0.038 8.2E-07 56.3 32.7 269 25-326 13-295 (381)
316 KOG4714 Nucleoporin [Nuclear s 97.9 0.00065 1.4E-08 65.3 15.9 153 208-389 159-317 (319)
317 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.016 3.4E-07 56.1 24.5 109 13-140 23-132 (354)
318 KOG2041 WD40 repeat protein [G 97.8 5.9E-05 1.3E-09 80.3 8.6 151 189-389 18-185 (1189)
319 COG3391 Uncharacterized conser 97.8 0.041 8.8E-07 56.0 28.7 226 102-381 32-273 (381)
320 COG0823 TolB Periplasmic compo 97.8 0.0025 5.3E-08 66.1 19.9 209 21-247 171-388 (425)
321 PF04053 Coatomer_WDAD: Coatom 97.7 0.006 1.3E-07 63.6 22.0 214 102-387 34-259 (443)
322 smart00320 WD40 WD40 repeats. 97.7 9.7E-05 2.1E-09 46.1 5.4 38 218-255 2-40 (40)
323 PF15492 Nbas_N: Neuroblastoma 97.7 0.027 5.7E-07 54.8 24.2 222 13-268 9-271 (282)
324 PF06433 Me-amine-dh_H: Methyl 97.6 0.11 2.4E-06 52.2 29.8 262 76-388 17-318 (342)
325 COG3386 Gluconolactonase [Carb 97.5 0.065 1.4E-06 53.3 25.1 195 111-326 34-254 (307)
326 KOG0882 Cyclophilin-related pe 97.5 0.00044 9.6E-09 70.6 9.8 198 112-324 19-241 (558)
327 PF14583 Pectate_lyase22: Olig 97.5 0.088 1.9E-06 53.7 25.9 265 13-294 48-371 (386)
328 PF11768 DUF3312: Protein of u 97.5 0.0045 9.8E-08 65.1 16.3 113 142-257 206-329 (545)
329 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.28 6.1E-06 52.3 32.1 193 12-221 68-338 (527)
330 KOG1832 HIV-1 Vpr-binding prot 97.3 0.00018 3.9E-09 78.3 4.3 123 179-322 1095-1222(1516)
331 cd00216 PQQ_DH Dehydrogenases 97.3 0.26 5.7E-06 51.8 27.5 231 14-265 111-433 (488)
332 KOG4714 Nucleoporin [Nuclear s 97.3 0.0015 3.3E-08 62.8 9.3 159 179-388 83-252 (319)
333 PF02897 Peptidase_S9_N: Proly 97.3 0.16 3.6E-06 51.5 24.9 206 104-324 127-367 (414)
334 KOG2041 WD40 repeat protein [G 97.3 0.049 1.1E-06 58.9 21.0 250 13-292 26-327 (1189)
335 KOG1912 WD40 repeat protein [G 97.2 0.039 8.4E-07 60.0 20.2 235 105-388 20-302 (1062)
336 PF11768 DUF3312: Protein of u 97.2 0.0014 3E-08 68.9 8.7 67 276-389 262-328 (545)
337 KOG1920 IkappaB kinase complex 97.1 0.029 6.3E-07 63.4 18.9 227 103-388 71-320 (1265)
338 PF06977 SdiA-regulated: SdiA- 97.1 0.29 6.2E-06 47.3 23.1 182 103-291 24-239 (248)
339 PF06977 SdiA-regulated: SdiA- 97.0 0.15 3.3E-06 49.2 20.6 191 38-247 16-240 (248)
340 PF04841 Vps16_N: Vps16, N-ter 96.9 0.55 1.2E-05 48.4 24.8 49 124-177 62-112 (410)
341 KOG1275 PAB-dependent poly(A) 96.9 0.015 3.2E-07 64.0 13.4 178 197-388 146-340 (1118)
342 PF04841 Vps16_N: Vps16, N-ter 96.8 0.18 3.9E-06 52.0 20.6 51 166-220 62-112 (410)
343 KOG1920 IkappaB kinase complex 96.8 0.59 1.3E-05 53.4 25.3 207 5-217 70-323 (1265)
344 PF05096 Glu_cyclase_2: Glutam 96.8 0.57 1.2E-05 45.6 24.6 194 34-247 34-250 (264)
345 PF07995 GSDH: Glucose / Sorbo 96.8 0.69 1.5E-05 46.2 25.5 99 101-203 2-130 (331)
346 PRK13616 lipoprotein LpqB; Pro 96.7 0.23 5.1E-06 53.6 20.8 189 45-253 350-564 (591)
347 KOG1275 PAB-dependent poly(A) 96.6 0.013 2.9E-07 64.4 10.9 144 111-256 185-341 (1118)
348 KOG1008 Uncharacterized conser 96.6 0.00049 1.1E-08 72.9 -0.4 160 182-388 99-273 (783)
349 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.22 4.7E-06 42.3 14.9 43 114-158 16-59 (111)
350 PF00780 CNH: CNH domain; Int 96.4 0.88 1.9E-05 43.3 27.6 194 103-326 38-267 (275)
351 KOG1645 RING-finger-containing 96.4 0.0083 1.8E-07 60.7 7.0 127 167-294 175-308 (463)
352 PF03178 CPSF_A: CPSF A subuni 96.4 1.1 2.4E-05 44.0 23.9 171 124-314 3-202 (321)
353 PRK10115 protease 2; Provision 96.4 2.1 4.6E-05 47.1 27.7 181 104-292 130-333 (686)
354 PF05096 Glu_cyclase_2: Glutam 96.4 1.1 2.4E-05 43.7 23.8 173 133-324 33-213 (264)
355 PF03178 CPSF_A: CPSF A subuni 96.3 0.6 1.3E-05 46.0 19.9 172 166-388 3-200 (321)
356 PRK13616 lipoprotein LpqB; Pro 96.3 0.3 6.6E-06 52.8 19.1 139 142-290 350-513 (591)
357 KOG1645 RING-finger-containing 96.2 0.0095 2.1E-07 60.3 6.4 75 264-389 189-265 (463)
358 PF04053 Coatomer_WDAD: Coatom 96.2 0.29 6.2E-06 51.2 17.5 132 188-383 35-167 (443)
359 PF00780 CNH: CNH domain; Int 96.2 1.2 2.6E-05 42.3 26.5 230 11-268 5-267 (275)
360 KOG2444 WD40 repeat protein [G 96.2 0.0094 2E-07 56.4 5.8 133 200-389 32-176 (238)
361 KOG4640 Anaphase-promoting com 96.1 0.028 6E-07 59.8 9.6 77 230-321 22-99 (665)
362 KOG2114 Vacuolar assembly/sort 96.1 1 2.3E-05 49.8 21.3 199 106-326 29-256 (933)
363 KOG1912 WD40 repeat protein [G 96.1 0.047 1E-06 59.4 11.0 118 142-263 16-150 (1062)
364 KOG1916 Nuclear protein, conta 96.1 0.0025 5.5E-08 69.8 1.5 104 201-319 198-328 (1283)
365 KOG1008 Uncharacterized conser 96.0 0.0013 2.9E-08 69.6 -0.9 193 13-217 70-276 (783)
366 KOG2066 Vacuolar assembly/sort 95.9 0.085 1.8E-06 57.6 12.1 138 111-257 81-233 (846)
367 TIGR03606 non_repeat_PQQ dehyd 95.9 0.8 1.7E-05 48.0 18.9 53 99-152 28-89 (454)
368 TIGR02604 Piru_Ver_Nterm putat 95.6 0.86 1.9E-05 46.0 17.5 59 228-292 123-202 (367)
369 TIGR03118 PEPCTERM_chp_1 conse 95.6 2.8 6.1E-05 41.7 24.1 212 99-327 21-292 (336)
370 KOG2066 Vacuolar assembly/sort 95.3 0.73 1.6E-05 50.6 16.4 181 105-314 44-233 (846)
371 TIGR02604 Piru_Ver_Nterm putat 95.3 0.9 1.9E-05 45.9 16.4 80 209-292 48-142 (367)
372 PF08553 VID27: VID27 cytoplas 95.2 0.41 8.9E-06 53.3 14.7 126 205-380 501-638 (794)
373 KOG2114 Vacuolar assembly/sort 95.2 2.1 4.5E-05 47.6 19.5 210 5-230 27-258 (933)
374 COG3490 Uncharacterized protei 95.2 1.3 2.8E-05 43.8 16.2 159 106-290 40-242 (366)
375 PF07995 GSDH: Glucose / Sorbo 95.2 0.57 1.2E-05 46.8 14.5 63 230-293 3-72 (331)
376 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.1 5.8 0.00013 42.4 29.3 151 106-261 116-338 (527)
377 KOG2079 Vacuolar assembly/sort 95.1 0.11 2.4E-06 58.4 9.6 90 199-291 100-193 (1206)
378 PF14783 BBS2_Mid: Ciliary BBS 95.0 1.8 3.9E-05 36.8 14.8 77 188-268 2-82 (111)
379 KOG3617 WD40 and TPR repeat-co 95.0 0.71 1.5E-05 51.2 15.1 89 167-259 43-135 (1416)
380 PLN00033 photosystem II stabil 95.0 2.3 5E-05 43.9 18.5 111 227-386 279-395 (398)
381 PF08553 VID27: VID27 cytoplas 94.9 0.98 2.1E-05 50.4 16.4 135 163-314 502-647 (794)
382 KOG4640 Anaphase-promoting com 94.6 0.16 3.6E-06 54.2 9.2 75 187-263 22-99 (665)
383 KOG3621 WD40 repeat-containing 94.6 0.21 4.5E-06 54.0 10.0 114 228-386 33-150 (726)
384 KOG2079 Vacuolar assembly/sort 94.5 0.17 3.8E-06 56.9 9.4 79 113-195 99-182 (1206)
385 COG3386 Gluconolactonase [Carb 94.2 6.7 0.00015 39.0 22.9 178 106-293 72-275 (307)
386 PRK13684 Ycf48-like protein; P 94.1 4.2 9E-05 40.7 17.7 153 186-387 173-328 (334)
387 TIGR03606 non_repeat_PQQ dehyd 94.0 1.9 4.2E-05 45.2 15.6 64 222-285 23-90 (454)
388 PF10647 Gmad1: Lipoprotein Lp 94.0 6 0.00013 37.9 22.4 153 46-215 25-196 (253)
389 PLN00033 photosystem II stabil 93.8 5.8 0.00013 41.0 18.4 137 106-253 244-395 (398)
390 KOG2395 Protein involved in va 93.7 0.78 1.7E-05 48.5 11.8 131 200-379 347-490 (644)
391 PF13449 Phytase-like: Esteras 93.5 6.2 0.00014 39.2 17.8 64 230-293 86-166 (326)
392 KOG4649 PQQ (pyrrolo-quinoline 93.5 7.4 0.00016 38.2 17.2 108 113-224 23-131 (354)
393 COG3490 Uncharacterized protei 93.3 3.9 8.4E-05 40.5 15.0 181 22-213 139-345 (366)
394 KOG2444 WD40 repeat protein [G 93.2 0.26 5.7E-06 46.8 6.7 104 198-314 70-177 (238)
395 KOG3621 WD40 repeat-containing 93.1 0.49 1.1E-05 51.2 9.4 119 2-132 34-155 (726)
396 KOG3617 WD40 and TPR repeat-co 92.9 0.2 4.4E-06 55.2 6.3 103 235-388 22-129 (1416)
397 PF10647 Gmad1: Lipoprotein Lp 92.9 9.2 0.0002 36.7 21.3 141 143-293 25-185 (253)
398 PF12894 Apc4_WD40: Anaphase-p 92.3 0.39 8.4E-06 34.4 5.2 33 229-261 12-45 (47)
399 COG3204 Uncharacterized protei 91.8 15 0.00032 36.6 17.6 164 40-222 82-268 (316)
400 PF15390 DUF4613: Domain of un 91.5 2.6 5.6E-05 45.3 12.2 146 130-292 2-174 (671)
401 PF12894 Apc4_WD40: Anaphase-p 91.0 0.47 1E-05 34.0 4.5 28 361-388 12-39 (47)
402 KOG2395 Protein involved in va 90.5 3.3 7.1E-05 44.0 11.7 137 118-256 351-499 (644)
403 KOG1916 Nuclear protein, conta 90.2 0.12 2.7E-06 57.2 1.2 132 184-328 131-284 (1283)
404 PF07250 Glyoxal_oxid_N: Glyox 90.1 4.4 9.6E-05 39.0 11.6 78 211-294 49-138 (243)
405 PF07569 Hira: TUP1-like enhan 89.5 3.4 7.4E-05 39.0 10.2 70 191-260 15-98 (219)
406 PF14870 PSII_BNR: Photosynthe 89.3 25 0.00053 35.0 28.4 111 226-382 142-254 (302)
407 KOG4499 Ca2+-binding protein R 89.3 6.3 0.00014 38.1 11.6 86 146-237 162-262 (310)
408 PHA02713 hypothetical protein; 88.6 22 0.00048 38.1 16.9 203 10-228 301-545 (557)
409 PF14655 RAB3GAP2_N: Rab3 GTPa 88.5 4.2 9.2E-05 42.2 10.9 90 222-324 301-408 (415)
410 KOG1897 Damage-specific DNA bi 88.1 54 0.0012 37.5 19.6 180 24-215 751-941 (1096)
411 PF05935 Arylsulfotrans: Aryls 87.3 42 0.00091 35.3 18.0 149 164-328 127-315 (477)
412 KOG4499 Ca2+-binding protein R 87.0 30 0.00064 33.6 14.6 126 33-169 139-283 (310)
413 PF11715 Nup160: Nucleoporin N 86.7 1.4 3E-05 46.8 6.3 39 276-325 217-259 (547)
414 COG3823 Glutamine cyclotransfe 86.3 31 0.00068 32.9 15.3 184 147-378 51-247 (262)
415 COG3823 Glutamine cyclotransfe 86.2 14 0.00031 35.2 11.8 117 121-246 109-247 (262)
416 PF07676 PD40: WD40-like Beta 86.0 2.5 5.5E-05 28.1 5.2 29 226-254 6-38 (39)
417 PF12234 Rav1p_C: RAVE protein 85.9 23 0.0005 38.8 15.0 91 165-256 51-155 (631)
418 PF12234 Rav1p_C: RAVE protein 85.7 22 0.00047 39.0 14.7 96 199-312 41-154 (631)
419 PHA02713 hypothetical protein; 85.1 59 0.0013 34.9 19.7 216 24-257 273-533 (557)
420 PHA03098 kelch-like protein; P 84.1 60 0.0013 34.2 17.6 192 112-317 294-514 (534)
421 PF07676 PD40: WD40-like Beta 83.9 4.3 9.2E-05 27.0 5.6 19 276-294 11-29 (39)
422 PF05935 Arylsulfotrans: Aryls 83.9 61 0.0013 34.1 18.5 150 112-271 114-316 (477)
423 PF07250 Glyoxal_oxid_N: Glyox 83.2 15 0.00033 35.4 11.0 135 127-265 50-206 (243)
424 PHA03098 kelch-like protein; P 82.8 67 0.0015 33.8 19.7 144 112-261 342-515 (534)
425 TIGR03032 conserved hypothetic 82.6 24 0.00053 35.4 12.4 90 102-194 204-313 (335)
426 TIGR02276 beta_rpt_yvtn 40-res 82.5 5.5 0.00012 26.4 5.8 40 111-150 1-42 (42)
427 PF11715 Nup160: Nucleoporin N 82.2 7.1 0.00015 41.4 9.3 38 229-266 215-258 (547)
428 PF07569 Hira: TUP1-like enhan 82.0 7.9 0.00017 36.5 8.5 79 278-388 15-93 (219)
429 TIGR02276 beta_rpt_yvtn 40-res 81.7 6.2 0.00013 26.2 5.8 41 196-237 1-42 (42)
430 KOG2280 Vacuolar assembly/sort 81.7 25 0.00054 39.0 13.0 144 165-323 64-255 (829)
431 PF05694 SBP56: 56kDa selenium 81.6 31 0.00067 36.2 13.1 180 111-291 139-391 (461)
432 TIGR03074 PQQ_membr_DH membran 81.6 98 0.0021 34.9 25.9 169 152-324 194-432 (764)
433 PRK13684 Ycf48-like protein; P 81.2 62 0.0013 32.3 28.5 141 142-292 173-321 (334)
434 PF05694 SBP56: 56kDa selenium 81.0 69 0.0015 33.7 15.4 189 113-315 87-343 (461)
435 TIGR03118 PEPCTERM_chp_1 conse 80.5 67 0.0015 32.3 21.1 168 144-322 25-237 (336)
436 PF14655 RAB3GAP2_N: Rab3 GTPa 80.0 9 0.0002 39.8 8.8 78 102-182 309-407 (415)
437 PF08801 Nucleoporin_N: Nup133 79.7 19 0.00041 36.9 11.2 28 361-388 190-217 (422)
438 PF14870 PSII_BNR: Photosynthe 78.2 76 0.0016 31.6 28.8 138 142-291 145-293 (302)
439 PF13449 Phytase-like: Esteras 77.8 77 0.0017 31.4 17.5 100 189-290 88-231 (326)
440 PF10313 DUF2415: Uncharacteri 77.6 6 0.00013 27.9 4.6 31 102-132 2-34 (43)
441 KOG3630 Nuclear pore complex, 77.2 14 0.0003 42.8 9.6 103 189-293 159-263 (1405)
442 PF10168 Nup88: Nuclear pore c 77.2 38 0.00083 37.7 13.1 105 22-139 41-188 (717)
443 PHA02790 Kelch-like protein; P 76.9 1E+02 0.0022 32.4 18.7 189 112-318 271-474 (480)
444 PF08596 Lgl_C: Lethal giant l 76.9 95 0.0021 32.0 21.6 234 103-388 4-288 (395)
445 KOG1897 Damage-specific DNA bi 76.9 1.5E+02 0.0032 34.2 24.1 226 13-255 684-940 (1096)
446 PF08728 CRT10: CRT10; InterP 76.5 27 0.00059 38.7 11.6 103 112-215 113-245 (717)
447 PF14761 HPS3_N: Hermansky-Pud 76.1 73 0.0016 30.2 12.9 51 11-63 25-78 (215)
448 PF10395 Utp8: Utp8 family; I 76.0 99 0.0021 34.2 15.5 163 4-182 130-314 (670)
449 KOG4441 Proteins containing BT 75.1 1.3E+02 0.0028 32.6 19.5 195 13-222 285-505 (571)
450 TIGR03074 PQQ_membr_DH membran 72.1 1.8E+02 0.0038 32.9 24.4 149 115-264 262-485 (764)
451 KOG4441 Proteins containing BT 71.7 1.5E+02 0.0033 32.0 21.7 228 75-318 300-550 (571)
452 COG3204 Uncharacterized protei 70.4 1.2E+02 0.0026 30.3 19.6 183 103-290 88-300 (316)
453 KOG2247 WD40 repeat-containing 70.3 0.43 9.2E-06 50.0 -3.7 156 99-260 33-191 (615)
454 PF10313 DUF2415: Uncharacteri 68.4 15 0.00032 25.9 4.8 33 186-218 1-35 (43)
455 PF03088 Str_synth: Strictosid 68.0 38 0.00082 27.5 7.9 67 277-378 1-74 (89)
456 KOG1900 Nuclear pore complex, 67.3 63 0.0014 38.0 12.0 90 164-256 98-204 (1311)
457 PF14761 HPS3_N: Hermansky-Pud 65.7 41 0.00089 31.9 8.7 50 120-169 35-91 (215)
458 PF08596 Lgl_C: Lethal giant l 64.3 1.8E+02 0.0039 30.0 25.9 263 5-293 3-326 (395)
459 PF01436 NHL: NHL repeat; Int 63.9 23 0.0005 22.1 4.7 26 101-127 2-27 (28)
460 PF02333 Phytase: Phytase; In 63.4 1.9E+02 0.0041 29.9 25.2 196 111-322 66-299 (381)
461 PF03022 MRJP: Major royal jel 59.9 1.8E+02 0.0039 28.5 22.0 182 124-379 35-254 (287)
462 PF08728 CRT10: CRT10; InterP 59.5 77 0.0017 35.3 10.6 101 198-313 114-245 (717)
463 KOG2280 Vacuolar assembly/sort 56.7 3.3E+02 0.0072 30.6 15.3 55 208-263 64-118 (829)
464 PF10168 Nup88: Nuclear pore c 55.4 2.2E+02 0.0048 31.9 13.5 29 361-389 147-178 (717)
465 PHA02790 Kelch-like protein; P 54.5 2.8E+02 0.006 29.1 15.6 140 112-257 318-470 (480)
466 PF14727 PHTB1_N: PTHB1 N-term 54.3 2.8E+02 0.006 29.0 19.0 139 112-256 36-203 (418)
467 PF12657 TFIIIC_delta: Transcr 53.4 1.1E+02 0.0024 27.3 9.2 27 362-388 87-119 (173)
468 KOG1983 Tomosyn and related SN 51.2 2.8E+02 0.0061 32.3 13.9 27 103-130 38-64 (993)
469 KOG4659 Uncharacterized conser 50.4 5.1E+02 0.011 31.3 15.2 99 94-194 586-727 (1899)
470 smart00564 PQQ beta-propeller 49.1 47 0.001 20.7 4.4 29 10-38 3-31 (33)
471 KOG1900 Nuclear pore complex, 47.7 1.6E+02 0.0034 34.9 11.0 154 205-389 96-271 (1311)
472 PF14269 Arylsulfotran_2: Aryl 47.0 93 0.002 30.8 8.2 40 276-326 146-185 (299)
473 TIGR02608 delta_60_rpt delta-6 46.9 25 0.00054 26.1 3.1 19 362-380 2-20 (55)
474 PF12768 Rax2: Cortical protei 46.9 2.9E+02 0.0064 27.1 12.1 96 208-312 16-121 (281)
475 PF03022 MRJP: Major royal jel 46.6 2.9E+02 0.0063 27.0 14.9 63 166-228 35-108 (287)
476 COG1520 FOG: WD40-like repeat 45.9 3.2E+02 0.0069 27.2 12.5 109 198-323 68-180 (370)
477 COG2133 Glucose/sorbosone dehy 45.5 1.9E+02 0.004 30.1 10.3 98 229-380 67-196 (399)
478 TIGR03032 conserved hypothetic 45.2 3.4E+02 0.0075 27.5 16.5 129 102-240 153-316 (335)
479 PF05787 DUF839: Bacterial pro 44.8 62 0.0014 34.7 7.0 17 361-377 502-518 (524)
480 COG5167 VID27 Protein involved 42.2 61 0.0013 34.8 6.2 61 197-257 572-632 (776)
481 TIGR02608 delta_60_rpt delta-6 41.1 35 0.00076 25.3 3.2 18 276-293 3-20 (55)
482 PF01731 Arylesterase: Arylest 39.7 96 0.0021 25.0 5.8 28 277-314 57-84 (86)
483 PF05787 DUF839: Bacterial pro 39.7 76 0.0016 34.0 6.7 58 230-291 437-519 (524)
484 PF01731 Arylesterase: Arylest 39.3 74 0.0016 25.7 5.1 32 226-257 51-84 (86)
485 COG5167 VID27 Protein involved 38.3 43 0.00093 35.9 4.4 48 13-61 573-620 (776)
486 PF03088 Str_synth: Strictosid 38.0 1.2E+02 0.0026 24.6 6.1 48 206-254 35-85 (89)
487 PF10411 DsbC_N: Disulfide bon 37.5 32 0.0007 25.3 2.5 14 278-291 35-48 (57)
488 PF07202 Tcp10_C: T-complex pr 35.6 3.5E+02 0.0077 24.8 23.0 14 305-319 162-175 (179)
489 KOG1520 Predicted alkaloid syn 35.3 2.1E+02 0.0045 29.5 8.7 119 229-378 115-236 (376)
490 PF01011 PQQ: PQQ enzyme repea 34.8 61 0.0013 21.4 3.4 27 15-41 2-28 (38)
491 TIGR02171 Fb_sc_TIGR02171 Fibr 34.5 99 0.0021 35.3 6.7 68 13-86 319-387 (912)
492 PF14269 Arylsulfotran_2: Aryl 33.4 4.8E+02 0.01 25.7 23.3 70 143-215 145-219 (299)
493 KOG2377 Uncharacterized conser 33.4 2.2E+02 0.0047 30.4 8.4 31 229-259 67-98 (657)
494 PF13570 PQQ_3: PQQ-like domai 32.6 1.4E+02 0.003 19.7 4.9 21 197-217 20-40 (40)
495 PF15390 DUF4613: Domain of un 31.7 6.7E+02 0.014 27.7 11.9 68 180-256 14-89 (671)
496 PF14781 BBS2_N: Ciliary BBSom 31.4 3.7E+02 0.008 23.7 12.5 108 107-222 5-131 (136)
497 PF06739 SBBP: Beta-propeller 30.5 87 0.0019 21.1 3.5 22 361-382 13-34 (38)
498 PF12341 DUF3639: Protein of u 29.9 1E+02 0.0022 19.6 3.5 26 4-29 2-27 (27)
499 COG3211 PhoX Predicted phospha 29.1 1.4E+02 0.0031 32.3 6.6 18 361-378 554-571 (616)
500 TIGR03054 photo_alph_chp1 puta 28.5 71 0.0015 28.1 3.6 43 6-48 34-76 (135)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-55 Score=425.53 Aligned_cols=318 Identities=14% Similarity=0.218 Sum_probs=287.4
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
+.|.++.|+ +..||+++-|.|+||||+.|..++.|..+|. ++|-+|++||||+.||| |.-| .+|+||
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~-~WVlcvawsPDgk~iAS----G~~d------g~I~lw 184 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK-NWVLCVAWSPDGKKIAS----GSKD------GSIRLW 184 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc-cEEEEEEECCCcchhhc----cccC------CeEEEe
Confidence 579999999 8999999999999999999999999999985 99999999999999999 5677 899999
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEec----CCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcCCceE
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDD----VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIML 155 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~----pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~g~~l 155 (389)
|-.+|++. +.+|- .|..||.+++|-| |..++|||+|-||+|||||++.|+|++++.+ ..|.+|..--.+++
T Consensus 185 dpktg~~~-g~~l~--gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 185 DPKTGQQI-GRALR--GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI 261 (480)
T ss_pred cCCCCCcc-ccccc--CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE
Confidence 99999873 23343 4667788888864 5788999999999999999999999998874 58999999866677
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe-----------------------------------cCCCe
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE-----------------------------------QFNEK 200 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~-----------------------------------~~~~~ 200 (389)
+++ |.|+|||+|+...|.|+++|++|.|.|+.++.+. ..++.
T Consensus 262 ySg---S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er 338 (480)
T KOG0271|consen 262 YSG---SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER 338 (480)
T ss_pred Eec---CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence 665 6779999999999999999999999999998871 12346
Q ss_pred EEEEeCCCcEEEEECC-CCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCee
Q 016446 201 LLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTN 277 (389)
Q Consensus 201 l~~~s~D~tIklWd~~-tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~ 277 (389)
|+++|.|.|+-||+.. +.+++..+.||+.-|+.|.||||++++||+| |..|||||.. |+.+.+|.||-.+ |+
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~-----VY 413 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA-----VY 413 (480)
T ss_pred eEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce-----eE
Confidence 9999999999999965 5678999999999999999999999999999 9999999996 9999999999988 89
Q ss_pred EEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccc
Q 016446 278 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 357 (389)
Q Consensus 278 sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
.|++|.|.++|+|||.| .|+|+||+++.++...|.||.
T Consensus 414 qvawsaDsRLlVS~SkD-----------sTLKvw~V~tkKl~~DLpGh~------------------------------- 451 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKD-----------STLKVWDVRTKKLKQDLPGHA------------------------------- 451 (480)
T ss_pred EEEeccCccEEEEcCCC-----------ceEEEEEeeeeeecccCCCCC-------------------------------
Confidence 99999999999999876 899999999999999999998
Q ss_pred cccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 358 EALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 358 ~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+.|++|.+||||+.++||+.|+.+|||.
T Consensus 452 ---DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 ---DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ---ceEEEEEecCCCceeecCCCceEEEeec
Confidence 5899999999999999999999999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-51 Score=395.62 Aligned_cols=285 Identities=15% Similarity=0.217 Sum_probs=255.5
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDV 111 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~p 111 (389)
-+|-..+.||. +.|-|+.|+|+|..||+ |+-| .++||||+.+..+ +|+ ..|..|+.+|++| |
T Consensus 105 trCssS~~GH~-e~Vl~~~fsp~g~~l~t----GsGD------~TvR~WD~~TeTp-----~~t~KgH~~WVlcvaws-P 167 (480)
T KOG0271|consen 105 TRCSSSIAGHG-EAVLSVQFSPTGSRLVT----GSGD------TTVRLWDLDTETP-----LFTCKGHKNWVLCVAWS-P 167 (480)
T ss_pred ceeccccCCCC-CcEEEEEecCCCceEEe----cCCC------ceEEeeccCCCCc-----ceeecCCccEEEEEEEC-C
Confidence 56888899975 99999999999999999 6677 8999999988765 666 5688889999998 9
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEE-EEec--CCcEEEEEEcC------CceEEEEecCCCCeeEEEEEcCCCeEEEEEe
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTML-YSIS--DKHVQEIKISP------GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l-~tl~--~~~V~~vafS~------g~~la~~~~~s~d~tiklWd~~tG~~l~tl~ 182 (389)
||+.||||+-||+|++||.++|+++ .+|. ..+|.+++|-| ..+||++ +-|++|||||+.-|+|+.++.
T Consensus 168 Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~---skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 168 DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASS---SKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecc---cCCCCEEEEEccCceEEEEec
Confidence 9999999999999999999999976 5665 46999999985 4567665 556899999999999999999
Q ss_pred ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEc-----------CC------------
Q 016446 183 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL-----------YE------------ 239 (389)
Q Consensus 183 ~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs-----------pd------------ 239 (389)
+|+..|..|.+- ..+.|.++|.|+|||+|+...|.|.++|+||..+|+.++.| |-
T Consensus 245 gHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 245 GHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred cCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 999999999984 24788889999999999999999999999999999999987 22
Q ss_pred -------------CcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 240 -------------NQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 240 -------------g~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
|+.|+|++ |.|+-||+.. -+++..+.||+.. |+.|+|||||+||||+|.|
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l-----Vn~V~fSPd~r~IASaSFD--------- 388 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL-----VNHVSFSPDGRYIASASFD--------- 388 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh-----eeeEEECCCccEEEEeecc---------
Confidence 34599999 9999999984 6799999999986 8999999999999999986
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 304 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 304 ~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
++|||||-.+||.+.+|+||- ..|+.|++|.|.+.|+|||.|.|
T Consensus 389 --kSVkLW~g~tGk~lasfRGHv----------------------------------~~VYqvawsaDsRLlVS~SkDsT 432 (480)
T KOG0271|consen 389 --KSVKLWDGRTGKFLASFRGHV----------------------------------AAVYQVAWSADSRLLVSGSKDST 432 (480)
T ss_pred --cceeeeeCCCcchhhhhhhcc----------------------------------ceeEEEEeccCccEEEEcCCCce
Confidence 799999999999999999998 59999999999999999999999
Q ss_pred EEEccC
Q 016446 384 VHVWSN 389 (389)
Q Consensus 384 IrlW~~ 389 (389)
+|+|+.
T Consensus 433 LKvw~V 438 (480)
T KOG0271|consen 433 LKVWDV 438 (480)
T ss_pred EEEEEe
Confidence 999984
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-49 Score=390.80 Aligned_cols=280 Identities=15% Similarity=0.137 Sum_probs=252.1
Q ss_pred cCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecC-CCeEEEEe
Q 016446 41 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYS 119 (389)
Q Consensus 41 ~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p-dG~~Las~ 119 (389)
.....+|-.++||+|++.||++ +.+ ..+++|.++++.. .+.+. +|...+..+.|+|. ++..||||
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~----sws------G~~kvW~~~~~~~--~~~l~--gH~~~v~~~~fhP~~~~~~lat~ 237 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATG----SWS------GLVKVWSVPQCNL--LQTLR--GHTSRVGAAVFHPVDSDLNLATA 237 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEe----ecC------CceeEeecCCcce--eEEEe--ccccceeeEEEccCCCccceeee
Confidence 3345789999999999999995 466 7788999988854 33333 46666788999854 37899999
Q ss_pred cCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec
Q 016446 120 AQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 196 (389)
Q Consensus 120 s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~ 196 (389)
+.||++|||++.+-.++..|.+ ..|-.|+|+| |++|+++ +.|.|-||||++|++++.-.+||...|.+++|. |
T Consensus 238 s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta---sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~-~ 313 (459)
T KOG0272|consen 238 SADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA---SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ-P 313 (459)
T ss_pred ccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec---ccccchhhcccccchhhHhhcccccccceeEec-C
Confidence 9999999999988788887764 6899999995 9999886 566899999999999999999999999999998 7
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCC
Q 016446 197 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 274 (389)
Q Consensus 197 ~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~ 274 (389)
||..+++|+.|..-||||+++|.|+-.|.||.+.|.+|+|||+|..||||+ |+|+||||++ -.++.++.+|.+.
T Consensus 314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl---- 389 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL---- 389 (459)
T ss_pred CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch----
Confidence 888888899999999999999999999999999999999999999999999 9999999998 6789999999987
Q ss_pred CeeEEEECC-CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccccccee
Q 016446 275 NTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 353 (389)
Q Consensus 275 ~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
|..|.|+| -|++|+|+|.| +|+|||.-.+++|+++|.||+
T Consensus 390 -VS~Vk~~p~~g~fL~TasyD-----------~t~kiWs~~~~~~~ksLaGHe--------------------------- 430 (459)
T KOG0272|consen 390 -VSQVKYSPQEGYFLVTASYD-----------NTVKIWSTRTWSPLKSLAGHE--------------------------- 430 (459)
T ss_pred -hhheEecccCCeEEEEcccC-----------cceeeecCCCcccchhhcCCc---------------------------
Confidence 79999999 79999999875 899999999999999999999
Q ss_pred cccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 354 STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 354 ~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|.+|++||||+.|+|+|.|+|+|||.
T Consensus 431 -------~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 -------GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -------cceEEEEeccCCceEEEeccCceeeecc
Confidence 5899999999999999999999999996
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.4e-46 Score=366.53 Aligned_cols=271 Identities=16% Similarity=0.156 Sum_probs=237.9
Q ss_pred EEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeC--CCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spd--g~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
|.-.-|+ ++.||++|.+|++|+|+..+++.+++|.||. +.|-.+.|+|. +..|||++ .| .+++||
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~-~~v~~~~fhP~~~~~~lat~s----~D------gtvklw 246 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT-SRVGAAVFHPVDSDLNLATAS----AD------GTVKLW 246 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc-cceeeEEEccCCCccceeeec----cC------Cceeee
Confidence 3344555 9999999999999999999999999999985 89999999998 66899954 66 788899
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE--EEecCCcEEEEEEc-CCceEEEE
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKIS-PGIMLLIF 158 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l--~tl~~~~V~~vafS-~g~~la~~ 158 (389)
++.+-.+. +.+- .|..-+..|+|. |+|++|++++.|.|-||||+++++++ +..|...|.+|+|. ||..+++
T Consensus 247 ~~~~e~~l--~~l~--gH~~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t- 320 (459)
T KOG0272|consen 247 KLSQETPL--QDLE--GHLARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAAT- 320 (459)
T ss_pred ccCCCcch--hhhh--cchhhheeeeec-CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeec-
Confidence 98664442 1122 233445679997 99999999999999999999999954 55667799999999 6776665
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 238 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp 238 (389)
++.|..-||||++||.|++.|.+|...|.+|+|+ |.|..||+||.|+|+||||++...++.++.+|.+-|..|.|+|
T Consensus 321 --GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 321 --GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred --cCccchhheeecccCcEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc
Confidence 4777899999999999999999999999999998 6677777789999999999999999999999999999999999
Q ss_pred -CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 239 -ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 239 -dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
.|++|+|++ |+|+|||... +.++++|.||... |.++.+||||++|+|++.| .|||||.
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k-----V~s~Dis~d~~~i~t~s~D-----------RT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK-----VISLDISPDSQAIATSSFD-----------RTIKLWR 458 (459)
T ss_pred cCCeEEEEcccCcceeeecCCCcccchhhcCCccc-----eEEEEeccCCceEEEeccC-----------ceeeecc
Confidence 899999999 9999999996 9999999999987 8999999999999999875 8999995
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-42 Score=322.91 Aligned_cols=294 Identities=13% Similarity=0.164 Sum_probs=237.6
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc--ceeEe-eecccCceeEEEecC
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG--FALFE-SESLKWPGFVEFDDV 111 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~--~~l~~-~~~~~~~~~v~Fs~p 111 (389)
..-++++|. ++|..++..|.+..++.. ++.| ..+-+|++..-+...+ ++.|+ |+|+ +..|+.+ +
T Consensus 7 l~~tl~gh~-d~Vt~la~~~~~~~~l~s---asrD------k~ii~W~L~~dd~~~G~~~r~~~GHsH~--v~dv~~s-~ 73 (315)
T KOG0279|consen 7 LRGTLEGHT-DWVTALAIKIKNSDILVS---ASRD------KTIIVWKLTSDDIKYGVPVRRLTGHSHF--VSDVVLS-S 73 (315)
T ss_pred eeeeecCCC-ceEEEEEeecCCCceEEE---cccc------eEEEEEEeccCccccCceeeeeeccceE--ecceEEc-c
Confidence 445788875 999999999996544442 4577 8888998844333333 33343 4444 3678998 8
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec--CC
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL--LH 186 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~--~~ 186 (389)
||++..|+|.|+++|+||+++|++.+.| |...|.+|+|| |+.+++++ +.|+||+|||+. |+|..++..+ ..
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSG---SrDkTiklwnt~-g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSG---SRDKTIKLWNTL-GVCKYTIHEDSHRE 149 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecC---CCcceeeeeeec-ccEEEEEecCCCcC
Confidence 9999999999999999999999976555 56789999999 68888765 677999999986 5888888755 57
Q ss_pred ceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 187 RNKKVDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 187 ~~~~v~f~~~~-~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t 263 (389)
.|..|.|+|.. .-+|+++|+|+|+|+||+++-++.+++.||++.++.+++||||.+.|||+ ||.+.|||++ |+++.+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence 88999999543 56888899999999999999999999999999999999999999999999 9999999996 999999
Q ss_pred eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCc
Q 016446 264 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 343 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~ 343 (389)
|++. .. |++++|||+--.|+-+- +..|||||+.++.++.+|+---. +++
T Consensus 230 l~a~-~~-----v~sl~fspnrywL~~at------------~~sIkIwdl~~~~~v~~l~~d~~--------g~s----- 278 (315)
T KOG0279|consen 230 LEAF-DI-----VNSLCFSPNRYWLCAAT------------ATSIKIWDLESKAVVEELKLDGI--------GPS----- 278 (315)
T ss_pred ccCC-Ce-----EeeEEecCCceeEeecc------------CCceEEEeccchhhhhhcccccc--------ccc-----
Confidence 9754 33 89999999988887654 35799999999999999864321 110
Q ss_pred cccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+...-...++|||+||++|.+|..|+.||+|.
T Consensus 279 ------------~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 279 ------------SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ------------cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 001113567899999999999999999999997
No 6
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-43 Score=339.21 Aligned_cols=291 Identities=15% Similarity=0.207 Sum_probs=245.0
Q ss_pred ccccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 2 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 2 ~~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
-|+.|..|+|- --++|++++|+|||+||..||++.+.|.||. +.|.+|+|..-|++||++| .| -+++
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt-~sv~di~~~a~Gk~l~tcS----sD------l~~~ 175 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHT-DSVFDISFDASGKYLATCS----SD------LSAK 175 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccc-cceeEEEEecCccEEEecC----Cc------cchh
Confidence 37899999998 6677888899999999999999999999986 7899999999999999965 55 3488
Q ss_pred EeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCceEE
Q 016446 80 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLL 156 (389)
Q Consensus 80 l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~~la 156 (389)
+||..+- ......+-.+++. +.+|+|- |.|.+|+|++.|.|||.|++.+|.|++++.+ +||+.|+.+ ||.++|
T Consensus 176 LWd~~~~-~~c~ks~~gh~h~--vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A 251 (406)
T KOG0295|consen 176 LWDFDTF-FRCIKSLIGHEHG--VSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA 251 (406)
T ss_pred heeHHHH-HHHHHHhcCcccc--eeeEEEE-ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEE
Confidence 9997442 1011223333333 4679998 8999999999999999999999999999974 699999999 888887
Q ss_pred EEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEE
Q 016446 157 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 236 (389)
Q Consensus 157 ~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f 236 (389)
++ +.|.|+++|-+.+++|...|+.|.+.+..|+|.+ ... .....+. .+..
T Consensus 252 s~---s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap-~~~--~~~i~~a----------------t~~~-------- 301 (406)
T KOG0295|consen 252 SC---SNDQTLRVWVVATKQCKAELREHEHPVECIAWAP-ESS--YPSISEA----------------TGST-------- 301 (406)
T ss_pred ec---CCCceEEEEEeccchhhhhhhccccceEEEEecc-ccc--Ccchhhc----------------cCCC--------
Confidence 65 6779999999999999999999999999999973 211 0000000 0000
Q ss_pred cCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 237 LYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 237 spdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
..|+++.+++ |+|||+||++ |.||-||.||..| |.+++|+|-||||+|+.+ |+|+|+||++
T Consensus 302 -~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw-----Vr~~af~p~Gkyi~ScaD-----------Dktlrvwdl~ 364 (406)
T KOG0295|consen 302 -NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW-----VRGVAFSPGGKYILSCAD-----------DKTLRVWDLK 364 (406)
T ss_pred -CCccEEEeecccceEEEEeccCCeEEEEEecccce-----eeeeEEcCCCeEEEEEec-----------CCcEEEEEec
Confidence 1578999999 9999999997 9999999999999 799999999999999765 4999999999
Q ss_pred CCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 315 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 315 tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+++|+.++..|+ .-|++++|..+--+++|||-|.++|+|.
T Consensus 365 ~~~cmk~~~ah~----------------------------------hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 365 NLQCMKTLEAHE----------------------------------HFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cceeeeccCCCc----------------------------------ceeEEEecCCCCceEEeccccceeeeee
Confidence 999999999999 4899999999999999999999999995
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-41 Score=320.99 Aligned_cols=285 Identities=12% Similarity=0.176 Sum_probs=249.0
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 116 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L 116 (389)
++|.||. +.|.++-|+||.+.|+|+| .| ...-|||.-+..-.+..++ ...|+-.+||+ |.|+++
T Consensus 49 r~LkGH~-~Ki~~~~ws~Dsr~ivSaS----qD------GklIvWDs~TtnK~haipl----~s~WVMtCA~s-PSg~~V 112 (343)
T KOG0286|consen 49 RTLKGHL-NKIYAMDWSTDSRRIVSAS----QD------GKLIVWDSFTTNKVHAIPL----PSSWVMTCAYS-PSGNFV 112 (343)
T ss_pred EEecccc-cceeeeEecCCcCeEEeec----cC------CeEEEEEcccccceeEEec----CceeEEEEEEC-CCCCeE
Confidence 6899986 9999999999999999965 55 5666898766543222222 44577889998 999999
Q ss_pred EEecCCCeEEEEeCCCC--e----EEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce
Q 016446 117 TYSAQDSIYKVFDLKNY--T----MLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 188 (389)
Q Consensus 117 as~s~D~tiklWdl~~g--~----~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~ 188 (389)
|+|+-|...-|+++++- + .-+.+. ...+.++.|-|+..|+++ |.|+|.-|||+++|+.++.|.+|.+-|
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~---SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG---SGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEec---CCCceEEEEEcccceEEEEecCCcccE
Confidence 99999999999999854 2 224454 468999999976666675 567999999999999999999999999
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEecc
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 266 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~g 266 (389)
.+++++|.++..+++|+-|++.||||++.|.|+|+|.||...|++|.|-|+|.-|++|+ |+|.|++|++ .+.+..++
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys- 268 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS- 268 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-
Confidence 99999855889999999999999999999999999999999999999999999999999 9999999998 78888887
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccc
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
|.. .++.|++|+||..|++|..|..| .++.+||...|+.+..|.||.
T Consensus 269 ~~~--~~~gitSv~FS~SGRlLfagy~d-----------~~c~vWDtlk~e~vg~L~GHe-------------------- 315 (343)
T KOG0286|consen 269 HDS--IICGITSVAFSKSGRLLFAGYDD-----------FTCNVWDTLKGERVGVLAGHE-------------------- 315 (343)
T ss_pred cCc--ccCCceeEEEcccccEEEeeecC-----------CceeEeeccccceEEEeeccC--------------------
Confidence 333 23669999999999999998764 899999999999999999999
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
++|.+|..+|||.-|+|||.|.++|||.
T Consensus 316 --------------NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 316 --------------NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --------------CeeEEEEECCCCcEEEecchhHheeecC
Confidence 6999999999999999999999999994
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-38 Score=290.95 Aligned_cols=283 Identities=17% Similarity=0.284 Sum_probs=242.7
Q ss_pred eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeE
Q 016446 36 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKV 115 (389)
Q Consensus 36 l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~ 115 (389)
++++.+|. +.|.++.|+|+|+.|+++ +.| ..+++|++..++.. ..+ ..+...+..+.|+ |++++
T Consensus 2 ~~~~~~h~-~~i~~~~~~~~~~~l~~~----~~~------g~i~i~~~~~~~~~--~~~--~~~~~~i~~~~~~-~~~~~ 65 (289)
T cd00200 2 RRTLKGHT-GGVTCVAFSPDGKLLATG----SGD------GTIKVWDLETGELL--RTL--KGHTGPVRDVAAS-ADGTY 65 (289)
T ss_pred chHhcccC-CCEEEEEEcCCCCEEEEe----ecC------cEEEEEEeeCCCcE--EEE--ecCCcceeEEEEC-CCCCE
Confidence 45677764 899999999999999984 456 78999999877641 111 1233334579998 89999
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEE
Q 016446 116 LTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 192 (389)
Q Consensus 116 Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~ 192 (389)
|++++.|++|++||+.+++.+..+. ...|.+++|+| +.+++++ +.|+.|++||+.+++++..+..|...+..++
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS---SRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEe---cCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 9999999999999999888777765 35799999995 5666554 2458999999999999999998888899999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCC
Q 016446 193 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 270 (389)
Q Consensus 193 f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~ 270 (389)
|+ |++..+++++.|+.|++||+++++++..+..|...+.+++|+|+++.+++++ |+.|++||+. ++++..+++|...
T Consensus 143 ~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 221 (289)
T cd00200 143 FS-PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG 221 (289)
T ss_pred Ec-CcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc
Confidence 98 5566666667799999999999999999999999999999999999999888 9999999997 8999999888875
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccccc
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 350 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (389)
+.+++|+|+++++++++. |+.|++||+.+++++..+.+|.
T Consensus 222 -----i~~~~~~~~~~~~~~~~~-----------~~~i~i~~~~~~~~~~~~~~~~------------------------ 261 (289)
T cd00200 222 -----VNSVAFSPDGYLLASGSE-----------DGTIRVWDLRTGECVQTLSGHT------------------------ 261 (289)
T ss_pred -----eEEEEEcCCCcEEEEEcC-----------CCcEEEEEcCCceeEEEccccC------------------------
Confidence 799999999999998864 4899999999999999999887
Q ss_pred ceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 351 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 351 ~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|.+++|+|+++.|++++.|+.|++|+
T Consensus 262 ----------~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 ----------NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ----------CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 5899999999999999999999999996
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=335.37 Aligned_cols=291 Identities=17% Similarity=0.242 Sum_probs=250.0
Q ss_pred eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeE
Q 016446 36 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKV 115 (389)
Q Consensus 36 l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~ 115 (389)
..++.+++...|.++.|+|||+.|+++ +.| ..+++|+...++......+ .++...+..++|+ |||++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~----~~~------~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs-~d~~~ 217 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAA----SSD------GLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFS-PDGSY 217 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEc----cCC------CcEEEeecccccchhhccc--cccccceeeeEEC-CCCcE
Confidence 445666666889999999999998884 455 7888888866552111122 2344456789998 99999
Q ss_pred EEEecCCCeEEEEeC-CCCeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 116 LTYSAQDSIYKVFDL-KNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 116 Las~s~D~tiklWdl-~~g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
|++++.|++||+||+ ..+.+++++.+ ..|.+++|+ +|++++++ +.|++|||||+++|+|+.+|.+|.+.+..+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sg---s~D~tvriWd~~~~~~~~~l~~hs~~is~~ 294 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSG---SDDGTVRIWDVRTGECVRKLKGHSDGISGL 294 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEe---cCCCcEEEEeccCCeEEEeeeccCCceEEE
Confidence 999999999999999 56789999974 589999999 58777765 567999999999999999999999999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCe--EEEEcccCCCc--eEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEec
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMT--PSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 265 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~--~~~~l~gh~~~--v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~ 265 (389)
+|. +++..|++++.|++|+|||+.+++ |++++.++... ++.+.|+|+|++|+++. |+++|+||+. ++++.++.
T Consensus 295 ~f~-~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 295 AFS-PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred EEC-CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec
Confidence 998 789999999999999999999999 78898888777 99999999999999999 9999999997 99999999
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
+|...+ .| +.+..++++|+++.+|+.| ++|++||+.+++.++.+.+|..
T Consensus 374 ~~~~~~-~~-~~~~~~~~~~~~i~sg~~d-----------~~v~~~~~~s~~~~~~l~~h~~------------------ 422 (456)
T KOG0266|consen 374 GHSNLV-RC-IFSPTLSTGGKLIYSGSED-----------GSVYVWDSSSGGILQRLEGHSK------------------ 422 (456)
T ss_pred ccCCcc-ee-EecccccCCCCeEEEEeCC-----------ceEEEEeCCccchhhhhcCCCC------------------
Confidence 998752 23 4677779999999999875 9999999999999999999931
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEec--CCCcEEEccC
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVHVWSN 389 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs--~D~tIrlW~~ 389 (389)
..|..++++|..+++++++ .|+.|++|..
T Consensus 423 ---------------~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 423 ---------------AAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ---------------CceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 4899999999999999999 7999999963
No 10
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-38 Score=347.49 Aligned_cols=315 Identities=16% Similarity=0.173 Sum_probs=246.2
Q ss_pred CceEEEEecccceeeeeeecC----CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC---Cccee
Q 016446 22 SGVCAAFSRETNRRICFLNVS----PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD---SGFAL 94 (389)
Q Consensus 22 ~gtiklW~~~tg~~l~tl~~~----~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~---~~~~l 94 (389)
+|.+|+|+..+-+....+..+ |.+.|.+|+|+|+|+.||+ ++.| ..++||++...... ...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~lat----gg~D------~~I~iwd~~~~~~~~~~~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFAT----AGVN------KKIKIFECESIIKDGRDIHYPV 526 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEE----EeCC------CEEEEEECCcccccccccccce
Confidence 778999998654444333321 4689999999999999999 5577 78899987432110 00111
Q ss_pred EeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 95 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 95 ~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
........+.+++|+++++.+||+++.|++|+|||+.+++++..+. ...|++|+|+| +.+|+++ +.|++|++|
T Consensus 527 ~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg---s~Dg~v~iW 603 (793)
T PLN00181 527 VELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASG---SDDGSVKLW 603 (793)
T ss_pred EEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEE---cCCCEEEEE
Confidence 1111223356799986678999999999999999999999888775 46899999994 6788776 456899999
Q ss_pred EcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe-EEEEcccCCCceEEEEEcCCCcEEEEEc-C
Q 016446 171 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-N 248 (389)
Q Consensus 171 d~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~-~~~~l~gh~~~v~sv~fspdg~~laS~s-D 248 (389)
|+.+++++.++..+ ..+..+.|.++++..+++++.|++|++||+++++ ++.++.+|...|..+.|+ ++.+|+|++ |
T Consensus 604 d~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D 681 (793)
T PLN00181 604 SINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD 681 (793)
T ss_pred ECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC
Confidence 99999999999865 6789999986778889999999999999998876 577889999999999997 678899998 9
Q ss_pred CeEEEEeCC-------CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 249 RTVAVWNFR-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 249 ~tIklWd~~-------G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
++|||||+. ++++.++.+|... ++.++|+|+|++||+|+.| ++|+||+...++.+..
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~-----i~~v~~s~~~~~lasgs~D-----------~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNV-----KNFVGLSVSDGYIATGSET-----------NEVFVYHKAFPMPVLS 745 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCC-----eeEEEEcCCCCEEEEEeCC-----------CEEEEEECCCCCceEE
Confidence 999999985 3688999999876 7899999999999999865 9999999877765544
Q ss_pred ecCCC-CCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 322 INATN-CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 322 l~gH~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+.-.. +... .+ ....+...|.+|+|+|+|++|++|+.||+|++|+.
T Consensus 746 ~~~~~~~~~~--------------------~~--~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 746 YKFKTIDPVS--------------------GL--EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EecccCCccc--------------------cc--ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 32211 0000 00 01122257999999999999999999999999984
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.7e-40 Score=338.90 Aligned_cols=350 Identities=12% Similarity=0.149 Sum_probs=279.8
Q ss_pred cccEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCE--EEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDS--LITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~--l~s~s~~~~~d~~~l~~~~~~l 80 (389)
+.-+.++...+-.+|++..||.+++||...+.|+..|.||. ..|.++.|.|+=.+ |++ |..| .++++
T Consensus 107 Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g-GvVssl~F~~~~~~~lL~s----g~~D------~~v~v 175 (775)
T KOG0319|consen 107 PVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG-GVVSSLLFHPHWNRWLLAS----GATD------GTVRV 175 (775)
T ss_pred CeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCC-ceEEEEEeCCccchhheee----cCCC------ceEEE
Confidence 34455555669999999999999999999999999999987 99999999999665 444 7788 89999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-C-----Cc
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-P-----GI 153 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~-----g~ 153 (389)
|++.++.. -...+ ..|..++.+++|+ +|+..+.+++.|+.+.|||+.+++++.+++ -+.+.++++- . |+
T Consensus 176 wnl~~~~t--cl~~~-~~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~ 251 (775)
T KOG0319|consen 176 WNLNDKRT--CLHTM-ILHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGE 251 (775)
T ss_pred EEcccCch--HHHHH-Hhhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcce
Confidence 99986654 01111 3577788999998 899999999999999999999999999998 4567787777 3 45
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEEE-----------------------------------------------------
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLKV----------------------------------------------------- 180 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~t----------------------------------------------------- 180 (389)
++.+. +.++.+++||.++|+|+++
T Consensus 252 ~~~Ta---G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~D 328 (775)
T KOG0319|consen 252 YIITA---GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILD 328 (775)
T ss_pred EEEEe---cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhee
Confidence 66665 3447888888888777653
Q ss_pred --------------------------------EeecCCceeEEEEEecCCC-----------------------------
Q 016446 181 --------------------------------FYHLLHRNKKVDFIEQFNE----------------------------- 199 (389)
Q Consensus 181 --------------------------------l~~~~~~~~~v~f~~~~~~----------------------------- 199 (389)
+.+|...+.+++.. .+|.
T Consensus 329 m~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~~~~a~~ 407 (775)
T KOG0319|consen 329 MKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA 407 (775)
T ss_pred eeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeec-ccCcEEEEecCCceEEEEEecCCcchhhhhhhh
Confidence 22333334444411 1122
Q ss_pred ------------------eEEEEeCCCcEEEEECCCCe---------EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeE
Q 016446 200 ------------------KLLVKQENENLQILDVRNAE---------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 251 (389)
Q Consensus 200 ------------------~l~~~s~D~tIklWd~~tg~---------~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tI 251 (389)
.++++|.|+|||+|++..-+ |..+-..|.+.|++|+.+|+.+++|||| |+|.
T Consensus 408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta 487 (775)
T KOG0319|consen 408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA 487 (775)
T ss_pred cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce
Confidence 44555666666666654311 1123467999999999999999999999 9999
Q ss_pred EEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCC
Q 016446 252 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 330 (389)
Q Consensus 252 klWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~ 330 (389)
|||+++ ++++.+|.||.-. ||+|.|+|.-|.+|++|.| +|||||.+.+..|++||.||+.+|.
T Consensus 488 KiW~le~~~l~~vLsGH~RG-----vw~V~Fs~~dq~laT~SgD-----------~TvKIW~is~fSClkT~eGH~~aVl 551 (775)
T KOG0319|consen 488 KIWDLEQLRLLGVLSGHTRG-----VWCVSFSKNDQLLATCSGD-----------KTVKIWSISTFSCLKTFEGHTSAVL 551 (775)
T ss_pred eeecccCceEEEEeeCCccc-----eEEEEeccccceeEeccCC-----------ceEEEEEeccceeeeeecCccceeE
Confidence 999996 9999999999876 8999999999999998765 8999999999999999999998877
Q ss_pred cccccCCCC-------CCCccccc--cccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 331 VDDELGSSS-------TGKSKKLN--KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 331 ~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
-+.|.+.+- .| -.|+| |+.+|..++.+|-+.||+++-+|++.+++||+.|+.|-+|.
T Consensus 552 ra~F~~~~~qliS~~adG-liKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 552 RASFIRNGKQLISAGADG-LIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eeeeeeCCcEEEeccCCC-cEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 666666643 33 35666 68999999999999999999999999999999999999995
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-40 Score=320.84 Aligned_cols=234 Identities=15% Similarity=0.198 Sum_probs=214.5
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC-Ce
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED-GT 176 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t-G~ 176 (389)
..+..|-|. |+--+.|+++.|+|||+||..||++..+|++ +.|.+|+|+ -|.+||++ +.|-+|+|||.++ -+
T Consensus 109 ~~vt~v~~h-p~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tc---SsDl~~~LWd~~~~~~ 184 (406)
T KOG0295|consen 109 SSVTRVIFH-PSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATC---SSDLSAKLWDFDTFFR 184 (406)
T ss_pred cceeeeeec-cCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEec---CCccchhheeHHHHHH
Confidence 345668897 9999999999999999999999999888874 579999999 68888876 4457799999887 67
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
|++++.+|.+.+-+|.|. |-+++|++.+.|+|||.|++.+|.|+.++.+|..+|..|..+.||.++||++ |+|+++|=
T Consensus 185 c~ks~~gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred HHHHhcCcccceeeEEEE-ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 999999999999999999 6789999999999999999999999999999999999999999999999999 99999999
Q ss_pred CC-CcEEEEeccCcCCcCCCCeeEEEECCC---------------CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 256 FR-GELVTSFEDHLLWHPDCNTNNIYITSD---------------QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 256 ~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd---------------G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
+. ++|+..|.+|+.+ |..++|-|. |++++|+|. |+|||+||+.||.|+
T Consensus 264 ~~t~~~k~~lR~hEh~-----vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr-----------DktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 264 VATKQCKAELREHEHP-----VECIAWAPESSYPSISEATGSTNGGQVLGSGSR-----------DKTIKIWDVSTGMCL 327 (406)
T ss_pred eccchhhhhhhccccc-----eEEEEecccccCcchhhccCCCCCccEEEeecc-----------cceEEEEeccCCeEE
Confidence 96 9999999999998 788888774 478888765 599999999999999
Q ss_pred EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 320 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 320 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
-||.||. ++|..++|+|-|++|+|..+|+++|+||.
T Consensus 328 ~tL~ghd----------------------------------nwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 328 FTLVGHD----------------------------------NWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred EEEeccc----------------------------------ceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 9999998 69999999999999999999999999984
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.9e-40 Score=342.19 Aligned_cols=276 Identities=14% Similarity=0.170 Sum_probs=233.3
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 112 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd 112 (389)
.-|+.|+...+ ..+.|..||+|+.+||. |-.| -.|++|.+..-++ .+|-. .. +
T Consensus 368 Sic~YT~~nt~-~~v~ca~fSddssmlA~----Gf~d------S~i~~~Sl~p~kl---~~lk~--------~~-----~ 420 (707)
T KOG0263|consen 368 SICMYTFHNTY-QGVTCAEFSDDSSMLAC----GFVD------SSVRVWSLTPKKL---KKLKD--------AS-----D 420 (707)
T ss_pred cEEEEEEEEcC-CcceeEeecCCcchhhc----cccc------cEEEEEecchhhh---ccccc--------hh-----h
Confidence 45778887765 78999999999998888 5566 6777888754443 11211 11 1
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCcee
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 189 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~ 189 (389)
...+-+.+.|-.+..-|...+....++ |.+.|.+++||| ..+|++ +|+|.++|||.+.|-.|+..++||..+|+
T Consensus 421 l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlS---cSED~svRLWsl~t~s~~V~y~GH~~PVw 497 (707)
T KOG0263|consen 421 LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLS---CSEDSSVRLWSLDTWSCLVIYKGHLAPVW 497 (707)
T ss_pred hccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceee---ccCCcceeeeecccceeEEEecCCCccee
Confidence 112223444555666676555444444 578999999996 555554 46779999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccC
Q 016446 190 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 267 (389)
Q Consensus 190 ~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh 267 (389)
.|.|+ |.|-++|++|.|+|.+||....-.+++.+.||...|.+|.|.|+..|+|+|| |.|||+||+. |..++.|.||
T Consensus 498 dV~F~-P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH 576 (707)
T KOG0263|consen 498 DVQFA-PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH 576 (707)
T ss_pred eEEec-CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC
Confidence 99998 7899999999999999999999999999999999999999999999999999 9999999996 9999999999
Q ss_pred cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccc
Q 016446 268 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 347 (389)
Q Consensus 268 ~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
..+ |.+|+|||+|++||||+. |+.|+|||+.+|+.+..|.+|+
T Consensus 577 ~~~-----V~al~~Sp~Gr~LaSg~e-----------d~~I~iWDl~~~~~v~~l~~Ht--------------------- 619 (707)
T KOG0263|consen 577 KGP-----VTALAFSPCGRYLASGDE-----------DGLIKIWDLANGSLVKQLKGHT--------------------- 619 (707)
T ss_pred CCc-----eEEEEEcCCCceEeeccc-----------CCcEEEEEcCCCcchhhhhccc---------------------
Confidence 998 899999999999999876 4999999999999999999998
Q ss_pred cccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 348 KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 348 ~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++|.||+||..||+|+.|++|+|||.
T Consensus 620 -------------~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 620 -------------GTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred -------------CceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 58999999999999999999999999984
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.8e-38 Score=294.33 Aligned_cols=277 Identities=11% Similarity=0.172 Sum_probs=236.1
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcce
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 93 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~ 93 (389)
-+||++++|.|||+|...||+|.+|++.. +..|+.+-..||++.||.+ +. ..|||+|+.+++.+ +
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~-dsqVNrLeiTpdk~~LAaa----~~-------qhvRlyD~~S~np~---P 75 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHP-DSQVNRLEITPDKKDLAAA----GN-------QHVRLYDLNSNNPN---P 75 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecC-ccceeeEEEcCCcchhhhc----cC-------CeeEEEEccCCCCC---c
Confidence 37999999999999999999999999965 5899999999999999984 44 68999999999874 3
Q ss_pred eEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCc-eEEEEecCCCCeeEEEE
Q 016446 94 LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 94 l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~-~la~~~~~s~d~tiklW 170 (389)
+.+ ..+...+.+|.|- -||+.+.+||+|||+||||+..-.|.+.++ ...|.+|...|+| -|.++ ..++.|++|
T Consensus 76 v~t~e~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~---dqsg~irvW 151 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISG---DQSGNIRVW 151 (311)
T ss_pred eeEEeccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEee---cCCCcEEEE
Confidence 333 2355668899996 899999999999999999999988887776 4799999999755 44443 445899999
Q ss_pred EcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe------EEEEcccCCCceEEEEEcCCCcEE
Q 016446 171 SIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE------LMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 171 d~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~------~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
|+.+-.|-..|. ...-.+.++... |||.+++++-.-|+..+|++-++. ++..++.|+..+..+.||||+++|
T Consensus 152 Dl~~~~c~~~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 152 DLGENSCTHELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred EccCCccccccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence 999887776664 333455677765 788888888899999999997653 466688999999999999999999
Q ss_pred EEEc-CCeEEEEeCCC--cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEE
Q 016446 244 LTFR-NRTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 320 (389)
Q Consensus 244 aS~s-D~tIklWd~~G--~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~ 320 (389)
|++| |.|+|||+.++ ++-..|+||+.| ||..+||.||+||++||. |+++||||+..|+.++
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rW-----vWdc~FS~dg~YlvTass-----------d~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRW-----VWDCAFSADGEYLVTASS-----------DHTARLWDLSAGKEVR 294 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCce-----EEeeeeccCccEEEecCC-----------CCceeecccccCceee
Confidence 9998 99999999985 455789999999 899999999999999865 5899999999999999
Q ss_pred EecCCC
Q 016446 321 KINATN 326 (389)
Q Consensus 321 tl~gH~ 326 (389)
..+||-
T Consensus 295 qy~gh~ 300 (311)
T KOG0315|consen 295 QYQGHH 300 (311)
T ss_pred ecCCcc
Confidence 999997
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-38 Score=296.51 Aligned_cols=278 Identities=11% Similarity=0.128 Sum_probs=234.6
Q ss_pred ccEEEEEee---ccEEEEEecCceEEEEecc-----cceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceee
Q 016446 4 TKVIEIVAA---RDIVFALAHSGVCAAFSRE-----TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 75 (389)
Q Consensus 4 ~~v~~i~~~---~~~~a~~~~~gtiklW~~~-----tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~ 75 (389)
-.|.+|... -+++.++++|.++-+|++. .|...+.|.|| +..|..|+.+|||++-.| ++.|
T Consensus 16 d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH-sH~v~dv~~s~dg~~alS----~swD------ 84 (315)
T KOG0279|consen 16 DWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH-SHFVSDVVLSSDGNFALS----ASWD------ 84 (315)
T ss_pred ceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeecc-ceEecceEEccCCceEEe----cccc------
Confidence 357777666 7899999999999999864 48889999996 599999999999999988 5688
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec----CCcEEEEEEcC
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKHVQEIKISP 151 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~----~~~V~~vafS~ 151 (389)
+.+++||+.+|+. ++ .|- .|..-+.+|+|| ||.+.|+|||.|+||||||. -|.|.++++ .+||.+|.|||
T Consensus 85 ~~lrlWDl~~g~~--t~-~f~-GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt-~g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 85 GTLRLWDLATGES--TR-RFV-GHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNT-LGVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred ceEEEEEecCCcE--EE-EEE-ecCCceEEEEec-CCCceeecCCCcceeeeeee-cccEEEEEecCCCcCcEEEEEEcC
Confidence 9999999999975 33 343 355557889998 89999999999999999997 677888876 36999999997
Q ss_pred C---ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC
Q 016446 152 G---IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 228 (389)
Q Consensus 152 g---~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~ 228 (389)
. -+|++ .+.|+|+|+||+.+-++.+++.+|++.+..|+++ |||...++|+.|+.+-|||+..++++.++. |.
T Consensus 159 ~~~~p~Ivs---~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~k~lysl~-a~ 233 (315)
T KOG0279|consen 159 NESNPIIVS---ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AF 233 (315)
T ss_pred CCCCcEEEE---ccCCceEEEEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCCceeEecc-CC
Confidence 5 35654 4778999999999999999999999999999998 899999999999999999999999999865 77
Q ss_pred CceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEec----cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 229 MTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~----gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
..|.+++|+|+--.|+.+-+..|||||++ +.++.+|+ |......+.+..++|||+||+.|.+|..|
T Consensus 234 ~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td--------- 304 (315)
T KOG0279|consen 234 DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD--------- 304 (315)
T ss_pred CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC---------
Confidence 89999999999888877778889999997 87877665 22111111234799999999999999875
Q ss_pred CCCeEEEEeCC
Q 016446 304 SAGSINVSSIL 314 (389)
Q Consensus 304 ~D~tIklWd~~ 314 (389)
+.||+|.+.
T Consensus 305 --~~irv~qv~ 313 (315)
T KOG0279|consen 305 --NVIRVWQVA 313 (315)
T ss_pred --CcEEEEEee
Confidence 899999864
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.3e-38 Score=323.01 Aligned_cols=237 Identities=20% Similarity=0.326 Sum_probs=212.3
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCe--EEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEc-CCCe
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSI-EDGT 176 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~-~tG~ 176 (389)
+..+.|+ |||+.|++++.|+++++|++.+++ +++++. ...|.+++|| +|..++++ +.|++||+||+ ..|.
T Consensus 162 v~~~~fs-~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~---s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 162 VTCVDFS-PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG---SDDKTLRIWDLKDDGR 237 (456)
T ss_pred eEEEEEc-CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEe---cCCceEEEeeccCCCe
Confidence 4558998 899999999999999999998888 677763 5689999999 57788775 56799999999 6779
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
++++|.+|...+.+++|+ |.+..+++++.|++|||||+++|+|++.|.+|.+.|.+++|+|||++|++++ |++|++||
T Consensus 238 ~~~~l~gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred EEEEecCCCCceEEEEec-CCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 999999999999999999 6678899999999999999999999999999999999999999999999999 99999999
Q ss_pred CC-Cc--EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcc
Q 016446 256 FR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 332 (389)
Q Consensus 256 ~~-G~--~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~ 332 (389)
+. |+ |++++.++.... -|+.+.|||+|++|++++.| +++|+||+..++++.+..+|...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~---~~~~~~fsp~~~~ll~~~~d-----------~~~~~w~l~~~~~~~~~~~~~~~---- 378 (456)
T KOG0266|consen 317 LETGSKLCLKLLSGAENSA---PVTSVQFSPNGKYLLSASLD-----------RTLKLWDLRSGKSVGTYTGHSNL---- 378 (456)
T ss_pred CCCCceeeeecccCCCCCC---ceeEEEECCCCcEEEEecCC-----------CeEEEEEccCCcceeeecccCCc----
Confidence 97 88 688999888752 17999999999999998765 89999999999999999999830
Q ss_pred cccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 333 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
...+.+..++++|+.++||++|+.|++|+.
T Consensus 379 ---------------------------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 379 ---------------------------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred ---------------------------ceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 025667788999999999999999999983
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=312.77 Aligned_cols=336 Identities=13% Similarity=0.144 Sum_probs=270.1
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
++|....|- -..||++-.+|...|+.+-.=.+++.|.-.. ..|.+++||.-|+.||. |+.. +.++-+|
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~-~~I~t~~~N~tGDWiA~----g~~k-----lgQLlVw 335 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD-QKILTVSFNSTGDWIAF----GCSK-----LGQLLVW 335 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc-ceeeEEEecccCCEEEE----cCCc-----cceEEEE
Confidence 566666666 6789999999999999998678999998875 89999999999999988 4443 4577778
Q ss_pred EeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEE
Q 016446 82 YIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~ 157 (389)
+++.-.. ++. +.|+..+.++++| ||||++|+|+.|+.|||||...|-|+.|+. ...|.+|.|+ .|+.+++
T Consensus 336 eWqsEsY-----VlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~lls 409 (893)
T KOG0291|consen 336 EWQSESY-----VLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLS 409 (893)
T ss_pred Eeeccce-----eeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEE
Confidence 7776554 333 4567777889998 999999999999999999999999999996 4689999999 7888887
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEcccCCCceEEEEE
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIF 236 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f 236 (389)
+ +-|+|||.||+..+++.+||+.......+.-...|.|+.+.+|+ ..-.|.+|+++||+++.+|.||.++|.+++|
T Consensus 410 s---SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 410 S---SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred e---ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 6 56689999999999999999865444433333336678888877 4478999999999999999999999999999
Q ss_pred cCCCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 237 LYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 237 spdg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
+|+|+.|||+| |+|||+||+- ...+.+|+-... |.+|+|+|||+.||.+.-| |.|.+||+
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd------vl~vsfrPdG~elaVaTld-----------gqItf~d~ 549 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD------VLAVSFRPDGKELAVATLD-----------GQITFFDI 549 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeEeeccc------eeEEEEcCCCCeEEEEEec-----------ceEEEEEh
Confidence 99999999999 9999999983 447778873322 7999999999999998765 99999999
Q ss_pred CCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 314 LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 314 ~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+.+..+.++.|-.+...+ |.. .+ ++-.--....+..+++.||+||+.|.+|++.+.|.|++.
T Consensus 550 ~~~~q~~~IdgrkD~~~g----R~~-------~D---~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 550 KEAVQVGSIDGRKDLSGG----RKE-------TD---RITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred hhceeeccccchhhcccc----ccc-------cc---eeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 999999888875431000 000 00 000000111158999999999999999999999999863
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=307.69 Aligned_cols=354 Identities=12% Similarity=0.143 Sum_probs=297.4
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEeccccee--eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRR--ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~--l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
.|..|-++ ...++++|+|-++|||..+..+. .+.+++|. +.|..-+|..|...|.+++. | ..+.+
T Consensus 147 di~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHk-d~VvacfF~~~~~~l~tvsk----d------G~l~~ 215 (893)
T KOG0291|consen 147 DITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHK-DYVVACFFGANSLDLYTVSK----D------GALFV 215 (893)
T ss_pred ceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCC-cceEEEEeccCcceEEEEec----C------ceEEE
Confidence 46777888 78999999999999999875555 66788875 89999999999999999864 4 34444
Q ss_pred eEec--c---------------------CCCCCccee-Ee-------eecccCceeEEEecCCCeEEEEecCCCeEEEEe
Q 016446 81 EYIR--R---------------------GKPDSGFAL-FE-------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 129 (389)
Q Consensus 81 ~~i~--~---------------------g~~~~~~~l-~~-------~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWd 129 (389)
|... - |+. ...+. |. .+...-+.+.+|. |.-.+||.|=..|...|+.
T Consensus 216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Ee-k~~~~~~~k~~k~~ln~~~~kvtaa~fH-~~t~~lvvgFssG~f~Lye 293 (893)
T KOG0291|consen 216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEE-KTHKIFWYKTKKHYLNQNSSKVTAAAFH-KGTNLLVVGFSSGEFGLYE 293 (893)
T ss_pred EEecCCCcccccccccccccccccccccchh-hhcceEEEEEEeeeecccccceeeeecc-CCceEEEEEecCCeeEEEe
Confidence 4332 1 111 01111 11 0111345678997 8888999999999999999
Q ss_pred CCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeC
Q 016446 130 LKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE 206 (389)
Q Consensus 130 l~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~ 206 (389)
+..-.+++.|+ +..|..++|+ -|.+||.+++. =+.+-+|+.++-.-+...++|...+.+++++ |||+.|++|++
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--lgQLlVweWqsEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~e 370 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--LGQLLVWEWQSESYVLKQQGHSDRITSLAYS-PDGQLIATGAE 370 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCc--cceEEEEEeeccceeeeccccccceeeEEEC-CCCcEEEeccC
Confidence 99999999887 5899999999 89999998544 3688999999888888888999999999998 89999999999
Q ss_pred CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 207 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 207 D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
|+.|||||.++|-|+.|+..|+..|.+|.|+..|+.++|+| |||||.||+. +++.+||...... .-.+||..|.
T Consensus 371 DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~----QfscvavD~s 446 (893)
T KOG0291|consen 371 DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI----QFSCVAVDPS 446 (893)
T ss_pred CCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce----eeeEEEEcCC
Confidence 99999999999999999999999999999999999999999 9999999996 9999999875442 2578999999
Q ss_pred CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceeccccc------
Q 016446 285 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE------ 358 (389)
Q Consensus 285 G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 358 (389)
|..+..|+.|. =-|.+|+++|||++-.|.||++.+.+-.+.+.++..++.++|+|.++|+....
T Consensus 447 GelV~AG~~d~----------F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt 516 (893)
T KOG0291|consen 447 GELVCAGAQDS----------FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET 516 (893)
T ss_pred CCEEEeeccce----------EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee
Confidence 99999998873 57999999999999999999987777778888889999999999999988775
Q ss_pred --ccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 359 --ALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 359 --~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
....|.+|+|+|||+.||.+.-||.|.+||
T Consensus 517 l~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 517 LEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred EeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 334788999999999999999999999997
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.1e-37 Score=321.31 Aligned_cols=318 Identities=12% Similarity=0.124 Sum_probs=240.3
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
.|.+--|+ +..+|.+.-|-.|++|.+ +.+-|+.+.... .+.- || ..+ +| -..+.-|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl-~p~kl~~lk~~~--~l~~----~d---~~s------ad------~~~~~~D 437 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSL-TPKKLKKLKDAS--DLSN----ID---TES------AD------VDVDMLD 437 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEec-chhhhccccchh--hhcc----cc---ccc------cc------hhhhhcc
Confidence 45566677 779999999999999999 577888888653 1111 11 111 22 0011111
Q ss_pred eccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEcC-CceEEEEe
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISP-GIMLLIFN 159 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS~-g~~la~~~ 159 (389)
-..+.. ...|. .|.+.+.+++|+ |+.++|+|+|.|++||||.+.+-.|+-.. |..+||.|+|+| |-++|++
T Consensus 438 ~~~~~~--~~~L~--GH~GPVyg~sFs-Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFata- 511 (707)
T KOG0263|consen 438 DDSSGT--SRTLY--GHSGPVYGCSFS-PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATA- 511 (707)
T ss_pred ccCCce--eEEee--cCCCceeeeeec-ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEec-
Confidence 111111 12244 366677899998 99999999999999999999998887555 457999999997 8888876
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE 239 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd 239 (389)
+.|+|.|||....-+.++.|.+|..-+..|.|. |..-++++||.|+|+|+||+.+|.+++.|.||..+|.+++|||+
T Consensus 512 --s~D~tArLWs~d~~~PlRifaghlsDV~cv~FH-PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 512 --SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFH-PNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC 588 (707)
T ss_pred --CCCceeeeeecccCCchhhhcccccccceEEEC-CcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC
Confidence 667999999999999999999999999999999 66789999999999999999999999999999999999999999
Q ss_pred CcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 240 NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 240 g~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
|++||||+ |+.|+|||+. |+++..|.+|.+- |.++.||+||..||||+.| .+|++||+..-.
T Consensus 589 Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t-----i~SlsFS~dg~vLasgg~D-----------nsV~lWD~~~~~ 652 (707)
T KOG0263|consen 589 GRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT-----IYSLSFSRDGNVLASGGAD-----------NSVRLWDLTKVI 652 (707)
T ss_pred CceEeecccCCcEEEEEcCCCcchhhhhcccCc-----eeEEEEecCCCEEEecCCC-----------CeEEEEEchhhc
Confidence 99999999 9999999996 8999999999664 8999999999999999875 899999987644
Q ss_pred EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 318 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 318 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
+. -..+|-....... +.+-+....+..+....-.+|..|-|..-.-.|+.|.
T Consensus 653 ~~-~~~~~~~~~~~~~---------~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~ 704 (707)
T KOG0263|consen 653 EL-LNLGHISTSNSAI---------TQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGP 704 (707)
T ss_pred cc-ccccccccccccc---------cccCCCCcceeeeeeecCceEEEEEEeccceeEEecc
Confidence 43 1113321000000 0000111223333333335999999988776666664
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.3e-36 Score=298.50 Aligned_cols=281 Identities=14% Similarity=0.195 Sum_probs=239.8
Q ss_pred eecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEeEecc--CCCCCcceeEee---------ecccCceeE
Q 016446 39 LNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRR--GKPDSGFALFES---------ESLKWPGFV 106 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~~i~~--g~~~~~~~l~~~---------~~~~~~~~v 106 (389)
+.+| ...|.+-+|+|--+ .|++ ++.| -.+++|++.. ... ..+..|.| ..-..+.++
T Consensus 174 vl~~-~~~V~~~~WnP~~~~llas----g~~~------s~ari~~l~e~~~~~-~~q~~lrh~~~~~~~s~~~nkdVT~L 241 (524)
T KOG0273|consen 174 VLRH-ESEVFICAWNPLRDGLLAS----GSGD------STARIWNLLENSNIG-STQLVLRHCIREGGKSVPSNKDVTSL 241 (524)
T ss_pred eccC-CCceEEEecCchhhhhhhc----cCCc------cceeeeeehhhcccc-chhhhhhhhhhhhcccCCccCCcceE
Confidence 4444 58899999999988 7777 5666 5667777753 111 01111111 012345679
Q ss_pred EEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 107 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 107 ~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
+++ -+|..||+|+.||.+|+|+. +|.++.+|+ ..+|.+++++ .|.+|+++ +-|+|+-|||..+|++-+.|+.
T Consensus 242 ~Wn-~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~---~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 242 DWN-NDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSG---GVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred Eec-CCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEec---cCCccEEEEeccCceEEEeeee
Confidence 998 79999999999999999995 899888886 4799999999 89999876 5679999999999999999999
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEE
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV 261 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l 261 (389)
|..+-..|.+. +++.+++.+-|+.|+++-+...++..++.||.+.|.++-|.|.|.+|+|+| |+|+|||... +.+.
T Consensus 317 ~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 317 HSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred ccCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 98887888884 478999999999999999999999999999999999999999999999999 9999999984 8999
Q ss_pred EEeccCcCCcCCCCeeEEEECCC---------CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcc
Q 016446 262 TSFEDHLLWHPDCNTNNIYITSD---------QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 332 (389)
Q Consensus 262 ~tl~gh~~~~~~~~v~sv~fSpd---------G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~ 332 (389)
..|.+|... |.++.+||+ |..||+++. |+|||+||+..|+|+++|..|+
T Consensus 395 ~~l~~Hske-----i~t~~wsp~g~v~~n~~~~~~l~sas~-----------dstV~lwdv~~gv~i~~f~kH~------ 452 (524)
T KOG0273|consen 395 HDLQAHSKE-----IYTIKWSPTGPVTSNPNMNLMLASASF-----------DSTVKLWDVESGVPIHTLMKHQ------ 452 (524)
T ss_pred hhhhhhccc-----eeeEeecCCCCccCCCcCCceEEEeec-----------CCeEEEEEccCCceeEeeccCC------
Confidence 999999865 789999996 557777765 4899999999999999999999
Q ss_pred cccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 333 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+|++|+|||||++||||+.||-|.+|+
T Consensus 453 ----------------------------~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 453 ----------------------------EPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ----------------------------CceEEEEecCCCcEEEecCCCCeeEecc
Confidence 6999999999999999999999999997
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.5e-34 Score=263.62 Aligned_cols=274 Identities=18% Similarity=0.255 Sum_probs=237.9
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
+..|..+.++ +++|++++.+|.+++|+..+++.+..+..+. ..+..+.|+|+++.|+++ +.| ..+++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~----~~~------~~i~i 77 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPVRDVAASADGTYLASG----SSD------KTIRL 77 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC-cceeEEEECCCCCEEEEE----cCC------CeEEE
Confidence 5789999999 6999999999999999999888888888875 788999999999999884 456 78999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLI 157 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~ 157 (389)
|++..++.. . .+. .+...+..+.|+ |+++++++++.|+.|++||+.+++++..+. ...|.+++|+| +.++++
T Consensus 78 ~~~~~~~~~--~-~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 78 WDLETGECV--R-TLT-GHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred EEcCcccce--E-EEe-ccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEE
Confidence 999876541 1 121 233356779998 789999999999999999999899888876 45799999996 666665
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
+ +.|+.|++||+.+++++..+..|...+..+.|+ |++..+++++.|+.|++||+.+++++..+..|...+.+++|+
T Consensus 153 ~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 153 S---SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred E---cCCCcEEEEEccccccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence 4 245899999999999999999888899999998 667789898889999999999999999999999999999999
Q ss_pred CCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 238 YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 238 pdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
|+++++++++ |+.|++||+. ++++..+.+|... |.+++|+|+|++|++++. |++|++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~-----------d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS-----VTSLAWSPDGKRLASGSA-----------DGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCc-----EEEEEECCCCCEEEEecC-----------CCeEEecC
Confidence 9999999999 9999999997 8999999988765 799999999999999876 48999996
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-35 Score=295.73 Aligned_cols=304 Identities=13% Similarity=0.143 Sum_probs=256.3
Q ss_pred cEEEEEecCceEEEEeccc--ceeeeeee--------c---CCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 14 DIVFALAHSGVCAAFSRET--NRRICFLN--------V---SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~t--g~~l~tl~--------~---~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
.++|+++.|-+.|+|++.. +.+...+- + ....-|.+++||-+|..||+ |..| ..++|
T Consensus 192 ~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat----G~~~------G~~ri 261 (524)
T KOG0273|consen 192 GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT----GSED------GEARI 261 (524)
T ss_pred hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE----eecC------cEEEE
Confidence 3899999999999999852 22221100 1 11246999999999999999 5678 88999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE--EEecCCcEEEEEEcCCceEEEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKISPGIMLLIF 158 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l--~tl~~~~V~~vafS~g~~la~~ 158 (389)
|+ ..|.+.. .| ..|.+.|.++.++ .+|.+|+|++-|+|+-|||..+|+.. ++|+...-.+|.+=....+|++
T Consensus 262 w~-~~G~l~~--tl--~~HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts 335 (524)
T KOG0273|consen 262 WN-KDGNLIS--TL--GQHKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATS 335 (524)
T ss_pred Ee-cCchhhh--hh--hccCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeec
Confidence 99 5666521 12 3577788899997 89999999999999999999999865 4555444356666667777765
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 238 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp 238 (389)
+.|+.|++..+..-...+||.||.+.|..+.|. |.+..|+++|.|+|+|||++..+.+.+-|.+|...|+.+.+||
T Consensus 336 ---~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 336 ---STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP 411 (524)
T ss_pred ---CCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence 556899999998888999999999999999998 6788888899999999999999999999999999999999999
Q ss_pred CC---------cEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 239 EN---------QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 239 dg---------~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
+| -.+|+++ |+|||+||+. |.++.+|..|+.+ |++|+|||||+|||||+.| |.
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p-----VysvafS~~g~ylAsGs~d-----------g~ 475 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP-----VYSVAFSPNGRYLASGSLD-----------GC 475 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc-----eEEEEecCCCcEEEecCCC-----------Ce
Confidence 64 4688888 9999999996 9999999999988 8999999999999999875 99
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 308 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 308 IklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
|.||++++|++.+.+++-. .|..|.|+.+|..|..+-.|+.|.+=
T Consensus 476 V~iws~~~~~l~~s~~~~~-----------------------------------~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKSYQGTG-----------------------------------GIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred eEeccccchheeEeecCCC-----------------------------------eEEEEEEcCCCCEEEEEecCCCceEE
Confidence 9999999999999998753 79999999999999999999998875
Q ss_pred c
Q 016446 388 S 388 (389)
Q Consensus 388 ~ 388 (389)
|
T Consensus 521 d 521 (524)
T KOG0273|consen 521 D 521 (524)
T ss_pred E
Confidence 4
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=281.88 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=244.7
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCe
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~ 114 (389)
++-.+.+| ...|+.+.|+|+|..+|| |+.| ++|.||.+ -|++.+.-.+ ..+.+.+-.|.|. +||.
T Consensus 39 p~m~l~gh-~geI~~~~F~P~gs~~aS----gG~D------r~I~LWnv-~gdceN~~~l--kgHsgAVM~l~~~-~d~s 103 (338)
T KOG0265|consen 39 PIMLLPGH-KGEIYTIKFHPDGSCFAS----GGSD------RAIVLWNV-YGDCENFWVL--KGHSGAVMELHGM-RDGS 103 (338)
T ss_pred hhhhcCCC-cceEEEEEECCCCCeEee----cCCc------ceEEEEec-cccccceeee--ccccceeEeeeec-cCCC
Confidence 34456665 589999999999999999 7899 99999995 4554322222 2466667779998 8999
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
.|.|+|.|++|+.||+++|++++.++ ..-|+++.-+ -|..|+.+ .+.|+|+||||+++-+++++++. .-.+.+|
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~S--gsdD~t~kl~D~R~k~~~~t~~~-kyqltAv 180 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCS--GSDDGTLKLWDIRKKEAIKTFEN-KYQLTAV 180 (338)
T ss_pred EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEe--cCCCceEEEEeecccchhhcccc-ceeEEEE
Confidence 99999999999999999999998876 4578999977 37777655 56789999999999999999952 2467899
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC----C-cEEEEec
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----G-ELVTSFE 265 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~----G-~~l~tl~ 265 (389)
.|. ..++...+|+-|+.||+||++.++++.++.||.+.|..+..+|+|.++.|-+ |.|+++||+. + .|++.++
T Consensus 181 ~f~-d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~ 259 (338)
T KOG0265|consen 181 GFK-DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ 259 (338)
T ss_pred Eec-ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee
Confidence 997 6688999999999999999999999999999999999999999999999999 9999999973 3 4799999
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
||...-. ......++||+++++..||.| +.+.+||..+-.++..|.||.
T Consensus 260 g~~hnfe-knlL~cswsp~~~~i~ags~d-----------r~vyvwd~~~r~~lyklpGh~------------------- 308 (338)
T KOG0265|consen 260 GHIHNFE-KNLLKCSWSPNGTKITAGSAD-----------RFVYVWDTTSRRILYKLPGHY------------------- 308 (338)
T ss_pred cchhhhh-hhcceeeccCCCCcccccccc-----------ceEEEeecccccEEEEcCCcc-------------------
Confidence 9886311 124678999999999998765 899999988779999999998
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
..|..++|+|.-.+|.|++.|++|-|
T Consensus 309 ---------------gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 309 ---------------GSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ---------------eeEEEeeecCCCcEEEEeccCceeEe
Confidence 48999999999999999999999865
No 24
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.2e-36 Score=288.82 Aligned_cols=296 Identities=15% Similarity=0.190 Sum_probs=252.8
Q ss_pred EecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeE
Q 016446 28 FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFV 106 (389)
Q Consensus 28 W~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v 106 (389)
|+.. .++-+.+++|. ++|+||++.|-++.+++ |+.| ++++|||+++|++ ..+ .++..-+..|
T Consensus 137 WHap-wKl~rVi~gHl-gWVr~vavdP~n~wf~t----gs~D------rtikIwDlatg~L-----kltltGhi~~vr~v 199 (460)
T KOG0285|consen 137 WHAP-WKLYRVISGHL-GWVRSVAVDPGNEWFAT----GSAD------RTIKIWDLATGQL-----KLTLTGHIETVRGV 199 (460)
T ss_pred ccCc-ceehhhhhhcc-ceEEEEeeCCCceeEEe----cCCC------ceeEEEEcccCeE-----EEeecchhheeeee
Confidence 6664 78888899986 99999999999999999 6678 9999999999997 222 2355556779
Q ss_pred EEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 107 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 107 ~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
+|| +--.||-|++.|++||-|||+..+.++..++ ..|.+++..| -..|+++ +.|.++|+||++|...+.+|.|
T Consensus 200 avS-~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~---grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 200 AVS-KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTG---GRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred eec-ccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEec---CCcceEEEeeecccceEEEecC
Confidence 998 7788999999999999999999888888876 4899999997 6677665 5568999999999999999999
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEE
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVT 262 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~ 262 (389)
|...|.+|.|. |.+.+++++|.|.||||||++.|+...++..|...|++++..|.-.+|||++-..||-|++- |+.++
T Consensus 276 H~~~V~~V~~~-~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~ 354 (460)
T KOG0285|consen 276 HTNPVASVMCQ-PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQ 354 (460)
T ss_pred CCCcceeEEee-cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhh
Confidence 99999999997 56778999999999999999999999999999999999999999999999995568999995 99999
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
.|.+|..- +++++...||-+ ++|+. .|+|-.||.++|-+-+.++. ...+|+-..
T Consensus 355 nlsgh~~i-----intl~~nsD~v~-~~G~d-----------ng~~~fwdwksg~nyQ~~~t---------~vqpGSl~s 408 (460)
T KOG0285|consen 355 NLSGHNAI-----INTLSVNSDGVL-VSGGD-----------NGSIMFWDWKSGHNYQRGQT---------IVQPGSLES 408 (460)
T ss_pred ccccccce-----eeeeeeccCceE-EEcCC-----------ceEEEEEecCcCcccccccc---------cccCCcccc
Confidence 99999875 799999998865 55543 49999999999877665532 122232110
Q ss_pred ccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
-..|++.+|+.-|..|+||..|++||+|.
T Consensus 409 -----------------EagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 409 -----------------EAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred -----------------ccceeEEeecccCceEEeccCCcceEEEe
Confidence 04899999999999999999999999995
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5e-35 Score=275.14 Aligned_cols=288 Identities=14% Similarity=0.170 Sum_probs=225.9
Q ss_pred eeeeeecCCcceEEEEEEeeC-CCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCC
Q 016446 35 RICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 113 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spd-g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG 113 (389)
.++++++|. +.++++||+|- |..||| ++.| +.+++|+...++.-.-.......+...+++|||+ |.|
T Consensus 6 ~~~~~~gh~-~r~W~~awhp~~g~ilAs----cg~D------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-p~g 73 (312)
T KOG0645|consen 6 LEQKLSGHK-DRVWSVAWHPGKGVILAS----CGTD------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-PHG 73 (312)
T ss_pred eEEeecCCC-CcEEEEEeccCCceEEEe----ecCC------ceEEEEecCCCCcEEEEEeccccchheeeeeeec-CCC
Confidence 456788875 89999999998 888888 6788 9999999765543111111112355668899998 999
Q ss_pred eEEEEecCCCeEEEEeCCCCe--EEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC---eEEEEEeecC
Q 016446 114 KVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG---TVLKVFYHLL 185 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~--~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG---~~l~tl~~~~ 185 (389)
++||+||.|.|+-||.-..++ |+.+|. .++|.+|+|| +|.+||++ +.|+.|=+|.+..+ +|+..|+.|+
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATC---SRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATC---SRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEe---eCCCeEEEEEecCCCcEEEEeeecccc
Confidence 999999999999999866555 788876 4689999999 79999987 55689999998744 4889999999
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECC---CCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEE
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVR---NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 261 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~---tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l 261 (389)
+-|+-|.|. |..+.|+++|+|.|||+|.-. .-+|.++|.+|...|++++|.|.|+.|+|++ |+||+||..-
T Consensus 151 qDVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~---- 225 (312)
T KOG0645|consen 151 QDVKHVIWH-PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY---- 225 (312)
T ss_pred ccccEEEEc-CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec----
Confidence 999999998 667888999999999999877 3469999999999999999999999999999 9999999853
Q ss_pred EEecc-CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC--eEEEEecCCCCCCCcccccCCC
Q 016446 262 TSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG--KCLAKINATNCSPKVDDELGSS 338 (389)
Q Consensus 262 ~tl~g-h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg--~~l~tl~gH~~~~~~~~~~~~~ 338 (389)
.++.+ |... +..|++- .-.|||++.| +.|+|+--..+ +....+-.
T Consensus 226 ~~~~~~~sr~-----~Y~v~W~--~~~IaS~ggD-----------~~i~lf~~s~~~d~p~~~l~~-------------- 273 (312)
T KOG0645|consen 226 TDLSGMHSRA-----LYDVPWD--NGVIASGGGD-----------DAIRLFKESDSPDEPSWNLLA-------------- 273 (312)
T ss_pred cCcchhcccc-----eEeeeec--ccceEeccCC-----------CEEEEEEecCCCCCchHHHHH--------------
Confidence 22322 3333 6788886 5678998764 89999974321 01111111
Q ss_pred CCCCccccccccceecccccccCCEEEEEECCC-CCEEEEecCCCcEEEccC
Q 016446 339 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpd-g~~LaSgs~D~tIrlW~~ 389 (389)
...+.|-..|++|.++|. +..|+||+.||+|++|.+
T Consensus 274 ---------------~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 274 ---------------KKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ---------------hhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 112223368999999995 789999999999999964
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.7e-35 Score=275.53 Aligned_cols=276 Identities=11% Similarity=0.177 Sum_probs=237.0
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
.||+++-++ ...|+++|.||.+-+||.-|.+..+.++-. +.+|++.||+|-|+.+|. |+-| ....|+
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-s~WVMtCA~sPSg~~VAc----GGLd------N~Csiy 124 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-SSWVMTCAYSPSGNFVAC----GGLD------NKCSIY 124 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-ceeEEEEEECCCCCeEEe----cCcC------ceeEEE
Confidence 689999999 889999999999999999999888888876 589999999999999999 7788 777788
Q ss_pred EeccCCCCCcceeEe--eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcC--CceE
Q 016446 82 YIRRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIML 155 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~--~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~--g~~l 155 (389)
++...+-....+.-. ..|.+++....|- +|++ |+++|.|.|.-|||+++|+.+..+++ ..|.+++++| ++++
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~-dD~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFL-DDNH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEc-CCCc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 876442211111110 2355666678996 6665 55688999999999999999988875 5799999996 7777
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC--CCceEE
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE--FMTPSA 233 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh--~~~v~s 233 (389)
+++ +-|++.||||++.|.|.++|++|..-|++|.|. |+|..+++||+|+|+||+|++..+.+.++... ...|++
T Consensus 203 vSg---~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 203 VSG---GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITS 278 (343)
T ss_pred Eec---ccccceeeeeccCcceeEeecccccccceEEEc-cCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCcee
Confidence 765 567999999999999999999999999999998 78999999999999999999998888877643 458999
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEeC-CCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 234 FIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 234 v~fspdg~~laS~s-D~tIklWd~-~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
|+||--|++|..|. |.++.+||. .|+.+-.|.||.+. |..+..||||.-+++||.| .++|||
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR-----vScl~~s~DG~av~TgSWD-----------s~lriW 342 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR-----VSCLGVSPDGMAVATGSWD-----------STLRIW 342 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCe-----eEEEEECCCCcEEEecchh-----------Hheeec
Confidence 99999999999998 999999998 59999999999998 8999999999999999876 799999
Q ss_pred e
Q 016446 312 S 312 (389)
Q Consensus 312 d 312 (389)
.
T Consensus 343 ~ 343 (343)
T KOG0286|consen 343 A 343 (343)
T ss_pred C
Confidence 4
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.9e-37 Score=299.32 Aligned_cols=273 Identities=16% Similarity=0.258 Sum_probs=224.0
Q ss_pred eeeeeecC--CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC
Q 016446 35 RICFLNVS--PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 112 (389)
Q Consensus 35 ~l~tl~~~--~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd 112 (389)
.+.++|-. ....|+++-| |.+.++| |..| ++|+|||...-.+ ...|. +|.|.+..+.|.
T Consensus 186 ~~~rinc~Se~skgVYClQY--DD~kiVS----GlrD------nTikiWD~n~~~c--~~~L~--GHtGSVLCLqyd--- 246 (499)
T KOG0281|consen 186 LLQRINCRSENSKGVYCLQY--DDEKIVS----GLRD------NTIKIWDKNSLEC--LKILT--GHTGSVLCLQYD--- 246 (499)
T ss_pred eeeeecCCcccCCceEEEEe--cchhhhc----cccc------CceEEeccccHHH--HHhhh--cCCCcEEeeecc---
Confidence 34445443 2346888877 6687888 6677 9999999876655 22243 355666667774
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCe---EEEEEeecCCc
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT---VLKVFYHLLHR 187 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~---~l~tl~~~~~~ 187 (389)
.+.|+|||.|.||++||+++|+++.++- .+.|..+.|+.|-++ ++ +.|.+|++||+..-. |.+.|.||...
T Consensus 247 ~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mv-tc---SkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMV-TC---SKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEE-Ee---cCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 6799999999999999999999998873 579999999988776 44 567999999987543 44678899999
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEec
Q 016446 188 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 265 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~ 265 (389)
|+.|.|. +.+|+++|.|.|||+|+..|+++++++.||.-.|-+ .-+.|++++||| |.||||||++ |.|++.|+
T Consensus 323 VNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAC--lQYr~rlvVSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 323 VNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred eeeeccc---cceEEEecCCceEEEEeccceeeehhhhccccccee--hhccCeEEEecCCCceEEEEeccccHHHHHHh
Confidence 9999986 579999999999999999999999999999977643 367899999998 9999999998 99999999
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe---------EEEEecCCCCCCCcccccC
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---------CLAKINATNCSPKVDDELG 336 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~---------~l~tl~gH~~~~~~~~~~~ 336 (389)
||... |..|.| |.+.|+||.- ||+||+||+.++. |+.++-.|+
T Consensus 398 GHEeL-----vRciRF--d~krIVSGaY-----------DGkikvWdl~aaldpra~~~~~Cl~~lv~hs---------- 449 (499)
T KOG0281|consen 398 GHEEL-----VRCIRF--DNKRIVSGAY-----------DGKIKVWDLQAALDPRAPASTLCLRTLVEHS---------- 449 (499)
T ss_pred chHHh-----hhheee--cCceeeeccc-----------cceEEEEecccccCCcccccchHHHhhhhcc----------
Confidence 99987 789999 8899999866 5999999998765 555555555
Q ss_pred CCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 337 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|..+-|. ...|+|.+.|-||-+||.
T Consensus 450 ------------------------gRVFrLQFD--~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 450 ------------------------GRVFRLQFD--EFQIISSSHDDTILIWDF 476 (499)
T ss_pred ------------------------ceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence 699999995 567999999999999984
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=267.57 Aligned_cols=261 Identities=10% Similarity=0.127 Sum_probs=217.5
Q ss_pred EEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe--E
Q 016446 58 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--M 135 (389)
Q Consensus 58 ~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~ 135 (389)
.|+| .++| ++||+|...+|++..+ +. -.-+++-.++.. ||++.||.|+ ...|||+|+.+++ +
T Consensus 12 iLvs----A~YD------hTIRfWqa~tG~C~rT--iq--h~dsqVNrLeiT-pdk~~LAaa~-~qhvRlyD~~S~np~P 75 (311)
T KOG0315|consen 12 ILVS----AGYD------HTIRFWQALTGICSRT--IQ--HPDSQVNRLEIT-PDKKDLAAAG-NQHVRLYDLNSNNPNP 75 (311)
T ss_pred EEEe----ccCc------ceeeeeehhcCeEEEE--Ee--cCccceeeEEEc-CCcchhhhcc-CCeeEEEEccCCCCCc
Confidence 5566 5699 9999999999999322 11 122345668997 9999999776 5789999999887 5
Q ss_pred EEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEE
Q 016446 136 LYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 212 (389)
Q Consensus 136 l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIkl 212 (389)
+.++. ...|.+|.|. +|.+++++ ++|+|+||||++.-+|-+.|+ |..+|++|... |...-|+++-.+|.|++
T Consensus 76 v~t~e~h~kNVtaVgF~~dgrWMyTg---seDgt~kIWdlR~~~~qR~~~-~~spVn~vvlh-pnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQCDGRWMYTG---SEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLH-PNQTELISGDQSGNIRV 150 (311)
T ss_pred eeEEeccCCceEEEEEeecCeEEEec---CCCceEEEEeccCcccchhcc-CCCCcceEEec-CCcceEEeecCCCcEEE
Confidence 66664 5789999999 99999875 677999999999988888887 45899999987 55567778889999999
Q ss_pred EECCCCeEEEEccc-CCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc------EEEEeccCcCCcCCCCeeEEEECC
Q 016446 213 LDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE------LVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 213 Wd~~tg~~~~~l~g-h~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~------~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
||+....|.+.|.. -.-.|.+++.-|||.+|+.+. -|+.-+|++- ++ .+..|+.|... +....|||
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~-----il~C~lSP 225 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH-----ILRCLLSP 225 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce-----EEEEEECC
Confidence 99999988776543 345899999999999999998 8999999984 32 35567778765 78999999
Q ss_pred CCCEEEEEecCCCcccccCCCCCeEEEEeCCCC-eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCC
Q 016446 284 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 362 (389)
Q Consensus 284 dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg-~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
|+++||++|.| +|+|||++.+= +.-..|.||+ .+
T Consensus 226 d~k~lat~ssd-----------ktv~iwn~~~~~kle~~l~gh~----------------------------------rW 260 (311)
T KOG0315|consen 226 DVKYLATCSSD-----------KTVKIWNTDDFFKLELVLTGHQ----------------------------------RW 260 (311)
T ss_pred CCcEEEeecCC-----------ceEEEEecCCceeeEEEeecCC----------------------------------ce
Confidence 99999998765 89999998876 6677899999 69
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 363 ITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 363 V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
||.++||.||++|++||.|+++|||+.
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeeccc
Confidence 999999999999999999999999984
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.3e-35 Score=302.11 Aligned_cols=276 Identities=14% Similarity=0.156 Sum_probs=227.8
Q ss_pred cEEEEEeec---cEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 5 KVIEIVAAR---DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 5 ~v~~i~~~~---~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
.|.+.-|-| +.+|+++.++.+|+++..+-.|- -+.|| .+.|.|+.....|..||| ++.| ..++||
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH-~e~vlSL~~~~~g~llat----~sKD------~svilW 392 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGH-TEAVLSLDVWSSGDLLAT----GSKD------KSVILW 392 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCc-hhheeeeeecccCcEEEE----ecCC------ceEEEE
Confidence 466777776 99999999999999998754544 56665 699999998888999999 5577 899999
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-----EEEE------ecCCcEEEEEEc
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----MLYS------ISDKHVQEIKIS 150 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-----~l~t------l~~~~V~~vafS 150 (389)
-+..+............|.+.+..|+++.---..++|+|+|.|+|+|++...+ ..++ .|+..|++|+++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 88333221010011134556678899973333689999999999999986522 1121 145689999999
Q ss_pred CCc-eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC
Q 016446 151 PGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM 229 (389)
Q Consensus 151 ~g~-~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~ 229 (389)
|+. .+|+ +|.|+|.|||+++.++++.+|.||...+++|.|+ |-++.+|++|.|+|||||.+++.+|+++|.||..
T Consensus 473 ~ndkLiAT---~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs-~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~ 548 (775)
T KOG0319|consen 473 PNDKLIAT---GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFS-KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS 548 (775)
T ss_pred CCCceEEe---cccccceeeecccCceEEEEeeCCccceEEEEec-cccceeEeccCCceEEEEEeccceeeeeecCccc
Confidence 755 5554 4788999999999999999999999999999998 5567888889999999999999999999999999
Q ss_pred ceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 230 TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 230 ~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
.|-.+.|-.+|+.|+|+. ||-||||++. ++|+++|.+|.+. ||+++-+|++.++++|+. ||.
T Consensus 549 aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr-----vWaL~~~~~~~~~~tgg~-----------Dg~ 612 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR-----VWALSVSPLLDMFVTGGG-----------DGR 612 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce-----eEEEeecCccceeEecCC-----------CeE
Confidence 999999999999999997 9999999996 9999999999987 899999999999999876 499
Q ss_pred EEEEe
Q 016446 308 INVSS 312 (389)
Q Consensus 308 IklWd 312 (389)
|.+|.
T Consensus 613 i~~wk 617 (775)
T KOG0319|consen 613 IIFWK 617 (775)
T ss_pred EEEee
Confidence 99995
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.8e-36 Score=291.28 Aligned_cols=268 Identities=12% Similarity=0.190 Sum_probs=223.3
Q ss_pred ccEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 4 TKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 4 ~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
-.|+++..-.+.++++++|.|||+||..+-+|++.|.||. ..|-++-| |...||| |+-| -++++||+
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHt-GSVLCLqy--d~rviis----GSSD------sTvrvWDv 264 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHT-GSVLCLQY--DERVIVS----GSSD------STVRVWDV 264 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCC-CcEEeeec--cceEEEe----cCCC------ceEEEEec
Confidence 3689999999999999999999999998889999999985 89999988 5578888 6677 89999999
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe---EEEEe--cCCcEEEEEEcCCceEEEE
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSI--SDKHVQEIKISPGIMLLIF 158 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~---~l~tl--~~~~V~~vafS~g~~la~~ 158 (389)
.+|++.+ .+|. |...+..+.|+ +| +++++|.|.+|++||+.... +.+.| |...|+.|.|++- +++++
T Consensus 265 ~tge~l~--tlih--HceaVLhlrf~--ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsA 336 (499)
T KOG0281|consen 265 NTGEPLN--TLIH--HCEAVLHLRFS--NG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSA 336 (499)
T ss_pred cCCchhh--HHhh--hcceeEEEEEe--CC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEe
Confidence 9999843 3553 33345668997 56 88999999999999997655 22333 4468999999854 66665
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 238 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp 238 (389)
+.|.|||+|++.|++++++|.+|...+..+++. +..+++||.|.||||||++.|.|++.|+||..-|+.|.|.
T Consensus 337 ---SgDRTikvW~~st~efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd- 409 (499)
T KOG0281|consen 337 ---SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD- 409 (499)
T ss_pred ---cCCceEEEEeccceeeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec-
Confidence 567999999999999999999877666666653 6677778999999999999999999999999999999994
Q ss_pred CCcEEEEEc-CCeEEEEeCC-Cc---------EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 239 ENQLFLTFR-NRTVAVWNFR-GE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 239 dg~~laS~s-D~tIklWd~~-G~---------~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
.+.++||. ||+||+||++ +. |+.++..|.+. |..+.| |...|+|.+.| .|
T Consensus 410 -~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgR-----VFrLQF--D~fqIvsssHd-----------dt 470 (499)
T KOG0281|consen 410 -NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGR-----VFRLQF--DEFQIISSSHD-----------DT 470 (499)
T ss_pred -CceeeeccccceEEEEecccccCCcccccchHHHhhhhccce-----eEEEee--cceEEEeccCC-----------Ce
Confidence 56799998 9999999986 43 78889999887 799999 78888887654 79
Q ss_pred EEEEeCCCCeE
Q 016446 308 INVSSILTGKC 318 (389)
Q Consensus 308 IklWd~~tg~~ 318 (389)
|-|||...|-.
T Consensus 471 ILiWdFl~~~~ 481 (499)
T KOG0281|consen 471 ILIWDFLNGPP 481 (499)
T ss_pred EEEEEcCCCCc
Confidence 99999987643
No 31
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=303.22 Aligned_cols=273 Identities=17% Similarity=0.254 Sum_probs=229.9
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEE
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 118 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las 118 (389)
+.+++...+.+..|. +..+++ +.++ ..+++|+..+|+..... + .+|.+.++.++|. .-+.+|.+
T Consensus 203 ~~~~~~~~~~~~q~~--~~~~~~----~s~~------~tl~~~~~~~~~~i~~~-l--~GH~g~V~~l~~~-~~~~~lvs 266 (537)
T KOG0274|consen 203 LLGTDDHVVLCLQLH--DGFFKS----GSDD------STLHLWDLNNGYLILTR-L--VGHFGGVWGLAFP-SGGDKLVS 266 (537)
T ss_pred ecccCcchhhhheee--cCeEEe----cCCC------ceeEEeecccceEEEee-c--cCCCCCceeEEEe-cCCCEEEE
Confidence 333555678888887 355677 5677 77788999888862111 1 2577778899995 35789999
Q ss_pred ecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec
Q 016446 119 SAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 196 (389)
Q Consensus 119 ~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~ 196 (389)
||.|+|+|+||..+|+|..++.+ ..|.++.+-+.. +.+ ++.|.|||+|++++|++++++.+|...|++|...
T Consensus 267 gS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~-~~s---gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 267 GSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFL-LVS---GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-- 340 (537)
T ss_pred EecCCcEEeEecCCCcEEEEecCCCceEEEEEccCce-Eee---ccCCceEEEEeccCcceEEEeccccccEEEEEec--
Confidence 99999999999999999999974 567777765443 323 5778999999999999999999999999999986
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C-cEEEEeccCcCCcCC
Q 016446 197 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPD 273 (389)
Q Consensus 197 ~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G-~~l~tl~gh~~~~~~ 273 (389)
+..+++|+.|++|++||+.+++|+++|.||..+|+++.|.+. ..+.+|+ |++||+||++ + +|+.+|.+|...
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--- 415 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--- 415 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc---
Confidence 789999999999999999999999999999999999988777 8899999 9999999997 6 799999999876
Q ss_pred CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC-CCCCCCcccccCCCCCCCccccccccce
Q 016446 274 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYI 352 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
|..+. ..+++|+|++.| ++||+||+++|+|++++.+ |.
T Consensus 416 --v~~l~--~~~~~Lvs~~aD-----------~~Ik~WD~~~~~~~~~~~~~~~-------------------------- 454 (537)
T KOG0274|consen 416 --VSSLL--LRDNFLVSSSAD-----------GTIKLWDAEEGECLRTLEGRHV-------------------------- 454 (537)
T ss_pred --ccccc--cccceeEecccc-----------ccEEEeecccCceeeeeccCCc--------------------------
Confidence 55554 489999998875 8999999999999999999 54
Q ss_pred ecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 353 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 353 ~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|+++++. -..+++++.|+++++||.
T Consensus 455 --------~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 455 --------GGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred --------ccEEEeecC--cceEEEEecCCeeEEEec
Confidence 488888887 568999999999999984
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-33 Score=307.75 Aligned_cols=274 Identities=11% Similarity=0.114 Sum_probs=223.8
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEeccc----ce----eeeeeecCCcceEEEEEEeeC-CCEEEEEEEeecCCCc
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRET----NR----RICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFS 71 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~t----g~----~l~tl~~~~~~~v~sv~~spd-g~~l~s~s~~~~~d~~ 71 (389)
.+.|..|.|+ +++||+++.|++|+||+..+ +. ++..+.+ + ..|.+++|+|. +..||+ ++.|
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~-~~v~~l~~~~~~~~~las----~~~D-- 554 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R-SKLSGICWNSYIKSQVAS----SNFE-- 554 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c-CceeeEEeccCCCCEEEE----EeCC--
Confidence 3568899998 89999999999999999743 21 2334443 2 67999999985 778888 4577
Q ss_pred ceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc
Q 016446 72 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS 150 (389)
Q Consensus 72 ~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS 150 (389)
..++|||+.+++.. ..+ ..+...+.+++|++++|.+|++|+.|++||+||+.+++++.++. ...|.+++|+
T Consensus 555 ----g~v~lWd~~~~~~~---~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~ 626 (793)
T PLN00181 555 ----GVVQVWDVARSQLV---TEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFP 626 (793)
T ss_pred ----CeEEEEECCCCeEE---EEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEe
Confidence 89999999887651 111 24556678999985689999999999999999999999988886 4589999996
Q ss_pred -C-CceEEEEecCCCCeeEEEEEcCCCe-EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC------CeEE
Q 016446 151 -P-GIMLLIFNRSSSHVPLKILSIEDGT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN------AELM 221 (389)
Q Consensus 151 -~-g~~la~~~~~s~d~tiklWd~~tG~-~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t------g~~~ 221 (389)
+ |.+||++ +.|++|++||+.+++ .+.++.+|...+..|.|. ++..+++++.|++|||||+.. +.++
T Consensus 627 ~~~g~~latg---s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l 701 (793)
T PLN00181 627 SESGRSLAFG---SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPL 701 (793)
T ss_pred CCCCCEEEEE---eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence 3 8888876 456899999998876 578888999999999995 578999999999999999974 3678
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe-------------ccCcCCcCCCCeeEEEECCCCC
Q 016446 222 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF-------------EDHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 222 ~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl-------------~gh~~~~~~~~v~sv~fSpdG~ 286 (389)
.++.+|...+..++|+|++++||+++ |++|++|+.. +..+.++ ..|.. .|.+++|+|+|+
T Consensus 702 ~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-----~V~~v~ws~~~~ 776 (793)
T PLN00181 702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ-----FISSVCWRGQSS 776 (793)
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc-----EEEEEEEcCCCC
Confidence 89999999999999999999999999 9999999985 5433222 12222 289999999999
Q ss_pred EEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 287 LIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 287 ~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
+|++|+. ||+||||++
T Consensus 777 ~lva~~~-----------dG~I~i~~~ 792 (793)
T PLN00181 777 TLVAANS-----------TGNIKILEM 792 (793)
T ss_pred eEEEecC-----------CCcEEEEec
Confidence 9999876 499999985
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=289.56 Aligned_cols=274 Identities=16% Similarity=0.136 Sum_probs=226.3
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
-.|+.|.|.|+|..|++++. - ....||.... +++...+ ++|-..|..+.+| +||..++||+.||.
T Consensus 97 c~V~~v~WtPeGRRLltgs~----S------GEFtLWNg~~--fnFEtil--QaHDs~Vr~m~ws-~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQ----S------GEFTLWNGTS--FNFETIL--QAHDSPVRTMKWS-HNGTWMISGDKGGM 161 (464)
T ss_pred cceeeEEEcCCCceeEeecc----c------ccEEEecCce--eeHHHHh--hhhcccceeEEEc-cCCCEEEEcCCCce
Confidence 58999999999999999653 3 4556676311 1111112 2233446789998 89999999999999
Q ss_pred EEEEeCCCCeEEEEe---cCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCe
Q 016446 125 YKVFDLKNYTMLYSI---SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 200 (389)
Q Consensus 125 iklWdl~~g~~l~tl---~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~ 200 (389)
||+|+.+ -+.+..+ +.+.|+++|||| +..++++ ++|++|||||..-.+....|.+|.--+++|++. |.-+.
T Consensus 162 iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~---SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P~kgL 236 (464)
T KOG0284|consen 162 IKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTC---SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-PTKGL 236 (464)
T ss_pred EEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEe---cCCCeEEEEeccCCchhheeccCCCCcceeccC-Cccce
Confidence 9999974 3333333 347899999995 7777765 667999999999999999999998899999999 66788
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeE
Q 016446 201 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 278 (389)
Q Consensus 201 l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~s 278 (389)
++++|.|.+|||||.++|+|+.++.+|...|.++.|+|++.+|+|+| |.++|+.|++ =+.+.++++|... |++
T Consensus 237 iasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-----v~~ 311 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-----VTS 311 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-----hee
Confidence 88999999999999999999999999999999999999999999999 9999999998 7788999999876 799
Q ss_pred EEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe-cCCCCCCCcccccCCCCCCCccccccccceeccc
Q 016446 279 IYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 356 (389)
Q Consensus 279 v~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (389)
++++|=- .++++|+ .||.|..|.+-..+.+..+ .+|.
T Consensus 312 ~~WhP~~~~lftsgg-----------~Dgsvvh~~v~~~~p~~~i~~AHd------------------------------ 350 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGG-----------SDGSVVHWVVGLEEPLGEIPPAHD------------------------------ 350 (464)
T ss_pred eccccccccceeecc-----------CCCceEEEeccccccccCCCcccc------------------------------
Confidence 9999954 5556654 4699999998755555554 3454
Q ss_pred ccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 357 GEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 357 ~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..||+++|+|=|++|+|||.|+++|+|.
T Consensus 351 ----~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 351 ----GEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ----cceeeeeccccceeEeecCCCcceeeec
Confidence 6899999999999999999999999995
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-34 Score=278.21 Aligned_cols=235 Identities=17% Similarity=0.283 Sum_probs=216.9
Q ss_pred eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcC
Q 016446 97 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 97 ~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~ 173 (389)
..|++|+.+|+|. |-.+.+++||.|+||||||+++|++..++.+ ..|+.|+||+ --+|.++ +.|+.||-||++
T Consensus 148 ~gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~---gedk~VKCwDLe 223 (460)
T KOG0285|consen 148 SGHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSA---GEDKQVKCWDLE 223 (460)
T ss_pred hhccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEe---cCCCeeEEEech
Confidence 4589999999997 8889999999999999999999999999985 5899999995 5566554 677999999999
Q ss_pred CCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 174 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 174 tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
..+.++.+-||...|+.++.. |.-+.|++++.|.++|+||+++...+.+|.||...|.+|.|.|-.-.++|+| |+|||
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 999999999999999999998 6678999999999999999999999999999999999999999777788999 99999
Q ss_pred EEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCc
Q 016446 253 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 331 (389)
Q Consensus 253 lWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~ 331 (389)
|||+. |+-..+|..|.-. |++++..|.-...||+|.| .||-|++..|+.++.|.||+
T Consensus 303 lWDl~agkt~~tlt~hkks-----vral~lhP~e~~fASas~d------------nik~w~~p~g~f~~nlsgh~----- 360 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKS-----VRALCLHPKENLFASASPD------------NIKQWKLPEGEFLQNLSGHN----- 360 (460)
T ss_pred EeeeccCceeEeeecccce-----eeEEecCCchhhhhccCCc------------cceeccCCccchhhcccccc-----
Confidence 99997 9999999988765 8999999999999999886 79999999999999999998
Q ss_pred ccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 332 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.-|.+++...|| .+++|++.|.+.+||
T Consensus 361 -----------------------------~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 361 -----------------------------AIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred -----------------------------ceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 589999999998 588999999999998
No 35
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=293.99 Aligned_cols=270 Identities=15% Similarity=0.212 Sum_probs=227.9
Q ss_pred eeccEEEEEecCceEEEEecccceeeee-eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC
Q 016446 11 AARDIVFALAHSGVCAAFSRETNRRICF-LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 89 (389)
Q Consensus 11 ~~~~~~a~~~~~gtiklW~~~tg~~l~t-l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~ 89 (389)
+-...+++++.++++++|+..+|+++.+ +.||. +.|++++|..-+..|++ |+.| .++++||+.+|++.
T Consensus 216 ~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~-g~V~~l~~~~~~~~lvs----gS~D------~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 216 LHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF-GGVWGLAFPSGGDKLVS----GSTD------KTERVWDCSTGECT 284 (537)
T ss_pred eecCeEEecCCCceeEEeecccceEEEeeccCCC-CCceeEEEecCCCEEEE----EecC------CcEEeEecCCCcEE
Confidence 3378899999999999999999999999 99974 99999999887889999 5678 99999999999982
Q ss_pred CcceeEeeecccCceeE-EEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcCCceEEEEecCCCCee
Q 016446 90 SGFALFESESLKWPGFV-EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVP 166 (389)
Q Consensus 90 ~~~~l~~~~~~~~~~~v-~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~t 166 (389)
..+. +|...+ .++ -.+..+++||.|.|||+|++.+++++.++. ...|++|.+. +.++++++ .|++
T Consensus 285 --~~l~-----gh~stv~~~~-~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs---~d~~ 352 (537)
T KOG0274|consen 285 --HSLQ-----GHTSSVRCLT-IDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGS---YDGT 352 (537)
T ss_pred --EEec-----CCCceEEEEE-ccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEe---cCce
Confidence 2232 343343 232 456789999999999999999999998886 4789999999 66776664 4579
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCC-CeEEEEeCCCcEEEEECCCC-eEEEEcccCCCceEEEEEcCCCcEEE
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~-~~l~~~s~D~tIklWd~~tg-~~~~~l~gh~~~v~sv~fspdg~~la 244 (389)
|++||+.+++|+++|++|.+.|.++.+. + ..+++|+.|++||+||+.++ +|+.+|.+|..-|..+ ...++.|+
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~---~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lv 427 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVD---SENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLV 427 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEec---CcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeE
Confidence 9999999999999999999999999775 4 88999999999999999999 9999999999988655 55788899
Q ss_pred EEc-CCeEEEEeCC-CcEEEEecc-CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 245 TFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 245 S~s-D~tIklWd~~-G~~l~tl~g-h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
|++ |++||+||.+ |+|++++++ |... |..+++. -..+++++. |++++|||+.+|+++++
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~-----v~~l~~~--~~~il~s~~-----------~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRTLEGRHVGG-----VSALALG--KEEILCSSD-----------DGSVKLWDLRSGTLIRT 489 (537)
T ss_pred eccccccEEEeecccCceeeeeccCCccc-----EEEeecC--cceEEEEec-----------CCeeEEEecccCchhhh
Confidence 999 9999999996 999999999 4443 6788776 355555544 59999999999999998
Q ss_pred ecCCC
Q 016446 322 INATN 326 (389)
Q Consensus 322 l~gH~ 326 (389)
+-.++
T Consensus 490 l~~~~ 494 (537)
T KOG0274|consen 490 LLSTD 494 (537)
T ss_pred hhhcc
Confidence 85554
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-34 Score=289.93 Aligned_cols=233 Identities=16% Similarity=0.226 Sum_probs=212.4
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
-+.+|.|. |....+..+-..|+|.|||.++..++.+++ ..+|++.+|= --++++++ ++|+.||+++..|++.+
T Consensus 15 RVKsVd~H-PtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~G---sDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 15 RVKSVDFH-PTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTG---SDDMQIRVFNYNTGEKV 90 (794)
T ss_pred ceeeeecC-CCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEe---cCCceEEEEecccceee
Confidence 35689997 888888888999999999999999999997 5689999999 57788776 56799999999999999
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEEcccCCCceEEEEEcC-CCcEEEEEc-CCeEEEEe
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg-~~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd 255 (389)
++|+-|.+-+++++.+ |..-+++++|.|-+||+||.+.+ .|.++++||...|..|+|+| |...+||++ |+|||+|.
T Consensus 91 ~~FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred EEeeccccceeeeeec-CCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence 9999999999999998 56779999999999999999864 68999999999999999998 788999999 99999999
Q ss_pred CC-CcEEEEeccCcCCcCCCCeeEEEECCCC--CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcc
Q 016446 256 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 332 (389)
Q Consensus 256 ~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG--~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~ 332 (389)
+. ..+..||+||... |++|.|=|-| -||+||+.| .+|||||.+|.+|++||.||+
T Consensus 170 lgs~~~nfTl~gHekG-----VN~Vdyy~~gdkpylIsgaDD-----------~tiKvWDyQtk~CV~TLeGHt------ 227 (794)
T KOG0276|consen 170 LGSPHPNFTLEGHEKG-----VNCVDYYTGGDKPYLISGADD-----------LTIKVWDYQTKSCVQTLEGHT------ 227 (794)
T ss_pred cCCCCCceeeeccccC-----cceEEeccCCCcceEEecCCC-----------ceEEEeecchHHHHHHhhccc------
Confidence 95 8899999999976 7999997744 699998765 899999999999999999999
Q ss_pred cccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 333 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+-|..+.|+|.=.+++|||+|||||||.+
T Consensus 228 ----------------------------~Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 228 ----------------------------NNVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred ----------------------------ccceEEEecCCCcEEEEecCCccEEEecC
Confidence 58999999999999999999999999974
No 37
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.7e-32 Score=271.47 Aligned_cols=308 Identities=11% Similarity=0.077 Sum_probs=245.0
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
--.+|++++|++|.+++=--=+.-.++.-| ...|++|.|||||...|+++ .| +.+.|+|=.+|+.. .
T Consensus 160 PfRi~T~sdDn~v~ffeGPPFKFk~s~r~H-skFV~~VRysPDG~~Fat~g----sD------gki~iyDGktge~v--g 226 (603)
T KOG0318|consen 160 PFRIATGSDDNTVAFFEGPPFKFKSSFREH-SKFVNCVRYSPDGSRFATAG----SD------GKIYIYDGKTGEKV--G 226 (603)
T ss_pred ceEEEeccCCCeEEEeeCCCeeeeeccccc-ccceeeEEECCCCCeEEEec----CC------ccEEEEcCCCccEE--E
Confidence 457999999999999973323555567766 48999999999999999964 44 78889988888752 1
Q ss_pred eeE-eeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEE----EEEEcCCceEEEEecCCCCee
Q 016446 93 ALF-ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQ----EIKISPGIMLLIFNRSSSHVP 166 (389)
Q Consensus 93 ~l~-~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~----~vafS~g~~la~~~~~s~d~t 166 (389)
.+- ...|.|.|+++++| ||++.++++|.|+++||||+.+.+++.++. +..|. .+-+ +++.|++-+.+ ++
T Consensus 227 ~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW-qkd~lItVSl~---G~ 301 (603)
T KOG0318|consen 227 ELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW-QKDHLITVSLS---GT 301 (603)
T ss_pred EecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE-eCCeEEEEEcC---cE
Confidence 111 12477889999998 999999999999999999999999999986 33222 2222 35556555333 79
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccC------------------
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTE------------------ 227 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh------------------ 227 (389)
|-+.+...+..++++.||...+.++..+ +++.+|.++++||.|.=||..+|.+-+.. ++|
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~-~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVS-PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI 380 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEc-CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence 9999999999999999999999999998 78899999999999999999887532111 111
Q ss_pred --------------------------------------------------------------CCceEEEEEcCCCcEEEE
Q 016446 228 --------------------------------------------------------------FMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 228 --------------------------------------------------------------~~~v~sv~fspdg~~laS 245 (389)
.-.+.++|++|+++.+|-
T Consensus 381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence 012567888999999999
Q ss_pred Ec-CCeEEEEeCCC-cEE--EEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 246 FR-NRTVAVWNFRG-ELV--TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 246 ~s-D~tIklWd~~G-~~l--~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
|. |+.|.|+.+.| ++. ..+..|..+ |..|+|||||+|||++-.. +.|-+||+++.+....
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~~~~h~a~-----iT~vaySpd~~yla~~Da~-----------rkvv~yd~~s~~~~~~ 524 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAKLLEHRAA-----ITDVAYSPDGAYLAAGDAS-----------RKVVLYDVASREVKTN 524 (603)
T ss_pred ecccceEEEEEecCCcccceeeeecccCC-----ceEEEECCCCcEEEEeccC-----------CcEEEEEcccCceecc
Confidence 99 99999999985 432 345678877 7999999999999997543 7899999998887333
Q ss_pred ecC-CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 322 INA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 322 l~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
--+ |+ ..|.+|++|||.+++||||-|-.|-+|..
T Consensus 525 ~w~FHt----------------------------------akI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 525 RWAFHT----------------------------------AKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred eeeeee----------------------------------eeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 333 55 69999999999999999999999999973
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-33 Score=283.11 Aligned_cols=280 Identities=14% Similarity=0.160 Sum_probs=233.2
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEE
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 117 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~La 117 (389)
++..+ ++.|.||-|.|--..++.+ -+. .++-||+..+..... -|. -.-..+++..|- +--+.++
T Consensus 8 k~~~r-SdRVKsVd~HPtePw~la~----Lyn------G~V~IWnyetqtmVk---sfe-V~~~PvRa~kfi-aRknWiv 71 (794)
T KOG0276|consen 8 KFQSR-SDRVKSVDFHPTEPWILAA----LYN------GDVQIWNYETQTMVK---SFE-VSEVPVRAAKFI-ARKNWIV 71 (794)
T ss_pred Hhhcc-CCceeeeecCCCCceEEEe----eec------CeeEEEecccceeee---eee-ecccchhhheee-eccceEE
Confidence 34444 6999999999998877663 355 677889877665421 222 111234667886 6677999
Q ss_pred EecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCC-CeEEEEEeecCCceeEEEE
Q 016446 118 YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVDF 193 (389)
Q Consensus 118 s~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~t-G~~l~tl~~~~~~~~~v~f 193 (389)
+||+|..||+++.+|++.+.+++ .+.|++|+.+| .-+++++ |+|++||+||.+. -.|.++|+||.|-|..|+|
T Consensus 72 ~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLts---SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTS---SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred EecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEec---CCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 99999999999999999998886 46899999998 4455553 6689999999875 4688999999999999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC--CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcC
Q 016446 194 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL 269 (389)
Q Consensus 194 ~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp--dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~ 269 (389)
+|-|+.+++++|-|+|||+|.+.+-.|..||+||...|++|.|-| |..+|+||+ |.|||+||.+ ..|++||+||..
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~ 228 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN 228 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence 988999999999999999999999999999999999999999976 557999999 9999999998 889999999997
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
- |+.++|.|.=-+|+|||+ |||+|||+-.|=++..+|+
T Consensus 229 N-----vs~v~fhp~lpiiisgsE-----------DGTvriWhs~Ty~lE~tLn-------------------------- 266 (794)
T KOG0276|consen 229 N-----VSFVFFHPELPIIISGSE-----------DGTVRIWNSKTYKLEKTLN-------------------------- 266 (794)
T ss_pred c-----ceEEEecCCCcEEEEecC-----------CccEEEecCcceehhhhhh--------------------------
Confidence 5 899999999999999876 5999999977666554443
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
..+++||+++-.+.+..++.|...|.|-+
T Consensus 267 --------~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 267 --------YGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred --------cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 34479999999999999999998887643
No 39
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1e-32 Score=268.84 Aligned_cols=300 Identities=13% Similarity=0.157 Sum_probs=233.8
Q ss_pred cEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCE---EEEEEEeecCCCcceeeeeeeEe
Q 016446 5 KVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDS---LITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 5 ~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~---l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
.|..|-.+.+.|+++|+||++|+|++. |++..++.||. +.|.++++---++. +++ ++.| ++++||
T Consensus 107 WVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght-~~ik~v~~v~~n~~~~~fvs----as~D------qtl~Lw 174 (423)
T KOG0313|consen 107 WVSSVKGASKWILTGSYDGTSRIWDLK-GKSIKTIVGHT-GPIKSVAWVIKNSSSCLFVS----ASMD------QTLRLW 174 (423)
T ss_pred hhhhhcccCceEEEeecCCeeEEEecC-CceEEEEecCC-cceeeeEEEecCCccceEEE----ecCC------ceEEEE
Confidence 355666678999999999999999995 99999999985 89997776555444 777 4578 888888
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecC
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRS 161 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~ 161 (389)
-+..|+.......-..+|-..+.+|+-. ++|..++|||.|.++++|+.+ -++.-++..... .=...++.
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~-~~~~~~~E~~s~---~rrk~~~~------ 243 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVE-TDEEDELESSSN---RRRKKQKR------ 243 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccC-CCccccccccch---hhhhhhhh------
Confidence 8877765211111112455567788886 899999999999999999942 222222221100 00001110
Q ss_pred CCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc
Q 016446 162 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 241 (389)
Q Consensus 162 s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~ 241 (389)
++. ..++..+-+|.||+..|.+|.|.+ .+.+.++|.|+|||.||+++|.+..++.+. ....+|..+|..+
T Consensus 244 --~~~-----~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 244 --EKE-----GGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSK 313 (423)
T ss_pred --hhc-----ccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccc
Confidence 011 136788999999999999999963 788999999999999999999998887765 5899999999999
Q ss_pred EEEEEc-CCeEEEEeCC---Cc-EEEEeccCcCCcCCCCeeEEEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 242 LFLTFR-NRTVAVWNFR---GE-LVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 242 ~laS~s-D~tIklWd~~---G~-~l~tl~gh~~~~~~~~v~sv~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
+||+|+ |..|||||.+ |. ..++|.||++| |.+|-++|-. ..|+|||. |+++||||+++
T Consensus 314 Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw-----Vssvkwsp~~~~~~~S~S~-----------D~t~klWDvRS 377 (423)
T KOG0313|consen 314 LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW-----VSSVKWSPTNEFQLVSGSY-----------DNTVKLWDVRS 377 (423)
T ss_pred eeeecCCCCceeecCCCCCCCceeEEeeecchhh-----hhheecCCCCceEEEEEec-----------CCeEEEEEecc
Confidence 999998 9999999984 44 45799999999 7999999954 56677766 59999999999
Q ss_pred Ce-EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 316 GK-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 316 g~-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
-+ .+.+|.+|. +.|.++.++ +|..|+||+.|++||+..
T Consensus 378 ~k~plydI~~h~----------------------------------DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 378 TKAPLYDIAGHN----------------------------------DKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred CCCcceeeccCC----------------------------------ceEEEEecc-CCceEEeccCcceEEEec
Confidence 88 899999998 589999997 577899999999999864
No 40
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=100.00 E-value=8.3e-31 Score=247.72 Aligned_cols=276 Identities=14% Similarity=0.172 Sum_probs=211.2
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
+..+++.+.|+++++||..++++++++.++ ..+++++|+|||+.|+.+ +..+ ..+++|++.+|+.. .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~--~~~~~l~~~~dg~~l~~~---~~~~------~~v~~~d~~~~~~~--~ 67 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG--QRPRGITLSKDGKLLYVC---ASDS------DTIQVIDLATGEVI--G 67 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC--CCCCceEECCCCCEEEEE---ECCC------CeEEEEECCCCcEE--E
Confidence 357889999999999999999999999875 347899999999977443 3355 67889998888752 1
Q ss_pred eeEeeecccCceeEEEecCCCeEEE-EecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEE
Q 016446 93 ALFESESLKWPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 93 ~l~~~~~~~~~~~v~Fs~pdG~~La-s~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tikl 169 (389)
.+. ....+..++|+ |+|+.|+ +++.|++|++||+.+++++..+. +..+.+++|+ +|.++++++.+ ...+..
T Consensus 68 -~~~--~~~~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~--~~~~~~ 141 (300)
T TIGR03866 68 -TLP--SGPDPELFALH-PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSET--TNMAHF 141 (300)
T ss_pred -ecc--CCCCccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecC--CCeEEE
Confidence 111 11224568998 8998664 55679999999999998888876 4568899999 57788776433 246788
Q ss_pred EEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEcccCC-------CceEEEEEcCCCc
Q 016446 170 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEF-------MTPSAFIFLYENQ 241 (389)
Q Consensus 170 Wd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~gh~-------~~v~sv~fspdg~ 241 (389)
||..+++++..+... .....++|+ ++++.+++++ .|++|++||++++++++.+..+. .....++|+|||+
T Consensus 142 ~d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 142 IDTKTYEIVDNVLVD-QRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred EeCCCCeEEEEEEcC-CCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence 999999988766532 445678887 6778776654 79999999999999877664332 1345689999999
Q ss_pred EEEEE-c-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 242 LFLTF-R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 242 ~laS~-s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
++..+ . +++|.+||++ ++++..+..+ .. +.+++|+|||++|++++. .+++|++||+.++++
T Consensus 220 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~-----~~~~~~~~~g~~l~~~~~----------~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 220 TAFVALGPANRVAVVDAKTYEVLDYLLVG-QR-----VWQLAFTPDEKYLLTTNG----------VSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEEEeC-CC-----cceEEECCCCCEEEEEcC----------CCCeEEEEECCCCcE
Confidence 85443 4 7899999997 8887766422 22 689999999999998753 358999999999999
Q ss_pred EEEecCC
Q 016446 319 LAKINAT 325 (389)
Q Consensus 319 l~tl~gH 325 (389)
+.+++..
T Consensus 284 ~~~~~~~ 290 (300)
T TIGR03866 284 IKSIKVG 290 (300)
T ss_pred EEEEEcc
Confidence 9999754
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=289.11 Aligned_cols=272 Identities=16% Similarity=0.189 Sum_probs=234.9
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 123 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~ 123 (389)
+..|..++|.|--..|+++. -. ..|.+||.+.|.++.. | .+|-|.++.|+|. |.+.+.+||++|.
T Consensus 9 SsRvKglsFHP~rPwILtsl----Hs------G~IQlWDYRM~tli~r---F-deHdGpVRgv~FH-~~qplFVSGGDDy 73 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSL----HS------GVIQLWDYRMGTLIDR---F-DEHDGPVRGVDFH-PTQPLFVSGGDDY 73 (1202)
T ss_pred cccccceecCCCCCEEEEee----cC------ceeeeehhhhhhHHhh---h-hccCCccceeeec-CCCCeEEecCCcc
Confidence 46899999999998887743 22 6788999999987432 3 2677888999997 8999999999999
Q ss_pred eEEEEeCCCCeEEEEecC--CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCe
Q 016446 124 IYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 200 (389)
Q Consensus 124 tiklWdl~~g~~l~tl~~--~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~ 200 (389)
+||||+.++-+|+++|.+ +.|+.+.|++ =-+++++ |+|+||||||.++++|+.+|+||.|-|...+|. |..+.
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSA---SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh-ptEDl 149 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSA---SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH-PTEDL 149 (1202)
T ss_pred EEEEEecccceehhhhccccceeEEeeccCCCceEEEc---cCCCeEEEEeccCCceEEEEecCceEEEeeccC-Cccce
Confidence 999999999999999975 5899999994 5577664 678999999999999999999999999999998 67889
Q ss_pred EEEEeCCCcEEEEECCC--------C-------------------e--EEEEcccCCCceEEEEEcCCCcEEEEEc-CCe
Q 016446 201 LLVKQENENLQILDVRN--------A-------------------E--LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 250 (389)
Q Consensus 201 l~~~s~D~tIklWd~~t--------g-------------------~--~~~~l~gh~~~v~sv~fspdg~~laS~s-D~t 250 (389)
++++|-|.|||+||+.. | . ..++|+||.-.|+.+||.|.-.+|+||+ |+.
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq 229 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 229 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence 99999999999999853 1 0 2356899999999999999999999999 999
Q ss_pred EEEEeCC-Cc--EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCC
Q 016446 251 VAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 327 (389)
Q Consensus 251 IklWd~~-G~--~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~ 327 (389)
||+|..+ -+ .+-|..||.+. |.++-|.|....|+|.|+ |++||+||+...+++++++--.
T Consensus 230 VKlWrmnetKaWEvDtcrgH~nn-----Vssvlfhp~q~lIlSnsE-----------DksirVwDm~kRt~v~tfrren- 292 (1202)
T KOG0292|consen 230 VKLWRMNETKAWEVDTCRGHYNN-----VSSVLFHPHQDLILSNSE-----------DKSIRVWDMTKRTSVQTFRREN- 292 (1202)
T ss_pred eeEEEeccccceeehhhhcccCC-----cceEEecCccceeEecCC-----------CccEEEEecccccceeeeeccC-
Confidence 9999996 33 57789999987 799999999999999765 5999999999999999997544
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcE
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 384 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tI 384 (389)
++-|.||-+|..+.+|.|=..|.+
T Consensus 293 ---------------------------------dRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 293 ---------------------------------DRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred ---------------------------------CeEEEEEecCCcceeeeecCCceE
Confidence 488899999999988877665654
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.6e-33 Score=262.64 Aligned_cols=239 Identities=12% Similarity=0.199 Sum_probs=202.9
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCC-CCeEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED 174 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~-~g~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t 174 (389)
+.+-|....|+ |||..+|||+.|..|-||++. ..+...++ |.+.|.+|.|. ++..|+++ +.|++++.||++|
T Consensus 46 h~geI~~~~F~-P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~---gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 46 HKGEIYTIKFH-PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSC---GTDKTVRGWDAET 121 (338)
T ss_pred CcceEEEEEEC-CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEe---cCCceEEEEeccc
Confidence 44445668998 899999999999999999973 23333444 56799999999 89999875 6679999999999
Q ss_pred CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEE
Q 016446 175 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 253 (389)
Q Consensus 175 G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIkl 253 (389)
|++.+.+++|..-++++.-.......+.+++.|+|+||||+++.+++++++.- -++.+|.|..++..+.||. |+.||+
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k-yqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK-YQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc-eeEEEEEecccccceeeccccCceee
Confidence 99999999999999988844222244445789999999999999999997543 4799999999999999999 999999
Q ss_pred EeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC----CeEEEEecCCCCC
Q 016446 254 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT----GKCLAKINATNCS 328 (389)
Q Consensus 254 Wd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t----g~~l~tl~gH~~~ 328 (389)
||+. ++++.+|+||.+. |..++.||+|.+|.|-++| .++|+||+.. .+|+..++||...
T Consensus 201 Wd~r~~d~~~~lsGh~Dt-----It~lsls~~gs~llsnsMd-----------~tvrvwd~rp~~p~~R~v~if~g~~hn 264 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADT-----ITGLSLSRYGSFLLSNSMD-----------NTVRVWDVRPFAPSQRCVKIFQGHIHN 264 (338)
T ss_pred eccccCcceEEeecccCc-----eeeEEeccCCCcccccccc-----------ceEEEEEecccCCCCceEEEeecchhh
Confidence 9996 9999999999987 7999999999999999886 7999999873 6689999999842
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+| .-...+++||++..+..||.|+.|.+||
T Consensus 265 -fe-----------------------------knlL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 265 -FE-----------------------------KNLLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred -hh-----------------------------hhcceeeccCCCCccccccccceEEEee
Confidence 11 2344689999999999999999999998
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-31 Score=276.50 Aligned_cols=319 Identities=20% Similarity=0.215 Sum_probs=245.5
Q ss_pred ccccEEEEEeeccE--EEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCC---C------
Q 016446 2 KRTKVIEIVAARDI--VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN---F------ 70 (389)
Q Consensus 2 ~~~~v~~i~~~~~~--~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d---~------ 70 (389)
+|..|..+..+.++ ||++..||.||||+..++..+.++|||. ..|..+-|...|..|||+|.|+..= +
T Consensus 64 ~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK-~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl 142 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHK-AAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL 142 (888)
T ss_pred ccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccc-cceEEEEEcccCceEeecCCCccEEEEEeccceee
Confidence 34567777776444 4999999999999999999999999985 9999999999999999955432110 0
Q ss_pred -----------------------cceeeeeeeEeEeccCCCCCcceeEe--eecccCceeEEEecCCCeEEEEecCCCeE
Q 016446 71 -----------------------SSLKCRSTKIEYIRRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVLTYSAQDSIY 125 (389)
Q Consensus 71 -----------------------~~l~~~~~~l~~i~~g~~~~~~~l~~--~~~~~~~~~v~Fs~pdG~~Las~s~D~ti 125 (389)
++=|-..+++||+.+..+ |. -.+.+-+++++++ + +.+++++.|+.+
T Consensus 143 ~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC------f~Thvd~r~Eiw~l~~~-~--~~lvt~~~dse~ 213 (888)
T KOG0306|consen 143 FRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC------FETHVDHRGEIWALVLD-E--KLLVTAGTDSEL 213 (888)
T ss_pred EEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee------eeEEecccceEEEEEEe-c--ceEEEEecCCce
Confidence 222223344444444433 11 1244446667776 3 677778888888
Q ss_pred EEEeCC-----------------------------------CCe------------------------------------
Q 016446 126 KVFDLK-----------------------------------NYT------------------------------------ 134 (389)
Q Consensus 126 klWdl~-----------------------------------~g~------------------------------------ 134 (389)
++|++. +.+
T Consensus 214 ~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkk 293 (888)
T KOG0306|consen 214 KVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKK 293 (888)
T ss_pred EEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhh
Confidence 888870 000
Q ss_pred -----------------------------------------------------EEEEe--------------------cC
Q 016446 135 -----------------------------------------------------MLYSI--------------------SD 141 (389)
Q Consensus 135 -----------------------------------------------------~l~tl--------------------~~ 141 (389)
|.+.+ |.
T Consensus 294 a~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR 373 (888)
T KOG0306|consen 294 AETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHR 373 (888)
T ss_pred ccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccch
Confidence 00000 12
Q ss_pred CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE
Q 016446 142 KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 220 (389)
Q Consensus 142 ~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~ 220 (389)
..|+++.|| +...+++++. ..||+|+..|++|++|++. +-+....|. |.+.+++.|...|.+.|+|+.+..+
T Consensus 374 ~dVRsl~vS~d~~~~~Sga~----~SikiWn~~t~kciRTi~~--~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLASGAG----ESIKIWNRDTLKCIRTITC--GYILASKFV-PGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred hheeEEEeecCceeeeecCC----CcEEEEEccCcceeEEecc--ccEEEEEec-CCCceEEEeccCCceEEEEeehhhh
Confidence 368899999 5555555432 4799999999999999984 567888887 6677888899999999999999999
Q ss_pred EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC------CcEE--------EEeccCcCCcCCCCeeEEEECCCC
Q 016446 221 MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR------GELV--------TSFEDHLLWHPDCNTNNIYITSDQ 285 (389)
Q Consensus 221 ~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~------G~~l--------~tl~gh~~~~~~~~v~sv~fSpdG 285 (389)
+++.+.|.+.+|+++.+||++.+++++ |.|||+||+. |... ++|+=-. .|.+|.+||||
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d------dvL~v~~Spdg 520 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED------DVLCVSVSPDG 520 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc------cEEEEEEcCCC
Confidence 999999999999999999999999999 9999999952 3221 2333111 28999999999
Q ss_pred CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEE
Q 016446 286 DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 365 (389)
Q Consensus 286 ~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~s 365 (389)
++||.+=-| .|+|++-+.|=+.--+|.||. -||.|
T Consensus 521 k~LaVsLLd-----------nTVkVyflDtlKFflsLYGHk----------------------------------LPV~s 555 (888)
T KOG0306|consen 521 KLLAVSLLD-----------NTVKVYFLDTLKFFLSLYGHK----------------------------------LPVLS 555 (888)
T ss_pred cEEEEEecc-----------CeEEEEEecceeeeeeecccc----------------------------------cceeE
Confidence 999998664 899999999999999999998 49999
Q ss_pred EEECCCCCEEEEecCCCcEEEcc
Q 016446 366 LFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 366 vafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+..|||++.|+|||.|++||+|-
T Consensus 556 mDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 556 MDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred EeccCCcCeEEeccCCCceEEec
Confidence 99999999999999999999995
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=269.73 Aligned_cols=292 Identities=16% Similarity=0.220 Sum_probs=244.5
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC-----CcceeEeeecccCceeEEE
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-----SGFALFESESLKWPGFVEF 108 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~-----~~~~l~~~~~~~~~~~v~F 108 (389)
++.+++.++...-+.|-.|||||++|++ |+.| .-|.+|+..+||+- +.+.-|- -+-..+..+.|
T Consensus 203 ~l~r~IKFg~KSh~EcA~FSPDgqyLvs----gSvD------GFiEVWny~~GKlrKDLkYQAqd~fM-Mmd~aVlci~F 271 (508)
T KOG0275|consen 203 QLARSIKFGQKSHVECARFSPDGQYLVS----GSVD------GFIEVWNYTTGKLRKDLKYQAQDNFM-MMDDAVLCISF 271 (508)
T ss_pred HhhhheecccccchhheeeCCCCceEee----cccc------ceeeeehhccchhhhhhhhhhhccee-ecccceEEEee
Confidence 3455677777778899999999999999 5566 78889999999982 1111221 01223567999
Q ss_pred ecCCCeEEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec
Q 016446 109 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 184 (389)
Q Consensus 109 s~pdG~~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~ 184 (389)
| .|..+||+|++||.||+|.+.+|+|++.+. ...|.++.|| |+..++++ +.|.|+|+--+..|+||+.|.||
T Consensus 272 S-RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~---sfD~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 272 S-RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSA---SFDQTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred c-ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcc---cccceEEEeccccchhHHHhcCc
Confidence 8 899999999999999999999999998885 4689999999 88887764 67799999999999999999999
Q ss_pred CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc--cCCCceEEEEEcCC-CcEEEEEc-CCeEEEEeCCCcE
Q 016446 185 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFRGEL 260 (389)
Q Consensus 185 ~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~--gh~~~v~sv~fspd-g~~laS~s-D~tIklWd~~G~~ 260 (389)
..-++++.|. ++|..++++|.|+|||+|+.++++|+.+++ +..-+|.+|...|. -..++.+. .+||-|-+++|+.
T Consensus 348 sSyvn~a~ft-~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 348 SSYVNEATFT-DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred cccccceEEc-CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 9999999998 789999999999999999999999999985 34568899887764 34566666 9999999999999
Q ss_pred EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCC
Q 016446 261 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 340 (389)
Q Consensus 261 l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~ 340 (389)
+++|..-.- ..+.--+.+.||-|.++-+.++ |+.+.-+.+.+|++-++|.-|+
T Consensus 427 VrsfsSGkR--EgGdFi~~~lSpkGewiYcigE-----------D~vlYCF~~~sG~LE~tl~VhE-------------- 479 (508)
T KOG0275|consen 427 VRSFSSGKR--EGGDFINAILSPKGEWIYCIGE-----------DGVLYCFSVLSGKLERTLPVHE-------------- 479 (508)
T ss_pred EeeeccCCc--cCCceEEEEecCCCcEEEEEcc-----------CcEEEEEEeecCceeeeeeccc--------------
Confidence 999973211 1112356778999999988755 5999999999999999999998
Q ss_pred CCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 341 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|-.++-+|-.+.|||=++||++|||.
T Consensus 480 --------------------kdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 480 --------------------KDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --------------------ccccccccCcccchhhhhcccchhhhcC
Confidence 5788999999999999999999999996
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.2e-33 Score=278.82 Aligned_cols=287 Identities=15% Similarity=0.204 Sum_probs=244.6
Q ss_pred eeeeeeecCCcceEEEEEEee-CCCEEEEEEEeecCCCcceeeeeeeEeEecc-CCCCCcceeEeeecccCceeEEEecC
Q 016446 34 RRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDV 111 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~sp-dg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~-g~~~~~~~l~~~~~~~~~~~v~Fs~p 111 (389)
+.+.++.||. ..|.++-|.| -|..|+| ++-| ..|+||++.. |++..+ | ..|...|.+++|+ +
T Consensus 205 k~~~~~~gH~-kgvsai~~fp~~~hLlLS----~gmD------~~vklW~vy~~~~~lrt---f-~gH~k~Vrd~~~s-~ 268 (503)
T KOG0282|consen 205 KLSHNLSGHT-KGVSAIQWFPKKGHLLLS----GGMD------GLVKLWNVYDDRRCLRT---F-KGHRKPVRDASFN-N 268 (503)
T ss_pred hheeeccCCc-cccchhhhccceeeEEEe----cCCC------ceEEEEEEecCcceehh---h-hcchhhhhhhhcc-c
Confidence 5677899986 8999999999 7999988 6788 8999999955 766222 1 2344457789998 8
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcC-C-ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-G-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 188 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~-g-~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~ 188 (389)
+|+.+.|+|.|+++||||+++|+|+..++ +..+.+|.|.| + ..++++ ..|+.|+.||+++|+.+++...|.+.+
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G---~sd~ki~~wDiRs~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG---GSDKKIRQWDIRSGKVVQEYDRHLGAI 345 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe---cCCCcEEEEeccchHHHHHHHhhhhhe
Confidence 99999999999999999999999999998 56789999994 4 566565 455899999999999999999999999
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCC----cEEE
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG----ELVT 262 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G----~~l~ 262 (389)
..+.|. +++.+++++++|++++||+.+.+-.++.. ..+.....+++.+|++..++.=+ |+.|-+..+.- ...+
T Consensus 346 ~~i~F~-~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 346 LDITFV-DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred eeeEEc-cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence 999998 78999999999999999999988876653 34445678899999999999889 99999988642 3457
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
.++||... ++-..|.|||||.+|+||+. ||.+.+||.+|-+++.+|++|+
T Consensus 425 ~feGh~va---Gys~~v~fSpDG~~l~SGds-----------dG~v~~wdwkt~kl~~~lkah~---------------- 474 (503)
T KOG0282|consen 425 RFEGHSVA---GYSCQVDFSPDGRTLCSGDS-----------DGKVNFWDWKTTKLVSKLKAHD---------------- 474 (503)
T ss_pred hhcceecc---CceeeEEEcCCCCeEEeecC-----------CccEEEeechhhhhhhccccCC----------------
Confidence 89999864 33478999999999999865 5999999999999999999997
Q ss_pred ccccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEcc
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWS 388 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~ 388 (389)
+.+..+.|+|-- ..+||++.||.||+|+
T Consensus 475 ------------------~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 ------------------QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ------------------cceEEEEecCCCcceeEecccCceeEecC
Confidence 699999999976 5799999999999996
No 46
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.1e-31 Score=275.96 Aligned_cols=237 Identities=14% Similarity=0.138 Sum_probs=194.4
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE---------------EecCCcEEEEEEcC--CceEEEEecCCCCeeE
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY---------------SISDKHVQEIKISP--GIMLLIFNRSSSHVPL 167 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~---------------tl~~~~V~~vafS~--g~~la~~~~~s~d~ti 167 (389)
..+++ +|+..+++++.+..+..|+...|..+. ..|...|.+|+|+| +++||++ +.|++|
T Consensus 25 ~~~~~-~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg---S~DgtI 100 (493)
T PTZ00421 25 PSTAL-WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTA---SEDGTI 100 (493)
T ss_pred ccccc-CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE---eCCCEE
Confidence 45666 788888888889888899875554332 22346899999996 6688776 456899
Q ss_pred EEEEcCCC-------eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC
Q 016446 168 KILSIEDG-------TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240 (389)
Q Consensus 168 klWd~~tG-------~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg 240 (389)
+|||+.++ +++.+|.+|...|..|+|++..+..|++++.|++|+|||+++++++..+.+|...|.+++|+|+|
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 99999876 46789999999999999984334688889999999999999999999999999999999999999
Q ss_pred cEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe-
Q 016446 241 QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK- 317 (389)
Q Consensus 241 ~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~- 317 (389)
++|++++ |++|+|||++ |+++.++.+|.... +..+.|.|++.+|++++.+ .+.|++|+|||+.+.+
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~----~~~~~w~~~~~~ivt~G~s-------~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK----SQRCLWAKRKDLIITLGCS-------KSQQRQIMLWDTRKMAS 249 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCc----ceEEEEcCCCCeEEEEecC-------CCCCCeEEEEeCCCCCC
Confidence 9999999 9999999996 99999999998652 4578899999999887643 3568999999998654
Q ss_pred EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec-CCCcEEEccC
Q 016446 318 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 389 (389)
Q Consensus 318 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs-~D~tIrlW~~ 389 (389)
++.++..|.. ..+....|+||+++|++|+ .|++||+||.
T Consensus 250 p~~~~~~d~~---------------------------------~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 250 PYSTVDLDQS---------------------------------SALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred ceeEeccCCC---------------------------------CceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 4554444431 3677789999999999988 4999999983
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-32 Score=267.72 Aligned_cols=288 Identities=11% Similarity=0.178 Sum_probs=232.1
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe-ccCCCCCcceeEe-eecccCceeEEEecC
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFE-SESLKWPGFVEFDDV 111 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i-~~g~~~~~~~l~~-~~~~~~~~~v~Fs~p 111 (389)
+.-+.|..| .+.||=+-|||+|++|||+| .| .++-+|.+ ..+++ ...++ -.+...+.++.|| |
T Consensus 215 qt~qil~~h-tdEVWfl~FS~nGkyLAsaS----kD------~Taiiw~v~~d~~~---kl~~tlvgh~~~V~yi~wS-P 279 (519)
T KOG0293|consen 215 QTWQILQDH-TDEVWFLQFSHNGKYLASAS----KD------STAIIWIVVYDVHF---KLKKTLVGHSQPVSYIMWS-P 279 (519)
T ss_pred hhhhhHhhC-CCcEEEEEEcCCCeeEeecc----CC------ceEEEEEEecCcce---eeeeeeecccCceEEEEEC-C
Confidence 444567766 59999999999999999954 55 67778887 44442 11233 1233335668998 8
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec-CC
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-LH 186 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~-~~ 186 (389)
|.++|++|+.|..+++||+.+|.+.+.++ +..|.++++. ||..++++ +.|++|--||+ +|..+..-++- ..
T Consensus 280 DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~G---s~dr~i~~wdl-Dgn~~~~W~gvr~~ 355 (519)
T KOG0293|consen 280 DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTG---SPDRTIIMWDL-DGNILGNWEGVRDP 355 (519)
T ss_pred CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEec---CCCCcEEEecC-Ccchhhcccccccc
Confidence 99999999999999999999999987775 3689999999 68888776 55689999996 67877766532 24
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe
Q 016446 187 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl 264 (389)
.+..++.. +||.++++...|..|++++.++..++.....| ..+.++..|.||++++.-= ++.|++||++ ..+++.+
T Consensus 356 ~v~dlait-~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 356 KVHDLAIT-YDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred eeEEEEEc-CCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh
Confidence 57888886 88999999999999999999998887655544 5899999999999998885 9999999997 8899999
Q ss_pred ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcc
Q 016446 265 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 344 (389)
Q Consensus 265 ~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~ 344 (389)
.||...+ ..|.+..=-.|.+++||||+| +.|+||+-.+|+++.+|.||.
T Consensus 434 ~Ghkq~~--fiIrSCFgg~~~~fiaSGSED-----------~kvyIWhr~sgkll~~LsGHs------------------ 482 (519)
T KOG0293|consen 434 FGHKQGH--FIIRSCFGGGNDKFIASGSED-----------SKVYIWHRISGKLLAVLSGHS------------------ 482 (519)
T ss_pred hcccccc--eEEEeccCCCCcceEEecCCC-----------ceEEEEEccCCceeEeecCCc------------------
Confidence 9998653 123333333467899998765 899999999999999999998
Q ss_pred ccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEccC
Q 016446 345 KLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~~ 389 (389)
..|++|+++|.. .++||||.|||||||.+
T Consensus 483 ----------------~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 483 ----------------KTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred ----------------ceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 589999999966 68999999999999964
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=287.47 Aligned_cols=233 Identities=15% Similarity=0.213 Sum_probs=205.8
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
+..++|. |.-..+.++-..|.|+|||..=|.|+..| |.+.|+.|+|+|.|=|.++ +++|.+||+|+..+.+|+.|
T Consensus 12 vKglsFH-P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVS--GGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 12 VKGLSFH-PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVS--GGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred ccceecC-CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEe--cCCccEEEEEecccceehhh
Confidence 3569997 88889999999999999999888888777 4679999999975544443 57789999999999999999
Q ss_pred EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc
Q 016446 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 259 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~ 259 (389)
|.||.+-|+.+.|+ +.---|+++|.|.||||||.++++|+.+++||+..|.+..|.|.-.+++|+| |+|||+||+.|=
T Consensus 89 L~GHlDYVRt~~FH-heyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFH-HEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred hccccceeEEeecc-CCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 99999999999998 4446899999999999999999999999999999999999999999999999 999999995431
Q ss_pred ----------------------E--------EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 260 ----------------------L--------VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 260 ----------------------~--------l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
+ ...|+||.-. |+-+||.|.--.|+||+.| ..||
T Consensus 168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-----VNwaAfhpTlpliVSG~DD-----------RqVK 231 (1202)
T KOG0292|consen 168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-----VNWAAFHPTLPLIVSGADD-----------RQVK 231 (1202)
T ss_pred hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc-----cceEEecCCcceEEecCCc-----------ceee
Confidence 1 2578899765 7999999999999998765 8999
Q ss_pred EEeCCCCe--EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 310 VSSILTGK--CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 310 lWd~~tg~--~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
||-...-+ .+-+.+||. +.|.+|-|+|.-..|.|.|+|++||+|
T Consensus 232 lWrmnetKaWEvDtcrgH~----------------------------------nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 232 LWRMNETKAWEVDTCRGHY----------------------------------NNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred EEEeccccceeehhhhccc----------------------------------CCcceEEecCccceeEecCCCccEEEE
Confidence 99976555 467889998 589999999999999999999999999
Q ss_pred cC
Q 016446 388 SN 389 (389)
Q Consensus 388 ~~ 389 (389)
|.
T Consensus 278 Dm 279 (1202)
T KOG0292|consen 278 DM 279 (1202)
T ss_pred ec
Confidence 84
No 49
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-32 Score=250.09 Aligned_cols=234 Identities=15% Similarity=0.216 Sum_probs=206.0
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
..+.+..|.|. .||+|..+++.|+|||||+...|.|+++.. +++|.+++.+ |+..+|++ +.|+-+.+||++||
T Consensus 16 ~qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~---GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 16 AQGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASC---GGDKAVQVWDVNTG 91 (307)
T ss_pred cccceEEEEEc-cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccC---CCCceEEEEEcccC
Confidence 44566789996 999999999999999999999999998875 6799999999 99999864 67899999999999
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC--eEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA--ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg--~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
+.++.|.+|.+.++.|+|++ +...+++||.|.++|+||.++. +++|+|..-.+.|.+|..+ +..+++|| |||+|
T Consensus 92 kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVR 168 (307)
T ss_pred eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEE
Confidence 99999999999999999984 4677888999999999999864 6899999999999999775 56788999 99999
Q ss_pred EEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCc
Q 016446 253 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 331 (389)
Q Consensus 253 lWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~ 331 (389)
.+|++ |++....-||. |+++.|||||+....+|.| ++|||-|-.||++++..+||.+-
T Consensus 169 tydiR~G~l~sDy~g~p-------it~vs~s~d~nc~La~~l~-----------stlrLlDk~tGklL~sYkGhkn~--- 227 (307)
T KOG0316|consen 169 TYDIRKGTLSSDYFGHP-------ITSVSFSKDGNCSLASSLD-----------STLRLLDKETGKLLKSYKGHKNM--- 227 (307)
T ss_pred EEEeecceeehhhcCCc-------ceeEEecCCCCEEEEeecc-----------ceeeecccchhHHHHHhcccccc---
Confidence 99998 99877776764 8999999999999998876 89999999999999999999831
Q ss_pred ccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 332 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+-=..+.|+.--..++|||+||.|-+||.
T Consensus 228 -----------------------------eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 228 -----------------------------EYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred -----------------------------eeeeeeeecccceeEEeccCCceEEEEEe
Confidence 12234677777888999999999999984
No 50
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2e-30 Score=251.78 Aligned_cols=312 Identities=9% Similarity=0.068 Sum_probs=256.3
Q ss_pred EEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
|..|-.. +..+|++..|-...||++.+|..+..+.+|. +.|.++.||.||.+||+ |.-+ ..++||.+
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK-DSVt~~~FshdgtlLAT----Gdms------G~v~v~~~ 135 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHK-DSVTCCSFSHDGTLLAT----GDMS------GKVLVFKV 135 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCC-CceEEEEEccCceEEEe----cCCC------ccEEEEEc
Confidence 4444444 7889999999999999999999999999985 99999999999999999 6677 78889999
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCceEEEEec
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNR 160 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~la~~~~ 160 (389)
.+|.. ..++++ ...-+.-+.+. |-+.+|+.|+.||.+-.|.+.++...+.+ |+..+.+=.|. ||++++++.
T Consensus 136 stg~~--~~~~~~--e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy- 209 (399)
T KOG0296|consen 136 STGGE--QWKLDQ--EVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY- 209 (399)
T ss_pred ccCce--EEEeec--ccCceEEEEec-ccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe-
Confidence 99875 233331 22233448887 89999999999999999999885544555 45689999999 699998874
Q ss_pred CCCCeeEEEEEcCCCeEEEEEeecC-CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc--------cCCCce
Q 016446 161 SSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--------TEFMTP 231 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~~~~-~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~--------gh~~~v 231 (389)
.|+||++||..||+.+.++.... .....+.++ ..+..++.++.|+.+++=+..+|+.+..++ .|...+
T Consensus 210 --~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~-~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 210 --DDGTIIVWNPKTGQPLHKITQAEGLELPCISLN-LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred --cCceEEEEecCCCceeEEecccccCcCCccccc-cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 36899999999999999987322 234666776 457788888999999999999999888777 466655
Q ss_pred EEEEE---cCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 232 SAFIF---LYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 232 ~sv~f---spdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
.+|.| +..=.+.|.|+ ||+|-|||+.-.-++..-.|... |..+-|-+ -.+|+++|.+ |+
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-----V~~l~w~~-t~~l~t~c~~-----------g~ 349 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-----VTKLKWLN-TDYLLTACAN-----------GK 349 (399)
T ss_pred hhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc-----eEEEEEcC-cchheeeccC-----------ce
Confidence 55555 55777899999 99999999984444444457766 78999988 7888888875 99
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 308 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 308 IklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
||+||.+||+|+.++.||+ ..|...+++||++.++|+|.|++.|+.
T Consensus 350 v~~wDaRtG~l~~~y~GH~----------------------------------~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 350 VRQWDARTGQLKFTYTGHQ----------------------------------MGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred EEeeeccccceEEEEecCc----------------------------------hheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 9999999999999999999 699999999999999999999999987
Q ss_pred c
Q 016446 388 S 388 (389)
Q Consensus 388 ~ 388 (389)
+
T Consensus 396 ~ 396 (399)
T KOG0296|consen 396 E 396 (399)
T ss_pred e
Confidence 5
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-30 Score=246.13 Aligned_cols=228 Identities=14% Similarity=0.221 Sum_probs=194.0
Q ss_pred cccCceeEEEecCC-CeEEEEecCCCeEEEEeCCC---CeEEEEe---cCCcEEEEEEcC-CceEEEEecCCCCeeEEEE
Q 016446 99 SLKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKN---YTMLYSI---SDKHVQEIKISP-GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 99 ~~~~~~~v~Fs~pd-G~~Las~s~D~tiklWdl~~---g~~l~tl---~~~~V~~vafS~-g~~la~~~~~s~d~tiklW 170 (389)
+.+-+++|||+ |- |.+|||+|.|++||+|++.. -.|...+ |...|++||+|| |++||++ |.|.|+-||
T Consensus 13 h~~r~W~~awh-p~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~a---SFD~t~~Iw 88 (312)
T KOG0645|consen 13 HKDRVWSVAWH-PGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASA---SFDATVVIW 88 (312)
T ss_pred CCCcEEEEEec-cCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEe---eccceEEEe
Confidence 33445689998 66 88999999999999999874 3466666 346899999996 9999876 566899999
Q ss_pred EcCCC--eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC---eEEEEcccCCCceEEEEEcCCCcEEEE
Q 016446 171 SIEDG--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 171 d~~tG--~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg---~~~~~l~gh~~~v~sv~fspdg~~laS 245 (389)
.=..| +|+.+|+||...|++|+|+ .+|.+||+.+.|+.|-||.+..+ +|..+|++|..-|.-|+|.|.-.+|+|
T Consensus 89 ~k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S 167 (312)
T KOG0645|consen 89 KKEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFS 167 (312)
T ss_pred ecCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEE
Confidence 85433 7999999999999999999 67999999999999999999854 488899999999999999999999999
Q ss_pred Ec-CCeEEEEeCC-C---cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEE
Q 016446 246 FR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 320 (389)
Q Consensus 246 ~s-D~tIklWd~~-G---~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~ 320 (389)
+| |+|||+|+.. + +|+++|.+|..- |++++|.|.|..|+|++. |+||+||-.. .
T Consensus 168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~T-----VW~~~F~~~G~rl~s~sd-----------D~tv~Iw~~~-----~ 226 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWECVQTLDGHENT-----VWSLAFDNIGSRLVSCSD-----------DGTVSIWRLY-----T 226 (312)
T ss_pred eccCCeEEEEeecCCCCeeEEEEecCccce-----EEEEEecCCCceEEEecC-----------CcceEeeeec-----c
Confidence 99 9999999874 3 699999999874 899999999999999876 4999999743 2
Q ss_pred EecC-CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 321 KINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 321 tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+.+ |. ..++.|++. + -.||||+.|+.|+|..
T Consensus 227 ~~~~~~s----------------------------------r~~Y~v~W~-~-~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 227 DLSGMHS----------------------------------RALYDVPWD-N-GVIASGGGDDAIRLFK 259 (312)
T ss_pred Ccchhcc----------------------------------cceEeeeec-c-cceEeccCCCEEEEEE
Confidence 3333 32 589999999 4 4799999999999974
No 52
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.2e-32 Score=268.38 Aligned_cols=273 Identities=13% Similarity=0.110 Sum_probs=219.6
Q ss_pred ccEEEEEee------ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 4 TKVIEIVAA------RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 4 ~~v~~i~~~------~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
+||++.|+. |..|++++.+|...||+. +.=...++...|+..|+++-+|++|..+|| |..+ ..
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS----gD~g------G~ 161 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMIS----GDKG------GM 161 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEE----cCCC------ce
Confidence 466666665 889999999999999997 344444555567799999999999999999 4455 56
Q ss_pred eeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEE--ecCCcEEEEEEcCCc-e
Q 016446 78 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKHVQEIKISPGI-M 154 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~t--l~~~~V~~vafS~g~-~ 154 (389)
||+|+.....+ +.++..+-..|+.+||| |+....+++|.|++|||||..-+++-.. .|+-.|.+|+++|.+ .
T Consensus 162 iKyWqpnmnnV----k~~~ahh~eaIRdlafS-pnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgL 236 (464)
T KOG0284|consen 162 IKYWQPNMNNV----KIIQAHHAEAIRDLAFS-PNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGL 236 (464)
T ss_pred EEecccchhhh----HHhhHhhhhhhheeccC-CCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccce
Confidence 66666544332 12221222457789999 6777889999999999999877775444 456689999999844 5
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEE
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 234 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv 234 (389)
+|++ +.|.+|||||.++|+||.+|-+|.+.|..|.|+ +.+..|+++|.|+.+|++|+++-+-++++++|.+.|+++
T Consensus 237 iasg---skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~ 312 (464)
T KOG0284|consen 237 IASG---SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL 312 (464)
T ss_pred eEEc---cCCceeEeecCCCcchhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee
Confidence 5443 556799999999999999999999999999998 677899999999999999999888899999999999999
Q ss_pred EEcC-CCcEEEEEc-CCeEEEEeCC-CcEEEEec-cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEE
Q 016446 235 IFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 310 (389)
Q Consensus 235 ~fsp-dg~~laS~s-D~tIklWd~~-G~~l~tl~-gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIkl 310 (389)
+++| .-.+|++++ ||.|..|.+. -+.+-.++ +|... ||++++.|=|.+||+||. |.++|.
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~-----iwsl~~hPlGhil~tgsn-----------d~t~rf 376 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGE-----IWSLAYHPLGHILATGSN-----------DRTVRF 376 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccccCCCcccccc-----eeeeeccccceeEeecCC-----------Ccceee
Confidence 9999 455677777 9999999997 44444443 55543 899999999999999865 589999
Q ss_pred Ee
Q 016446 311 SS 312 (389)
Q Consensus 311 Wd 312 (389)
|.
T Consensus 377 w~ 378 (464)
T KOG0284|consen 377 WT 378 (464)
T ss_pred ec
Confidence 96
No 53
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.7e-32 Score=253.01 Aligned_cols=279 Identities=13% Similarity=0.150 Sum_probs=231.4
Q ss_pred eeecCCcceEEEEEEee---CCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCe
Q 016446 38 FLNVSPDEVIRSLFYNK---NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 38 tl~~~~~~~v~sv~~sp---dg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~ 114 (389)
+-.|| ..+|-.++||| +|=.|||++.|+.-= |+.=.+|+.+. -|. .+.+.+++.... .|..
T Consensus 9 ~c~gh-trpvvdl~~s~itp~g~flisa~kd~~pm----------lr~g~tgdwig---tfe-ghkgavw~~~l~-~na~ 72 (334)
T KOG0278|consen 9 TCHGH-TRPVVDLAFSPITPDGYFLISASKDGKPM----------LRNGDTGDWIG---TFE-GHKGAVWSATLN-KNAT 72 (334)
T ss_pred EEcCC-CcceeEEeccCCCCCceEEEEeccCCCch----------hccCCCCCcEE---eee-ccCcceeeeecC-chhh
Confidence 33555 58999999985 789999987654321 22224555522 122 466777787776 7888
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe-EEEEEeecCCceeEE
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT-VLKVFYHLLHRNKKV 191 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~-~l~tl~~~~~~~~~v 191 (389)
.-||++.|=|.||||.-+|..+++|. .+-|.+|||+ |...|+++ +.++-+|++|++.-+ ..+.+.+|.+.++.|
T Consensus 73 ~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltg---g~ekllrvfdln~p~App~E~~ghtg~Ir~v 149 (334)
T KOG0278|consen 73 RAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTG---GQEKLLRVFDLNRPKAPPKEISGHTGGIRTV 149 (334)
T ss_pred hhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhcc---chHHHhhhhhccCCCCCchhhcCCCCcceeE
Confidence 88999999999999999999999997 5789999999 88888875 566899999987533 567888999999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCC
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLW 270 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~ 270 (389)
.|. ..+..|+++.+|+||||||.+||..+++|.-. ..|.++-.++||++|..+.-++|+.||.. =++|+..+ .|
T Consensus 150 ~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k---~P 224 (334)
T KOG0278|consen 150 LWC-HEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK---MP 224 (334)
T ss_pred EEe-ccCceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEecCceeEEeccccccceeecc---Cc
Confidence 997 56788999999999999999999999998743 47999999999999988888899999996 66776664 23
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe-cCCCCCCCcccccCCCCCCCccccccc
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
|.|.+...+|+-.+++.|++ |..++-+|..||+.+... +||-
T Consensus 225 ---~nV~SASL~P~k~~fVaGge-----------d~~~~kfDy~TgeEi~~~nkgh~----------------------- 267 (334)
T KOG0278|consen 225 ---CNVESASLHPKKEFFVAGGE-----------DFKVYKFDYNTGEEIGSYNKGHF----------------------- 267 (334)
T ss_pred ---cccccccccCCCceEEecCc-----------ceEEEEEeccCCceeeecccCCC-----------------------
Confidence 56899999999999998754 699999999999999885 8887
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+|.+|.|||||...||||+|||||||+
T Consensus 268 -----------gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 268 -----------GPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred -----------CceEEEEECCCCceeeccCCCceEEEEE
Confidence 5999999999999999999999999997
No 54
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=5.9e-30 Score=266.35 Aligned_cols=261 Identities=12% Similarity=0.102 Sum_probs=198.7
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE----------eccCCCCCcceeEeeecccC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY----------IRRGKPDSGFALFESESLKW 102 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~----------i~~g~~~~~~~l~~~~~~~~ 102 (389)
|+..+.=.-+ +-|+...+++|+..++++ +.+ ..+..|+ -..|+......++. .|.+.
T Consensus 11 g~~~k~~~~~--~~i~~~~~~~d~~~~~~~----n~~------~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~ 77 (493)
T PTZ00421 11 GVPARPDRHF--LNVTPSTALWDCSNTIAC----NDR------FIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGP 77 (493)
T ss_pred cccCCcccce--eccccccccCCCCCcEeE----CCc------eEEEEEecCCceEEeeccccccCCCCCceEe-CCCCC
Confidence 5544432222 456777788887777773 355 3333343 23454422222332 46667
Q ss_pred ceeEEEecC-CCeEEEEecCCCeEEEEeCCCC-------eEEEEec--CCcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 103 PGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNY-------TMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 103 ~~~v~Fs~p-dG~~Las~s~D~tiklWdl~~g-------~~l~tl~--~~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
+.+|+|+ | |+++||+||.|++|||||+.++ +++.++. ...|.+|+|+| +.+||++ +.|++|+||
T Consensus 78 V~~v~fs-P~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg---s~DgtVrIW 153 (493)
T PTZ00421 78 IIDVAFN-PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA---GADMVVNVW 153 (493)
T ss_pred EEEEEEc-CCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE---eCCCEEEEE
Confidence 8899998 6 8999999999999999999765 2455664 46899999996 3578776 456899999
Q ss_pred EcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCc-eEEEEEcCCCcEEEEE---
Q 016446 171 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT-PSAFIFLYENQLFLTF--- 246 (389)
Q Consensus 171 d~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~-v~sv~fspdg~~laS~--- 246 (389)
|+++|+++.++.+|...+.+++|+ |++..|++++.|++|||||+++++++.++.+|... +..+.|.|++.+++++
T Consensus 154 Dl~tg~~~~~l~~h~~~V~sla~s-pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s 232 (493)
T PTZ00421 154 DVERGKAVEVIKCHSDQITSLEWN-LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCS 232 (493)
T ss_pred ECCCCeEEEEEcCCCCceEEEEEE-CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecC
Confidence 999999999999999999999998 78889999999999999999999999999999865 4467899988777764
Q ss_pred -c-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 247 -R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 247 -s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
+ |++|+|||++ .+.+.+...|... .+....|+||+++|++++.. |++||+||+.+++++..+
T Consensus 233 ~s~Dr~VklWDlr~~~~p~~~~~~d~~~----~~~~~~~d~d~~~L~lggkg----------Dg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 233 KSQQRQIMLWDTRKMASPYSTVDLDQSS----ALFIPFFDEDTNLLYIGSKG----------EGNIRCFELMNERLTFCS 298 (493)
T ss_pred CCCCCeEEEEeCCCCCCceeEeccCCCC----ceEEEEEcCCCCEEEEEEeC----------CCeEEEEEeeCCceEEEe
Confidence 3 7999999995 4566666544432 25678899999999998742 599999999999988776
Q ss_pred cCC
Q 016446 323 NAT 325 (389)
Q Consensus 323 ~gH 325 (389)
...
T Consensus 299 ~~~ 301 (493)
T PTZ00421 299 SYS 301 (493)
T ss_pred ecc
Confidence 553
No 55
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.6e-30 Score=269.82 Aligned_cols=287 Identities=12% Similarity=0.148 Sum_probs=236.4
Q ss_pred ccccEEEEEeeccEEEEEe-cCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 2 KRTKVIEIVAARDIVFALA-HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 2 ~~~~v~~i~~~~~~~a~~~-~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
-|+.|+.+-++.+-++.+| -.+.+++|++.|++|++|+.- +.+-+..|-|-+.++++ |... ..+-+
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~---~y~l~~~Fvpgd~~Iv~----G~k~------Gel~v 438 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC---GYILASKFVPGDRYIVL----GTKN------GELQV 438 (888)
T ss_pred chhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc---ccEEEEEecCCCceEEE----eccC------CceEE
Confidence 3889999999944444443 378999999999999999984 58899999999999988 5555 56667
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEe
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFN 159 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~ 159 (389)
.|+....+..+.+ .|-+.+++++-+ ||++..++||.|+|||+||.+ +.++ ||.+-
T Consensus 439 fdlaS~~l~Eti~----AHdgaIWsi~~~-pD~~g~vT~saDktVkfWdf~---------------l~~~~~gt~~---- 494 (888)
T KOG0306|consen 439 FDLASASLVETIR----AHDGAIWSISLS-PDNKGFVTGSADKTVKFWDFK---------------LVVSVPGTQK---- 494 (888)
T ss_pred EEeehhhhhhhhh----ccccceeeeeec-CCCCceEEecCCcEEEEEeEE---------------EEeccCcccc----
Confidence 8887777643333 255677899998 999999999999999999961 2223 33210
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE 239 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd 239 (389)
+-++| . .-++|+ ....+.+|.++ ||+.+|+++=-|.|+|++-+.+-+..-.|-||.-+|.++..|||
T Consensus 495 -----k~lsl---~---~~rtLe-l~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D 561 (888)
T KOG0306|consen 495 -----KVLSL---K---HTRTLE-LEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD 561 (888)
T ss_pred -----eeeee---c---cceEEe-ccccEEEEEEc-CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC
Confidence 11111 1 112232 22678888888 67777777779999999999999998899999999999999999
Q ss_pred CcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 240 NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 240 g~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
+++++|+| |++||+|-++ |+|-+.|-+|++. |++|.|-|+-+...+++.| +.||=||-..=+
T Consensus 562 SklivTgSADKnVKiWGLdFGDCHKS~fAHdDS-----vm~V~F~P~~~~FFt~gKD-----------~kvKqWDg~kFe 625 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS-----VMSVQFLPKTHLFFTCGKD-----------GKVKQWDGEKFE 625 (888)
T ss_pred cCeEEeccCCCceEEeccccchhhhhhhcccCc-----eeEEEEcccceeEEEecCc-----------ceEEeechhhhh
Confidence 99999999 9999999999 9999999999987 8999999999999998775 899999987788
Q ss_pred EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 318 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 318 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
++++|.||. ..||++|-+|+|.+++|+|.|.+||+|.
T Consensus 626 ~iq~L~~H~----------------------------------~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 626 EIQKLDGHH----------------------------------SEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred hheeeccch----------------------------------heeeeeEEcCCCCeEEeccCCceeEeee
Confidence 999999998 5899999999999999999999999995
No 56
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=4.3e-31 Score=248.33 Aligned_cols=292 Identities=15% Similarity=0.192 Sum_probs=227.3
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEE
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 118 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las 118 (389)
|+||. -++.-|-||.+|+.|.|++ .| ..+.+|+-..|+.+.+ . ..|.+.++++..+ -+-+.|++
T Consensus 6 l~GHE-RplTqiKyN~eGDLlFsca----KD------~~~~vw~s~nGerlGt--y--~GHtGavW~~Did-~~s~~liT 69 (327)
T KOG0643|consen 6 LQGHE-RPLTQIKYNREGDLLFSCA----KD------STPTVWYSLNGERLGT--Y--DGHTGAVWCCDID-WDSKHLIT 69 (327)
T ss_pred cccCc-cccceEEecCCCcEEEEec----CC------CCceEEEecCCceeee--e--cCCCceEEEEEec-CCcceeee
Confidence 67764 8999999999999999964 56 7888999878875221 1 4577788889887 78899999
Q ss_pred ecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecC--CCCeeEEEEEcC-------CCeEEEEEeecCCc
Q 016446 119 SAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRS--SSHVPLKILSIE-------DGTVLKVFYHLLHR 187 (389)
Q Consensus 119 ~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~--s~d~tiklWd~~-------tG~~l~tl~~~~~~ 187 (389)
||.|.++||||+++|+++.+++ ...|+.|.|+ +|.+++.+... +.-+.|-+.|++ .-+++..+..+...
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK 149 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc
Confidence 9999999999999999999998 6789999999 45555444322 223478899988 45567777766666
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe
Q 016446 188 NKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg-~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl 264 (389)
+..+-+. |-++.|++|.+||.|.+||+++| +.++.-+.|...|+.+.|+||..+++++| |.|.||||+. -++++|+
T Consensus 150 it~a~Wg-~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 150 ITSALWG-PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeeeec-ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 7777776 67999999999999999999998 55667788999999999999999999999 9999999997 8999999
Q ss_pred ccCcCCcCCCCeeEEEECCCCCEEEEEecC-CCcccccCCCCC--eEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCC
Q 016446 265 EDHLLWHPDCNTNNIYITSDQDLIISYCKA-EPEDQWMEGSAG--SINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 341 (389)
Q Consensus 265 ~gh~~~~~~~~v~sv~fSpdG~~laS~s~D-~~~~~~~~s~D~--tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~ 341 (389)
.--. | |+++||+|--..++-|+.. +.+..-+..+.| -.|.+++-..+.+..++||=
T Consensus 229 ~te~-P-----vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF--------------- 287 (327)
T KOG0643|consen 229 TTER-P-----VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF--------------- 287 (327)
T ss_pred eecc-c-----ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc---------------
Confidence 8543 3 8999999988877776532 100001111111 12333333344455555554
Q ss_pred CccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 342 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
.+|++|||+|||+..+||++||.|||-
T Consensus 288 -------------------GPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 288 -------------------GPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred -------------------cCcceeEECCCCcccccCCCCceEEEE
Confidence 699999999999999999999999983
No 57
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.98 E-value=1.2e-31 Score=263.60 Aligned_cols=286 Identities=15% Similarity=0.226 Sum_probs=234.1
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 116 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L 116 (389)
..+..| ...|+.|-|-|+..+|++ |+.| +.|++|++.-+++.....|- +..+.+.+++|+ ++++.+
T Consensus 169 ~~ld~h-~gev~~v~~l~~sdtlat----gg~D------r~Ik~W~v~~~k~~~~~tLa--Gs~g~it~~d~d-~~~~~~ 234 (459)
T KOG0288|consen 169 FVLDAH-EGEVHDVEFLRNSDTLAT----GGSD------RIIKLWNVLGEKSELISTLA--GSLGNITSIDFD-SDNKHV 234 (459)
T ss_pred hhhhcc-ccccceeEEccCcchhhh----cchh------hhhhhhhcccchhhhhhhhh--ccCCCcceeeec-CCCceE
Confidence 345555 478999999999999999 7788 99999999877753333343 355667889998 788998
Q ss_pred EEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEE
Q 016446 117 TYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 193 (389)
Q Consensus 117 as~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f 193 (389)
.+++.|+++++|++.+++++.+|. .+.|.++.|.- ...+++ ++.|+|||+||++.+.|.++.- ....++.|..
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs---gs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~ 310 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS---GSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVC 310 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee---ccccchhhhhhhhhhheecccc-ccccccceEe
Confidence 889999999999999999887775 56899999994 333443 4778999999999999999875 2355667766
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCc
Q 016446 194 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH 271 (389)
Q Consensus 194 ~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~ 271 (389)
. +..++++-.|++||.||.+++.++...+.|. .|.++..+++|.-|.|++ |.++++-|+. -+...++..-...
T Consensus 311 ~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k- 385 (459)
T KOG0288|consen 311 S---ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK- 385 (459)
T ss_pred c---ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc-
Confidence 4 3455666799999999999999999988887 999999999999999999 9999999998 4566666643221
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccc
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 351 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (389)
..+.++.+.|||||.|+|.||.| |.|+||++.+|+|...|...+.+
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~d-----------gsv~iW~v~tgKlE~~l~~s~s~----------------------- 431 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSAD-----------GSVYIWSVFTGKLEKVLSLSTSN----------------------- 431 (459)
T ss_pred cccccceeEECCCCceeeeccCC-----------CcEEEEEccCceEEEEeccCCCC-----------------------
Confidence 11225789999999999998765 99999999999999999876521
Q ss_pred eecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 352 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 352 ~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|++++|+|-|..|++++.++.+.||.
T Consensus 432 ---------~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 432 ---------AAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ---------cceEEEEEcCCCchhhcccCCcceEecC
Confidence 2799999999999999999999999995
No 58
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=4.6e-29 Score=251.10 Aligned_cols=236 Identities=13% Similarity=0.184 Sum_probs=185.0
Q ss_pred eccEEEEEecCceEEEEeccc-ceeee-eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe--ccCC
Q 016446 12 ARDIVFALAHSGVCAAFSRET-NRRIC-FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI--RRGK 87 (389)
Q Consensus 12 ~~~~~a~~~~~gtiklW~~~t-g~~l~-tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i--~~g~ 87 (389)
+|.++|++..+|.||+|+..+ ...|+ +++.- +.+|..|.|++|++.|+.+.. |..+| ..+.+||- ..|+
T Consensus 70 sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~-aG~I~Di~Wd~ds~RI~avGE-Grerf-----g~~F~~DSG~SvGe 142 (603)
T KOG0318|consen 70 SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVL-AGPIKDISWDFDSKRIAAVGE-GRERF-----GHVFLWDSGNSVGE 142 (603)
T ss_pred CceEEeecCCcCcEEEEeccCcceeeeeeeeec-ccccccceeCCCCcEEEEEec-Cccce-----eEEEEecCCCccce
Confidence 399999999999999999743 34444 45554 579999999999999887543 44444 34444543 1121
Q ss_pred C-------------------------CCcceeE-------e---eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC
Q 016446 88 P-------------------------DSGFALF-------E---SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 132 (389)
Q Consensus 88 ~-------------------------~~~~~l~-------~---~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~ 132 (389)
+ ++....| . .+|...+.+|.|| |||...||++.||+|.++|=++
T Consensus 143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC-CCCCeEEEecCCccEEEEcCCC
Confidence 1 1111122 1 2255556789998 9999999999999999999999
Q ss_pred CeEEEEec-----CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce--eEEEEEecCCCeEEEE
Q 016446 133 YTMLYSIS-----DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLVK 204 (389)
Q Consensus 133 g~~l~tl~-----~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~--~~v~f~~~~~~~l~~~ 204 (389)
|+.+..|. .+.|.++++| |++++++. +.|+|+||||+.++++++++.-- ..+ .-|-..-+ .+.|++-
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~---SaDkt~KIWdVs~~slv~t~~~~-~~v~dqqvG~lWq-kd~lItV 296 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTV---SADKTIKIWDVSTNSLVSTWPMG-STVEDQQVGCLWQ-KDHLITV 296 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECCCCceEEEe---cCCceEEEEEeeccceEEEeecC-CchhceEEEEEEe-CCeEEEE
Confidence 99998885 3589999999 68899876 56799999999999999999832 222 33333323 7889999
Q ss_pred eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcE
Q 016446 205 QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL 260 (389)
Q Consensus 205 s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~ 260 (389)
|.+|+|.+.|...++.++++.||+..|++++.+||+++|.|++ ||.|--|+.. |..
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 9999999999999999999999999999999999999999999 9999999975 653
No 59
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.1e-29 Score=267.23 Aligned_cols=228 Identities=11% Similarity=0.092 Sum_probs=184.3
Q ss_pred EecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCe--------EEEEEeecC
Q 016446 118 YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGT--------VLKVFYHLL 185 (389)
Q Consensus 118 s~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~--------~l~tl~~~~ 185 (389)
.|+.++.|+||++....++..+. ...|.+|+|+| +.+||++ +.|++|||||+.++. ++.++.+|.
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASg---S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASG---SEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEE---eCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 36789999999987777777775 46899999995 5788876 456899999998752 455788999
Q ss_pred CceeEEEEEecCCCeE-EEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEE
Q 016446 186 HRNKKVDFIEQFNEKL-LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 262 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l-~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~ 262 (389)
..|..|+|+ |++..+ ++++.|++|+|||+++++.+..+. |...|.+++|+|+|++|++++ |++|+|||++ |+++.
T Consensus 126 ~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 126 KKISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred CcEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 999999998 666655 568899999999999999877775 567899999999999999998 9999999997 99999
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEecCCCCCCCcccccCCCCCC
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTG 341 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~ 341 (389)
++.+|.+......++...|+||+++|+|++.| ..++++|+|||+.+ ++++.++..+...
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d-------~~~~R~VkLWDlr~~~~pl~~~~ld~~~------------- 263 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFS-------KNNMREMKLWDLKNTTSALVTMSIDNAS------------- 263 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcC-------CCCccEEEEEECCCCCCceEEEEecCCc-------------
Confidence 99999875321224556688999999998876 23456899999984 7788776544310
Q ss_pred CccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 342 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..+....++++|.++++|+.|++||+|+.
T Consensus 264 -------------------~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 264 -------------------APLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred -------------------cceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 35556666778999999999999999973
No 60
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=2.7e-28 Score=230.57 Aligned_cols=258 Identities=14% Similarity=0.137 Sum_probs=195.0
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE-EEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CC
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PG 152 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L-as~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g 152 (389)
..+++||+.++++. . .+. ....+..++|+ |||+.| ++++.|++|++||+.+++.+..+. ...+..++|+ +|
T Consensus 11 ~~v~~~d~~t~~~~--~-~~~--~~~~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 84 (300)
T TIGR03866 11 NTISVIDTATLEVT--R-TFP--VGQRPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG 84 (300)
T ss_pred CEEEEEECCCCceE--E-EEE--CCCCCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC
Confidence 78899999888752 1 222 22335679998 899876 677889999999999999887776 3457789999 57
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCC-CcEEEEECCCCeEEEEcccCCCce
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN-ENLQILDVRNAELMEVSRTEFMTP 231 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D-~tIklWd~~tg~~~~~l~gh~~~v 231 (389)
+.+++++ +.|++|++||+.+++++..++.+ .....++|+ |++..+++++.+ ..+.+||.++++++..+..+ ..+
T Consensus 85 ~~l~~~~--~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~ 159 (300)
T TIGR03866 85 KILYIAN--EDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVS-PDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRP 159 (300)
T ss_pred CEEEEEc--CCCCeEEEEECCCCeEEeEeeCC-CCcceEEEC-CCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCc
Confidence 7776653 44689999999999999888732 345788997 778888888765 46788899999887654332 356
Q ss_pred EEEEEcCCCcEEE-EEc-CCeEEEEeCC-CcEEEEeccCcCCcC-CC-CeeEEEECCCCCEEEEEecCCCcccccCCCCC
Q 016446 232 SAFIFLYENQLFL-TFR-NRTVAVWNFR-GELVTSFEDHLLWHP-DC-NTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 232 ~sv~fspdg~~la-S~s-D~tIklWd~~-G~~l~tl~gh~~~~~-~~-~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~ 306 (389)
..++|+|||++|+ ++. |++|++||++ +++++++..+..... .. ....++|+|||++++.+..+ ++
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~----------~~ 229 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP----------AN 229 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC----------CC
Confidence 7899999999875 555 9999999997 888887764321100 00 12468999999987665432 46
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec-CCCcEE
Q 016446 307 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVH 385 (389)
Q Consensus 307 tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs-~D~tIr 385 (389)
+|.+||+++++.+..+..+ ..+++++|+|||+.|++++ .+++|+
T Consensus 230 ~i~v~d~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLVG-----------------------------------QRVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred eEEEEECCCCcEEEEEEeC-----------------------------------CCcceEEECCCCCEEEEEcCCCCeEE
Confidence 8999999999988776432 3688999999999999874 699999
Q ss_pred EccC
Q 016446 386 VWSN 389 (389)
Q Consensus 386 lW~~ 389 (389)
+||.
T Consensus 275 v~d~ 278 (300)
T TIGR03866 275 VIDV 278 (300)
T ss_pred EEEC
Confidence 9983
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.9e-31 Score=252.69 Aligned_cols=237 Identities=16% Similarity=0.249 Sum_probs=201.7
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec----------CCcEEEEEEc-CCceEEEEecCCCCeeE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----------DKHVQEIKIS-PGIMLLIFNRSSSHVPL 167 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~----------~~~V~~vafS-~g~~la~~~~~s~d~ti 167 (389)
...|+.+..|| |||++|+|||-||-|.+||..+|++...|+ ...|.++.|| |..+||++ +.|+.|
T Consensus 212 ~KSh~EcA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG---sqDGkI 287 (508)
T KOG0275|consen 212 QKSHVECARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG---SQDGKI 287 (508)
T ss_pred cccchhheeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc---CcCCcE
Confidence 44577889998 999999999999999999999999765553 3689999999 99999876 566899
Q ss_pred EEEEcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE
Q 016446 168 KILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 168 klWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~ 246 (389)
|+|.++||+||+.|. .|+..+.++.|+ .|+..+++++.|.|+||--+++|+|++.++||...|+.+.|.+||..++|+
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999999999999998 899999999998 789999999999999999999999999999999999999999999999999
Q ss_pred c-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCC--CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 247 R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 247 s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG--~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
+ |||||+|+.. ++|+.||+.-.. +..|++|-.-|.. +++++ -. .+||.|-+++ ||.++++
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~~---d~~vnsv~~~PKnpeh~iVC-Nr-----------sntv~imn~q-GQvVrsf 430 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLGT---DYPVNSVILLPKNPEHFIVC-NR-----------SNTVYIMNMQ-GQVVRSF 430 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCCC---cccceeEEEcCCCCceEEEE-cC-----------CCeEEEEecc-ceEEeee
Confidence 8 9999999996 999999984432 2238888887753 44443 33 3799999965 9999888
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
..-. |- . ..--+...||.|.++++.++|+.+...
T Consensus 431 sSGk---------RE--g--------------------GdFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 431 SSGK---------RE--G--------------------GDFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred ccCC---------cc--C--------------------CceEEEEecCCCcEEEEEccCcEEEEE
Confidence 5422 00 1 244578899999999999999987654
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.8e-29 Score=231.92 Aligned_cols=282 Identities=11% Similarity=0.167 Sum_probs=231.4
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCC
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 113 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG 113 (389)
+.++.|..++ ++|+.|.||-||++..+ .+.| ++++||+...|-++.+.. .+-.-+..++-+ .|.
T Consensus 8 kr~~~l~~~q-gaV~avryN~dGnY~lt----cGsd------rtvrLWNp~rg~liktYs----ghG~EVlD~~~s-~Dn 71 (307)
T KOG0316|consen 8 KRLSILDCAQ-GAVRAVRYNVDGNYCLT----CGSD------RTVRLWNPLRGALIKTYS----GHGHEVLDAALS-SDN 71 (307)
T ss_pred hhceeecccc-cceEEEEEccCCCEEEE----cCCC------ceEEeecccccceeeeec----CCCceeeecccc-ccc
Confidence 4567788875 99999999999999888 4567 899999999998733222 222224567776 577
Q ss_pred eEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC--CeEEEEEeecCCce
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED--GTVLKVFYHLLHRN 188 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t--G~~l~tl~~~~~~~ 188 (389)
..+|||+.|+.|.+||+++|+.++.+. ...|+.|+|+ ....++++ +.|.+||+||-+. -+.++.|......+
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sg---sfD~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASG---SFDSSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEec---cccceeEEEEcccCCCCccchhhhhcCce
Confidence 889999999999999999999998886 4689999999 56677654 6778999999764 46778887777888
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEecc
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 266 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~g 266 (389)
.+|... +.-|++||.|||+|.+|++.|++..-.-|| +|+++.|||||+-.+.++ |+|++|-|-+ |++|+..+|
T Consensus 149 ~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 149 SSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred eEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 888876 567899999999999999999987766666 799999999999999999 9999999997 999999999
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccc
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
|.+.. +-....|+..-...+|||+ ||.|.+||+..+..+.+|+.|..
T Consensus 224 hkn~e---ykldc~l~qsdthV~sgSE-----------DG~Vy~wdLvd~~~~sk~~~~~~------------------- 270 (307)
T KOG0316|consen 224 HKNME---YKLDCCLNQSDTHVFSGSE-----------DGKVYFWDLVDETQISKLSVVST------------------- 270 (307)
T ss_pred cccce---eeeeeeecccceeEEeccC-----------CceEEEEEeccceeeeeeccCCc-------------------
Confidence 99852 2356678888888888865 59999999999999999998872
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
--|.+|+|.|--..+.++. ++.+.+|
T Consensus 271 --------------v~v~dl~~hp~~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 271 --------------VIVTDLSCHPTMDDFITAT-GHGDLFW 296 (307)
T ss_pred --------------eeEEeeecccCccceeEec-CCceece
Confidence 1389999999888887776 3334455
No 63
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.6e-29 Score=260.73 Aligned_cols=277 Identities=15% Similarity=0.217 Sum_probs=225.6
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCcee-EEEecCC
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF-VEFDDVN 112 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~-v~Fs~pd 112 (389)
++-|.+.||. .-|+.|++.+.. .+++ +++| +++++|.=..++..... .| .++.+++-. ++|.+.|
T Consensus 5 ~ls~~l~gH~-~DVr~v~~~~~~-~i~s----~sRd------~t~~vw~~~~~~~l~~~-~~-~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 5 KLSHELEGHK-SDVRAVAVTDGV-CIIS----GSRD------GTVKVWAKKGKQYLETH-AF-EGPKGFIANSICYAESD 70 (745)
T ss_pred eeEEEeccCc-cchheeEecCCe-EEee----cCCC------CceeeeeccCcccccce-ec-ccCcceeeccceecccc
Confidence 5667888875 778999987755 5677 5678 88899984444432211 12 134444333 6665335
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCcee
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 189 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~ 189 (389)
+-.|..|+.|.+|-+|.+.+..++++|.+ ..|.++..- ++. ++++ |-|.|+|+|-+ |+|..++++|+..||
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSg---SWD~TakvW~~--~~l~~~l~gH~asVW 144 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISG---SWDSTAKVWRI--GELVYSLQGHTASVW 144 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEec---ccccceEEecc--hhhhcccCCcchhee
Confidence 55688999999999999999999999975 579998877 555 6565 55689999984 899999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCc
Q 016446 190 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHL 268 (389)
Q Consensus 190 ~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~ 268 (389)
+|++. | .+++++||.|++||||.- |+++++|.||++.|+.+++.|++.+| |++ ||.||+|+++|+++.++.||+
T Consensus 145 Av~~l-~-e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~fl-ScsNDg~Ir~w~~~ge~l~~~~ght 219 (745)
T KOG0301|consen 145 AVASL-P-ENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFL-SCSNDGSIRLWDLDGEVLLEMHGHT 219 (745)
T ss_pred eeeec-C-CCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeE-eecCCceEEEEeccCceeeeeeccc
Confidence 99997 4 449999999999999985 99999999999999999999998755 565 999999999999999999999
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccc
Q 016446 269 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 348 (389)
Q Consensus 269 ~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 348 (389)
.. |.++...++++.++|+++ |+|+|||+. ++|.+.+.=.+
T Consensus 220 n~-----vYsis~~~~~~~Ivs~gE-----------DrtlriW~~--~e~~q~I~lPt---------------------- 259 (745)
T KOG0301|consen 220 NF-----VYSISMALSDGLIVSTGE-----------DRTLRIWKK--DECVQVITLPT---------------------- 259 (745)
T ss_pred eE-----EEEEEecCCCCeEEEecC-----------CceEEEeec--CceEEEEecCc----------------------
Confidence 87 799998899999999865 599999996 49999987433
Q ss_pred ccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 349 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 349 ~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
-.||++.+=++|. |++|+.||.||+|-
T Consensus 260 ------------tsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 260 ------------TSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred ------------cceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 4799999999998 67888899999984
No 64
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=246.33 Aligned_cols=274 Identities=11% Similarity=0.121 Sum_probs=223.5
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccc---eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETN---RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg---~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
..|+-+.|+ |.++|+++.|.|.-+|...-- ++.+|+-+|+ ..|--|.||||..+|+++ +.+ ..+
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~-~~V~yi~wSPDdryLlaC----g~~------e~~ 293 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS-QPVSYIMWSPDDRYLLAC----GFD------EVL 293 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc-CceEEEEECCCCCeEEec----Cch------Hhe
Confidence 468889999 999999999999999996543 3588999986 999999999999999995 455 568
Q ss_pred eEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCC---cEEEEEEc-CCce
Q 016446 79 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---HVQEIKIS-PGIM 154 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~---~V~~vafS-~g~~ 154 (389)
++||+.+|++ ..++.+.+--.+.++++. |||..+++||.|++|--||+ +|+.+....+- .|+++|++ ||.+
T Consensus 294 ~lwDv~tgd~---~~~y~~~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 294 SLWDVDTGDL---RHLYPSGLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred eeccCCcchh---hhhcccCcCCCcceeEEc-cCCceeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcCCCcE
Confidence 9999999997 334444433456779997 99999999999999999998 88888777753 59999999 7988
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceE--
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS-- 232 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~-- 232 (389)
+++.. .|..|++.+.++-.+....+.+ +++.+...+ -++.+.+..=.+++|+|||++....++...||...-.
T Consensus 369 vl~v~---~d~~i~l~~~e~~~dr~lise~-~~its~~iS-~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 369 VLLVT---VDKKIRLYNREARVDRGLISEE-QPITSFSIS-KDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEe---cccceeeechhhhhhhcccccc-CceeEEEEc-CCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEE
Confidence 87764 5689999999987777655543 778888877 4455555566999999999998888888888876432
Q ss_pred EEEEcC-CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcccccCCCCCeE
Q 016446 233 AFIFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 233 sv~fsp-dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
.-+|-. +..++|||| |+.|.||+.. |+++.+|.||..- |+.|+++| |-.++||||. ||||
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~-----vNcVswNP~~p~m~ASasD-----------DgtI 507 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT-----VNCVSWNPADPEMFASASD-----------DGTI 507 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce-----eeEEecCCCCHHHhhccCC-----------CCeE
Confidence 224654 558899999 9999999996 9999999999865 89999999 5677888765 5999
Q ss_pred EEEeCC
Q 016446 309 NVSSIL 314 (389)
Q Consensus 309 klWd~~ 314 (389)
|||-..
T Consensus 508 RIWg~~ 513 (519)
T KOG0293|consen 508 RIWGPS 513 (519)
T ss_pred EEecCC
Confidence 999753
No 65
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.6e-28 Score=221.71 Aligned_cols=297 Identities=11% Similarity=0.177 Sum_probs=232.4
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee-EeEeccCCCCCc---ceeEe--eecccCceeEE
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK-IEYIRRGKPDSG---FALFE--SESLKWPGFVE 107 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~-l~~i~~g~~~~~---~~l~~--~~~~~~~~~v~ 107 (389)
+++.+|.. +..|++|+|.|.|...|. |+.- .++++.+-. +-+++.+..-.. ..+|. ..+.+.++.++
T Consensus 24 ~~i~~l~d--sqairav~fhp~g~lyav----gsns-kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 24 EAINILED--SQAIRAVAFHPAGGLYAV----GSNS-KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred EEEEEecc--hhheeeEEecCCCceEEe----ccCC-ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence 45656664 468999999999998888 4444 344433311 223333332111 12555 44778899999
Q ss_pred EecCCCeEEEEecCCCeEEEEeCCCCeE-------EEEecCCcEEEEEEc--C---CceEEEEecCCCCeeEEEEEcCCC
Q 016446 108 FDDVNGKVLTYSAQDSIYKVFDLKNYTM-------LYSISDKHVQEIKIS--P---GIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 108 Fs~pdG~~Las~s~D~tiklWdl~~g~~-------l~tl~~~~V~~vafS--~---g~~la~~~~~s~d~tiklWd~~tG 175 (389)
+| |+|++||+||.|++||+--.+.-.| -+..|.+.|++++|- | |.+||++ +-.|..|.+=|-.+|
T Consensus 97 ws-~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~--gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 97 WS-PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA--GAGDCKIYITDCGRG 173 (350)
T ss_pred ec-CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec--CCCcceEEEeecCCC
Confidence 98 9999999999999999986654333 255567899999998 2 4455544 455799999999999
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc-------CCCceEEEEEcCCCcEEEEEc-
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-------EFMTPSAFIFLYENQLFLTFR- 247 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g-------h~~~v~sv~fspdg~~laS~s- 247 (389)
+.++.+.+|++++.++.-- .+-.+++||.|+|||.||++-..|+.++.. ....|.+|+..|.|++|+||-
T Consensus 174 ~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ 251 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA 251 (350)
T ss_pred CcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence 9999999999999988764 377888899999999999999999998743 235799999999999999998
Q ss_pred CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 248 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 248 D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
|....|+|+. |+.++.+-.|... |.+|.|||-..||.++|-| ..|||=|++ |.+.+.|.-
T Consensus 252 dssc~lydirg~r~iq~f~phsad-----ir~vrfsp~a~yllt~syd-----------~~ikltdlq-gdla~el~~-- 312 (350)
T KOG0641|consen 252 DSSCMLYDIRGGRMIQRFHPHSAD-----IRCVRFSPGAHYLLTCSYD-----------MKIKLTDLQ-GDLAHELPI-- 312 (350)
T ss_pred CCceEEEEeeCCceeeeeCCCccc-----eeEEEeCCCceEEEEeccc-----------ceEEEeecc-cchhhcCce--
Confidence 9999999998 8899999999875 8999999999999999875 799999975 665443321
Q ss_pred CCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 327 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
-.++||-+.+-.+.|.|..-..+|.|.|+|+.||-
T Consensus 313 ---------------------------~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 313 ---------------------------MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred ---------------------------EEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 12334446788899999999999999999999995
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.4e-29 Score=261.44 Aligned_cols=242 Identities=12% Similarity=0.164 Sum_probs=195.8
Q ss_pred ecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCC-----------------------------------e--------
Q 016446 98 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-----------------------------------T-------- 134 (389)
Q Consensus 98 ~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g-----------------------------------~-------- 134 (389)
.+-+.|++..|| +||+|||+|+.|+.||||.+... +
T Consensus 265 ah~gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 467789999998 99999999999999999997550 0
Q ss_pred ---E--------------EEEe--cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe
Q 016446 135 ---M--------------LYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 195 (389)
Q Consensus 135 ---~--------------l~tl--~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~ 195 (389)
+ +..+ |...|.++.+|.+++|+++ +.|+|||||++..-+||++|. |..-|.+|+|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS---SMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS---SMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCCeeEec---cccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 0 0111 2247999999988888875 788999999999999999998 678999999999
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc-EEEEeccCcC---C
Q 016446 196 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE-LVTSFEDHLL---W 270 (389)
Q Consensus 196 ~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~-~l~tl~gh~~---~ 270 (389)
.|+.++++||-|+.||||++...+......-| .-|++++|.|||+..+-|+ +|.+++++..|- +.....=|.. .
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 89999999999999999999888877765555 7899999999999999999 999999999864 4333321111 0
Q ss_pred cCCCCeeEEEECCCC--CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccc
Q 016446 271 HPDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 348 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG--~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 348 (389)
.....|..+.|.|-. +.||+ |+|.-|||.|..+-+++.+|+|+...
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVT------------SnDSrIRI~d~~~~~lv~KfKG~~n~-------------------- 546 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVT------------SNDSRIRIYDGRDKDLVHKFKGFRNT-------------------- 546 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEe------------cCCCceEEEeccchhhhhhhcccccC--------------------
Confidence 011137899998743 47776 34689999999888999999998731
Q ss_pred ccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 349 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 349 ~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..=.+..|++||+.|+|||+|.-|.||++
T Consensus 547 ------------~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 547 ------------SSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ------------CcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 23346799999999999999999999985
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.5e-29 Score=231.91 Aligned_cols=281 Identities=12% Similarity=0.145 Sum_probs=217.3
Q ss_pred EEEEEeeC-CCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeE
Q 016446 48 RSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIY 125 (389)
Q Consensus 48 ~sv~~spd-g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~ti 125 (389)
.+|-|||. -+.||.|-+ ..|.-.-...+.|-++..++- ...+. -+.....+.|++++.....++.++.||++
T Consensus 12 ysvqfSPf~~nrLavAt~---q~yGl~G~G~L~ile~~~~~g---i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATA---QHYGLAGNGRLFILEVTDPKG---IQECQSYDTEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred ceeEecccccchhheeeh---hhcccccCceEEEEecCCCCC---eEEEEeeecccceeEeeecCCCcceEEEEecCceE
Confidence 78999998 345555432 222222223444444432322 11121 11222234599997667788889999999
Q ss_pred EEEeCCC-CeEEEEec--CCcEEEEEEc--CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCe
Q 016446 126 KVFDLKN-YTMLYSIS--DKHVQEIKIS--PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 200 (389)
Q Consensus 126 klWdl~~-g~~l~tl~--~~~V~~vafS--~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~ 200 (389)
||||+.- ..++..++ ..+|.+|..+ .++.++++ |-|+|||||+..-++.++||++|...|..++|+|..+..
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nl 162 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS---SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNL 162 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheEEeccccccceeEEee---ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCe
Confidence 9999753 33777776 4689999999 47777666 556899999999999999999999999999999878899
Q ss_pred EEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEEc-CCCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCC
Q 016446 201 LLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCN 275 (389)
Q Consensus 201 l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fs-pdg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~ 275 (389)
+++.|.|+++||||++. |+.+. ++.|+..+.++.|+ .+-.+|+||+ |++||.||+. ...+..|.||+-.
T Consensus 163 fas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A----- 236 (311)
T KOG0277|consen 163 FASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA----- 236 (311)
T ss_pred EEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE-----
Confidence 99999999999999986 55554 88999999999998 4777889998 9999999996 6788999999987
Q ss_pred eeEEEECCC-CCEEEEEecCCCcccccCCCCCeEEEEeCCCC-eEEEEecCCCCCCCcccccCCCCCCCcccccccccee
Q 016446 276 TNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 353 (389)
Q Consensus 276 v~sv~fSpd-G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg-~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
|+.|.|||- -..|||+|-| =|+||||.+.+ -++.+..-|+
T Consensus 237 VRkvk~Sph~~~lLaSasYD-----------mT~riw~~~~~ds~~e~~~~Ht--------------------------- 278 (311)
T KOG0277|consen 237 VRKVKFSPHHASLLASASYD-----------MTVRIWDPERQDSAIETVDHHT--------------------------- 278 (311)
T ss_pred EEEEecCcchhhHhhhcccc-----------ceEEecccccchhhhhhhhccc---------------------------
Confidence 899999996 5678887765 89999998743 3566666666
Q ss_pred cccccccCCEEEEEECC-CCCEEEEecCCCcEEEcc
Q 016446 354 STVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 354 ~~~~~~~~~V~svafSp-dg~~LaSgs~D~tIrlW~ 388 (389)
+-|..+.||+ ++..+|+.+.|+++.+|+
T Consensus 279 -------EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 279 -------EFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred -------eEEeccccccccCceeeecccccceeeec
Confidence 6888999998 567899999999999997
No 68
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.6e-27 Score=249.30 Aligned_cols=265 Identities=12% Similarity=0.103 Sum_probs=195.9
Q ss_pred EEeeccEEEE------EecCceEEEEecccceeeeeeecCCcceEEEEEEeeC-CCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 9 IVAARDIVFA------LAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 9 i~~~~~~~a~------~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spd-g~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
|..+.+++|. +..++.++||+.....++..+.+|. ..|.+|+|+|+ ++.||+ ++.| ..++||
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~-~~V~~lafsP~~~~lLAS----gS~D------gtIrIW 102 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHT-SSILDLQFNPCFSEILAS----GSED------LTIRVW 102 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCC-CCEEEEEEcCCCCCEEEE----EeCC------CeEEEE
Confidence 3334666665 4457899999987788899999875 89999999997 789999 4577 889999
Q ss_pred EeccCCCC-C--cceeEe-eecccCceeEEEecCCCeE-EEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCce
Q 016446 82 YIRRGKPD-S--GFALFE-SESLKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIM 154 (389)
Q Consensus 82 ~i~~g~~~-~--~~~l~~-~~~~~~~~~v~Fs~pdG~~-Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~ 154 (389)
+++.+... . ...+.. ..|...+..|+|+ |+++. ||+++.|++|+|||+.+++.+..+. ...|.+++|+ +|.+
T Consensus 103 Di~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~l 181 (568)
T PTZ00420 103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNL 181 (568)
T ss_pred ECCCCCccccccccceEEeecCCCcEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCE
Confidence 99765321 0 001111 2344567889998 88875 6899999999999999999887775 5689999999 6888
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe----cCCCeEEEEeCC----CcEEEEECCC-CeEEEEc-
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE----QFNEKLLVKQEN----ENLQILDVRN-AELMEVS- 224 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~----~~~~~l~~~s~D----~tIklWd~~t-g~~~~~l- 224 (389)
|++++ .|++|+|||+++|+++.++.+|.+.+....+.. +++++|++++.| ++|+|||+++ ++++.+.
T Consensus 182 Lat~s---~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 182 LSGTC---VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EEEEe---cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence 87663 458999999999999999999987654433321 567889998766 4899999995 6676654
Q ss_pred -ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 225 -RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 225 -~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
..+...+..+.++++|.++++|+ |++||+|++. +. +..|.......+ +.+++|.|+--.=+.-|
T Consensus 259 ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p---~~g~~f~Pkr~~dv~~c 325 (568)
T PTZ00420 259 IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSP---FRSFGFLPKQICDVYKC 325 (568)
T ss_pred ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCC---ccceEEccccccCchhh
Confidence 33444555566678899999998 9999999997 54 333443222211 58999999755434433
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-28 Score=247.74 Aligned_cols=255 Identities=13% Similarity=0.117 Sum_probs=221.1
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEcCC
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISPG 152 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS~g 152 (389)
..++||+-.+|++ ..|+..+ ...+.+|.++ |+|++||.|-.+|+|.|||.++.+.+.++. ...|-+++.+ +
T Consensus 197 ~~vylW~~~s~~v---~~l~~~~-~~~vtSv~ws-~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~ 270 (484)
T KOG0305|consen 197 QSVYLWSASSGSV---TELCSFG-EELVTSVKWS-PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-S 270 (484)
T ss_pred ceEEEEecCCCce---EEeEecC-CCceEEEEEC-CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-C
Confidence 6899999999985 4465432 4667899998 999999999999999999999888776664 4579999998 3
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEE-EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCce
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP 231 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~t-l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v 231 (389)
..+.+ ++.|+.|..+|+...+.+.. +.+|.+.|-.+.++ +|+.++|+|+.|+.+.|||..+-+.+.++.+|..+|
T Consensus 271 ~~lss---Gsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV 346 (484)
T KOG0305|consen 271 SVLSS---GSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV 346 (484)
T ss_pred ceEEE---ecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeeccCCCccceEeccCCCccccEEEeccceee
Confidence 34434 45668999999999988877 88999999999998 789999999999999999999999999999999999
Q ss_pred EEEEEcC-CCcEEEEEc---CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCC
Q 016446 232 SAFIFLY-ENQLFLTFR---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 232 ~sv~fsp-dg~~laS~s---D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~ 306 (389)
.+++|+| ...+||+|+ |++||+||.. |+++....-.. .|.+|.|||..+-|+++-. -.++
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs------QVcsL~Wsk~~kEi~sthG---------~s~n 411 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS------QVCSLIWSKKYKELLSTHG---------YSEN 411 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC------ceeeEEEcCCCCEEEEecC---------CCCC
Confidence 9999999 667899983 9999999996 99988776433 2899999999988888653 3467
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 307 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 307 tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
-|.||+..+-+.+..|.||+ .+|..++.||||+++++|+.|+|+|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~----------------------------------~RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHT----------------------------------SRVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred cEEEEeccccceeeeecCCc----------------------------------ceeEEEEECCCCCEEEEecccCcEEe
Confidence 89999999999999999999 58999999999999999999999999
Q ss_pred ccC
Q 016446 387 WSN 389 (389)
Q Consensus 387 W~~ 389 (389)
|+.
T Consensus 458 w~~ 460 (484)
T KOG0305|consen 458 WNL 460 (484)
T ss_pred ccc
Confidence 973
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-27 Score=227.25 Aligned_cols=242 Identities=14% Similarity=0.202 Sum_probs=199.3
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
..+.|.+++|+ +||+.|+++++|.+++|+|..+|+++.++. ...|..+.|- +...+..+ +...|.|||+.++.+-
T Consensus 13 ~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~s-Stk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 13 TNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHS-STKEDDTIRYLSLHDN 90 (311)
T ss_pred CCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEc-cCCCCCceEEEEeecC
Confidence 45667899998 899999999999999999999999999997 4589999999 55444333 4567899999999999
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEE
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 254 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklW 254 (389)
+.++.|.||...|.++..+ |-++.++++|.|+||||||++..+|...+.-- ....+||.|+|-++|.+. -..|||+
T Consensus 91 kylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKLY 167 (311)
T ss_pred ceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEEE
Confidence 9999999999999999998 55799999999999999999999987765433 334589999999999998 5599999
Q ss_pred eCC---CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCc
Q 016446 255 NFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 331 (389)
Q Consensus 255 d~~---G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~ 331 (389)
|++ .....++.=... +.+..+.+.|||||++|+-+.. .+-+.|-|.-+|..+.++.+|...
T Consensus 168 D~Rs~dkgPF~tf~i~~~--~~~ew~~l~FS~dGK~iLlsT~-----------~s~~~~lDAf~G~~~~tfs~~~~~--- 231 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDN--DEAEWTDLEFSPDGKSILLSTN-----------ASFIYLLDAFDGTVKSTFSGYPNA--- 231 (311)
T ss_pred EecccCCCCceeEccCCC--CccceeeeEEcCCCCEEEEEeC-----------CCcEEEEEccCCcEeeeEeeccCC---
Confidence 984 345555542211 1123589999999999998654 378999999999999999999831
Q ss_pred ccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 332 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+ .-+ -+..|+|||+.+.+|+.||+|.+|+.
T Consensus 232 ---------~------------------~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 232 ---------G------------------NLP-LSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred ---------C------------------Ccc-eeEEECCCCcEEEEecCCCcEEEEEc
Confidence 0 012 46899999999999999999999973
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.6e-28 Score=237.13 Aligned_cols=231 Identities=14% Similarity=0.174 Sum_probs=190.9
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCce---EEEEecCCCCeeEEEEEc
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIM---LLIFNRSSSHVPLKILSI 172 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~---la~~~~~s~d~tiklWd~ 172 (389)
+-.|+.+|.-. ++.|.+|+.||++|+||+ .|++++++. .+.|.+++.- ++.. ++++ +.|+|++||-+
T Consensus 104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa---s~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSA---SMDQTLRLWKW 176 (423)
T ss_pred chhhhhhhccc---CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEe---cCCceEEEEEe
Confidence 33455666553 689999999999999997 788776664 5789887776 5443 6664 77899999999
Q ss_pred CCCeEE----EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC-------------------------CCeEEEE
Q 016446 173 EDGTVL----KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-------------------------NAELMEV 223 (389)
Q Consensus 173 ~tG~~l----~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~-------------------------tg~~~~~ 223 (389)
+.|+.. +.-.||-..|.+|... +++.+++++|.|.+|+||+.+ ++.++-+
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 887743 3345899999999987 778999999999999999932 1336778
Q ss_pred cccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 224 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 224 l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
+.||...|.+|.|++ ...+.|++ |.|||.||+. |.++-++.+... .++|..+|.-++||+||.|
T Consensus 256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks------l~~i~~~~~~~Ll~~gssd------- 321 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS------LNCISYSPLSKLLASGSSD------- 321 (423)
T ss_pred ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcc------eeEeecccccceeeecCCC-------
Confidence 999999999999999 44566777 9999999997 999999987654 5899999999999998765
Q ss_pred CCCCCeEEEEeCCCCe---EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-CEEEE
Q 016446 302 EGSAGSINVSSILTGK---CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYT 377 (389)
Q Consensus 302 ~s~D~tIklWd~~tg~---~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaS 377 (389)
.-|||||.++|. ..++|.||+ ++|.+|.+||.. ..|+|
T Consensus 322 ----r~irl~DPR~~~gs~v~~s~~gH~----------------------------------nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 322 ----RHIRLWDPRTGDGSVVSQSLIGHK----------------------------------NWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred ----CceeecCCCCCCCceeEEeeecch----------------------------------hhhhheecCCCCceEEEE
Confidence 899999998865 457899998 699999999976 57999
Q ss_pred ecCCCcEEEccC
Q 016446 378 GNRHGLVHVWSN 389 (389)
Q Consensus 378 gs~D~tIrlW~~ 389 (389)
||.|+++||||.
T Consensus 364 ~S~D~t~klWDv 375 (423)
T KOG0313|consen 364 GSYDNTVKLWDV 375 (423)
T ss_pred EecCCeEEEEEe
Confidence 999999999984
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.8e-28 Score=240.16 Aligned_cols=287 Identities=17% Similarity=0.205 Sum_probs=218.9
Q ss_pred EEEEecccceeeeeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCc
Q 016446 25 CAAFSRETNRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 103 (389)
Q Consensus 25 iklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~ 103 (389)
.+-|+..+--. +...| +.|.+|.|||.-. -+|.++ + -.+-|.+..+........=|. .-+
T Consensus 11 ~~~w~~~~~~~---~~ke~-~~vssl~fsp~~P~d~aVt~---S--------~rvqly~~~~~~~~k~~srFk----~~v 71 (487)
T KOG0310|consen 11 IRYWRQETFPP---VHKEH-NSVSSLCFSPKHPYDFAVTS---S--------VRVQLYSSVTRSVRKTFSRFK----DVV 71 (487)
T ss_pred chhhhhhcccc---ccccc-CcceeEecCCCCCCceEEec---c--------cEEEEEecchhhhhhhHHhhc----cce
Confidence 45576543222 22334 7899999999432 122221 1 233445544433321111222 224
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
.++.|- .||++||.|...|-|||+|.++-..++.+ |+.+|..+.|+| +.+++++ +++|+.+|+||+.++.....
T Consensus 72 ~s~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s--~sDd~v~k~~d~s~a~v~~~ 148 (487)
T KOG0310|consen 72 YSVDFR-SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS--GSDDKVVKYWDLSTAYVQAE 148 (487)
T ss_pred eEEEee-cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe--cCCCceEEEEEcCCcEEEEE
Confidence 679997 89999999999999999997664444555 467999999994 4444444 46689999999999998779
Q ss_pred EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC--
Q 016446 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-- 257 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg-~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-- 257 (389)
+.+|.+-|++.++++..+..+++||+||+||+||.++. +.+..+ .|..+|.+|.|.|.|.++||++-..||+||+.
T Consensus 149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G 227 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG 227 (487)
T ss_pred ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC
Confidence 99999999999999655567888999999999999986 444444 48889999999999999999999999999995
Q ss_pred CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCC
Q 016446 258 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 337 (389)
Q Consensus 258 G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~ 337 (389)
|+++..+..|.-- |.++.+..|++.|.|||-| +.+|++|+.+=+.+..+.=-
T Consensus 228 ~qll~~~~~H~Kt-----VTcL~l~s~~~rLlS~sLD-----------~~VKVfd~t~~Kvv~s~~~~------------ 279 (487)
T KOG0310|consen 228 GQLLTSMFNHNKT-----VTCLRLASDSTRLLSGSLD-----------RHVKVFDTTNYKVVHSWKYP------------ 279 (487)
T ss_pred ceehhhhhcccce-----EEEEEeecCCceEeecccc-----------cceEEEEccceEEEEeeecc------------
Confidence 5667667668654 8999999999999998765 99999998888888777532
Q ss_pred CCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEE
Q 016446 338 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 385 (389)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIr 385 (389)
.+|.+++.|||++++|-|-.||.+-
T Consensus 280 -----------------------~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 280 -----------------------GPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred -----------------------cceeeEEecCCCceEEEecccceee
Confidence 4999999999999999999999874
No 73
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=5e-29 Score=248.89 Aligned_cols=239 Identities=16% Similarity=0.240 Sum_probs=195.6
Q ss_pred ecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC-CeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcC
Q 016446 98 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 98 ~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~-g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~ 173 (389)
+|...+.++.|.|-.|.+|+|++.|+.|+||++.+ ++|++++.+ ..|.+++|| .|..++++ +.|++|||||++
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~---sfD~~lKlwDtE 288 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSA---SFDRFLKLWDTE 288 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeee---ecceeeeeeccc
Confidence 44444566888843899999999999999999976 889999874 589999999 79988876 667999999999
Q ss_pred CCeEEEEEeecCCceeEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeE
Q 016446 174 DGTVLKVFYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 251 (389)
Q Consensus 174 tG~~l~tl~~~~~~~~~v~f~~~~~-~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tI 251 (389)
||+|+..|.. ......|.|. |++ ..+++|..|+.|+.||+++|+.++....|-..|..+.|-|+|++++|++ |+++
T Consensus 289 TG~~~~~f~~-~~~~~cvkf~-pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ 366 (503)
T KOG0282|consen 289 TGQVLSRFHL-DKVPTCVKFH-PDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSV 366 (503)
T ss_pred cceEEEEEec-CCCceeeecC-CCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccE
Confidence 9999999973 2455899998 566 7788899999999999999999999999999999999999999999999 9999
Q ss_pred EEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe---EEEEecCCCC
Q 016446 252 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLAKINATNC 327 (389)
Q Consensus 252 klWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~---~l~tl~gH~~ 327 (389)
+||+.+ +-.++-...+... ...++..+|+|++++.=|.| +.|-|+.+..-- .-..+.||..
T Consensus 367 riWe~~~~v~ik~i~~~~~h----smP~~~~~P~~~~~~aQs~d-----------N~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMH----TMPCLTLHPNGKWFAAQSMD-----------NYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred EEEEcCCCccchhhcchhhc----cCcceecCCCCCeehhhccC-----------ceEEEEecccccccCHhhhhcceec
Confidence 999987 6544433322211 14689999999999987665 789898864311 2345678863
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+ .-=..|.|||||.+|+||+.||.+-+||
T Consensus 432 a--------------------------------Gys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 432 A--------------------------------GYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred c--------------------------------CceeeEEEcCCCCeEEeecCCccEEEee
Confidence 1 1335699999999999999999999998
No 74
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.7e-27 Score=219.99 Aligned_cols=282 Identities=11% Similarity=0.127 Sum_probs=233.0
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 116 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L 116 (389)
+.+++|. ..|.||+|+-+|..|++ |+.| .++.+|.+..+++ ...+-...+...+..+.++|++-.++
T Consensus 14 r~~~~~~-~~v~Sv~wn~~g~~las----gs~d------ktv~v~n~e~~r~--~~~~~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 14 RELQGHV-QKVHSVAWNCDGTKLAS----GSFD------KTVSVWNLERDRF--RKELVYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred HHhhhhh-hcceEEEEcccCceeee----cccC------CceEEEEecchhh--hhhhcccCCCcchhhheeCCCCCcce
Confidence 3456654 78999999999999999 5677 8888999877755 11121123334455689998888999
Q ss_pred EEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEE
Q 016446 117 TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 194 (389)
Q Consensus 117 as~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~ 194 (389)
|+++.|++||+||...++|..... ...=.-+.+| ||+++|++.. |..|-.-|+++-+...+.+. .-.+.++.|+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k---dD~it~id~r~~~~~~~~~~-~~e~ne~~w~ 156 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK---DDRITFIDARTYKIVNEEQF-KFEVNEISWN 156 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC---cccEEEEEecccceeehhcc-cceeeeeeec
Confidence 999999999999999999987775 3333356778 6999988744 45788889888887776652 2456888998
Q ss_pred ecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcC
Q 016446 195 EQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP 272 (389)
Q Consensus 195 ~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~ 272 (389)
.+++.+......|+|.|-....-++++.++.|..--.+|.|+|+|++||+|+ |..+-|||++ --|++.+.-|.=+
T Consensus 157 -~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp-- 233 (313)
T KOG1407|consen 157 -NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP-- 233 (313)
T ss_pred -CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc--
Confidence 6688888888999999999999999999999999999999999999999999 9999999997 7899999988766
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccce
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 352 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
|+.+.||.||++|||||+| .-|-|=+++||..+..++ |+
T Consensus 234 ---VRTlSFS~dg~~lASaSED-----------h~IDIA~vetGd~~~eI~-~~-------------------------- 272 (313)
T KOG1407|consen 234 ---VRTLSFSHDGRMLASASED-----------HFIDIAEVETGDRVWEIP-CE-------------------------- 272 (313)
T ss_pred ---eEEEEeccCcceeeccCcc-----------ceEEeEecccCCeEEEee-cc--------------------------
Confidence 8999999999999998775 799999999999999886 33
Q ss_pred ecccccccCCEEEEEECCCCCEEEEecCC---------CcEEEc
Q 016446 353 RSTVGEALEDITSLFYDEERNEIYTGNRH---------GLVHVW 387 (389)
Q Consensus 353 ~~~~~~~~~~V~svafSpdg~~LaSgs~D---------~tIrlW 387 (389)
.+..+||++|....||=+..| |+||+.
T Consensus 273 --------~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 273 --------GPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred --------CCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 488999999999999988755 577765
No 75
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.4e-28 Score=248.08 Aligned_cols=228 Identities=15% Similarity=0.249 Sum_probs=199.4
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCC--Ce----EEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC-
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKN--YT----MLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG- 175 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~--g~----~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG- 175 (389)
+..+.|++++|-+||.||+||+|+... ++ ++.+++ .+||.+++.. .|..|+++ |.|-|||+|+.+-+
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~---SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA---SSDTTVKVWNAHKDN 106 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe---cCCceEEEeecccCc
Confidence 455568999999999999999999752 21 355554 4799999999 78888776 45589999999988
Q ss_pred -eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE--EE--------Ecc-cCCCceEEEEEcCCCcEE
Q 016446 176 -TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--ME--------VSR-TEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 176 -~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~--~~--------~l~-gh~~~v~sv~fspdg~~l 243 (389)
-|+.++..|.+-|..+++.++.....|+|+-|+.|.|||+.+|.. +. -+. |+...|+++|-+|.|..|
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i 186 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII 186 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence 699999999999999999777788999999999999999998832 22 233 899999999999999999
Q ss_pred EEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 244 LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 244 aS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
++|+ .+-+++||-. ++.+-.|.||..- |..+..++||+.++|+|. ||||||||+...+|++|
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdN-----Vr~ll~~dDGt~~ls~sS-----------DgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDN-----VRVLLVNDDGTRLLSASS-----------DGTIRLWDLGQQRCLAT 250 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccc-----eEEEEEcCCCCeEeecCC-----------CceEEeeeccccceeee
Confidence 9999 9999999996 8888889999875 899999999999999865 59999999999999999
Q ss_pred ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 322 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 322 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
+..|. +.||++.-+|+=+.+++|++||.|..
T Consensus 251 ~~vH~----------------------------------e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 251 YIVHK----------------------------------EGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred EEecc----------------------------------CceEEEeeCCCcceEEecCCCCcEEe
Confidence 99998 58999999999999999999998864
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=224.18 Aligned_cols=274 Identities=16% Similarity=0.130 Sum_probs=224.0
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
-.|.++-|+ |.+||++.-+|.|++|+..+|..-+.+-..- +-+-=+.+.|-+..|+. |+.| ..+..|
T Consensus 107 DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~-~dieWl~WHp~a~illA----G~~D------GsvWmw 175 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV-EDIEWLKWHPRAHILLA----GSTD------GSVWMW 175 (399)
T ss_pred CceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc-CceEEEEecccccEEEe----ecCC------CcEEEE
Confidence 368999999 9999999999999999999999888886443 45555899999998877 6677 777788
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC---CcEEEEEEc-CCceEEE
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~---~~V~~vafS-~g~~la~ 157 (389)
.++.+.. .++|. .+......=.|. |||+.++++..|+||++||+++|++++.+.+ ..-..+.++ .+..+..
T Consensus 176 ~ip~~~~---~kv~~-Gh~~~ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 176 QIPSQAL---CKVMS-GHNSPCTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred ECCCcce---eeEec-CCCCCccccccc-CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 8877532 33544 222222335897 8999999999999999999999999998873 467789999 7777766
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEe--------ecCCceeEEEEEecCC--CeEEEEeCCCcEEEEECCCCeEEEEcccC
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFY--------HLLHRNKKVDFIEQFN--EKLLVKQENENLQILDVRNAELMEVSRTE 227 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~--------~~~~~~~~v~f~~~~~--~~l~~~s~D~tIklWd~~tg~~~~~l~gh 227 (389)
+ +.++.+++-+..+|+.+..+. .+.+.+.+|.|++... ...|.|+-||+|-|||.++-.+++.+. |
T Consensus 251 g---~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-h 326 (399)
T KOG0296|consen 251 G---NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-H 326 (399)
T ss_pred c---cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-C
Confidence 5 455799999999999998887 4666678888874332 234457899999999999888777655 7
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D 305 (389)
...|..+.|.+ ..+|++++ ||+|++||.+ |+|+.++.||+.. |...+++||+++++++|.|
T Consensus 327 e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-----Il~f~ls~~~~~vvT~s~D----------- 389 (399)
T KOG0296|consen 327 EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG-----ILDFALSPQKRLVVTVSDD----------- 389 (399)
T ss_pred CCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh-----eeEEEEcCCCcEEEEecCC-----------
Confidence 78899999999 67777777 9999999997 9999999999987 7999999999999999875
Q ss_pred CeEEEEeCC
Q 016446 306 GSINVSSIL 314 (389)
Q Consensus 306 ~tIklWd~~ 314 (389)
++.|++++.
T Consensus 390 ~~a~VF~v~ 398 (399)
T KOG0296|consen 390 NTALVFEVP 398 (399)
T ss_pred CeEEEEecC
Confidence 899999864
No 77
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=7.7e-27 Score=240.99 Aligned_cols=265 Identities=14% Similarity=0.216 Sum_probs=212.5
Q ss_pred cEEEEEee-ccEEEEEecCceEEEEecccceeee--eeecCCcceEEE-EEEee-CCCEEEEEEEeecCCCcceeeeeee
Q 016446 5 KVIEIVAA-RDIVFALAHSGVCAAFSRETNRRIC--FLNVSPDEVIRS-LFYNK-NNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 5 ~v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~--tl~~~~~~~v~s-v~~sp-dg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
-|+.+.+- +-.|+++++|||+|+|+...++.+. .+.+++ ++|.. +.|-+ |+..|.+ |+.| ..+-
T Consensus 16 DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~-g~i~~~i~y~e~~~~~l~~----g~~D------~~i~ 84 (745)
T KOG0301|consen 16 DVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPK-GFIANSICYAESDKGRLVV----GGMD------TTII 84 (745)
T ss_pred chheeEecCCeEEeecCCCCceeeeeccCcccccceecccCc-ceeeccceeccccCcceEe----eccc------ceEE
Confidence 35555555 6679999999999999986455554 466665 77776 88875 5555777 6788 7887
Q ss_pred EeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcCCceEEE
Q 016446 80 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLI 157 (389)
Q Consensus 80 l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~g~~la~ 157 (389)
+|.+-++.+ ...|+. |...+.+++-. .++. |+|||.|.|+|+|- .|+|..++.+ ..||+|++=|.+.+++
T Consensus 85 v~~~~~~~P--~~~Lkg--H~snVC~ls~~-~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~~~vT 156 (745)
T KOG0301|consen 85 VFKLSQAEP--LYTLKG--HKSNVCSLSIG-EDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPENTYVT 156 (745)
T ss_pred EEecCCCCc--hhhhhc--cccceeeeecC-CcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCCcEEe
Confidence 888776665 333544 44455677754 4665 99999999999997 6788877764 5799999987667767
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
+ +.|++||||. .|+++++|.+|.+-|+.+++.+ +..+++.+.||.||+||+ +|+|+....||+..|+++...
T Consensus 157 g---saDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 157 G---SADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred c---cCcceeeecc--CCchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEec
Confidence 5 5679999999 5999999999999999999973 668999999999999999 999999999999999999988
Q ss_pred CCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 238 YENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 238 pdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
++++.++|.+ |+|+|||+.. +|++.++ |.. ..||++.+=++|.+++-| +||-||||...
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~-e~~q~I~-lPt----tsiWsa~~L~NgDIvvg~------------SDG~VrVfT~~ 288 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD-ECVQVIT-LPT----TSIWSAKVLLNGDIVVGG------------SDGRVRVFTVD 288 (745)
T ss_pred CCCCeEEEecCCceEEEeecC-ceEEEEe-cCc----cceEEEEEeeCCCEEEec------------cCceEEEEEec
Confidence 8888999998 9999999977 8888886 222 238999999999976643 36999999854
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=7e-27 Score=223.67 Aligned_cols=294 Identities=13% Similarity=0.189 Sum_probs=223.5
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec------------cCCCCCcceeEe--eecc
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR------------RGKPDSGFALFE--SESL 100 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~------------~g~~~~~~~l~~--~~~~ 100 (389)
+-+.|.-| ..++++-+|||||..+|+ |+.| -.|+|-|+. .|+.....++-. -+|.
T Consensus 104 Et~ylt~H-K~~cR~aafs~DG~lvAT----GsaD------~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 104 ETKYLTSH-KSPCRAAAFSPDGSLVAT----GSAD------ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV 172 (430)
T ss_pred ceEEEeec-ccceeeeeeCCCCcEEEc----cCCc------ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc
Confidence 45677776 489999999999999999 5566 667777764 222211112111 1244
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe---EEEEec-CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCC
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~---~l~tl~-~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG 175 (389)
.-+..++|. |-.++|+|||.|+||||+|...-. -...++ .+.|+++.|.| |.+|+++. +..++||+|++|-
T Consensus 173 devn~l~FH-Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT---dHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 173 DEVNDLDFH-PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT---DHPTLRLYDVNTY 248 (430)
T ss_pred Ccccceeec-chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec---CCCceeEEeccce
Confidence 445568997 899999999999999999985433 224455 47899999997 88888762 2368999999999
Q ss_pred eEEEEEe---ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCC-ceEEEEEcCCCcEEEEEc-CC
Q 016446 176 TVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFM-TPSAFIFLYENQLFLTFR-NR 249 (389)
Q Consensus 176 ~~l~tl~---~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~-~v~sv~fspdg~~laS~s-D~ 249 (389)
||...-. .|.+.+..|.++ +.+...+++|.||-|||||=-+++|++++ +.|.+ .|-+..|..+|++++|++ |.
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred eEeeecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 9987654 788899999998 56778888999999999999999999987 45654 789999999999999999 99
Q ss_pred eEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe-cCCCC
Q 016446 250 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNC 327 (389)
Q Consensus 250 tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl-~gH~~ 327 (389)
++|||.+. |+++++..|-..--+..--....|.....|.+.-.+- .+.+--||..++..+..+ .||+
T Consensus 328 ~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa----------s~slcsWdaRtadr~~l~slgHn- 396 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA----------SNSLCSWDARTADRVALLSLGHN- 396 (430)
T ss_pred eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc----------cCceeeccccchhhhhhcccCCC-
Confidence 99999996 9999988875210000001334566666666653221 256778999988776655 4677
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|..+.-||.+.-..++|.|-.+|+|-
T Consensus 397 ---------------------------------~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 397 ---------------------------------GAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred ---------------------------------CCceEEEeCCCCCceeeecccceeeeee
Confidence 5899999999999999999999999994
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=8.7e-28 Score=236.40 Aligned_cols=273 Identities=13% Similarity=0.134 Sum_probs=223.2
Q ss_pred cccEEEEEee-c-cEEEEEecCceEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 3 RTKVIEIVAA-R-DIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 3 ~~~v~~i~~~-~-~~~a~~~~~gtiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
+.+|-+|.|- + +++|++..|.-|++|+..-++ .+.+|-|.. ..|.++.|-++|+.+|.+ +.| ...
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-g~it~~d~d~~~~~~iAa----s~d------~~~ 243 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL-GNITSIDFDSDNKHVIAA----SND------KNL 243 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC-CCcceeeecCCCceEEee----cCC------Cce
Confidence 4678888898 4 999999999999999986555 677888875 789999999999999884 577 788
Q ss_pred eEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEE
Q 016446 79 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLI 157 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~ 157 (389)
++|++..+++..+ |- .|..-+.++.|. -....++||+.|.|||+||+..+.|..+.- ...+.+|..++ ..++
T Consensus 244 r~Wnvd~~r~~~T--Ls--GHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-~~~~- 316 (459)
T KOG0288|consen 244 RLWNVDSLRLRHT--LS--GHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-SDVI- 316 (459)
T ss_pred eeeeccchhhhhh--hc--ccccceeeehhh-ccccceeeccccchhhhhhhhhhheeccccccccccceEecc-eeee-
Confidence 9999988776222 21 244445678886 333349999999999999999999987764 77888888873 2332
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC----CceEE
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF----MTPSA 233 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~----~~v~s 233 (389)
++..|++||+||++++.+..+.+.+ +.+.+|..+ +++-.+++.+.|.|+++.|+++.+..+++.... .-.+.
T Consensus 317 --SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls-~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 317 --SGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLS-MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTR 392 (459)
T ss_pred --ecccccceEEEeccCCceeeEeecC-cceeeEeec-cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccce
Confidence 3678899999999999999999976 599999998 677888888999999999999999988874321 12778
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 234 FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 234 v~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
+.||||+.|+|+|| ||.|+||++. |+|-..|...... ..|.+++|+|-|..|++++.+ +.+.||
T Consensus 393 vvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk~-----------~~v~lW 458 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADKQ-----------KAVTLW 458 (459)
T ss_pred eEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC---cceEEEEEcCCCchhhcccCC-----------cceEec
Confidence 99999999999999 9999999996 9998888754432 138999999999999998664 899999
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.8e-26 Score=247.61 Aligned_cols=286 Identities=12% Similarity=0.080 Sum_probs=223.8
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeec--CCCcceeeeeeeEeEecc-C------CCCCcceeEe-eecccCceeEE
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYAS--DNFSSLKCRSTKIEYIRR-G------KPDSGFALFE-SESLKWPGFVE 107 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~--~d~~~l~~~~~~l~~i~~-g------~~~~~~~l~~-~~~~~~~~~v~ 107 (389)
++-+|+...|.+|..+|||..+|+ |+ .| ..+.||.... . ..+--..|++ ..|.+.+..|.
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aT----gGq~~d------~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR 76 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFAT----GGQVLD------GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVR 76 (942)
T ss_pred cccccCCeeEEEEEecCCceeEec----CCcccc------ccceeeccccccchhhhhhcccchhheeeccccCceeEEE
Confidence 455677788999999999999888 55 55 4445776410 1 0010122555 45778788899
Q ss_pred EecCCCeEEEEecCCCeEEEEeCCC-------C-----------eEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCee
Q 016446 108 FDDVNGKVLTYSAQDSIYKVFDLKN-------Y-----------TMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVP 166 (389)
Q Consensus 108 Fs~pdG~~Las~s~D~tiklWdl~~-------g-----------~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~t 166 (389)
|| |||++||+||+|+-|.+|.... | ++..+| |...|.+|++| ++.+||+. +-|++
T Consensus 77 ~S-~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~---s~Dns 152 (942)
T KOG0973|consen 77 FS-PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV---SLDNS 152 (942)
T ss_pred EC-CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe---cccce
Confidence 98 9999999999999999999762 1 133344 45789999999 57788765 66799
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC------ceEEEEEcCCC
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM------TPSAFIFLYEN 240 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~------~v~sv~fspdg 240 (389)
|-|||..+.+++++|.+|+..|..|.|- |-|+++|+-+.|+|||+|+..+-.+.+...+++. ....+.|||||
T Consensus 153 Viiwn~~tF~~~~vl~~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG 231 (942)
T KOG0973|consen 153 VIIWNAKTFELLKVLRGHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG 231 (942)
T ss_pred EEEEccccceeeeeeecccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc
Confidence 9999999999999999999999999997 6799999999999999999777667777766654 56778899999
Q ss_pred cEEEEEc--C---CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC-----CC------------EEEEEecCCCc
Q 016446 241 QLFLTFR--N---RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD-----QD------------LIISYCKAEPE 297 (389)
Q Consensus 241 ~~laS~s--D---~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd-----G~------------~laS~s~D~~~ 297 (389)
++|++.. . .++.|-+.+ .++=..|-||..+ +..|+|+|- .+ .+|+||
T Consensus 232 ~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p-----~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS----- 301 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAP-----VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS----- 301 (942)
T ss_pred CeecchhhccCCcceeEEEecCCceeeeeeecCCCc-----eEEEEeChHHhccccccCCccCCCcceEEEEEec-----
Confidence 9999983 3 389999986 6778899999998 789999991 11 566665
Q ss_pred ccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEE
Q 016446 298 DQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 377 (389)
Q Consensus 298 ~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaS 377 (389)
.|++|-||....-+.+.. .|+- + . ..|..+++||||-.|..
T Consensus 302 ------qDrSlSVW~T~~~RPl~v--i~~l--f----------~-------------------~SI~DmsWspdG~~Lfa 342 (942)
T KOG0973|consen 302 ------QDRSLSVWNTALPRPLFV--IHNL--F----------N-------------------KSIVDMSWSPDGFSLFA 342 (942)
T ss_pred ------CCccEEEEecCCCCchhh--hhhh--h----------c-------------------CceeeeeEcCCCCeEEE
Confidence 469999999755555433 3441 0 0 48999999999999999
Q ss_pred ecCCCcEEEc
Q 016446 378 GNRHGLVHVW 387 (389)
Q Consensus 378 gs~D~tIrlW 387 (389)
+|.||+|.+-
T Consensus 343 cS~DGtV~~i 352 (942)
T KOG0973|consen 343 CSLDGTVALI 352 (942)
T ss_pred EecCCeEEEE
Confidence 9999999874
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=2.9e-27 Score=220.94 Aligned_cols=275 Identities=15% Similarity=0.189 Sum_probs=229.0
Q ss_pred cEEEEEee-----ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 5 KVIEIVAA-----RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 5 ~v~~i~~~-----~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
.|-++.|+ |-.|.++|.|+.=-|-+-+||--+-||.||. ..||+-.++.+.-.-||++ .| -+++
T Consensus 16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghk-gavw~~~l~~na~~aasaa----ad------ftak 84 (334)
T KOG0278|consen 16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHK-GAVWSATLNKNATRAASAA----AD------FTAK 84 (334)
T ss_pred ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccC-cceeeeecCchhhhhhhhc----cc------chhh
Confidence 46777777 8899999999999999999999999999985 9999999999887777754 56 6788
Q ss_pred EeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEe--cCCcEEEEEEc-CCceE
Q 016446 80 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSI--SDKHVQEIKIS-PGIML 155 (389)
Q Consensus 80 l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl--~~~~V~~vafS-~g~~l 155 (389)
+||..+|.... -|. +..-+.+|+|+ .|..+|.+|+.++.+|++|++..+ +...+ |...|+.+-|. -++.+
T Consensus 85 vw~a~tgdelh---sf~--hkhivk~~af~-~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~i 158 (334)
T KOG0278|consen 85 VWDAVTGDELH---SFE--HKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCI 158 (334)
T ss_pred hhhhhhhhhhh---hhh--hhheeeeEEec-ccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceE
Confidence 99999998732 233 33345899998 899999999999999999998666 44444 45689999999 56666
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEE
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 235 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~ 235 (389)
+++ ..|+||||||..||+..++|.. .+++.++..+ + ++.+++..+.+.|+.||..+-.+++..+-- --|.+..
T Consensus 159 LSS---add~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs-~-dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SAS 231 (334)
T KOG0278|consen 159 LSS---ADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVS-Q-DGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESAS 231 (334)
T ss_pred Eee---ccCCceEEEEeccCcEEEEEec-CCCCcceeec-c-CCCEEEEecCceeEEeccccccceeeccCc-ccccccc
Confidence 554 4579999999999999999985 3888999987 4 556777778899999999998887764432 3588889
Q ss_pred EcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe-ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 236 FLYENQLFLTFR-NRTVAVWNFR-GELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 236 fspdg~~laS~s-D~tIklWd~~-G~~l~tl-~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
.+|+...++.|+ |.-+.-+|.+ |+.+..+ +||-++ |-+|.|||||..-||||+ |||||||.
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp-----VhcVrFSPdGE~yAsGSE-----------DGTirlWQ 295 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP-----VHCVRFSPDGELYASGSE-----------DGTIRLWQ 295 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc-----eEEEEECCCCceeeccCC-----------CceEEEEE
Confidence 999999999999 9999999997 9988886 899888 899999999999999876 59999999
Q ss_pred CCCCeEE
Q 016446 313 ILTGKCL 319 (389)
Q Consensus 313 ~~tg~~l 319 (389)
...|+.-
T Consensus 296 t~~~~~~ 302 (334)
T KOG0278|consen 296 TTPGKTY 302 (334)
T ss_pred ecCCCch
Confidence 8766643
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-25 Score=212.49 Aligned_cols=274 Identities=15% Similarity=0.164 Sum_probs=213.3
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecC--
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-- 121 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~-- 121 (389)
...|.++.|+++|+.|++++ .| -+++|+|...|+.. ..+-...+. +.-+.|-.++ ..+..+|.
T Consensus 14 ~~~i~sl~fs~~G~~litss----~d------Dsl~LYd~~~g~~~--~ti~skkyG--~~~~~Fth~~-~~~i~sStk~ 78 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSS----ED------DSLRLYDSLSGKQV--KTINSKKYG--VDLACFTHHS-NTVIHSSTKE 78 (311)
T ss_pred CCceeEEEecCCCCEEEEec----CC------CeEEEEEcCCCcee--eEeeccccc--ccEEEEecCC-ceEEEccCCC
Confidence 36899999999999999943 55 58999999999872 223222222 3457887544 44555565
Q ss_pred CCeEEEEeCCCCeEEEEecC--CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCC
Q 016446 122 DSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 198 (389)
Q Consensus 122 D~tiklWdl~~g~~l~tl~~--~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~ 198 (389)
|.|||.=++.+.+.++.+.+ ..|.++..|| +..++++ +.|+||||||++.-+|..-+.- .+-.-+||. |.|
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~---S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfD-p~G 152 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSS---SLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFD-PEG 152 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEec---ccCCeEEeeEecCCCCceEEec--CCCcceeEC-CCC
Confidence 99999999999999988875 5899999997 6677665 6679999999998888877762 334556665 666
Q ss_pred CeEEEEeCCCcEEEEECCC--CeEEEEcc---cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeC-CCcEEEEeccCcCCc
Q 016446 199 EKLLVKQENENLQILDVRN--AELMEVSR---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWH 271 (389)
Q Consensus 199 ~~l~~~s~D~tIklWd~~t--g~~~~~l~---gh~~~v~sv~fspdg~~laS~s-D~tIklWd~-~G~~l~tl~gh~~~~ 271 (389)
-.+|++...+.|||+|++. +.+.+++. +-......+-|||||+.|+-+. .+.+.+-|. +|.++.++++|...-
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence 6677777666999999996 44555543 3466788899999999988887 889999998 699999999988652
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC-CCCCCCcccccCCCCCCCcccccccc
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSS 350 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (389)
.. --+..|+|||+++++|+. ||+|.+|++++|+.+..++| |.
T Consensus 233 ~~--~~~a~ftPds~Fvl~gs~-----------dg~i~vw~~~tg~~v~~~~~~~~------------------------ 275 (311)
T KOG1446|consen 233 NL--PLSATFTPDSKFVLSGSD-----------DGTIHVWNLETGKKVAVLRGPNG------------------------ 275 (311)
T ss_pred Cc--ceeEEECCCCcEEEEecC-----------CCcEEEEEcCCCcEeeEecCCCC------------------------
Confidence 11 148899999999999875 49999999999999999998 44
Q ss_pred ceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 351 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 351 ~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
.++.++-|+|.--++||++. .+-+|
T Consensus 276 ----------~~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 276 ----------GPVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred ----------CCccccccCCceeeeeecCc--eEEEE
Confidence 48889999999999988764 34444
No 83
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=6.6e-26 Score=234.31 Aligned_cols=320 Identities=15% Similarity=0.220 Sum_probs=244.4
Q ss_pred EEEeeccEEEEEecCceEEEEecccceeeeeeecCCcce-----------------------EEEEEEeeCCCEEEEEEE
Q 016446 8 EIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEV-----------------------IRSLFYNKNNDSLITVSV 64 (389)
Q Consensus 8 ~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~-----------------------v~sv~~spdg~~l~s~s~ 64 (389)
+|-.+.++||++|-+|+|||++.+|=..+-||+..|.-. --...|.|..+.|..+-
T Consensus 265 CIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVY- 343 (1080)
T KOG1408|consen 265 CICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVY- 343 (1080)
T ss_pred eeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEE-
Confidence 566679999999999999999998766777776654211 11345777777776643
Q ss_pred eecCCCcceeeeeeeEeEecc----CCCC----CcceeEeeeccc-Ccee--EEEecCCCeEEEEecCCCeEEEEeCCCC
Q 016446 65 YASDNFSSLKCRSTKIEYIRR----GKPD----SGFALFESESLK-WPGF--VEFDDVNGKVLTYSAQDSIYKVFDLKNY 133 (389)
Q Consensus 65 ~~~~d~~~l~~~~~~l~~i~~----g~~~----~~~~l~~~~~~~-~~~~--v~Fs~pdG~~Las~s~D~tiklWdl~~g 133 (389)
.| |.+++||++. ||+. +..-+|.-+... .+.. -+-- |.|. .+++|.|+||||||++.+
T Consensus 344 ---nd------hSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~acl-p~~c-F~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 344 ---ND------HSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACL-PRGC-FTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred ---cC------ceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccC-Cccc-eeEecCCCcEEEeecccc
Confidence 56 8999999954 4442 111133322111 0000 1221 4454 667899999999999753
Q ss_pred e---EEE-E------------------ec-----------------CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcC
Q 016446 134 T---MLY-S------------------IS-----------------DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 134 ~---~l~-t------------------l~-----------------~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~ 173 (389)
. .++ . ++ ...|++|++| +|+.||++... +++|+.+++
T Consensus 413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~---GnlrVy~Lq 489 (1080)
T KOG1408|consen 413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG---GNLRVYDLQ 489 (1080)
T ss_pred cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc---CceEEEEeh
Confidence 2 110 0 00 1369999999 69999987544 799999999
Q ss_pred CCeEEEEEeecCCceeEEEEEecC--CCeEEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEE--------------
Q 016446 174 DGTVLKVFYHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIF-------------- 236 (389)
Q Consensus 174 tG~~l~tl~~~~~~~~~v~f~~~~--~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~f-------------- 236 (389)
.-+.+-+++.|...+..+.|+.|. ...||+++.|.-|.++|+.. =.++++|.+|...|++|.|
T Consensus 490 ~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 490 ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence 888888888999999999998664 24566689999999999974 3568899999999999999
Q ss_pred -----------------------------------cCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEE
Q 016446 237 -----------------------------------LYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 279 (389)
Q Consensus 237 -----------------------------------spdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv 279 (389)
-|.-++++++. |+.|+|+|++ |+++++|+|..+-. +..-.|
T Consensus 570 DksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e--G~lIKv 647 (1080)
T KOG1408|consen 570 DKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE--GDLIKV 647 (1080)
T ss_pred chhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC--CceEEE
Confidence 23456788998 9999999997 99999999754421 235688
Q ss_pred EECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccc
Q 016446 280 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 359 (389)
Q Consensus 280 ~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
...|.|-|||+.|.| +|+-+.|.-+|+|++++.||.
T Consensus 648 ~lDPSgiY~atScsd-----------ktl~~~Df~sgEcvA~m~GHs--------------------------------- 683 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSD-----------KTLCFVDFVSGECVAQMTGHS--------------------------------- 683 (1080)
T ss_pred EECCCccEEEEeecC-----------CceEEEEeccchhhhhhcCcc---------------------------------
Confidence 999999999999875 899999999999999999998
Q ss_pred cCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 360 LEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 360 ~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+.|+.+-|+||-+.|+|.+.||.|-+|+.
T Consensus 684 -E~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 684 -EAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred -hheeeeeecccchhheeecCCceEEEEEC
Confidence 69999999999999999999999999973
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.9e-27 Score=234.25 Aligned_cols=229 Identities=16% Similarity=0.165 Sum_probs=192.5
Q ss_pred CceeEEEec--CCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe
Q 016446 102 WPGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 102 ~~~~v~Fs~--pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
.+.+++||| |+. ..+++| -.+.|++..+...+.++. ...|.++.|- ||..||++. ..+-||++|+.+..
T Consensus 28 ~vssl~fsp~~P~d-~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD---~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYD-FAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD---ESGHVKVFDMKSRV 101 (487)
T ss_pred cceeEecCCCCCCc-eEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC---CcCcEEEeccccHH
Confidence 467899984 222 333444 578999987777777776 5789999999 898888763 34899999988877
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC-cEEEEEc-CCeEEEE
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVW 254 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg-~~laS~s-D~tIklW 254 (389)
.|+.+..|++++..+.|.+.++..+++++.|+.+|+||+.++...-.+.||++.|++.+|+|.. .+++||+ ||+||+|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 8999999999999999997666777778999999999999999755899999999999999964 5899999 9999999
Q ss_pred eCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe-EEEEecCCCCCCCc
Q 016446 255 NFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNCSPKV 331 (389)
Q Consensus 255 d~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~-~l~tl~gH~~~~~~ 331 (389)
|.. +..+.+|. |..+ |.+|.|-|.|.+|||++. ..||+||+.+|. .+..+..|.
T Consensus 182 DtR~~~~~v~eln-hg~p-----Ve~vl~lpsgs~iasAgG------------n~vkVWDl~~G~qll~~~~~H~----- 238 (487)
T KOG0310|consen 182 DTRSLTSRVVELN-HGCP-----VESVLALPSGSLIASAGG------------NSVKVWDLTTGGQLLTSMFNHN----- 238 (487)
T ss_pred EeccCCceeEEec-CCCc-----eeeEEEcCCCCEEEEcCC------------CeEEEEEecCCceehhhhhccc-----
Confidence 995 57788885 7766 799999999999999875 589999998655 454454487
Q ss_pred ccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 332 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+.|+|+.|..|++.|+|||-|+-||++|
T Consensus 239 -----------------------------KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 239 -----------------------------KTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred -----------------------------ceEEEEEeecCCceEeecccccceEEEE
Confidence 6999999999999999999999999987
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-25 Score=229.21 Aligned_cols=265 Identities=12% Similarity=0.138 Sum_probs=220.4
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcce
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 93 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~ 93 (389)
..||++ ....|.||+..+|+...-...+ .+.|.||.|+|+|+.||. |..+ ..+.|||+...+.. ..
T Consensus 189 n~laVa-lg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~Lav----G~~~------g~v~iwD~~~~k~~--~~ 254 (484)
T KOG0305|consen 189 NVLAVA-LGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAV----GTSD------GTVQIWDVKEQKKT--RT 254 (484)
T ss_pred CeEEEE-ecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEE----eecC------CeEEEEehhhcccc--cc
Confidence 344544 4678899999999855544544 589999999999999999 6777 89999998776652 22
Q ss_pred eEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEE-e--cCCcEEEEEEc-CCceEEEEecCCCCeeEEE
Q 016446 94 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-I--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 94 l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~t-l--~~~~V~~vafS-~g~~la~~~~~s~d~tikl 169 (389)
+.. .+...+.++++. +..|.+|+.|+.|..+|+...+.+.. + |...|..++++ ++.+||++ +.|+.+.|
T Consensus 255 ~~~-~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASG---gnDN~~~I 327 (484)
T KOG0305|consen 255 LRG-SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASG---GNDNVVFI 327 (484)
T ss_pred ccC-CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccC---CCccceEe
Confidence 221 155667889995 67899999999999999988875433 4 45789999999 89999865 77899999
Q ss_pred EEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE-
Q 016446 170 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF- 246 (389)
Q Consensus 170 Wd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s--~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~- 246 (389)
||...-+.+.++..|...|+.++|.|...+.||+|+ .|++||+||..+|++++.+.... +|-+++|+|..+-|+++
T Consensus 328 wd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs-QVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 328 WDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS-QVCSLIWSKKYKELLSTH 406 (484)
T ss_pred ccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC-ceeeEEEcCCCCEEEEec
Confidence 999888899999999999999999977778888864 99999999999999999877654 89999999988666665
Q ss_pred c--CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC
Q 016446 247 R--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 247 s--D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
+ ++.|.||+.. -+.+..|.||... |..++.||||+++++|+.| .|+|+|++-..
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~R-----Vl~la~SPdg~~i~t~a~D-----------ETlrfw~~f~~ 463 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSR-----VLYLALSPDGETIVTGAAD-----------ETLRFWNLFDE 463 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcce-----eEEEEECCCCCEEEEeccc-----------CcEEeccccCC
Confidence 4 8899999995 8899999999988 8999999999999999875 89999998753
No 86
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3e-26 Score=214.48 Aligned_cols=232 Identities=10% Similarity=0.143 Sum_probs=187.9
Q ss_pred eeEEEecC-CCeEE-EEec-----CCCeEEEEeCCCCeEEEEe---c-CCcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 104 GFVEFDDV-NGKVL-TYSA-----QDSIYKVFDLKNYTMLYSI---S-DKHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 104 ~~v~Fs~p-dG~~L-as~s-----~D~tiklWdl~~g~~l~tl---~-~~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
++|.|||- ++++. |++. ..|.+-|=++..++-+..+ . .+.+.+|++|+ ..+++++ +.|+++|||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a---~GDGSLrl~ 88 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAA---SGDGSLRLF 88 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEE---ecCceEEEe
Confidence 57999852 33332 2222 3788888888655544333 2 57899999993 4455454 456899999
Q ss_pred EcC-CCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC-CCcEEEEEc-
Q 016446 171 SIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR- 247 (389)
Q Consensus 171 d~~-tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-dg~~laS~s- 247 (389)
|+. .-..|+.++.|...|.+|.+++...+.++++|.|+|||||+..-++-++|++||..-|+..+||| ...++||+|
T Consensus 89 d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 89 DLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred ccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 953 23478888999999999999987788899999999999999999999999999999999999998 678999998
Q ss_pred CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEec
Q 016446 248 NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKIN 323 (389)
Q Consensus 248 D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~ 323 (389)
|++.||||++ |+.+. ++.|... +.+..|+. |-..||+|+ .|++||.||+.. ...+..|.
T Consensus 169 d~~l~lwdvr~~gk~~~-i~ah~~E-----il~cdw~ky~~~vl~Tg~-----------vd~~vr~wDir~~r~pl~eL~ 231 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMS-IEAHNSE-----ILCCDWSKYNHNVLATGG-----------VDNLVRGWDIRNLRTPLFELN 231 (311)
T ss_pred CceEEEEEecCCCceeE-EEeccce-----eEeecccccCCcEEEecC-----------CCceEEEEehhhccccceeec
Confidence 9999999995 88776 8889854 68888887 667777765 469999999976 45788999
Q ss_pred CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEccC
Q 016446 324 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 324 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~~ 389 (389)
||+ -.|..|.|||-. ..|||+|.|=|+||||.
T Consensus 232 gh~----------------------------------~AVRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 232 GHG----------------------------------LAVRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred CCc----------------------------------eEEEEEecCcchhhHhhhccccceEEeccc
Confidence 998 589999999976 58999999999999983
No 87
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=227.07 Aligned_cols=306 Identities=14% Similarity=0.164 Sum_probs=240.2
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
|+ |+.++..|.++|||+.+|+.++++++.. ..|.++-=+|==+.+|. |-.+ .+|-|.+++.++.
T Consensus 173 NK-IvvGs~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ieqsPaLDVVai----G~~~------G~ViifNlK~dki---- 236 (910)
T KOG1539|consen 173 NK-IVVGSSQGRLQLWNVRTGKVVYTFQEFF-SRITAIEQSPALDVVAI----GLEN------GTVIIFNLKFDKI---- 236 (910)
T ss_pred ee-EEEeecCCcEEEEEeccCcEEEEecccc-cceeEeccCCcceEEEE----eccC------ceEEEEEcccCcE----
Confidence 44 6678999999999999999999999986 89999999997665555 6777 8888999999987
Q ss_pred eeEeeec-ccCceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEcCCceEEEEecCCCCeeE
Q 016446 93 ALFESES-LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHVPL 167 (389)
Q Consensus 93 ~l~~~~~-~~~~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS~g~~la~~~~~s~d~ti 167 (389)
|++..+ .+.+.+++|. .||. +||+|...|.+-+|||+.-+++..+. .+.|....|-||+-+..++ +.|+.+
T Consensus 237 -l~sFk~d~g~VtslSFr-tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta--~~DnSl 312 (910)
T KOG1539|consen 237 -LMSFKQDWGRVTSLSFR-TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA--GADNSL 312 (910)
T ss_pred -EEEEEccccceeEEEec-cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec--cCCCce
Confidence 444222 6788999998 7886 67888888999999998777765553 4678888898888766653 456777
Q ss_pred EEE--EcCCC--eEEEEEeecCCceeEEEEEecCC---------------------------------------------
Q 016446 168 KIL--SIEDG--TVLKVFYHLLHRNKKVDFIEQFN--------------------------------------------- 198 (389)
Q Consensus 168 klW--d~~tG--~~l~tl~~~~~~~~~v~f~~~~~--------------------------------------------- 198 (389)
|+| |...| +.|+.=.||..+-..+.|....+
T Consensus 313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 777 43333 33443334444333333321000
Q ss_pred --------------------------------------------------------------------CeEEEEeCCCcE
Q 016446 199 --------------------------------------------------------------------EKLLVKQENENL 210 (389)
Q Consensus 199 --------------------------------------------------------------------~~l~~~s~D~tI 210 (389)
..-.+|+..|+|
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I 472 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI 472 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence 012345678999
Q ss_pred EEEECCCCeEEEEc---ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEE------------------------
Q 016446 211 QILDVRNAELMEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV------------------------ 261 (389)
Q Consensus 211 klWd~~tg~~~~~l---~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l------------------------ 261 (389)
-++|+++|.....+ ..|..+|..++.-.-+++++|++ ||-+|.||+. ..++
T Consensus 473 d~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 473 DRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred EEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh
Confidence 99999999999998 58999999999999999999998 9999999976 4422
Q ss_pred -----------------EEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 262 -----------------TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 262 -----------------~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
+.|.||++. |++..|||||++|+|+|.| ++||+||+.||+|+-.|.-
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nr-----itd~~FS~DgrWlisasmD-----------~tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNR-----ITDMTFSPDGRWLISASMD-----------STIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccc-----eeeeEeCCCCcEEEEeecC-----------CcEEEEeccCcceeeeEec
Confidence 456688887 7999999999999999886 8999999999999988743
Q ss_pred CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC-CcEEEccC
Q 016446 325 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH-GLVHVWSN 389 (389)
Q Consensus 325 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D-~tIrlW~~ 389 (389)
- .+..+|.|||+|..||+...| .-|.||-|
T Consensus 617 d-----------------------------------~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 617 D-----------------------------------SPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred C-----------------------------------CcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 2 488999999999999999999 78999976
No 88
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.7e-27 Score=227.78 Aligned_cols=280 Identities=13% Similarity=0.127 Sum_probs=226.6
Q ss_pred eeeeeecCCcceEEEEEEeeCC-CEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCC
Q 016446 35 RICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 113 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg-~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG 113 (389)
.++.|.||. +.|.++|=.|.- .+++| |+.| .+++||++.+.++ ...|. .+.|.+..+.++ .
T Consensus 58 Fv~~L~gHr-dGV~~lakhp~~ls~~aS----Gs~D------G~VkiWnlsqR~~---~~~f~-AH~G~V~Gi~v~-~-- 119 (433)
T KOG0268|consen 58 FVGSLDGHR-DGVSCLAKHPNKLSTVAS----GSCD------GEVKIWNLSQREC---IRTFK-AHEGLVRGICVT-Q-- 119 (433)
T ss_pred chhhccccc-cccchhhcCcchhhhhhc----cccC------ceEEEEehhhhhh---hheee-cccCceeeEEec-c--
Confidence 456787875 999999999976 66777 6788 8999999988876 22232 456667889996 2
Q ss_pred eEEEEecCCCeEEEEeCCCCeEEEEecC-CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l~tl~~-~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
....++++|+|||.|-+ .|.++.++.+ ..+..|.-+ -+..+|+++ ..|-|||.+--..+++|+--.+.+.+|
T Consensus 120 ~~~~tvgdDKtvK~wk~-~~~p~~tilg~s~~~gIdh~~~~~~FaTcG-----e~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKI-DGPPLHTILGKSVYLGIDHHRKNSVFATCG-----EQIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred cceEEecCCcceeeeec-cCCcceeeeccccccccccccccccccccC-----ceeeecccccCCccceeecCCCceeEE
Confidence 56778999999999997 5668888885 467788877 577777653 369999998888999998667888999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--CcEEEEeccCc
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHL 268 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~--G~~l~tl~gh~ 268 (389)
.|+|.....|+++..|+.|-|+|++++.+++-+. -....+.|+|+|++-.|++++ |..+-.+|+. -+.+....+|.
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv 272 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV 272 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccc
Confidence 9996555666667799999999999998866432 234567899999999999999 9999999996 67888999998
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccc
Q 016446 269 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 348 (389)
Q Consensus 269 ~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 348 (389)
.. |.+|.|||-|+-+||||.| .+|||+.+..|..-... |+
T Consensus 273 sA-----V~dVdfsptG~EfvsgsyD-----------ksIRIf~~~~~~SRdiY--ht---------------------- 312 (433)
T KOG0268|consen 273 SA-----VMDVDFSPTGQEFVSGSYD-----------KSIRIFPVNHGHSRDIY--HT---------------------- 312 (433)
T ss_pred ee-----EEEeccCCCcchhcccccc-----------ceEEEeecCCCcchhhh--hH----------------------
Confidence 87 8999999999999999876 89999998755432222 22
Q ss_pred ccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 349 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 349 ~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.++ +.|.+|.||-|.++++|||.|+.||||.
T Consensus 313 -kRM--------q~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 313 -KRM--------QHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred -hhh--------heeeEEEEeccccEEEecCCCcceeeee
Confidence 222 5899999999999999999999999996
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=5.8e-25 Score=207.10 Aligned_cols=272 Identities=15% Similarity=0.168 Sum_probs=220.5
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
.+.+|-+- |+.|++.++|.+..+|-..+|+.|-+..||. ..||++..+-+-+.|++ |+.| .+++|||
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt-GavW~~Did~~s~~liT----GSAD------~t~kLWD 80 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT-GAVWCCDIDWDSKHLIT----GSAD------QTAKLWD 80 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC-ceEEEEEecCCcceeee----cccc------ceeEEEE
Confidence 46778887 9999999999999999877899999999985 99999999999999999 5677 8999999
Q ss_pred eccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec-----CCCeEEEEeCC-------CCeEEEEec--CCcEEEEE
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-----QDSIYKVFDLK-------NYTMLYSIS--DKHVQEIK 148 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s-----~D~tiklWdl~-------~g~~l~tl~--~~~V~~va 148 (389)
+++|++ +++-.....+..|.|+ ++|.+++... .-+.|-+.|+. .-++++.+. ...+...-
T Consensus 81 v~tGk~-----la~~k~~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~ 154 (327)
T KOG0643|consen 81 VETGKQ-----LATWKTNSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL 154 (327)
T ss_pred cCCCcE-----EEEeecCCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee
Confidence 999997 5554455566789998 8887766554 34689999987 344566665 46788888
Q ss_pred EcC-CceEEEEecCCCCeeEEEEEcCCCeEE-EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc
Q 016446 149 ISP-GIMLLIFNRSSSHVPLKILSIEDGTVL-KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 226 (389)
Q Consensus 149 fS~-g~~la~~~~~s~d~tiklWd~~tG~~l-~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g 226 (389)
++| ++.|.++ ..|+.|..||+++|+.+ ..-+.|.+.+..++|+ ++..+++++|.|.|-||||+.+-++++++..
T Consensus 155 Wg~l~~~ii~G---he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 155 WGPLGETIIAG---HEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred ecccCCEEEEe---cCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEEeee
Confidence 886 8888776 55689999999999655 4557899999999998 7889999999999999999999999999887
Q ss_pred CCCceEEEEEcCCCcEEEEEc--CC-eE------------EEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEE
Q 016446 227 EFMTPSAFIFLYENQLFLTFR--NR-TV------------AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 290 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~s--D~-tI------------klWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS 290 (389)
.. +|++.|++|-...++-++ +- -| |.+++- -|.+...+||=++ |++|||+|||+-.+|
T Consensus 231 e~-PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP-----INsvAfhPdGksYsS 304 (327)
T KOG0643|consen 231 ER-PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP-----INSVAFHPDGKSYSS 304 (327)
T ss_pred cc-cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC-----cceeEECCCCccccc
Confidence 65 899999999777776664 21 11 122221 1346678899998 799999999999998
Q ss_pred EecCCCcccccCCCCCeEEEEeCC
Q 016446 291 YCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 291 ~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
|++ ||.|||--..
T Consensus 305 GGE-----------DG~VR~h~Fd 317 (327)
T KOG0643|consen 305 GGE-----------DGYVRLHHFD 317 (327)
T ss_pred CCC-----------CceEEEEEec
Confidence 755 5999997543
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-25 Score=214.22 Aligned_cols=288 Identities=13% Similarity=0.107 Sum_probs=220.2
Q ss_pred EEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeE
Q 016446 16 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 95 (389)
Q Consensus 16 ~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~ 95 (389)
|++.-+++|++ -++.+.+.|| .+.||-|+--.--..+.++ +.| ++++||.+..|++ |.
T Consensus 127 ivssFk~~t~~------~~lvre~~GH-kDGiW~Vaa~~tqpi~gtA----SAD------hTA~iWs~Esg~C-----L~ 184 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGH-KDGIWHVAADSTQPICGTA----SAD------HTARIWSLESGAC-----LA 184 (481)
T ss_pred heeeecCCcee------Eeehhhhccc-ccceeeehhhcCCcceeec----ccc------cceeEEeeccccc-----ee
Confidence 55666666643 2455667887 4999999987766666664 466 9999999999998 44
Q ss_pred e-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCC----CCeEEE-Eec-C-CcEEEEEEcC-CceEEEEecCCCCee
Q 016446 96 E-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTMLY-SIS-D-KHVQEIKISP-GIMLLIFNRSSSHVP 166 (389)
Q Consensus 96 ~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~----~g~~l~-tl~-~-~~V~~vafS~-g~~la~~~~~s~d~t 166 (389)
+ .++.|.+.+++|+ |.|.+++++|.|+|..+|... ..+... +-+ . +++ --|| ...-..++..++..|
T Consensus 185 ~Y~GH~GSVNsikfh-~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~---e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 185 TYTGHTGSVNSIKFH-NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE---EHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred eecccccceeeEEec-cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh---hcccccccccccccccCCce
Confidence 3 5677778889998 899999999999999999832 111110 111 1 111 1121 111111111222256
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~ 246 (389)
|| ..|..|++|.+.|-...|. ..+++++++|+|.|..|||+++|++++.|.||....+-+.-.|..++++++
T Consensus 261 iR-------vPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 261 IR-------VPLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS 332 (481)
T ss_pred ee-------eeeeeeeccccceEehhhh-cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEe
Confidence 65 4788999999999988987 457888889999999999999999999999999999999999999999999
Q ss_pred c-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe-EEEEe
Q 016446 247 R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKI 322 (389)
Q Consensus 247 s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~-~l~tl 322 (389)
+ |-|.||||+. =.-+..|+||+.- |.++.|..|-+ ++|||.| .|||+||+.+-+ .++|+
T Consensus 333 SrDtTFRLWDFReaI~sV~VFQGHtdt-----VTS~vF~~dd~-vVSgSDD-----------rTvKvWdLrNMRsplATI 395 (481)
T KOG0300|consen 333 SRDTTFRLWDFREAIQSVAVFQGHTDT-----VTSVVFNTDDR-VVSGSDD-----------RTVKVWDLRNMRSPLATI 395 (481)
T ss_pred ccCceeEeccchhhcceeeeecccccc-----eeEEEEecCCc-eeecCCC-----------ceEEEeeeccccCcceee
Confidence 9 9999999996 3468899999986 89999988755 7887764 899999998743 57888
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+--+ +++.|+.|--+++||---.+..|||+|.
T Consensus 396 RtdS-----------------------------------~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 396 RTDS-----------------------------------PANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ecCC-----------------------------------ccceeEeecCCceEEeccCCceEEEEec
Confidence 7543 7888999988889998888899999874
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.3e-25 Score=217.36 Aligned_cols=278 Identities=16% Similarity=0.212 Sum_probs=211.8
Q ss_pred eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC------------CcceeEee--eccc
Q 016446 36 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD------------SGFALFES--ESLK 101 (389)
Q Consensus 36 l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~------------~~~~l~~~--~~~~ 101 (389)
+..+..|+ -.+-+|+++||++.+.++|. + .+|-=|++.+|+-+ .+.++-.+ .|..
T Consensus 135 ~~~~~~H~-~s~~~vals~d~~~~fsask----~------g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~k 203 (479)
T KOG0299|consen 135 FRVIGKHQ-LSVTSVALSPDDKRVFSASK----D------GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVK 203 (479)
T ss_pred ceeecccc-CcceEEEeeccccceeecCC----C------cceeeeehhcCcccccccccchhhhhccCCCCcccccccc
Confidence 34455554 79999999999999999754 3 34444777777642 11111111 4556
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
++..+|.| |||++||+|+.|.-|.||+..+++.+++++ .+.|.+++|-. -..|.++ +.|.+||+|+++.-..+
T Consensus 204 eil~~avS-~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~---s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 204 EILTLAVS-SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSA---SADRSVKVWSIDQLSYV 279 (479)
T ss_pred eeEEEEEc-CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeee---ecCCceEEEehhHhHHH
Confidence 67789998 899999999999999999999999998876 46899999993 3334343 56789999999988888
Q ss_pred EEEeecCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
.+|-+|+..|..+..+. -++.++ |+.|+|+|||++ .-+...++.+|...+.+|+|=.+-. |+||| ||.|-||++
T Consensus 280 etlyGHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSL 355 (479)
T ss_pred HHHhCCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeee
Confidence 99999999999999863 466666 669999999999 5566667899999999999987776 56888 999999998
Q ss_pred C-CcEEEEec-cCcCCcCCC-------CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC----eEEEEec
Q 016446 257 R-GELVTSFE-DHLLWHPDC-------NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG----KCLAKIN 323 (389)
Q Consensus 257 ~-G~~l~tl~-gh~~~~~~~-------~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg----~~l~tl~ 323 (389)
. -+.+.+.. .|... ++. =|++||..|...++||||. +|.||||-+.+| +++..|.
T Consensus 356 ~KKkplf~~~~AHgv~-~~~~~~~~~~Witsla~i~~sdL~asGS~-----------~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVI-PELDPVNGNFWITSLAVIPGSDLLASGSW-----------SGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred cccCceeEeecccccc-CCccccccccceeeeEecccCceEEecCC-----------CCceEEEEecCCccccceeeecc
Confidence 6 55554433 23211 110 1789999999999999876 499999999888 3344443
Q ss_pred CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 324 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 324 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
-- ..|++|+|+++|+.|+.|-
T Consensus 424 ~~-----------------------------------GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 424 LV-----------------------------------GFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cc-----------------------------------cEEEEEEEccCCCEEEEec
Confidence 11 3899999999999776664
No 92
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.5e-25 Score=211.24 Aligned_cols=302 Identities=15% Similarity=0.221 Sum_probs=220.6
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
+-+|+.|... +-+++++|-|+|.+||.+++|+||.+..||. ..|+||.|+|.|+.++++| -| .++.|
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~-GSVNsikfh~s~~L~lTaS----GD------~taHI 216 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHT-GSVNSIKFHNSGLLLLTAS----GD------ETAHI 216 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccc-cceeeEEeccccceEEEcc----CC------cchHH
Confidence 4567777776 6799999999999999999999999999985 9999999999999999965 44 45556
Q ss_pred eE------eccCCCCCcceeEeeecccCceeEEEecCCCeEEE-E-ecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc
Q 016446 81 EY------IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT-Y-SAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS 150 (389)
Q Consensus 81 ~~------i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~La-s-~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS 150 (389)
|- ++...... .+.+ ...++-+..+.+.+- + -++..|||+ ++..|. ...|-+..+=
T Consensus 217 W~~av~~~vP~~~a~~-------~hSs-EeE~e~sDe~~~d~d~~~~sD~~tiRv-------Pl~~ltgH~~vV~a~dWL 281 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPS-------DHSS-EEEEEHSDEHNRDTDSSEKSDGHTIRV-------PLMRLTGHRAVVSACDWL 281 (481)
T ss_pred HHHhhcCcCCCCCCCC-------CCCc-hhhhhcccccccccccccccCCceeee-------eeeeeeccccceEehhhh
Confidence 65 22211100 0000 011222211111110 0 112235543 344444 4566666666
Q ss_pred -CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCC-eEEEEcccC
Q 016446 151 -PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA-ELMEVSRTE 227 (389)
Q Consensus 151 -~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg-~~~~~l~gh 227 (389)
.|+++++++ -|.|..|||++||+.++.|.||.+...-+.-. | .++|+. +|.|-|.||||++.. ..+.+|.||
T Consensus 282 ~gg~Q~vTaS---WDRTAnlwDVEtge~v~~LtGHd~ELtHcstH-p-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH 356 (481)
T KOG0300|consen 282 AGGQQMVTAS---WDRTANLWDVETGEVVNILTGHDSELTHCSTH-P-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH 356 (481)
T ss_pred cCcceeeeee---ccccceeeeeccCceeccccCcchhccccccC-C-cceEEEEeccCceeEeccchhhcceeeeeccc
Confidence 677887764 45899999999999999999998877777665 3 556655 679999999999843 236789999
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
++.|.++.|.-|.+ ++||+ |.|||+||+. ...+.|+.-... ++.|++|.-+.+||-- .|
T Consensus 357 tdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~------~NRvavs~g~~iIAiP-hD---------- 418 (481)
T KOG0300|consen 357 TDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSP------ANRVAVSKGHPIIAIP-HD---------- 418 (481)
T ss_pred ccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCc------cceeEeecCCceEEec-cC----------
Confidence 99999999998876 56788 9999999995 567888875433 6899999999999874 44
Q ss_pred CCeEEEEeCCCCeEEEEec-----CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC--CEEEE
Q 016446 305 AGSINVSSILTGKCLAKIN-----ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER--NEIYT 377 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl~-----gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg--~~LaS 377 (389)
...|||+|+ +|+.+..|. ||. .-|.++||+.+- .-|.+
T Consensus 419 NRqvRlfDl-nG~RlaRlPrtsRqgHr----------------------------------RMV~c~AW~eehp~cnLft 463 (481)
T KOG0300|consen 419 NRQVRLFDL-NGNRLARLPRTSRQGHR----------------------------------RMVTCCAWLEEHPACNLFT 463 (481)
T ss_pred CceEEEEec-CCCccccCCcccccccc----------------------------------eeeeeeeccccCccccccc
Confidence 378999996 588887775 454 689999998765 46889
Q ss_pred ecCCCcEEEcc
Q 016446 378 GNRHGLVHVWS 388 (389)
Q Consensus 378 gs~D~tIrlW~ 388 (389)
++.|..+-=|.
T Consensus 464 cGFDR~v~gW~ 474 (481)
T KOG0300|consen 464 CGFDRMVAGWK 474 (481)
T ss_pred ccccceeeeeE
Confidence 99999998886
No 93
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=9.7e-27 Score=241.07 Aligned_cols=218 Identities=13% Similarity=0.226 Sum_probs=191.5
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEE--ecCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCc
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 187 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~t--l~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~ 187 (389)
..++.+++|+.|..+-||....-.++.. +|...|.+|.|++ ..+||++ ..+++||+||++.++.+++|.+|...
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaag---sasgtiK~wDleeAk~vrtLtgh~~~ 114 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAG---SASGTIKVWDLEEAKIVRTLTGHLLN 114 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccc---ccCCceeeeehhhhhhhhhhhccccC
Confidence 4578999999999999999876666654 4567899999994 5555543 45689999999999999999999999
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEec
Q 016446 188 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 265 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~ 265 (389)
+.+|+|+ |.+.+.+.++.|..+++||.+..-|..+..+|...|..+.|+|||++++++. |.++||||+. |+++.+|+
T Consensus 115 ~~sv~f~-P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 115 ITSVDFH-PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred cceeeec-cceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 9999998 7799998899999999999999999999999999999999999999999998 8999999996 99999999
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
+|... |.++.|.|..-.|++||. |+|||+||++|=+.+-......
T Consensus 194 ~~e~~-----v~sle~hp~e~Lla~Gs~-----------d~tv~f~dletfe~I~s~~~~~------------------- 238 (825)
T KOG0267|consen 194 SHEGK-----VQSLEFHPLEVLLAPGSS-----------DRTVRFWDLETFEVISSGKPET------------------- 238 (825)
T ss_pred ccccc-----ccccccCchhhhhccCCC-----------CceeeeeccceeEEeeccCCcc-------------------
Confidence 99977 789999999999999865 5999999998777665554443
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEecCCC
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 382 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~ 382 (389)
..|.+++|+|||+.+++|-.+.
T Consensus 239 ---------------~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 239 ---------------DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ---------------CCceeeeecCCceeeecCchhh
Confidence 5899999999999999997653
No 94
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.93 E-value=7.4e-22 Score=186.58 Aligned_cols=318 Identities=18% Similarity=0.301 Sum_probs=238.6
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccce-eeeeeecCCcceEEEEEE-eeCCCEEEEEEEeecCCCcceeeeee
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR-RICFLNVSPDEVIRSLFY-NKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~-~l~tl~~~~~~~v~sv~~-spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
...|..+.|. +..++..+.|+.+++|+...+. .+..+.+.+...+..+.+ ++++..++... +..| ..+
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d------~~~ 136 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS--SSLD------GTV 136 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEecc--CCCC------ccE
Confidence 3467778887 8888889999999999997666 788888855337788888 88888333321 2336 678
Q ss_pred eEeEecc-CCCCCcceeEeeecccCceeEEEecCCCeEEEEecC-CCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-Cc
Q 016446 79 KIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GI 153 (389)
Q Consensus 79 ~l~~i~~-g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~-D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~ 153 (389)
++|++.. +.. ...+ ..+...+..++|+ |+++.+++++. |+++++|++.++..+.++. ...|.+++|+| +.
T Consensus 137 ~~~~~~~~~~~--~~~~--~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 137 KLWDLSTPGKL--IRTL--EGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred EEEEecCCCeE--EEEE--ecCcccEEEEEEC-CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc
Confidence 8888765 332 1111 2344445679998 89999999986 9999999998888887776 46899999995 55
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEE-EEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEEcccCCCce
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLK-VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTP 231 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~-tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-~~~l~gh~~~v 231 (389)
.++++ .+.|++|++||..+++++. .+.+|.... -..|+ +++..+++++.|+++++||+..... +..+.+|...+
T Consensus 212 ~~~~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v 287 (466)
T COG2319 212 LLIAS--GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287 (466)
T ss_pred eEEEE--ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccE
Confidence 34333 4667899999999999999 688776664 33666 5666777789999999999997664 55557899999
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEec--cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 232 SAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~--gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
.++.|+|++..+++++ |+++++||.. +....... .|... |..+.|+|++..++.+.. .|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----------~d~~ 352 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP-----VSSLSFSPDGSLLVSGGS----------DDGT 352 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc-----eEEEEECCCCCEEEEeec----------CCCc
Confidence 9999999999999987 9999999987 66665555 77663 789999555466666532 3589
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEE-ecCCCcEEE
Q 016446 308 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRHGLVHV 386 (389)
Q Consensus 308 IklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaS-gs~D~tIrl 386 (389)
+++|++...........+. .+..+.|++ ....++ ++.++.+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~ 396 (466)
T COG2319 353 IRLWDLRTGKPLKTLEGHS-----------------------------------NVLSVSFSP-DGRVVSSGSTDGTVRL 396 (466)
T ss_pred EEeeecCCCceeEEecCCc-----------------------------------eEEEEEECC-CCCEEEEecCCCceEE
Confidence 9999998877333333332 388999999 555555 789999999
Q ss_pred cc
Q 016446 387 WS 388 (389)
Q Consensus 387 W~ 388 (389)
|+
T Consensus 397 ~~ 398 (466)
T COG2319 397 WD 398 (466)
T ss_pred Ee
Confidence 97
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=7.2e-24 Score=199.18 Aligned_cols=283 Identities=13% Similarity=0.123 Sum_probs=231.0
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeee--cCCcceEEEEEEeeC-CCEEEEEEEeecCCCcceeeee
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLN--VSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~--~~~~~~v~sv~~spd-g~~l~s~s~~~~~d~~~l~~~~ 77 (389)
-.+|.+|.+. |-.+|+++.|+++++|+++-++.+..++ +|+ +.|.-+.+.|- .+.++++| .| +.
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~-~svdql~w~~~~~d~~atas----~d------k~ 88 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT-DSVDQLCWDPKHPDLFATAS----GD------KT 88 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC-cchhhheeCCCCCcceEEec----CC------ce
Confidence 4578888888 9999999999999999998776666543 443 67888888887 45777765 44 79
Q ss_pred eeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceE
Q 016446 78 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIML 155 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~l 155 (389)
|++||++++|+. -..+..+-...+.++ |+|++++-++.|..|-.-|..+.+.+.+.+ .-.|..+.++ ++.++
T Consensus 89 ir~wd~r~~k~~-----~~i~~~~eni~i~ws-p~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 89 IRIWDIRSGKCT-----ARIETKGENINITWS-PDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF 162 (313)
T ss_pred EEEEEeccCcEE-----EEeeccCcceEEEEc-CCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence 999999999982 222333333458998 899999999999999999999988877776 3579999999 77766
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEE
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 235 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~ 235 (389)
..... -++|.|..-..=+.+++++-|......|.|. |+|.++|+|+.|..+-|||++.--|++.+.-|..+|+.+.
T Consensus 163 flt~G---lG~v~ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlS 238 (313)
T KOG1407|consen 163 FLTNG---LGCVEILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLS 238 (313)
T ss_pred EEecC---CceEEEEeccccccccccccCCcceEEEEEC-CCCceEeeccccceeeccChhHhhhheeeccccCceEEEE
Confidence 55432 2699999988889999999998888999998 8999999999999999999999999999999999999999
Q ss_pred EcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 236 FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 236 fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
||.||++|||+| |.-|-|=+++ |+.+.... |.++ .++||+.|..-+||=++.|+-+++ .=+.|++||+-+
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~-----t~tVAWHPk~~LLAyA~ddk~~d~--~reag~vKiFG~ 310 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGP-----TFTVAWHPKRPLLAYACDDKDGDS--NREAGTVKIFGL 310 (313)
T ss_pred eccCcceeeccCccceEEeEecccCCeEEEee-ccCC-----ceeEEecCCCceeeEEecCCCCcc--ccccceeEEecC
Confidence 999999999999 9999999997 99887775 4444 589999999999999888742111 001268888754
Q ss_pred C
Q 016446 314 L 314 (389)
Q Consensus 314 ~ 314 (389)
.
T Consensus 311 ~ 311 (313)
T KOG1407|consen 311 S 311 (313)
T ss_pred C
Confidence 3
No 96
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.8e-25 Score=223.52 Aligned_cols=227 Identities=16% Similarity=0.201 Sum_probs=169.6
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE-E---EEec---CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCC
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-L---YSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED 174 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~-l---~tl~---~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~t 174 (389)
+.+++|+ |.|..++|||.|.+||+||++.-.. + +.|. .+.|++++||+ |.+|++.+.. ..+||.| +.
T Consensus 170 Vsal~~D-p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~---aqakl~D-Rd 244 (641)
T KOG0772|consen 170 VSALAVD-PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS---AQAKLLD-RD 244 (641)
T ss_pred EEEeeec-CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC---cceeEEc-cC
Confidence 5678997 8999999999999999999864331 2 2232 57899999994 5544444322 4799999 56
Q ss_pred CeEEEEE-------------eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEEc-----ccCCCceEEEE
Q 016446 175 GTVLKVF-------------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVS-----RTEFMTPSAFI 235 (389)
Q Consensus 175 G~~l~tl-------------~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg-~~~~~l-----~gh~~~v~sv~ 235 (389)
|..+..+ +||...+.+..|.|..-+.++++++|+|+||||+..- +-++++ .|-.-.|.+++
T Consensus 245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee
Confidence 6666544 4677778899998555588999999999999999753 334443 33445789999
Q ss_pred EcCCCcEEEEEc-CCeEEEEeCCCcE----EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEE
Q 016446 236 FLYENQLFLTFR-NRTVAVWNFRGEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 310 (389)
Q Consensus 236 fspdg~~laS~s-D~tIklWd~~G~~----l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIkl 310 (389)
|+|||++||+|. ||.|++|+..+.. ...=..|... ..|.+|+||+||++|+|-+. |+++|+
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g---~~Itsi~FS~dg~~LlSRg~-----------D~tLKv 390 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG---QDITSISFSYDGNYLLSRGF-----------DDTLKV 390 (641)
T ss_pred cCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC---CceeEEEeccccchhhhccC-----------CCceee
Confidence 999999999998 9999999974321 2233467653 23899999999999999766 489999
Q ss_pred EeCCC-CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecC
Q 016446 311 SSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 311 Wd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~ 380 (389)
||+.+ .+||.+..|-... -+-+.++||||.+.|++|..
T Consensus 391 WDLrq~kkpL~~~tgL~t~--------------------------------~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTP--------------------------------FPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred eeccccccchhhhcCCCcc--------------------------------CCCCccccCCCceEEEeccc
Confidence 99975 4566555443210 25567899999999999974
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.1e-25 Score=226.95 Aligned_cols=237 Identities=13% Similarity=0.155 Sum_probs=187.9
Q ss_pred eCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcce-eEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCC
Q 016446 54 KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA-LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK 131 (389)
Q Consensus 54 pdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~-l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~ 131 (389)
|.+++|.+ |+.| .+|++|++.+-.--+..+ +-. ..|..|+-.++.. -+|+.|+|+|.|-|||+|+..
T Consensus 35 ~~~ryLfT----gGRD------g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~-~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 35 PNGRYLFT----GGRD------GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC-GNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred CCCceEEe----cCCC------ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh-cCCCceEEecCCceEEEeecc
Confidence 45777988 7788 888999874433211111 111 2355666777775 689999999999999999988
Q ss_pred CC--eEEEEec--CCcEEEEEE-cC-CceEEEEecCCCCeeEEEEEcCCC--eEEEEE--------e-ecCCceeEEEEE
Q 016446 132 NY--TMLYSIS--DKHVQEIKI-SP-GIMLLIFNRSSSHVPLKILSIEDG--TVLKVF--------Y-HLLHRNKKVDFI 194 (389)
Q Consensus 132 ~g--~~l~tl~--~~~V~~vaf-S~-g~~la~~~~~s~d~tiklWd~~tG--~~l~tl--------~-~~~~~~~~v~f~ 194 (389)
.+ -|+.++. .+.|.++|+ -+ ...+|+ ++-|+.|+|||+.+| ++++++ . |+-..+++++-+
T Consensus 104 ~~~~~c~stir~H~DYVkcla~~ak~~~lvaS---gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 104 KDNTFCMSTIRTHKDYVKCLAYIAKNNELVAS---GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN 180 (735)
T ss_pred cCcchhHhhhhcccchheeeeecccCceeEEe---cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC
Confidence 66 4777774 578999999 45 445544 477899999999999 455544 2 555667777776
Q ss_pred ecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcC
Q 016446 195 EQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP 272 (389)
Q Consensus 195 ~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~ 272 (389)
+.+-.+++|+-.+-||+||.++++.+..|+||++-|+.+..++||+.++|+| ||||||||+. .+|+.|+.-|...
T Consensus 181 -~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~-- 257 (735)
T KOG0308|consen 181 -QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG-- 257 (735)
T ss_pred -CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc--
Confidence 4455677788999999999999999999999999999999999999999998 9999999996 8999999999875
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEE
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAK 321 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~t 321 (389)
||+++-+|+=+.+-||+. ||.|..=|+.+ .++...
T Consensus 258 ---VWaL~~~~sf~~vYsG~r-----------d~~i~~Tdl~n~~~~tli 293 (735)
T KOG0308|consen 258 ---VWALQSSPSFTHVYSGGR-----------DGNIYRTDLRNPAKSTLI 293 (735)
T ss_pred ---eEEEeeCCCcceEEecCC-----------CCcEEecccCCchhheEe
Confidence 899999999999999865 59999999887 444333
No 98
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=4.4e-24 Score=220.66 Aligned_cols=315 Identities=13% Similarity=0.117 Sum_probs=225.2
Q ss_pred cEEEEEee-----ccEEEEEecCceEEEEecccc---------------------eeee---------eee-cCCcceEE
Q 016446 5 KVIEIVAA-----RDIVFALAHSGVCAAFSRETN---------------------RRIC---------FLN-VSPDEVIR 48 (389)
Q Consensus 5 ~v~~i~~~-----~~~~a~~~~~gtiklW~~~tg---------------------~~l~---------tl~-~~~~~~v~ 48 (389)
.|++|-|+ .-+||++|.|.+||||++.-+ .++- ++. || .++|+
T Consensus 193 WIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH-eDWV~ 271 (764)
T KOG1063|consen 193 WIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH-EDWVY 271 (764)
T ss_pred hhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc-ccceE
Confidence 35566676 237899999999999996422 2332 233 65 59999
Q ss_pred EEEEeeCCCEEEEEEEeecCCCcceeeee------eeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC
Q 016446 49 SLFYNKNNDSLITVSVYASDNFSSLKCRS------TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 122 (389)
Q Consensus 49 sv~~spdg~~l~s~s~~~~~d~~~l~~~~------~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D 122 (389)
||-++|.+..|.|+|+ | .+|-+|. +.+-.++.|+.- +.. .| -++.-|+ ||+..+++-+.-
T Consensus 272 sv~W~p~~~~LLSASa----D-ksmiiW~pd~~tGiWv~~vRlGe~g-g~a------~G-F~g~lw~-~n~~~ii~~g~~ 337 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASA----D-KSMIIWKPDENTGIWVDVVRLGEVG-GSA------GG-FWGGLWS-PNSNVIIAHGRT 337 (764)
T ss_pred EEEEccchhhheeccc----C-cceEEEecCCccceEEEEEEeeccc-ccc------cc-eeeEEEc-CCCCEEEEeccc
Confidence 9999999988999765 4 3333332 122234555541 111 11 1357787 899999999999
Q ss_pred CeEEEEeCC-CCeEEE----EecCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcC----CCeEEEEEeecCCceeEEE
Q 016446 123 SIYKVFDLK-NYTMLY----SISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE----DGTVLKVFYHLLHRNKKVD 192 (389)
Q Consensus 123 ~tiklWdl~-~g~~l~----tl~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~----tG~~l~tl~~~~~~~~~v~ 192 (389)
|-.++|--+ ...... +.|-..|.+|++.| |.+|++. +.|+|-||+-.- +--++..-+-|++-..+++
T Consensus 338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv---s~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV---SLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEe---ccccceeeecccccccceeeecccccccccceeee
Confidence 999999832 233222 22346899999996 8999875 677999997633 1124444456777789999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECC-------------------------------------------CCe----EEE---
Q 016446 193 FIEQFNEKLLVKQENENLQILDVR-------------------------------------------NAE----LME--- 222 (389)
Q Consensus 193 f~~~~~~~l~~~s~D~tIklWd~~-------------------------------------------tg~----~~~--- 222 (389)
|.+ .+-++++|.+.+-+|+++.- +|. |.+
T Consensus 415 ~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 415 FVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred hcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 973 34455555566666776321 111 111
Q ss_pred --------------------------EcccCCCceEEEEEcCCCcEEEEEc-C-----CeEEEEeCC-CcEEEEeccCcC
Q 016446 223 --------------------------VSRTEFMTPSAFIFLYENQLFLTFR-N-----RTVAVWNFR-GELVTSFEDHLL 269 (389)
Q Consensus 223 --------------------------~l~gh~~~v~sv~fspdg~~laS~s-D-----~tIklWd~~-G~~l~tl~gh~~ 269 (389)
-|-||...|++++.+|+|+++||+. - .-|+||+.. ...++.|++|+.
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL 573 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL 573 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce
Confidence 1248999999999999999999995 2 368999996 667778999987
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe----EEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK----CLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~----~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
- |..++|||||+||+|.|+| .|+.||..+.+. ..+.++.|+
T Consensus 574 T-----VT~l~FSpdg~~LLsvsRD-----------Rt~sl~~~~~~~~~e~~fa~~k~Ht------------------- 618 (764)
T KOG1063|consen 574 T-----VTRLAFSPDGRYLLSVSRD-----------RTVSLYEVQEDIKDEFRFACLKAHT------------------- 618 (764)
T ss_pred E-----EEEEEECCCCcEEEEeecC-----------ceEEeeeeecccchhhhhccccccc-------------------
Confidence 5 8999999999999999875 999999875432 123355665
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.-||++.|+||++.+||+|+|++|++|.
T Consensus 619 ---------------RIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 619 ---------------RIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ---------------eEEEEcccCcccceeEEecCCceEEEEe
Confidence 7899999999999999999999999996
No 99
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=202.17 Aligned_cols=297 Identities=13% Similarity=0.151 Sum_probs=213.1
Q ss_pred EEEEeccccee-----eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc-ceeEeee
Q 016446 25 CAAFSRETNRR-----ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG-FALFESE 98 (389)
Q Consensus 25 iklW~~~tg~~-----l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~-~~l~~~~ 98 (389)
.+-|+.++.+. +.+|.+| ...|.+++||.||++||+++ .| +.|+||+++.=.. .. +-+...-
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH-~~~vt~~~FsSdGK~lat~~----~D------r~Ir~w~~~DF~~-~eHr~~R~nv 130 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGH-KKEVTDVAFSSDGKKLATIS----GD------RSIRLWDVRDFEN-KEHRCIRQNV 130 (420)
T ss_pred hhhhcccCCCcccchhhhhhhcc-CCceeeeEEcCCCceeEEEe----CC------ceEEEEecchhhh-hhhhHhhccc
Confidence 55676655443 3467776 58999999999999999965 66 8999999854111 00 0022222
Q ss_pred cccCceeEEEecCCCe-EEEEecCCCeEEEEeCC---CCeEEEEe--------c---CCcEEEEEEc-CCceEEEEecCC
Q 016446 99 SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLK---NYTMLYSI--------S---DKHVQEIKIS-PGIMLLIFNRSS 162 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~-~Las~s~D~tiklWdl~---~g~~l~tl--------~---~~~V~~vafS-~g~~la~~~~~s 162 (389)
..+||..|+|+ ||-+ ++++.-...+++++-+. +|..-+.+ + .-.|-++-+. .+.+|+++ +
T Consensus 131 e~dhpT~V~Fa-pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa---s 206 (420)
T KOG2096|consen 131 EYDHPTRVVFA-PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA---S 206 (420)
T ss_pred cCCCceEEEEC-CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe---c
Confidence 45688999998 7876 45666677789998763 34432221 1 1245556666 46677765 4
Q ss_pred CCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC---CCeE-----EEEcccCCCceEEE
Q 016446 163 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---NAEL-----MEVSRTEFMTPSAF 234 (389)
Q Consensus 163 ~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~---tg~~-----~~~l~gh~~~v~sv 234 (389)
.|.+|-||++. ||.|.++...+-.....+.+ |+|..+++++.---||+|.+- .|+. .-.|.||+..|.++
T Consensus 207 ~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~ 284 (420)
T KOG2096|consen 207 LDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAA 284 (420)
T ss_pred CCCcEEEEecC-CceeeeeccccccccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeee
Confidence 56899999998 99999987554455556665 788888888999999999863 3432 33579999999999
Q ss_pred EEcCCCcEEEEEc-CCeEEEEeCC-----Cc---EEEEecc--CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 235 IFLYENQLFLTFR-NRTVAVWNFR-----GE---LVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 235 ~fspdg~~laS~s-D~tIklWd~~-----G~---~l~tl~g--h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
+|||+.+.++|.| ||++||||.+ |+ +|++... |...- .=-.++.||.|+.||.++.
T Consensus 285 aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~---~p~RL~lsP~g~~lA~s~g---------- 351 (420)
T KOG2096|consen 285 AFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS---EPVRLELSPSGDSLAVSFG---------- 351 (420)
T ss_pred eeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC---CceEEEeCCCCcEEEeecC----------
Confidence 9999999999999 9999999964 22 3443310 11100 0137899999999998654
Q ss_pred CCCeEEEEeCCCCeEEEEecC-CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCC
Q 016446 304 SAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 382 (389)
Q Consensus 304 ~D~tIklWd~~tg~~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~ 382 (389)
.+++++..++|+-..++.. |. ..|.+++|+|||++|||++ |+
T Consensus 352 --s~l~~~~se~g~~~~~~e~~h~----------------------------------~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 352 --SDLKVFASEDGKDYPELEDIHS----------------------------------TTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred --CceEEEEcccCccchhHHHhhc----------------------------------CceeeEEecCCCcEEeeec-ce
Confidence 4899999999998777743 65 5899999999999999998 66
Q ss_pred cEEEccC
Q 016446 383 LVHVWSN 389 (389)
Q Consensus 383 tIrlW~~ 389 (389)
-+|+-.|
T Consensus 395 ~vrv~~n 401 (420)
T KOG2096|consen 395 YVRVIRN 401 (420)
T ss_pred eeeeecC
Confidence 6776543
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=8.5e-24 Score=210.53 Aligned_cols=265 Identities=14% Similarity=0.168 Sum_probs=212.2
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeee-eec----------------CCcceEEEEEEeeCCCEEEEEE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICF-LNV----------------SPDEVIRSLFYNKNNDSLITVS 63 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~t-l~~----------------~~~~~v~sv~~spdg~~l~s~s 63 (389)
+-.|..++++ +.++++++.+|+|--|+..+|+-.+. +.. .|...|-++|.||||++||+
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat-- 219 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT-- 219 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe--
Confidence 3467888888 77999999999999999999985511 111 24467899999999999999
Q ss_pred EeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--C
Q 016446 64 VYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D 141 (389)
Q Consensus 64 ~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~ 141 (389)
|+.| +.+-||+..+++..+ .|+ .+.+.|.+++|= ..-..|-|+|.|++||+|++..-..+-++. +
T Consensus 220 --gg~d------~~v~Iw~~~t~ehv~---~~~-ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 220 --GGRD------RHVQIWDCDTLEHVK---VFK-GHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred --cCCC------ceEEEecCcccchhh---ccc-ccccceeeeeee-cCccceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 7888 888999999988632 343 566677889995 444578899999999999998777776764 5
Q ss_pred CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE
Q 016446 142 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 221 (389)
Q Consensus 142 ~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~ 221 (389)
..|.+|....-.++++. ++.|.|+|||++.. +....+.+|.+.+..|+|. +.+.+++||.||.|-||++...+++
T Consensus 287 d~v~~IdaL~reR~vtV--GgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 287 DGVLGIDALSRERCVTV--GGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred cceeeechhcccceEEe--ccccceeEEEeccc-cceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCce
Confidence 68999988866666555 46789999999954 6667788888899999996 4789999999999999999998876
Q ss_pred EEcc------------cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C----cEEEEeccCcCCcCCCCeeEEEECC
Q 016446 222 EVSR------------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 222 ~~l~------------gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G----~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
-+.+ .|+.||++++..|...++|||+ +|-||||.++ | +++..|. -.++ |++++|++
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~Gf-----VNsl~f~~ 435 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGF-----VNSLAFSN 435 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccE-----EEEEEEcc
Confidence 5531 1234999999999999999999 9999999996 7 3555554 2233 89999999
Q ss_pred CCCEEEEEec
Q 016446 284 DQDLIISYCK 293 (389)
Q Consensus 284 dG~~laS~s~ 293 (389)
+|++|+.|..
T Consensus 436 sgk~ivagiG 445 (479)
T KOG0299|consen 436 SGKRIVAGIG 445 (479)
T ss_pred CCCEEEEecc
Confidence 9998887753
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.9e-24 Score=201.49 Aligned_cols=224 Identities=14% Similarity=0.205 Sum_probs=178.0
Q ss_pred CCeEEEEecCCCeEEEEeCCC-C--eEEEEec--CCcEEEEEEc-C--CceEEEEecCCCCeeEEEEEcCCCeE--EEEE
Q 016446 112 NGKVLTYSAQDSIYKVFDLKN-Y--TMLYSIS--DKHVQEIKIS-P--GIMLLIFNRSSSHVPLKILSIEDGTV--LKVF 181 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~-g--~~l~tl~--~~~V~~vafS-~--g~~la~~~~~s~d~tiklWd~~tG~~--l~tl 181 (389)
-|+.||+++.|++|||+.+.+ + +++.+|. .++||.|+|- | |.+||++ +-|+.|-||.-++|+- ++..
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc---sYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASC---SYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEe---ecCceEEEEecCCCchhhhhhh
Confidence 499999999999999999864 3 4667775 4699999999 7 9999876 5668999999888753 3455
Q ss_pred eecCCceeEEEEEecCCCeE-EEEeCCCcEEEEECCCC--e-EEEEcccCCCceEEEEEcCC---C-----------cEE
Q 016446 182 YHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNA--E-LMEVSRTEFMTPSAFIFLYE---N-----------QLF 243 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l-~~~s~D~tIklWd~~tg--~-~~~~l~gh~~~v~sv~fspd---g-----------~~l 243 (389)
..|...+++|+|.|..-+.+ +.++.||+|.|.+..+- - ..+....|.-.|++|.+.|- | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 67888999999984433444 44789999999988753 2 24456789999999999886 6 679
Q ss_pred EEEc-CCeEEEEeCC-C--cEEEEeccCcCCcCCCCeeEEEECCC----CCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 244 LTFR-NRTVAVWNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 244 aS~s-D~tIklWd~~-G--~~l~tl~gh~~~~~~~~v~sv~fSpd----G~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
+||+ |++||||+.+ + ++-++|++|.+| |+.||+.|. -.+|||+|.| |++-||-...
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw-----VRDVAwaP~~gl~~s~iAS~SqD-----------g~viIwt~~~ 242 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTLEGHKDW-----VRDVAWAPSVGLPKSTIASCSQD-----------GTVIIWTKDE 242 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhhhhcchh-----hhhhhhccccCCCceeeEEecCC-----------CcEEEEEecC
Confidence 9998 9999999996 4 456789999999 789999996 4689998765 9999997541
Q ss_pred --CeEEEEe-cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 316 --GKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 316 --g~~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
++--.|| .... ..||.+.||+-|..||-++.|+.|.||.
T Consensus 243 e~e~wk~tll~~f~----------------------------------~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFP----------------------------------DVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccCcccccccccCC----------------------------------cceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1111111 1111 5899999999999999999999999995
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.8e-23 Score=189.25 Aligned_cols=240 Identities=12% Similarity=0.152 Sum_probs=193.6
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCC------Ce-----E-E----EEec-CCcEEEEEEc-CCceEEEEec
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------YT-----M-L----YSIS-DKHVQEIKIS-PGIMLLIFNR 160 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~------g~-----~-l----~tl~-~~~V~~vafS-~g~~la~~~~ 160 (389)
-.-.+.+|+|. |+|.+-|-||..+|.|+-.... +- + . ++-| .+.|.++++| .|+.||++
T Consensus 31 dsqairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg-- 107 (350)
T KOG0641|consen 31 DSQAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG-- 107 (350)
T ss_pred chhheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec--
Confidence 33456789997 9999999999999999975321 11 0 1 1112 3589999999 58888875
Q ss_pred CCCCeeEEEEEcCCCeEE-----EEEeecCCceeEEEEEec--CCCeEEE-Ee-CCCcEEEEECCCCeEEEEcccCCCce
Q 016446 161 SSSHVPLKILSIEDGTVL-----KVFYHLLHRNKKVDFIEQ--FNEKLLV-KQ-ENENLQILDVRNAELMEVSRTEFMTP 231 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l-----~tl~~~~~~~~~v~f~~~--~~~~l~~-~s-~D~tIklWd~~tg~~~~~l~gh~~~v 231 (389)
+.|+|||+--.....|- ..|.-|.+.++.++|... .++.|++ ++ .|..|.+=|..+|+.++.+.||++.|
T Consensus 108 -sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 108 -SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred -CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 67899999766544443 356778899999999732 2345555 33 89999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEecc--CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 232 SAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~g--h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
-++ ++-+|-+++||+ |+|||.||+. ..|++++.. |........|.+|+..|.|++||||-.| .+
T Consensus 187 lal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d-----------ss 254 (350)
T KOG0641|consen 187 LAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD-----------SS 254 (350)
T ss_pred EEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC-----------Cc
Confidence 988 889999999999 9999999998 889998863 2221111248999999999999998765 67
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 308 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 308 IklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
-.|+|+.-|+.++.+..|+ ..|.+|.|||--++|.++|.|..|||=
T Consensus 255 c~lydirg~r~iq~f~phs----------------------------------adir~vrfsp~a~yllt~syd~~iklt 300 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQRFHPHS----------------------------------ADIRCVRFSPGAHYLLTCSYDMKIKLT 300 (350)
T ss_pred eEEEEeeCCceeeeeCCCc----------------------------------cceeEEEeCCCceEEEEecccceEEEe
Confidence 8899999999999999998 689999999999999999999999985
Q ss_pred c
Q 016446 388 S 388 (389)
Q Consensus 388 ~ 388 (389)
|
T Consensus 301 d 301 (350)
T KOG0641|consen 301 D 301 (350)
T ss_pred e
Confidence 5
No 103
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.92 E-value=2.4e-21 Score=183.12 Aligned_cols=281 Identities=17% Similarity=0.289 Sum_probs=216.4
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCC-CCCcceeEeeecccCceeEEE-ecCCCe-E
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK-PDSGFALFESESLKWPGFVEF-DDVNGK-V 115 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~-~~~~~~l~~~~~~~~~~~v~F-s~pdG~-~ 115 (389)
+..+ ...+.++.|.+.+..++.. +.| ..+.+|+...+. . ...+.. .....+..+.+ + +++. +
T Consensus 61 ~~~~-~~~i~~~~~~~~~~~~~~~----~~d------~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~-~~~~~~ 125 (466)
T COG2319 61 LRGH-EDSITSIAFSPDGELLLSG----SSD------GTIKLWDLDNGEKL--IKSLEG-LHDSSVSKLALSS-PDGNSI 125 (466)
T ss_pred eeec-cceEEEEEECCCCcEEEEe----cCC------CcEEEEEcCCCcee--EEEEec-cCCCceeeEEEEC-CCcceE
Confidence 3444 5899999999999988884 456 788889887765 2 111111 11112334444 6 7787 6
Q ss_pred EEEecC-CCeEEEEeCCC-CeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeE
Q 016446 116 LTYSAQ-DSIYKVFDLKN-YTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 190 (389)
Q Consensus 116 Las~s~-D~tiklWdl~~-g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~ 190 (389)
++..+. |+++++||+.. +.....+. ...|..++|+| +..+++++. .|+++++|++.++..+.++.+|...+..
T Consensus 126 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred EeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CCCceEEEEcCCCceEEeeccCCCceEE
Confidence 666555 99999999987 56655554 57899999995 556665422 4799999999999999999999999999
Q ss_pred EEEEecCCCeEEEE-eCCCcEEEEECCCCeEEE-EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc-EEEEec
Q 016446 191 VDFIEQFNEKLLVK-QENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE-LVTSFE 265 (389)
Q Consensus 191 v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~-~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~-~l~tl~ 265 (389)
++|+ |++..++++ +.|++|++||...++++. .+.+|...+ --.|+|++.++++++ |+++++|+.. .. ++..+.
T Consensus 204 ~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 204 LAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 9999 667645555 899999999999999998 799999886 448999999898888 9999999996 33 366667
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec--CCCCCCCcccccCCCCCCCc
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN--ATNCSPKVDDELGSSSTGKS 343 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~--gH~~~~~~~~~~~~~~~~~~ 343 (389)
+|..+ |.++.|+|++..+++++. |+++++||+.++....... +|.
T Consensus 282 ~~~~~-----v~~~~~~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~~~~~~~~~~----------------- 328 (466)
T COG2319 282 GHSSS-----VLSVAFSPDGKLLASGSS-----------DGTVRLWDLETGKLLSSLTLKGHE----------------- 328 (466)
T ss_pred cCCcc-----EEEEEECCCCCEEEEeeC-----------CCcEEEEEcCCCceEEEeeecccC-----------------
Confidence 78655 799999999999999665 4789999999988877776 776
Q ss_pred cccccccceecccccccCCEEEEEECCCCCEEEEe-cCCCcEEEcc
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG-NRHGLVHVWS 388 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSg-s~D~tIrlW~ 388 (389)
..|..+.|+|++..++.+ ..|+.+++|+
T Consensus 329 -----------------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 329 -----------------GPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred -----------------CceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 368899995554556666 7889999986
No 104
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.1e-23 Score=219.47 Aligned_cols=244 Identities=13% Similarity=0.114 Sum_probs=190.0
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc--------CC---------------C-------
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR--------GK---------------P------- 88 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~--------g~---------------~------- 88 (389)
++..|.+.||++-|||||++||+ ++.| ..|+||-|.. +. +
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAs----aGeD------~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLAS----AGED------GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred cccccCCcEEEEEeCCCCceeee----cCCC------ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 45356799999999999999999 6788 8888888755 00 0
Q ss_pred ------C-------------CcceeEe-------eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-C
Q 016446 89 ------D-------------SGFALFE-------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D 141 (389)
Q Consensus 89 ------~-------------~~~~l~~-------~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~ 141 (389)
. .....|. .+|.+-|..+++| . .++|.|+|-|+|||||++..-+||.+|. .
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-K-n~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn 409 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-K-NNFLLSSSMDKTVRLWHPGRKECLKVFSHN 409 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheecccc-c-CCeeEeccccccEEeecCCCcceeeEEecC
Confidence 0 0000111 1245556678998 4 5699999999999999999888999997 5
Q ss_pred CcEEEEEEc--CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe
Q 016446 142 KHVQEIKIS--PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 219 (389)
Q Consensus 142 ~~V~~vafS--~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~ 219 (389)
+.|.+|+|+ |+.+++++ +-|+.||||++..-+...-..-+ .-|.+|.|. |+|+..++|+.+|.+++|+...-+
T Consensus 410 dfVTcVaFnPvDDryFiSG---SLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~-PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISG---SLDGKVRLWSISDKKVVDWNDLR-DLITAVCYS-PDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred CeeEEEEecccCCCcEeec---ccccceEEeecCcCeeEeehhhh-hhheeEEec-cCCceEEEEEeccEEEEEEccCCe
Confidence 789999999 48888876 56689999999887666544333 778999998 789999999999999999997666
Q ss_pred EEEEcc---------cCCCceEEEEEcCCC--cEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCE
Q 016446 220 LMEVSR---------TEFMTPSAFIFLYEN--QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 287 (389)
Q Consensus 220 ~~~~l~---------gh~~~v~sv~fspdg--~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~ 287 (389)
+..... .|. .|+.+-|.|.. ++|+|..|..|||+|.. -+++..|+|+..... =.+..|++||++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S---Q~~Asfs~Dgk~ 560 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS---QISASFSSDGKH 560 (712)
T ss_pred EEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc---ceeeeEccCCCE
Confidence 544321 133 79999997644 48888889999999996 788889998876421 257899999999
Q ss_pred EEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 288 IISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 288 laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
|+|+|+| .-|.||+..
T Consensus 561 IVs~seD-----------s~VYiW~~~ 576 (712)
T KOG0283|consen 561 IVSASED-----------SWVYIWKND 576 (712)
T ss_pred EEEeecC-----------ceEEEEeCC
Confidence 9999865 799999973
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=2.3e-23 Score=223.83 Aligned_cols=240 Identities=14% Similarity=0.136 Sum_probs=197.0
Q ss_pred ceeEEEecCCCeEEEEec--CCCeEEEEeCCC-C-----------eEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCe
Q 016446 103 PGFVEFDDVNGKVLTYSA--QDSIYKVFDLKN-Y-----------TMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHV 165 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s--~D~tiklWdl~~-g-----------~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~ 165 (389)
|++|..+ |||..+|+|+ .|+.+++|+... . +++.+. |...|.+|+|| ||++||++ ++|+
T Consensus 16 IfSIdv~-pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG---SDD~ 91 (942)
T KOG0973|consen 16 IFSIDVH-PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG---SDDR 91 (942)
T ss_pred EEEEEec-CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec---cCcc
Confidence 5679997 9999999999 899999998642 1 111222 23689999999 79999876 5678
Q ss_pred eEEEEEcCC------------------CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC
Q 016446 166 PLKILSIED------------------GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 227 (389)
Q Consensus 166 tiklWd~~t------------------G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh 227 (389)
-|.+|.-.. -++..+|.+|..-|..|+++ |++.+++++|.|++|-|||.++.++++++++|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccceEEEEccccceeeeeeecc
Confidence 999999762 13788999999999999998 68889999999999999999999999999999
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCC-CCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD-CNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~-~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
...|-.|+|-|-|++|||=+ |+|||+|+.. -.+.++..++-...+. .....+.+||||++||+.-. +-+.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA-------~n~~ 243 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA-------VNGG 243 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh-------ccCC
Confidence 99999999999999999999 9999999974 6666666655431111 13578899999999999742 3344
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCC-----CC------
Q 016446 305 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE-----RN------ 373 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpd-----g~------ 373 (389)
-.+|.|-+=.+=++-..|-||+ .+|..|+|+|- -+
T Consensus 244 ~~~~~IieR~tWk~~~~LvGH~----------------------------------~p~evvrFnP~lfe~~~~ng~~~~ 289 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLVGHS----------------------------------APVEVVRFNPKLFERNNKNGTSTQ 289 (942)
T ss_pred cceeEEEecCCceeeeeeecCC----------------------------------CceEEEEeChHHhccccccCCccC
Confidence 5689998876667788899998 59999999982 12
Q ss_pred ------EEEEecCCCcEEEcc
Q 016446 374 ------EIYTGNRHGLVHVWS 388 (389)
Q Consensus 374 ------~LaSgs~D~tIrlW~ 388 (389)
++|+||.|++|-||.
T Consensus 290 ~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 290 PNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred CCcceEEEEEecCCccEEEEe
Confidence 799999999999995
No 106
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=7.4e-23 Score=206.13 Aligned_cols=289 Identities=15% Similarity=0.205 Sum_probs=215.6
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe---eecccCceeEEEecCCCe
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE---SESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~---~~~~~~~~~v~Fs~pdG~ 114 (389)
+|.+| ...|-++++-|.|-.++| |+.| .++++||.+--.. ..+-|. ..-...+.+++|| |.|.
T Consensus 162 ~l~hg-tk~Vsal~~Dp~GaR~~s----Gs~D------y~v~~wDf~gMda--s~~~fr~l~P~E~h~i~sl~ys-~Tg~ 227 (641)
T KOG0772|consen 162 QLKHG-TKIVSALAVDPSGARFVS----GSLD------YTVKFWDFQGMDA--SMRSFRQLQPCETHQINSLQYS-VTGD 227 (641)
T ss_pred eccCC-ceEEEEeeecCCCceeee----cccc------ceEEEEecccccc--cchhhhccCcccccccceeeec-CCCC
Confidence 56655 589999999999999999 7899 9999999742222 111122 1122236789998 8888
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEe-c------------C--CcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCe-
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSI-S------------D--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGT- 176 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl-~------------~--~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~- 176 (389)
+|+..+....+||.|- .|..+..+ + + ..+.+..|.| -+.++++ +.|+|+||||+..-+
T Consensus 228 ~iLvvsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~---s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 228 QILVVSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC---SYDGTLRIWDVNNTKS 303 (641)
T ss_pred eEEEEecCcceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe---cCCCcEEEEecCCchh
Confidence 8777788889999995 66655433 1 1 3678888996 3444454 667999999998533
Q ss_pred EEEEEe---ecCC--ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe---EEEEcccCCC--ceEEEEEcCCCcEEEEE
Q 016446 177 VLKVFY---HLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFM--TPSAFIFLYENQLFLTF 246 (389)
Q Consensus 177 ~l~tl~---~~~~--~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~---~~~~l~gh~~--~v~sv~fspdg~~laS~ 246 (389)
-++.++ .... .+.+++|+ +++..||+++.||.|++|+..+.. ...+-..|.. .|.+|+||+||++|+|=
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred heeEEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence 233333 1122 34889998 788888899999999999974422 1333367887 99999999999999999
Q ss_pred c-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 247 R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 247 s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
+ |+++|+||++ .++|.+.+|-..+-+ -..++||||.++|++|..-. -+..-+++-++|-.|=+.++++.
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~---~tdc~FSPd~kli~TGtS~~-----~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFP---GTDCCFSPDDKLILTGTSAP-----NGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred cCCCceeeeeccccccchhhhcCCCccCC---CCccccCCCceEEEeccccc-----CCCCCceEEEEeccceeeEEEec
Confidence 9 9999999994 789988887665433 26789999999999986421 12234789999988888888876
Q ss_pred CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 324 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 324 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
--+ ..|..+.|+|-=+.|..|+.||+++++
T Consensus 455 i~~----------------------------------aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 455 IST----------------------------------ASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CCC----------------------------------ceEEEEeecchhhheeeecCCCceEEE
Confidence 543 478899999999999999999999986
No 107
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.3e-25 Score=229.75 Aligned_cols=219 Identities=12% Similarity=0.224 Sum_probs=183.6
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
+.+++....+-.+|+||... +..|...|.++.+- -+..++. ++.|..+-||.+.---++..|.+|..+|.+|
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~---Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVT---GGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh----hhhhhhhhceeeeeccceeecc---CCCceeeccccccCCchhheeeccCCcceee
Confidence 34455555566778888532 12233445555543 3444544 3566788899987777888899999999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcC
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL 269 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~ 269 (389)
.|. ++...|++|+.|||||+||++.++.+++|.||...+.+|.|+|-|.++|+++ |.-+++||.. --|..++.+|..
T Consensus 77 ~f~-~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFD-TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecC-cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 998 4566777788999999999999999999999999999999999999999999 9999999997 779999999875
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
. |..++|+|||+++++|++ |.++||||+..|+.+.++++|+
T Consensus 156 v-----v~~l~lsP~Gr~v~~g~e-----------d~tvki~d~~agk~~~ef~~~e----------------------- 196 (825)
T KOG0267|consen 156 V-----VDVLRLSPDGRWVASGGE-----------DNTVKIWDLTAGKLSKEFKSHE----------------------- 196 (825)
T ss_pred e-----eEEEeecCCCceeeccCC-----------cceeeeeccccccccccccccc-----------------------
Confidence 4 899999999999999865 4899999999999999999999
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|.+|.|+|-.-.|++||.|++||+||.
T Consensus 197 -----------~~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 197 -----------GKVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred -----------ccccccccCchhhhhccCCCCceeeeecc
Confidence 48999999999999999999999999984
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=5.3e-23 Score=203.77 Aligned_cols=231 Identities=14% Similarity=0.180 Sum_probs=195.5
Q ss_pred eeEEEecCCC--eEEEEecCCCeEEEEeCCCCeEEEEecCC--cEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEE
Q 016446 104 GFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 179 (389)
Q Consensus 104 ~~v~Fs~pdG--~~Las~s~D~tiklWdl~~g~~l~tl~~~--~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~ 179 (389)
+..+|. +.. ..+.+|+.|+++-+.|-..++.+.+++++ .|.+|.|+|....+.. ++.|..||+|.+.+-.+..
T Consensus 221 gi~ald-~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~--aSad~~i~vws~~~~s~~~ 297 (506)
T KOG0289|consen 221 GITALD-IIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVIT--ASADEIIRVWSVPLSSEPT 297 (506)
T ss_pred CeeEEe-ecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheee--cCCcceEEeeccccccCcc
Confidence 345665 444 68899999999999999899988888764 7999999965544443 4667899999999988888
Q ss_pred EEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc--CCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 180 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 180 tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g--h~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
...-|...|..+... |.++++++++.|+++-.-|+++|.++..... ..-.+.+.+|+|||-+|++|. |+.|||||+
T Consensus 298 ~~~~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 888888999999987 7899999999999999999999998776433 234589999999999999998 999999999
Q ss_pred C-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCccccc
Q 016446 257 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 335 (389)
Q Consensus 257 ~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~ 335 (389)
. +.-+..|.||.++ |.+|+||.+|-|||+++.| +.|||||++--+..+++.-.+.
T Consensus 377 ks~~~~a~Fpght~~-----vk~i~FsENGY~Lat~add-----------~~V~lwDLRKl~n~kt~~l~~~-------- 432 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGP-----VKAISFSENGYWLATAADD-----------GSVKLWDLRKLKNFKTIQLDEK-------- 432 (506)
T ss_pred CCccccccCCCCCCc-----eeEEEeccCceEEEEEecC-----------CeEEEEEehhhcccceeecccc--------
Confidence 6 8889999999998 8999999999999999875 7899999987676777654431
Q ss_pred CCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 336 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
..|.++.|++-|++|+.++.|=+|.+.
T Consensus 433 -------------------------~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 433 -------------------------KEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred -------------------------ccceeEEEcCCCCeEEeecceeEEEEE
Confidence 479999999999999999988777654
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=5.5e-24 Score=207.06 Aligned_cols=265 Identities=16% Similarity=0.216 Sum_probs=200.0
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcce
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 93 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~ 93 (389)
-++|+++.||.|||||+.+-+|+.++..|. ++|+.|.+.. ...++ .++| ++++.|-+. |.+. ..
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~-G~V~Gi~v~~--~~~~t----vgdD------KtvK~wk~~-~~p~--~t 143 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHE-GLVRGICVTQ--TSFFT----VGDD------KTVKQWKID-GPPL--HT 143 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeeccc-CceeeEEecc--cceEE----ecCC------cceeeeecc-CCcc--ee
Confidence 368999999999999999889999999875 8999999988 54566 3588 777777743 3331 11
Q ss_pred eEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcCC--ceEEEEecCCCCeeEE
Q 016446 94 LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG--IMLLIFNRSSSHVPLK 168 (389)
Q Consensus 94 l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~g--~~la~~~~~s~d~tik 168 (389)
... .... .+.-. --+...|++++ .|-|||..--.++.++. .+.|.+|.|+|. ..||++ ..|+.|-
T Consensus 144 ilg~s~~~----gIdh~-~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~---~sDrsIv 213 (433)
T KOG0268|consen 144 ILGKSVYL----GIDHH-RKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC---ASDRSIV 213 (433)
T ss_pred eecccccc----ccccc-cccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee---ccCCceE
Confidence 111 1111 12222 22456777774 69999997777887776 578999999984 455554 4568999
Q ss_pred EEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEEcCCCcEEEEEc
Q 016446 169 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 169 lWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fspdg~~laS~s 247 (389)
|+|+.+++.|+.+.- .-..+.|+|+ |..-.+.++++|..+-.+|++. .++++...+|...|.+|.|||.|+-|+|||
T Consensus 214 LyD~R~~~Pl~KVi~-~mRTN~Iswn-PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 214 LYDLRQASPLKKVIL-TMRTNTICWN-PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred EEecccCCccceeee-eccccceecC-ccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 999999999987762 3566899999 4667788899999999999986 456888999999999999999999999999
Q ss_pred -CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 248 -NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 248 -D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
|.+|||+.++ |.---+. |.-.- ..|.+|.||-|.||++|||.| +.||||-...-+-+..
T Consensus 292 yDksIRIf~~~~~~SRdiY--htkRM--q~V~~Vk~S~Dskyi~SGSdd-----------~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIY--HTKRM--QHVFCVKYSMDSKYIISGSDD-----------GNVRLWKAKASEKLGV 352 (433)
T ss_pred ccceEEEeecCCCcchhhh--hHhhh--heeeEEEEeccccEEEecCCC-----------cceeeeecchhhhcCC
Confidence 9999999996 5422111 11110 128999999999999998764 9999998654444433
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=199.62 Aligned_cols=276 Identities=12% Similarity=0.099 Sum_probs=219.5
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
..+.++...|--..+.+ |+.| ..+-+.|.+.++.. .+|. ++..-+.+|.|+ |+...++++|.|..
T Consensus 220 pgi~ald~~~s~~~ilT----GG~d------~~av~~d~~s~q~l---~~~~-Gh~kki~~v~~~-~~~~~v~~aSad~~ 284 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILT----GGED------KTAVLFDKPSNQIL---ATLK-GHTKKITSVKFH-KDLDTVITASADEI 284 (506)
T ss_pred CCeeEEeecCCCCccee----cCCC------CceEEEecchhhhh---hhcc-CcceEEEEEEec-cchhheeecCCcce
Confidence 45788888887555666 7788 78888887777652 2332 233335679997 89999999999999
Q ss_pred EEEEeCCCCeEEEEe--cCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC--ceeEEEEEecCCC
Q 016446 125 YKVFDLKNYTMLYSI--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH--RNKKVDFIEQFNE 199 (389)
Q Consensus 125 iklWdl~~g~~l~tl--~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~--~~~~v~f~~~~~~ 199 (389)
||+|.+....+.... |...|+.+...| |.+|+++ +.|++.-.-|+++|.++..-..-.. ...+.+|+ |||-
T Consensus 285 i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsA---s~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pDgL 360 (506)
T KOG0289|consen 285 IRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSA---SNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PDGL 360 (506)
T ss_pred EEeeccccccCccccccccccceeeeeccCCcEEEEe---cCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CCce
Confidence 999998766654333 568999999995 9999876 5678999999999999987763222 25888998 6776
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCee
Q 016446 200 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTN 277 (389)
Q Consensus 200 ~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~ 277 (389)
.+.+|..|+.+|+||++++..+..|.||+..|.+|+|+.+|=+||++. |+.||+||++ -+.++++.-.... .|.
T Consensus 361 ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~----~v~ 436 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK----EVN 436 (506)
T ss_pred EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc----cce
Confidence 777788999999999999999999999999999999999999999999 8889999998 7777777644332 279
Q ss_pred EEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC--CCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecc
Q 016446 278 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 355 (389)
Q Consensus 278 sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~--tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
++.|.+.|+||+.++.| =+|.+.+-. +=+|+..+.-|.
T Consensus 437 s~~fD~SGt~L~~~g~~-----------l~Vy~~~k~~k~W~~~~~~~~~s----------------------------- 476 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAGSD-----------LQVYICKKKTKSWTEIKELADHS----------------------------- 476 (506)
T ss_pred eEEEcCCCCeEEeecce-----------eEEEEEecccccceeeehhhhcc-----------------------------
Confidence 99999999999998643 445444422 445777777776
Q ss_pred cccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 356 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 356 ~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
...+.|.|..+-+.|+++|.|...||..
T Consensus 477 -----g~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 477 -----GLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred -----cccceeeecccceEEeeccchhheEEee
Confidence 4788999999999999999999998853
No 111
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.9e-22 Score=208.64 Aligned_cols=322 Identities=14% Similarity=0.171 Sum_probs=229.4
Q ss_pred EEEEeeccEEEEEecCceEEEEecccce--eeeeeecCCcceE-EEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 7 IEIVAARDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVI-RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 7 ~~i~~~~~~~a~~~~~gtiklW~~~tg~--~l~tl~~~~~~~v-~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
..|...-....+.+-|+++.+|+.++-+ |+..++......+ -++++.|+.++.+.+ -|+.+ ..+.|..-
T Consensus 105 ~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla--~Ggs~------~~v~~~s~ 176 (764)
T KOG1063|consen 105 VCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLA--CGGSK------FVVDLYSS 176 (764)
T ss_pred EEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEE--ecCcc------eEEEEecc
Confidence 3444444445555789999999997666 6667776654443 378888876655553 37777 66666553
Q ss_pred ccCCCCCcceeEe-eecccCceeEEEecCCC--eEEEEecCCCeEEEEeCCCCe---------------------EEEE-
Q 016446 84 RRGKPDSGFALFE-SESLKWPGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYT---------------------MLYS- 138 (389)
Q Consensus 84 ~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG--~~Las~s~D~tiklWdl~~g~---------------------~l~t- 138 (389)
..+++ +.+-. .+|..||.+++|..+-| -+|||+|+|..||||.+.-+. ++.+
T Consensus 177 ~~d~f---~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i 253 (764)
T KOG1063|consen 177 SADSF---ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI 253 (764)
T ss_pred CCcce---eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence 33332 22222 34777889999985544 589999999999999874222 1111
Q ss_pred -----------ecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC--CeEEEE-----EeecCCceeEEEEEecCCC
Q 016446 139 -----------ISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED--GTVLKV-----FYHLLHRNKKVDFIEQFNE 199 (389)
Q Consensus 139 -----------l~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t--G~~l~t-----l~~~~~~~~~v~f~~~~~~ 199 (389)
.|.+||.+|-++ ++..|+++ +.|+++-+|...+ |-=+-+ +.|..+..+...|+ |++.
T Consensus 254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSA---SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~-~n~~ 329 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSA---SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS-PNSN 329 (764)
T ss_pred EEEEehhhhhcCcccceEEEEEccchhhheec---ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc-CCCC
Confidence 134799999999 57577665 6679999997543 332222 22333456888998 6677
Q ss_pred eEEEEeCCCcEEEEE-CCCCeEEE--EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC---------------C--
Q 016446 200 KLLVKQENENLQILD-VRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR---------------G-- 258 (389)
Q Consensus 200 ~l~~~s~D~tIklWd-~~tg~~~~--~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~---------------G-- 258 (389)
.+++-+.-|-.++|- .+.+.+.+ ...||.+.|..|+|.|.|++|+|.+ |+|-||.-.- |
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD 409 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD 409 (764)
T ss_pred EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccc
Confidence 788889999999998 33344433 4689999999999999999999999 9999986211 1
Q ss_pred -cEE------------------EEec------------------------------------------------------
Q 016446 259 -ELV------------------TSFE------------------------------------------------------ 265 (389)
Q Consensus 259 -~~l------------------~tl~------------------------------------------------------ 265 (389)
+|+ +.|+
T Consensus 410 l~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~ 489 (764)
T KOG1063|consen 410 LTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA 489 (764)
T ss_pred ceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee
Confidence 111 1111
Q ss_pred ---------------------------------cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 266 ---------------------------------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 266 ---------------------------------gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
||.. .|.+++.||+|++|||+|..+. -+---|+||+
T Consensus 490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGy-----Ev~~l~~s~~gnliASaCKS~~------~ehAvI~lw~ 558 (764)
T KOG1063|consen 490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGY-----EVYALAISPTGNLIASACKSSL------KEHAVIRLWN 558 (764)
T ss_pred ecccccCchhccCCChHHHHHHhccchhhHHhccCce-----eEEEEEecCCCCEEeehhhhCC------ccceEEEEEe
Confidence 1221 5899999999999999997531 1224699999
Q ss_pred CCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 313 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 313 ~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..+-..++.|.+|+ -.|+.++|||||++|+|.|+|+++.||.
T Consensus 559 t~~W~~~~~L~~Hs----------------------------------LTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 559 TANWLQVQELEGHS----------------------------------LTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred ccchhhhheecccc----------------------------------eEEEEEEECCCCcEEEEeecCceEEeee
Confidence 98888888999999 4899999999999999999999999995
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.8e-22 Score=193.74 Aligned_cols=234 Identities=13% Similarity=0.153 Sum_probs=187.1
Q ss_pred eEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCc--eEEEEecCCCCeeE
Q 016446 94 LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGI--MLLIFNRSSSHVPL 167 (389)
Q Consensus 94 l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~--~la~~~~~s~d~ti 167 (389)
+|. +.|.+.+.+||-+ |.++||||.|.||+|+|+..-..+..+ |.+.|.++.|. |-. .|+++ +.|+.|
T Consensus 36 lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~---sdDG~i 109 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSG---SDDGHI 109 (362)
T ss_pred cccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeee---cCCCcE
Confidence 666 4577777888875 899999999999999999888777666 36789999999 532 66665 567899
Q ss_pred EEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEEcc-cCCCceEEEEEcCCCcEEEE
Q 016446 168 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 168 klWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg~~~~~l~-gh~~~v~sv~fspdg~~laS 245 (389)
-+|++...+++++|+.|.+.|..++.. |. ++||. -+.|+.+|+||+-+|+.-..++ .|.. ..|.|+|.|.+++-
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiH-PS-~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a--t~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIH-PS-GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA--TLVSWSPQGDHFVV 185 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEec-CC-CceEEEEcCCceeeeehhhcCccceeeccCCcc--eeeEEcCCCCEEEE
Confidence 999999999999999999999999998 44 45555 5899999999999988533322 2332 34999999999998
Q ss_pred EcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 246 FRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 246 ~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
+.-..|-+|.++ ..+...++...- +.++-|- ++.+|+.|.. |+.|++||...+.++..+.+
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~~~r------~l~~~~l-~~~~L~vG~d-----------~~~i~~~D~ds~~~~~~~~A 247 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIENPKR------ILCATFL-DGSELLVGGD-----------NEWISLKDTDSDTPLTEFLA 247 (362)
T ss_pred EeccEEEEEecccHhHhhhhhcccc------ceeeeec-CCceEEEecC-----------CceEEEeccCCCccceeeec
Confidence 887778899997 677766654321 2344442 6777777755 48999999988999999999
Q ss_pred CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEE--ECCCCCEEEEecCCCcEEEccC
Q 016446 325 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF--YDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 325 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sva--fSpdg~~LaSgs~D~tIrlW~~ 389 (389)
|+ ++|-+++ -.|++.+|+|+|.||.|++||.
T Consensus 248 H~----------------------------------~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 248 HE----------------------------------NRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred ch----------------------------------hheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 99 4777776 4789999999999999999984
No 113
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.9e-22 Score=200.58 Aligned_cols=265 Identities=12% Similarity=0.140 Sum_probs=194.5
Q ss_pred CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec--------cCCCCCcceeEeeecccCceeEEEecCCCe
Q 016446 43 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--------RGKPDSGFALFESESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 43 ~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~--------~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~ 114 (389)
|.+-|+.+.+-|....||.+ ++.. ..+.|||.. .|++..-.+|..|+.-+ ++++|++-.--
T Consensus 123 h~gEVnRaRymPQnp~iVAt---~t~~------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg--~glsWn~~~~g 191 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVAT---KTSS------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEG--YGLSWNRQQEG 191 (422)
T ss_pred CCccchhhhhCCCCCcEEEe---cCCC------CCEEEEEeccCCCcccccccCCCceEEEeecccc--cccccccccce
Confidence 45789999999999877763 4444 778899872 22333333566655433 45788743444
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEE
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 194 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~ 194 (389)
.|++++.|++|.+||++.+..- + ..+ .....+.+|...|..|+|.
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~---------------~------------~~~--------~p~~~~~~h~~~VeDV~~h 236 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKE---------------D------------KVV--------DPKTIFSGHEDVVEDVAWH 236 (422)
T ss_pred eEeeccCCCcEEEEeccccccC---------------C------------ccc--------cceEEeecCCcceehhhcc
Confidence 7888999999999998432210 0 011 2234566888999999999
Q ss_pred ecCCCeEEEEeCCCcEEEEECC--CCeEEEEcccCCCceEEEEEcC-CCcEEEEEc-CCeEEEEeCC--CcEEEEeccCc
Q 016446 195 EQFNEKLLVKQENENLQILDVR--NAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHL 268 (389)
Q Consensus 195 ~~~~~~l~~~s~D~tIklWd~~--tg~~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd~~--G~~l~tl~gh~ 268 (389)
+.+.+.+++.++|+.+.|||.+ +-++.+...+|...|++++|+| ++.+|||+| |+||+|||++ -+++.+|++|.
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~ 316 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE 316 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC
Confidence 6666777778999999999999 5667788899999999999998 667888998 9999999996 67999999999
Q ss_pred CCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccc
Q 016446 269 LWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 347 (389)
Q Consensus 269 ~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
.. |..|.|||+-. .|||++ .|+.+.+||+..=...++ -+ ...+
T Consensus 317 de-----v~~V~WSPh~etvLASSg-----------~D~rl~vWDls~ig~eq~---~e-----------------da~d 360 (422)
T KOG0264|consen 317 DE-----VFQVEWSPHNETVLASSG-----------TDRRLNVWDLSRIGEEQS---PE-----------------DAED 360 (422)
T ss_pred cc-----eEEEEeCCCCCceeEecc-----------cCCcEEEEeccccccccC---hh-----------------hhcc
Confidence 86 89999999754 556654 569999999863111111 01 1112
Q ss_pred cccceecccccccCCEEEEEECCCCC-EEEEecCCCcEEEccC
Q 016446 348 KSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 389 (389)
Q Consensus 348 ~~~~~~~~~~~~~~~V~svafSpdg~-~LaSgs~D~tIrlW~~ 389 (389)
.-.++.=+.+||...|....|+|+.. +|+|.++|+.+.||+.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 23444455667778999999999885 7899999999999973
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=2e-22 Score=192.22 Aligned_cols=269 Identities=16% Similarity=0.110 Sum_probs=199.4
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe--EE--EEe---------c----CCcEEEEEEc--CCceEEEEe
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--ML--YSI---------S----DKHVQEIKIS--PGIMLLIFN 159 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~l--~tl---------~----~~~V~~vafS--~g~~la~~~ 159 (389)
|.|.+.++...+..|++++||+.||.|-|||+++-. .. +++ | ...|.++.+= |.+++.+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts-- 119 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS-- 119 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec--
Confidence 445566777777789999999999999999997543 10 111 1 1357776666 4666644
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCC-CeE-EEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKL-LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~-~~l-~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
.+.|+|+|+||+.|-|...+|+- .+.|++-+.+|..- ..| |+|-.|-.|||=|+++|.+-++|.||.+.|.+|.|+
T Consensus 120 -sSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 -SSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred -ccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 46789999999999999888873 36677777764332 344 446699999999999999999999999999999999
Q ss_pred CCCcE-EEEEc-CCeEEEEeCC--CcEEEEeccCcC---------CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 238 YENQL-FLTFR-NRTVAVWNFR--GELVTSFEDHLL---------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 238 pdg~~-laS~s-D~tIklWd~~--G~~l~tl~gh~~---------~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
|-.++ ||||+ ||+||+||+. .-|+++|..|+. ..-...|+++||+.||.+|++.+.|
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd---------- 267 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD---------- 267 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc----------
Confidence 98886 56778 9999999996 468888988872 1112358999999999999998765
Q ss_pred CCeEEEEeCCCCeEEEEe-----------------cCCCCCCCcccccCCCCCCCcccccc--ccceecccccccCCEEE
Q 016446 305 AGSINVSSILTGKCLAKI-----------------NATNCSPKVDDELGSSSTGKSKKLNK--SSYIRSTVGEALEDITS 365 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl-----------------~gH~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~V~s 365 (389)
..+|+|+...|+-.-.- .+|. .+.++++-+++.+-..+-. -.+++++ |+..|.+
T Consensus 268 -~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s---~vfv~~p~~~~lall~~~sgs~ir~l~~---h~k~i~c 340 (397)
T KOG4283|consen 268 -DRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDS---DVFVLFPNDGSLALLNLLEGSFVRRLST---HLKRINC 340 (397)
T ss_pred -cceEEeecccCcccccccccccccccccceEEEeeccc---ceEEEEecCCeEEEEEccCceEEEeeec---ccceeeE
Confidence 78999999887631110 1222 3445555555444333333 2444444 4689999
Q ss_pred EEECCCCCEEEEecCCCcEEEcc
Q 016446 366 LFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 366 vafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+|-||=+.+.+|+.|+.|--|-
T Consensus 341 ~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 341 AAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred EeecCchhhhhccccCCcccccc
Confidence 99999999999999999998873
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=9.5e-22 Score=187.92 Aligned_cols=276 Identities=14% Similarity=0.090 Sum_probs=210.9
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc-CCCCCcceeEeeecccCceeEEEecCCCeEE
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVL 116 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~-g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L 116 (389)
.+....++.|-+|+|||.-+.++.+ ++.| .++|+|++.. |.+.. ... +++-+-+..|+|+ .||..+
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A---~SWD------~tVR~wevq~~g~~~~-ka~--~~~~~PvL~v~Ws-ddgskV 87 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAA---GSWD------GTVRIWEVQNSGQLVP-KAQ--QSHDGPVLDVCWS-DDGSKV 87 (347)
T ss_pred ecCCCcccchheeEeccccCceEEe---cccC------CceEEEEEecCCcccc-hhh--hccCCCeEEEEEc-cCCceE
Confidence 4556667899999999965555554 5788 8999999965 66532 111 3455667889998 899999
Q ss_pred EEecCCCeEEEEeCCCCeEEEE-ecCCcEEEEEEcCC---ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEE
Q 016446 117 TYSAQDSIYKVFDLKNYTMLYS-ISDKHVQEIKISPG---IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 192 (389)
Q Consensus 117 as~s~D~tiklWdl~~g~~l~t-l~~~~V~~vafS~g---~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~ 192 (389)
++|+-|+++|+|||.+++.... .|...|..+.|=++ +.|+++ |-|+|||.||++.-+.+.++.- ..+++...
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG---SWDKTlKfWD~R~~~pv~t~~L-PeRvYa~D 163 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG---SWDKTLKFWDTRSSNPVATLQL-PERVYAAD 163 (347)
T ss_pred EeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec---ccccceeecccCCCCeeeeeec-cceeeehh
Confidence 9999999999999999986644 46789999999842 356765 5669999999999999988872 35665555
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCeEEE--EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C--cEEEEecc
Q 016446 193 FIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G--ELVTSFED 266 (389)
Q Consensus 193 f~~~~~~~l~~~s~D~tIklWd~~tg~~~~--~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G--~~l~tl~g 266 (389)
.. ...++.+-.|+.|.+++++.+.... .-..-..++++|+.-+|++..|-|+ .|.+-|-.++ + +---+|+-
T Consensus 164 v~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 164 VL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred cc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 43 3466668899999999998765321 1122345789999999999999999 9999999996 6 33446666
Q ss_pred CcCC--cC--CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 267 HLLW--HP--DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 267 h~~~--~~--~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
|-.. +. -..|++|+|.|.-.+||+++. ||++..||-...+-|.+.+.|.
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-----------DGtf~FWDkdar~kLk~s~~~~---------------- 293 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-----------DGTFSFWDKDARTKLKTSETHP---------------- 293 (347)
T ss_pred eccCCCCCCceEEecceEeecccceEEEecC-----------CceEEEecchhhhhhhccCcCC----------------
Confidence 6531 11 134899999999999999754 6999999976666666666676
Q ss_pred ccccccccceecccccccCCEEEEEECCCCCEEEEe
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 378 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSg 378 (389)
++|++.+|+.+|.++|=+
T Consensus 294 ------------------qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 294 ------------------QPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ------------------CccceeEecCCCCEEEEE
Confidence 799999999999988754
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=7.3e-23 Score=205.59 Aligned_cols=283 Identities=14% Similarity=0.103 Sum_probs=225.6
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc-CCCCCcceeEeeecccCceeEEEecCCC
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNG 113 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~-g~~~~~~~l~~~~~~~~~~~v~Fs~pdG 113 (389)
.+++|+ |.+.|-.+++|.+.+.+-+ |+. +.|++|||.. |.-.....|=-...-.+++++... |||
T Consensus 412 q~~tL~--HGEvVcAvtIS~~trhVyT----gGk-------gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-pdg 477 (705)
T KOG0639|consen 412 QINTLA--HGEVVCAVTISNPTRHVYT----GGK-------GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-PDG 477 (705)
T ss_pred hhhhhc--cCcEEEEEEecCCcceeEe----cCC-------CeEEEeeccCCCCCCccccccccCcccceeeeEec-CCC
Confidence 455666 3489999999999998887 555 6899999833 322111111112234467788887 899
Q ss_pred eEEEEecCCCeEEEEeCCCCeEE--EEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCcee
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTML--YSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 189 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l--~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~ 189 (389)
+.|..|+.-.|+-||||....+. ..|. +-...++|+||+..++-+ +-.|+.|++||+++-.+++.|+||++...
T Consensus 478 rtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFs--ccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 478 RTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFS--CCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred ceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeee--eccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999999999999999877653 2333 346789999976666544 23468999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC--CceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEecc
Q 016446 190 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF--MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED 266 (389)
Q Consensus 190 ~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~--~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~g 266 (389)
+|..+ .+|.+|=+|+-|.|||.||+++|+.++. |. .+|.++-..|++..||.|- .+.+.|-..+|....-|.-
T Consensus 556 cIdis-~dGtklWTGGlDntvRcWDlregrqlqq---hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl 631 (705)
T KOG0639|consen 556 CIDIS-KDGTKLWTGGLDNTVRCWDLREGRQLQQ---HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL 631 (705)
T ss_pred eEEec-CCCceeecCCCccceeehhhhhhhhhhh---hhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecc
Confidence 99998 7899999999999999999999887653 43 4788999999999999997 8899888888776666655
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccc
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
|..- |.++.|++-||+.||.+.| +-+..|...-|..+...+.-
T Consensus 632 heSc-----VLSlKFa~cGkwfvStGkD-----------nlLnawrtPyGasiFqskE~--------------------- 674 (705)
T KOG0639|consen 632 HESC-----VLSLKFAYCGKWFVSTGKD-----------NLLNAWRTPYGASIFQSKES--------------------- 674 (705)
T ss_pred cccE-----EEEEEecccCceeeecCch-----------hhhhhccCccccceeecccc---------------------
Confidence 6653 8999999999999998876 79999988777776655543
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|.++..|-|.++|+|||.|+...++.
T Consensus 675 --------------SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 675 --------------SSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred --------------CcceeeeeccCceEEEecCCCcceEEEE
Confidence 3899999999999999999998877764
No 117
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=195.78 Aligned_cols=283 Identities=10% Similarity=0.152 Sum_probs=218.6
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecc--cceeeeeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeee
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRE--TNRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~--tg~~l~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~ 78 (389)
+.|.+|-|- .+.+.++..||+++||.++ ++..|..+.... -+|.+..|.|+|+ .+++ ++.. .-.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~-fPi~~a~f~p~G~~~i~~----s~rr------ky~ 282 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK-FPIQKAEFAPNGHSVIFT----SGRR------KYL 282 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc-CccceeeecCCCceEEEe----cccc------eEE
Confidence 567888887 8999999999999999975 234777888764 7999999999999 5555 4566 778
Q ss_pred eEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEE
Q 016446 79 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLL 156 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la 156 (389)
+.||+.++++....++.+++ ...+...+.| |++++||..+..|-|.|=..+|++++.+++ .+.|.++.|| +|..|.
T Consensus 283 ysyDle~ak~~k~~~~~g~e-~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVE-EKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELL 360 (514)
T ss_pred EEeeccccccccccCCCCcc-cchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEE
Confidence 89999999985444444433 1123346677 899999999999999999999999999998 5788999999 898887
Q ss_pred EEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEE
Q 016446 157 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 236 (389)
Q Consensus 157 ~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f 236 (389)
+++ .++.|.+||+.+-.|++++.. ||-| .=.+++.
T Consensus 361 ~~~---~~GeV~v~nl~~~~~~~rf~D-----------------------~G~v-------------------~gts~~~ 395 (514)
T KOG2055|consen 361 ASG---GTGEVYVWNLRQNSCLHRFVD-----------------------DGSV-------------------HGTSLCI 395 (514)
T ss_pred EEc---CCceEEEEecCCcceEEEEee-----------------------cCcc-------------------ceeeeee
Confidence 763 346899999998888888872 1111 1256788
Q ss_pred cCCCcEEEEEc-CCeEEEEeCC-------CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 237 LYENQLFLTFR-NRTVAVWNFR-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 237 spdg~~laS~s-D~tIklWd~~-------G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
|++|++||+|| -|-|-|||.+ -+.++++..-... |.++.|+||+|+||.+|.- .+..+
T Consensus 396 S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~-----Itsl~Fn~d~qiLAiaS~~---------~knal 461 (514)
T KOG2055|consen 396 SLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA-----ITSLQFNHDAQILAIASRV---------KKNAL 461 (514)
T ss_pred cCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee-----eeeeeeCcchhhhhhhhhc---------cccce
Confidence 99999999999 8999999943 2355666543333 8999999999999999864 46889
Q ss_pred EEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 309 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 309 klWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
||=.+.+-. ++. +.+ +-+.....|+|++|||.|-+||-|.++|.|+||.
T Consensus 462 rLVHvPS~T---VFs--------NfP--------------------~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 462 RLVHVPSCT---VFS--------NFP--------------------TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred EEEecccee---eec--------cCC--------------------CCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 998876422 222 111 1222336999999999999999999999999996
Q ss_pred C
Q 016446 389 N 389 (389)
Q Consensus 389 ~ 389 (389)
.
T Consensus 511 L 511 (514)
T KOG2055|consen 511 L 511 (514)
T ss_pred e
Confidence 3
No 118
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-20 Score=194.99 Aligned_cols=271 Identities=17% Similarity=0.173 Sum_probs=213.3
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
..|.++|||.+.+.||. +-.+ ..|.||.+..+=+ ..+.+.-..-+++.+++|+ +|..|-|.+.+|+
T Consensus 26 s~I~slA~s~kS~~lAv----sRt~------g~IEiwN~~~~w~--~~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg~ 91 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAV----SRTD------GNIEIWNLSNNWF--LEPVIHGPEDRSIESLAWA--EGGRLFSSGLSGS 91 (691)
T ss_pred cceEEEEEeccCCceee----eccC------CcEEEEccCCCce--eeEEEecCCCCceeeEEEc--cCCeEEeecCCce
Confidence 68999999999998888 3455 6888999876543 2223332344567789997 4667888999999
Q ss_pred EEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEE--EeecCCceeEEEEEecCCC
Q 016446 125 YKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV--FYHLLHRNKKVDFIEQFNE 199 (389)
Q Consensus 125 iklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~t--l~~~~~~~~~v~f~~~~~~ 199 (389)
|.-||+.+++.++.+. ++.||+++.+| +..+++++ +|+-+.+.++.+++.... |.-..+++.+|.|. +++-
T Consensus 92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc---ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~-~~~~ 167 (691)
T KOG2048|consen 92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC---DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN-PTGT 167 (691)
T ss_pred EEEEecccCceeEEecCCCcceeEEEeCCccceEEeec---CCceEEEEecCCceEEEEeecccccceEEEEEec-CCcc
Confidence 9999999999998886 68999999996 77888774 346888999988887643 33334889999998 7778
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEE-------cc-cCCCceEEEEEcCCCcEEEEE-cCCeEEEEeCC-CcEEEEeccCcC
Q 016446 200 KLLVKQENENLQILDVRNAELMEV-------SR-TEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLL 269 (389)
Q Consensus 200 ~l~~~s~D~tIklWd~~tg~~~~~-------l~-gh~~~v~sv~fspdg~~laS~-sD~tIklWd~~-G~~l~tl~gh~~ 269 (389)
+|++|+.|+-||+||++++..+.. +. +..--||+|.|..|+. |||| |-|+|+.||.. |.+++.+..|..
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiqS~~~h~a 246 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQSHSCHDA 246 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcchhhhhhhhhc
Confidence 899999999999999999987662 22 2455799999998886 5566 59999999997 999999999987
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE--EEE--ecCCCCCCCcccccCCCCCCCccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAK--INATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~--l~t--l~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
- |.+++..+++.++++++.| +.|-.....+++- +.. ...|.
T Consensus 247 d-----Vl~Lav~~~~d~vfsaGvd-----------~~ii~~~~~~~~~~wv~~~~r~~h~------------------- 291 (691)
T KOG2048|consen 247 D-----VLALAVADNEDRVFSAGVD-----------PKIIQYSLTTNKSEWVINSRRDLHA------------------- 291 (691)
T ss_pred c-----eeEEEEcCCCCeEEEccCC-----------CceEEEEecCCccceeeeccccCCc-------------------
Confidence 5 8999999999999999876 6666666554432 111 12333
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
..|.+++..++ .|+||+.|.++.+
T Consensus 292 ---------------hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 292 ---------------HDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred ---------------ccceeeeeecc--eEEecceeeEEEE
Confidence 58999999998 8999999998754
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.2e-22 Score=196.71 Aligned_cols=274 Identities=12% Similarity=0.084 Sum_probs=205.0
Q ss_pred EEEEecCce-EEEEecccceeeeeeecC-CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcce
Q 016446 16 VFALAHSGV-CAAFSRETNRRICFLNVS-PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 93 (389)
Q Consensus 16 ~a~~~~~gt-iklW~~~tg~~l~tl~~~-~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~ 93 (389)
+.+.+.|.. |..||+.||..+-++.+. .+..--.-+.++ ++++++. ... ..+.+|.+....... +.
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~--~yllsaq---~~r------p~l~vw~i~k~~~~~-q~ 77 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNN--EYLLSAQ---LKR------PLLHVWEILKKDQVV-QY 77 (476)
T ss_pred EeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhch--hheeeec---ccC------ccccccccCchhhhh-hh
Confidence 455566655 999999999988888876 211111222333 6666643 122 466677764333211 11
Q ss_pred eEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEE
Q 016446 94 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 94 l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklW 170 (389)
. -..+-+.+++=+ |+|.+|+.|..-+.+.+|.+.+|+++..++. ..|.++.|| ||.+|.++ +.|+-|.+|
T Consensus 78 ~---v~Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTg---skDg~V~vW 150 (476)
T KOG0646|consen 78 I---VLPGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITG---SKDGAVLVW 150 (476)
T ss_pred c---ccccceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEec---CCCccEEEE
Confidence 0 122234467665 8999999888999999999999999988875 479999999 78888775 567899999
Q ss_pred EcC---------CCeEEEEEeecCCceeEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC
Q 016446 171 SIE---------DGTVLKVFYHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240 (389)
Q Consensus 171 d~~---------tG~~l~tl~~~~~~~~~v~f~~~-~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg 240 (389)
.+. +-+.+..|.+|+-+|.++....- ...+++++|+|+||||||+..|.++.++. -...+.+++..|-.
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae 229 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAE 229 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccc
Confidence 864 34567788888888877766421 34789999999999999999999988754 33578999999999
Q ss_pred cEEEEEc-CCeEEEEeC-----------------CCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccC
Q 016446 241 QLFLTFR-NRTVAVWNF-----------------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 302 (389)
Q Consensus 241 ~~laS~s-D~tIklWd~-----------------~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~ 302 (389)
+.+-.|. +|.|-+-++ +++.++.|.||.+. ..|.++++|-||..|+||+.|
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~---~~ITcLais~DgtlLlSGd~d-------- 298 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE---SAITCLAISTDGTLLLSGDED-------- 298 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC---cceeEEEEecCccEEEeeCCC--------
Confidence 9998887 998876653 23456788999883 138999999999999999765
Q ss_pred CCCCeEEEEeCCCCeEEEEec
Q 016446 303 GSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 303 s~D~tIklWd~~tg~~l~tl~ 323 (389)
|+|.|||+.+-||++++.
T Consensus 299 ---g~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 299 ---GKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ---CCEEEEecchHHHHHHHh
Confidence 999999999999999987
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.4e-21 Score=204.29 Aligned_cols=235 Identities=11% Similarity=0.135 Sum_probs=190.1
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCC-eEEEEe--cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEE
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g-~~l~tl--~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl 181 (389)
.|.|. |+|..|.+++.|+.||+|+-..- +.-.++ ++..|.+++---+ .|+++ +.++||.+..+..|+.-..|
T Consensus 18 ~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~---s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 18 LICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTG---SEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred EEEEc-CCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEe---eccceEEEeeCCCCCcccee
Confidence 59997 99999999999999999996544 221222 4677888776644 56565 45689999999887744333
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 259 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~ 259 (389)
.-.+-+++.++|+ -+|..+|+||.|-.|||-++.++.....+++|..+|..|.|.|.+++||+++ ||+|++||++ |.
T Consensus 93 ~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 93 ARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred eeeeccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence 3223788999998 5678999999999999999999999999999999999999999999999999 9999999997 99
Q ss_pred EEEEeccCcCCcCC----CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCccccc
Q 016446 260 LVTSFEDHLLWHPD----CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 335 (389)
Q Consensus 260 ~l~tl~gh~~~~~~----~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~ 335 (389)
+..+|.+=.. ..+ ..+..++|+|+|-.+|..+. |++|++++..+.+...+|+....+
T Consensus 172 ~~~tl~~v~k-~n~~~~s~i~~~~aW~Pk~g~la~~~~-----------d~~Vkvy~r~~we~~f~Lr~~~~s------- 232 (933)
T KOG1274|consen 172 LSKTLTGVDK-DNEFILSRICTRLAWHPKGGTLAVPPV-----------DNTVKVYSRKGWELQFKLRDKLSS------- 232 (933)
T ss_pred hhhhcccCCc-cccccccceeeeeeecCCCCeEEeecc-----------CCeEEEEccCCceeheeecccccc-------
Confidence 9988876322 111 12567999999665665555 489999999999999999874421
Q ss_pred CCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 336 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..+..+.|||+|++||+++-||.|-|||.
T Consensus 233 -------------------------s~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 233 -------------------------SKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred -------------------------cceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 35899999999999999999999999983
No 121
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.6e-21 Score=184.36 Aligned_cols=251 Identities=14% Similarity=0.162 Sum_probs=179.4
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCe----EEEEe--cCCcEEEEEEc-C--CceEEEEecCCCCeeEEEEEcC
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSI--SDKHVQEIKIS-P--GIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~----~l~tl--~~~~V~~vafS-~--g~~la~~~~~s~d~tiklWd~~ 173 (389)
+..|.|+ +.|+.+|+||.|++|||||.+... |.... |+..|+.|.+- | ||.+|++ +.|+|++||.=+
T Consensus 16 ihdVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c---S~Drtv~iWEE~ 91 (361)
T KOG2445|consen 16 IHDVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATC---SYDRTVSIWEEQ 91 (361)
T ss_pred eeeeeec-ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEE---ecCCceeeeeec
Confidence 3479997 899999999999999999976443 33333 35789999999 6 9999987 566999999731
Q ss_pred ---------CCeEEEEEeecCCceeEEEEEecC-CCeEEEEeCCCcEEEEECCC-CeE-----EE-------EcccCCCc
Q 016446 174 ---------DGTVLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRN-AEL-----ME-------VSRTEFMT 230 (389)
Q Consensus 174 ---------tG~~l~tl~~~~~~~~~v~f~~~~-~~~l~~~s~D~tIklWd~~t-g~~-----~~-------~l~gh~~~ 230 (389)
.-..+.+|......+..|.|.|.. |=+||+.+.||++|||+.-. .++ .. .+..+...
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 223456777767888999998554 34566678999999997543 222 11 12245567
Q ss_pred eEEEEEcC---CCcEEEEEcCC------eEEEEeCC--C-cE--EEEeccCcCCcCCCCeeEEEECCC----CCEEEEEe
Q 016446 231 PSAFIFLY---ENQLFLTFRNR------TVAVWNFR--G-EL--VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYC 292 (389)
Q Consensus 231 v~sv~fsp---dg~~laS~sD~------tIklWd~~--G-~~--l~tl~gh~~~~~~~~v~sv~fSpd----G~~laS~s 292 (389)
-.+|.|+| .-++||.|+|. .++||... | ++ +.+|.+|..+ |.+|+|.|+ -+.||.++
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp-----I~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP-----IRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc-----ceeeeeccccCCceeeEEEee
Confidence 77888887 46789999865 99999984 5 33 5688899988 799999995 67899998
Q ss_pred cCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC
Q 016446 293 KAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 372 (389)
Q Consensus 293 ~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg 372 (389)
.| | |+||++..- +-...+.-..++ +.. .+=.....+-+.+|-..||.|.|+=-|
T Consensus 247 kD-----------g-v~I~~v~~~-~s~i~~ee~~~~---------~~~----~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 247 KD-----------G-VRIFKVKVA-RSAIEEEEVLAP---------DLM----TDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred cC-----------c-EEEEEEeec-cchhhhhcccCC---------CCc----cccceEEeeeccCCCCceEEEEEeeee
Confidence 75 7 999998631 110000000000 000 000123334445555799999999999
Q ss_pred CEEEEecCCCcEEEcc
Q 016446 373 NEIYTGNRHGLVHVWS 388 (389)
Q Consensus 373 ~~LaSgs~D~tIrlW~ 388 (389)
.+|+|.+.||+||||.
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
No 122
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.1e-21 Score=198.33 Aligned_cols=306 Identities=12% Similarity=0.121 Sum_probs=228.1
Q ss_pred cEEEEE--eeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 5 KVIEIV--AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 5 ~v~~i~--~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
.|+.|- ++|+.||+++.|||+|+|.+.||+|+++++.. +.|+||+|+|.+..=+.+.|.+ . .+-|-+
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAvA~~--~-------~~~ivn 470 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAVAVG--E-------CVLIVN 470 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEEEec--C-------ceEEeC
Confidence 455554 45999999999999999999999999999984 7999999999998544444432 2 111111
Q ss_pred eccCCCCCcceeEeeecccCceeEEEecCCCeEEEEe----cCCCeEEEEeCC---CCe---EEEEecCCcEEEEEEc-C
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS----AQDSIYKVFDLK---NYT---MLYSISDKHVQEIKIS-P 151 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~----s~D~tiklWdl~---~g~---~l~tl~~~~V~~vafS-~ 151 (389)
-.-|.-. .+. +.-.+|+++ ..|.++-.|.-. .++ |+..-+...|..|.++ .
T Consensus 471 p~~G~~~---------------e~~---~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 471 PIFGDRL---------------EVG---PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred ccccchh---------------hhc---chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 1222110 000 011122222 234567788743 222 4444457899999999 8
Q ss_pred CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCce
Q 016446 152 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP 231 (389)
Q Consensus 152 g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v 231 (389)
|.+||+-..++....|-|-++.-+...--|.-..+.+..|.|.+.....++++. ..|||||+..+++++.|.....+|
T Consensus 533 GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvKkL~tg~kwi 610 (733)
T KOG0650|consen 533 GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVKKLLTGSKWI 610 (733)
T ss_pred CceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--cceEEEehhHHHHHHHHhcCCeee
Confidence 999999988888788888888877776666544578899999843333333333 679999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 232 SAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
.+++.+|.|..|+.++ |+.+-..|++ .+..++|.-|... |.+|+|++-=-++||||.| |++
T Consensus 611 S~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a-----vr~Va~H~ryPLfas~sdD-----------gtv 674 (733)
T KOG0650|consen 611 SSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA-----VRSVAFHKRYPLFASGSDD-----------GTV 674 (733)
T ss_pred eeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh-----hhhhhhccccceeeeecCC-----------CcE
Confidence 9999999999999999 9999888886 5788999989876 7999999999999998765 899
Q ss_pred EEEe------CCCCe---EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 309 NVSS------ILTGK---CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 309 klWd------~~tg~---~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
.++. +...- .+..|+||... +.-.|..+.|+|.--+|.|++
T Consensus 675 ~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~------------------------------~~~gVLd~~wHP~qpWLfsAG 724 (733)
T KOG0650|consen 675 IVFHGMVYNDLLQNPLIVPLKRLRGHEKT------------------------------NDLGVLDTIWHPRQPWLFSAG 724 (733)
T ss_pred EEEeeeeehhhhcCCceEeeeeccCceee------------------------------cccceEeecccCCCceEEecC
Confidence 9885 21111 46778999721 013688999999999999999
Q ss_pred CCCcEEEc
Q 016446 380 RHGLVHVW 387 (389)
Q Consensus 380 ~D~tIrlW 387 (389)
.||+||||
T Consensus 725 Ad~tirlf 732 (733)
T KOG0650|consen 725 ADGTIRLF 732 (733)
T ss_pred CCceEEee
Confidence 99999999
No 123
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.4e-21 Score=187.39 Aligned_cols=275 Identities=11% Similarity=0.150 Sum_probs=217.1
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecc-----------------cc-eeeeeeecCCcceEEEEEEeeCCCEEEEEE
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRE-----------------TN-RRICFLNVSPDEVIRSLFYNKNNDSLITVS 63 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~-----------------tg-~~l~tl~~~~~~~v~sv~~spdg~~l~s~s 63 (389)
+.++.-.|+ |..||+++-|-.|||.|.+ .+ -.++||--| .+.|+.+.|.|..+.|||
T Consensus 113 ~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH-~devn~l~FHPre~ILiS-- 189 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH-VDEVNDLDFHPRETILIS-- 189 (430)
T ss_pred cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc-cCcccceeecchhheEEe--
Confidence 456667788 9999999999999999986 11 367888886 499999999999999999
Q ss_pred EeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec---
Q 016446 64 VYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--- 140 (389)
Q Consensus 64 ~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--- 140 (389)
++.| .+++|.|...-..-...+.|+..+ .+.++.|. |.|.+|+-|.+--++||+|++|.+|.....
T Consensus 190 --~srD------~tvKlFDfsK~saKrA~K~~qd~~--~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 190 --GSRD------NTVKLFDFSKTSAKRAFKVFQDTE--PVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred --ccCC------CeEEEEecccHHHHHHHHHhhccc--eeeeEeec-CCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence 5678 899999984322212334555222 35789997 999999999999999999999999976552
Q ss_pred --CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ec-CCceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 016446 141 --DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HL-LHRNKKVDFIEQFNEKLLVKQENENLQILDV 215 (389)
Q Consensus 141 --~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~-~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~ 215 (389)
.+.|.+|.+|+ |.+-+++ +-|+-|||||=-.++|+.++. -| ...|-+..|. .++.++++++.|.++|||.+
T Consensus 259 qht~ai~~V~Ys~t~~lYvTa---SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTA---SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred ccccceeEEEecCCccEEEEe---ccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeeeee
Confidence 36899999995 6666665 456899999999999999997 34 3456888887 67889999999999999999
Q ss_pred CCCeEEEEcccC-----CCceEEEEEcCCCcEEEEEc--CCeEEEEeCC-CcEEEEec-cCcCCcCCCCeeEEEECCCCC
Q 016446 216 RNAELMEVSRTE-----FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 216 ~tg~~~~~l~gh-----~~~v~sv~fspdg~~laS~s--D~tIklWd~~-G~~l~tl~-gh~~~~~~~~v~sv~fSpdG~ 286 (389)
.+|++++...|- +..-....|+..-.+++.-. -+.+--||.+ ++.+..+. ||.+. |+.+.-||.+-
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-----~R~i~HSP~~p 409 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-----VRWIVHSPVEP 409 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-----ceEEEeCCCCC
Confidence 999999987553 33334455888877777664 6678889996 65444333 88887 68999999999
Q ss_pred EEEEEecCCCcccccCCCCCeEEEEe
Q 016446 287 LIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 287 ~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
-.+++|.| -.+|.|-
T Consensus 410 ~FmTcsdD-----------~raRFWy 424 (430)
T KOG0640|consen 410 AFMTCSDD-----------FRARFWY 424 (430)
T ss_pred ceeeeccc-----------ceeeeee
Confidence 99998775 7999995
No 124
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=1.6e-20 Score=179.49 Aligned_cols=261 Identities=10% Similarity=0.100 Sum_probs=196.8
Q ss_pred cEEEEEee---ccEEEEEecCceEEEEeccc-ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 5 KVIEIVAA---RDIVFALAHSGVCAAFSRET-NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 5 ~v~~i~~~---~~~~a~~~~~gtiklW~~~t-g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
.|.+|.|| .-.++++|.|++||+|+++. |+..-.....+..+|-+++||.||..+++ ++-| .++++
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~----g~~D------k~~k~ 98 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFS----GGCD------KQAKL 98 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEe----eccC------CceEE
Confidence 46788898 55677999999999999875 56665555556689999999999998888 5566 89999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecC-CCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p-dG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~ 157 (389)
|||++|++ +.+- .|-+.+..+.|-++ +-+.|++||.|+|+|.||....+++.++. -+.|.+...= | +++.
T Consensus 99 wDL~S~Q~---~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~p--m~vV 171 (347)
T KOG0647|consen 99 WDLASGQV---SQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYP--MAVV 171 (347)
T ss_pred EEccCCCe---eeee--ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCc--eeEE
Confidence 99999986 2222 23345567777632 22589999999999999999999998887 5667665554 3 2323
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEE-ee-cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC--------eEEEEcccC
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVF-YH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA--------ELMEVSRTE 227 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl-~~-~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg--------~~~~~l~gh 227 (389)
+.. ++.|.+.+++++...... +. .--.+++|+.- ++.+..|.|+-.|.+-|-.+..+ +|.+.-..-
T Consensus 172 ata---~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f-~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 172 ATA---ERHIAVYNLENPPTEFKRIESPLKWQTRCVACF-QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV 247 (347)
T ss_pred Eec---CCcEEEEEcCCCcchhhhhcCcccceeeEEEEE-ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence 221 367999999887654321 11 11345788876 67788899999999999999887 343322211
Q ss_pred C---CceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 228 F---MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 228 ~---~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
. -.|++|+|+|.-..|+|++ ||++-.||.+ ...|++.+-|..+ |..-.|+.+|+++|=+
T Consensus 248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qp-----Itcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQP-----ITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCc-----cceeEecCCCCEEEEE
Confidence 1 2688899999999999997 9999999998 6678888888887 7899999999999865
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=4.5e-20 Score=176.80 Aligned_cols=272 Identities=17% Similarity=0.163 Sum_probs=201.7
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEE
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 118 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las 118 (389)
|+....+.|-+|-|+|.++.|+.+| .| ...+++++..-.+ ...|. +...+...+|- |-..+++
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvss----WD------gslrlYdv~~~~l---~~~~~--~~~plL~c~F~--d~~~~~~ 70 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSS----WD------GSLRLYDVPANSL---KLKFK--HGAPLLDCAFA--DESTIVT 70 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEe----cc------CcEEEEeccchhh---hhhee--cCCceeeeecc--CCceEEE
Confidence 4445568999999999988777744 77 6677777754433 22343 22334679996 4668899
Q ss_pred ecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe
Q 016446 119 SAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 195 (389)
Q Consensus 119 ~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~ 195 (389)
|+.|++||+.|+++++...... ...|++|-+++ |..+ ++ +-|++||+||..+-.+.-++. ....|..+.
T Consensus 71 G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vI-sg---sWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~ 142 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVI-SG---SWDKTIKFWDPRNKVVVGTFD----QGKKVYCMD 142 (323)
T ss_pred eccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEE-Ec---ccCccEEEEeccccccccccc----cCceEEEEe
Confidence 9999999999999998766664 57899999993 5555 44 566899999988744554544 222444443
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCeEEEEc--ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C----cEEEEeccC
Q 016446 196 QFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDH 267 (389)
Q Consensus 196 ~~~~~l~~~s~D~tIklWd~~tg~~~~~l--~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G----~~l~tl~gh 267 (389)
..+.+|+.|..|..+.+||+++-....+- ..-.-++++|++-|++.-.+.+| ||-|-+=.++ - +....|+.|
T Consensus 143 v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 143 VSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred ccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 45899999999999999999875432221 23345789999999999999999 9988776664 3 234466666
Q ss_pred cCCcCCC----CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCc
Q 016446 268 LLWHPDC----NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 343 (389)
Q Consensus 268 ~~~~~~~----~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~ 343 (389)
-....+. -|++++|+|=-+++|||+. ||-|.+||+.+.+.+..|..-.
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGs-----------DG~V~~Wd~~~rKrl~q~~~~~----------------- 274 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGS-----------DGIVNIWDLFNRKRLKQLAKYE----------------- 274 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCC-----------CceEEEccCcchhhhhhccCCC-----------------
Confidence 5411110 2799999999999999854 6999999999999888886654
Q ss_pred cccccccceecccccccCCEEEEEECCCCCEEEEecC
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~ 380 (389)
..|-+++||-||..||.|+.
T Consensus 275 -----------------~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 -----------------TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred -----------------CceEEEEeccCCCeEEEEec
Confidence 36999999999999999984
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.2e-21 Score=202.66 Aligned_cols=275 Identities=12% Similarity=0.180 Sum_probs=204.9
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC----CcceeEeeecccCceeEEEecCCCeEEEEecC
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD----SGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 121 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~----~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~ 121 (389)
..+.|..+|+-.+|+.+. . ++||+..+.=-+ ..-+++ ..+.+|. ..-.|++..-+.++||+++.
T Consensus 41 ~~nAIs~nr~~~qiv~AG----r--s~lklyai~~~~-~~~~~~~~~k~kqn~~~-----S~~DVkW~~~~~NlIAT~s~ 108 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAG----R--SLLKLYAINPND-FSEKCNHRFKTKQNKFY-----SAADVKWGQLYSNLIATCST 108 (839)
T ss_pred ccceEeecCCcceeEEec----c--cceeeEeeCccc-CCcceeeecccccceee-----ehhhcccccchhhhheeecC
Confidence 347788889988888852 2 455544432111 011110 0122332 12247776556789999999
Q ss_pred CCeEEEEeCCC---CeEEEEec--CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEE
Q 016446 122 DSIYKVFDLKN---YTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 194 (389)
Q Consensus 122 D~tiklWdl~~---g~~l~tl~--~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~ 194 (389)
.|.|-+||+.- .++++.|. ...|..+.|++ -.+|+++ +.|++||+||++.-+-..++.+....++.|.|+
T Consensus 109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG---SQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG---SQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec---CCCceEEEEeeecccccccccccchhhhceeec
Confidence 99999999975 33555554 45899999993 5566554 778999999999999999999888899999999
Q ss_pred ecCCCeEEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc--EEEEeccCcC
Q 016446 195 EQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLL 269 (389)
Q Consensus 195 ~~~~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~--~l~tl~gh~~ 269 (389)
+..+.+++++.+.|.+++||++. .+|...|..|.+.|..+-++|++.+||||+ |++|||||.. ++ .+.|.+ ..
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn--Ti 263 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN--TI 263 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--ec
Confidence 77788999999999999999985 678888999999999999999999999999 9999999997 44 334443 22
Q ss_pred CcCCCCeeEEEECCCCCE-EEEEecCCCcccccCCCCCeEEEEeCCCCe-EEEEecCCCCCCCcccccCCCCCCCccccc
Q 016446 270 WHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNCSPKVDDELGSSSTGKSKKLN 347 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~-laS~s~D~~~~~~~~s~D~tIklWd~~tg~-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
. .|..|.|=|+-++ ||+++. ..|-.|++||+..-- .-+++..|+
T Consensus 264 a----pv~rVkWRP~~~~hLAtcsm---------v~dtsV~VWDvrRPYIP~~t~~eH~--------------------- 309 (839)
T KOG0269|consen 264 A----PVGRVKWRPARSYHLATCSM---------VVDTSVHVWDVRRPYIPYATFLEHT--------------------- 309 (839)
T ss_pred c----eeeeeeeccCccchhhhhhc---------cccceEEEEeeccccccceeeeccC---------------------
Confidence 2 1789999998765 455543 357899999987433 347788887
Q ss_pred cccceecccccccCCEEEEEECC-CCCEEEEecCCCcE
Q 016446 348 KSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLV 384 (389)
Q Consensus 348 ~~~~~~~~~~~~~~~V~svafSp-dg~~LaSgs~D~tI 384 (389)
..|+.+++-. |...|-|+|.|++|
T Consensus 310 -------------~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 310 -------------DSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred -------------ccccceeccCCCceeeEeecCccHH
Confidence 4677777755 67789999999986
No 127
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.6e-19 Score=183.39 Aligned_cols=265 Identities=11% Similarity=0.111 Sum_probs=209.8
Q ss_pred ccccEEEEEee--ccEEEEEecCceEEEEecccce-eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 2 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR-RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 2 ~~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~-~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
+++.|.+..|+ ...||++=.+|.|.+|++..+- +..++.|+.+..|.+++|+ +|..|.|+ +.+ ..+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~----g~s------g~i 92 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSS----GLS------GSI 92 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEee----cCC------ceE
Confidence 67889999999 4559999999999999987664 4456788877789999999 55668884 355 678
Q ss_pred eEeEeccCCCCCcceeEeee-cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEE--ec--CCcEEEEEEcC-C
Q 016446 79 KIEYIRRGKPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--IS--DKHVQEIKISP-G 152 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~~~-~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~t--l~--~~~V~~vafS~-g 152 (389)
.-||+.+++. +..++ .-+.+++++.+ |.+..|+-|.+||.+...+..+++..+. |. ...|.+|+|+| |
T Consensus 93 ~EwDl~~lk~-----~~~~d~~gg~IWsiai~-p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 93 TEWDLHTLKQ-----KYNIDSNGGAIWSIAIN-PENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred EEEecccCce-----eEEecCCCcceeEEEeC-CccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc
Confidence 8899999886 33322 44557889997 8899999999999999999888886643 32 37899999995 6
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEE-------ee-cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVF-------YH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 224 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl-------~~-~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l 224 (389)
..||++ +.|+-||+||+..|+.++.. .- -.-.+|+|.|.. ++.|++|-.-|+|+.||.+.|.+++..
T Consensus 167 ~~i~~G---s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~ 241 (691)
T KOG2048|consen 167 TKIAGG---SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSH 241 (691)
T ss_pred cEEEec---ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhh
Confidence 668876 45589999999999998821 11 112469999984 789999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc---EEE--EeccCcCCcCCCCeeEEEECCCCCEEEEEecCC
Q 016446 225 RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE---LVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 295 (389)
Q Consensus 225 ~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~---~l~--tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~ 295 (389)
.-|...|.+++-.+++.++.+++ |++|-.+...+. -+. ....|.+. |.+++..++ .|.||+.|-
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hd-----vrs~av~~~--~l~sgG~d~ 311 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHD-----VRSMAVIEN--ALISGGRDF 311 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccc-----ceeeeeecc--eEEecceee
Confidence 99999999999999999999999 998877777532 222 22345443 789999888 888888763
No 128
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.1e-20 Score=176.75 Aligned_cols=275 Identities=15% Similarity=0.141 Sum_probs=195.7
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEeccc-----ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeee
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRET-----NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~t-----g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~ 76 (389)
-.|.++-|+ |+.+|+.+.|++||||+... -+||+. |..- +--..|+|+||-+.++.+.. .. .
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~-dhpT~V~FapDc~s~vv~~~---~g------~ 155 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEY-DHPTRVVFAPDCKSVVVSVK---RG------N 155 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccC-CCceEEEECCCcceEEEEEc---cC------C
Confidence 358899999 99999999999999999752 234442 1111 23468999999998877654 22 2
Q ss_pred eeeEeEe---ccCCCCCcce-----eEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEE
Q 016446 77 STKIEYI---RRGKPDSGFA-----LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQE 146 (389)
Q Consensus 77 ~~~l~~i---~~g~~~~~~~-----l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~ 146 (389)
.++++.+ ..|..-+... -|...+..-+-.+-.. .++++|+|+|.|-+|-||+++ |+.+.++.. ..-..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 3444443 3444411111 1111122222334443 679999999999999999997 999988864 35677
Q ss_pred EEEcC-CceEEEEecCCCCeeEEEEEcC---CCe-----EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 016446 147 IKISP-GIMLLIFNRSSSHVPLKILSIE---DGT-----VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 217 (389)
Q Consensus 147 vafS~-g~~la~~~~~s~d~tiklWd~~---tG~-----~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t 217 (389)
.|.|| |..+|+++.. --||+|.+- .|+ ....|+||...|.+.+|+ ++..++++.|.||++||||..-
T Consensus 234 aavSP~GRFia~~gFT---pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFT---PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeeCCCCcEEEEecCC---CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEEEecCCcEEEeeccc
Confidence 89995 7788776544 469999863 232 335788999999999998 6788999999999999998752
Q ss_pred ----Ce---EEEEc----ccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEecc-CcCCcCCCCeeEEEECCC
Q 016446 218 ----AE---LMEVS----RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 218 ----g~---~~~~l----~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~g-h~~~~~~~~v~sv~fSpd 284 (389)
++ .+++. ..-....-.++.+|.|+.||.+.-.+++++..+ |+-+-+|+. |..- |.+++|+||
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~-----Is~is~~~~ 384 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTT-----ISSISYSSD 384 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCc-----eeeEEecCC
Confidence 22 22322 112233447899999999998888899999997 988877774 4433 799999999
Q ss_pred CCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 285 QDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 285 G~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
|++||+++ |..+|+..
T Consensus 385 g~~~atcG------------dr~vrv~~ 400 (420)
T KOG2096|consen 385 GKYIATCG------------DRYVRVIR 400 (420)
T ss_pred CcEEeeec------------ceeeeeec
Confidence 99999986 47888765
No 129
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=4.5e-19 Score=174.29 Aligned_cols=272 Identities=13% Similarity=0.120 Sum_probs=183.6
Q ss_pred EEEEEecCceEEEEeccc-ce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec-cCCCCC
Q 016446 15 IVFALAHSGVCAAFSRET-NR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDS 90 (389)
Q Consensus 15 ~~a~~~~~gtiklW~~~t-g~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~-~g~~~~ 90 (389)
..++..+++.|++|++.+ |+ +++++... .....++++|||+.|..+.. .+ ..+.+|++. .|++.
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~---~~------~~i~~~~~~~~g~l~- 71 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVR---PE------FRVLSYRIADDGALT- 71 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEecC--CCCccEEECCCCCEEEEEEC---CC------CcEEEEEECCCCceE-
Confidence 345568899999999964 43 66666532 45678899999998876432 33 566677775 45431
Q ss_pred cceeEeeecccCceeEEEecCCCeEEEEecC-CCeEEEEeCC-CCe---EEEEecC-CcEEEEEEc-CCceEEEEecCCC
Q 016446 91 GFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLK-NYT---MLYSISD-KHVQEIKIS-PGIMLLIFNRSSS 163 (389)
Q Consensus 91 ~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~-D~tiklWdl~-~g~---~l~tl~~-~~V~~vafS-~g~~la~~~~~s~ 163 (389)
.+-.....++|..++|+ |||++|.+++. ++.|.+|+++ +|. .+..+.+ .....++|+ +|+++++++ ..
T Consensus 72 --~~~~~~~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~--~~ 146 (330)
T PRK11028 72 --FAAESPLPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC--LK 146 (330)
T ss_pred --EeeeecCCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee--CC
Confidence 11112234567889998 89998887764 8999999996 343 3344433 457889999 577776663 44
Q ss_pred CeeEEEEEcCCCeEEE-------EEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECC--CCe--EEEEcccC----
Q 016446 164 HVPLKILSIEDGTVLK-------VFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR--NAE--LMEVSRTE---- 227 (389)
Q Consensus 164 d~tiklWd~~tG~~l~-------tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~--tg~--~~~~l~gh---- 227 (389)
+++|++||+.+...+. ++. .......++|+ |++.++.+.. .+++|.+||+. +|+ .++.+..+
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~ 224 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF 224 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecC-CCCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence 5899999998733332 111 12344678998 7788887876 59999999997 343 34444322
Q ss_pred --CCceEEEEEcCCCcEEEEE-c-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 228 --FMTPSAFIFLYENQLFLTF-R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 228 --~~~v~sv~fspdg~~laS~-s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
..+...++|+|||++|.++ . +++|.+|+++ +..+ ++.+|.... ...+.++|+|||++|++++..
T Consensus 225 ~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~------- 294 (330)
T PRK11028 225 SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-SFEGHQPTE--TQPRGFNIDHSGKYLIAAGQK------- 294 (330)
T ss_pred CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEecc--ccCCceEECCCCCEEEEEEcc-------
Confidence 2234568999999988888 4 8999999984 4322 333443210 013689999999999998753
Q ss_pred CCCCCeEEEEeC--CCCeE
Q 016446 302 EGSAGSINVSSI--LTGKC 318 (389)
Q Consensus 302 ~s~D~tIklWd~--~tg~~ 318 (389)
+++|.+|++ .+|.+
T Consensus 295 ---~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 295 ---SHHISVYEIDGETGLL 310 (330)
T ss_pred ---CCcEEEEEEcCCCCcE
Confidence 589999986 45554
No 130
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=6.3e-21 Score=178.10 Aligned_cols=246 Identities=11% Similarity=0.090 Sum_probs=184.6
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecC-CCe
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDV-NGK 114 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~p-dG~ 114 (389)
.++.-.|.+.|.++...--|+.||++| -| +.|||..++.... .+.+-+ ..+.|.++-|+|..| -|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcs----SD------~tVkIf~v~~n~~--s~ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCS----SD------GTVKIFEVRNNGQ--SKLLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeec----CC------ccEEEEEEcCCCC--ceeeeEecCCCCCeeEEeecccccCc
Confidence 344445678999999999999999965 55 7899999854432 122322 346677788999754 499
Q ss_pred EEEEecCCCeEEEEeCCCCeE--E--EEecCCcEEEEEEcC---CceEEEEecCCCCeeEEEEEcCCC--eEE-EEEeec
Q 016446 115 VLTYSAQDSIYKVFDLKNYTM--L--YSISDKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDG--TVL-KVFYHL 184 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~--l--~tl~~~~V~~vafS~---g~~la~~~~~s~d~tiklWd~~tG--~~l-~tl~~~ 184 (389)
+|||+|.||.|-||.-++|+- . ++.|...|++|+|.| |-+||.++ .|++|.+.+..+- -+- +...-|
T Consensus 72 iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas---SDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS---SDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred EeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee---CCCcEEEEEEcCCCCccchhhhhcc
Confidence 999999999999999888862 2 344567899999996 77787764 4578999876542 222 333467
Q ss_pred CCceeEEEEEecC--C-----------CeEEEEeCCCcEEEEECCCCe--EEEEcccCCCceEEEEEcCCC----cEEEE
Q 016446 185 LHRNKKVDFIEQF--N-----------EKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLYEN----QLFLT 245 (389)
Q Consensus 185 ~~~~~~v~f~~~~--~-----------~~l~~~s~D~tIklWd~~tg~--~~~~l~gh~~~v~sv~fspdg----~~laS 245 (389)
.-.+.+|.+.|.. | .+|++|+.|.+||||+..+++ .-++|++|.++|+.||+.|.- .+|||
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence 7888999997541 2 469999999999999998874 455699999999999999854 57999
Q ss_pred Ec-CCeEEEEeCCC---cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 246 FR-NRTVAVWNFRG---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 246 ~s-D~tIklWd~~G---~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
++ ||++-||..+. +-..||. |..+ +.++.+.||+.|.+||.++.| +.|+||-
T Consensus 229 ~SqDg~viIwt~~~e~e~wk~tll-~~f~---~~~w~vSWS~sGn~LaVs~Gd-----------Nkvtlwk 284 (299)
T KOG1332|consen 229 CSQDGTVIIWTKDEEYEPWKKTLL-EEFP---DVVWRVSWSLSGNILAVSGGD-----------NKVTLWK 284 (299)
T ss_pred ecCCCcEEEEEecCccCccccccc-ccCC---cceEEEEEeccccEEEEecCC-----------cEEEEEE
Confidence 99 99999998752 2222332 1222 238999999999999998764 7999996
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.7e-20 Score=185.86 Aligned_cols=254 Identities=14% Similarity=0.207 Sum_probs=190.0
Q ss_pred eeeeEeEeccCCCCCcceeEe--eecccCceeEEEecCCCeEEEEecC-CCeEEEEeCCCCeEEE-Ee-cCCcEEEEEEc
Q 016446 76 RSTKIEYIRRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLY-SI-SDKHVQEIKIS 150 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~--~~~~~~~~~v~Fs~pdG~~Las~s~-D~tiklWdl~~g~~l~-tl-~~~~V~~vafS 150 (389)
+.+.+||+++|.. +++ ....-...++.- -++.+|+++.. ..-+.+|.+....... .+ -.+.|.+++-+
T Consensus 18 ~~~~~~dl~TGt~-----~~~ykg~~~a~~~sl~~--l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 18 INCIVWDLRTGTS-----LLQYKGSYLAQAASLTA--LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred cceeEEecCCCce-----eEEecCcccccchhhhh--hchhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 6788899999975 222 110000111221 13467776653 5578899985444332 11 25789999999
Q ss_pred C-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC---------CCeE
Q 016446 151 P-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---------NAEL 220 (389)
Q Consensus 151 ~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~---------tg~~ 220 (389)
| |.+|+.+... +.|.||.+.+|++|.++..|-..+..+.|+ -|+..|+++|.||-|.+|++- +-++
T Consensus 91 n~G~~l~ag~i~---g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p 166 (476)
T KOG0646|consen 91 NLGYFLLAGTIS---GNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKP 166 (476)
T ss_pred CCceEEEeeccc---CcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccCCCccc
Confidence 5 7777654233 689999999999999999999999999998 678999999999999999763 2457
Q ss_pred EEEcccCCCceEEEEEcCC--CcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 016446 221 MEVSRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 221 ~~~l~gh~~~v~sv~fspd--g~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~ 296 (389)
+..+.+|.-+|..+-..+. .-+|+|+| |+|||+||+. |.+|.++.-... +.+++..|-++.+-.|+.
T Consensus 167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s------i~av~lDpae~~~yiGt~--- 237 (476)
T KOG0646|consen 167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS------IKAVALDPAERVVYIGTE--- 237 (476)
T ss_pred eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc------ceeEEEcccccEEEecCC---
Confidence 8889999999999888765 34688888 9999999997 999988864332 689999999999998765
Q ss_pred cccccCCCCCeEEEEeCCC----------------CeEEEEecCCCCCCCcccccCCCCCCCccccccccceeccccccc
Q 016446 297 EDQWMEGSAGSINVSSILT----------------GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 360 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~t----------------g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (389)
+|.|-+-++.+ +..+..+.||.+ -
T Consensus 238 --------~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~--------------------------------~ 277 (476)
T KOG0646|consen 238 --------EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN--------------------------------E 277 (476)
T ss_pred --------cceEEeeehhcCCcccccccccccccccceeeeeccccC--------------------------------C
Confidence 48887766532 223344445541 0
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 361 EDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 361 ~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++|++|-||..|+||++||+|.+||.
T Consensus 278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 278 SAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 49999999999999999999999999984
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=7.5e-20 Score=189.82 Aligned_cols=274 Identities=13% Similarity=0.122 Sum_probs=215.1
Q ss_pred EEee--ccEEEEEecCceEEEEeccc----ceeeeeeecCCcceEEEEEEee------------CCCEEEEEEEeecCCC
Q 016446 9 IVAA--RDIVFALAHSGVCAAFSRET----NRRICFLNVSPDEVIRSLFYNK------------NNDSLITVSVYASDNF 70 (389)
Q Consensus 9 i~~~--~~~~a~~~~~gtiklW~~~t----g~~l~tl~~~~~~~v~sv~~sp------------dg~~l~s~s~~~~~d~ 70 (389)
.+|. ++.|.+...|+.+.+||+.. |++-..|- |+.-||+|--=| .|- .+++ +.|
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly--HS~ciW~Ve~~p~nv~~~~~aclp~~c-F~TC----SsD- 401 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY--HSACIWDVENLPCNVHSPTAACLPRGC-FTTC----SSD- 401 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEeccccccccceeeeee--ccceeeeeccccccccCcccccCCccc-eeEe----cCC-
Confidence 3555 88899999999999999753 77665554 568899887655 222 3453 355
Q ss_pred cceeeeeeeEeEeccCCCC---------------------------CcceeEeee------cccCceeEEEecCCCeEEE
Q 016446 71 SSLKCRSTKIEYIRRGKPD---------------------------SGFALFESE------SLKWPGFVEFDDVNGKVLT 117 (389)
Q Consensus 71 ~~l~~~~~~l~~i~~g~~~---------------------------~~~~l~~~~------~~~~~~~v~Fs~pdG~~La 117 (389)
.+||||++.-+.-+ ....+|... ....+++|+.| ||||.||
T Consensus 402 -----~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~gqhLA 475 (1080)
T KOG1408|consen 402 -----GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDGQHLA 475 (1080)
T ss_pred -----CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCcceec
Confidence 69999998543211 111133211 22335779998 9999999
Q ss_pred EecCCCeEEEEeCCCCeEEEE--ecCCcEEEEEEc-C---CceEEEEecCCCCeeEEEEEcCCC-eEEEEEeecCCceeE
Q 016446 118 YSAQDSIYKVFDLKNYTMLYS--ISDKHVQEIKIS-P---GIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKK 190 (389)
Q Consensus 118 s~s~D~tiklWdl~~g~~l~t--l~~~~V~~vafS-~---g~~la~~~~~s~d~tiklWd~~tG-~~l~tl~~~~~~~~~ 190 (389)
+|..-|++||++|.+-+.+.. .|..+|.++.|| | ...||+ ++.|.-|.++|+... -+++||.+|...+.+
T Consensus 476 sGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS---asrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS---ASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred ccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh---ccCCceEEEEecccccchhhhhcccccceeE
Confidence 999999999999987765544 456799999999 6 445554 467799999998643 356899999999999
Q ss_pred EEEEecCCC------------------------------------------------eEEEEeCCCcEEEEECCCCeEEE
Q 016446 191 VDFIEQFNE------------------------------------------------KLLVKQENENLQILDVRNAELME 222 (389)
Q Consensus 191 v~f~~~~~~------------------------------------------------~l~~~s~D~tIklWd~~tg~~~~ 222 (389)
|.|...+.. ++++++.|+.|||+|+++|+..+
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 999764322 56678999999999999999999
Q ss_pred Eccc---CCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 016446 223 VSRT---EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 297 (389)
Q Consensus 223 ~l~g---h~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~ 297 (389)
+|+| |.+..-.|..-|-|-|||++. |+|+-+.|+- |||+.++.||... |..+-|+||-+.|+|.+.
T Consensus 633 ~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~-----VTG~kF~nDCkHlISvsg---- 703 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA-----VTGVKFLNDCKHLISVSG---- 703 (1080)
T ss_pred eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh-----eeeeeecccchhheeecC----
Confidence 9865 777888999999999999997 9999999995 9999999999976 899999999999999876
Q ss_pred ccccCCCCCeEEEEeCCC
Q 016446 298 DQWMEGSAGSINVSSILT 315 (389)
Q Consensus 298 ~~~~~s~D~tIklWd~~t 315 (389)
||.|-+|.+..
T Consensus 704 -------DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 -------DGCIFVWKLPL 714 (1080)
T ss_pred -------CceEEEEECch
Confidence 49999999763
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=9e-19 Score=176.49 Aligned_cols=313 Identities=11% Similarity=0.116 Sum_probs=225.1
Q ss_pred ccEEEEEee----ccEEEEE--ecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 4 TKVIEIVAA----RDIVFAL--AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 4 ~~v~~i~~~----~~~~a~~--~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
..|..|.|+ |-.++.. +.+..+.+||-+.+..+..+.-.+ +.|-...|.|-+..||.. .+. ..
T Consensus 155 ~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn-e~v~~a~FHPtd~nliit---~Gk-------~H 223 (626)
T KOG2106|consen 155 RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN-EVVFLATFHPTDPNLIIT---CGK-------GH 223 (626)
T ss_pred ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc-ceEEEEEeccCCCcEEEE---eCC-------ce
Confidence 358889998 5555554 456788899988888887777665 899999999998766662 223 46
Q ss_pred eeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCce
Q 016446 78 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIM 154 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~ 154 (389)
+.+|+.+.|-+...+.+|......++.+|.|. +||+. ++|..+|+|-+|+..+.+..+.. |...|.++..- +|..
T Consensus 224 ~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl 301 (626)
T KOG2106|consen 224 LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-ENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL 301 (626)
T ss_pred EEEEEccCCceEEEeeccccccceEEEEEEEc-CCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE
Confidence 78898888877767778874333788999997 89975 56889999999998666654444 45789998888 5554
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEE-----------------------------------------EEeecCCceeEEEE
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLK-----------------------------------------VFYHLLHRNKKVDF 193 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~-----------------------------------------tl~~~~~~~~~v~f 193 (389)
| + ++-|+.|-+|| ..=+.++ +..+|....+.++.
T Consensus 302 l-S---GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 302 L-S---GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred e-e---cCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence 4 5 46679999998 3212111 11245555666666
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcC
Q 016446 194 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHP 272 (389)
Q Consensus 194 ~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~ 272 (389)
. |+..++++++.|++++||| ..++ ..-+--.+++.++.|.|-| .+|-|. -|.--+-|.+-+.+.++.--..+
T Consensus 377 h-ps~~q~~T~gqdk~v~lW~--~~k~-~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~-- 449 (626)
T KOG2106|consen 377 H-PSKNQLLTCGQDKHVRLWN--DHKL-EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQ-- 449 (626)
T ss_pred C-CChhheeeccCcceEEEcc--CCce-eEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCc--
Confidence 5 5566777788888888888 2222 2222234567888888888 777776 77666777764333333222223
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEecCCCCCCCcccccCCCCCCCccccccccc
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 351 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (389)
++.|+|||||.+||.||.| +.|.|+-+.. |.......-|.+
T Consensus 450 ---ls~v~ysp~G~~lAvgs~d-----------~~iyiy~Vs~~g~~y~r~~k~~g------------------------ 491 (626)
T KOG2106|consen 450 ---LSVVRYSPDGAFLAVGSHD-----------NHIYIYRVSANGRKYSRVGKCSG------------------------ 491 (626)
T ss_pred ---eEEEEEcCCCCEEEEecCC-----------CeEEEEEECCCCcEEEEeeeecC------------------------
Confidence 7999999999999999875 8999998854 566666665653
Q ss_pred eecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 352 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 352 ~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
++|+.|.||+|+++|.+-|-|-.|-.|.
T Consensus 492 ---------s~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 492 ---------SPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred ---------ceeEEeeecCCCceEEeccCceEEEEEc
Confidence 5999999999999999999999999984
No 134
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=1.4e-18 Score=182.95 Aligned_cols=345 Identities=14% Similarity=0.162 Sum_probs=241.2
Q ss_pred cEEEEEeeccEEEEEecCceEEEEecccc-ee----eeeeecCCcceEEEEEEeeC---CCEEEEEEEeecCCCcceeee
Q 016446 5 KVIEIVAARDIVFALAHSGVCAAFSRETN-RR----ICFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 5 ~v~~i~~~~~~~a~~~~~gtiklW~~~tg-~~----l~tl~~~~~~~v~sv~~spd---g~~l~s~s~~~~~d~~~l~~~ 76 (389)
+|.=....|+.+.+...++.+.+|+...+ ++ +-.+...+ +.|.+|. .|. ++ |+. |+.+ .
T Consensus 116 ~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~-~~Ital~-HP~TYLNK-Ivv----Gs~~------G 182 (910)
T KOG1539|consen 116 KVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEG-DFITALL-HPSTYLNK-IVV----GSSQ------G 182 (910)
T ss_pred eEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccC-CceeeEe-cchhheee-EEE----eecC------C
Confidence 34444555888999999999999998763 22 12233333 3466654 343 33 333 3344 6
Q ss_pred eeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CC
Q 016446 77 STKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PG 152 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g 152 (389)
...||++++|+. +++ ++....|.+++=+ |-=..+|-|-.+|+|.+.|++.++.+.++++ +.|.+++|. ||
T Consensus 183 ~lql~Nvrt~K~-----v~~f~~~~s~IT~ieqs-PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG 256 (910)
T KOG1539|consen 183 RLQLWNVRTGKV-----VYTFQEFFSRITAIEQS-PALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG 256 (910)
T ss_pred cEEEEEeccCcE-----EEEecccccceeEeccC-CcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCC
Confidence 778899999998 554 3344556667766 6667899999999999999999999999985 689999999 88
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe----EEEEcccC
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE----LMEVSRTE 227 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~----~~~~l~gh 227 (389)
.-+++++.. -+++-+||++.-+++..+. -|.+.+....|. +....+++.+.|+.+|+|=..+|. .++.=.||
T Consensus 257 ~p~las~~~--~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl-~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH 333 (910)
T KOG1539|consen 257 NPLLASGRS--NGDMAFWDLEKKKLINVTRNAHYGSVTGATFL-PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGH 333 (910)
T ss_pred CeeEEeccC--CceEEEEEcCCCeeeeeeeccccCCcccceec-CCCceEeeccCCCceeEEEeeCCCCcchheeeccCC
Confidence 876655333 2789999999888887776 777888888887 434455566788888888444221 11111222
Q ss_pred C-------------------------------------------------------------------------------
Q 016446 228 F------------------------------------------------------------------------------- 228 (389)
Q Consensus 228 ~------------------------------------------------------------------------------- 228 (389)
.
T Consensus 334 s~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N 413 (910)
T KOG1539|consen 334 SAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN 413 (910)
T ss_pred CCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence 2
Q ss_pred -----------------------------------CceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe---ccCc
Q 016446 229 -----------------------------------MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF---EDHL 268 (389)
Q Consensus 229 -----------------------------------~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl---~gh~ 268 (389)
..+.+|+.++=|+...-|+ .|+|.++|++ |-...++ ..|.
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~ 493 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK 493 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcccc
Confidence 2345555555577777776 9999999998 8888888 4677
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC-CCCCCCcccccCCCCCCCccccc
Q 016446 269 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLN 347 (389)
Q Consensus 269 ~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
.+ |.+|+..--++.++|++.+ |-+|.||.....++.+++- |. +...+-.+..+..+..--+
T Consensus 494 ~~-----V~gla~D~~n~~~vsa~~~-----------Gilkfw~f~~k~l~~~l~l~~~--~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 494 GE-----VTGLAVDGTNRLLVSAGAD-----------GILKFWDFKKKVLKKSLRLGSS--ITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred Cc-----eeEEEecCCCceEEEccCc-----------ceEEEEecCCcceeeeeccCCC--cceeeeeehhhhhhhhcCc
Confidence 66 8999998888999998764 9999999988887776642 22 1111111222111111001
Q ss_pred --------cccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 348 --------KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 348 --------~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
-+.++.-..-+|.+.|++++|||||++|+|++.|++||+||.
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 145555555678899999999999999999999999999984
No 135
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-19 Score=173.53 Aligned_cols=258 Identities=13% Similarity=0.136 Sum_probs=185.1
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec--cCCCCCcceeEeeecccCceeEEEecCC-C
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDSGFALFESESLKWPGFVEFDDVN-G 113 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~--~g~~~~~~~l~~~~~~~~~~~v~Fs~pd-G 113 (389)
+++.-.|.+.|.+|.|.+-|..+|++| -| .+++|||.. +|+..-+.. | ..+-+.+..|.+.+|. |
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCS----sD------q~vkI~d~~~~s~~W~~Ts~-W-rah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCS----SD------QTVKIWDSTSDSGTWSCTSS-W-RAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cccccCCcceeeeeeecccCceeeecc----CC------CcEEEEeccCCCCceEEeee-E-EecCCcEEEEEecCcccc
Confidence 456666779999999999999999954 66 778888863 333311111 1 2355566778887665 9
Q ss_pred eEEEEecCCCeEEEEeCC------CCe---EEEEec--CCcEEEEEEcC---CceEEEEecCCCCeeEEEEEcCC-----
Q 016446 114 KVLTYSAQDSIYKVFDLK------NYT---MLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIED----- 174 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~------~g~---~l~tl~--~~~V~~vafS~---g~~la~~~~~s~d~tiklWd~~t----- 174 (389)
|.+|++|.|+|++||.=. .|+ ...++. ...|.+|.|.| |-+||++ +.|+++||++...
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~---~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA---SADGILRIYEAPDPMNLS 150 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe---ccCcEEEEEecCCccccc
Confidence 999999999999999741 121 234554 36899999997 8888876 5668999987654
Q ss_pred -CeEEEEEe-------ecCCceeEEEEEec--CCCeEEEEeCC-----CcEEEEECCC-C-eE--EEEcccCCCceEEEE
Q 016446 175 -GTVLKVFY-------HLLHRNKKVDFIEQ--FNEKLLVKQEN-----ENLQILDVRN-A-EL--MEVSRTEFMTPSAFI 235 (389)
Q Consensus 175 -G~~l~tl~-------~~~~~~~~v~f~~~--~~~~l~~~s~D-----~tIklWd~~t-g-~~--~~~l~gh~~~v~sv~ 235 (389)
-++.+.+. .+..+...|.+++. ....||.|+.+ +.++||.... + ++ +..|.+|.++|++++
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~ 230 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDIS 230 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeee
Confidence 22222332 23345577888622 23567777744 5899997553 3 33 456889999999999
Q ss_pred EcCC----CcEEEEEc-CCeEEEEeCCC---------------------cEEEEeccCcCCcCCCCeeEEEECCCCCEEE
Q 016446 236 FLYE----NQLFLTFR-NRTVAVWNFRG---------------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLII 289 (389)
Q Consensus 236 fspd----g~~laS~s-D~tIklWd~~G---------------------~~l~tl~gh~~~~~~~~v~sv~fSpdG~~la 289 (389)
|.|. -++||+++ || |+||++.+ +.+..|.+|... ||.+.|.=-|.+|+
T Consensus 231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~-----VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE-----VWRVRWNMTGTILS 304 (361)
T ss_pred eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc-----eEEEEEeeeeeEEe
Confidence 9994 57899998 99 99999753 235667788865 89999999999999
Q ss_pred EEecCCCcccccCCCCCeEEEEeCC---CCeEEEEecCCC
Q 016446 290 SYCKAEPEDQWMEGSAGSINVSSIL---TGKCLAKINATN 326 (389)
Q Consensus 290 S~s~D~~~~~~~~s~D~tIklWd~~---tg~~l~tl~gH~ 326 (389)
|.+. ||+||||... .-+|+..|+...
T Consensus 305 StGd-----------DG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 305 STGD-----------DGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred ecCC-----------CceeeehhhhhhhhheeeeEEeccC
Confidence 9765 5999999632 245777776544
No 136
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=8e-20 Score=187.21 Aligned_cols=233 Identities=11% Similarity=0.061 Sum_probs=167.3
Q ss_pred CceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeeccc
Q 016446 22 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 101 (389)
Q Consensus 22 ~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~ 101 (389)
+..+.+||.+ |...+++..+. +.+.++.|||||+.|+.++.. ..+ .++++|++.+|+. ..+- ...+
T Consensus 183 ~~~i~i~d~d-g~~~~~lt~~~-~~v~~p~wSPDG~~la~~s~~-~~~------~~i~i~dl~tg~~---~~l~--~~~g 248 (429)
T PRK01742 183 PYEVRVADYD-GFNQFIVNRSS-QPLMSPAWSPDGSKLAYVSFE-NKK------SQLVVHDLRSGAR---KVVA--SFRG 248 (429)
T ss_pred eEEEEEECCC-CCCceEeccCC-CccccceEcCCCCEEEEEEec-CCC------cEEEEEeCCCCce---EEEe--cCCC
Confidence 4699999985 77777888764 789999999999999997643 234 6789999988764 1221 1223
Q ss_pred CceeEEEecCCCeEEEEec-CCCeEEEE--eCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC-
Q 016446 102 WPGFVEFDDVNGKVLTYSA-QDSIYKVF--DLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED- 174 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s-~D~tiklW--dl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t- 174 (389)
+...++|| |||+.|+.++ .|+.++|| |+.++++ ..+. ...+.+++|| +|..|+.++. .++..+||++..
T Consensus 249 ~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~ 324 (429)
T PRK01742 249 HNGAPAFS-PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSAS 324 (429)
T ss_pred ccCceeEC-CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECC
Confidence 44578998 9999888765 68877766 6666654 3343 3467889999 5777776542 345677886643
Q ss_pred CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEE
Q 016446 175 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 253 (389)
Q Consensus 175 G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIkl 253 (389)
|.....+ .+.. ..+.|+ |++++|+..+.++.++ ||+.+|++.....++ ...+++|+|||++|+.++ ++.+++
T Consensus 325 ~~~~~~l-~~~~--~~~~~S-pDG~~ia~~~~~~i~~-~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~ 397 (429)
T PRK01742 325 GGGASLV-GGRG--YSAQIS-ADGKTLVMINGDNVVK-QDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKV 397 (429)
T ss_pred CCCeEEe-cCCC--CCccCC-CCCCEEEEEcCCCEEE-EECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceE
Confidence 2222333 3322 456776 7888888887776555 999999876554443 346788999999999998 998887
Q ss_pred EeC---CCcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 254 WNF---RGELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 254 Wd~---~G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
|.+ +|++++.|.+|... +..++|||-
T Consensus 398 l~~~~~~G~~~~~l~~~~g~-----~~~p~wsp~ 426 (429)
T PRK01742 398 LQLVSADGRFKARLPGSDGQ-----VKFPAWSPY 426 (429)
T ss_pred EEEEECCCCceEEccCCCCC-----CCCcccCCC
Confidence 764 69999999988765 678999984
No 137
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=2.4e-19 Score=183.72 Aligned_cols=220 Identities=14% Similarity=0.127 Sum_probs=152.6
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC---CeEEEEeCCCCeE--EEEecCCcEEEEEEc
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTM--LYSISDKHVQEIKIS 150 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D---~tiklWdl~~g~~--l~tl~~~~V~~vafS 150 (389)
..+.+||.. |.- .+.+.. +...+.+++|| |||+.||+.+.+ .+|++||+.+|+. +..+.+ ...+++||
T Consensus 184 ~~i~i~d~d-g~~--~~~lt~--~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wS 256 (429)
T PRK01742 184 YEVRVADYD-GFN--QFIVNR--SSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFS 256 (429)
T ss_pred EEEEEECCC-CCC--ceEecc--CCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeEC
Confidence 788888853 432 122322 22345679998 999999998754 4799999998874 333333 34579999
Q ss_pred -CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCC-CeEEEEcccC
Q 016446 151 -PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEVSRTE 227 (389)
Q Consensus 151 -~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~t-g~~~~~l~gh 227 (389)
+|.+||.+........|.+||+.+|++ ..+..+...+.++.|+ |++..|+..+ .++..+||++.. +...+.+ ++
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~ 333 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG 333 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence 588888765332223455668777664 5666666677889998 7888888765 788999998753 2223333 44
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D 305 (389)
.. ...+|+|||+.|+..+ ++.++ ||+. |++......+. ..++.|||||++|+.++.+
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~i~~-~Dl~~g~~~~lt~~~~-------~~~~~~sPdG~~i~~~s~~----------- 392 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDNVVK-QDLTSGSTEVLSSTFL-------DESPSISPNGIMIIYSSTQ----------- 392 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCCEEE-EECCCCCeEEecCCCC-------CCCceECCCCCEEEEEEcC-----------
Confidence 43 4578999999999887 76664 9986 76543222221 3578899999999998764
Q ss_pred CeEEEEeC--CCCeEEEEecCCC
Q 016446 306 GSINVSSI--LTGKCLAKINATN 326 (389)
Q Consensus 306 ~tIklWd~--~tg~~l~tl~gH~ 326 (389)
+.+++|++ .+|++++.|.+|.
T Consensus 393 g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred CCceEEEEEECCCCceEEccCCC
Confidence 66777765 4699999999887
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.4e-19 Score=187.14 Aligned_cols=263 Identities=12% Similarity=0.100 Sum_probs=199.2
Q ss_pred CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC
Q 016446 43 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 122 (389)
Q Consensus 43 ~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D 122 (389)
|.+.-..|.|-|+|+.|.++ +.| +.|++|....-.-.... +-. +...+.+++ -++..+++|+.|
T Consensus 12 ht~G~t~i~~d~~gefi~tc----gsd------g~ir~~~~~sd~e~P~t-i~~--~g~~v~~ia---~~s~~f~~~s~~ 75 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTC----GSD------GDIRKWKTNSDEEEPET-IDI--SGELVSSIA---CYSNHFLTGSEQ 75 (933)
T ss_pred ccCceEEEEEcCCCCEEEEe----cCC------CceEEeecCCcccCCch-hhc--cCceeEEEe---ecccceEEeecc
Confidence 34667899999999999985 455 67778875332110000 100 111122343 346689999999
Q ss_pred CeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCC
Q 016446 123 SIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 199 (389)
Q Consensus 123 ~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~ 199 (389)
++|.++...+++.-..|. .-.++.++|+ +|.++|.+ ++|-.||+-++.++...++|.+|.++|..|.|. |.+.
T Consensus 76 ~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaag---sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p~~~ 151 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAG---SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-PKGN 151 (933)
T ss_pred ceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEee---cCceeEEEEeccccchheeecccCCceeeeeEc-CCCC
Confidence 999999998877532232 4578999999 89999876 566899999999999999999999999999998 6678
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEcccC--------CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcC
Q 016446 200 KLLVKQENENLQILDVRNAELMEVSRTE--------FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL 269 (389)
Q Consensus 200 ~l~~~s~D~tIklWd~~tg~~~~~l~gh--------~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~ 269 (389)
.||+.+-||+|++||+++|.+.+++.+- ...+..++|+|+|-.||... |++||+++.. ++....|.+...
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ 231 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS 231 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc
Confidence 8888899999999999999998887652 33566789999965565555 9999999997 788877775443
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
. ..+..+.|||+|+|||++..| |-|-|||+++ ..-|.-
T Consensus 232 s---s~~~~~~wsPnG~YiAAs~~~-----------g~I~vWnv~t------~~~~~~---------------------- 269 (933)
T KOG1274|consen 232 S---SKFSDLQWSPNGKYIAASTLD-----------GQILVWNVDT------HERHEF---------------------- 269 (933)
T ss_pred c---cceEEEEEcCCCcEEeeeccC-----------CcEEEEeccc------chhccc----------------------
Confidence 2 126899999999999998775 8999999987 122441
Q ss_pred cceecccccccCCEEEEEECCCCCEEEE
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYT 377 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaS 377 (389)
...|.+++|-|++.-|--
T Consensus 270 ----------~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 270 ----------KRAVCCEAWKPNANAITL 287 (933)
T ss_pred ----------cceeEEEecCCCCCeeEE
Confidence 158999999999876543
No 139
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=3e-18 Score=168.48 Aligned_cols=262 Identities=12% Similarity=0.153 Sum_probs=176.0
Q ss_pred eeeeEeEecc-CCCCCcceeEeeecccCceeEEEecCCCeEEEEe-cCCCeEEEEeCC-CCeE--EEEec-CCcEEEEEE
Q 016446 76 RSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLK-NYTM--LYSIS-DKHVQEIKI 149 (389)
Q Consensus 76 ~~~~l~~i~~-g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~-s~D~tiklWdl~-~g~~--l~tl~-~~~V~~vaf 149 (389)
..|++|++.+ |++.. +-.....+.+..++|+ |||++|..+ ..++.|.+|++. +|++ +.+.. ......|+|
T Consensus 12 ~~I~~~~~~~~g~l~~---~~~~~~~~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~ 87 (330)
T PRK11028 12 QQIHVWNLNHEGALTL---LQVVDVPGQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHIST 87 (330)
T ss_pred CCEEEEEECCCCceee---eeEEecCCCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEE
Confidence 6788888853 54311 1111234566779998 899988654 468999999986 4553 23333 345678999
Q ss_pred c-CCceEEEEecCCCCeeEEEEEcCC-C---eEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCC-CeEEE
Q 016446 150 S-PGIMLLIFNRSSSHVPLKILSIED-G---TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELME 222 (389)
Q Consensus 150 S-~g~~la~~~~~s~d~tiklWd~~t-G---~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~t-g~~~~ 222 (389)
+ +|++|++++.. ++.|.+|++.+ | +.+..+.+. .+...++|+ |+++++++++ .+++|.+||+.+ |++..
T Consensus 88 ~~~g~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~-p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 88 DHQGRFLFSASYN--ANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANID-PDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred CCCCCEEEEEEcC--CCeEEEEEECCCCCCCCceeeccCC-CcccEeEeC-CCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 9 58888777533 58999999963 4 334444432 345678887 6788887665 789999999986 43321
Q ss_pred ------EcccCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC---Cc--EEEEeccCcC--CcCCCCeeEEEECCCCCE
Q 016446 223 ------VSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GE--LVTSFEDHLL--WHPDCNTNNIYITSDQDL 287 (389)
Q Consensus 223 ------~l~gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~---G~--~l~tl~gh~~--~~~~~~v~sv~fSpdG~~ 287 (389)
.... ...+..++|+|||++|.++. +++|.+|+++ |+ ++.++..+.. ..+ .....++|+|||++
T Consensus 164 ~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~i~~~pdg~~ 241 (330)
T PRK11028 164 QEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT-RWAADIHITPDGRH 241 (330)
T ss_pred cCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC-ccceeEEECCCCCE
Confidence 1111 23577899999999997774 8999999995 33 3555543211 000 01246899999999
Q ss_pred EEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEE
Q 016446 288 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 367 (389)
Q Consensus 288 laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sva 367 (389)
|..+... +++|.+|++.+.....++.+|... + ...+.++
T Consensus 242 lyv~~~~----------~~~I~v~~i~~~~~~~~~~~~~~~------------~-------------------~~p~~~~ 280 (330)
T PRK11028 242 LYACDRT----------ASLISVFSVSEDGSVLSFEGHQPT------------E-------------------TQPRGFN 280 (330)
T ss_pred EEEecCC----------CCeEEEEEEeCCCCeEEEeEEEec------------c-------------------ccCCceE
Confidence 9997543 589999998654333355555410 0 1345689
Q ss_pred ECCCCCEEEEecC-CCcEEEcc
Q 016446 368 YDEERNEIYTGNR-HGLVHVWS 388 (389)
Q Consensus 368 fSpdg~~LaSgs~-D~tIrlW~ 388 (389)
|+|||++|+.++. +++|.+|+
T Consensus 281 ~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 281 IDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred ECCCCCEEEEEEccCCcEEEEE
Confidence 9999999998886 89999995
No 140
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=2.2e-19 Score=173.24 Aligned_cols=274 Identities=11% Similarity=0.119 Sum_probs=206.0
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC---CcceeEe-eecccC-----cee-EEE-----e
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD---SGFALFE-SESLKW-----PGF-VEF-----D 109 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~---~~~~l~~-~~~~~~-----~~~-v~F-----s 109 (389)
+.....-|||||..|.+- +.| ...++|.++.--.. .....|. +..... +.. +-+ .
T Consensus 50 nf~kgckWSPDGSciL~~----sed------n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~ 119 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSL----SED------NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSD 119 (406)
T ss_pred hhhccceeCCCCceEEee----ccc------CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccC
Confidence 456677899999999884 455 45555555321110 0111121 010000 111 111 2
Q ss_pred cCCCeEEEEecCCCeEEEEeCCCCeEEEEecC----C---cEEEEEEc-CCceEEEEecCCCCeeEEEEEc-CCCeEEEE
Q 016446 110 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----K---HVQEIKIS-PGIMLLIFNRSSSHVPLKILSI-EDGTVLKV 180 (389)
Q Consensus 110 ~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~----~---~V~~vafS-~g~~la~~~~~s~d~tiklWd~-~tG~~l~t 180 (389)
.|+-.+.|+.+.|.-|++||..+|++..+++. + .-.+++|| ||.+|.++ .-.+||++|+ +.|+-...
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec----ccceEEEeeccCCCCCCcc
Confidence 48889999999999999999999998877763 2 34689999 78888654 3479999999 66653322
Q ss_pred ---Ee----ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CCeE
Q 016446 181 ---FY----HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTV 251 (389)
Q Consensus 181 ---l~----~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~tI 251 (389)
+. +..+.+..++|+|.+...++.+++-.++-|++-..+++++++-||.+.|+-+.|.+||+.|.||+ |-.|
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 21 22456788999966667888899999999999999999999999999999999999999999996 9999
Q ss_pred EEEeCC--CcEEEEeccCcCCcCCCCeeEEEE--CCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEecCCC
Q 016446 252 AVWNFR--GELVTSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATN 326 (389)
Q Consensus 252 klWd~~--G~~l~tl~gh~~~~~~~~v~sv~f--SpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~gH~ 326 (389)
-.||++ ++.+..|++|..-.+ ..|.| -|+|++||||+. ||.|++||++. |+.+..+..|.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TN----QRI~FDld~~~~~LasG~t-----------dG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTN----QRILFDLDPKGEILASGDT-----------DGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred EEEeehhccchhhhhhhhccCcc----ceEEEecCCCCceeeccCC-----------CccEEEEecCCCCCccccccccc
Confidence 999995 889999999976321 34555 689999999866 49999999998 88777777777
Q ss_pred CCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 327 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
.-|+.|+|+|-=.+||++|-.
T Consensus 341 ----------------------------------d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 ----------------------------------DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ----------------------------------ccccceecCcccceeeeccCc
Confidence 578899999999999998853
No 141
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.7e-19 Score=169.76 Aligned_cols=231 Identities=13% Similarity=0.176 Sum_probs=184.7
Q ss_pred ccEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCC--EEEEEEEeecCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND--SLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~--~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
..+..+.-++-++|+++.|-||++||+.+.+.+..|--| ++.|+++-|.|+-. -|+| +++| +.|-+|
T Consensus 44 ~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~H-agsitaL~F~~~~S~shLlS----~sdD------G~i~iw 112 (362)
T KOG0294|consen 44 GSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSH-AGSITALKFYPPLSKSHLLS----GSDD------GHIIIW 112 (362)
T ss_pred cceeEEEecceeEeccCCCCcEEEEeccchhhhcceecc-ccceEEEEecCCcchhheee----ecCC------CcEEEE
Confidence 356778888999999999999999999999999998876 59999999999874 6888 5578 677777
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcC-CceEEEEe
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFN 159 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~-g~~la~~~ 159 (389)
++..=++... + ..+.+.+..++.. |.|++-.|-+.|+.+|+|||-+|+--+.+. .+.-..|.|+| |.+++...
T Consensus 113 ~~~~W~~~~s--l--K~H~~~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 113 RVGSWELLKS--L--KAHKGQVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred EcCCeEEeee--e--cccccccceeEec-CCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe
Confidence 7532222111 1 2344557789997 899999999999999999999999655554 23333499995 88787764
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEE--c
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF--L 237 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f--s 237 (389)
+. .|-+|.+.+-.+..++... .++..+-|. +++++++|..|++|++||-.++.++..+.+|...|.++++ .
T Consensus 188 ~~----~i~i~q~d~A~v~~~i~~~-~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 RN----KIDIYQLDNASVFREIENP-KRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTN 260 (362)
T ss_pred cc----EEEEEecccHhHhhhhhcc-ccceeeeec--CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEec
Confidence 44 6889999887777766622 335555553 4789999999999999999999999999999999999986 6
Q ss_pred CCCcEEEEEc-CCeEEEEeCC
Q 016446 238 YENQLFLTFR-NRTVAVWNFR 257 (389)
Q Consensus 238 pdg~~laS~s-D~tIklWd~~ 257 (389)
|++.+|+|+| ||.||+||++
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred CCceEEEEeccCceEEEEEcc
Confidence 8999999998 9999999997
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=8.7e-21 Score=198.28 Aligned_cols=195 Identities=12% Similarity=0.188 Sum_probs=165.9
Q ss_pred cEEEEEEc--CCceEEEEecCCCCeeEEEEEcCC---CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 016446 143 HVQEIKIS--PGIMLLIFNRSSSHVPLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 217 (389)
Q Consensus 143 ~V~~vafS--~g~~la~~~~~s~d~tiklWd~~t---G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t 217 (389)
...+|+++ +.+.||+++.. +-|-+||+.- .+.+..|..|...+..+.|++..+.+|++||.|++||+||++.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~n---G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTN---GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred ehhhcccccchhhhheeecCC---CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 45667777 68899988655 6899999976 5677889999999999999977788999999999999999999
Q ss_pred CeEEEEcccCCCceEEEEEcC-CCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 218 AELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 218 g~~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
..-..++.+....|+.|.|+| ++..|+++. .|.+++||++ .+|..-|..|.++ |..+.++|++.+||+|++
T Consensus 166 ~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp-----V~c~nwhPnr~~lATGGR 240 (839)
T KOG0269|consen 166 KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP-----VLCLNWHPNREWLATGGR 240 (839)
T ss_pred ccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc-----eEEEeecCCCceeeecCC
Confidence 999999999999999999998 688899998 8899999995 6788899999998 799999999999999865
Q ss_pred CCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC
Q 016446 294 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 373 (389)
Q Consensus 294 D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~ 373 (389)
|++|||||..+++.-..+.-|+. .+|..|.|=|+.+
T Consensus 241 -----------DK~vkiWd~t~~~~~~~~tInTi---------------------------------apv~rVkWRP~~~ 276 (839)
T KOG0269|consen 241 -----------DKMVKIWDMTDSRAKPKHTINTI---------------------------------APVGRVKWRPARS 276 (839)
T ss_pred -----------CccEEEEeccCCCccceeEEeec---------------------------------ceeeeeeeccCcc
Confidence 59999999876553322222332 5899999999986
Q ss_pred -EEEEec--CCCcEEEccC
Q 016446 374 -EIYTGN--RHGLVHVWSN 389 (389)
Q Consensus 374 -~LaSgs--~D~tIrlW~~ 389 (389)
.|||.+ .|-.|++||.
T Consensus 277 ~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred chhhhhhccccceEEEEee
Confidence 577777 6889999984
No 143
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.2e-18 Score=167.14 Aligned_cols=239 Identities=11% Similarity=0.122 Sum_probs=180.0
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
.|.+|.|+ |.++.|+-+|.||++||+|+..-++...+. +..+.+++|-|...++++ +-|+.||+.|+.+|+..+.
T Consensus 15 ~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G---~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 15 GISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTG---GLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred ceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEe---ccCceEEEEEecCCcceee
Confidence 45679999 777777777899999999998777777775 689999999987777776 4568999999999988876
Q ss_pred EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--
Q 016446 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-- 257 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-- 257 (389)
.. |...+..|.++ +-.+.+++||+|++||+||.+...+..++.... .|.+. +-.|..|+.|. |..|-+||+.
T Consensus 91 gt-h~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~--~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 91 GT-HDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM--DVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cc-CCCceEEEEee-ccCCeEEEcccCccEEEEeccccccccccccCc-eEEEE--eccCCEEEEeecCceEEEEEcccc
Confidence 65 77899999998 667899999999999999998755555544333 55544 44566677765 9999999995
Q ss_pred CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC----eEEEEecCCCCCCCccc
Q 016446 258 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG----KCLAKINATNCSPKVDD 333 (389)
Q Consensus 258 G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg----~~l~tl~gH~~~~~~~~ 333 (389)
.+..+.-+ .... ..+++|++-|++.=.|.+|-| |-|-+=.+... +--..++.|...
T Consensus 166 ~~~~q~re-S~lk---yqtR~v~~~pn~eGy~~sSie-----------GRVavE~~d~s~~~~skkyaFkCHr~~----- 225 (323)
T KOG1036|consen 166 DEPFQRRE-SSLK---YQTRCVALVPNGEGYVVSSIE-----------GRVAVEYFDDSEEAQSKKYAFKCHRLS----- 225 (323)
T ss_pred cchhhhcc-ccce---eEEEEEEEecCCCceEEEeec-----------ceEEEEccCCchHHhhhceeEEeeecc-----
Confidence 33332111 1111 127999999988877877764 77777666555 334567888721
Q ss_pred ccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 334 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.+++. +. -+|++++|+|--+++|||+.||.|-+||.
T Consensus 226 ------------~~~~~-~~-------yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 226 ------------EKDTE-II-------YPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred ------------cCCce-EE-------EEeceeEeccccceEEecCCCceEEEccC
Confidence 11121 11 49999999999999999999999999983
No 144
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=1.6e-17 Score=167.51 Aligned_cols=321 Identities=12% Similarity=0.099 Sum_probs=233.9
Q ss_pred cccEEEEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 3 RTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 3 ~~~v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
|.-|.++.|. +.-++++..+|+|-+|+..+.+..++... |...|.++-.-.+|. |.| |+.| |.+-+|
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~a-H~ggv~~L~~lr~Gt-llS----GgKD------Rki~~W 313 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHA-HDGGVFSLCMLRDGT-LLS----GGKD------RKIILW 313 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeee-cCCceEEEEEecCcc-Eee----cCcc------ceEEec
Confidence 3568999999 66699999999999999998899999885 569999999999998 455 6777 777777
Q ss_pred Eec--------------------cCCCC------Ccc-------eeEeeecccC---ceeEEEecCCCeEEEEecCCCeE
Q 016446 82 YIR--------------------RGKPD------SGF-------ALFESESLKW---PGFVEFDDVNGKVLTYSAQDSIY 125 (389)
Q Consensus 82 ~i~--------------------~g~~~------~~~-------~l~~~~~~~~---~~~v~Fs~pdG~~Las~s~D~ti 125 (389)
|=. .|+.+ ... .-|+...++| .+.+|-. |+-.+++++++|+++
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PSKNQLLTCGQDKHV 392 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CChhheeeccCcceE
Confidence 621 11111 000 0122223333 3347886 778889999999999
Q ss_pred EEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE
Q 016446 126 KVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 204 (389)
Q Consensus 126 klWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~ 204 (389)
+||+ .-+++.+-. .+.+.+++|.|.+.+|.+... +-.-+.|+++-.++ ++..-..++..|.|+ |+|..||.+
T Consensus 393 ~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~---G~w~V~d~e~~~lv-~~~~d~~~ls~v~ys-p~G~~lAvg 465 (626)
T KOG2106|consen 393 RLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTAT---GRWFVLDTETQDLV-TIHTDNEQLSVVRYS-PDGAFLAVG 465 (626)
T ss_pred EEcc--CCceeEEEEecCceeEeeccCcceEEEeecc---ceEEEEecccceeE-EEEecCCceEEEEEc-CCCCEEEEe
Confidence 9999 666776665 789999999985588887555 56778899984444 444336788999998 899999999
Q ss_pred eCCCcEEEEECC-CCeEEEEcc-cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc---------------EEEEecc
Q 016446 205 QENENLQILDVR-NAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE---------------LVTSFED 266 (389)
Q Consensus 205 s~D~tIklWd~~-tg~~~~~l~-gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~---------------~l~tl~g 266 (389)
+.|+.|.|+-+. +|....... -|..++..+.||+|+++|.+-+ |-.|-.|....- |.--|+-
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v 545 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEV 545 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEE
Confidence 999999999886 455544432 2337899999999999999999 999999953221 1111110
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe---EEEEecCCCCCCCcccccCCCCCCCc
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLAKINATNCSPKVDDELGSSSTGKS 343 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~---~l~tl~gH~~~~~~~~~~~~~~~~~~ 343 (389)
-.. ..+..++.++-|.+.++||+|-+ -|+|+|+.-.--+ .-+.+.||.
T Consensus 546 ~g~-s~~t~i~a~~rs~~~~~lA~gdd-----------~g~v~lf~yPc~s~rA~~he~~ghs----------------- 596 (626)
T KOG2106|consen 546 FGG-SDGTDINAVARSHCEKLLASGDD-----------FGKVHLFSYPCSSPRAPSHEYGGHS----------------- 596 (626)
T ss_pred ecc-cCCchHHHhhhhhhhhhhhcccc-----------CceEEEEccccCCCcccceeecccc-----------------
Confidence 000 01123678888889999998743 4999999743111 223444554
Q ss_pred cccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|.+|+|.-+.+.|.|.+.|..|-.|+.
T Consensus 597 -----------------~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 -----------------SHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred -----------------ceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 68999999999999999999999999974
No 145
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.82 E-value=6.1e-19 Score=175.65 Aligned_cols=232 Identities=15% Similarity=0.201 Sum_probs=175.8
Q ss_pred ccEEEEEecCceEEEEeccc--cee--------eeeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEe
Q 016446 13 RDIVFALAHSGVCAAFSRET--NRR--------ICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~t--g~~--------l~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
-.+||+.+.++.+.+||..+ ++. -..|.||+. .=.++.||+.-+ +|++ +++| +++.+|
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~~~g~Lls----~~~d------~~i~lw 205 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQQEGTLLS----GSDD------HTICLW 205 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccccceeEee----ccCC------CcEEEE
Confidence 46899999999999999753 222 226888874 467899999855 5666 5688 899999
Q ss_pred EeccCCC----CCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC--CeEEEEec--CCcEEEEEEcC--
Q 016446 82 YIRRGKP----DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSIS--DKHVQEIKISP-- 151 (389)
Q Consensus 82 ~i~~g~~----~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~--g~~l~tl~--~~~V~~vafS~-- 151 (389)
|+..... ...+..|. .+...+..|+|.+-+..+++|++.|+.+.|||+.+ -++..+.+ ...|++|+|+|
T Consensus 206 di~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~ 284 (422)
T KOG0264|consen 206 DINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN 284 (422)
T ss_pred eccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC
Confidence 9944332 22233443 44445677999977889999999999999999984 33444443 57899999995
Q ss_pred CceEEEEecCCCCeeEEEEEcCC-CeEEEEEeecCCceeEEEEEecCCCe-EEEEeCCCcEEEEECCC-Ce---------
Q 016446 152 GIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRN-AE--------- 219 (389)
Q Consensus 152 g~~la~~~~~s~d~tiklWd~~t-G~~l~tl~~~~~~~~~v~f~~~~~~~-l~~~s~D~tIklWd~~t-g~--------- 219 (389)
+-.||++ |.|+||+|||+++ -+++.+|.+|...|..|.|+ |+.+. ||+++.|+.+.+||+.. |+
T Consensus 285 ~~ilAT~---S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS-Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 285 EFILATG---SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS-PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CceEEec---cCCCcEEEeechhcccCceeccCCCcceEEEEeC-CCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 6666654 5679999999986 46889999999999999999 55555 45567999999999964 22
Q ss_pred ----EEEEcccCCCceEEEEEcCCCcE-EEEEc-CCeEEEEeCCCcE
Q 016446 220 ----LMEVSRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVWNFRGEL 260 (389)
Q Consensus 220 ----~~~~l~gh~~~v~sv~fspdg~~-laS~s-D~tIklWd~~G~~ 260 (389)
++-+=.||...|..+.|+|.-.. ++|.+ |+.++||....-+
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENI 407 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccc
Confidence 22334799999999999997664 55667 9999999986543
No 146
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.7e-18 Score=170.52 Aligned_cols=221 Identities=15% Similarity=0.167 Sum_probs=175.3
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCC
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSS 163 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~ 163 (389)
++|+.+...+++. .|.+.+..++|+|-|.+.|||||.|.+|+||++-.+-+.+.+
T Consensus 66 k~Gr~d~~~P~v~-GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------------------ 120 (472)
T KOG0303|consen 66 KTGRMDASYPLVC-GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------------------ 120 (472)
T ss_pred cccccCCCCCCcc-CccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------------------
Confidence 4687766666665 566677889999778899999999999999998433221111
Q ss_pred CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEE
Q 016446 164 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 164 d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
+ +....|.+|+.+|.-|++++.-...|++++.|.+|+|||+.||+.+-++. |.+.|+++.|+.||.+|
T Consensus 121 ----------t-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l 188 (472)
T KOG0303|consen 121 ----------T-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLL 188 (472)
T ss_pred ----------c-cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCcee
Confidence 1 67788999999999999996556788889999999999999999999888 99999999999999999
Q ss_pred EEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC---CeE
Q 016446 244 LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---GKC 318 (389)
Q Consensus 244 aS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t---g~~ 318 (389)
++.+ |+.|||||.. |+.+..-.+|.+.-+ ..+.|-.+|+ |++.+.. -.++..|-|||-.+ .--
T Consensus 189 ~TtckDKkvRv~dpr~~~~v~e~~~heG~k~----~Raifl~~g~-i~tTGfs-------r~seRq~aLwdp~nl~eP~~ 256 (472)
T KOG0303|consen 189 CTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP----ARAIFLASGK-IFTTGFS-------RMSERQIALWDPNNLEEPIA 256 (472)
T ss_pred eeecccceeEEEcCCCCcEeeecccccCCCc----ceeEEeccCc-eeeeccc-------cccccceeccCcccccCcce
Confidence 9999 9999999997 999998888887532 5677889999 4544443 24678999998543 334
Q ss_pred EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec-CCCcEEEcc
Q 016446 319 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWS 388 (389)
Q Consensus 319 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs-~D~tIrlW~ 388 (389)
+++|..- +.|.==.|+||-++|+-++ .|+.||.+.
T Consensus 257 ~~elDtS-----------------------------------nGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 257 LQELDTS-----------------------------------NGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eEEeccC-----------------------------------CceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 4555433 3677778999999887655 799999764
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=5.9e-19 Score=175.54 Aligned_cols=228 Identities=11% Similarity=0.123 Sum_probs=170.5
Q ss_pred CCeEEEEecCCCeEEEEeCCC---CeEEEEe--------------------cCCcEEEEEEc-C-CceEEEEecCCCCee
Q 016446 112 NGKVLTYSAQDSIYKVFDLKN---YTMLYSI--------------------SDKHVQEIKIS-P-GIMLLIFNRSSSHVP 166 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~---g~~l~tl--------------------~~~~V~~vafS-~-g~~la~~~~~s~d~t 166 (389)
-|.++|-|..|.+|.||||.= -.+..+| |.+.|.++++. . -..||++ |.|+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg---saD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG---SADKT 267 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec---CCCce
Confidence 378999999999999999842 1222333 12357788888 3 6677654 67799
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEE-E
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL-T 245 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~la-S 245 (389)
|+|||+.+|+|-+++++|++.|..++|.+..++.|++||+|++++|.|++.-.+...--.-...|..|+|.|.....+ .
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEE
Confidence 999999999999999999999999999988889999999999999999984222111111235789999988776543 4
Q ss_pred Ec-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 246 FR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 246 ~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
+. ||+++-.|++ |+++.++..|... |.++.+++.-..+.+. +|.|++||||++.- ..-...
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~-----ISgl~~n~~~p~~l~t----------~s~d~~Vklw~~~~-~~~~~v 411 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDE-----ISGLSVNIQTPGLLST----------ASTDKVVKLWKFDV-DSPKSV 411 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCC-----cceEEecCCCCcceee----------ccccceEEEEeecC-CCCccc
Confidence 44 9999999995 8999999999987 7999999876654442 24569999999763 222222
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC-EEEEecCCCcEEEccC
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 389 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~-~LaSgs~D~tIrlW~~ 389 (389)
..|.- .+....|.++.|+-- +||.|+..+.+|+||+
T Consensus 412 ~~~~~-------------------------------~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 412 KEHSF-------------------------------KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred ccccc-------------------------------cccceeecccCCCcceEEEecCccceEEEeec
Confidence 33431 113566778888764 6888888889999985
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=1.7e-18 Score=165.40 Aligned_cols=212 Identities=11% Similarity=0.104 Sum_probs=164.4
Q ss_pred EEecCCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCe-------EEEEEe--------ecCCceeEEEEEecCCC
Q 016446 137 YSISDKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGT-------VLKVFY--------HLLHRNKKVDFIEQFNE 199 (389)
Q Consensus 137 ~tl~~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~-------~l~tl~--------~~~~~~~~v~f~~~~~~ 199 (389)
...|++.|+++.+-+ |++++++ +.|+.|-+||+++-. ..+... +|-=.+.++.+-|.|.+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSG---gadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSG---GADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred eccCCCccceeeeccccceEEeec---CCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 344678898988884 8888875 556899999998633 222221 33344677788877889
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC---cEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCC
Q 016446 200 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN---QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 274 (389)
Q Consensus 200 ~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg---~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~ 274 (389)
.+.++|.|+|+|+||..|-+..-.|+= .+.|++-++||=. -++|+|. |-.|+|.|+. |.+-.+|.||...
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~---- 190 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG---- 190 (397)
T ss_pred eeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc----
Confidence 999999999999999998777666543 3468888888843 4788887 8899999997 9999999999876
Q ss_pred CeeEEEECCCCCEE-EEEecCCCcccccCCCCCeEEEEeCCCC-eEEEEecCCCCCCCcccccCCCCCCCccccccccce
Q 016446 275 NTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 352 (389)
Q Consensus 275 ~v~sv~fSpdG~~l-aS~s~D~~~~~~~~s~D~tIklWd~~tg-~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
|.+|.+||...++ |+|| .||+||+||+..- -|..+|.-|+. +..-+
T Consensus 191 -vlaV~Wsp~~e~vLatgs-----------aDg~irlWDiRrasgcf~~lD~hn~--------------------k~~p~ 238 (397)
T KOG4283|consen 191 -VLAVEWSPSSEWVLATGS-----------ADGAIRLWDIRRASGCFRVLDQHNT--------------------KRPPI 238 (397)
T ss_pred -eEEEEeccCceeEEEecC-----------CCceEEEEEeecccceeEEeecccC--------------------ccCcc
Confidence 8999999988875 5554 4699999999865 69999999982 11112
Q ss_pred ecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 353 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 353 ~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..+-..|-..|.+++|+.||..|++.+.|..+|+|+
T Consensus 239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred ccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 223334446999999999999999999999999997
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=8.3e-19 Score=171.77 Aligned_cols=195 Identities=13% Similarity=0.196 Sum_probs=157.8
Q ss_pred CcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCC----------------CeEEEEEeecCCceeEEEEEecCCCeEEE
Q 016446 142 KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIED----------------GTVLKVFYHLLHRNKKVDFIEQFNEKLLV 203 (389)
Q Consensus 142 ~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~t----------------G~~l~tl~~~~~~~~~v~f~~~~~~~l~~ 203 (389)
+.|+.|+-++ ...++++= +.-+.|++||+.. -+.+.++.+|.+.-+.++|++.-.+.|++
T Consensus 152 g~~NRvr~~~~~~~~~~asw--se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASW--SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccceeeecccCCcceeeee--cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 4566666662 34443332 3347899999852 34677888998888999999655678888
Q ss_pred EeCCCcEEEEECCCCeE---EEEcccCCCceEEEEEcCC-CcEEEEEc-CCeEEEEeCC-C---cEEEEeccCcCCcCCC
Q 016446 204 KQENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDC 274 (389)
Q Consensus 204 ~s~D~tIklWd~~tg~~---~~~l~gh~~~v~sv~fspd-g~~laS~s-D~tIklWd~~-G---~~l~tl~gh~~~~~~~ 274 (389)
|---+.|++|...+|.- .+-|.+|+..|..+.+||. ...|||+| |++|||||++ | .|+.+ +.|..-
T Consensus 230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD---- 304 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD---- 304 (440)
T ss_pred CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc----
Confidence 88889999999999874 3346789999999999994 55788888 9999999997 7 46666 788775
Q ss_pred CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC---CeEEEEecCCCCCCCcccccCCCCCCCccccccccc
Q 016446 275 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 351 (389)
Q Consensus 275 ~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t---g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (389)
|+-|.|+.+-.+||||+. ||+++|||+++ |+.+++++-|.
T Consensus 305 -VNVISWnr~~~lLasG~D-----------dGt~~iwDLR~~~~~~pVA~fk~Hk------------------------- 347 (440)
T KOG0302|consen 305 -VNVISWNRREPLLASGGD-----------DGTLSIWDLRQFKSGQPVATFKYHK------------------------- 347 (440)
T ss_pred -eeeEEccCCcceeeecCC-----------CceEEEEEhhhccCCCcceeEEecc-------------------------
Confidence 899999999999999865 49999999975 88899999998
Q ss_pred eecccccccCCEEEEEECCC-CCEEEEecCCCcEEEccC
Q 016446 352 IRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 352 ~~~~~~~~~~~V~svafSpd-g~~LaSgs~D~tIrlW~~ 389 (389)
.+|++|.|+|. ...|+.++.|..|.|||.
T Consensus 348 ---------~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 348 ---------APITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred ---------CCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 59999999985 467888899999999984
No 150
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=2.7e-17 Score=168.81 Aligned_cols=236 Identities=10% Similarity=0.058 Sum_probs=167.8
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 103 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~ 103 (389)
.+.+||.+ |...+.+..+. +.+.+.+|||||+.|+.++.. +.+ .++.++++..|+. ..+.. ..++.
T Consensus 180 ~l~~~d~d-g~~~~~lt~~~-~~~~~p~wSPDG~~la~~s~~-~g~------~~i~i~dl~~G~~---~~l~~--~~~~~ 245 (429)
T PRK03629 180 ELRVSDYD-GYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFE-SGR------SALVIQTLANGAV---RQVAS--FPRHN 245 (429)
T ss_pred eEEEEcCC-CCCCEEeecCC-CceeeeEEcCCCCEEEEEEec-CCC------cEEEEEECCCCCe---EEccC--CCCCc
Confidence 68888886 76667776654 789999999999999987643 233 5788899888864 22321 22344
Q ss_pred eeEEEecCCCeEEEEe-cCCC--eEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 104 GFVEFDDVNGKVLTYS-AQDS--IYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~-s~D~--tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
..++|| |||+.|+.. +.++ .|.+||++++++..... ...+.+.+|| +|+.|+..+..+....|.++|+.+|+.
T Consensus 246 ~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~- 323 (429)
T PRK03629 246 GAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP- 323 (429)
T ss_pred CCeEEC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-
Confidence 568998 999988865 3344 58899998887654333 3467889999 588887765333223455557777765
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEe-C--CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCe---E
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-E--NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT---V 251 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s-~--D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~t---I 251 (389)
+.+..+.+......|+ |++.+|+..+ . ...|.+||+++|+.......+ ...+..|+|||+.|+.++ |+. +
T Consensus 324 ~~lt~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 QRITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred EEeecCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 4444444555678887 7888888865 2 246889999999865543332 345788999999999987 663 6
Q ss_pred EEEeCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 252 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 252 klWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
.+++++|+..+.|.+|... +...+|||
T Consensus 401 ~~~~~~G~~~~~l~~~~~~-----~~~p~Wsp 427 (429)
T PRK03629 401 NLVSTDGRFKARLPATDGQ-----VKFPAWSP 427 (429)
T ss_pred EEEECCCCCeEECccCCCC-----cCCcccCC
Confidence 7888899988999888765 57788887
No 151
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.9e-18 Score=170.44 Aligned_cols=232 Identities=18% Similarity=0.267 Sum_probs=178.6
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe---EEEEec--CCcEEEEEEcC-Cc-eEEEEecCCCCeeEEEEE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS--DKHVQEIKISP-GI-MLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~---~l~tl~--~~~V~~vafS~-g~-~la~~~~~s~d~tiklWd 171 (389)
.-+.|.+|.|. |.-++|..|+.|+++||+.+ +|+ .+++++ .-.|.+..|.| |. .++++ +....+..||
T Consensus 212 s~~~I~sv~FH-p~~plllvaG~d~~lrifqv-DGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s---~rrky~ysyD 286 (514)
T KOG2055|consen 212 SHGGITSVQFH-PTAPLLLVAGLDGTLRIFQV-DGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS---GRRKYLYSYD 286 (514)
T ss_pred CcCCceEEEec-CCCceEEEecCCCcEEEEEe-cCccChhheeeeeccCccceeeecCCCceEEEec---ccceEEEEee
Confidence 33457789997 99999999999999999998 555 566665 57999999995 66 55554 4448999999
Q ss_pred cCCCeEEEE--EeecCCce-eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-
Q 016446 172 IEDGTVLKV--FYHLLHRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR- 247 (389)
Q Consensus 172 ~~tG~~l~t--l~~~~~~~-~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s- 247 (389)
+++++..+. +.++.... .....+ +++..||..+..|-|.|--..|++.+.+++ -.+.|..++|+.||+.|..++
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ccccccccccCCCCcccchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcC
Confidence 999887653 22332222 223333 778899999999999999999999988876 345799999999999888776
Q ss_pred CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC------CeEEE
Q 016446 248 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT------GKCLA 320 (389)
Q Consensus 248 D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t------g~~l~ 320 (389)
+|.|-+||++ -.|++++.+...-+ =.+++.|++|+|||+||.. |-|+|+|.++ -+.+.
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v~----gts~~~S~ng~ylA~GS~~-----------GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSVH----GTSLCISLNGSYLATGSDS-----------GIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred CceEEEEecCCcceEEEEeecCccc----eeeeeecCCCceEEeccCc-----------ceEEEeccchhhccCCCCchh
Confidence 9999999997 88999998765432 3799999999999998764 9999999542 11222
Q ss_pred EecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecC--CCcEEE
Q 016446 321 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR--HGLVHV 386 (389)
Q Consensus 321 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~--D~tIrl 386 (389)
++..- .-.|+++.|+||+|+||-+|+ +..+||
T Consensus 430 ~~dNL----------------------------------tt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 430 TVDNL----------------------------------TTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred hhhhh----------------------------------heeeeeeeeCcchhhhhhhhhccccceEE
Confidence 22111 148999999999999998884 566665
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=1.7e-18 Score=178.21 Aligned_cols=296 Identities=14% Similarity=0.128 Sum_probs=191.7
Q ss_pred ccEEEEEecCceEEEEecccc------eeeeeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEeEecc
Q 016446 13 RDIVFALAHSGVCAAFSRETN------RRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRR 85 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg------~~l~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~~i~~ 85 (389)
..+||.+.++|-|.|+|...= +.|+.+..| .+.|..+.+-| |+ .|+++ +-| +++++||+++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH-~nAifDl~wap-ge~~lVsa----sGD------sT~r~Wdvk~ 131 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAH-KNAIFDLKWAP-GESLLVSA----SGD------STIRPWDVKT 131 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccc-cceeEeeccCC-CceeEEEc----cCC------ceeeeeeecc
Confidence 679999999999999997531 225566665 59999999999 66 55564 355 8999999999
Q ss_pred CCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCC-CCeEEEEecCC----cEEEEEEcCCceEEEEec
Q 016446 86 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDK----HVQEIKISPGIMLLIFNR 160 (389)
Q Consensus 86 g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~-~g~~l~tl~~~----~V~~vafS~g~~la~~~~ 160 (389)
+++......+ +|.+.+.+++|.+-|-..+++|+.|+.|.|||+. ++.-....... ....-- -|.+-+.
T Consensus 132 s~l~G~~~~~--GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-tpskp~~---- 204 (720)
T KOG0321|consen 132 SRLVGGRLNL--GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-TPSKPLK---- 204 (720)
T ss_pred ceeecceeec--ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-CCCchhh----
Confidence 9986555344 4566677899995556678999999999999974 22100000000 000000 1222221
Q ss_pred CCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeC-CCcEEEEECCCCeE------EEEc--ccC---C
Q 016446 161 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNAEL------MEVS--RTE---F 228 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~-D~tIklWd~~tg~~------~~~l--~gh---~ 228 (389)
.-++=|-...+. +. +.|..|.| .|+..||+++. |++||+||++...+ +... ..| .
T Consensus 205 ----kr~~k~kA~s~t----i~---ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs 271 (720)
T KOG0321|consen 205 ----KRIRKWKAASNT----IF---SSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRS 271 (720)
T ss_pred ----ccccccccccCc----ee---eeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccce
Confidence 123333333221 11 23455666 57788888774 99999999987544 2222 223 1
Q ss_pred CceEEEEEcCCCc-EEEEEcCCeEEEEeCCC---cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 229 MTPSAFIFLYENQ-LFLTFRNRTVAVWNFRG---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 229 ~~v~sv~fspdg~-~laS~sD~tIklWd~~G---~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
-.+..+..-.-|. ++|++.|++|-.||+.+ ..+..+.||...- .+|. -..|||+++|+||+.|
T Consensus 272 ~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s--f~vk-s~lSpd~~~l~SgSsd---------- 338 (720)
T KOG0321|consen 272 VGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS--FYVK-SELSPDDCSLLSGSSD---------- 338 (720)
T ss_pred eeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce--eeee-eecCCCCceEeccCCC----------
Confidence 1233333333344 55555699999999853 2455666665321 1222 3469999999998765
Q ss_pred CCeEEEEeCCCCe-EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECC--CCCEEEEecCC
Q 016446 305 AGSINVSSILTGK-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE--ERNEIYTGNRH 381 (389)
Q Consensus 305 D~tIklWd~~tg~-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp--dg~~LaSgs~D 381 (389)
.-+.+|.+.+-+ ....|.||+ ..|++|.+.| ++. +|++|+|
T Consensus 339 -~~ayiw~vs~~e~~~~~l~Ght----------------------------------~eVt~V~w~pS~~t~-v~TcSdD 382 (720)
T KOG0321|consen 339 -EQAYIWVVSSPEAPPALLLGHT----------------------------------REVTTVRWLPSATTP-VATCSDD 382 (720)
T ss_pred -cceeeeeecCccCChhhhhCcc----------------------------------eEEEEEeeccccCCC-ceeeccC
Confidence 899999998744 456678887 6899999876 445 5555999
Q ss_pred CcEEEccC
Q 016446 382 GLVHVWSN 389 (389)
Q Consensus 382 ~tIrlW~~ 389 (389)
.++++|+.
T Consensus 383 ~~~kiW~l 390 (720)
T KOG0321|consen 383 FRVKIWRL 390 (720)
T ss_pred cceEEEec
Confidence 99999974
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=5.2e-18 Score=170.71 Aligned_cols=278 Identities=10% Similarity=0.067 Sum_probs=196.2
Q ss_pred EEEEecCceEEEEecccceeeeeeecCC-cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCccee
Q 016446 16 VFALAHSGVCAAFSRETNRRICFLNVSP-DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 94 (389)
Q Consensus 16 ~a~~~~~gtiklW~~~tg~~l~tl~~~~-~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l 94 (389)
+-.++..-++||||...-...-.+..|. ...+.++-|+..+. |+.+|. +.| ..+++|. +.|+. ...++
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~--~gd------k~~~~~~-K~g~~-~~Vp~ 73 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASM--AGD------KVMRIKE-KDGKT-PEVPR 73 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeec--CCc------eeEEEec-ccCCC-Cccce
Confidence 5556667789999975322221222222 23589999999876 666653 344 5666776 55652 11221
Q ss_pred EeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEE
Q 016446 95 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 95 ~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd 171 (389)
-..........|+-. .-..++++|+..++|||||+..-.+.+.++ ...|..|.+. .+.+||+.+-+ +.|-|-.
T Consensus 74 ~~k~~gd~~~Cv~~~-s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~g---Gdiiih~ 149 (673)
T KOG4378|consen 74 VRKLTGDNAFCVACA-SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDG---GDIIIHG 149 (673)
T ss_pred eeccccchHHHHhhh-hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccC---CcEEEEe
Confidence 110000011123221 123799999999999999997444556665 4689999999 79999887544 6788999
Q ss_pred cCCCeEEEEEeec-CCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCeE-EEEcccCCCceEEEEEcCCCc-EEEEEc
Q 016446 172 IEDGTVLKVFYHL-LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQ-LFLTFR 247 (389)
Q Consensus 172 ~~tG~~l~tl~~~-~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg~~-~~~l~gh~~~v~sv~fspdg~-~laS~s 247 (389)
+.|++.-.+|... ...++-+.|+ +....++. .+.+|+|.|||++...+ ....+.|..+-..|+|+|-.. +|+|.+
T Consensus 150 ~~t~~~tt~f~~~sgqsvRll~ys-~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 150 TKTKQKTTTFTIDSGQSVRLLRYS-PSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred cccCccccceecCCCCeEEEeecc-cccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec
Confidence 9999999999844 4556788898 44555554 78999999999987665 455788999999999999665 556668
Q ss_pred -CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEecC
Q 016446 248 -NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINA 324 (389)
Q Consensus 248 -D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~g 324 (389)
|..|-++|.. .+...+|.-. .+ ..+|+|+|+|.||+.|+. .|.|.-+|++. .+.++++.+
T Consensus 229 ~Dkki~~yD~~s~~s~~~l~y~-~P-----lstvaf~~~G~~L~aG~s-----------~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 229 YDKKINIYDIRSQASTDRLTYS-HP-----LSTVAFSECGTYLCAGNS-----------KGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred ccceEEEeecccccccceeeec-CC-----cceeeecCCceEEEeecC-----------CceEEEEecccCCCCceEeee
Confidence 9999999996 5555566532 22 589999999999999854 59999999974 557899999
Q ss_pred CC
Q 016446 325 TN 326 (389)
Q Consensus 325 H~ 326 (389)
|.
T Consensus 292 h~ 293 (673)
T KOG4378|consen 292 HD 293 (673)
T ss_pred cc
Confidence 98
No 154
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.80 E-value=2.8e-18 Score=172.84 Aligned_cols=260 Identities=17% Similarity=0.165 Sum_probs=200.5
Q ss_pred EEEEEee--ccEEEEEecCceEEEEecccce----eee---eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeee
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSRETNR----RIC---FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~~tg~----~l~---tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~ 76 (389)
|..+..+ .+.|.++. -|-||+||+. +. ++. -+|. .+.|++.-+.|||.+|+. |++- -
T Consensus 422 VcAvtIS~~trhVyTgG-kgcVKVWdis-~pg~k~PvsqLdcl~r--dnyiRSckL~pdgrtLiv----GGea------s 487 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGG-KGCVKVWDIS-QPGNKSPVSQLDCLNR--DNYIRSCKLLPDGRTLIV----GGEA------S 487 (705)
T ss_pred EEEEEecCCcceeEecC-CCeEEEeecc-CCCCCCccccccccCc--ccceeeeEecCCCceEEe----cccc------c
Confidence 5555566 66677765 5789999984 32 111 2343 478999999999999999 6776 6
Q ss_pred eeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCc
Q 016446 77 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGI 153 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~ 153 (389)
++.|||+..-.+ ..+.-....--.-++++.| ||.+...++-.||.|+|||+.+..+++.|++ +.+.+|.+| +|.
T Consensus 488 tlsiWDLAapTp--rikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt 564 (705)
T KOG0639|consen 488 TLSIWDLAAPTP--RIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT 564 (705)
T ss_pred eeeeeeccCCCc--chhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc
Confidence 667888866544 1111000000112458897 9999999999999999999999999999975 689999999 899
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEE
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA 233 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~s 233 (389)
.|-++ +-|.|||-||+++|+.++.-.. ...|+++-+. |.++.++.|=+++.+-|-.. ++.-...|.-|..-|-+
T Consensus 565 klWTG---GlDntvRcWDlregrqlqqhdF-~SQIfSLg~c-P~~dWlavGMens~vevlh~-skp~kyqlhlheScVLS 638 (705)
T KOG0639|consen 565 KLWTG---GLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYC-PTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLS 638 (705)
T ss_pred eeecC---CCccceeehhhhhhhhhhhhhh-hhhheecccC-CCccceeeecccCcEEEEec-CCccceeecccccEEEE
Confidence 99876 5678999999999987765432 2667888876 77899999999999988877 45555567789999999
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 234 FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 234 v~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
+.|.+-|+.++|.+ |+-+-.|..- |.-+-..+... . |.+..+|.|.+||++||.|
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S-s-----VlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-S-----VLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred EEecccCceeeecCchhhhhhccCccccceeeccccC-c-----ceeeeeccCceEEEecCCC
Confidence 99999999999998 9999999986 87655444332 2 7899999999999999876
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=1.1e-17 Score=167.18 Aligned_cols=295 Identities=14% Similarity=0.134 Sum_probs=210.8
Q ss_pred eeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEeEeccC-CCCCcceeEeeecccCceeEEEecCCCe
Q 016446 37 CFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRG-KPDSGFALFESESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~~i~~g-~~~~~~~l~~~~~~~~~~~v~Fs~pdG~ 114 (389)
++.-..+...|.+++|.|--+ .|+.+ |.. ..+|-+|++.+. +-..+..+|+ .+.+.|..+.|+|.|-.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~---GdK------~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAV---GDK------GGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTS 248 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEE---ccC------CCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChh
Confidence 344444568999999999855 45442 323 378889998533 3334455776 45555778999976667
Q ss_pred EEEEecCCCeEEEEeCCCCe--EEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE-EEEEeecCCce
Q 016446 115 VLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV-LKVFYHLLHRN 188 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~--~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~-l~tl~~~~~~~ 188 (389)
.+.+.|.|||||+=|++++. .++++.. .+..++.|+ ..+.++.+. .- +-..+||++++.. ...+.-|...|
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~--~~-G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD--NV-GNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee--cc-cceEEEEeecCCccchhhhhhhccc
Confidence 78889999999999998766 5667743 467889999 555554542 22 3788999998665 55666777899
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCC--eE--EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--C---
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNA--EL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--G--- 258 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg--~~--~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~--G--- 258 (389)
.+|+++|..+..||++|.|+|.||||++.- +. +--...|...|.++.|||.|=.|++-+ |.+|||||.. +
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence 999999888899999999999999999862 22 223356999999999999887788888 9999999983 2
Q ss_pred cEEEEeccCcCCc-CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCC
Q 016446 259 ELVTSFEDHLLWH-PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 337 (389)
Q Consensus 259 ~~l~tl~gh~~~~-~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~ 337 (389)
+.+.++. |.... +=....-.+|.||-.++++|-.. .-|-+.|-..||.+..|-+-..
T Consensus 406 ~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~-----------r~IDv~~~~~~q~v~el~~P~~---------- 463 (498)
T KOG4328|consen 406 EPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYP-----------RPIDVFDGNGGQMVCELHDPES---------- 463 (498)
T ss_pred Cccceee-ccCcccccccchhheeCCCccEEEEeccC-----------cceeEEcCCCCEEeeeccCccc----------
Confidence 3333433 33211 00113567899999999998654 5699999777777777644331
Q ss_pred CCCCCccccccccceecccccccCCEEE-EEECCCCCEEEEec-CCCcEEEccC
Q 016446 338 SSTGKSKKLNKSSYIRSTVGEALEDITS-LFYDEERNEIYTGN-RHGLVHVWSN 389 (389)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~V~s-vafSpdg~~LaSgs-~D~tIrlW~~ 389 (389)
..|.+ ..|+|=+..|++|+ .-|.|.||-+
T Consensus 464 -----------------------~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 464 -----------------------STIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred -----------------------cccccceeecccccceeccCCccceEEEEec
Confidence 12333 58999999666655 6788988853
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=7.6e-18 Score=162.62 Aligned_cols=234 Identities=14% Similarity=0.162 Sum_probs=179.0
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCC--------CeEE----EEec---CCcEEEEE-Ec------C-CceEEEEec
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKN--------YTML----YSIS---DKHVQEIK-IS------P-GIMLLIFNR 160 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~--------g~~l----~tl~---~~~V~~va-fS------~-g~~la~~~~ 160 (389)
....+| |||.-|.+-+.|..+++|++.. +-.. .+++ +..|.+.. +| | -.+.|++
T Consensus 53 kgckWS-PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s-- 129 (406)
T KOG2919|consen 53 KGCKWS-PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS-- 129 (406)
T ss_pred ccceeC-CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec--
Confidence 358898 9999999999999999999731 1111 1222 45565533 21 4 3344443
Q ss_pred CCCCeeEEEEEcCCCeEEEEEe--ecCCce---eEEEEEecCCCeEEEEeCCCcEEEEEC-CCCeEEEE--c-----ccC
Q 016446 161 SSSHVPLKILSIEDGTVLKVFY--HLLHRN---KKVDFIEQFNEKLLVKQENENLQILDV-RNAELMEV--S-----RTE 227 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~--~~~~~~---~~v~f~~~~~~~l~~~s~D~tIklWd~-~tg~~~~~--l-----~gh 227 (389)
+.|.+|+|||..||++...+. .|+..+ .+++|+ |||++|.+ +...+||+.|. +.|.-... . .|.
T Consensus 130 -sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 130 -SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred -cccCceeeeeccccccccchhhhhhHHhhhhheeEEec-CCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 567999999999999998876 455555 789998 67766654 57889999999 66653222 1 233
Q ss_pred CCceEEEEEcC-CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 228 FMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 228 ~~~v~sv~fsp-dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
..-+..++|+| +.+++|.++ -+++-|+.-. ++.+.+|-||.+. |.-+.|.|||..|.||++-
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG-----vThL~~~edGn~lfsGaRk---------- 271 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG-----VTHLQWCEDGNKLFSGARK---------- 271 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC-----eeeEEeccCcCeecccccC----------
Confidence 56788899999 555899998 9999999987 7899999999987 8999999999999999875
Q ss_pred CCeEEEEeCCC-CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 305 AGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 305 D~tIklWd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
|..|-.||++. ++.+..|.+|.+. |+ ++| -....|+|++||||+.||.
T Consensus 272 ~dkIl~WDiR~~~~pv~~L~rhv~~--------------------TN----------QRI-~FDld~~~~~LasG~tdG~ 320 (406)
T KOG2919|consen 272 DDKILCWDIRYSRDPVYALERHVGD--------------------TN----------QRI-LFDLDPKGEILASGDTDGS 320 (406)
T ss_pred CCeEEEEeehhccchhhhhhhhccC--------------------cc----------ceE-EEecCCCCceeeccCCCcc
Confidence 57899999975 7788999999731 11 344 3677899999999999999
Q ss_pred EEEccC
Q 016446 384 VHVWSN 389 (389)
Q Consensus 384 IrlW~~ 389 (389)
|++||+
T Consensus 321 V~vwdl 326 (406)
T KOG2919|consen 321 VRVWDL 326 (406)
T ss_pred EEEEec
Confidence 999996
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.9e-17 Score=159.44 Aligned_cols=282 Identities=15% Similarity=0.174 Sum_probs=204.1
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCe
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~ 114 (389)
+-+||...+ -.++-|||.|..||+ |-.| ..+-|||+.+-.. ++ .++ .|...+.++++| +||+
T Consensus 17 l~~tld~~~---a~~~~Fs~~G~~lAv----Gc~n------G~vvI~D~~T~~i--ar-~ls-aH~~pi~sl~WS-~dgr 78 (405)
T KOG1273|consen 17 LTHTLDNPL---AECCQFSRWGDYLAV----GCAN------GRVVIYDFDTFRI--AR-MLS-AHVRPITSLCWS-RDGR 78 (405)
T ss_pred hceeccCCc---cceEEeccCcceeee----eccC------CcEEEEEccccch--hh-hhh-ccccceeEEEec-CCCC
Confidence 445555443 589999999999999 5566 7788999876554 12 222 344556789998 9999
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCC--eEEEEEe-ecCCce
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDG--TVLKVFY-HLLHRN 188 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG--~~l~tl~-~~~~~~ 188 (389)
.|.++|.|..|++||+..|.+++.+. ...||.+.|.| ..+.+++--.. .-.+-++..+ .+|-+=. +....+
T Consensus 79 ~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~---sp~vi~~s~~~h~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 79 KLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEE---SPVVIDFSDPKHSVLPKDDDGDLNSS 155 (405)
T ss_pred EeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecC---CcEEEEecCCceeeccCCCccccccc
Confidence 99999999999999999999998887 78999999996 22332221111 1222333221 1221100 111111
Q ss_pred eE-EEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC-CceEEEEEcCCCcEEEEEc-CCeEEEEeCC-----C--
Q 016446 189 KK-VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-----G-- 258 (389)
Q Consensus 189 ~~-v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~-~~v~sv~fspdg~~laS~s-D~tIklWd~~-----G-- 258 (389)
.+ ..|. +.|++|++|-.-|.+-++|..|-+|+..++--. ..|..+.|+..|+.|+.-. |++||.++++ |
T Consensus 156 as~~~fd-r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 156 ASHGVFD-RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred ccccccc-CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence 11 1233 568899999999999999999999988877665 7899999999999999987 9999999863 2
Q ss_pred -cE--EEEec---cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcc
Q 016446 259 -EL--VTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 332 (389)
Q Consensus 259 -~~--l~tl~---gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~ 332 (389)
+. .+.|+ ....| +.+.||.||.|++.|+.- -..+.||.-..|.+++.|.|..+
T Consensus 235 ~e~e~~~K~qDvVNk~~W------k~ccfs~dgeYv~a~s~~----------aHaLYIWE~~~GsLVKILhG~kg----- 293 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQW------KKCCFSGDGEYVCAGSAR----------AHALYIWEKSIGSLVKILHGTKG----- 293 (405)
T ss_pred CCcChhHHHHHHHhhhhh------hheeecCCccEEEecccc----------ceeEEEEecCCcceeeeecCCch-----
Confidence 11 11111 22334 689999999999988753 47899999999999999988652
Q ss_pred cccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 333 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+..-.|.+.|=...|+|- .-|+|.+|.
T Consensus 294 ----------------------------E~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 294 ----------------------------EELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred ----------------------------hheeecccccceeeeeec-cCCceEEEE
Confidence 345567889999999988 788999995
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=2.2e-18 Score=166.54 Aligned_cols=226 Identities=14% Similarity=0.194 Sum_probs=170.8
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEEEEEe---ecC
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY---HLL 185 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl~---~~~ 185 (389)
..+||.|+.-|.|||-|+.++++...+ |+..|++++|.| -++++++ |.|.+|||||++++.|+..|- +|-
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~---SkD~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSA---SKDHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEe---cCCceEEEEeccCCeEEEEeccccccc
Confidence 458999999999999999999987555 678999999996 3477665 556899999999999999985 788
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc----------------------------ccCCCceEEEEEc
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS----------------------------RTEFMTPSAFIFL 237 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l----------------------------~gh~~~v~sv~fs 237 (389)
++|.+|.|+ +++++|++++.|++||+|++...+...-+ .-|...|-.|.|-
T Consensus 182 deVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 182 DEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred CcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 899999998 78999999999999999999854321111 1133333333332
Q ss_pred CCCcEEEEEc-CCeEEEEeC-C-CcE---------EEEeccCcCCcCCCCeeEEEEC--CCCCEEEEEecCCCcccccCC
Q 016446 238 YENQLFLTFR-NRTVAVWNF-R-GEL---------VTSFEDHLLWHPDCNTNNIYIT--SDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 238 pdg~~laS~s-D~tIklWd~-~-G~~---------l~tl~gh~~~~~~~~v~sv~fS--pdG~~laS~s~D~~~~~~~~s 303 (389)
|.+++|=| ++-|-.|.. + ++- -.|.-++- ..+.|.+|-+.|+ |-++.||.|...
T Consensus 261 --gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~-~~~~c~iWfirf~~d~~~~~la~gnq~--------- 328 (385)
T KOG1034|consen 261 --GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEF-DYPMCDIWFIRFAFDPWQKMLALGNQS--------- 328 (385)
T ss_pred --hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEe-ccCccceEEEEEeecHHHHHHhhccCC---------
Confidence 67888888 999999987 3 332 22333332 3456778887654 569999987653
Q ss_pred CCCeEEEEeCCCCeE--EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 304 SAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 304 ~D~tIklWd~~tg~~--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
|+|.+||+..-+. ..||.-+. .+ ..|...+||.||.+|+-...|
T Consensus 329 --g~v~vwdL~~~ep~~~ttl~~s~-------------~~-------------------~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 329 --GKVYVWDLDNNEPPKCTTLTHSK-------------SG-------------------STVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred --CcEEEEECCCCCCccCceEEecc-------------cc-------------------ceeeeeeecccCcEEEEEeCC
Confidence 9999999987554 23333222 11 589999999999999999999
Q ss_pred CcEEEcc
Q 016446 382 GLVHVWS 388 (389)
Q Consensus 382 ~tIrlW~ 388 (389)
++|--||
T Consensus 375 ~~Vwrwd 381 (385)
T KOG1034|consen 375 GTVWRWD 381 (385)
T ss_pred CcEEEEE
Confidence 9998887
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.77 E-value=9.7e-18 Score=168.82 Aligned_cols=252 Identities=13% Similarity=0.157 Sum_probs=187.6
Q ss_pred eeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe----EE-EEecCCc---EEEE
Q 016446 77 STKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----ML-YSISDKH---VQEI 147 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~----~l-~tl~~~~---V~~v 147 (389)
.++|||+..-.... -|. +.....+.++.++..+--.+|+-+.|+.|++|. +.|+ ++ ..+.++. |.+.
T Consensus 13 ~~kl~D~s~~~~~~---~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 13 KTKLSDFSDLETKS---EYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACA 88 (673)
T ss_pred ceEEeecccccCcc---ccccCCCCCcceeeeccccceEEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhh
Confidence 47889984433211 111 111112456777633334567778899999998 4555 11 2222332 4445
Q ss_pred EEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC
Q 016446 148 KISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 227 (389)
Q Consensus 148 afS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh 227 (389)
.|| .++.++ +..++|||||++.-.|.+.|++|+..|..|.++ -.+++||+.+..|.|-|-++.++..-.+|...
T Consensus 89 s~S--~y~~sg---G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 89 SQS--LYEISG---GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred hcc--eeeecc---CcCceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEEEEecccCccccceecC
Confidence 555 566544 445899999999878889999999999999998 45899999999999999999999887777554
Q ss_pred -CCceEEEEEcCCCcEEEEE-c-CCeEEEEeCCCc--EEEEeccCcCCcCCCCeeEEEECCC-CCEEEEEecCCCccccc
Q 016446 228 -FMTPSAFIFLYENQLFLTF-R-NRTVAVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWM 301 (389)
Q Consensus 228 -~~~v~sv~fspdg~~laS~-s-D~tIklWd~~G~--~l~tl~gh~~~~~~~~v~sv~fSpd-G~~laS~s~D~~~~~~~ 301 (389)
.+.|+-+.|+|-.+.|++. + +|+|.|||++|. ...-++.|..+ ...|+|||. ..+|||-+.|
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP-----~~gicfspsne~l~vsVG~D------- 230 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP-----CRGICFSPSNEALLVSVGYD------- 230 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC-----cCcceecCCccceEEEeccc-------
Confidence 4567789999988876655 7 999999999875 45667789988 479999995 5667776664
Q ss_pred CCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 302 EGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 302 ~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
..|.++|+...+...+|.... +..+|+|+|+|.+|+.|+..
T Consensus 231 ----kki~~yD~~s~~s~~~l~y~~-----------------------------------Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 231 ----KKINIYDIRSQASTDRLTYSH-----------------------------------PLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred ----ceEEEeecccccccceeeecC-----------------------------------CcceeeecCCceEEEeecCC
Confidence 899999998877777775533 78899999999999999999
Q ss_pred CcEEEccC
Q 016446 382 GLVHVWSN 389 (389)
Q Consensus 382 ~tIrlW~~ 389 (389)
|.|-.+|.
T Consensus 272 G~~i~YD~ 279 (673)
T KOG4378|consen 272 GELIAYDM 279 (673)
T ss_pred ceEEEEec
Confidence 99988773
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=3.7e-17 Score=168.94 Aligned_cols=266 Identities=14% Similarity=0.137 Sum_probs=200.9
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
..|+.|+|-|||..|+.+. . ..+.++|...|.+.++ |-. |..-+..||+| .||+..|||+.|+.
T Consensus 13 hci~d~afkPDGsqL~lAA----g-------~rlliyD~ndG~llqt--LKg--HKDtVycVAys-~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA----G-------SRLLVYDTSDGTLLQP--LKG--HKDTVYCVAYA-KDGKRFASGSADKS 76 (1081)
T ss_pred cchheeEECCCCceEEEec----C-------CEEEEEeCCCcccccc--ccc--ccceEEEEEEc-cCCceeccCCCcee
Confidence 3799999999999999852 2 3577899999987332 322 33345789998 89999999999999
Q ss_pred EEEEeCCCCeEEEEecCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEE
Q 016446 125 YKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 203 (389)
Q Consensus 125 iklWdl~~g~~l~tl~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~ 203 (389)
|-||+-+---.+.--|++.|.++.|+| .+.||+++-. ..-+|..+.-...+ -+ ...++...+|. .||++++.
T Consensus 77 VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs----dFglWS~~qK~V~K-~k-ss~R~~~CsWt-nDGqylal 149 (1081)
T KOG1538|consen 77 VIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS----DFGLWSPEQKSVSK-HK-SSSRIICCSWT-NDGQYLAL 149 (1081)
T ss_pred EEEecccccceeeeccCCeeeEeecCchHHHhhhcchh----hccccChhhhhHHh-hh-hheeEEEeeec-CCCcEEEE
Confidence 999985421122333578999999998 8888877543 46789876533222 21 13566788887 67889999
Q ss_pred EeCCCcEEEEECCCCeE---EEEcccCCCceEEEEEcCCC-----cEEEEEc-CCeEEEEeCCCcEEE---EeccCcCCc
Q 016446 204 KQENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFRGELVT---SFEDHLLWH 271 (389)
Q Consensus 204 ~s~D~tIklWd~~tg~~---~~~l~gh~~~v~sv~fspdg-----~~laS~s-D~tIklWd~~G~~l~---tl~gh~~~~ 271 (389)
|-.||||.|=|. +||. ++...|.+.+|++|+|+|.. ..++... .+|+-.+.++|+.+. +|+ ..
T Consensus 150 G~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~----Fd 224 (1081)
T KOG1538|consen 150 GMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALN----FD 224 (1081)
T ss_pred eccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCC----CC
Confidence 999999999986 5553 55566788999999999853 3566665 788888888887653 332 11
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccc
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 351 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (389)
| ..+..-|+|.|+.-|+. |+-++++- ..|-.+.|+-...
T Consensus 225 P----~CisYf~NGEy~LiGGs-----------dk~L~~fT-R~GvrLGTvg~~D------------------------- 263 (1081)
T KOG1538|consen 225 P----CCISYFTNGEYILLGGS-----------DKQLSLFT-RDGVRLGTVGEQD------------------------- 263 (1081)
T ss_pred c----hhheeccCCcEEEEccC-----------CCceEEEe-ecCeEEeeccccc-------------------------
Confidence 2 35666789999999865 58999997 6798988886533
Q ss_pred eecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 352 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 352 ~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.|||+|+..|+||+.+-|..||||..++
T Consensus 264 ---------~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 264 ---------SWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred ---------eeEEEEEEccCCceEEEEEccCeeehhh
Confidence 5999999999999999999999998765
No 161
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=8.9e-16 Score=157.45 Aligned_cols=206 Identities=11% Similarity=0.066 Sum_probs=143.3
Q ss_pred CCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCC
Q 016446 122 DSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 198 (389)
Q Consensus 122 D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~ 198 (389)
..+|.+||.. |...+.+. ...|.+.+|| +|+.||..+..+.+..|.+||+.+|+... +..+.+....++|+ |++
T Consensus 183 ~~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~S-pDG 259 (433)
T PRK04922 183 RYALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFS-PDG 259 (433)
T ss_pred eEEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceEC-CCC
Confidence 3579999984 44444443 4579999999 68889887655556789999999988643 33333455678887 788
Q ss_pred CeEEEE-eCCC--cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CCe--EEEEeCC-CcEEEEeccCcCC
Q 016446 199 EKLLVK-QENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRT--VAVWNFR-GELVTSFEDHLLW 270 (389)
Q Consensus 199 ~~l~~~-s~D~--tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~t--IklWd~~-G~~l~tl~gh~~~ 270 (389)
.+++.. +.++ .|.+||+.+|++.+ +..|......++|+|||+.|+..+ ++. |.++|+. |+. +.+..+...
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~ 337 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNY 337 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 888754 5554 69999999998755 455655567889999999888776 555 4445665 543 333322222
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccccc
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 350 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (389)
...++|||||++|+..+.+ +....|.+||+.+|+.. .|. +.
T Consensus 338 -----~~~~~~SpDG~~Ia~~~~~--------~~~~~I~v~d~~~g~~~-~Lt-~~------------------------ 378 (433)
T PRK04922 338 -----NARASVSPDGKKIAMVHGS--------GGQYRIAVMDLSTGSVR-TLT-PG------------------------ 378 (433)
T ss_pred -----ccCEEECCCCCEEEEEECC--------CCceeEEEEECCCCCeE-ECC-CC------------------------
Confidence 3478999999999987643 12347999999888764 443 22
Q ss_pred ceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 351 YIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 351 ~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
....+.+|||||++|+..+.+
T Consensus 379 ----------~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 379 ----------SLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred ----------CCCCCceECCCCCEEEEEEec
Confidence 123457899999988877754
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=4.3e-17 Score=162.33 Aligned_cols=200 Identities=18% Similarity=0.214 Sum_probs=145.3
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEE-
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVL- 178 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l- 178 (389)
.++++.--.-.+|||||.|+||+|||+.+|+|..++. +..|.+++|.| .+.|+++ +.|++|+|-|.+.-.+.
T Consensus 247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG---s~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSG---SYDGTVALKDCRDPSNSG 323 (463)
T ss_pred HHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEec---cccceEEeeeccCccccC
Confidence 4455542334689999999999999999999988885 67999999995 7788775 66799999998731111
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEEcCCCc-EEEEEc-CCeEEEEe
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWN 255 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fspdg~-~laS~s-D~tIklWd 255 (389)
+..+ -.+.+..|++.+.....++++..||+++=.|++. |+++.++..|.+.|..+.+++.-. +|+|++ |++||||+
T Consensus 324 ~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 324 KEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred ceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 2222 2377888999855556777788999999999996 699999999999999999988655 566778 99999999
Q ss_pred CCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 256 FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 256 ~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
+.+.--+.-..|.... ....+.++-|+--+..+. +|..+-+||||+.+...+
T Consensus 403 ~~~~~~~~v~~~~~~~--~rl~c~~~~~~~a~~la~----------GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKL--GRLHCFALDPDVAFTLAF----------GGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCcccccccccc--cceeecccCCCcceEEEe----------cCccceEEEeecccChhH
Confidence 8643222222333211 113455666665444433 234578999998876543
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=3.7e-17 Score=163.35 Aligned_cols=239 Identities=16% Similarity=0.233 Sum_probs=167.7
Q ss_pred ccCceeEEEecCCC-eEEEEecCCCeEEEEeCC------CCeEEEEecCCcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 100 LKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLK------NYTMLYSISDKHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG-~~Las~s~D~tiklWdl~------~g~~l~tl~~~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
.+-+.+++|.|-.. +++|.|+.-|+|-|||+. +|-.+++.|...|.++.|+| -.++.++ |.|+|||+=
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss---SyDGtiR~~ 262 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS---SYDGTIRLQ 262 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee---ccCceeeee
Confidence 34466799985444 789999999999999994 22234555678999999995 3344443 567999999
Q ss_pred EcCCCeEEEEEee--cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEEcccCCCceEEEEEcCCC-cEEEEE
Q 016446 171 SIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYEN-QLFLTF 246 (389)
Q Consensus 171 d~~tG~~l~tl~~--~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-~~~l~gh~~~v~sv~fspdg-~~laS~ 246 (389)
|++++...-.+.. ........+|+ .+...++++..=|...+||.+++.- ..-++-|...|.+|+++|-. ++|||+
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~ 341 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA 341 (498)
T ss_pred eecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence 9998764433332 22333566665 3455666666444999999998654 66677899999999999955 578899
Q ss_pred c-CCeEEEEeCC---Cc---EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC----C
Q 016446 247 R-NRTVAVWNFR---GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL----T 315 (389)
Q Consensus 247 s-D~tIklWd~~---G~---~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~----t 315 (389)
+ |+|.||||++ ++ .|.++ .|... |++++|||+|-.|++.|.| .+|||||.. -
T Consensus 342 s~D~T~kIWD~R~l~~K~sp~lst~-~Hrrs-----V~sAyFSPs~gtl~TT~~D-----------~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKASPFLSTL-PHRRS-----VNSAYFSPSGGTLLTTCQD-----------NEIRVFDSSCISAK 404 (498)
T ss_pred ccCcceeeeehhhhcCCCCcceecc-cccce-----eeeeEEcCCCCceEeeccC-----------CceEEeeccccccc
Confidence 9 9999999983 33 35555 47765 8999999999889998875 799999953 1
Q ss_pred CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 316 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 316 g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
-+.+.++ -|. ..-++++.+ .-.+|.||-.+++.|-.-..|-+.|
T Consensus 405 ~~p~~~I-~Hn---------------------------~~t~RwlT~-fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 405 DEPLGTI-PHN---------------------------NRTGRWLTP-FKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CCcccee-ecc---------------------------Ccccccccc-hhheeCCCccEEEEeccCcceeEEc
Confidence 1122222 233 222333333 3468899999999887666565543
No 164
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=3.8e-16 Score=160.18 Aligned_cols=237 Identities=11% Similarity=0.043 Sum_probs=163.6
Q ss_pred ceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccC
Q 016446 23 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 102 (389)
Q Consensus 23 gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~ 102 (389)
.+|.+||.+ |.+.+.+..+. +.+.+.+|||||+.|+.++... .+ .++.+|++..|+. ..+.. ..+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~-~~v~~p~wSpDg~~la~~s~~~-~~------~~l~~~dl~~g~~---~~l~~--~~g~ 249 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSA-EPILSPAWSPDGKKLAYVSFER-GR------SAIYVQDLATGQR---ELVAS--FRGI 249 (433)
T ss_pred EEEEEECCC-CCCceEeecCC-CccccccCCCCCCEEEEEecCC-CC------cEEEEEECCCCCE---EEecc--CCCC
Confidence 468999985 77777787765 7899999999999999976432 23 5788899888764 22321 2233
Q ss_pred ceeEEEecCCCeEEE-EecCCC--eEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 103 PGFVEFDDVNGKVLT-YSAQDS--IYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 103 ~~~v~Fs~pdG~~La-s~s~D~--tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
...++|| |||+.|+ +.+.++ .|.+||+.++++..... .....+++|| +|++|+.++.......|.++|+.+|+.
T Consensus 250 ~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 250 NGAPSFS-PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ccCceEC-CCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 4468998 8998776 445555 69999998887543222 2345678999 688887765333223577778888775
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEeC-C--CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-C---Ce
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQE-N--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N---RT 250 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s~-D--~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D---~t 250 (389)
.+ +..+......++|+ |++++|+..+. + ..|.+||+.+|+...... ........|+|||+.|+..+ + ..
T Consensus 329 ~~-lt~~g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~--~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 329 ER-LTFQGNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP--GSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred EE-eecCCCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCCCCeEECCC--CCCCCCceECCCCCEEEEEEecCCceE
Confidence 43 33333445578887 78888888653 2 379999999988764433 23456789999999888775 2 35
Q ss_pred EEEEeCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 251 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 251 IklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
|.+++++|...+.+..+... +...+|||
T Consensus 405 L~~~~~~g~~~~~l~~~~g~-----~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDGRVRQRLVSADGE-----VREPAWSP 432 (433)
T ss_pred EEEEECCCCceEEcccCCCC-----CCCCccCC
Confidence 77778888777777655433 46777777
No 165
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=2.1e-15 Score=154.66 Aligned_cols=207 Identities=11% Similarity=0.004 Sum_probs=147.1
Q ss_pred CCeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCC
Q 016446 122 DSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 198 (389)
Q Consensus 122 D~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~ 198 (389)
...|.+||.. |.....+ +...|.+.+|| ||++||..+....+..|.+||+.+|+.. .+..+.+.+...+|+ |++
T Consensus 181 ~~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~S-PDG 257 (435)
T PRK05137 181 IKRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFS-PDG 257 (435)
T ss_pred ceEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEEC-CCC
Confidence 4578889974 4433333 35689999999 6888988776666789999999998764 444455667788898 788
Q ss_pred CeEEEE-eCCCc--EEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC--eEEEEeCCCcEEEEeccCcCCc
Q 016446 199 EKLLVK-QENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWH 271 (389)
Q Consensus 199 ~~l~~~-s~D~t--IklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~--tIklWd~~G~~l~tl~gh~~~~ 271 (389)
..|+.. +.++. |.+||++++++.+ +..|.......+|+|||+.|+..+ ++ .|.+||++|...+.+..+...
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~- 335 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR- 335 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc-
Confidence 888764 55655 6777999888755 555666677899999999988765 33 677778875545555543322
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccc
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 351 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (389)
+....|||||++||..+.+ ..+..|.+||+.++ ....+.. .
T Consensus 336 ----~~~~~~SpdG~~ia~~~~~--------~~~~~i~~~d~~~~-~~~~lt~-~------------------------- 376 (435)
T PRK05137 336 ----YSTPVWSPRGDLIAFTKQG--------GGQFSIGVMKPDGS-GERILTS-G------------------------- 376 (435)
T ss_pred ----ccCeEECCCCCEEEEEEcC--------CCceEEEEEECCCC-ceEeccC-C-------------------------
Confidence 4678899999999987654 22357889997544 3444431 1
Q ss_pred eecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 352 IRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 352 ~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
..+.+.+|||||+.|+-.+.+
T Consensus 377 ---------~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 377 ---------FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ---------CCCCCCeECCCCCEEEEEEcc
Confidence 135568999999998776543
No 166
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.75 E-value=7.9e-17 Score=166.10 Aligned_cols=242 Identities=13% Similarity=0.151 Sum_probs=168.5
Q ss_pred CceeEEEecCC--CeEEEEecCCCeEEEEeCCCCeEE------EE--ecCCcEEEEEEcCCceEEEEecCCCCeeEEEEE
Q 016446 102 WPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTML------YS--ISDKHVQEIKISPGIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 102 ~~~~v~Fs~pd--G~~Las~s~D~tiklWdl~~g~~l------~t--l~~~~V~~vafS~g~~la~~~~~s~d~tiklWd 171 (389)
-|+++.|++.. ..+||-+.+||-|.|.|.+.-+-. +. .|-+.|.+++.-||+.++++ .+.|.|||+||
T Consensus 51 pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVs--asGDsT~r~Wd 128 (720)
T KOG0321|consen 51 PPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVS--ASGDSTIRPWD 128 (720)
T ss_pred CCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEE--ccCCceeeeee
Confidence 34567887433 468999999999999997543311 11 23468999999998877776 45679999999
Q ss_pred cCCCeEEEE--EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe-------EE--------------------E
Q 016446 172 IEDGTVLKV--FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-------LM--------------------E 222 (389)
Q Consensus 172 ~~tG~~l~t--l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~-------~~--------------------~ 222 (389)
++++++... +.||...+.+++|.+.+...+++|+.|+.|.|||++-.. |. .
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 999999987 889999999999996666777889999999999987322 11 1
Q ss_pred EcccCCCceEE---EEEcCCCcEEEEEc--CCeEEEEeCC-CcEEE------EeccCcCCcCCCCeeEEEECCCCCEEEE
Q 016446 223 VSRTEFMTPSA---FIFLYENQLFLTFR--NRTVAVWNFR-GELVT------SFEDHLLWHPDCNTNNIYITSDQDLIIS 290 (389)
Q Consensus 223 ~l~gh~~~v~s---v~fspdg~~laS~s--D~tIklWd~~-G~~l~------tl~gh~~~~~~~~v~sv~fSpdG~~laS 290 (389)
....|...+.+ +.|.-|..+|||++ |++||+||+. ..+.. ...-|..--+--.+.++....-|.||..
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A 288 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA 288 (720)
T ss_pred ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence 11234555666 66777788888886 9999999985 33322 1111211000001345555666899988
Q ss_pred EecCCCcccccCCCCCeEEEEeCCCC--eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEE
Q 016446 291 YCKAEPEDQWMEGSAGSINVSSILTG--KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY 368 (389)
Q Consensus 291 ~s~D~~~~~~~~s~D~tIklWd~~tg--~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svaf 368 (389)
.|.| ++|.+||+.+- ..++.+.||.. .+- .| .=..
T Consensus 289 sCtD-----------~sIy~ynm~s~s~sP~~~~sg~~~--------------------~sf-----------~v-ks~l 325 (720)
T KOG0321|consen 289 SCTD-----------NSIYFYNMRSLSISPVAEFSGKLN--------------------SSF-----------YV-KSEL 325 (720)
T ss_pred EecC-----------CcEEEEeccccCcCchhhccCccc--------------------cee-----------ee-eeec
Confidence 8876 89999998642 23444455441 111 12 1246
Q ss_pred CCCCCEEEEecCCCcEEEcc
Q 016446 369 DEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 369 Spdg~~LaSgs~D~tIrlW~ 388 (389)
||||+.|+||+.|+-+.+|.
T Consensus 326 Spd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 326 SPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred CCCCceEeccCCCcceeeee
Confidence 99999999999999999996
No 167
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=7.1e-16 Score=158.31 Aligned_cols=226 Identities=14% Similarity=0.156 Sum_probs=155.0
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec---CCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA---QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS- 150 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s---~D~tiklWdl~~g~~l~tl~-~~~V~~vafS- 150 (389)
..+.++|...+.. +.+.. ....+.+.+|| |||+.||..+ .+..|.+|++.+|+...... ...+.+++||
T Consensus 179 ~~l~~~d~dg~~~---~~lt~--~~~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP 252 (429)
T PRK03629 179 YELRVSDYDGYNQ---FVVHR--SPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 252 (429)
T ss_pred eeEEEEcCCCCCC---EEeec--CCCceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence 4666777543332 22322 22234579998 9999999765 34689999999887433222 2345679999
Q ss_pred CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeC-CCcEEEE--ECCCCeEEEEcccC
Q 016446 151 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQIL--DVRNAELMEVSRTE 227 (389)
Q Consensus 151 ~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~-D~tIklW--d~~tg~~~~~l~gh 227 (389)
||.+||..........|.+||+.+|++.+... +...+....|+ |++..|+..+. ++..+|| |+.+|+..+. ..+
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t~~ 329 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWF-PDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-TWE 329 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEEC-CCCCEEEEEeCCCCCceEEEEECCCCCeEEe-ecC
Confidence 68888876444444579999999988755443 33566788998 78888888774 4566666 7777765443 334
Q ss_pred CCceEEEEEcCCCcEEEEEc--C--CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccC
Q 016446 228 FMTPSAFIFLYENQLFLTFR--N--RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 302 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s--D--~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~ 302 (389)
.......+|||||++|+..+ + ..|.+||++ |+ .+.|.... . ..+..|||||++|+.++.+.
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt~~~-~-----~~~p~~SpDG~~i~~~s~~~------- 395 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLTDTF-L-----DETPSIAPNGTMVIYSSSQG------- 395 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeCCCC-C-----CCCceECCCCCEEEEEEcCC-------
Confidence 44566789999999998764 3 368889997 55 44555321 1 35778999999999988762
Q ss_pred CCCCeEEEEeCCCCeEEEEecCCC
Q 016446 303 GSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 303 s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
....+.++++ +|+..+.|.+|.
T Consensus 396 -~~~~l~~~~~-~G~~~~~l~~~~ 417 (429)
T PRK03629 396 -MGSVLNLVST-DGRFKARLPATD 417 (429)
T ss_pred -CceEEEEEEC-CCCCeEECccCC
Confidence 2245889996 688889999887
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=1.4e-17 Score=164.01 Aligned_cols=158 Identities=13% Similarity=0.210 Sum_probs=131.7
Q ss_pred EEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC-------eEEEEcccCCCceEEEEEcCCC-cEEEEEc-CCe
Q 016446 180 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-------ELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRT 250 (389)
Q Consensus 180 tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg-------~~~~~l~gh~~~v~sv~fspdg-~~laS~s-D~t 250 (389)
.+.||.+++..++|.|..+..||+||+|.||+||++-.+ +.+..|.||+..|--|+|.|-- +.|+|++ |.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 345899999999999666678888999999999998754 3477889999999999999954 4566666 999
Q ss_pred EEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 016446 251 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 329 (389)
Q Consensus 251 IklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~ 329 (389)
|+|||+. |+-+-+|. |.+. |+++.|+.||.+|++.|.| +.|||||..+|+.+..-.+|.++
T Consensus 156 v~iWnv~tgeali~l~-hpd~-----i~S~sfn~dGs~l~TtckD-----------KkvRv~dpr~~~~v~e~~~heG~- 217 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDM-----VYSMSFNRDGSLLCTTCKD-----------KKVRVIDPRRGTVVSEGVAHEGA- 217 (472)
T ss_pred EEEEeccCCceeeecC-CCCe-----EEEEEeccCCceeeeeccc-----------ceeEEEcCCCCcEeeecccccCC-
Confidence 9999996 99888888 8765 8999999999999999986 89999999999999999999953
Q ss_pred CcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec----CCCcEEEcc
Q 016446 330 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN----RHGLVHVWS 388 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs----~D~tIrlW~ 388 (389)
.=..+.|=.+|. |+|.+ .+..+.|||
T Consensus 218 --------------------------------k~~Raifl~~g~-i~tTGfsr~seRq~aLwd 247 (472)
T KOG0303|consen 218 --------------------------------KPARAIFLASGK-IFTTGFSRMSERQIALWD 247 (472)
T ss_pred --------------------------------CcceeEEeccCc-eeeeccccccccceeccC
Confidence 223456777888 55444 577899997
No 169
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.1e-16 Score=169.91 Aligned_cols=303 Identities=12% Similarity=0.148 Sum_probs=205.2
Q ss_pred ceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeee--cc
Q 016446 23 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE--SL 100 (389)
Q Consensus 23 gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~--~~ 100 (389)
.+|-.|+.. +.++.. ..-+.+-|+|.-..||.+ .+. -.|.+||...|++..+ |... ..
T Consensus 1050 ~~i~~W~~~------~~~~n~-~~pk~~~~hpf~p~i~~a----d~r------~~i~vwd~e~~~~l~~---F~n~~~~~ 1109 (1387)
T KOG1517|consen 1050 NPIGNWDQK------FMTGNN-QPPKTLKFHPFEPQIAAA----DDR------ERIRVWDWEKGRLLNG---FDNGAFPD 1109 (1387)
T ss_pred ccccchHHH------HHhcCC-CCCceeeecCCCceeEEc----CCc------ceEEEEecccCceecc---ccCCCCCC
Confidence 346678764 223322 345788999999988883 345 5788999988886322 2111 11
Q ss_pred cCceeEEEe-cCCCeEEEEecCCCeEEEEeC-CCC----eEEEEe---cC----CcEEEEEEc---CCceEEEEecCCCC
Q 016446 101 KWPGFVEFD-DVNGKVLTYSAQDSIYKVFDL-KNY----TMLYSI---SD----KHVQEIKIS---PGIMLLIFNRSSSH 164 (389)
Q Consensus 101 ~~~~~v~Fs-~pdG~~Las~s~D~tiklWdl-~~g----~~l~tl---~~----~~V~~vafS---~g~~la~~~~~s~d 164 (389)
..+..+.|- ..|-.+|.+|+.||.||||+- .++ +++..+ ++ ..=..+.+. ..+.|+++ ++-
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t---Gd~ 1186 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT---GDV 1186 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec---CCe
Confidence 123345553 234568889999999999973 232 233222 21 111113333 34455554 224
Q ss_pred eeEEEEEcCCCeEEEEEeec-CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe---EEEEcccCCCc--eEEEEEcC
Q 016446 165 VPLKILSIEDGTVLKVFYHL-LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFMT--PSAFIFLY 238 (389)
Q Consensus 165 ~tiklWd~~tG~~l~tl~~~-~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~---~~~~l~gh~~~--v~sv~fsp 238 (389)
..|||||++.-++++.++.- ...+.++.-..+.+..+++|-.||.||++|.+.-. .+.+.+.|++. |.-+.|-+
T Consensus 1187 r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec
Confidence 79999999998888888732 22334444443446788889999999999998644 46778899998 99999988
Q ss_pred CCcE-EEEEc-CCeEEEEeCCC-cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 239 ENQL-FLTFR-NRTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 239 dg~~-laS~s-D~tIklWd~~G-~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
.|-. |+||+ ||.|++||++. .....+.-...|..+..+.++..+++..+||||+. +.|||||+.
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~------------q~ikIy~~~- 1333 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA------------QLIKIYSLS- 1333 (1387)
T ss_pred CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc------------ceEEEEecC-
Confidence 6665 88998 99999999986 33333332222221222689999999999999864 799999965
Q ss_pred CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 316 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 316 g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
|+.+..++.+.. ..++....+.+++|+|---.||.|+.|.+|-|+.
T Consensus 1334 G~~l~~~k~n~~---------------------------F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPG---------------------------FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred hhhhcccccCcc---------------------------cccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 999988886652 1111113779999999999999999999999874
No 170
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=3.3e-17 Score=154.69 Aligned_cols=286 Identities=12% Similarity=0.092 Sum_probs=184.7
Q ss_pred ccEEEEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 4 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 4 ~~v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
+.|.++.|- ++++.++...|.+++|.++|.+.++.+.+++...|..+-.-|+++ |.+ .+.| -.+-+|+
T Consensus 15 ~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~-l~t----qgRd------~~L~lw~ 83 (323)
T KOG0322|consen 15 SSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS-LDT----QGRD------PLLILWT 83 (323)
T ss_pred chheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc-hhh----cCCC------ceEEEEE
Confidence 456777777 999999999999999999999999999977778999998888855 555 5677 5666777
Q ss_pred eccCCCCCcceeEeeecccCceeEEEec-CCCeEEEEecCCCeEEEEeCC-CCeEEEEec---CCcEEEEEEcCCceEEE
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS---DKHVQEIKISPGIMLLI 157 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~-pdG~~Las~s~D~tiklWdl~-~g~~l~tl~---~~~V~~vafS~g~~la~ 157 (389)
+.-+.......+ ...+..+..||- ++++ .+.|-+. .++-....| ...-..|.+-|.....-
T Consensus 84 ia~s~~i~i~Si----~~nslgFCrfSl~~~~k----------~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~K 149 (323)
T KOG0322|consen 84 IAYSAFISIHSI----VVNSLGFCRFSLVKKPK----------NSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSK 149 (323)
T ss_pred ccCcceEEEeee----eccccccccceeccCCC----------cchhheecCCcccchhhhhccCccceeEccCchhccc
Confidence 765543211111 112222333330 1111 1122211 111111111 11122222222111100
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCC--eEEEEeCCCcEEEEECCCCeEEE----------Ecc
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE--KLLVKQENENLQILDVRNAELME----------VSR 225 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~--~l~~~s~D~tIklWd~~tg~~~~----------~l~ 225 (389)
- +. +-|.. +.+. .+. .+++|-+++.+-+||+.++..+- -..
T Consensus 150 ---l---gs--------vmc~~-----------~~~~--c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a 202 (323)
T KOG0322|consen 150 ---L---GS--------VMCQD-----------KDHA--CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA 202 (323)
T ss_pred ---c---Cc--------eeeee-----------cccc--ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh
Confidence 0 00 01111 1111 121 34556799999999999884322 235
Q ss_pred cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC---CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 226 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~---G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
.|..+|.++.|-+--..=++++ +..+-.|.++ |.|-.. ..|... ++.|..|.+=||||++|+++.|
T Consensus 203 sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~-~e~~lk--npGv~gvrIRpD~KIlATAGWD------- 272 (323)
T KOG0322|consen 203 SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR-KEITLK--NPGVSGVRIRPDGKILATAGWD------- 272 (323)
T ss_pred hccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc-ceEEec--CCCccceEEccCCcEEeecccC-------
Confidence 6899999999987776677787 7777789884 443210 011111 1247999999999999998765
Q ss_pred CCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 302 EGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 302 ~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
+-||+++.+|.+.++.|.-|. ..|++||||||...+|.||.|
T Consensus 273 ----~RiRVyswrtl~pLAVLkyHs----------------------------------agvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 273 ----HRIRVYSWRTLNPLAVLKYHS----------------------------------AGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred ----CcEEEEEeccCCchhhhhhhh----------------------------------cceeEEEeCCCCchhhhccCC
Confidence 899999999999999999998 589999999999999999999
Q ss_pred CcEEEccC
Q 016446 382 GLVHVWSN 389 (389)
Q Consensus 382 ~tIrlW~~ 389 (389)
+.|-||+.
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999974
No 171
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.7e-17 Score=165.23 Aligned_cols=238 Identities=12% Similarity=0.154 Sum_probs=187.4
Q ss_pred ecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCC---ceEEEEecCC-----------
Q 016446 98 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPG---IMLLIFNRSS----------- 162 (389)
Q Consensus 98 ~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g---~~la~~~~~s----------- 162 (389)
+|.+-+.++.-+ |-|..|||||.|||||+|.+.||.|+++.. ...|++|+|+|+ ..||++-...
T Consensus 398 GHtg~Vr~iSvd-p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 398 GHTGLVRSISVD-PSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred ccCCeEEEEEec-CCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 466667788886 789999999999999999999999999998 789999999963 3455442221
Q ss_pred ------------------CCeeEEEEEcCC---Ce-EEEEEeecCCceeEEEEEecCCCeEEEEe---CCCcEEEEECCC
Q 016446 163 ------------------SHVPLKILSIED---GT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRN 217 (389)
Q Consensus 163 ------------------~d~tiklWd~~t---G~-~l~tl~~~~~~~~~v~f~~~~~~~l~~~s---~D~tIklWd~~t 217 (389)
.|..+-.|.-.. ++ -+...-.|...+..|.++ ..|++|++.. ....|-|.++..
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH-rkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH-RKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee-cCCceEEEeccCCCcceEEEEeccc
Confidence 122334565331 11 011222466788999998 6799999854 668899999977
Q ss_pred CeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 016446 218 AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 218 g~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~ 296 (389)
+....-|..-.+.|..+.|.|-..+|..+....|+|+|+. +++++.|.-..-| |.+++++|.|.-|+.|+.|
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw-----iS~msihp~GDnli~gs~d-- 628 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW-----ISSMSIHPNGDNLILGSYD-- 628 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee-----eeeeeecCCCCeEEEecCC--
Confidence 7666666666678999999999999999999999999996 8888887766666 7999999999999998765
Q ss_pred cccccCCCCCeEEEEeCCC-CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEE
Q 016446 297 EDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 375 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~L 375 (389)
+.+-.+|+.- -+..++|+-|. ..|++|+|++-=..+
T Consensus 629 ---------~k~~WfDldlsskPyk~lr~H~----------------------------------~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 629 ---------KKMCWFDLDLSSKPYKTLRLHE----------------------------------KAVRSVAFHKRYPLF 665 (733)
T ss_pred ---------CeeEEEEcccCcchhHHhhhhh----------------------------------hhhhhhhhcccccee
Confidence 7887778753 46778888888 689999999999999
Q ss_pred EEecCCCcEEEc
Q 016446 376 YTGNRHGLVHVW 387 (389)
Q Consensus 376 aSgs~D~tIrlW 387 (389)
+|||.||+|.+.
T Consensus 666 as~sdDgtv~Vf 677 (733)
T KOG0650|consen 666 ASGSDDGTVIVF 677 (733)
T ss_pred eeecCCCcEEEE
Confidence 999999999875
No 172
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=7.2e-17 Score=158.28 Aligned_cols=185 Identities=14% Similarity=0.191 Sum_probs=146.9
Q ss_pred CCCeEEEEecCCCeEEEEeCCC----------------CeEEEEecC--CcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKN----------------YTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~----------------g~~l~tl~~--~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
++..+.|+=+..|.|+|||+.. -++++++.+ ..=.++.||| -+.|+++ ..-+.|+||
T Consensus 163 ~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG---Dc~~~I~lw 239 (440)
T KOG0302|consen 163 GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG---DCVKGIHLW 239 (440)
T ss_pred CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC---ccccceEee
Confidence 3667888889999999999742 124555543 4567899997 4445443 233689999
Q ss_pred EcCCCeEE---EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC---eEEEEcccCCCceEEEEEcCCCcEEE
Q 016446 171 SIEDGTVL---KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 171 d~~tG~~l---~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg---~~~~~l~gh~~~v~sv~fspdg~~la 244 (389)
...+|.=. ..|.+|...|..++++|.....++++|-|++|||||++.+ -|+-+ +.|..-|+.|.|+.+-.+||
T Consensus 240 ~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLa 318 (440)
T KOG0302|consen 240 EPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLA 318 (440)
T ss_pred eeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceee
Confidence 99988744 4677899999999999666678888999999999999998 56666 89999999999999888999
Q ss_pred EEc-CCeEEEEeC---C-CcEEEEeccCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 245 TFR-NRTVAVWNF---R-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 245 S~s-D~tIklWd~---~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
||+ ||+++|||+ . |+.+.+|+-|..+ |.+|.|+|... .||.++ .|..|-|||+..
T Consensus 319 sG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p-----ItsieW~p~e~s~iaasg-----------~D~QitiWDlsv 379 (440)
T KOG0302|consen 319 SGGDDGTLSIWDLRQFKSGQPVATFKYHKAP-----ITSIEWHPHEDSVIAASG-----------EDNQITIWDLSV 379 (440)
T ss_pred ecCCCceEEEEEhhhccCCCcceeEEeccCC-----eeEEEeccccCceEEecc-----------CCCcEEEEEeec
Confidence 999 999999997 3 7889999999998 79999999433 333332 368999999864
No 173
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=6.7e-16 Score=148.84 Aligned_cols=272 Identities=13% Similarity=0.109 Sum_probs=197.0
Q ss_pred EEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec
Q 016446 7 IEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 84 (389)
Q Consensus 7 ~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~ 84 (389)
.++.|+ |.+||+++.||.+-+||+.|-..-+.|.+| ..+|.|+.|||||..|.++ +.| |.+.+||+.
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH-~~pi~sl~WS~dgr~Llts----S~D------~si~lwDl~ 95 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH-VRPITSLCWSRDGRKLLTS----SRD------WSIKLWDLL 95 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc-ccceeEEEecCCCCEeeee----cCC------ceeEEEecc
Confidence 467888 999999999999999999987777777776 5999999999999999995 477 999999999
Q ss_pred cCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec---C---CcEEE-EEEc-CCceEE
Q 016446 85 RGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---D---KHVQE-IKIS-PGIMLL 156 (389)
Q Consensus 85 ~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~---~---~~V~~-vafS-~g~~la 156 (389)
.|.+++... | -..++++.|.|.+-+..+..--+..-.+=++.+++. ..|+ . +.+.+ ..|. -|.++.
T Consensus 96 ~gs~l~rir-f----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 96 KGSPLKRIR-F----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred CCCceeEEE-c----cCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEE
Confidence 998743322 2 123456788743333333233343344445444321 1111 1 22322 3455 499998
Q ss_pred EEecCCCCeeEEEEEcCCCeEEEEEeecC-CceeEEEEEecCCCeEEEEeCCCcEEEEECCC-------CeEE--EEccc
Q 016446 157 IFNRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRN-------AELM--EVSRT 226 (389)
Q Consensus 157 ~~~~~s~d~tiklWd~~tG~~l~tl~~~~-~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-------g~~~--~~l~g 226 (389)
++.+. +.+-+.|.+|-+|+..++--. ..++.+.|+ .-+..+++-..|.+||.++++. |++. +.+..
T Consensus 170 tGtsK---Gkllv~~a~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 170 TGTSK---GKLLVYDAETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred EecCc---ceEEEEecchheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 87544 789999999999999998554 778899997 5688999999999999999872 1211 11100
Q ss_pred --CCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 227 --EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 227 --h~~~v~sv~fspdg~~laS~s--D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
..-+=..+.||.||.++..++ -..+-||... |.|++.|.|..+-. ...|.+.|=--.|+|-.
T Consensus 246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~----l~DV~whp~rp~i~si~--------- 312 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEE----LLDVNWHPVRPIIASIA--------- 312 (405)
T ss_pred HHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhh----eeecccccceeeeeecc---------
Confidence 011224688999999999886 7799999997 99999999877532 57888999888888863
Q ss_pred CCCCCeEEEEeCCC
Q 016446 302 EGSAGSINVSSILT 315 (389)
Q Consensus 302 ~s~D~tIklWd~~t 315 (389)
.|+|+||...+
T Consensus 313 ---sg~v~iw~~~~ 323 (405)
T KOG1273|consen 313 ---SGVVYIWAVVQ 323 (405)
T ss_pred ---CCceEEEEeec
Confidence 28999998653
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=3.1e-16 Score=149.72 Aligned_cols=269 Identities=14% Similarity=0.111 Sum_probs=191.8
Q ss_pred EecCceEEEEec--ccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCccee-eeeeeEeEeccCCCC-Cccee
Q 016446 19 LAHSGVCAAFSR--ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK-CRSTKIEYIRRGKPD-SGFAL 94 (389)
Q Consensus 19 ~~~~gtiklW~~--~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~-~~~~~l~~i~~g~~~-~~~~l 94 (389)
+-++..|.|-.+ +.++.++..=.|+.+.||.++-+|..+.|.+... .+++..+ +..+.||.++...-- ...+|
T Consensus 36 lK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~y---n~~s~s~vl~~aaiw~ipe~~~~S~~~tl 112 (370)
T KOG1007|consen 36 LKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVY---NDTSDSGVLTGAAIWQIPEPLGQSNSSTL 112 (370)
T ss_pred cCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEE---eccCCCcceeeEEEEecccccCccccchh
Confidence 345666666544 4466777777788899999999999886554322 2233232 255668988533210 11111
Q ss_pred -----EeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE-EEEec-------CCcEEEEEEcC---CceEEEE
Q 016446 95 -----FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS-------DKHVQEIKISP---GIMLLIF 158 (389)
Q Consensus 95 -----~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~-l~tl~-------~~~V~~vafS~---g~~la~~ 158 (389)
...+..+-+..|.|- ||+..||+-. |..|-||++..+.. ...+. .....+=++|| |.++|++
T Consensus 113 E~v~~Ldteavg~i~cvew~-Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWE-PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred hHhhcCCHHHhCceeeEEEc-CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 112455566789996 8999999875 89999999988776 34442 24567778885 8888876
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCCC-eEEEEeCCCcEEEEECC-CCeEEEEcccCCCceEEEE
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFI 235 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~-~l~~~s~D~tIklWd~~-tg~~~~~l~gh~~~v~sv~ 235 (389)
+ |.|++-||++|-.+...++ .|.+.++.+.|+| .-+ .|++++.|+-|||||.+ +..+++.+.+|..+||+|.
T Consensus 191 ~----d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp-nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 191 S----DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP-NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred C----CCcEEEEEccchhhhcchhhhhcceeeeccCCC-CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 3 4699999999988888887 7888999999984 444 45557799999999988 4678999999999999999
Q ss_pred EcCC-CcEEEEEc-CCeEEEEeCC------------------------------CcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 236 FLYE-NQLFLTFR-NRTVAVWNFR------------------------------GELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 236 fspd-g~~laS~s-D~tIklWd~~------------------------------G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
|+|. .|+++|++ |..|-||... ..++.+++.|.+. |+.+++|.
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS-----VY~~aWSs 340 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS-----VYALAWSS 340 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc-----eEEEeecc
Confidence 9984 57788887 9999999621 1134577788876 79999987
Q ss_pred CCC-EEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 284 DQD-LIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 284 dG~-~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
--- +.||=| -||-+-|=.+
T Consensus 341 adPWiFASLS-----------YDGRviIs~V 360 (370)
T KOG1007|consen 341 ADPWIFASLS-----------YDGRVIISSV 360 (370)
T ss_pred CCCeeEEEec-----------cCceEEeecC
Confidence 444 445543 4577766544
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=2.7e-16 Score=161.97 Aligned_cols=109 Identities=9% Similarity=0.177 Sum_probs=92.9
Q ss_pred ceEEEEEcC-CCcEEEEEc-CCeEEEEeCC-Cc-------EEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcc
Q 016446 230 TPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GE-------LVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPED 298 (389)
Q Consensus 230 ~v~sv~fsp-dg~~laS~s-D~tIklWd~~-G~-------~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~ 298 (389)
.|..+.|.| |-+.||.+. ||.|+||.+. +. .-..|++|... |.++.|+| -...||+++.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK-----I~slRfHPLAadvLa~asy----- 698 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK-----ITSLRFHPLAADVLAVASY----- 698 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce-----EEEEEecchhhhHhhhhhc-----
Confidence 577777776 677888888 9999999985 32 23567888876 79999999 4567787765
Q ss_pred cccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEe
Q 016446 299 QWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 378 (389)
Q Consensus 299 ~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSg 378 (389)
|-||+|||+.+++.--.|.||+ +.|.++||||||+.+||-
T Consensus 699 ------d~Ti~lWDl~~~~~~~~l~gHt----------------------------------dqIf~~AWSpdGr~~AtV 738 (1012)
T KOG1445|consen 699 ------DSTIELWDLANAKLYSRLVGHT----------------------------------DQIFGIAWSPDGRRIATV 738 (1012)
T ss_pred ------cceeeeeehhhhhhhheeccCc----------------------------------CceeEEEECCCCcceeee
Confidence 4899999999999999999999 599999999999999999
Q ss_pred cCCCcEEEcc
Q 016446 379 NRHGLVHVWS 388 (389)
Q Consensus 379 s~D~tIrlW~ 388 (389)
..||+||+++
T Consensus 739 cKDg~~rVy~ 748 (1012)
T KOG1445|consen 739 CKDGTLRVYE 748 (1012)
T ss_pred ecCceEEEeC
Confidence 9999999985
No 176
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=3.7e-15 Score=152.88 Aligned_cols=234 Identities=8% Similarity=0.043 Sum_probs=160.2
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 103 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~ 103 (389)
.|.+||.+ |...+.+..+. ..+.+.+|||||+.|+.++... .+ .++.+|++..|+. ..+. ...+.+
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~-~~v~~p~wSpDG~~lay~s~~~-g~------~~i~~~dl~~g~~---~~l~--~~~g~~ 248 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGS-SLVLTPRFSPNRQEITYMSYAN-GR------PRVYLLDLETGQR---ELVG--NFPGMT 248 (435)
T ss_pred EEEEECCC-CCCcEEEecCC-CCeEeeEECCCCCEEEEEEecC-CC------CEEEEEECCCCcE---EEee--cCCCcc
Confidence 77888885 78778888764 7999999999999999976432 34 6889999988864 2232 122344
Q ss_pred eeEEEecCCCeEEE-EecCCCe--EEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 104 GFVEFDDVNGKVLT-YSAQDSI--YKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 104 ~~v~Fs~pdG~~La-s~s~D~t--iklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
...+|| |||+.|+ +.+.++. |.+||+.++++.. +. .....+.+|| ||..|+..+..+....|.++|+.+|+.
T Consensus 249 ~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 249 FAPRFS-PDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred cCcEEC-CCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 568998 8998776 5555655 6677988877543 43 3346779999 688888776444456789999877654
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEeCC---CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-C-----
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N----- 248 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D---~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D----- 248 (389)
+.+..+.+......|+ |+++.|+..+.+ ..|.+||+.+++.. .+.. ...+...+|+|||+.|+..+ +
T Consensus 327 -~~lt~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 327 -RRISFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred -EEeecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEEccCCCCC
Confidence 4454344556677887 788888886532 47888998766543 3322 23577889999999988664 2
Q ss_pred -CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 249 -RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 249 -~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
..+.+.|++|...+.+.. ... +...+|||
T Consensus 403 ~~~L~~~dl~g~~~~~l~~-~~~-----~~~p~Wsp 432 (435)
T PRK05137 403 APKLYTVDLTGRNEREVPT-PGD-----ASDPAWSP 432 (435)
T ss_pred cceEEEEECCCCceEEccC-CCC-----ccCcccCC
Confidence 245666777655555542 211 45666666
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1e-16 Score=163.47 Aligned_cols=238 Identities=14% Similarity=0.141 Sum_probs=175.5
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeC---C-----CCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEE
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDL---K-----NYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl---~-----~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tikl 169 (389)
.-+...+|. |-.-.|++|+.|++++||+| . .-+++++|. ...|.+|+++ .++.+.++ +-|++|+.
T Consensus 295 d~ir~l~~~-~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg---g~Dg~I~~ 370 (577)
T KOG0642|consen 295 DCIRALAFH-PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG---GIDGTIRC 370 (577)
T ss_pred hhhhhhhcC-CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee---ccCceeee
Confidence 335568895 66778999999999999999 2 123677875 4689999999 68888775 56689999
Q ss_pred EEcCC------C----eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc--CCCceEEEEEc
Q 016446 170 LSIED------G----TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAFIFL 237 (389)
Q Consensus 170 Wd~~t------G----~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g--h~~~v~sv~fs 237 (389)
|++.- . .+..+|.||++.+|.++++ +..++|++.+.|+|+|+|+.....+ .++.. ......+|.|-
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s-~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS-STKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeec-ccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeec
Confidence 95441 1 2456788999999999998 5578899999999999999976665 33322 22355566663
Q ss_pred CC--CcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCc--CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 238 YE--NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWH--PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 238 pd--g~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~--~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
.- ...++++.-+---+.++. +.-++.++....+. ..+.++-|.-.|.+.+..++-. |++||+.|
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-----------d~~Ir~~d 517 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-----------DRSIRFFD 517 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-----------CCceeccc
Confidence 22 223333333322355555 55555555332211 1123677888888888888654 69999999
Q ss_pred CCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 313 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 313 ~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..+|+.++....|- ..|+++|+.|+|-+|++|+.|+.|+||.+
T Consensus 518 n~~~~~l~s~~a~~----------------------------------~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 518 NKTGKILHSMVAHK----------------------------------DSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccccccchheeecc----------------------------------ceecceeecCCCceEEeecCCceeehhhc
Confidence 99999999999997 58999999999999999999999999975
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=4e-16 Score=148.93 Aligned_cols=237 Identities=13% Similarity=0.152 Sum_probs=171.3
Q ss_pred ccEEEEEee--ccEEEEEecC--------ceEEEEeccc---------ceeeeeeecCCcceEEEEEEeeCCCEEEEEEE
Q 016446 4 TKVIEIVAA--RDIVFALAHS--------GVCAAFSRET---------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSV 64 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~--------gtiklW~~~t---------g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~ 64 (389)
..|+.|..+ .+.|++.+++ --+.||.+.. -++++.|...+-..|.+|-|.|++++||+.
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm-- 141 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM-- 141 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe--
Confidence 456667666 5666666655 3467898752 235556663333679999999999999984
Q ss_pred eecCCCcceeeeeeeEeEeccCCCCCcceeEeee---cccCceeEEEec-CCCeEEEEecCCCeEEEEeCCCCeEEEEec
Q 016446 65 YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE---SLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 140 (389)
Q Consensus 65 ~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~---~~~~~~~v~Fs~-pdG~~Las~s~D~tiklWdl~~g~~l~tl~ 140 (389)
+| ..|-+|++..+.... ..+-..+ +.-+..+-++|| -||..+|+. .|+|++.||+.+-++...+.
T Consensus 142 ---~d------n~i~l~~l~ess~~v-aev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~ 210 (370)
T KOG1007|consen 142 ---DD------NNIVLWSLDESSKIV-AEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE 210 (370)
T ss_pred ---cc------CceEEEEcccCcchh-eeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh
Confidence 45 788899987766421 1111111 111222457773 478888865 58999999999888776664
Q ss_pred ---CCcEEEEEEcCCc--eEEEEecCCCCeeEEEEEcC-CCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEE
Q 016446 141 ---DKHVQEIKISPGI--MLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 214 (389)
Q Consensus 141 ---~~~V~~vafS~g~--~la~~~~~s~d~tiklWd~~-tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd 214 (389)
+..|+++.|+|+. +||+ +++|+.|||||.+ +-..+++|.+|.|.+|.|.|++..++.|++++.|..|.||.
T Consensus 211 dAHgq~vrdlDfNpnkq~~lvt---~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 211 DAHGQRVRDLDFNPNKQHILVT---CGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred hhhcceeeeccCCCCceEEEEE---cCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 5689999999733 4544 4778999999987 45688999999999999999977788999999999999997
Q ss_pred CCCCe-----------------------------EEEEcccCCCceEEEEEcC-CCcEEEEEc-CCeEEEEeC
Q 016446 215 VRNAE-----------------------------LMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 215 ~~tg~-----------------------------~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd~ 256 (389)
..+-. .++++..|.+.|++++||. |==+|||-| ||.+-|=.+
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 65321 2457788999999999975 555677778 887765444
No 179
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.2e-17 Score=176.04 Aligned_cols=230 Identities=13% Similarity=0.124 Sum_probs=176.3
Q ss_pred eEEEecCCCeE----EEEecCCCeEEEEeCCC---Ce---EEEEe--cCCcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 105 FVEFDDVNGKV----LTYSAQDSIYKVFDLKN---YT---MLYSI--SDKHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 105 ~v~Fs~pdG~~----Las~s~D~tiklWdl~~---g~---~l~tl--~~~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
.+++. +.|.. ||.|..||+|-|||... +. .+.+. |.+.|+.+.|++ +..||++ ++|+.|-||
T Consensus 69 kL~W~-~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG---a~~geI~iW 144 (1049)
T KOG0307|consen 69 KLAWG-SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG---ADDGEILIW 144 (1049)
T ss_pred eeeec-ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc---CCCCcEEEe
Confidence 36776 55554 99999999999999754 33 23333 357899999994 5588765 456899999
Q ss_pred EcCCCeEEEEEe--ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC--ceEEEEEcCCCc-EEEE
Q 016446 171 SIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM--TPSAFIFLYENQ-LFLT 245 (389)
Q Consensus 171 d~~tG~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~--~v~sv~fspdg~-~laS 245 (389)
|+..=+.-.++. .....|..++|+......|++++.++++-|||++..+.+--+..|.. .+..++|+|+.- .|+.
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 998644333332 12355788888755455677788999999999998876555555543 578999999764 3334
Q ss_pred Ec--C--CeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 246 FR--N--RTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 246 ~s--D--~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
++ | -.|++||++ -.-+++|++|+.. |.++.+.|.+ .+|+|++.| +.|-+||.+||+.
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~G-----ilslsWc~~D~~lllSsgkD-----------~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRG-----ILSLSWCPQDPRLLLSSGKD-----------NRIICWNPNTGEV 288 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccc-----eeeeccCCCCchhhhcccCC-----------CCeeEecCCCceE
Confidence 43 4 499999996 5689999999976 7999999976 899987664 8999999999999
Q ss_pred EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC-EEEEecCCCcEEEcc
Q 016446 319 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWS 388 (389)
Q Consensus 319 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~-~LaSgs~D~tIrlW~ 388 (389)
+..|.... +|+..|.|.|.-- .++.+|.||+|-|..
T Consensus 289 l~~~p~~~----------------------------------nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 289 LGELPAQG----------------------------------NWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred eeecCCCC----------------------------------cceeeeeecCCCcchhhhheeccceeeee
Confidence 99998744 6999999999887 889999999998864
No 180
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=1.4e-15 Score=147.22 Aligned_cols=265 Identities=10% Similarity=0.096 Sum_probs=181.8
Q ss_pred cEEEEEecCceEEEEecc-cc--eeeeeeecC-CcceEEEEEEeeCCC----EEEEEEEeecCCCcceeeeeeeEeEecc
Q 016446 14 DIVFALAHSGVCAAFSRE-TN--RRICFLNVS-PDEVIRSLFYNKNND----SLITVSVYASDNFSSLKCRSTKIEYIRR 85 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~-tg--~~l~tl~~~-~~~~v~sv~~spdg~----~l~s~s~~~~~d~~~l~~~~~~l~~i~~ 85 (389)
|.+|++ -..++-+++.. .| +.|++.--. +.+....++++-|-+ .||. ++.. ..|++-|+..
T Consensus 56 ~vfatv-G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~----~G~~------GvIrVid~~~ 124 (385)
T KOG1034|consen 56 QVFATV-GGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA----GGYL------GVIRVIDVVS 124 (385)
T ss_pred ceEEEe-CCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe----ecce------eEEEEEecch
Confidence 444444 45567788853 23 333332222 456788888887744 3555 4455 8899999999
Q ss_pred CCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-----CCcEEEEEEc-CCceEEEEe
Q 016446 86 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DKHVQEIKIS-PGIMLLIFN 159 (389)
Q Consensus 86 g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-----~~~V~~vafS-~g~~la~~~ 159 (389)
+++.. .+- .+-..|..+.|.|.+-|+|+|+|.|.+|||||+.+..|+..+- .++|.+|.|| +|.+||+
T Consensus 125 ~~~~~--~~~--ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~S-- 198 (385)
T KOG1034|consen 125 GQCSK--NYR--GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIAS-- 198 (385)
T ss_pred hhhcc--cee--ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeec--
Confidence 88732 233 2444566799985556899999999999999999999998774 4689999999 8999986
Q ss_pred cCCCCeeEEEEEcCCCeEEEEE----------------------------eecCCceeEEEEEecCCCeEEEEeCCCcEE
Q 016446 160 RSSSHVPLKILSIEDGTVLKVF----------------------------YHLLHRNKKVDFIEQFNEKLLVKQENENLQ 211 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl----------------------------~~~~~~~~~v~f~~~~~~~l~~~s~D~tIk 211 (389)
++.|+++|||++..-+.-..+ .-|...|..|.| .++.+++.|-++.|.
T Consensus 199 -cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw---~gd~ilSkscenaI~ 274 (385)
T KOG1034|consen 199 -CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW---FGDFILSKSCENAIV 274 (385)
T ss_pred -cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH---HhhheeecccCceEE
Confidence 488899999999842211111 012222333333 367899999889999
Q ss_pred EEEC-CCCeE-------------EEEcccCCCceEE--EEEcCCCcEEEEEc-CCeEEEEeCC-Cc--EEEEeccCcCCc
Q 016446 212 ILDV-RNAEL-------------MEVSRTEFMTPSA--FIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWH 271 (389)
Q Consensus 212 lWd~-~tg~~-------------~~~l~gh~~~v~s--v~fspdg~~laS~s-D~tIklWd~~-G~--~l~tl~gh~~~~ 271 (389)
.|-. +-++- +..++-..-.+|- ++|.|=++.||-|. -|+|-+||++ -+ ...||..+...
T Consensus 275 ~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~- 353 (385)
T KOG1034|consen 275 CWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG- 353 (385)
T ss_pred EEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecccc-
Confidence 9977 22221 1112222223444 56678899999998 9999999996 33 34455544432
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
..|...+||.||.+|+-.+.| ++|-=||.
T Consensus 354 --~tVRQ~sfS~dgs~lv~vcdd-----------~~Vwrwdr 382 (385)
T KOG1034|consen 354 --STVRQTSFSRDGSILVLVCDD-----------GTVWRWDR 382 (385)
T ss_pred --ceeeeeeecccCcEEEEEeCC-----------CcEEEEEe
Confidence 358999999999999998865 89999984
No 181
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=2.7e-17 Score=173.31 Aligned_cols=228 Identities=15% Similarity=0.188 Sum_probs=175.6
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
|+..|+.+.|+ ..|.++.+|+.|..||||..+++.|+.++.+ ..|..+|.+ .+.++|++ |.|.-||+|.+.+|
T Consensus 189 H~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaa---S~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 189 HRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAA---SNDKVIRVWRLPDG 264 (1113)
T ss_pred hhhheeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhc---ccCceEEEEecCCC
Confidence 66667889998 8999999999999999999999999999875 579999999 67777654 67899999999999
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE--------------------------------
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-------------------------------- 223 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~-------------------------------- 223 (389)
..+..|.+|++.|.+++|+|. .+++.|+|+++||.+ -+.+..
T Consensus 265 ~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred chHHHHhccccceeeeccCcc-----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 999999999999999999952 277899999999987 111110
Q ss_pred ---------cccCCCceEEEEEcCCC-cEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 224 ---------SRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 224 ---------l~gh~~~v~sv~fspdg-~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
+..|...+.-+.++.|- .+.+++. +--+++|++- |.++..+.+|... +.-+.|+|=..+++..
T Consensus 339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~-----~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE-----VYVLDVHPFNPRIAMS 413 (1113)
T ss_pred ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc-----eeeeeecCCCcHhhhh
Confidence 11122222222222221 3444554 6778899995 9999999999987 6888999966655542
Q ss_pred ecCCCcccccCCCCCeEEEEeCCCCeEEEEe-cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECC
Q 016446 292 CKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE 370 (389)
Q Consensus 292 s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp 370 (389)
++.||.+-|||+-.|..++.. .||. .+..-+||+
T Consensus 414 ----------ag~dgst~iwdi~eg~pik~y~~gh~-----------------------------------kl~d~kFSq 448 (1113)
T KOG0644|consen 414 ----------AGYDGSTIIWDIWEGIPIKHYFIGHG-----------------------------------KLVDGKFSQ 448 (1113)
T ss_pred ----------ccCCCceEeeecccCCcceeeecccc-----------------------------------eeeccccCC
Confidence 356799999999999887664 4554 566779999
Q ss_pred CCCEEEEecCCCcEEE
Q 016446 371 ERNEIYTGNRHGLVHV 386 (389)
Q Consensus 371 dg~~LaSgs~D~tIrl 386 (389)
||+.++.....|.+.|
T Consensus 449 dgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 449 DGTSIALSDDHGQLYI 464 (1113)
T ss_pred CCceEecCCCCCceEE
Confidence 9999998888777655
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=2.4e-15 Score=155.72 Aligned_cols=269 Identities=10% Similarity=0.111 Sum_probs=202.9
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
-|.+|.|. |--++.++ +..+-++|...|..+++|.+|. +.|++||||.||+..|| |+.| +.+-+|.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHK-DtVycVAys~dGkrFAS----G~aD------K~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHK-DTVYCVAYAKDGKRFAS----GSAD------KSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccccccccc-ceEEEEEEccCCceecc----CCCc------eeEEEec
Confidence 46788888 43333333 3456699998899999999985 99999999999999999 6677 6777777
Q ss_pred eccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecC
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRS 161 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~ 161 (389)
-+.--. |- -.|...+....|. |=.+.|||+|-. ..-+|..+.-....--....|.++++. ||++||.+-
T Consensus 82 ~klEG~-----Lk-YSH~D~IQCMsFN-P~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~-- 151 (1081)
T KOG1538|consen 82 SKLEGI-----LK-YSHNDAIQCMSFN-PITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGM-- 151 (1081)
T ss_pred ccccce-----ee-eccCCeeeEeecC-chHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEec--
Confidence 422111 11 1233345568997 778899999864 456898643222111124678999999 999999874
Q ss_pred CCCeeEEEEEcCCCeEEEEEe---ecCCceeEEEEEecCC----CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEE
Q 016446 162 SSHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFN----EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 234 (389)
Q Consensus 162 s~d~tiklWd~~tG~~l~tl~---~~~~~~~~v~f~~~~~----~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv 234 (389)
.++||.|-+ .+|+.--.+. |...++++|+|+|..+ +.++..-+..|+-.+.+ +|+.+..-+.-...+-.+
T Consensus 152 -~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~Ci 228 (1081)
T KOG1538|consen 152 -FNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCI 228 (1081)
T ss_pred -cCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhh
Confidence 447998888 6777766665 3556789999985433 57777889999999988 566655434445566778
Q ss_pred EEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 235 IFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 235 ~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
.+-|+|++++-|+ |+.++++..+|-++-|+.....| ||+|+..|+||+.+.||.| |||--+++
T Consensus 229 sYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~W-----IWtV~~~PNsQ~v~~GCqD-----------GTiACyNl 292 (1081)
T KOG1538|consen 229 SYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSW-----IWTVQAKPNSQYVVVGCQD-----------GTIACYNL 292 (1081)
T ss_pred eeccCCcEEEEccCCCceEEEeecCeEEeecccccee-----EEEEEEccCCceEEEEEcc-----------Ceeehhhh
Confidence 8899999999987 99999999999999999887778 8999999999999999986 89888876
Q ss_pred C
Q 016446 314 L 314 (389)
Q Consensus 314 ~ 314 (389)
.
T Consensus 293 ~ 293 (1081)
T KOG1538|consen 293 I 293 (1081)
T ss_pred H
Confidence 4
No 183
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.1e-16 Score=173.57 Aligned_cols=231 Identities=10% Similarity=0.108 Sum_probs=186.7
Q ss_pred EEEEEecCceEEEEeccc---c---eeeeeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEeEeccCC
Q 016446 15 IVFALAHSGVCAAFSRET---N---RRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGK 87 (389)
Q Consensus 15 ~~a~~~~~gtiklW~~~t---g---~~l~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~ 87 (389)
+||.+.+||.|-||+... + ..|.+.+.|+ ..|+.+-|||+.. .||| |.+| ..|.|||+..-+
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~-G~V~gLDfN~~q~nlLAS----Ga~~------geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT-GPVLGLDFNPFQGNLLAS----GADD------GEILIWDLNKPE 150 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccC-CceeeeeccccCCceeec----cCCC------CcEEEeccCCcC
Confidence 599999999999999653 2 3677888876 8999999999955 8988 7788 899999986533
Q ss_pred CCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--C--CcEEEEEEcC--CceEEEEecC
Q 016446 88 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D--KHVQEIKISP--GIMLLIFNRS 161 (389)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~--~~V~~vafS~--g~~la~~~~~ 161 (389)
.=+.- . .+.....|..|++......+|||++.++.+-+||+..-+++..+. . ..+..|+++| -.+|++++.+
T Consensus 151 tP~~~-~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d 228 (1049)
T KOG0307|consen 151 TPFTP-G-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD 228 (1049)
T ss_pred CCCCC-C-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCC
Confidence 21110 0 112333456688865556789999999999999998878776665 2 3578899995 4466677667
Q ss_pred CCCeeEEEEEcCC-CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC
Q 016446 162 SSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240 (389)
Q Consensus 162 s~d~tiklWd~~t-G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg 240 (389)
...-.|++||++. -..+++|++|...+.++.+...|+..+++++.|+.|-+||.+|||.+-.+....+|+..|.|.|..
T Consensus 229 d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~ 308 (1049)
T KOG0307|consen 229 DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRN 308 (1049)
T ss_pred CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCC
Confidence 6778999999763 357889999999999999997777888889999999999999999999999999999999999987
Q ss_pred c-EEEEEc-CCeEEEEeCCC
Q 016446 241 Q-LFLTFR-NRTVAVWNFRG 258 (389)
Q Consensus 241 ~-~laS~s-D~tIklWd~~G 258 (389)
- ++|.++ ||.|.|+.++|
T Consensus 309 P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 309 PSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cchhhhheeccceeeeeeec
Confidence 7 777778 99999999974
No 184
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=5.8e-15 Score=151.37 Aligned_cols=207 Identities=14% Similarity=0.097 Sum_probs=142.8
Q ss_pred CeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCC
Q 016446 123 SIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 199 (389)
Q Consensus 123 ~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~ 199 (389)
..|.+||. +|.....+ +...|.+.+|| +|+.||..+..+....|.+||+.+|+... +....+.....+|+ ||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~S-PDG~ 252 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWS-PDGR 252 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCC
Confidence 46667776 55544444 35679999999 68889887655555679999999998654 33233556788998 7888
Q ss_pred eEEE-EeCCCcEEEEE--CCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CCeEEEEeC--CCcEEEEeccCcCCcC
Q 016446 200 KLLV-KQENENLQILD--VRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHP 272 (389)
Q Consensus 200 ~l~~-~s~D~tIklWd--~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~tIklWd~--~G~~l~tl~gh~~~~~ 272 (389)
+|+. .+.|+..+||. +.+++ ++.+..|.....+.+|+|||+.|+..+ ++..+||.+ .+...+.+..+...
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~-- 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY-- 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC--
Confidence 8876 56788877775 55555 455566666677889999999888665 577888875 43333323222221
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccce
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 352 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
..+.+|||||++||..+.+ +.+..|.+||+.+|+.. .+..+.
T Consensus 330 ---~~~~~~SpDG~~Ia~~s~~--------~g~~~I~v~d~~~g~~~-~lt~~~-------------------------- 371 (427)
T PRK02889 330 ---NTSPRISPDGKLLAYISRV--------GGAFKLYVQDLATGQVT-ALTDTT-------------------------- 371 (427)
T ss_pred ---cCceEECCCCCEEEEEEcc--------CCcEEEEEEECCCCCeE-EccCCC--------------------------
Confidence 2467899999999987654 12347999999988754 443221
Q ss_pred ecccccccCCEEEEEECCCCCEEEEecCCC
Q 016446 353 RSTVGEALEDITSLFYDEERNEIYTGNRHG 382 (389)
Q Consensus 353 ~~~~~~~~~~V~svafSpdg~~LaSgs~D~ 382 (389)
...+..|||||+.|+.++.++
T Consensus 372 ---------~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 372 ---------RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ---------CccCceECCCCCEEEEEEecC
Confidence 235679999999998888654
No 185
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.5e-14 Score=148.23 Aligned_cols=247 Identities=12% Similarity=0.048 Sum_probs=162.0
Q ss_pred EeeccEEEEEecCc--eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCC
Q 016446 10 VAARDIVFALAHSG--VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 87 (389)
Q Consensus 10 ~~~~~~~a~~~~~g--tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~ 87 (389)
.|++.+..+....+ .+.++|. .|+..+.+..+. +.+.+.+|||||+.|+.++.. ... .++.+|++..|+
T Consensus 161 ~f~~~iayv~~~~~~~~L~~~D~-dG~~~~~l~~~~-~~v~~p~wSPDG~~la~~s~~-~~~------~~I~~~dl~~g~ 231 (427)
T PRK02889 161 VFSTRIAYVIKTGNRYQLQISDA-DGQNAQSALSSP-EPIISPAWSPDGTKLAYVSFE-SKK------PVVYVHDLATGR 231 (427)
T ss_pred ccccEEEEEEccCCccEEEEECC-CCCCceEeccCC-CCcccceEcCCCCEEEEEEcc-CCC------cEEEEEECCCCC
Confidence 45566555554444 4555666 387777777664 789999999999999987643 223 568899998887
Q ss_pred CCCcceeEeeecccCceeEEEecCCCeEEE-EecCCCeEEEEeC--CCCeEEEEec--CCcEEEEEEc-CCceEEEEecC
Q 016446 88 PDSGFALFESESLKWPGFVEFDDVNGKVLT-YSAQDSIYKVFDL--KNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRS 161 (389)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~v~Fs~pdG~~La-s~s~D~tiklWdl--~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~ 161 (389)
. ..+. ...+.....+|| |||+.|| +.+.|+..+||.+ .+++ +..+. ...+.+..|| ||+.|+..+..
T Consensus 232 ~---~~l~--~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~ 304 (427)
T PRK02889 232 R---RVVA--NFKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDR 304 (427)
T ss_pred E---EEee--cCCCCccceEEC-CCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecC
Confidence 4 2232 122344578998 8998887 5678888888764 3444 44443 2345678999 68888765432
Q ss_pred CCCeeEEEE--EcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCC---CcEEEEECCCCeEEEEcccCCCceEEEEE
Q 016446 162 SSHVPLKIL--SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRTEFMTPSAFIF 236 (389)
Q Consensus 162 s~d~tiklW--d~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D---~tIklWd~~tg~~~~~l~gh~~~v~sv~f 236 (389)
+ +...|| ++.+|+.. .+..+.......+|+ |++..|+..+.+ ..|.+||+.+|+..+...+ ......+|
T Consensus 305 ~--g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~ 378 (427)
T PRK02889 305 G--GAPQIYRMPASGGAAQ-RVTFTGSYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSF 378 (427)
T ss_pred C--CCcEEEEEECCCCceE-EEecCCCCcCceEEC-CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceE
Confidence 2 344555 55566543 333223344567887 788888886644 3799999999987654433 24578899
Q ss_pred cCCCcEEEEEc--CCeEEEE--eCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 237 LYENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 237 spdg~~laS~s--D~tIklW--d~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
+|||+.|+..+ .+.-.|+ +++|+..+.+..+... +...++||
T Consensus 379 spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~-----~~~p~wsp 424 (427)
T PRK02889 379 APNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGD-----VREPSWGP 424 (427)
T ss_pred CCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCC-----CCCCccCC
Confidence 99999998886 3333344 4568777777655432 46677777
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.67 E-value=1.1e-16 Score=168.89 Aligned_cols=231 Identities=13% Similarity=0.131 Sum_probs=176.6
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
|+.|++.+|- |.+|.+++.|..+|+|.++|++||.++.||. .-|..+|.+.++-.+|+ ++.| .-|++
T Consensus 190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs-~ditdlavs~~n~~iaa----aS~D------~vIrv 258 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS-GDITDLAVSSNNTMIAA----ASND------KVIRV 258 (1113)
T ss_pred hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc-cccchhccchhhhhhhh----cccC------ceEEE
Confidence 7889999998 9999999999999999999999999999985 89999999999999988 5688 89999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE-EEE---------------------
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYS--------------------- 138 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~-l~t--------------------- 138 (389)
|-++.|.+. ..||+ +.|.+.+++|| |-- +.+.|||+++||.. -.. ++.
T Consensus 259 Wrl~~~~pv--svLrg--htgavtaiafs-P~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 259 WRLPDGAPV--SVLRG--HTGAVTAIAFS-PRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred EecCCCchH--HHHhc--cccceeeeccC-ccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccc
Confidence 999999873 33654 66778899998 632 77899999999975 110 010
Q ss_pred -----ec------CCcEEEEEEcCCc-eEEEEec--------CCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCC
Q 016446 139 -----IS------DKHVQEIKISPGI-MLLIFNR--------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 198 (389)
Q Consensus 139 -----l~------~~~V~~vafS~g~-~la~~~~--------~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~ 198 (389)
.. .+....++..... .+++.++ .-.+..+..|++.+|++++.+.+|.+.++-+.|+ |++
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H-pfn 407 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH-PFN 407 (1113)
T ss_pred cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec-CCC
Confidence 00 0112222222111 1122211 2335678999999999999999999999999999 555
Q ss_pred CeEEE-EeCCCcEEEEECCCCeEEEE-cccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 199 EKLLV-KQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 199 ~~l~~-~s~D~tIklWd~~tg~~~~~-l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
-+++. ++.||.+-|||+..|..++. ..+|. .+..-+||+||+-++-.- =|.+.|-..
T Consensus 408 ~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred cHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEecc
Confidence 55554 78999999999999998765 46665 455678999999888665 577777765
No 187
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.67 E-value=7.5e-16 Score=152.25 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=112.1
Q ss_pred ceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEE
Q 016446 103 PGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 103 ~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl 181 (389)
+.+|.|- ++.. .||||+.|..||+|-++.++. +..+.+| +-+.+|
T Consensus 16 v~s~dfq-~n~~~~laT~G~D~~iriW~v~r~~~-------------------------~~~~~~V--------~y~s~L 61 (434)
T KOG1009|consen 16 VYSVDFQ-KNSLNKLATAGGDKDIRIWKVNRSEP-------------------------GGGDMKV--------EYLSSL 61 (434)
T ss_pred eEEEEec-cCcccceecccCccceeeeeeeecCC-------------------------CCCceeE--------EEeecc
Confidence 3568886 6666 999999999999998754331 0111111 233344
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC--------C--------CeEEEEcccCCCceEEEEEcCCCcEEEE
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR--------N--------AELMEVSRTEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~--------t--------g~~~~~l~gh~~~v~sv~fspdg~~laS 245 (389)
..|...++.|.|+ |+++.||+++.+++|-||-.. + -...+.+.+|...++.++|+||++++++
T Consensus 62 s~H~~aVN~vRf~-p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 62 SRHTRAVNVVRFS-PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred cCCcceeEEEEEc-CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 4555555555555 445555555555555555433 2 2346778999999999999999999999
Q ss_pred Ec-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 246 FR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 246 ~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
++ |+++++||+. |.+++.+.+|.+. |..+++-|-+|++++=|.|
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~dh~~y-----vqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILDDHEHY-----VQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred eeccceEEEEEeccceeEeeccccccc-----cceeecchhhhhhhhhccC
Confidence 99 9999999997 9999999999986 7999999999999997654
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.2e-15 Score=144.55 Aligned_cols=287 Identities=13% Similarity=0.153 Sum_probs=210.0
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec------cCCCCCcceeEeeecccCceeEEEecC
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR------RGKPDSGFALFESESLKWPGFVEFDDV 111 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~------~g~~~~~~~l~~~~~~~~~~~v~Fs~p 111 (389)
.+.+| ...|+.|-||.+|+.||| |++| ..+++|.+. +.|+ ..+..+.|...|++++|. -
T Consensus 51 D~~~H-~GCiNAlqFS~N~~~L~S----GGDD------~~~~~W~~de~~~~k~~KP---I~~~~~~H~SNIF~L~F~-~ 115 (609)
T KOG4227|consen 51 DVREH-TGCINALQFSHNDRFLAS----GGDD------MHGRVWNVDELMVRKTPKP---IGVMEHPHRSNIFSLEFD-L 115 (609)
T ss_pred hhhhh-ccccceeeeccCCeEEee----cCCc------ceeeeechHHHHhhcCCCC---ceeccCccccceEEEEEc-c
Confidence 46665 489999999999999999 8999 999999983 3333 224445566678899997 6
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEecC----CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCe---EEEEEee
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT---VLKVFYH 183 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~~----~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~---~l~tl~~ 183 (389)
..+.|-||..+++|-+=|+++.+-++.+.. +.|..+..+| +.+||+.+ .++-|-+||+...+ .+.-+..
T Consensus 116 ~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t---~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 116 ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT---RAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe---cCceEEEEeccCCCCCCceeeecC
Confidence 778999999999999999999998888852 4799999996 77777763 45899999998655 1122222
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE--EE-----EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--ME-----VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~--~~-----~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
......++.|.|..+..|++.++-+-+-|||.+.... ++ -|......-.++.|+|.|..|.+-. -.---++|
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 2355688999976778888889999999999875332 11 1122121224577999999999887 44445889
Q ss_pred CC-CcEEEEeccCc--CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC----------------
Q 016446 256 FR-GELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG---------------- 316 (389)
Q Consensus 256 ~~-G~~l~tl~gh~--~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg---------------- 316 (389)
+. .+|..--.+|. +..+.|.+.+..|--|-. ++|||.+ =.|.||-+...
T Consensus 273 ~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~-----------~~i~~WklP~~~ds~G~~~IG~~~~~~ 340 (609)
T KOG4227|consen 273 FISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDH-----------WGIHIWKLPRANDSYGFTQIGHDEEEM 340 (609)
T ss_pred eecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcc-----------cceEEEecCCCccccCccccCcchhhC
Confidence 86 45543333443 344456678888876654 8888764 78999987531
Q ss_pred -------eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 317 -------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 317 -------~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+.+..|+||. ..+..|.|+|-..+|+|.+-.+.+|||.
T Consensus 341 ~~~~~i~~~~~VLrGHR----------------------------------Sv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 341 PSEIFIEKELTVLRGHR----------------------------------SVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred chhheecceeEEEeccc----------------------------------ccccceeecCCcceEeccchhhheeccc
Confidence 1234455554 6889999999999999999999999995
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=5.4e-14 Score=137.94 Aligned_cols=226 Identities=16% Similarity=0.228 Sum_probs=170.0
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCCCeE-EEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~g~~-l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
..|. .|...|+-|+.|| +|+++.+.-.. -.... +..|-+.-||-.-..+++ .+. -+.+|+.++..+..+=.+..
T Consensus 11 ~~~N-qd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~-~~q-pr~Lkv~~~Kk~~~ICe~~f 86 (391)
T KOG2110|consen 11 IGFN-QDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVS-IKQ-PRKLKVVHFKKKTTICEIFF 86 (391)
T ss_pred eeec-cceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEe-cCC-CceEEEEEcccCceEEEEec
Confidence 4475 7888888888776 57888765433 22222 346778888854433333 221 25689999887765544432
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc---CCCceEEEEEcCCCcEEEEEc---CCeEEEEeCC
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQLFLTFR---NRTVAVWNFR 257 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g---h~~~v~sv~fspdg~~laS~s---D~tIklWd~~ 257 (389)
...+.+|.++ -++|+..=++. |.|+|+++-+++++++. |...+-++++++++-+||-=+ -|.|.|||..
T Consensus 87 -pt~IL~VrmN---r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 87 -PTSILAVRMN---RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred -CCceEEEEEc---cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence 2788999986 35555554444 99999999999988754 555676777777777998653 6899999996
Q ss_pred -CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe-EEEEeCCCCeEEEEecCCCCCCCccccc
Q 016446 258 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILTGKCLAKINATNCSPKVDDEL 335 (389)
Q Consensus 258 -G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t-IklWd~~tg~~l~tl~gH~~~~~~~~~~ 335 (389)
-+.+.+++.|.+. +-.++|||||.+||++|+. || ||++++.+|+.+..|+--.-
T Consensus 162 nl~~v~~I~aH~~~-----lAalafs~~G~llATASeK-----------GTVIRVf~v~~G~kl~eFRRG~~-------- 217 (391)
T KOG2110|consen 162 NLQPVNTINAHKGP-----LAALAFSPDGTLLATASEK-----------GTVIRVFSVPEGQKLYEFRRGTY-------- 217 (391)
T ss_pred cceeeeEEEecCCc-----eeEEEECCCCCEEEEeccC-----------ceEEEEEEcCCccEeeeeeCCce--------
Confidence 8889999999987 7999999999999999764 66 79999999999999875330
Q ss_pred CCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 336 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+ -.|++++||||+++|++.|+-+||++..
T Consensus 218 ----------------~--------~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 218 ----------------P--------VSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ----------------e--------eEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 1 3899999999999999999999999875
No 190
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=3.3e-13 Score=136.37 Aligned_cols=306 Identities=13% Similarity=0.126 Sum_probs=191.2
Q ss_pred EEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeE
Q 016446 16 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 95 (389)
Q Consensus 16 ~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~ 95 (389)
+++...++.+.+.|.+|.+.+.++.... +.-..++|+|||+++..++ .| ..+.++|+.+++. +-
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~----rd------g~vsviD~~~~~~-----v~ 72 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVAN----RD------GTVSVIDLATGKV-----VA 72 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEE----TT------SEEEEEETTSSSE-----EE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEc----CC------CeEEEEECCcccE-----EE
Confidence 4567779999999999999999998764 5556789999999988853 45 5788999999886 22
Q ss_pred eeecccCceeEEEecCCCeEEEEec-CCCeEEEEeCCCCeEEEEecC---------CcEEEEEEcC-CceEEEEecCCCC
Q 016446 96 ESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD---------KHVQEIKISP-GIMLLIFNRSSSH 164 (389)
Q Consensus 96 ~~~~~~~~~~v~Fs~pdG~~Las~s-~D~tiklWdl~~g~~l~tl~~---------~~V~~vafS~-g~~la~~~~~s~d 164 (389)
+-..-..+..+++| |||++|+.+. .++++.++|.++.+++.++.. ..|.+|..+| ...++.+-.+.
T Consensus 73 ~i~~G~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~-- 149 (369)
T PF02239_consen 73 TIKVGGNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT-- 149 (369)
T ss_dssp EEE-SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT--
T ss_pred EEecCCCcceEEEc-CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC--
Confidence 22333456789998 9999888665 689999999999999988752 2578888885 44344443332
Q ss_pred eeEEEEEcCCCeEEE--EEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEEEcc----cCCCceEEEEE-
Q 016446 165 VPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR----TEFMTPSAFIF- 236 (389)
Q Consensus 165 ~tiklWd~~tG~~l~--tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~~l~----gh~~~v~sv~f- 236 (389)
+.|-+-|..+.+.+. .+. ....-....|. |++.+++++ ..+..|-++|.++++.+..+. .|...+..+..
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~d-pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php 227 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFD-PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHP 227 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE---TTEEEEEE--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEET
T ss_pred CeEEEEEeccccccceeeec-ccccccccccC-cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCC
Confidence 345455766655443 322 22333566776 677777775 477799999999998876542 23333332221
Q ss_pred --------cCCCcEEEEE-cCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCC
Q 016446 237 --------LYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 237 --------spdg~~laS~-sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~ 306 (389)
+..+...++. +...+.+||.. .+.+++++..... .-+.-+||+++|.....- +...+
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g------lFi~thP~s~~vwvd~~~-------~~~~~ 294 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG------LFIKTHPDSRYVWVDTFL-------NPDAD 294 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--------EE--TT-SEEEEE-TT--------SSHT
T ss_pred CcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc------ceeecCCCCccEEeeccC-------CCCCc
Confidence 2223333333 34566678986 9999999876544 467779999999987211 11248
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCC--cE
Q 016446 307 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG--LV 384 (389)
Q Consensus 307 tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~--tI 384 (389)
+|-++|.++-+.+.++....+ .++.-+.|+|||+.+.-...|+ .|
T Consensus 295 ~v~viD~~tl~~~~~i~~~~~---------------------------------~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 295 TVQVIDKKTLKVVKTITPGPG---------------------------------KRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp -EEEEECCGTEEEE-HHHHHT-----------------------------------EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred eEEEEECcCcceeEEEeccCC---------------------------------CcEeccEECCCCCEEEEEEecCCCEE
Confidence 999999999988888864431 2588999999999776655443 58
Q ss_pred EEcc
Q 016446 385 HVWS 388 (389)
Q Consensus 385 rlW~ 388 (389)
.++|
T Consensus 342 ~v~D 345 (369)
T PF02239_consen 342 VVYD 345 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 191
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.65 E-value=1e-13 Score=139.93 Aligned_cols=242 Identities=11% Similarity=0.062 Sum_probs=158.4
Q ss_pred CCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC---CeEEEEeCC
Q 016446 55 NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLK 131 (389)
Q Consensus 55 dg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D---~tiklWdl~ 131 (389)
.+..++.++..+... ...+.++|...++ .+.+.. ....+.+.+|| |||+.||..+.+ .+|++||+.
T Consensus 154 ~~~~~~~~~~~~~~~-----~~~l~~~d~~g~~---~~~l~~--~~~~~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~ 222 (417)
T TIGR02800 154 FSTRIAYVSKSGKSR-----RYELQVADYDGAN---PQTITR--SREPILSPAWS-PDGQKLAYVSFESGKPEIYVQDLA 222 (417)
T ss_pred cCCEEEEEEEeCCCC-----cceEEEEcCCCCC---CEEeec--CCCceecccCC-CCCCEEEEEEcCCCCcEEEEEECC
Confidence 355566655443111 1345566643222 233432 22234568898 999999988754 489999999
Q ss_pred CCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeC-CC
Q 016446 132 NYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NE 208 (389)
Q Consensus 132 ~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~-D~ 208 (389)
+|+...... ...+.+++|| +|+.|+.+........|.+||+.+|+.. .+..+........|+ |++.+|+..+. ++
T Consensus 223 ~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g 300 (417)
T TIGR02800 223 TGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWS-PDGKSIAFTSDRGG 300 (417)
T ss_pred CCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEEC-CCCCEEEEEECCCC
Confidence 887543322 3557789999 5777876554444568999999988654 444444445567887 68888887653 33
Q ss_pred --cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CC---eEEEEeCCCcEEEEeccCcCCcCCCCeeEEEEC
Q 016446 209 --NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR---TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 209 --tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~---tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fS 282 (389)
.|.++|+.+++..+ +..+...+..++|+|||++|+..+ ++ .|.+||+.+...+.+..+.. ....+|+
T Consensus 301 ~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~------~~~p~~s 373 (417)
T TIGR02800 301 SPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL------DESPSFA 373 (417)
T ss_pred CceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC------CCCceEC
Confidence 57778888877543 444556778889999999999887 65 78899987433344443321 3467899
Q ss_pred CCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 283 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 283 pdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
|||++|+..+.+. ....+.+.+ .+|+....+..+
T Consensus 374 pdg~~l~~~~~~~--------~~~~l~~~~-~~g~~~~~~~~~ 407 (417)
T TIGR02800 374 PNGRMILYATTRG--------GRGVLGLVS-TDGRFRARLPLG 407 (417)
T ss_pred CCCCEEEEEEeCC--------CcEEEEEEE-CCCceeeECCCC
Confidence 9999999888652 123567767 457766666544
No 192
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.65 E-value=1.3e-14 Score=133.90 Aligned_cols=130 Identities=12% Similarity=0.195 Sum_probs=100.2
Q ss_pred CcEEEEECCC-CeEEEEcc-cCCCceEEEEEcCCCcEEEEE--c-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEEC
Q 016446 208 ENLQILDVRN-AELMEVSR-TEFMTPSAFIFLYENQLFLTF--R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 208 ~tIklWd~~t-g~~~~~l~-gh~~~v~sv~fspdg~~laS~--s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fS 282 (389)
+...|+-+.. +.....+. ....+|.+++|+|+|+.||.. . ++.|.|||++++.+.++..+ . ++.|.||
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~--~-----~n~i~ws 109 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQ--P-----RNTISWS 109 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCC--C-----ceEEEEC
Confidence 3445555522 22233332 234569999999999987654 4 78999999999999888632 2 5899999
Q ss_pred CCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCC
Q 016446 283 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 362 (389)
Q Consensus 283 pdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
|+|++||.|+.+ ...|.|++||+.+.+++.+.. |. .
T Consensus 110 P~G~~l~~~g~~--------n~~G~l~~wd~~~~~~i~~~~-~~-----------------------------------~ 145 (194)
T PF08662_consen 110 PDGRFLVLAGFG--------NLNGDLEFWDVRKKKKISTFE-HS-----------------------------------D 145 (194)
T ss_pred CCCCEEEEEEcc--------CCCcEEEEEECCCCEEeeccc-cC-----------------------------------c
Confidence 999999999864 335889999999999998864 33 5
Q ss_pred EEEEEECCCCCEEEEecC------CCcEEEcc
Q 016446 363 ITSLFYDEERNEIYTGNR------HGLVHVWS 388 (389)
Q Consensus 363 V~svafSpdg~~LaSgs~------D~tIrlW~ 388 (389)
+..++|||||++|+++.. |+.++||+
T Consensus 146 ~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 146 ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 789999999999999984 89999997
No 193
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=8.7e-15 Score=142.28 Aligned_cols=281 Identities=14% Similarity=0.202 Sum_probs=189.6
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeC--CCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 91 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spd--g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~ 91 (389)
-.||++.-+|+|||+|..||+.|..+.++. ..++-|.|.-+ ...++++ +.| .+|++||++..... .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~-~~~N~vrf~~~ds~h~v~s~----ssD------G~Vr~wD~Rs~~e~-a 108 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP-ATTNGVRFISCDSPHGVISC----SSD------GTVRLWDIRSQAES-A 108 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC-CcccceEEecCCCCCeeEEe----ccC------CeEEEEEeecchhh-h
Confidence 458999999999999999999999999986 89999999874 5677774 456 78899998655431 2
Q ss_pred ceeEeeecccCceeEEEec-CCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEE
Q 016446 92 FALFESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 92 ~~l~~~~~~~~~~~v~Fs~-pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklW 170 (389)
+..|+... +- .+..|.- -+++++++|..- ...|-.+.||
T Consensus 109 ~~~~~~~~-~~-~f~~ld~nck~~ii~~GtE~--------------------------------------~~s~A~v~lw 148 (376)
T KOG1188|consen 109 RISWTQQS-GT-PFICLDLNCKKNIIACGTEL--------------------------------------TRSDASVVLW 148 (376)
T ss_pred heeccCCC-CC-cceEeeccCcCCeEEecccc--------------------------------------ccCceEEEEE
Confidence 33444221 11 2355541 156677766310 0112346677
Q ss_pred EcCCCeE-EEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe----EEEEcccCCCceEEEEEcCCC--cE
Q 016446 171 SIEDGTV-LKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYEN--QL 242 (389)
Q Consensus 171 d~~tG~~-l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~----~~~~l~gh~~~v~sv~fspdg--~~ 242 (389)
|++..+- ++.+. .|..-|..|.|.|.++..|++||-||-|.|+|++.-. ++++ -.|...|..+.|+.++ +
T Consensus 149 DvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v-iN~~sSI~~igw~~~~ykr- 226 (376)
T KOG1188|consen 149 DVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV-INHGSSIHLIGWLSKKYKR- 226 (376)
T ss_pred EeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh-hcccceeeeeeeecCCcce-
Confidence 7765554 55544 6788899999998889999999999999999997533 2333 3466789999999888 6
Q ss_pred EEEEc-CCeEEEEeCC-CcEEEEeccCcC-----C-cCCC-CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE-e
Q 016446 243 FLTFR-NRTVAVWNFR-GELVTSFEDHLL-----W-HPDC-NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS-S 312 (389)
Q Consensus 243 laS~s-D~tIklWd~~-G~~l~tl~gh~~-----~-~~~~-~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW-d 312 (389)
|-+-+ ..+.++|+++ |.+...|+...- + ..+| ||-...--.|+.+.+.++.+ ++.++|-.- |
T Consensus 227 I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~--------~n~~~~~~~~~ 298 (376)
T KOG1188|consen 227 IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTD--------SNKGTIFPLVD 298 (376)
T ss_pred EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccc--------cCceeEEEeee
Confidence 44456 9999999997 887666653210 0 0000 12222223467777777654 222333222 2
Q ss_pred CCC---CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 313 ILT---GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 313 ~~t---g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..+ ++.++.|+||. .+.|.++.|...+..|+||++||.+.+|.+
T Consensus 299 ~~s~~~~~~~a~l~g~~---------------------------------~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 299 TSSGSLLTEPAILQGGH---------------------------------EEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccccccCccccccCCc---------------------------------HHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 222 44566666643 168999999999999999999999999974
No 194
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.2e-13 Score=141.14 Aligned_cols=235 Identities=11% Similarity=0.078 Sum_probs=157.1
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 103 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~ 103 (389)
.+.++|.+ |...+.+..+. +.+.+..|||||+.|+.++... .. .++.++++.+|+. ..+.. ..+..
T Consensus 180 ~l~~~d~~-g~~~~~l~~~~-~~~~~p~wSpDG~~la~~s~~~-~~------~~l~~~~l~~g~~---~~l~~--~~g~~ 245 (430)
T PRK00178 180 TLQRSDYD-GARAVTLLQSR-EPILSPRWSPDGKRIAYVSFEQ-KR------PRIFVQNLDTGRR---EQITN--FEGLN 245 (430)
T ss_pred EEEEECCC-CCCceEEecCC-CceeeeeECCCCCEEEEEEcCC-CC------CEEEEEECCCCCE---EEccC--CCCCc
Confidence 46777875 66667776654 7899999999999999875321 22 4688889888864 22321 22334
Q ss_pred eeEEEecCCCeEEE-EecCCC--eEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 104 GFVEFDDVNGKVLT-YSAQDS--IYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 104 ~~v~Fs~pdG~~La-s~s~D~--tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
...+|| |||+.|+ +.+.++ .|.+||+.+++... +. ...+.+..|| +|+.|+..+.......|.++|+.+|+.
T Consensus 246 ~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 246 GAPAWS-PDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCeEEC-CCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 468998 8999887 444454 68888998887533 33 2345678999 688887765444446788899988885
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC--e
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 250 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~--tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~--t 250 (389)
.+ +...........|+ |++..++..+ .++ .|.+||+.+|+......+ .......|+|||+.++-.+ ++ .
T Consensus 324 ~~-lt~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 324 ER-VTFVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred EE-eecCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceE
Confidence 43 33222333456776 7888888765 333 588899999886544332 2334568999999998775 33 4
Q ss_pred EEEEeCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 251 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 251 IklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
|.+.+++|...+.|..+... +...+|||
T Consensus 400 l~~~~~~g~~~~~l~~~~g~-----~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSINGRVRLPLPTAQGE-----VREPSWSP 427 (430)
T ss_pred EEEEECCCCceEECcCCCCC-----cCCCccCC
Confidence 66677778776666644332 46667776
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.5e-15 Score=148.05 Aligned_cols=186 Identities=12% Similarity=0.089 Sum_probs=149.5
Q ss_pred EEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE
Q 016446 145 QEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 223 (389)
Q Consensus 145 ~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~ 223 (389)
..|||+ +|..||++ +.|+++|+|+...=+.+.....|...|..+.|+ ||++.|++-+.| ..++|++++|.+++.
T Consensus 148 k~vaf~~~gs~latg---g~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATG---GTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeec---cccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 789999 78999886 667999999987777777777788999999999 788888888888 999999999998887
Q ss_pred cc--cCCCceEEEEEcCCC-----cEEEEEc-CCeEEEEeCC---C----cEEEEeccCcCCcCCCCeeEEEECCCCCEE
Q 016446 224 SR--TEFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFR---G----ELVTSFEDHLLWHPDCNTNNIYITSDQDLI 288 (389)
Q Consensus 224 l~--gh~~~v~sv~fspdg-----~~laS~s-D~tIklWd~~---G----~~l~tl~gh~~~~~~~~v~sv~fSpdG~~l 288 (389)
+. .-.....++.|+-|+ +++++-. -+.|++||+. | ++.+-+..|.. |.+++.|+||+++
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s------iSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS------ISSLAVSDDGKFL 296 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc------ceeEEEcCCCcEE
Confidence 65 233456778999888 4444445 5677777752 3 33333334432 7999999999999
Q ss_pred EEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec-CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEE
Q 016446 289 ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN-ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 367 (389)
Q Consensus 289 aS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~-gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sva 367 (389)
|-|+.| |.|-|.+..+=|+++-.+ .|. .-|+.|.
T Consensus 297 AlGT~d-----------GsVai~~~~~lq~~~~vk~aH~----------------------------------~~VT~lt 331 (398)
T KOG0771|consen 297 ALGTMD-----------GSVAIYDAKSLQRLQYVKEAHL----------------------------------GFVTGLT 331 (398)
T ss_pred EEeccC-----------CcEEEEEeceeeeeEeehhhhe----------------------------------eeeeeEE
Confidence 999875 999999998878877664 354 5899999
Q ss_pred ECCCCCEEEEecCCCcEEE
Q 016446 368 YDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 368 fSpdg~~LaSgs~D~tIrl 386 (389)
|+||.+.+++-|.|.+++|
T Consensus 332 F~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 332 FSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EcCCcCcccccccCCceeE
Confidence 9999999999999998876
No 196
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=4.8e-15 Score=151.35 Aligned_cols=257 Identities=16% Similarity=0.161 Sum_probs=182.1
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC---CcceeEe-eecccCceeEEEecCCC
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD---SGFALFE-SESLKWPGFVEFDDVNG 113 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~---~~~~l~~-~~~~~~~~~v~Fs~pdG 113 (389)
|+.- |.+.|+.++|-|=-.-||++ +.| +.+++|.++..+.+ ...++++ ..|.+.|.+|+.+ ++|
T Consensus 289 tl~s-~~d~ir~l~~~~sep~lit~----sed------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~ 356 (577)
T KOG0642|consen 289 TLRS-HDDCIRALAFHPSEPVLITA----SED------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNG 356 (577)
T ss_pred eeec-chhhhhhhhcCCCCCeEEEe----ccc------cchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCc
Confidence 4443 45899999999988889995 467 67778887221111 1123554 4566777889996 899
Q ss_pred eEEEEecCCCeEEEEeCC------C-Ce---EE--EEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 114 KVLTYSAQDSIYKVFDLK------N-YT---ML--YSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~------~-g~---~l--~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
+.+-||+.||+||.|++. + +. +. +..|.+.||.+++| --++|+++ +.|+|+|+|+...+.. .+
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc---s~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC---SSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee---cCCceEEeeccCCcCc-cc
Confidence 999999999999999543 1 11 11 22345789999999 45556665 5568999999755444 44
Q ss_pred EeecCCce--eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC-------CCceEEEEEcCCCcEEEEEc-CCe
Q 016446 181 FYHLLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-------FMTPSAFIFLYENQLFLTFR-NRT 250 (389)
Q Consensus 181 l~~~~~~~--~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh-------~~~v~sv~fspdg~~laS~s-D~t 250 (389)
|..-..+. .+|+|.......+++...-+--.+.|++++.-++++.-. ...+.-|+..|.+.+..++- |++
T Consensus 433 f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred cCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 54222222 455554211122222233344455566666666655321 24677888999999999998 999
Q ss_pred EEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 251 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 251 IklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
||+.|.. |+++.....|... |.++||-|+|-+|++++.| +.|++|.+....|+.....|.
T Consensus 513 Ir~~dn~~~~~l~s~~a~~~s-----vtslai~~ng~~l~s~s~d-----------~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVAHKDS-----VTSLAIDPNGPYLMSGSHD-----------GSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eecccccccccchheeeccce-----ecceeecCCCceEEeecCC-----------ceeehhhccchheeecccccc
Confidence 9999996 9999999999876 7999999999999998765 999999998899998888886
No 197
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.62 E-value=2.3e-15 Score=148.78 Aligned_cols=150 Identities=13% Similarity=0.172 Sum_probs=128.0
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe---------EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~---------~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
.++.++.|...+..++++++.|..||||-+..++ -+..|..|...|+.|.|+|+|.+||||+ +|.|-||.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5677788864444589999999999999876533 3557899999999999999999999999 89999997
Q ss_pred CC--------C---------cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 256 FR--------G---------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 256 ~~--------G---------~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
.. . ...+.+.+|..- +..++++||+++++++|.| +++++||+..|+.
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d-----iydL~Ws~d~~~l~s~s~d-----------ns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDD-----IYDLAWSPDSNFLVSGSVD-----------NSVRLWDVHAGQL 157 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccc-----hhhhhccCCCceeeeeecc-----------ceEEEEEecccee
Confidence 54 2 235688888765 7899999999999999986 7999999999999
Q ss_pred EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEE
Q 016446 319 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 385 (389)
Q Consensus 319 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIr 385 (389)
++.+.+|. .-|..+++.|-+|++++=|.|...+
T Consensus 158 ~~~~~dh~----------------------------------~yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 158 LAILDDHE----------------------------------HYVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred Eeeccccc----------------------------------cccceeecchhhhhhhhhccCcccc
Confidence 99999998 4888999999999999999887443
No 198
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.6e-13 Score=140.25 Aligned_cols=236 Identities=12% Similarity=0.061 Sum_probs=157.0
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 103 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~ 103 (389)
.+.++|.+ |...+.+.... +.+.+..|||||+.|+.++... .. .++.++++..|+. ..+.. ..+..
T Consensus 199 ~l~i~d~d-G~~~~~l~~~~-~~~~~p~wSPDG~~La~~s~~~-g~------~~L~~~dl~tg~~---~~lt~--~~g~~ 264 (448)
T PRK04792 199 QLMIADYD-GYNEQMLLRSP-EPLMSPAWSPDGRKLAYVSFEN-RK------AEIFVQDIYTQVR---EKVTS--FPGIN 264 (448)
T ss_pred EEEEEeCC-CCCceEeecCC-CcccCceECCCCCEEEEEEecC-CC------cEEEEEECCCCCe---EEecC--CCCCc
Confidence 56666875 66566666654 7899999999999999876432 22 4677888887764 22321 12233
Q ss_pred eeEEEecCCCeEEEE-ecCCCe--EEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 104 GFVEFDDVNGKVLTY-SAQDSI--YKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las-~s~D~t--iklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
...+|| |||+.||. .+.++. |.++|+.+++...... ...+...+|| +|+.|+..+..+....|.++|+.+|+..
T Consensus 265 ~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 265 GAPRFS-PDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCeeEC-CCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 468998 99998875 455664 7777888777533222 3456788999 6888877654444467888899888754
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEe-CCCc--EEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC--eE
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TV 251 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~t--IklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~--tI 251 (389)
+ +..........+|+ |++++|+..+ .++. |-++|+.+|+......+. ...+.+|+|||+.|+..+ ++ .+
T Consensus 344 ~-Lt~~g~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l 419 (448)
T PRK04792 344 R-LTFEGEQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR--LDESPSVAPNGTMVIYSTTYQGKQVL 419 (448)
T ss_pred E-EecCCCCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC--CCCCceECCCCCEEEEEEecCCceEE
Confidence 4 33222334556786 7888888865 4454 455788888764433322 233558999999988765 44 36
Q ss_pred EEEeCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 252 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 252 klWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
.+++.+|+..+.+..+... +...+|||
T Consensus 420 ~~~~~~G~~~~~l~~~~g~-----~~~p~Wsp 446 (448)
T PRK04792 420 AAVSIDGRFKARLPAGQGE-----VKSPAWSP 446 (448)
T ss_pred EEEECCCCceEECcCCCCC-----cCCCccCC
Confidence 6778889888888765443 46777877
No 199
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.61 E-value=3.6e-13 Score=135.97 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=153.4
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 103 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~ 103 (389)
.+.++|.+ |...+.+..+. ..+.+.+|||||+.|+.++..+ .. .++++|++.+|+. ..+. ...+..
T Consensus 171 ~l~~~d~~-g~~~~~l~~~~-~~~~~p~~Spdg~~la~~~~~~-~~------~~i~v~d~~~g~~---~~~~--~~~~~~ 236 (417)
T TIGR02800 171 ELQVADYD-GANPQTITRSR-EPILSPAWSPDGQKLAYVSFES-GK------PEIYVQDLATGQR---EKVA--SFPGMN 236 (417)
T ss_pred eEEEEcCC-CCCCEEeecCC-CceecccCCCCCCEEEEEEcCC-CC------cEEEEEECCCCCE---EEee--cCCCCc
Confidence 57777774 66667776654 6799999999999999875432 23 5788899888864 1221 122334
Q ss_pred eeEEEecCCCeEEEE-ecCCC--eEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 104 GFVEFDDVNGKVLTY-SAQDS--IYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las-~s~D~--tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
.+++|+ |||+.|+. .+.++ .|.+||+.+++...... ...+...+|+ +|++|+..+..+....|.++|+.+|+.
T Consensus 237 ~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~- 314 (417)
T TIGR02800 237 GAPAFS-PDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV- 314 (417)
T ss_pred cceEEC-CCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence 568998 89987764 44444 58889998776533222 2345577899 688887765444445788899888775
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEeCCC---cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CC---eE
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENE---NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR---TV 251 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~---tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~---tI 251 (389)
..+..+......+.|+ |++..++.++.++ .|.+||+.+++...... + ......+|+|||+.|+..+ ++ .+
T Consensus 315 ~~l~~~~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-~-~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 315 RRLTFRGGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-T-GLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred EEeecCCCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-C-CCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 4455445566778887 7888888887665 89999999877654433 2 2345668999999988876 43 45
Q ss_pred EEEeCCCcEEEEeccC
Q 016446 252 AVWNFRGELVTSFEDH 267 (389)
Q Consensus 252 klWd~~G~~l~tl~gh 267 (389)
.+.+.+|+....+..+
T Consensus 392 ~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 392 GLVSTDGRFRARLPLG 407 (417)
T ss_pred EEEECCCceeeECCCC
Confidence 5556667766666543
No 200
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.2e-12 Score=133.57 Aligned_cols=204 Identities=10% Similarity=0.076 Sum_probs=140.0
Q ss_pred ceeEEEecCCCeEEEEecCC---CeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 103 PGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D---~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
+.+.+|| |||+.||..+.+ ..|.+||+.+|+...... ...+.+.+|| +|++||.+...+.+..|.+||+.+|+.
T Consensus 201 ~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 201 ILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred eeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 4568998 999999987754 368899999887543222 3445679999 588887655444446799999998875
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEe-CC--CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC--e
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 250 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D--~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~--t 250 (389)
. .+..+.....+..|+ |++..|+..+ .+ ..|.++|+.+|+..+.... .......+|+|||+.|+-.+ ++ .
T Consensus 280 ~-~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~ 356 (430)
T PRK00178 280 S-RVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFH 356 (430)
T ss_pred E-EcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceE
Confidence 4 455554556678887 7888888766 33 4677778888886543221 12334578999999998775 43 5
Q ss_pred EEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 251 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 251 IklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
|.+||+. |+. +.|.. ... ..+..|||||+.|+-.+.+ +....|.+.++ +|+..+.|..+.
T Consensus 357 l~~~dl~tg~~-~~lt~-~~~-----~~~p~~spdg~~i~~~~~~--------~g~~~l~~~~~-~g~~~~~l~~~~ 417 (430)
T PRK00178 357 VAAQDLQRGSV-RILTD-TSL-----DESPSVAPNGTMLIYATRQ--------QGRGVLMLVSI-NGRVRLPLPTAQ 417 (430)
T ss_pred EEEEECCCCCE-EEccC-CCC-----CCCceECCCCCEEEEEEec--------CCceEEEEEEC-CCCceEECcCCC
Confidence 7788987 553 44542 222 2356899999999987764 12346888886 466666676543
No 201
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=2.4e-13 Score=125.58 Aligned_cols=169 Identities=15% Similarity=0.216 Sum_probs=109.3
Q ss_pred EEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEE--EecCCCeE
Q 016446 48 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT--YSAQDSIY 125 (389)
Q Consensus 48 ~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~La--s~s~D~ti 125 (389)
-.+.|+|.|+.|+.-.....+.=..-......|+.+..-+.. ...+ ....-+.+.+++|+ |+|+.+| +|..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-~~~i-~l~~~~~I~~~~Ws-P~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-VESI-ELKKEGPIHDVAWS-PNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-ccee-eccCCCceEEEEEC-cCCCEEEEEEccCCccc
Confidence 467888888877664431101100011123445555222210 1111 11223347789998 8998864 45568899
Q ss_pred EEEeCCCCeEEEEecCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE
Q 016446 126 KVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 204 (389)
Q Consensus 126 klWdl~~g~~l~tl~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~ 204 (389)
.|||++ ++++.++....+..|.||| |++||+++.++..+.|++||+++.+++.+++
T Consensus 86 ~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---------------------- 142 (194)
T PF08662_consen 86 TLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---------------------- 142 (194)
T ss_pred EEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----------------------
Confidence 999995 8889999888899999995 8888887655444566777766655555443
Q ss_pred eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-------CCeEEEEeCCCcEEEEec
Q 016446 205 QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-------NRTVAVWNFRGELVTSFE 265 (389)
Q Consensus 205 s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-------D~tIklWd~~G~~l~tl~ 265 (389)
|. .+..++|||||++|+++. |+.++||+.+|+++....
T Consensus 143 ----------------------~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 143 ----------------------HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred ----------------------cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 22 356788999999999873 789999999999876543
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=3.8e-15 Score=149.36 Aligned_cols=198 Identities=15% Similarity=0.184 Sum_probs=172.4
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
|+.+.|+ .||+.|+-|+..|-+-..|..++++...+. .+.|.+|+|= ..+++|++.. ..+.++| ..|..|+.
T Consensus 132 PY~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK----~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQK----KYVYVYD-NNGTELHC 205 (545)
T ss_pred Ceeeeec-CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhh----ceEEEec-CCCcEEee
Confidence 6779998 899999999999999999999999999998 6889999999 7889988742 5899999 78999999
Q ss_pred EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C
Q 016446 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 258 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G 258 (389)
++.| ..+..+.|. |..-.|+++++-|-++--|+.+|+++..++.....+....-+|-.-.+-.|- .|||-+|... -
T Consensus 206 lk~~-~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 206 LKRH-IRVARLEFL-PYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hhhc-Cchhhhccc-chhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 9876 788999998 4444555578999999999999999999988888888888999999999996 9999999997 7
Q ss_pred cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 259 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 259 ~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
+.|.-+-.|.++ |.+|||.|+|+|+|+.+.| ..+||||+..=..+.++..
T Consensus 284 ePLvKiLcH~g~-----V~siAv~~~G~YMaTtG~D-----------r~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 284 EPLVKILCHRGP-----VSSIAVDRGGRYMATTGLD-----------RKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred chHHHHHhcCCC-----cceEEECCCCcEEeecccc-----------cceeEeeeccccccceeec
Confidence 777667779888 7999999999999998775 8999999987666655544
No 203
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.58 E-value=2.5e-14 Score=147.63 Aligned_cols=183 Identities=12% Similarity=0.099 Sum_probs=143.3
Q ss_pred ecCCCeEEEEeCC-CCeEE----EEec-CCcEEEEEEc--CCceEEEEecCCCCeeEEEEEcCCCe-------EEEEEee
Q 016446 119 SAQDSIYKVFDLK-NYTML----YSIS-DKHVQEIKIS--PGIMLLIFNRSSSHVPLKILSIEDGT-------VLKVFYH 183 (389)
Q Consensus 119 ~s~D~tiklWdl~-~g~~l----~tl~-~~~V~~vafS--~g~~la~~~~~s~d~tiklWd~~tG~-------~l~tl~~ 183 (389)
++.-|.|-|+++. .|++- -+|. +..|.++++. |.++||.+ .+|+.|+||.+.++- ..+.|+.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa---~ddg~i~lWr~~a~gl~e~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVA---TDDGQINLWRLTANGLPENEMTPEKILTI 675 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeec---ccCceEEEEEeccCCCCcccCCcceeeec
Confidence 3457899999986 46532 2333 5689999999 58999987 456899999998653 3467889
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc-E
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE-L 260 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~-~ 260 (389)
|+..+.++.|.+--.+.|+++++|-||+|||++++.....|.||++.|..+||||||+++||.+ ||+|++++.. ++ .
T Consensus 676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 9999999999966668888899999999999999999999999999999999999999999999 9999999986 44 3
Q ss_pred EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 261 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 261 l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
++.=.|-..- + --.|.|-=||++++..+.|+ ++...|-++|.++
T Consensus 756 v~Eg~gpvgt-R---gARi~wacdgr~viv~Gfdk-------~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 756 VYEGKGPVGT-R---GARILWACDGRIVIVVGFDK-------SSERQVQMYDAQT 799 (1012)
T ss_pred cccCCCCccC-c---ceeEEEEecCcEEEEecccc-------cchhhhhhhhhhh
Confidence 4322222110 1 13566677999999999885 4456788888653
No 204
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.9e-12 Score=136.53 Aligned_cols=325 Identities=10% Similarity=0.102 Sum_probs=206.8
Q ss_pred EEee-ccEEEEEecCceEEEEecccce---eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec
Q 016446 9 IVAA-RDIVFALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 84 (389)
Q Consensus 9 i~~~-~~~~a~~~~~gtiklW~~~tg~---~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~ 84 (389)
|++. .-.++...++..+-+|+..++. +.+....+|...+.++++||.+..+|+ +..| .+|.+|. .
T Consensus 166 I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa----~d~d------GrI~vw~-d 234 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAA----GDSD------GRILVWR-D 234 (792)
T ss_pred EEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEE----eccC------CcEEEEe-c
Confidence 4444 3335555666777788876533 233345556666899999999999888 4455 5688886 3
Q ss_pred cC--CCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEe
Q 016446 85 RG--KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFN 159 (389)
Q Consensus 85 ~g--~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~ 159 (389)
-| +-..+..+|. =|-.-+.+++|| +||.+|.||+..+-+-+|.+++++ .+-|+ +..|..+++| |+...+...
T Consensus 235 ~~~~~~~~t~t~lH-WH~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 235 FGSSDDSETCTLLH-WHHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred cccccccccceEEE-ecccccceeEEe-cCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe
Confidence 33 1112333432 111135679999 899999999999999999999998 33344 6899999999 566555543
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCc-----------eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc----
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHR-----------NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---- 224 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~-----------~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l---- 224 (389)
.|+.|.|-...+=+...+..|-... ...+.+. |....++.-+..++|++||+.+-+.+..+
T Consensus 312 ---~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~ 387 (792)
T KOG1963|consen 312 ---EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCD 387 (792)
T ss_pred ---cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc-CCCCceeecCCCceEEEEeccccceeeeEEEEe
Confidence 3577888776655555555432222 2344544 34567777889999999999886654332
Q ss_pred -c------cCCCceEEEEEcCCCcEEEEEc---------CC--eEEEEeCCCc----EEEEeccCcCCcCCCCeeEEEEC
Q 016446 225 -R------TEFMTPSAFIFLYENQLFLTFR---------NR--TVAVWNFRGE----LVTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 225 -~------gh~~~v~sv~fspdg~~laS~s---------D~--tIklWd~~G~----~l~tl~gh~~~~~~~~v~sv~fS 282 (389)
+ -+.-.+.+++++-.|..++|.- || .+|.|-.++. .|.|-- ..||.++.|-.+.++
T Consensus 388 ~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I--~~PH~~~~vat~~~~ 465 (792)
T KOG1963|consen 388 ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI--NNPHGNAFVATIFLN 465 (792)
T ss_pred ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE--ecCCCceeEEEEEec
Confidence 1 2334688899999999999862 33 5789987532 222221 233444545556666
Q ss_pred CCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccC
Q 016446 283 SDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALE 361 (389)
Q Consensus 283 pdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (389)
|-.. ..++++. ||.+|||-+..-+-+ ..|. + -|.-.-+ -.+|-.
T Consensus 466 ~~rs~~~vta~~-----------dg~~KiW~~~~~~n~---~k~~-------------s-----~W~c~~i---~sy~k~ 510 (792)
T KOG1963|consen 466 PTRSVRCVTASV-----------DGDFKIWVFTDDSNI---YKKS-------------S-----NWTCKAI---GSYHKT 510 (792)
T ss_pred CcccceeEEecc-----------CCeEEEEEEeccccc---CcCc-------------c-----ceEEeee---eccccC
Confidence 6544 7788765 599999986432211 1111 0 0100000 001235
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 362 DITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 362 ~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
++.+++||.||. |.+.|.|++|.+||.
T Consensus 511 ~i~a~~fs~dGs-lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 511 PITALCFSQDGS-LLAVSFDDTITIWDY 537 (792)
T ss_pred cccchhhcCCCc-EEEEecCCEEEEecC
Confidence 899999999995 666778999999983
No 205
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=7.5e-14 Score=150.57 Aligned_cols=264 Identities=10% Similarity=0.035 Sum_probs=193.3
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
.++|.+++ ---+.+++...|..++-+...+-..+. .+.|+..+- +..-++..+..++..++.++..
T Consensus 17 ~~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~---------~~~~v~~~~~~~v~~~~~~~~~ 82 (967)
T KOG0974|consen 17 SDYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLL---------SGKIVTCAKSDEVYVKEASNQI 82 (967)
T ss_pred cceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceec---------cceEEEEEeecceeecchhhhh
Confidence 56776664 446779999889888887776544455 445553322 3333455555555555442211
Q ss_pred eeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC-C-----cEEEEEEcC-CceEEEEecCCCCe
Q 016446 93 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K-----HVQEIKISP-GIMLLIFNRSSSHV 165 (389)
Q Consensus 93 ~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~-~-----~V~~vafS~-g~~la~~~~~s~d~ 165 (389)
. .....|+..-.|. -+.+.++....+..+-+||.+.+..++.... + ...-+-+|+ --++++++. -+
T Consensus 83 ~---~~~s~wi~g~~l~-~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv---~~ 155 (967)
T KOG0974|consen 83 I---ERFSDWIFGAKLF-EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV---FG 155 (967)
T ss_pred h---hhccccccccchh-hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc---cc
Confidence 1 1223344444444 3456777777888999999988887766653 2 233455663 445555432 36
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE-EcccCCCceEEEEEcCCCcEEE
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~-~l~gh~~~v~sv~fspdg~~la 244 (389)
.|-+|+..--+.-..+.+|.+.++++.++ .++.++++.|+|.+||+|++++++.+. +.=||+..||.+.|+|+ +++
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~ 232 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RII 232 (967)
T ss_pred cEEEEeccccCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeE
Confidence 89999987322223588999999999998 689999999999999999999998776 77799999999999999 899
Q ss_pred EEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 245 TFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 245 S~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
|++ |-|.++|+.+|+.+.++++|...+ ++.++..++.-.+++++. |+++|+||+.+
T Consensus 233 t~gedctcrvW~~~~~~l~~y~~h~g~~----iw~~~~~~~~~~~vT~g~-----------Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGTQLEVYDEHSGKG----IWKIAVPIGVIIKVTGGN-----------DSTLKLWDLNG 289 (967)
T ss_pred EeccceEEEEEecccceehhhhhhhhcc----eeEEEEcCCceEEEeecc-----------Ccchhhhhhhc
Confidence 999 999999999999999999999876 899999999999998765 59999999763
No 206
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=6.8e-13 Score=124.58 Aligned_cols=199 Identities=11% Similarity=0.023 Sum_probs=136.6
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCC---------Ce-EEEEe--cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEc
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKN---------YT-MLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 172 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~---------g~-~l~tl--~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~ 172 (389)
+-+.| |-+|+|+.|..+|+|-+..++. |+ .+.+. |...|..++|.+.-.| ++ .|+.||=|-.
T Consensus 15 ~qa~s-p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Ll-s~----gdG~V~gw~W 88 (325)
T KOG0649|consen 15 AQAIS-PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLL-SG----GDGLVYGWEW 88 (325)
T ss_pred HHhhC-CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhhee-ec----cCceEEEeee
Confidence 35676 7799999999999999998753 33 23333 3568999999966555 43 3478887764
Q ss_pred CCCeE------EEE--EeecC-----CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEE-cC
Q 016446 173 EDGTV------LKV--FYHLL-----HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF-LY 238 (389)
Q Consensus 173 ~tG~~------l~t--l~~~~-----~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f-sp 238 (389)
..-+. +-. .+.|. ..++++-.. |....++.++.|+.|.-||+++|+..++++||++.|.+|+- +.
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld-P~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD-PSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEec-cCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 32111 111 11222 233444444 33445555559999999999999999999999999999999 67
Q ss_pred CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCc---CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 239 ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH---PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 239 dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~---~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
.+|. .||+ |||+||||.. ++++++++--..+. |+..-|--|.--|..+|++|+. ..+-||++
T Consensus 168 ~~qi-lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------------p~lslwhL 234 (325)
T KOG0649|consen 168 NGQI-LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------------PKLSLWHL 234 (325)
T ss_pred Ccce-eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------------CceeEEec
Confidence 7775 4777 9999999996 99999887432210 0001122344456778888764 46889999
Q ss_pred CCCeEEEEec
Q 016446 314 LTGKCLAKIN 323 (389)
Q Consensus 314 ~tg~~l~tl~ 323 (389)
..-+|..++.
T Consensus 235 rsse~t~vfp 244 (325)
T KOG0649|consen 235 RSSESTCVFP 244 (325)
T ss_pred cCCCceEEEe
Confidence 9888777664
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.5e-13 Score=136.53 Aligned_cols=192 Identities=15% Similarity=0.229 Sum_probs=138.7
Q ss_pred ccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe
Q 016446 100 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
++....|||+ +||..||+++.||++|+|+..+-+.+.... +..|.++.|| ||+.||+-+. | ..++|++++|-
T Consensus 144 ~g~~k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 144 FGQQKVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D-SARVWSVNTGA 218 (398)
T ss_pred cCcceEEEEc-CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C-ceEEEEeccCc
Confidence 3444569998 899999999999999999976666554443 5799999999 6778887643 3 79999999999
Q ss_pred EEEEEeec-CC-ceeEEEEEecCC---C-eEEEEe-CCCcEEEEECCC--C----eEEEEcccCCCceEEEEEcCCCcEE
Q 016446 177 VLKVFYHL-LH-RNKKVDFIEQFN---E-KLLVKQ-ENENLQILDVRN--A----ELMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 177 ~l~tl~~~-~~-~~~~v~f~~~~~---~-~l~~~s-~D~tIklWd~~t--g----~~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
++++++.. .. ....+.|+ .++ . ++++.. .-+.|++||+.. + +..+.+.. ...+.+++.|+||+++
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~-~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFS-VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFL 296 (398)
T ss_pred hhhhcCCcccchhhhhceec-ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcEE
Confidence 98887621 11 12566776 333 2 333332 456667666532 2 22222233 3479999999999999
Q ss_pred EEEc-CCeEEEEeCC-CcEEE-EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 244 LTFR-NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 244 aS~s-D~tIklWd~~-G~~l~-tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
|-|+ ||.|-|.+.. =++++ .-+.|... |..|.|+||-+++++-|.| .+++|--+.
T Consensus 297 AlGT~dGsVai~~~~~lq~~~~vk~aH~~~-----VT~ltF~Pdsr~~~svSs~-----------~~~~v~~l~ 354 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQRLQYVKEAHLGF-----VTGLTFSPDSRYLASVSSD-----------NEAAVTKLA 354 (398)
T ss_pred EEeccCCcEEEEEeceeeeeEeehhhheee-----eeeEEEcCCcCcccccccC-----------CceeEEEEe
Confidence 9999 9999999996 55544 44567765 8999999999999997664 566666543
No 208
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.4e-12 Score=134.86 Aligned_cols=203 Identities=10% Similarity=0.108 Sum_probs=137.0
Q ss_pred ceeEEEecCCCeEEEEecCCC---eEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~---tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
+.+.+|| |||+.||..+.+. .|.+||+.+|+...... .....+.+|| +|+.||.+........|.++|+.+|+.
T Consensus 220 ~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 220 LMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred ccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 3468998 9999999876532 68888998887532211 2334578999 688887764444445688899988875
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCeEEEE-cccCCCceEEEEEcCCCcEEEEEc--CCeE
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR--NRTV 251 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~--tIklWd~~tg~~~~~-l~gh~~~v~sv~fspdg~~laS~s--D~tI 251 (389)
. .+..+........|+ |++..|+..+ .++ .|.++|+.+|+..+. +.++ .....+|+|||++|+-.+ ++..
T Consensus 299 ~-~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 299 T-RITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred E-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEEEEEecCCce
Confidence 4 455444556778898 7888888765 344 466668888886553 2333 334578999999988765 5545
Q ss_pred EE--EeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 252 AV--WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 252 kl--Wd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
+| +|+. |+. +.+.... . ..+..|+|||++|+-.+.+. ....+.++|+ +|+..+.|..+.
T Consensus 375 ~I~~~dl~~g~~-~~lt~~~-~-----d~~ps~spdG~~I~~~~~~~--------g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 375 NIARQDLETGAM-QVLTSTR-L-----DESPSVAPNGTMVIYSTTYQ--------GKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEECCCCCe-EEccCCC-C-----CCCceECCCCCEEEEEEecC--------CceEEEEEEC-CCCceEECcCCC
Confidence 55 5776 543 4454331 1 23568999999998876541 2245888895 688888887665
No 209
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=6.9e-12 Score=128.52 Aligned_cols=292 Identities=14% Similarity=0.096 Sum_probs=195.8
Q ss_pred cCceEEEEecccceeeeeeecCC--cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeee
Q 016446 21 HSGVCAAFSRETNRRICFLNVSP--DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE 98 (389)
Q Consensus 21 ~~gtiklW~~~tg~~l~tl~~~~--~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~ 98 (389)
.+-.+.+|+.-.-+...+..... ....+..++|++|+..|.+ .+ ..++|.+...++. +++..
T Consensus 9 sSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-----~~------~~v~i~~~~~~~~-----~lt~~ 72 (566)
T KOG2315|consen 9 SSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-----DN------QVVKVFEIATLKV-----VLCVE 72 (566)
T ss_pred ccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-----cC------CeEEEEEccCCcE-----EEEec
Confidence 35567788865323333333331 3568899999999988873 44 6788888877764 45544
Q ss_pred cccCceeEEEecCCCeEEEEec-----CC-----CeEEEEeCCCCeEEEEec---CCcEEEEEEcCCceEEEEecCCCCe
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSA-----QD-----SIYKVFDLKNYTMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHV 165 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s-----~D-----~tiklWdl~~g~~l~tl~---~~~V~~vafS~g~~la~~~~~s~d~ 165 (389)
.. ....+.|| |-|.+|.+=- .| -.+++|+++++.....++ +.. |...||++..|++--.. +
T Consensus 73 ~~-~~~~L~fS-P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~---n 146 (566)
T KOG2315|consen 73 LK-KTYDLLFS-PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVS---N 146 (566)
T ss_pred cc-eeeeeeec-ccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhc---c
Confidence 44 66789998 8898887532 23 346699999977666664 222 68999955544332222 4
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeEEEEEecCCC----------------------------------------------
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE---------------------------------------------- 199 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~---------------------------------------------- 199 (389)
.++++++..-+... -+.|..++....++ |.++
T Consensus 147 ev~f~~~~~f~~~~-~kl~~~~i~~f~lS-pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~ 224 (566)
T KOG2315|consen 147 EVQFYDLGSFKTIQ-HKLSVSGITMLSLS-PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMK 224 (566)
T ss_pred eEEEEecCCcccee-eeeeccceeeEEec-CCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEE
Confidence 67888865422110 01233444444444 2111
Q ss_pred -------eEEEE--eCC---------CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc---CCeEEEEeCCC
Q 016446 200 -------KLLVK--QEN---------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRG 258 (389)
Q Consensus 200 -------~l~~~--s~D---------~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s---D~tIklWd~~G 258 (389)
.|+.. --| .++.+.+.++-+|+--| .-.++|.+|.|+|.|+-++... --++-|+|++|
T Consensus 225 WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~ 303 (566)
T KOG2315|consen 225 WNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG 303 (566)
T ss_pred eccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC
Confidence 11111 122 35666666522333322 2367999999999998888763 77999999999
Q ss_pred cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCC
Q 016446 259 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSS 338 (389)
Q Consensus 259 ~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~ 338 (389)
..+..|- .++ =+.+.|||.|++|+-++.++ --|.|-+||+.+-++|.++..-.
T Consensus 304 ~~v~df~--egp-----RN~~~fnp~g~ii~lAGFGN--------L~G~mEvwDv~n~K~i~~~~a~~------------ 356 (566)
T KOG2315|consen 304 KPVFDFP--EGP-----RNTAFFNPHGNIILLAGFGN--------LPGDMEVWDVPNRKLIAKFKAAN------------ 356 (566)
T ss_pred CEeEeCC--CCC-----ccceEECCCCCEEEEeecCC--------CCCceEEEeccchhhccccccCC------------
Confidence 9998774 333 27999999999999999863 45899999999999999987643
Q ss_pred CCCCccccccccceecccccccCCEEEEEECCCCCEEEEec------CCCcEEEcc
Q 016446 339 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN------RHGLVHVWS 388 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs------~D~tIrlW~ 388 (389)
-+-+.|+|||++++++. -|+-+|||+
T Consensus 357 ------------------------tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 357 ------------------------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred ------------------------ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 34489999999999988 389999996
No 210
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.3e-11 Score=126.96 Aligned_cols=203 Identities=10% Similarity=0.066 Sum_probs=131.9
Q ss_pred eeEEEecCCCeE--EEEec-CC--CeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecC--CCCeeEEEEEcCC
Q 016446 104 GFVEFDDVNGKV--LTYSA-QD--SIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRS--SSHVPLKILSIED 174 (389)
Q Consensus 104 ~~v~Fs~pdG~~--Las~s-~D--~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~--s~d~tiklWd~~t 174 (389)
.+-+|| |||+. ++.-| .+ ..|.+.++.+|+...... .......+|| ||++||..+.. ..|..+.+|++.+
T Consensus 188 ~sP~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 188 ITPTWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred ccceEc-cCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 346898 99975 33233 23 356677888877432222 3345578999 68888876532 3355677788876
Q ss_pred C---eEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEEC--CC-CeEEEEcccCCCceEEEEEcCCCcEEEEEc
Q 016446 175 G---TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV--RN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 175 G---~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~--~t-g~~~~~l~gh~~~v~sv~fspdg~~laS~s 247 (389)
| +..+.+.++.+...+..|+ ||+.+|+..+ .++..+||.+ .. +...+.+..+...+...+|||||+.|+..+
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEE
Confidence 3 4444443333444678887 7888888866 6777777754 32 333455555556778899999999998764
Q ss_pred --C--CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 248 --N--RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 248 --D--~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
+ ..|.+||+. |++ +.|...... +.+..|||||++|+-.+.+ .....|.+||+.+|+.....
T Consensus 346 ~~~g~~~I~v~dl~~g~~-~~Lt~~~~~-----~~~p~wSpDG~~L~f~~~~--------~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 346 VIKGVRQICVYDLATGRD-YQLTTSPEN-----KESPSWAIDSLHLVYSAGN--------SNESELYLISLITKKTRKIV 411 (428)
T ss_pred cCCCCcEEEEEECCCCCe-EEccCCCCC-----ccceEECCCCCEEEEEECC--------CCCceEEEEECCCCCEEEee
Confidence 3 379999997 655 444433222 4689999999999865433 23468999999877754433
No 211
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.52 E-value=6.1e-12 Score=132.44 Aligned_cols=256 Identities=10% Similarity=0.069 Sum_probs=178.9
Q ss_pred eeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE--EEEe------cCCcEEEEE
Q 016446 77 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSI------SDKHVQEIK 148 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~--l~tl------~~~~V~~va 148 (389)
.+.||++...- .-...| +....+..++|+|-+..+||.|..+|+|-+||+..+.. ...+ |...|..|.
T Consensus 223 ~~~vW~~~~p~--~Pe~~~--~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 223 VLLVWSLKNPN--TPELVL--ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred eEEEEecCCCC--CceEEE--ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 57788886541 112233 34444567999977889999999999999999986664 3222 135677766
Q ss_pred Ec--C-CceEEEEecCCCCeeEEEEEcCC------CeEEEEEe------ecCCceeEEEEEecCCCeEEEEeCCCcEEE-
Q 016446 149 IS--P-GIMLLIFNRSSSHVPLKILSIED------GTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQI- 212 (389)
Q Consensus 149 fS--~-g~~la~~~~~s~d~tiklWd~~t------G~~l~tl~------~~~~~~~~v~f~~~~~~~l~~~s~D~tIkl- 212 (389)
.- + +.-+++++ .|+.|..|++.- +.++.... .-...+..+.|.+-++..+++|.++|.|.-
T Consensus 299 W~~~~~~~~f~s~s---sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLS---SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EeccCCCCceEEEe---cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 65 2 44566664 368999998753 22222222 112345889998777889999999999876
Q ss_pred --EECCCCe-----EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEEC
Q 016446 213 --LDVRNAE-----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 213 --Wd~~tg~-----~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fS 282 (389)
++.+.+. .+.++..|.+.|+++-++|-+..+..++ |-+||||.-. -..+..++.+... |.++++|
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~-----v~~vaWS 450 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY-----VTDVAWS 450 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce-----eeeeEEc
Confidence 3443333 2446778999999999999988777666 9999999864 4456667666654 7999999
Q ss_pred CCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCCeE--EEEecCCCCCCCcccccCCCCCCCccccccccceecccccc
Q 016446 283 SDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 359 (389)
Q Consensus 283 pdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
|--- .+|++.. ||.|.|||+..-.+ +.+..-+.
T Consensus 451 ptrpavF~~~d~-----------~G~l~iWDLl~~~~~Pv~s~~~~~--------------------------------- 486 (555)
T KOG1587|consen 451 PTRPAVFATVDG-----------DGNLDIWDLLQDDEEPVLSQKVCS--------------------------------- 486 (555)
T ss_pred CcCceEEEEEcC-----------CCceehhhhhccccCCcccccccc---------------------------------
Confidence 9653 4444433 69999999875332 22222221
Q ss_pred cCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 360 LEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 360 ~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
...+.+.++|+|+.|+.|...|++++|+.
T Consensus 487 -~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 487 -PALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred -cccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 46777899999999999999999999863
No 212
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1e-11 Score=127.85 Aligned_cols=239 Identities=7% Similarity=-0.004 Sum_probs=150.4
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEE--EEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeeccc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLIT--VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 101 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s--~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~ 101 (389)
.+.+.|.+ |...+.|.... +.+.+=+|||||+.++. +|... .. .++.+.++..|+. ..+- ...+
T Consensus 166 ~l~~~d~d-G~~~~~lt~~~-~~~~sP~wSPDG~~~~~~y~S~~~-g~------~~I~~~~l~~g~~---~~lt--~~~g 231 (428)
T PRK01029 166 ELWSVDYD-GQNLRPLTQEH-SLSITPTWMHIGSGFPYLYVSYKL-GV------PKIFLGSLENPAG---KKIL--ALQG 231 (428)
T ss_pred eEEEEcCC-CCCceEcccCC-CCcccceEccCCCceEEEEEEccC-CC------ceEEEEECCCCCc---eEee--cCCC
Confidence 45566665 66666676654 67788899999987433 44322 22 5777788877763 2232 1233
Q ss_pred CceeEEEecCCCeEEEEecC-----CCeEEEEeCCCC---eEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNY---TMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~-----D~tiklWdl~~g---~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklW 170 (389)
.....+|| |||+.||..+. |-.+.+|++.++ +....... ....+.+|| ||+.|+..+..+....|.+.
T Consensus 232 ~~~~p~wS-PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 232 NQLMPTFS-PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CccceEEC-CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 34568998 99999886553 334566887653 33333322 345678999 68888876533222234444
Q ss_pred EcCC-CeEEEEEeecCCceeEEEEEecCCCeEEEEeC---CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE
Q 016446 171 SIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 171 d~~t-G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~---D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~ 246 (389)
++.. |...+.+..+...+....|+ |++++|+..+. ...|.+||+.+|++.+...+ ...+...+|+|||+.|+-.
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ECcccccceEEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEE
Confidence 5432 34455565544566778887 78988887653 35799999999988665443 3467789999999988744
Q ss_pred -c---CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCC
Q 016446 247 -R---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 285 (389)
Q Consensus 247 -s---D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG 285 (389)
. ...|.+||++ |+..+ |...... +...+|||-.
T Consensus 389 ~~~~g~~~L~~vdl~~g~~~~-Lt~~~g~-----~~~p~Ws~~~ 426 (428)
T PRK01029 389 AGNSNESELYLISLITKKTRK-IVIGSGE-----KRFPSWGAFP 426 (428)
T ss_pred ECCCCCceEEEEECCCCCEEE-eecCCCc-----ccCceecCCC
Confidence 2 3578888997 54433 3322222 4567788754
No 213
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=6.8e-12 Score=133.71 Aligned_cols=268 Identities=12% Similarity=0.074 Sum_probs=174.7
Q ss_pred EEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecC--CCeEEEEecCCCeEE
Q 016446 49 SLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYK 126 (389)
Q Consensus 49 sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p--dG~~Las~s~D~tik 126 (389)
--.||+|++.|+.. .+ ..+.++.+.+|++.. .| .++.....++.+.+. +--++..++.||+|+
T Consensus 21 ~avfSnD~k~l~~~----~~-------~~V~VyS~~Tg~~i~--~l--~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~ 85 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC----TG-------NFVKVYSTATGECIT--SL--EDHTAPLTSVIVLPSSENANYLIVCSLDGTIR 85 (792)
T ss_pred ccccccCCcEEEEe----eC-------CEEEEEecchHhhhh--hc--ccccCccceeeecCCCccceEEEEEecCccEE
Confidence 34799999999883 23 578889999999842 22 234444556777632 224677999999999
Q ss_pred EEeCCCCeEEEEec-CCcEEEEEEcC----CceEEEEecC----------CCCeeEEEEEcCC--CeEEEEEeecCCcee
Q 016446 127 VFDLKNYTMLYSIS-DKHVQEIKISP----GIMLLIFNRS----------SSHVPLKILSIED--GTVLKVFYHLLHRNK 189 (389)
Q Consensus 127 lWdl~~g~~l~tl~-~~~V~~vafS~----g~~la~~~~~----------s~d~tiklWd~~t--G~~l~tl~~~~~~~~ 189 (389)
+||...+.++.++. +-.|.+..+.| -...+.-+.. ..-.+++-..+.+ +.....+..|.- -.
T Consensus 86 vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~ 164 (792)
T KOG1963|consen 86 VWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PK 164 (792)
T ss_pred EecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-Cc
Confidence 99999999999886 34555555532 1112211111 0001111111111 000011111111 13
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE-----cccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCC-----
Q 016446 190 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-----SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG----- 258 (389)
Q Consensus 190 ~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~-----l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G----- 258 (389)
.|.++ + .+.+..--.+..+.+|++.++. ..+ -..|...+..++|||.++++|++- ||.|.+|.--|
T Consensus 165 ~I~~~-~-~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 165 SIVDN-N-SGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred cEEEc-C-CceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 34443 2 3344444577889999998865 222 245777889999999999999997 99999998544
Q ss_pred cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCC
Q 016446 259 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSS 338 (389)
Q Consensus 259 ~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~ 338 (389)
+-.++|.=|... |++++||+||-+|.||+. .+-+-+|.+.|++ -+-|.-=.
T Consensus 242 ~t~t~lHWH~~~-----V~~L~fS~~G~~LlSGG~-----------E~VLv~Wq~~T~~-kqfLPRLg------------ 292 (792)
T KOG1963|consen 242 ETCTLLHWHHDE-----VNSLSFSSDGAYLLSGGR-----------EGVLVLWQLETGK-KQFLPRLG------------ 292 (792)
T ss_pred ccceEEEecccc-----cceeEEecCCceEeeccc-----------ceEEEEEeecCCC-cccccccC------------
Confidence 223445445544 899999999999999876 4889999999887 33332211
Q ss_pred CCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 339 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
.+|..+.+|||+...+..-+|+.|.|
T Consensus 293 ----------------------s~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 293 ----------------------SPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred ----------------------CeeEEEEEcCCCCeEEEEecCceEEE
Confidence 59999999999999999999999876
No 214
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=4.1e-12 Score=124.81 Aligned_cols=184 Identities=11% Similarity=0.162 Sum_probs=142.5
Q ss_pred eEEEEecCCC--eEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec-CCcee
Q 016446 114 KVLTYSAQDS--IYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-LHRNK 189 (389)
Q Consensus 114 ~~Las~s~D~--tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~-~~~~~ 189 (389)
.+||-.+.+. .+|+-+.+.+..+-.+. ...|.+|++.-..+++.- .. .|.+.|+.+=++|+|+..- .+...
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~L-ee----~IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCL-EE----SIYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEE-cc----cEEEEecccceeehhhhccCCCccc
Confidence 3555555444 48999988777665554 578999999976666544 22 4999999999999999743 22333
Q ss_pred EEEEEecC-CCeEEE-Ee-CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CC-eEEEEeCC-CcEEEE
Q 016446 190 KVDFIEQF-NEKLLV-KQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFR-GELVTS 263 (389)
Q Consensus 190 ~v~f~~~~-~~~l~~-~s-~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~-tIklWd~~-G~~l~t 263 (389)
-.|+++.. +-+++- ++ .-|.|.|||+.+-+...+++.|...+-+++|+|+|.+|||+| .| -||+..+. |+.+..
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 55555222 236666 44 669999999999999999999999999999999999999999 66 57999995 999999
Q ss_pred eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC
Q 016446 264 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
|+--.-+ +.|.+++||||+++|++.|. -+||.|+-+.+-
T Consensus 212 FRRG~~~---~~IySL~Fs~ds~~L~~sS~-----------TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 212 FRRGTYP---VSIYSLSFSPDSQFLAASSN-----------TETVHIFKLEKV 250 (391)
T ss_pred eeCCcee---eEEEEEEECCCCCeEEEecC-----------CCeEEEEEeccc
Confidence 9855444 35899999999999998754 489999998643
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.50 E-value=7.2e-12 Score=137.21 Aligned_cols=262 Identities=13% Similarity=0.138 Sum_probs=175.4
Q ss_pred eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC-------CeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCee
Q 016446 97 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-------YTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVP 166 (389)
Q Consensus 97 ~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~-------g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~t 166 (389)
+++...+..++-++|++.+++|||.|||||+||+.. .++..+++ +..|..|.+. .|+.+|.+ +.|+.
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~---t~DG~ 1121 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS---TKDGS 1121 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE---cCCCe
Confidence 455555566788778889999999999999999742 12334444 6789999999 68999887 45688
Q ss_pred EEEEEcCC-------CeEEEEEeecC-Cce-eEEEEEecCCC-eEEEEeCCCcEEEEECCCCeEEEEcc--cCCCceEEE
Q 016446 167 LKILSIED-------GTVLKVFYHLL-HRN-KKVDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAF 234 (389)
Q Consensus 167 iklWd~~t-------G~~l~tl~~~~-~~~-~~v~f~~~~~~-~l~~~s~D~tIklWd~~tg~~~~~l~--gh~~~v~sv 234 (389)
|++-++.- +++.+....+. +.+ .--+|...... .++.+-.-+-|..||+++.+-..+++ -..+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 98888764 22222222111 111 22233222233 44446678899999998877655542 345689999
Q ss_pred EEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEE---ECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 235 IFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIY---ITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 235 ~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~---fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
+.+|.++.++.|. -|.+-+||++ +.++...+ |....+ ++-|. +.|..-..++++. +..+-|-
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~~~~---i~~v~~~~~~~~~S~~vs~~~---------~~~nevs 1268 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPARAP---IRHVWLCPTYPQESVSVSAGS---------SSNNEVS 1268 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCceeeccc-CcccCC---cceEEeeccCCCCceEEEecc---------cCCCcee
Confidence 9999999999997 9999999998 99888776 222111 44444 4455567887764 1347899
Q ss_pred EEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 310 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 310 lWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+|++++|.|-++|..-++.|..-.+.++...-+ +.- -.....++..-+..+.+|+.|..||.||.
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~k--------------p~~-~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARK--------------PDS-LAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCC--------------CCc-ccceeeecccCCceeeecCCccceeeccC
Confidence 999999999999987644333323333321100 111 23334555666678999999999999983
No 216
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.49 E-value=3.7e-11 Score=135.80 Aligned_cols=253 Identities=14% Similarity=0.181 Sum_probs=167.0
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC----------------CcEEEEEEc-CCceEEEEecC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----------------KHVQEIKIS-PGIMLLIFNRS 161 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~----------------~~V~~vafS-~g~~la~~~~~ 161 (389)
.+..|..|++++.+|.+.++-+..+.|+++|. +|+.+..+.. +.-..|+|. +++.|.++...
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 34567789998447889999999999999997 5665544321 124789998 57777776433
Q ss_pred CCCeeEEEEEcCCCeEEEEEeec-----------------CCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEE
Q 016446 162 SSHVPLKILSIEDGTVLKVFYHL-----------------LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEV 223 (389)
Q Consensus 162 s~d~tiklWd~~tG~~l~tl~~~-----------------~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg~~~~~ 223 (389)
.+.|+..|+.+|. +.+|.+- ...-+.|+|. |+++.+.+ -..+++|++||..+|.+...
T Consensus 645 --n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p~~g~LyVad~~~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 645 --NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-PVNEKVYIAMAGQHQIWEYNISDGVTRVF 720 (1057)
T ss_pred --CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-cCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 3789999987764 5555321 0122578887 54555544 56899999999988876432
Q ss_pred c--------cc------CCCceEEEEEcCCCc-EEEEEc-CCeEEEEeCC-CcEEEEecc--------------CcCC--
Q 016446 224 S--------RT------EFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GELVTSFED--------------HLLW-- 270 (389)
Q Consensus 224 l--------~g------h~~~v~sv~fspdg~-~laS~s-D~tIklWd~~-G~~l~tl~g--------------h~~~-- 270 (389)
. .+ ....++.++|+|||+ ++++.+ +++|++||++ |+.. .+.+ +.+.
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecccccCcccccccCCCCchh
Confidence 1 11 123567899999998 555666 8999999996 5421 1110 0000
Q ss_pred -cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 271 -HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 271 -~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
.....-..|+|+|||+++++-+. +++|++||..++++. ++-|.-. ..+.+|.
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~-----------N~rIrviD~~tg~v~-tiaG~G~-----~G~~dG~---------- 852 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSY-----------NHKIKKLDPATKRVT-TLAGTGK-----AGFKDGK---------- 852 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECC-----------CCEEEEEECCCCeEE-EEeccCC-----cCCCCCc----------
Confidence 00000158999999998887654 489999998877765 4444220 0011110
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
...+.+.....|+++|||+.+++-+.+++||+||.
T Consensus 853 -----~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 853 -----ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred -----ccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 11223356789999999999999999999999973
No 217
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.48 E-value=2.5e-10 Score=114.40 Aligned_cols=273 Identities=15% Similarity=0.093 Sum_probs=170.0
Q ss_pred EEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCC
Q 016446 9 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 88 (389)
Q Consensus 9 i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~ 88 (389)
++..+++|.+++.+|.+..+|..+|+.+-..+... ....+++. ++..++. +..+ ..+..+|..+|+.
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v----~~~~------g~l~ald~~tG~~ 127 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVGA--DGGLVFV----GTEK------GEVIALDAEDGKE 127 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceEE--cCCEEEE----EcCC------CEEEEEECCCCcE
Confidence 45558899999999999999998999887666542 22233333 4566655 3345 5666677788887
Q ss_pred CCcceeEeeecccCcee-EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC-CcEE------EEEEcCCceEEEEec
Q 016446 89 DSGFALFESESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQ------EIKISPGIMLLIFNR 160 (389)
Q Consensus 89 ~~~~~l~~~~~~~~~~~-v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~-~~V~------~vafS~g~~la~~~~ 160 (389)
+|.....+.+.+ .... ++++ ..++.|+.+..||+++|+.+..... .... +.++. +..+..+.
T Consensus 128 -----~W~~~~~~~~~~~p~v~--~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~- 197 (377)
T TIGR03300 128 -----LWRAKLSSEVLSPPLVA--NGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVGF- 197 (377)
T ss_pred -----eeeeccCceeecCCEEE--CCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEEC-
Confidence 565332221111 1221 4544 4467799999999999999877652 2221 11222 33454443
Q ss_pred CCCCeeEEEEEcCCCeEEEEEeecCC-------ceeEEEEEe-cCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceE
Q 016446 161 SSSHVPLKILSIEDGTVLKVFYHLLH-------RNKKVDFIE-QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS 232 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~~~~~-------~~~~v~f~~-~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~ 232 (389)
.++.+.-+|+++|+.+.+...... +...+...+ ..++.+.+++.++.+..+|.++|+.+-..+... ..
T Consensus 198 --~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~ 273 (377)
T TIGR03300 198 --AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQ 273 (377)
T ss_pred --CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--cc
Confidence 346899999999998876542110 000111110 136788888899999999999999876544211 11
Q ss_pred EEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 233 AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 233 sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
..+. .++++++...||.+..+|.. |+.+-..+.-.... ..+.++ .|.+|..++. ||.|.++
T Consensus 274 ~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~----~ssp~i--~g~~l~~~~~-----------~G~l~~~ 335 (377)
T TIGR03300 274 GPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ----LTAPAV--VGGYLVVGDF-----------EGYLHWL 335 (377)
T ss_pred CceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCc----cccCEE--ECCEEEEEeC-----------CCEEEEE
Confidence 1221 24444444449999999996 98876543211110 122222 4667777765 4999999
Q ss_pred eCCCCeEEEEecCCC
Q 016446 312 SILTGKCLAKINATN 326 (389)
Q Consensus 312 d~~tg~~l~tl~gH~ 326 (389)
|..+|+.+.+++.+.
T Consensus 336 d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 336 SREDGSFVARLKTDG 350 (377)
T ss_pred ECCCCCEEEEEEcCC
Confidence 999999999998665
No 218
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=6.7e-12 Score=135.78 Aligned_cols=236 Identities=18% Similarity=0.224 Sum_probs=168.8
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC-----CcEEEEEEc---CCceEEEEecCCCCeeEEEEEc-C
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKIS---PGIMLLIFNRSSSHVPLKILSI-E 173 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~-----~~V~~vafS---~g~~la~~~~~s~d~tiklWd~-~ 173 (389)
+..+.|+ |=...++.+.....|++||-+.++++..++. ..|.++.+= |..+|+++ +.|+.||||+- .
T Consensus 1067 pk~~~~h-pf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLta---s~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1067 PKTLKFH-PFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTA---SSDGVIRIWKDYA 1142 (1387)
T ss_pred Cceeeec-CCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeee---ccCceEEEecccc
Confidence 5668887 6677888888888999999999999887762 478888776 35566665 55689999963 2
Q ss_pred CC----eEEEEE---eecCCc----eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCceEEEEE-cCCC
Q 016446 174 DG----TVLKVF---YHLLHR----NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIF-LYEN 240 (389)
Q Consensus 174 tG----~~l~tl---~~~~~~----~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~v~sv~f-spdg 240 (389)
++ +++.-. .++... -.-++|. +..++|+++++=..|||||...-.+++-+ .+-...|+++.- .+.|
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq-Q~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ-QQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehh-hhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 32 222222 222111 1334443 45678999988999999999877766654 444456666633 4668
Q ss_pred cEEEEEc-CCeEEEEeCC-C---cEEEEeccCcCCcCCCCeeEEEECCCCCE-EEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 241 QLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 241 ~~laS~s-D~tIklWd~~-G---~~l~tl~gh~~~~~~~~v~sv~fSpdG~~-laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
.++|.|- ||.||++|.+ . .++...+.|+.+.+ |..+.|-+.|-- |+|||.| |.|++||++
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~---Iv~~slq~~G~~elvSgs~~-----------G~I~~~DlR 1287 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP---IVHLSLQRQGLGELVSGSQD-----------GDIQLLDLR 1287 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCccc---ceeEEeecCCCcceeeeccC-----------CeEEEEecc
Confidence 8999997 9999999985 2 36888899998743 688899887766 9998764 999999997
Q ss_pred CCeEEEE--ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 315 TGKCLAK--INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 315 tg~~l~t--l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
....... +..|-. -| ..++++..+++..+||||+. +.|+||+.
T Consensus 1288 ~~~~e~~~~iv~~~~------------yG-------------------s~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWE------------YG-------------------SALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred cCcccccceeeeccc------------cC-------------------ccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 5322222 222220 00 25899999999999999999 99999973
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=9.9e-11 Score=118.41 Aligned_cols=288 Identities=9% Similarity=0.023 Sum_probs=178.0
Q ss_pred EEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccC
Q 016446 9 IVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 86 (389)
Q Consensus 9 i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g 86 (389)
+.|+ |.++.+.++||.+.++|+.+++.++++... ..-+++++||||++|+.+.. .+ .++.+.|.++.
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~---~~------~~v~v~D~~tl 110 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANY---EP------GTVSVIDAETL 110 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEE---ET------TEEEEEETTT-
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEec---CC------CceeEeccccc
Confidence 4556 788999999999999999999999999986 45789999999999988643 23 56777777776
Q ss_pred CCCCcceeEeee---cccCceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeEE--EEec-CCcEEEEEEc-CCceEEEE
Q 016446 87 KPDSGFALFESE---SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTML--YSIS-DKHVQEIKIS-PGIMLLIF 158 (389)
Q Consensus 87 ~~~~~~~l~~~~---~~~~~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l--~tl~-~~~V~~vafS-~g~~la~~ 158 (389)
++....+.-... ....+.+|..+ |... ++++-=.-+.|-+=|..+.+.+ ..+. +..-.+..|+ ++.+++++
T Consensus 111 e~v~~I~~~~~~~~~~~~Rv~aIv~s-~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 111 EPVKTIPTGGMPVDGPESRVAAIVAS-PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp -EEEEEE--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEE
T ss_pred cceeecccccccccccCCCceeEEec-CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeec
Confidence 652211111000 01123356676 6666 4444433355555576665533 3444 5678889999 57777776
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEee-cCCce-eEEE---------EEecC-CCeEEEEeCCCcEEEEECCCCeEEEEccc
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFYH-LLHRN-KKVD---------FIEQF-NEKLLVKQENENLQILDVRNAELMEVSRT 226 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~~-~~~~~-~~v~---------f~~~~-~~~l~~~s~D~tIklWd~~tg~~~~~l~g 226 (389)
...+ ..|-++|+++++....+.. ...+- .-.. |.... +...++.-....+.+||..+.+.++++..
T Consensus 190 ~~~s--n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 190 ANGS--NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp EGGG--TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred cccc--ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence 5443 5899999999998887642 11111 1111 11111 11221222334666899999999999887
Q ss_pred CCCceEEEEEcCCCcEEEEE---c--CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 016446 227 EFMTPSAFIFLYENQLFLTF---R--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~---s--D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~ 300 (389)
.... .-+.-+||++++... + .++|.++|.+ -+.+.++...... .+..+.|+|||+++-.+..+
T Consensus 268 ~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~----~~~h~ef~~dG~~v~vS~~~------ 336 (369)
T PF02239_consen 268 QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK----RVVHMEFNPDGKEVWVSVWD------ 336 (369)
T ss_dssp SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------EEEEEE-TTSSEEEEEEE-------
T ss_pred CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC----cEeccEECCCCCEEEEEEec------
Confidence 7666 566779999999988 3 5799999997 7888888744331 15789999999988777765
Q ss_pred cCCCCCeEEEEeCCCCeEEEEecC
Q 016446 301 MEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 301 ~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
.++.|.++|..|.++++.+..
T Consensus 337 ---~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 337 ---GNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp ----TTEEEEEETTTTEEEEEEE-
T ss_pred ---CCCEEEEEECCCcEEEEEEEe
Confidence 245999999999999999873
No 220
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=6.2e-11 Score=111.55 Aligned_cols=240 Identities=11% Similarity=0.181 Sum_probs=162.0
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCC--CCcceeEe-eecccCceeEEEecCCCeEEEEecC
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP--DSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQ 121 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~--~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~ 121 (389)
+.|.+-++||-+++|+.++.| .++.+..+ -.+..|.. -...+++. +.+-+.+++++|. ...|.||+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~-----G~iav~sl--~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g- 79 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLF-----GDIAVLSL--KSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG- 79 (325)
T ss_pred HHHHHHhhCCcceEEEEecCC-----CeEEEEEe--hhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-
Confidence 456677899999998885433 33333322 22222211 11123555 5677778899996 34777776
Q ss_pred CCeEEEEeCCCCe------EEEEec----C-----CcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEEEEEeec
Q 016446 122 DSIYKVFDLKNYT------MLYSIS----D-----KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 184 (389)
Q Consensus 122 D~tiklWdl~~g~------~l~tl~----~-----~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~ 184 (389)
||.||=|--+.-. .+.... . -.|+++-.-| +..|.+ +.|+.+.-||+++|+..++++||
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A----gGD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA----GGDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe----cCCeEEEEEEecCCEEEEEEcCC
Confidence 5999998754322 122221 1 2566666664 555543 35789999999999999999999
Q ss_pred CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc---------C-CCceEEEEEcCCCcEEEEEcCCeEEEE
Q 016446 185 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---------E-FMTPSAFIFLYENQLFLTFRNRTVAVW 254 (389)
Q Consensus 185 ~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g---------h-~~~v~sv~fspdg~~laS~sD~tIklW 254 (389)
++-+.+|.-- .....+++|++|||+||||.+|++++++++. | ..+|-+++- +...|+.|.-..+-||
T Consensus 156 tDYvH~vv~R-~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslw 232 (325)
T KOG0649|consen 156 TDYVHSVVGR-NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLW 232 (325)
T ss_pred cceeeeeeec-ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEE
Confidence 9999999973 3468999999999999999999999998743 2 224555544 4556888877788899
Q ss_pred eCC-CcEEEEec--cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 255 NFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 255 d~~-G~~l~tl~--gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
++. -++.++|. +| |..|.| +.+.+++++.- +.|.-|.+ .|.+-...++
T Consensus 233 hLrsse~t~vfpipa~--------v~~v~F--~~d~vl~~G~g-----------~~v~~~~l-~Gvl~a~ip~ 283 (325)
T KOG0649|consen 233 HLRSSESTCVFPIPAR--------VHLVDF--VDDCVLIGGEG-----------NHVQSYTL-NGVLQANIPV 283 (325)
T ss_pred eccCCCceEEEecccc--------eeEeee--ecceEEEeccc-----------cceeeeee-ccEEEEeccC
Confidence 996 77766664 44 567777 44556666532 68989985 4777666654
No 221
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=1.5e-12 Score=140.70 Aligned_cols=192 Identities=10% Similarity=0.066 Sum_probs=150.4
Q ss_pred CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce--eEEEEE--ecCCCeEEEEeCCCcEEEEECC
Q 016446 142 KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFI--EQFNEKLLVKQENENLQILDVR 216 (389)
Q Consensus 142 ~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~--~~v~f~--~~~~~~l~~~s~D~tIklWd~~ 216 (389)
+||..-.+. ...++|..... +.+-|||...+..+..+..- ... ...... .+..=++++|+.=+.|-+|+..
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~---ns~~i~d~~~~~~~~~i~~~-er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSR---NSLLIRDSKNSSVLSKIQSD-ERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred ccccccchhhhcceEEEEEcC---ceEEEEecccCceehhcCCC-ceEEEEeEEEEeccCcEEEEEeccccccEEEEecc
Confidence 566666666 66666665433 67889998887777665521 111 111111 1223467778888999999987
Q ss_pred CCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEE-EeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 217 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 217 tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~-tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
--+.-..+.||.+.+.++.+|-||++++|.| |++||+|+++ ++.+. +.=||... ||.+.|.|+ +|++++.
T Consensus 164 ~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR-----vw~~~~~~n--~i~t~ge 236 (967)
T KOG0974|consen 164 EDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR-----VWACCFLPN--RIITVGE 236 (967)
T ss_pred ccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce-----eEEEEeccc--eeEEecc
Confidence 4333336899999999999999999999999 9999999996 77655 77799987 899999999 9999876
Q ss_pred CCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC
Q 016446 294 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 373 (389)
Q Consensus 294 D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~ 373 (389)
| -|.|+|+. .|+.+.++.+|.. +.||.++.+++-.
T Consensus 237 d-----------ctcrvW~~-~~~~l~~y~~h~g---------------------------------~~iw~~~~~~~~~ 271 (967)
T KOG0974|consen 237 D-----------CTCRVWGV-NGTQLEVYDEHSG---------------------------------KGIWKIAVPIGVI 271 (967)
T ss_pred c-----------eEEEEEec-ccceehhhhhhhh---------------------------------cceeEEEEcCCce
Confidence 5 89999984 5888889999984 6899999999999
Q ss_pred EEEEecCCCcEEEccC
Q 016446 374 EIYTGNRHGLVHVWSN 389 (389)
Q Consensus 374 ~LaSgs~D~tIrlW~~ 389 (389)
+++|++.|+++|+|+.
T Consensus 272 ~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEEeeccCcchhhhhh
Confidence 9999999999999973
No 222
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=1.7e-09 Score=108.01 Aligned_cols=278 Identities=15% Similarity=0.167 Sum_probs=176.7
Q ss_pred EEEEEecC----ceEEEEec--ccceee--eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc-
Q 016446 15 IVFALAHS----GVCAAFSR--ETNRRI--CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR- 85 (389)
Q Consensus 15 ~~a~~~~~----gtiklW~~--~tg~~l--~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~- 85 (389)
++.++++. +.|..+++ ++|++- ..+.. ...-.-++++|+++.|-++...+..+ ..+..+.+..
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~------g~v~~~~i~~~ 72 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDS------GGVSSYRIDPD 72 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTT------TEEEEEEEETT
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCC------CCEEEEEECCC
Confidence 45667777 78999887 556543 33322 23445689999999998876432123 3444444432
Q ss_pred -CCCCCcceeEeee-cccCceeEEEecCCCeEEEEec-CCCeEEEEeCCC-CeEEE---Eec------------CCcEEE
Q 016446 86 -GKPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKN-YTMLY---SIS------------DKHVQE 146 (389)
Q Consensus 86 -g~~~~~~~l~~~~-~~~~~~~v~Fs~pdG~~Las~s-~D~tiklWdl~~-g~~l~---tl~------------~~~V~~ 146 (389)
|++. .+-... ....|..++++ |||++|..+. .+++|-++++.. |++.. .+. .....+
T Consensus 73 ~g~L~---~~~~~~~~g~~p~~i~~~-~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 73 TGTLT---LLNSVPSGGSSPCHIAVD-PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp TTEEE---EEEEEEESSSCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred cceeE---EeeeeccCCCCcEEEEEe-cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 5541 121111 33446679998 8999988887 499999999975 66432 221 246889
Q ss_pred EEEc-CCceEEEEecCCCCeeEEEEEcCCCe--EE--EEEee-cCCceeEEEEEecCCCeEEEE-eCCCcEEEEECC--C
Q 016446 147 IKIS-PGIMLLIFNRSSSHVPLKILSIEDGT--VL--KVFYH-LLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--N 217 (389)
Q Consensus 147 vafS-~g~~la~~~~~s~d~tiklWd~~tG~--~l--~tl~~-~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~--t 217 (389)
+.|+ +|+++++..-+. ..|.++++..+. +. ..+.. ....=+.++|+ |++.++... ..+++|-++++. +
T Consensus 149 v~~~pdg~~v~v~dlG~--D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGA--DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSD 225 (345)
T ss_dssp EEE-TTSSEEEEEETTT--TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EEECCCCCEEEEEecCC--CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc-CCcCEEEEecCCCCcEEEEeecccC
Confidence 9999 578887775443 478888886654 32 23331 22333789998 677777665 589999999998 5
Q ss_pred CeE--EEEccc------CCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC---CcE--EEEeccCcCCcCCCCeeEEEEC
Q 016446 218 AEL--MEVSRT------EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL--VTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 218 g~~--~~~l~g------h~~~v~sv~fspdg~~laS~s--D~tIklWd~~---G~~--l~tl~gh~~~~~~~~v~sv~fS 282 (389)
|+. +++... .......++++|||++|-.+. .++|-+++++ |++ +..+.-.... -+.++|+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-----Pr~~~~s 300 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-----PRHFAFS 300 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-----EEEEEE-
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-----ccEEEEe
Confidence 543 332221 123688999999999877764 8899999983 443 2333211111 2799999
Q ss_pred CCCCEEEEEecCCCcccccCCCCCeEEEEeC--CCCeEEEEe
Q 016446 283 SDQDLIISYCKAEPEDQWMEGSAGSINVSSI--LTGKCLAKI 322 (389)
Q Consensus 283 pdG~~laS~s~D~~~~~~~~s~D~tIklWd~--~tg~~l~tl 322 (389)
|||++|+.++.+ +++|.++++ .+|++...-
T Consensus 301 ~~g~~l~Va~~~----------s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 301 PDGRYLYVANQD----------SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTSSEEEEEETT----------TTEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEecC----------CCeEEEEEEeCCCCcEEEec
Confidence 999999999876 488999966 678765443
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=2.4e-13 Score=136.63 Aligned_cols=225 Identities=18% Similarity=0.193 Sum_probs=178.3
Q ss_pred EEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEE
Q 016446 48 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 127 (389)
Q Consensus 48 ~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tikl 127 (389)
..+-|+.+|..|+. |+.. ..+-..|..++++ .|......-+.+|.|- -+.+++|- .+.+-+.|
T Consensus 133 Y~~~ytrnGrhlll----gGrK------GHlAa~Dw~t~~L-----~~Ei~v~Etv~Dv~~L-Hneq~~AV-AQK~y~yv 195 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLL----GGRK------GHLAAFDWVTKKL-----HFEINVMETVRDVTFL-HNEQFFAV-AQKKYVYV 195 (545)
T ss_pred eeeeecCCccEEEe----cCCc------cceeeeeccccee-----eeeeehhhhhhhhhhh-cchHHHHh-hhhceEEE
Confidence 67899999999888 6666 5666678888887 3333333345678997 68888885 57788889
Q ss_pred EeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeC
Q 016446 128 FDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE 206 (389)
Q Consensus 128 Wdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~ 206 (389)
+| ..|..++-+. ...|..+.|=|-.+|++++ +.-+.++--|+.+|+++..+..-.+.+....-+ |-+..+-.|..
T Consensus 196 YD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~--~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~NaVih~Ghs 271 (545)
T KOG1272|consen 196 YD-NNGTELHCLKRHIRVARLEFLPYHFLLVAA--SEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNAVIHLGHS 271 (545)
T ss_pred ec-CCCcEEeehhhcCchhhhcccchhheeeec--ccCCceEEEeechhhhhHHHHccCCccchhhcC-CccceEEEcCC
Confidence 99 6899888887 4789999999988887764 344799999999999998887555666666655 55777777889
Q ss_pred CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 207 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 207 D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
.|||-||...+.+++-.+--|..+|.+||+.|+|+++||.+ |..+||||+. -..+.++.- +++ ...++||--
T Consensus 272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~---a~~ls~Sqk 345 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHP---ASNLSLSQK 345 (545)
T ss_pred CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCC---ccccccccc
Confidence 99999999999999888889999999999999999999999 9999999997 344444432 222 578999988
Q ss_pred CCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 285 QDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 285 G~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
|-+.++.+ .-|.||-
T Consensus 346 glLA~~~G-------------~~v~iw~ 360 (545)
T KOG1272|consen 346 GLLALSYG-------------DHVQIWK 360 (545)
T ss_pred cceeeecC-------------Ceeeeeh
Confidence 88777654 3688894
No 224
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.2e-12 Score=132.18 Aligned_cols=285 Identities=13% Similarity=0.190 Sum_probs=205.0
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCcee---EEEecCCC
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF---VEFDDVNG 113 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~---v~Fs~pdG 113 (389)
.-|++|+ ..|+.|-|+..|..|+| +++| +++-+||...++... -|...|...++. +-|+ +-
T Consensus 136 ~kL~~H~-GcVntV~FN~~Gd~l~S----gSDD------~~vv~WdW~~~~~~l---~f~SGH~~NvfQaKFiP~s--~d 199 (559)
T KOG1334|consen 136 KKLNKHK-GCVNTVHFNQRGDVLAS----GSDD------LQVVVWDWVSGSPKL---SFESGHCNNVFQAKFIPFS--GD 199 (559)
T ss_pred hcccCCC-CccceeeecccCceeec----cCcc------ceEEeehhhccCccc---ccccccccchhhhhccCCC--CC
Confidence 4578876 99999999999999999 7799 999999998887621 222233333333 4443 45
Q ss_pred eEEEEecCCCeEEEEeC-CCCeEEEEe----cCCcEEEEEEcCC--ceEEEEecCCCCeeEEEEEcCCCeEEEEEe---e
Q 016446 114 KVLTYSAQDSIYKVFDL-KNYTMLYSI----SDKHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFY---H 183 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl-~~g~~l~tl----~~~~V~~vafS~g--~~la~~~~~s~d~tiklWd~~tG~~l~tl~---~ 183 (389)
+.|++++.||.||+=.+ .+|.+..+- |.+.|.-+|.-|+ ..|.+ ++.|.-++-.|+.++..-.++. .
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S---~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLS---CGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccc---cccccceeeeeeccCCccceeeeecc
Confidence 78999999999999885 355554232 2467777776642 23334 4667888888888876555443 2
Q ss_pred cCC---ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE------EEEc------ccCCCceEEEEEc-CCCcEEEEEc
Q 016446 184 LLH---RNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL------MEVS------RTEFMTPSAFIFL-YENQLFLTFR 247 (389)
Q Consensus 184 ~~~---~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~------~~~l------~gh~~~v~sv~fs-pdg~~laS~s 247 (389)
+.. ....++..|.....++.++.|.-+|+||.+.-.. +..+ ....-.|..++|+ ..+.+|||-+
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 222 2356666544345778899999999999874211 1222 1223468999999 5566666666
Q ss_pred CCeEEEEeCC---C----------cEEEE-eccCcCCcCCCCeeEEE-ECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 248 NRTVAVWNFR---G----------ELVTS-FEDHLLWHPDCNTNNIY-ITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 248 D~tIklWd~~---G----------~~l~t-l~gh~~~~~~~~v~sv~-fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
|-.|-|.+.+ | .+++. ++||.+.. .|..|- |-|...|++|||. + |-|-||+
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~---TVKgVNFfGPrsEyVvSGSD-C----------GhIFiW~ 422 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSR---TVKGVNFFGPRSEYVVSGSD-C----------GHIFIWD 422 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhccccccc---ccceeeeccCccceEEecCc-c----------ceEEEEe
Confidence 9999999753 5 34444 88998753 366664 6899999999874 2 8999999
Q ss_pred CCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 313 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 313 ~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
=.+|+.|+-|.|-. ..|++|-=+|--..|||.+-|.-||||-
T Consensus 423 K~t~eii~~MegDr----------------------------------~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 423 KKTGEIIRFMEGDR----------------------------------HVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred cchhHHHHHhhccc----------------------------------ceEeccCCCCCCchhhccCCccceeeec
Confidence 99999999999865 3899999999999999999999999994
No 225
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.43 E-value=5e-12 Score=128.96 Aligned_cols=199 Identities=11% Similarity=0.126 Sum_probs=152.0
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
.++-++.||.+.+=+ +.|+.-... |...|.+-+++ +|.-|+++ ++|+.||+|. ++|-+.-++......++++
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~---GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTA---GEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeee---cCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 566678888887777 466644444 45689999999 68878775 6779999999 7888877777666889999
Q ss_pred EEEecCCCeEEEEeCC-CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcC
Q 016446 192 DFIEQFNEKLLVKQEN-ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL 269 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D-~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~ 269 (389)
++. |+...++-...+ -.|| -++-...+-..+.|.+-|-++.|+|...+++||+ |-..|+||..|..|.+-..|..
T Consensus 152 ~W~-p~S~~vl~c~g~h~~IK--pL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 152 RWA-PNSNSIVFCQGGHISIK--PLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEY 228 (737)
T ss_pred EEC-CCCCceEEecCCeEEEe--ecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhcc
Confidence 997 555565554433 3334 3333333444589999999999999999999999 9999999999999888888887
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
+ |.+|+|.|| +..+-+|. +|.|+ ..-. .
T Consensus 229 ~-----ITSva~npd-~~~~v~S~------------nt~R~------------~~p~-------------~--------- 256 (737)
T KOG1524|consen 229 A-----ITSVAFNPE-KDYLLWSY------------NTARF------------SSPR-------------V--------- 256 (737)
T ss_pred c-----eeeeeeccc-cceeeeee------------eeeee------------cCCC-------------c---------
Confidence 7 799999999 55555654 57772 2111 1
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEecCCCcE
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 384 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tI 384 (389)
..|..+++||||..++.|...|.+
T Consensus 257 -----------GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 257 -----------GSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred -----------cceEEEEEcCCCceeeccccCceE
Confidence 379999999999999999988865
No 226
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.43 E-value=1.8e-11 Score=128.93 Aligned_cols=261 Identities=12% Similarity=0.065 Sum_probs=172.3
Q ss_pred ceEEEEecccc-eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc--eeEeeec
Q 016446 23 GVCAAFSRETN-RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF--ALFESES 99 (389)
Q Consensus 23 gtiklW~~~tg-~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~--~l~~~~~ 99 (389)
+.+-+|++..- ++=..+. -...|.++.|+|....|+.+ |.++ .++-+||++.+...... ..-.+.+
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~--~~s~v~~~~f~p~~p~ll~g---G~y~------GqV~lWD~~~~~~~~~s~ls~~~~sh 290 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE--SPSEVTCLKFCPFDPNLLAG---GCYN------GQVVLWDLRKGSDTPPSGLSALEVSH 290 (555)
T ss_pred ceEEEEecCCCCCceEEEe--cCCceeEEEeccCCcceEEe---eccC------ceEEEEEccCCCCCCCcccccccccC
Confidence 57889998643 3333333 34789999999997766664 6688 99999999777642111 1111234
Q ss_pred ccCceeEEEec-CCCeEEEEecCCCeEEEEeCCCCe------EEEEec--------CCcEEEEEEcC--CceEEEEecCC
Q 016446 100 LKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYT------MLYSIS--------DKHVQEIKISP--GIMLLIFNRSS 162 (389)
Q Consensus 100 ~~~~~~v~Fs~-pdG~~Las~s~D~tiklWdl~~g~------~l~tl~--------~~~V~~vafS~--g~~la~~~~~s 162 (389)
...+..+.+-. +.+.-++|+|.||.|+.|++..-. ++-... ...+.+++|.+ -..++++...
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~- 369 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE- 369 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCC-
Confidence 44444444431 222458899999999999865322 111111 13688899983 3344455333
Q ss_pred CCeeEEE---EEcCCCe-----EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEEcccCCCceEE
Q 016446 163 SHVPLKI---LSIEDGT-----VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSA 233 (389)
Q Consensus 163 ~d~tikl---Wd~~tG~-----~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~-tg~~~~~l~gh~~~v~s 233 (389)
|.|.- ++...+. .+.++..|.+.+..|.++ |+...+..++.|-++|||.-. .-.++-.+.-+.+.|.+
T Consensus 370 --G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~n-PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 370 --GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRN-PFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred --cEEEEEeccCCcccccccccccccccccCcceEeeecC-CCccceeeeeccceeEeccccCCCCcchhhhhccceeee
Confidence 44433 4443332 133555677889999999 455444444449999999987 56667777888889999
Q ss_pred EEEcCCCc-EEEEEc-CCeEEEEeCC-C--cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 234 FIFLYENQ-LFLTFR-NRTVAVWNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 234 v~fspdg~-~laS~s-D~tIklWd~~-G--~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
++|||-.- .|+++. ||.|.|||+. - +.+.+..-+... .+-+.++|+|+.||.|.. -|+|
T Consensus 447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~-----l~~~~~s~~g~~lavGd~-----------~G~~ 510 (555)
T KOG1587|consen 447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPA-----LTRVRWSPNGKLLAVGDA-----------NGTT 510 (555)
T ss_pred eEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccc-----cceeecCCCCcEEEEecC-----------CCcE
Confidence 99999774 566777 9999999984 2 334444433222 577889999999999864 4999
Q ss_pred EEEeCC
Q 016446 309 NVSSIL 314 (389)
Q Consensus 309 klWd~~ 314 (389)
.++++.
T Consensus 511 ~~~~l~ 516 (555)
T KOG1587|consen 511 HILKLS 516 (555)
T ss_pred EEEEcC
Confidence 999985
No 227
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=7e-12 Score=122.25 Aligned_cols=181 Identities=13% Similarity=0.170 Sum_probs=138.1
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec-CCCeEEEEeCCCcEEEEECCCCeE--EEEcccCC-C
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAEL--MEVSRTEF-M 229 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~-~~~~l~~~s~D~tIklWd~~tg~~--~~~l~gh~-~ 229 (389)
.+|++-+. ++|||+|..||+.+..|++|...++.|.|+.- .+..+.+++.||+||+||+++... +....+|. .
T Consensus 42 ~vav~lSn---gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 42 AVAVSLSN---GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eEEEEecC---CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 34454434 68999999999999999999999999999843 356788889999999999997543 34445565 4
Q ss_pred ceEEEEEcCCCcEEEEEc-----CCeEEEEeCC--CcEEEEec-cCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcccc
Q 016446 230 TPSAFIFLYENQLFLTFR-----NRTVAVWNFR--GELVTSFE-DHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQW 300 (389)
Q Consensus 230 ~v~sv~fspdg~~laS~s-----D~tIklWd~~--G~~l~tl~-gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~ 300 (389)
+-.+++..-.+++++.|. |-.|-+||++ -++++.|. .|.+- |..|.|.| |-.+|+|||-|
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD-----VT~lrFHP~~pnlLlSGSvD------ 187 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD-----VTQLRFHPSDPNLLLSGSVD------ 187 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc-----ceeEEecCCCCCeEEeeccc------
Confidence 556666676889999883 6789999996 44455544 56654 89999999 67899998764
Q ss_pred cCCCCCeEEEEeCCCCe----EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-CEE
Q 016446 301 MEGSAGSINVSSILTGK----CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEI 375 (389)
Q Consensus 301 ~~s~D~tIklWd~~tg~----~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~L 375 (389)
|.|.|+|++.-. ++++++ |. ..|..+.|..++ +.|
T Consensus 188 -----GLvnlfD~~~d~EeDaL~~viN-~~----------------------------------sSI~~igw~~~~ykrI 227 (376)
T KOG1188|consen 188 -----GLVNLFDTKKDNEEDALLHVIN-HG----------------------------------SSIHLIGWLSKKYKRI 227 (376)
T ss_pred -----ceEEeeecCCCcchhhHHHhhc-cc----------------------------------ceeeeeeeecCCcceE
Confidence 999999986432 222222 11 469999999999 559
Q ss_pred EEecCCCcEEEcc
Q 016446 376 YTGNRHGLVHVWS 388 (389)
Q Consensus 376 aSgs~D~tIrlW~ 388 (389)
.+=+.+++..+|+
T Consensus 228 ~clTH~Etf~~~e 240 (376)
T KOG1188|consen 228 MCLTHMETFAIYE 240 (376)
T ss_pred EEEEccCceeEEE
Confidence 9999999999997
No 228
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=3.8e-09 Score=106.12 Aligned_cols=275 Identities=12% Similarity=0.088 Sum_probs=168.1
Q ss_pred ceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEee---ec
Q 016446 23 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES---ES 99 (389)
Q Consensus 23 gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~---~~ 99 (389)
++|.+.|.++++.+.++.... ..- -+ +||||+.|..+..+-+.--..-.-..+.++|+++++......+=.. ..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-LPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-CCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 899999999999999998764 332 34 9999999988765211111111116888999999887322221000 01
Q ss_pred ccCceeEEEecCCCeEEEEec--CCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCe
Q 016446 100 LKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s--~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
...+..++|| |||++|.-.. .+..|-+.|+++++.+.++. .+...-+..++....+.+ .++. ..++=.=.+|+
T Consensus 104 ~~~~~~~~ls-~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~-~Dg~--~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLT-PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHC-RDGS--LAKVGYGTKGN 179 (352)
T ss_pred cCccceEEEC-CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEe-ecCc--eEEEEecCCCc
Confidence 2334478998 9999877444 48999999999999988876 232333333322222111 1211 11111112333
Q ss_pred EE-EEEe-ecC--Cc--eeEEEEEecCCCeEEEEeCCCcEEEEECC-----CCeEEEEccc-------CCCceEEEEEcC
Q 016446 177 VL-KVFY-HLL--HR--NKKVDFIEQFNEKLLVKQENENLQILDVR-----NAELMEVSRT-------EFMTPSAFIFLY 238 (389)
Q Consensus 177 ~l-~tl~-~~~--~~--~~~v~f~~~~~~~l~~~s~D~tIklWd~~-----tg~~~~~l~g-------h~~~v~sv~fsp 238 (389)
.. ++.+ .|. .. .+. .|.+.++..+-.+.+ |+|.+-|+. ..+...++.. ......-++++|
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred eEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 21 1111 111 00 011 444335544444555 999999953 3444444321 223344499999
Q ss_pred CCcEEEEEc---C--------CeEEEEeCC-CcEEEEec-cCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCC
Q 016446 239 ENQLFLTFR---N--------RTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 239 dg~~laS~s---D--------~tIklWd~~-G~~l~tl~-gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~ 304 (389)
||+++-... . +.|-+.|.. ++.+..+. |+. ++.|+|||||+ +|...+..
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-------~~~iavS~Dgkp~lyvtn~~---------- 320 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE-------IDSINVSQDAKPLLYALSTG---------- 320 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc-------eeeEEECCCCCeEEEEeCCC----------
Confidence 988776632 2 689999996 89888776 442 58999999999 77776542
Q ss_pred CCeEEEEeCCCCeEEEEec
Q 016446 305 AGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl~ 323 (389)
+++|-+.|+.+++.++++.
T Consensus 321 s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 321 DKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCcEEEEECcCCeEEeeec
Confidence 5899999999999999983
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.39 E-value=3.4e-12 Score=130.19 Aligned_cols=125 Identities=13% Similarity=0.177 Sum_probs=96.6
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECCC--------------CeEEEEc--------------ccCCCceEEEEEc
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVRN--------------AELMEVS--------------RTEFMTPSAFIFL 237 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t--------------g~~~~~l--------------~gh~~~v~sv~fs 237 (389)
..+..+.+.+-++..++++-.++.+.++|..- +....++ .--...|..++||
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 45678888866677888888999999996532 1111111 1123478899999
Q ss_pred CCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 238 YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 238 pdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
|||++||+.+ ||.+||.|+. -+++..++---+ ...+|++||||||||+|++| .-|-+|.+..
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-----GLLCvcWSPDGKyIvtGGED-----------DLVtVwSf~e 363 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-----GLLCVCWSPDGKYIVTGGED-----------DLVTVWSFEE 363 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-----ceEEEEEcCCccEEEecCCc-----------ceEEEEEecc
Confidence 9999999999 9999999998 566555542222 26899999999999998765 7999999999
Q ss_pred CeEEEEecCCC
Q 016446 316 GKCLAKINATN 326 (389)
Q Consensus 316 g~~l~tl~gH~ 326 (389)
++.++-=+||.
T Consensus 364 rRVVARGqGHk 374 (636)
T KOG2394|consen 364 RRVVARGQGHK 374 (636)
T ss_pred ceEEEeccccc
Confidence 99999999998
No 230
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.39 E-value=4.8e-12 Score=129.07 Aligned_cols=220 Identities=14% Similarity=0.106 Sum_probs=163.0
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEecCCcEEEEEEc-C--------CceEEEEecCCCCeeEEEEEcCC
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKHVQEIKIS-P--------GIMLLIFNRSSSHVPLKILSIED 174 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~~~~V~~vafS-~--------g~~la~~~~~s~d~tiklWd~~t 174 (389)
+|.++ .+..++-+++++..++-||+.+-+ .+..++...|...-|= + ...++.+ +.|+.+.|-+ ..
T Consensus 19 ~v~w~-~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~---s~DGkf~il~-k~ 93 (737)
T KOG1524|consen 19 CVDWS-SNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLIC---SNDGRFVILN-KS 93 (737)
T ss_pred eeccc-ccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEE---cCCceEEEec-cc
Confidence 57776 566666666666666666664433 3444443333222221 1 2355555 4457888888 68
Q ss_pred CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEE
Q 016446 175 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW 254 (389)
Q Consensus 175 G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklW 254 (389)
|+..+....|-+.+.+-.++ |+|--|++.++||.||+|.- +|-+..++.....+|++++|-|+..-++-+.-+.+-|=
T Consensus 94 ~rVE~sv~AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IK 171 (737)
T KOG1524|consen 94 ARVERSISAHAAAISSGRWS-PDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIK 171 (737)
T ss_pred chhhhhhhhhhhhhhhcccC-CCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEe
Confidence 89999999888888888888 88999999999999999986 89988888888889999999999998887763433343
Q ss_pred eC--CCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcc
Q 016446 255 NF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 332 (389)
Q Consensus 255 d~--~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~ 332 (389)
-+ +-+.+ ..+.|.+- |.++.++|...+|+||++| -.-|+|| ..|+.+.+=..|+
T Consensus 172 pL~~n~k~i-~WkAHDGi-----iL~~~W~~~s~lI~sgGED-----------~kfKvWD-~~G~~Lf~S~~~e------ 227 (737)
T KOG1524|consen 172 PLAANSKII-RWRAHDGL-----VLSLSWSTQSNIIASGGED-----------FRFKIWD-AQGANLFTSAAEE------ 227 (737)
T ss_pred eccccccee-EEeccCcE-----EEEeecCccccceeecCCc-----------eeEEeec-ccCcccccCChhc------
Confidence 44 34444 47788875 8999999999999998765 7999999 5599998888887
Q ss_pred cccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEE
Q 016446 333 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 385 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIr 385 (389)
.+|++|+|.|| +..+-|| -++.|
T Consensus 228 ----------------------------y~ITSva~npd-~~~~v~S-~nt~R 250 (737)
T KOG1524|consen 228 ----------------------------YAITSVAFNPE-KDYLLWS-YNTAR 250 (737)
T ss_pred ----------------------------cceeeeeeccc-cceeeee-eeeee
Confidence 59999999999 6666665 34444
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=9.9e-09 Score=102.52 Aligned_cols=244 Identities=16% Similarity=0.243 Sum_probs=158.1
Q ss_pred cccCceeEEEecCCCeEEEEecC----CCeEEEEeCCC--CeE--EEEec--CCcEEEEEEc-CCceEEEEecCCCCeeE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQ----DSIYKVFDLKN--YTM--LYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPL 167 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~----D~tiklWdl~~--g~~--l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~ti 167 (389)
....|..++++ |++++|-+... ++.|-.|.+.. |++ +.+.. +..-..|+++ ++.+|+++.-. +++|
T Consensus 35 ~~~~Ps~l~~~-~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~--~g~v 111 (345)
T PF10282_consen 35 EGENPSWLAVS-PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG--GGSV 111 (345)
T ss_dssp ESSSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT--TTEE
T ss_pred CCCCCceEEEE-eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc--CCeE
Confidence 34456679998 88888877765 57998888764 564 33333 4566789999 68888887544 4789
Q ss_pred EEEEcCC-CeEEEEE--ee-----------cCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCe--EEE--Ec-ccC
Q 016446 168 KILSIED-GTVLKVF--YH-----------LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAE--LME--VS-RTE 227 (389)
Q Consensus 168 klWd~~t-G~~l~tl--~~-----------~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~--~~~--~l-~gh 227 (389)
-++++.. |.+.... .. -..+...+.|. |++..+++.. ....|.++++.... +.. .+ ...
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~ 190 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP 190 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence 9999986 6655432 11 12455789998 7888888764 45589999997654 322 22 234
Q ss_pred CCceEEEEEcCCCcEEEEEc--CCeEEEEeCC---CcE--EEEeccCc-CCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 016446 228 FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL--VTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 299 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s--D~tIklWd~~---G~~--l~tl~gh~-~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~ 299 (389)
...++-++|+|||+++-... +++|-++++. |++ +++..-.. .+.....-..|++||||++|..+.+.
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~----- 265 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG----- 265 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----
T ss_pred CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----
Confidence 45688999999999886664 9999999985 432 33322110 11000124789999999999887764
Q ss_pred ccCCCCCeEEEEeC--CCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEE
Q 016446 300 WMEGSAGSINVSSI--LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 377 (389)
Q Consensus 300 ~~~s~D~tIklWd~--~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaS 377 (389)
.++|-++++ .+|++ ..+..-. +.+ ..-+.++|+|||++|+.
T Consensus 266 -----~~sI~vf~~d~~~g~l-~~~~~~~----------------------------~~G---~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 266 -----SNSISVFDLDPATGTL-TLVQTVP----------------------------TGG---KFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp -----TTEEEEEEECTTTTTE-EEEEEEE----------------------------ESS---SSEEEEEE-TTSSEEEE
T ss_pred -----CCEEEEEEEecCCCce-EEEEEEe----------------------------CCC---CCccEEEEeCCCCEEEE
Confidence 489999998 34543 2222111 000 35688999999999998
Q ss_pred ec-CCCcEEEcc
Q 016446 378 GN-RHGLVHVWS 388 (389)
Q Consensus 378 gs-~D~tIrlW~ 388 (389)
+. .+++|.+++
T Consensus 309 a~~~s~~v~vf~ 320 (345)
T PF10282_consen 309 ANQDSNTVSVFD 320 (345)
T ss_dssp EETTTTEEEEEE
T ss_pred EecCCCeEEEEE
Confidence 87 556888774
No 232
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.39 E-value=6e-11 Score=130.11 Aligned_cols=242 Identities=12% Similarity=0.096 Sum_probs=154.9
Q ss_pred cccEEEEEee---ccEEEEEecCceEEEEeccc-------ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcc
Q 016446 3 RTKVIEIVAA---RDIVFALAHSGVCAAFSRET-------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 72 (389)
Q Consensus 3 ~~~v~~i~~~---~~~~a~~~~~gtiklW~~~t-------g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~ 72 (389)
++.|..+..+ +.+++++|.|||||+|+... -++-+|.... ...+..|.+-+.|+++|.+ +.|
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~-~sr~~~vt~~~~~~~~Av~----t~D--- 1119 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPE-GSRVEKVTMCGNGDQFAVS----TKD--- 1119 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEecc-CCceEEEEeccCCCeEEEE----cCC---
Confidence 4566677777 57999999999999999642 2455555543 3789999999999999985 455
Q ss_pred eeeeeeeEeEecc--CCC-CCcce-eEeeecccC-ceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeEEEEec----CC
Q 016446 73 LKCRSTKIEYIRR--GKP-DSGFA-LFESESLKW-PGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS----DK 142 (389)
Q Consensus 73 l~~~~~~l~~i~~--g~~-~~~~~-l~~~~~~~~-~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l~tl~----~~ 142 (389)
..+.+-.+.. ++. .-.+. .-.....+. +.--+|...++. .|+.+..-+-|-.||...-.-+.+++ .+
T Consensus 1120 ---G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1120 ---GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred ---CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 4444444422 111 00000 000011111 111244433444 78888888899999976655444443 57
Q ss_pred cEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCC--CeEEEE-e-CCCcEEEEECC
Q 016446 143 HVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFN--EKLLVK-Q-ENENLQILDVR 216 (389)
Q Consensus 143 ~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~--~~l~~~-s-~D~tIklWd~~ 216 (389)
.|.+++.+| +.+++++.+. +.+-+||++=+.++..-. .+..++..|...+..+ ...+++ + ..+.|-+||++
T Consensus 1197 ~vTSi~idp~~~WlviGts~---G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSR---GQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred ceeEEEecCCceEEEEecCC---ceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 899999996 7788887544 689999999888777655 1224455555543223 555554 4 78999999999
Q ss_pred CCeEEEEcccC-------------------CCceEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 016446 217 NAELMEVSRTE-------------------FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG 258 (389)
Q Consensus 217 tg~~~~~l~gh-------------------~~~v~sv~fspdg~~laS~s-D~tIklWd~~G 258 (389)
+|.|..++..- .-......+..-+..+.+|+ |..||.||...
T Consensus 1274 ~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1274 TGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 99998887433 11122233333344555665 99999999863
No 233
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.38 E-value=5.6e-10 Score=126.35 Aligned_cols=239 Identities=15% Similarity=0.176 Sum_probs=161.0
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCc-------------ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPD-------------EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~-------------~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
+.+.++-+.++.|++++.. |+.+.++.+... +.-..|++.|+|+.|..+ +. .. +.|+
T Consensus 580 g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa--Dt-~n------~~Ir 649 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA--DT-EN------HALR 649 (1057)
T ss_pred CeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE--eC-CC------ceEE
Confidence 6678888899999999985 887776654211 124789999998876553 22 33 4556
Q ss_pred EeEeccCCCCC----ccee--Ee------eecccCceeEEEecC-CCeEEEEecCCCeEEEEeCCCCeEE-EEecC----
Q 016446 80 IEYIRRGKPDS----GFAL--FE------SESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTML-YSISD---- 141 (389)
Q Consensus 80 l~~i~~g~~~~----~~~l--~~------~~~~~~~~~v~Fs~p-dG~~Las~s~D~tiklWdl~~g~~l-~tl~~---- 141 (389)
..|...+.... +... +. ...+.+|..|+|+ | +|.+.++.+.++.|++||..++... +...+
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-PVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-cCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 55654443200 0000 00 0125578899998 6 7888899999999999999887643 11110
Q ss_pred -----------CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee---------------------cCCce
Q 016446 142 -----------KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH---------------------LLHRN 188 (389)
Q Consensus 142 -----------~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~---------------------~~~~~ 188 (389)
.....|+|+ +|++|.++. ..++.|++||+.+|.......+ ...+-
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 234679999 577677764 4458999999988764211100 01122
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-------------ccCCCceEEEEEcCCCcEEEEEc-CCeEEEE
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------------RTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 254 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-------------~gh~~~v~sv~fspdg~~laS~s-D~tIklW 254 (389)
..|+|. +++..+++-+.+++|++||..++.+.... .++...+..++++|+|+++++.+ +++|++|
T Consensus 807 ~Gvavd-~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCA-KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEe-CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 577886 56666666789999999999998876442 12334788999999999999988 9999999
Q ss_pred eCC-CcE--EEEec
Q 016446 255 NFR-GEL--VTSFE 265 (389)
Q Consensus 255 d~~-G~~--l~tl~ 265 (389)
|++ ++. +.+++
T Consensus 886 d~~~~~~~~~~~l~ 899 (1057)
T PLN02919 886 DLNKGEAAEILTLE 899 (1057)
T ss_pred ECCCCccceeEeec
Confidence 997 654 34454
No 234
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.38 E-value=3e-10 Score=115.61 Aligned_cols=322 Identities=16% Similarity=0.211 Sum_probs=215.0
Q ss_pred EEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecC---CCcceeee---e
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD---NFSSLKCR---S 77 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~---d~~~l~~~---~ 77 (389)
|..+.+| |.+|| ..+-.-|++|.-..+-.|.++. | .-|+-+-|||+|++|.+=+.- +. +....+.+ +
T Consensus 35 ~~~~~~SP~G~~l~-~~~~~~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~tw~~~-pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 35 VAYVSESPLGTYLF-SEHAAGVECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVTWSRE-PIIEPEIEISPFTSKNN 109 (561)
T ss_pred hhheeecCcchhee-hhhccceEEccccchhheeeee--c-CCceecccCcccceeeeeccC-CccChhhccCCccccCc
Confidence 4556777 55544 5566778899866544444433 3 578999999999999985542 22 22333333 4
Q ss_pred eeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE----EEEecCCcEEEEEEcCC-
Q 016446 78 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSISDKHVQEIKISPG- 152 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~----l~tl~~~~V~~vafS~g- 152 (389)
..+||+..|.+.++...-.+..++|+ -+.|+ -|.+++|-- --..+++.++ ++.. ...+.-..|....|||+
T Consensus 110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp-~~k~s-~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 110 VFVWDIASGMIVFSFNGISQPYLGWP-VLKFS-IDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred eeEEeccCceeEeeccccCCcccccc-eeeee-ecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence 88999999988333222112233432 47888 677787755 3457889997 5552 23444578999999975
Q ss_pred --ceEEEEe--cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE------e-----CCCcEEEEECCC
Q 016446 153 --IMLLIFN--RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK------Q-----ENENLQILDVRN 217 (389)
Q Consensus 153 --~~la~~~--~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~------s-----~D~tIklWd~~t 217 (389)
..||.-. ..+.+.++++|.+.-+..|.+-+...-.--.+.+. +.+.+|+.- + ...++.|.+++.
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 3344332 23556799999999888876544211222334444 346655531 1 347888999974
Q ss_pred CeEEEEcccCCCceEEEEEcCCCcEEEEEc---CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 218 AELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 218 g~~~~~l~gh~~~v~sv~fspdg~~laS~s---D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
..+ ....+-.+.|..++|+|.++.++..+ +.++-+.|+.|.+...+.. .. =+.+.|||.+++++.++.|
T Consensus 265 ~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe--~~-----rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 265 RSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPE--QK-----RNTIFFSPHERYILFAGFD 336 (561)
T ss_pred ccc-ceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCC--cc-----cccccccCcccEEEEecCC
Confidence 444 33336678999999999999887653 8999999999997655432 22 2789999999999999987
Q ss_pred CCcccccCCCCCeEEEEeCCCCe-EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC
Q 016446 295 EPEDQWMEGSAGSINVSSILTGK-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 373 (389)
Q Consensus 295 ~~~~~~~~s~D~tIklWd~~tg~-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~ 373 (389)
+ --|.|-+||..... |+.++.|-. ..-+.|||||+
T Consensus 337 n--------l~gni~i~~~~~rf~~~~~~~~~n------------------------------------~s~~~wspd~q 372 (561)
T COG5354 337 N--------LQGNIEIFDPAGRFKVAGAFNGLN------------------------------------TSYCDWSPDGQ 372 (561)
T ss_pred c--------cccceEEeccCCceEEEEEeecCC------------------------------------ceEeeccCCce
Confidence 4 34789999976433 344676643 33478999999
Q ss_pred EEEEec------CCCcEEEccC
Q 016446 374 EIYTGN------RHGLVHVWSN 389 (389)
Q Consensus 374 ~LaSgs------~D~tIrlW~~ 389 (389)
.+.+.- .|..|+||+.
T Consensus 373 F~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 373 FYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred EEEecCCCcccccCcceEEEEe
Confidence 988775 5889999984
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=4.2e-10 Score=109.10 Aligned_cols=174 Identities=10% Similarity=0.186 Sum_probs=132.1
Q ss_pred CeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcC-CCeEEEEEeecCCceeEEEEEecCCCe
Q 016446 123 SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEK 200 (389)
Q Consensus 123 ~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~-tG~~l~tl~~~~~~~~~v~f~~~~~~~ 200 (389)
..|.|||=...+|+.++. ..+|.+|.++++..++.. . +.|++|... +-+.++.+..-..+.--.+..+..+..
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl--~---~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVL--E---NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEe--c---CeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 478899966777999988 689999999988777665 2 689999987 556666665332232222222222333
Q ss_pred EEE-Ee-CCCcEEEEECCCCeE--EEEcccCCCceEEEEEcCCCcEEEEEc-CC-eEEEEeCC-CcEEEEeccCcCCcCC
Q 016446 201 LLV-KQ-ENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFR-GELVTSFEDHLLWHPD 273 (389)
Q Consensus 201 l~~-~s-~D~tIklWd~~tg~~--~~~l~gh~~~v~sv~fspdg~~laS~s-D~-tIklWd~~-G~~l~tl~gh~~~~~~ 273 (389)
+++ -+ .=|.|+|=|+..-+. ..+.+.|...|..++.+-+|.++||+| .| -|||||.+ |++++.|.--....
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A-- 227 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRA-- 227 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchh--
Confidence 333 33 669999999987665 477889999999999999999999999 77 58999996 99999987433332
Q ss_pred CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 274 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
.|.+++||||+++||.+|. .||+.|+.++.
T Consensus 228 -~iy~iaFSp~~s~LavsSd-----------KgTlHiF~l~~ 257 (346)
T KOG2111|consen 228 -DIYCIAFSPNSSWLAVSSD-----------KGTLHIFSLRD 257 (346)
T ss_pred -eEEEEEeCCCccEEEEEcC-----------CCeEEEEEeec
Confidence 3899999999999998764 49999998864
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=8.3e-11 Score=113.94 Aligned_cols=171 Identities=12% Similarity=0.134 Sum_probs=129.1
Q ss_pred eeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEEcccCCCceEEEEEcC--CCc
Q 016446 165 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFIFLY--ENQ 241 (389)
Q Consensus 165 ~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~-tg~~~~~l~gh~~~v~sv~fsp--dg~ 241 (389)
..+-|||=...+|+.+|.. ...|.+|.+. .++|++ --.++|.+|... .-+.++.++....+=--++..| +..
T Consensus 75 NkviIWDD~k~~~i~el~f-~~~I~~V~l~---r~riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF-NSEIKAVKLR---RDRIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEEe-ccceeeEEEc---CCeEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 4688999778889999884 4888999886 344443 467899999987 3444554444332222334443 555
Q ss_pred EEEEEc--CCeEEEEeCCCcEE---EEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe-EEEEeCCC
Q 016446 242 LFLTFR--NRTVAVWNFRGELV---TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILT 315 (389)
Q Consensus 242 ~laS~s--D~tIklWd~~G~~l---~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t-IklWd~~t 315 (389)
+||-=+ -|.|+|=|+..... .....|... |..|+.+-+|..+||+|.. || |||||.++
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~-----Iacv~Ln~~Gt~vATaStk-----------GTLIRIFdt~~ 213 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSD-----IACVALNLQGTLVATASTK-----------GTLIRIFDTED 213 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCc-----eeEEEEcCCccEEEEeccC-----------cEEEEEEEcCC
Confidence 666545 78999999863333 677889887 7999999999999999764 66 89999999
Q ss_pred CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 316 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 316 g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
|+.++.|+--.+. ..|++++||||+++||.+|+.||+++..
T Consensus 214 g~~l~E~RRG~d~--------------------------------A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 214 GTLLQELRRGVDR--------------------------------ADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred CcEeeeeecCCch--------------------------------heEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 9999998653321 4899999999999999999999999864
No 237
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.36 E-value=3.2e-11 Score=124.19 Aligned_cols=205 Identities=10% Similarity=0.133 Sum_probs=148.5
Q ss_pred cCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCe-EEEEEeecCCce
Q 016446 110 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT-VLKVFYHLLHRN 188 (389)
Q Consensus 110 ~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~-~l~tl~~~~~~~ 188 (389)
||-+.++|....||-+|+||..++++...+. |...+ +.-++--.|.+.-+. |.+.+.- .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~----------p~~~~------s~t~~~~~w~L~~~~s~~k~~~~----~ 61 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFA----------PIASL------SGTCTYTKWGLSADYSPMKWLSL----E 61 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeec----------cchhc------cCcceeEEEEEEeccchHHHHhH----H
Confidence 4668899999999999999998888765553 22222 111344444422111 1111100 0
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc--cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~--gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl 264 (389)
+....+ .+-..++-|-..|.|.++++..|+....+. .|...|.++..+.+-.-|=|++ |..+-.|+.. +..++.+
T Consensus 62 ~~~~~s-~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 62 KAKKAS-LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW 140 (541)
T ss_pred HHhhcc-CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee
Confidence 000001 112233346689999999999999987775 6999999999999888899998 9999999997 8888888
Q ss_pred ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcc
Q 016446 265 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 344 (389)
Q Consensus 265 ~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~ 344 (389)
.+-... +.+++++|||++|++|| ++||+||+++++.+.++.||.
T Consensus 141 ~~~~~~-----~~sl~is~D~~~l~~as-------------~~ik~~~~~~kevv~~ftgh~------------------ 184 (541)
T KOG4547|consen 141 KEQKPL-----VSSLCISPDGKILLTAS-------------RQIKVLDIETKEVVITFTGHG------------------ 184 (541)
T ss_pred ccCCCc-----cceEEEcCCCCEEEecc-------------ceEEEEEccCceEEEEecCCC------------------
Confidence 876654 78999999999999987 699999999999999999998
Q ss_pred ccccccceecccccccCCEEEEEECCC-----CCEEEEe-cCCCcEEEc
Q 016446 345 KLNKSSYIRSTVGEALEDITSLFYDEE-----RNEIYTG-NRHGLVHVW 387 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~V~svafSpd-----g~~LaSg-s~D~tIrlW 387 (389)
.+|.+++|--+ |+++.|+ ..+.-|-+|
T Consensus 185 ----------------s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 185 ----------------SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred ----------------cceEEEEEEEeccccccceeeeccccccceeEE
Confidence 59999999888 6655544 344445555
No 238
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.35 E-value=6.9e-11 Score=113.48 Aligned_cols=257 Identities=12% Similarity=0.111 Sum_probs=174.1
Q ss_pred ccEEEEEec----CceEEEE--ecccceeeeeeecCCcceEEEEEEeeCC-----CEEEEEEEeecCCCcceeeeeeeEe
Q 016446 13 RDIVFALAH----SGVCAAF--SRETNRRICFLNVSPDEVIRSLFYNKNN-----DSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 13 ~~~~a~~~~----~gtiklW--~~~tg~~l~tl~~~~~~~v~sv~~spdg-----~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
...||.++. +..|.|- +-++|+.+..-++.|.-++..+-|.|+- +.||++ . ...|||
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-----~-------D~LRlW 126 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-----S-------DFLRLW 126 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-----c-------CeEEEE
Confidence 567777764 3445553 3446887777777776789999999997 367773 2 256777
Q ss_pred Eec--cCCCCCcceeEe---eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-----EEEEecCCcEEEEEEc-
Q 016446 82 YIR--RGKPDSGFALFE---SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----MLYSISDKHVQEIKIS- 150 (389)
Q Consensus 82 ~i~--~g~~~~~~~l~~---~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-----~l~tl~~~~V~~vafS- 150 (389)
.+- .+++.....|-+ .++-....+..+..-|=++|.++|-|-|..+||+++|. -....|..+|.+|+|+
T Consensus 127 ri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~ 206 (364)
T KOG0290|consen 127 RIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK 206 (364)
T ss_pred eccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEecc
Confidence 764 333310000111 12222233455555566899999999999999999973 2334467899999999
Q ss_pred CC-ceEEEEecCCCCeeEEEEEcCCCeE---EEEEeecCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCC-CeEEEEc
Q 016446 151 PG-IMLLIFNRSSSHVPLKILSIEDGTV---LKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN-AELMEVS 224 (389)
Q Consensus 151 ~g-~~la~~~~~s~d~tiklWd~~tG~~---l~tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~t-g~~~~~l 224 (389)
.+ +.+|+ .+.|+.+|++|++.-+. ++.-.....+...++++.+|..++|+ +-....|.|-|++. ...+..|
T Consensus 207 ~s~~~FAS---vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 207 GSRDVFAS---VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred CccceEEE---ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 43 45544 46789999999875322 11111112345778888777778887 45678999999986 5678899
Q ss_pred ccCCCceEEEEEcCCC-cEEEEEc-CCeEEEEeCC--Cc-------EEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEe
Q 016446 225 RTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR--GE-------LVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYC 292 (389)
Q Consensus 225 ~gh~~~v~sv~fspdg-~~laS~s-D~tIklWd~~--G~-------~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s 292 (389)
++|...|+.|+|-|.. ..|+|++ |-.+-|||++ .. +..+ .++ .|+.+.++| .+..|+.++
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~-------EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGG-------EVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccc-------eeeeeeecccCCCEEEEEe
Confidence 9999999999999865 4677888 8999999985 32 1122 122 389999996 578888765
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.6e-10 Score=118.85 Aligned_cols=271 Identities=15% Similarity=0.162 Sum_probs=187.7
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCC
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQD 122 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D 122 (389)
...-+.|-.+|||++|..+ |.+. -+|+++|+..=-+ -|. +.-..-+.+.-.| .|=..++---.|
T Consensus 51 p~ast~ik~s~DGqY~lAt---G~YK------P~ikvydlanLSL-----KFERhlDae~V~feiLs-DD~SK~v~L~~D 115 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLAT---GTYK------PQIKVYDLANLSL-----KFERHLDAEVVDFEILS-DDYSKSVFLQND 115 (703)
T ss_pred ccccceeEecCCCcEEEEe---cccC------CceEEEEccccee-----eeeecccccceeEEEec-cchhhheEeecC
Confidence 3567899999999998775 5677 6778888754322 121 0000011122222 333334444567
Q ss_pred CeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCe
Q 016446 123 SIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 200 (389)
Q Consensus 123 ~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~ 200 (389)
++|.+=. +-|.- +++. ...-++++++ |.--|..++++ ..|.-.|++.|+-|..|....+.++.|..+ +-.+.
T Consensus 116 R~IefHa-k~G~h-y~~RIP~~GRDm~y~~~scDly~~gsg---~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~~hgL 189 (703)
T KOG2321|consen 116 RTIEFHA-KYGRH-YRTRIPKFGRDMKYHKPSCDLYLVGSG---SEVYRLNLEQGRFLNPFETDSGELNVVSIN-EEHGL 189 (703)
T ss_pred ceeeehh-hcCee-eeeecCcCCccccccCCCccEEEeecC---cceEEEEccccccccccccccccceeeeec-Cccce
Confidence 7775543 22321 2221 2334567777 64333333333 368889999999999999777889999987 55788
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEccc------CCC-----ceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccC
Q 016446 201 LLVKQENENLQILDVRNAELMEVSRT------EFM-----TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 267 (389)
Q Consensus 201 l~~~s~D~tIklWd~~tg~~~~~l~g------h~~-----~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh 267 (389)
|++|..|+.|..||.++.+.+.+|.- |.. .|+++.|+.||=.++.|. +|.|-|+|+. -+.+. ...|
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh 268 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDH 268 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-eccc
Confidence 88899999999999999887666532 333 499999999999999997 9999999997 44332 3567
Q ss_pred cCCcCCCCeeEEEECCC--CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 268 LLWHPDCNTNNIYITSD--QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 268 ~~~~~~~~v~sv~fSpd--G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
....| +..+.|-+. +..++| .|+ ..+||||-.+|+....+..-.
T Consensus 269 ~~e~p---i~~l~~~~~~~q~~v~S--~Dk----------~~~kiWd~~~Gk~~asiEpt~------------------- 314 (703)
T KOG2321|consen 269 GYELP---IKKLDWQDTDQQNKVVS--MDK----------RILKIWDECTGKPMASIEPTS------------------- 314 (703)
T ss_pred CCccc---eeeecccccCCCceEEe--cch----------HHhhhcccccCCceeeccccC-------------------
Confidence 66544 688888776 556665 442 799999999999988887543
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
.+..+.|=|++-++.+|-++..+.-
T Consensus 315 ----------------~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 315 ----------------DLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ----------------CcCceeeecCCceEEEecCCCccee
Confidence 6778899999999999988877653
No 240
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.31 E-value=4.7e-11 Score=114.64 Aligned_cols=225 Identities=13% Similarity=0.157 Sum_probs=159.7
Q ss_pred CeEEEEecC----CCeEEEEeC--CCCeEEEE--ec-CCcEEEEEEcCCc------eEEEEecCCCCeeEEEEEcCC--C
Q 016446 113 GKVLTYSAQ----DSIYKVFDL--KNYTMLYS--IS-DKHVQEIKISPGI------MLLIFNRSSSHVPLKILSIED--G 175 (389)
Q Consensus 113 G~~Las~s~----D~tiklWdl--~~g~~l~t--l~-~~~V~~vafS~g~------~la~~~~~s~d~tiklWd~~t--G 175 (389)
.-+||-||. ...|.|=.+ .+++.+.. +. ...+..+-|.|.+ .||++ + ..+|||.+.. +
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-~----D~LRlWri~~ee~ 133 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-S----DFLRLWRIGDEES 133 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-c----CeEEEEeccCcCC
Confidence 446777763 344555443 34554322 22 3578889998644 56654 2 3799999863 2
Q ss_pred eEE--EEE-----eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE---EEEcccCCCceEEEEEcCCCc-EEE
Q 016446 176 TVL--KVF-----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYENQ-LFL 244 (389)
Q Consensus 176 ~~l--~tl-----~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~---~~~l~gh~~~v~sv~fspdg~-~la 244 (389)
+.. ..| ..+..+..+..+++.++.+|.++|-|-|.-|||+++|.. ...|-.|.+.|..|+|+.+|. .||
T Consensus 134 ~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FA 213 (364)
T KOG0290|consen 134 RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFA 213 (364)
T ss_pred ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEE
Confidence 211 112 134456678888888889999999999999999999743 556889999999999998764 678
Q ss_pred EEc-CCeEEEEeCC-CcE-EEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEE
Q 016446 245 TFR-NRTVAVWNFR-GEL-VTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCL 319 (389)
Q Consensus 245 S~s-D~tIklWd~~-G~~-l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l 319 (389)
|.+ ||.||+.|++ -+- --..|+-+...+ ...+++++ |-+|+|+-.+|. ..|-|-|++- +..+
T Consensus 214 SvgaDGSvRmFDLR~leHSTIIYE~p~~~~p---LlRLswnkqDpnymATf~~dS----------~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 214 SVGADGSVRMFDLRSLEHSTIIYEDPSPSTP---LLRLSWNKQDPNYMATFAMDS----------NKVVILDIRVPCTPV 280 (364)
T ss_pred EecCCCcEEEEEecccccceEEecCCCCCCc---ceeeccCcCCchHHhhhhcCC----------ceEEEEEecCCCcce
Confidence 888 9999999986 321 112333332211 45677766 567888876652 6788999975 6678
Q ss_pred EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEccC
Q 016446 320 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 320 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~~ 389 (389)
..|++|+ ..|+.+++.|.. ..|.|++.|..+-+||.
T Consensus 281 a~L~~H~----------------------------------a~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 281 ARLRNHQ----------------------------------ASVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred ehhhcCc----------------------------------ccccceEecCCCCceeeecCCcceEEEEec
Confidence 9999999 589999999976 68999999999999984
No 241
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.30 E-value=1.4e-08 Score=102.06 Aligned_cols=263 Identities=12% Similarity=0.113 Sum_probs=156.4
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecC----------CCeEEEEeCCCCeEEEEec-C---
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLYSIS-D--- 141 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~----------D~tiklWdl~~g~~l~tl~-~--- 141 (389)
.++.+-|..++++... +.... .|..+ +| |||+.|..+.. +..|.+||+++++.+..+. .
T Consensus 27 ~~v~ViD~~~~~v~g~---i~~G~--~P~~~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGM---TDGGF--LPNPV-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEE---EEccC--CCcee-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 4555566566554211 11111 23344 87 89987765554 8899999999999998886 1
Q ss_pred -----CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 016446 142 -----KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 215 (389)
Q Consensus 142 -----~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~ 215 (389)
..-..+++| +|.+|.++. -+.+..|-+.|+++++.+.++.- .....+.-. ..+...+-+.|+...--.+
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n-~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t--~e~~~~~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQ-FSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPT--ANDTFFMHCRDGSLAKVGY 174 (352)
T ss_pred hhhccCccceEEECCCCCEEEEec-CCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEe--cCCccEEEeecCceEEEEe
Confidence 234589999 677887664 23368999999999999998873 111111111 1112222233433333222
Q ss_pred C-CCeEE----EEcccCCCceEEE-EEcC-CCcEEEEEcCCeEEEEeCCCc------EEEEeccC---cCCcCCCCeeEE
Q 016446 216 R-NAELM----EVSRTEFMTPSAF-IFLY-ENQLFLTFRNRTVAVWNFRGE------LVTSFEDH---LLWHPDCNTNNI 279 (389)
Q Consensus 216 ~-tg~~~----~~l~gh~~~v~sv-~fsp-dg~~laS~sD~tIklWd~~G~------~l~tl~gh---~~~~~~~~v~sv 279 (389)
. +|+.. ..+.+-...+..= .|+| ||+++-.+..|+|.+=|+.+. .+.++... ..|.+.. ..-+
T Consensus 175 d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g-~q~i 253 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG-WQQV 253 (352)
T ss_pred cCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCc-ceeE
Confidence 2 12211 1111111000000 4555 888776665699999996432 23333221 1344432 3559
Q ss_pred EECCCCCEEEEEecC-CCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceeccccc
Q 016446 280 YITSDQDLIISYCKA-EPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 358 (389)
Q Consensus 280 ~fSpdG~~laS~s~D-~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (389)
+++|||++|...... ..+++-. ..+.|-++|..+++.+..+.--
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~--~~~~V~ViD~~t~kvi~~i~vG--------------------------------- 298 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKT--ASRFLFVVDAKTGKRLRKIELG--------------------------------- 298 (352)
T ss_pred EEcCCCCEEEEEecCCccccccC--CCCEEEEEECCCCeEEEEEeCC---------------------------------
Confidence 999999999874311 0000001 1258999999999999998632
Q ss_pred ccCCEEEEEECCCCC-EEEEec-CCCcEEEcc
Q 016446 359 ALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 388 (389)
Q Consensus 359 ~~~~V~svafSpdg~-~LaSgs-~D~tIrlW~ 388 (389)
..+++++|||||+ .|+..+ .+++|.+-|
T Consensus 299 --~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 299 --HEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred --CceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 3799999999999 999888 578887765
No 242
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=4.7e-10 Score=111.29 Aligned_cols=273 Identities=10% Similarity=0.083 Sum_probs=192.3
Q ss_pred EEEEEee--ccEEEEEecCceEEEEeccc------ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSRET------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~~t------g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
|-.|.|+ ++.||++..|..++||+++. -+++.....+|-.-|.|++|+..+..|.| |..+ .+
T Consensus 59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S----G~~~------~~ 128 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS----GERW------GT 128 (609)
T ss_pred cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec----CCCc------ce
Confidence 5678899 89999999999999999863 35665444455478999999999998888 6777 67
Q ss_pred eeEeEeccCCCCCcceeEeee-cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe----EEEEec-CCcEEEEEEcC
Q 016446 78 TKIEYIRRGKPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSIS-DKHVQEIKISP 151 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~-~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~----~l~tl~-~~~V~~vafS~ 151 (389)
+-+-||.+.+. .-+|.++ ..+.++.+.-+ |-..+||+.+.|+-|-+||....+ +..-.. +....++-|.|
T Consensus 129 VI~HDiEt~qs---i~V~~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 129 VIKHDIETKQS---IYVANENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred eEeeeccccee---eeeecccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 77777776654 3355533 45566777887 667799999999999999986544 222222 45788999996
Q ss_pred --CceEEEEecCCCCeeEEEEEcCCCeE-E------EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE
Q 016446 152 --GIMLLIFNRSSSHVPLKILSIEDGTV-L------KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 222 (389)
Q Consensus 152 --g~~la~~~~~s~d~tiklWd~~tG~~-l------~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~ 222 (389)
-..||+.++. +-+-|||+.--+. + +.|+........+.|+ |.|.++++--....=-++|+-+.+|.-
T Consensus 205 ~~P~Li~~~~~~---~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~-~~G~Q~msiRR~~~P~~~D~~S~R~~V 280 (609)
T KOG4227|consen 205 ETPALILVNSET---GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS-PSGNQFMSIRRGKCPLYFDFISQRCFV 280 (609)
T ss_pred CCceeEEecccc---CCCCceeeccccchHHhhhccccCcccchhhhheeeC-CCCCeehhhhccCCCEEeeeeccccee
Confidence 4566665444 4578999864221 1 1122111123678887 556666665555566678888777744
Q ss_pred EcccCCC-------ceEEEEEcCCCcEEEEEc-CCeEEEEeCC------C-----c-------------EEEEeccCcCC
Q 016446 223 VSRTEFM-------TPSAFIFLYENQLFLTFR-NRTVAVWNFR------G-----E-------------LVTSFEDHLLW 270 (389)
Q Consensus 223 ~l~gh~~-------~v~sv~fspdg~~laS~s-D~tIklWd~~------G-----~-------------~l~tl~gh~~~ 270 (389)
.--.|+. .+.+++|-.|-. ++||+ |=.|.+|.+- | . .+..|+||-.-
T Consensus 281 ~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv 359 (609)
T KOG4227|consen 281 LKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSV 359 (609)
T ss_pred EeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccc
Confidence 3333432 577888887766 89999 6799999741 2 1 34678999875
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
++.|.|+|-..+|+|.+- .+.||||.-
T Consensus 360 -----~NQVRF~~H~~~l~SSGV-----------E~~~KlWS~ 386 (609)
T KOG4227|consen 360 -----PNQVRFSQHNNLLVSSGV-----------ENSFKLWSD 386 (609)
T ss_pred -----ccceeecCCcceEeccch-----------hhheecccc
Confidence 789999999999998654 379999973
No 243
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=3e-10 Score=111.79 Aligned_cols=176 Identities=10% Similarity=0.097 Sum_probs=130.3
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCC-C--
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIED-G-- 175 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~t-G-- 175 (389)
..||+. +.=-.+|.+..|-+||++|-+ .++...|+ +..|.++||-| +.-||++... -|-||.... +
T Consensus 102 r~~aWh-qH~~~fava~nddvVriy~ks-st~pt~Lks~sQrnvtclawRPlsaselavgCr~----gIciW~~s~tln~ 175 (445)
T KOG2139|consen 102 RGVAWH-QHIIAFAVATNDDVVRIYDKS-STCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA----GICIWSDSRTLNA 175 (445)
T ss_pred eeEeec-hhhhhhhhhccCcEEEEeccC-CCCCceecchhhcceeEEEeccCCcceeeeeecc----eeEEEEcCccccc
Confidence 458886 655567888999999999964 46655554 57899999997 6788887655 488997542 1
Q ss_pred ---------eEEEEEe--ecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEE
Q 016446 176 ---------TVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 176 ---------~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
-+++.|+ +| -.|.++++. +|+..+++++ .|..|.|||+.+|.++-...-.-..+.-+.|||||.+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn-~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWN-EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEc-CCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 1222333 33 456888887 6788888877 88999999999999876654445567889999999999
Q ss_pred EEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 244 LTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 244 aS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
..+. |++.+||+-+ ..+.+=..+.. . |.+..+||+|.+|.-.+.
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsg-r-----vqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSG-R-----VQTACWSPCGSFLLFACS 300 (445)
T ss_pred EEecccceeeeehhcccceecceeccCC-c-----eeeeeecCCCCEEEEEEc
Confidence 9998 9999999653 33333222322 3 789999999999987764
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=3.2e-10 Score=111.01 Aligned_cols=247 Identities=13% Similarity=0.164 Sum_probs=161.0
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCC---Ce--EEEEec--------------CCcEEEEEEc-CCc---eEEEEe
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YT--MLYSIS--------------DKHVQEIKIS-PGI---MLLIFN 159 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~---g~--~l~tl~--------------~~~V~~vafS-~g~---~la~~~ 159 (389)
+..|+|+ -.|.+||+|.-+|-|-++.-+. ++ ...+++ .+.|..++.- +++ .|++
T Consensus 28 is~vef~-~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls-- 104 (433)
T KOG1354|consen 28 ISAVEFD-HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS-- 104 (433)
T ss_pred eeeEEee-cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe--
Confidence 4569998 7999999999999999997432 22 112221 1468888888 432 4433
Q ss_pred cCCCCeeEEEEEcCCCeE-----------------------------------EEEEe-ecCCceeEEEEEecCCCeEEE
Q 016446 160 RSSSHVPLKILSIEDGTV-----------------------------------LKVFY-HLLHRNKKVDFIEQFNEKLLV 203 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~-----------------------------------l~tl~-~~~~~~~~v~f~~~~~~~l~~ 203 (389)
..|+|||||-+..... .+.+. .|.=+++++.++ .|.+.+ .
T Consensus 105 --tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~-l 180 (433)
T KOG1354|consen 105 --TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETF-L 180 (433)
T ss_pred --cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceE-e
Confidence 4579999998864221 11222 466678888887 444444 4
Q ss_pred EeCCCcEEEEECC-CCeEEEE--cccCC-----CceEEEEEcCC-CcEEEEEc-CCeEEEEeCC-Cc-EE---EEeccCc
Q 016446 204 KQENENLQILDVR-NAELMEV--SRTEF-----MTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GE-LV---TSFEDHL 268 (389)
Q Consensus 204 ~s~D~tIklWd~~-tg~~~~~--l~gh~-----~~v~sv~fspd-g~~laS~s-D~tIklWd~~-G~-~l---~tl~gh~ 268 (389)
+..|=.|.||+++ +-++... .+.|. .-|++.-|+|. ..+|+-++ -|+|||-|++ .. |. +.++...
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 5688999999987 3333222 33443 35778889884 45666665 9999999996 22 22 2233222
Q ss_pred CCcC-------CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC-CCCeEEEEecCCCCCCCcccccCCCCC
Q 016446 269 LWHP-------DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI-LTGKCLAKINATNCSPKVDDELGSSST 340 (389)
Q Consensus 269 ~~~~-------~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~-~tg~~l~tl~gH~~~~~~~~~~~~~~~ 340 (389)
++.+ ...|..|.||++|+||+|-.- -||||||+ ...+.+.+.+-|...
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy------------ltvk~wD~nme~~pv~t~~vh~~l------------ 316 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY------------LTVKLWDLNMEAKPVETYPVHEYL------------ 316 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc------------ceeEEEeccccCCcceEEeehHhH------------
Confidence 2110 013688999999999998532 79999999 678889999988721
Q ss_pred CCccccccccceeccc-ccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 341 GKSKKLNKSSYIRSTV-GEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~-~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+.++-+.+ +...-.=..++||-++..+.|||..+.+|+.+
T Consensus 317 --------r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 317 --------RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred --------HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 00000000 00001345689999999999999999999876
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.8e-09 Score=107.07 Aligned_cols=258 Identities=15% Similarity=0.151 Sum_probs=168.8
Q ss_pred ccccEEEEEee----ccEEEEEecCceEEEEecccceeeee------eecCCcceEEEEEEeeCCCEEEEEEEeecCCCc
Q 016446 2 KRTKVIEIVAA----RDIVFALAHSGVCAAFSRETNRRICF------LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFS 71 (389)
Q Consensus 2 ~~~~v~~i~~~----~~~~a~~~~~gtiklW~~~tg~~l~t------l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~ 71 (389)
++.+|...+|. .+++...+-+..+.....+-+.+... +.+. ...|..++.. || +|+++. .+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~-~~~I~gl~~~-dg-~Litc~----~s-- 124 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLG-TKSIKGLKLA-DG-TLITCV----SS-- 124 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccc-cccccchhhc-CC-EEEEEe----cC--
Confidence 34556666666 44444444666666666654444433 2333 2456666553 34 455532 22
Q ss_pred ceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC--CeEEEEeCCCCeEEEEecCCcEEEEEE
Q 016446 72 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSISDKHVQEIKI 149 (389)
Q Consensus 72 ~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D--~tiklWdl~~g~~l~tl~~~~V~~vaf 149 (389)
..+.+|.+..+........+- ........|.=++.+-.++|+|+-. ..+++||+++++.+++.+. |
T Consensus 125 ----G~l~~~~~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN--v----- 192 (412)
T KOG3881|consen 125 ----GNLQVRHDKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN--V----- 192 (412)
T ss_pred ----CcEEEEeccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC--C-----
Confidence 445666666665432211111 1112223354443334577788888 8999999988866555431 1
Q ss_pred cCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCe-EEEEcccC
Q 016446 150 SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAE-LMEVSRTE 227 (389)
Q Consensus 150 S~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~-~~~l~~~s~D~tIklWd~~tg~-~~~~l~gh 227 (389)
|+.+| +.-|.+|+. .+.|.+++ ..++|++..-+.+|+||.+.++ ++..+.--
T Consensus 193 -pnD~L--------~LrVPvW~t-----------------di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~ 246 (412)
T KOG3881|consen 193 -PNDRL--------GLRVPVWIT-----------------DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL 246 (412)
T ss_pred -CCccc--------cceeeeeec-----------------cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc
Confidence 45454 245777873 23454332 4677777888899999988754 56666666
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE-eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t-l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
...+.++..-|.|+.+.++. -+.+...|.+ |+++.. |.|-.+. +.+|.-.|.+++|||++-|
T Consensus 247 E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs-----irsih~hp~~~~las~GLD---------- 311 (412)
T KOG3881|consen 247 ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS-----IRSIHCHPTHPVLASCGLD---------- 311 (412)
T ss_pred cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCC-----cceEEEcCCCceEEeeccc----------
Confidence 77899999999999999998 9999999997 776654 7777765 7999999999999999765
Q ss_pred CCeEEEEeCCCCeEEEEe
Q 016446 305 AGSINVSSILTGKCLAKI 322 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl 322 (389)
..+||.|++|-+++...
T Consensus 312 -RyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 312 -RYVRIHDIKTRKLLHKV 328 (412)
T ss_pred -eeEEEeecccchhhhhh
Confidence 99999999998877554
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.7e-09 Score=107.20 Aligned_cols=228 Identities=16% Similarity=0.158 Sum_probs=166.0
Q ss_pred eEEEe-cCCCeEEEEecCCCeEEEEeCCCCeEEEEe------c--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCC
Q 016446 105 FVEFD-DVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------S--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 105 ~v~Fs-~pdG~~Las~s~D~tiklWdl~~g~~l~tl------~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
+++|- .++.+.|.-.+.|..+.........+...+ + ...|...+..+|..++ +-+ ++.+++|.++.|
T Consensus 60 ~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Lit-c~~---sG~l~~~~~k~~ 135 (412)
T KOG3881|consen 60 SLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLIT-CVS---SGNLQVRHDKSG 135 (412)
T ss_pred hheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEE-Eec---CCcEEEEeccCC
Confidence 45554 133455766767777777777665554332 2 3578888888877664 422 268999998843
Q ss_pred e----EEEEEeecCCceeEEEEEecCCCeEEEEeCC--CcEEEEECCCCeEEEEcccC-----------CCceEEEEEcC
Q 016446 176 T----VLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTE-----------FMTPSAFIFLY 238 (389)
Q Consensus 176 ~----~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D--~tIklWd~~tg~~~~~l~gh-----------~~~v~sv~fsp 238 (389)
- .+..+..+ ..+..|.-.+.++..+|+|+.. ..++|||+++. .+++.+- .-|+.++.|.|
T Consensus 136 d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 136 DLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred ccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeeccceecC
Confidence 3 33344422 4444555444445666778887 89999999887 3444332 23678899999
Q ss_pred C--CcEEEEEc-CCeEEEEeCC-C-cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 239 E--NQLFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 239 d--g~~laS~s-D~tIklWd~~-G-~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
+ .+.||++. -+.+|+||.+ + +.+..+.--..+ +.++...|+|++|..|-. -+.+..+|+
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~-----is~~~l~p~gn~Iy~gn~-----------~g~l~~FD~ 276 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP-----ISSTGLTPSGNFIYTGNT-----------KGQLAKFDL 276 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCc-----ceeeeecCCCcEEEEecc-----------cchhheecc
Confidence 8 99999998 9999999996 4 467666544444 799999999999999854 388999999
Q ss_pred CCCeEEEE-ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 314 LTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 314 ~tg~~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.+|+++.. ++|-+ ..|.+|-.+|.++.|||++-|.-|||.|.
T Consensus 277 r~~kl~g~~~kg~t----------------------------------Gsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 277 RGGKLLGCGLKGIT----------------------------------GSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred cCceeeccccCCcc----------------------------------CCcceEEEcCCCceEEeeccceeEEEeec
Confidence 99998866 77776 47999999999999999999999999873
No 247
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.3e-08 Score=104.61 Aligned_cols=236 Identities=9% Similarity=0.052 Sum_probs=146.9
Q ss_pred EEEeeccEEEEEecCc--eEEEEecc-cceeeeeeecCCcceEEEEEEeeCCCE-EEEEEEeecCCCcceeeeeeeEeEe
Q 016446 8 EIVAARDIVFALAHSG--VCAAFSRE-TNRRICFLNVSPDEVIRSLFYNKNNDS-LITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 8 ~i~~~~~~~a~~~~~g--tiklW~~~-tg~~l~tl~~~~~~~v~sv~~spdg~~-l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
.+.|+..+++...+.+ .-+||=.+ .|...+.+... ....+-.|||||+. ++.++. .+.+ .++.++++
T Consensus 150 ~~~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~-~~~~------~~Iyv~dl 220 (419)
T PRK04043 150 SIDWMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG--GLNIFPKWANKEQTAFYYTSY-GERK------PTLYKYNL 220 (419)
T ss_pred CcCceeeEEEEEEccCCCcceEEEECCCCCceeEEccC--CCeEeEEECCCCCcEEEEEEc-cCCC------CEEEEEEC
Confidence 3456666666665443 34444322 27666666654 37789999999996 555443 3234 57888898
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEE-ecCC--CeEEEEeCCCCeEEEEec-C-CcEEEEEEc-CCceEEE
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY-SAQD--SIYKVFDLKNYTMLYSIS-D-KHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las-~s~D--~tiklWdl~~g~~l~tl~-~-~~V~~vafS-~g~~la~ 157 (389)
.+|+. ..+.. ..+.....+|| |||+.|+. .+.+ ..|.+.|+.+++.. .+. . .....-.|| ||+.|+.
T Consensus 221 ~tg~~---~~lt~--~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F 293 (419)
T PRK04043 221 YTGKK---EKIAS--SQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVF 293 (419)
T ss_pred CCCcE---EEEec--CCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEE
Confidence 88874 33432 22333457898 89987664 3333 45667788777743 333 2 223456899 6888877
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCC---------CcEEEEECCCCeEEEEcccCC
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN---------ENLQILDVRNAELMEVSRTEF 228 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D---------~tIklWd~~tg~~~~~l~gh~ 228 (389)
.+.......|.+.|+.+|+..+.... +. ....++ |+++.|+..+.. ..|.+.|+++|+..+...+
T Consensus 294 ~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-- 367 (419)
T PRK04043 294 VSDRLGYPNIFMKKLNSGSVEQVVFH--GK-NNSSVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-- 367 (419)
T ss_pred EECCCCCceEEEEECCCCCeEeCccC--CC-cCceEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC--
Confidence 76444444788899999887544331 21 234676 789988886532 3678889999987554433
Q ss_pred CceEEEEEcCCCcEEEEEc--CCe--EEEEeCCCcEEEEec
Q 016446 229 MTPSAFIFLYENQLFLTFR--NRT--VAVWNFRGELVTSFE 265 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~s--D~t--IklWd~~G~~l~tl~ 265 (389)
..-....|+|||+.|+-.+ .+. +.+.+++|.-.+.|.
T Consensus 368 ~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 368 GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 2334688999999887664 333 445556676544443
No 248
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=5.4e-10 Score=114.59 Aligned_cols=162 Identities=10% Similarity=0.022 Sum_probs=122.2
Q ss_pred EecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCCCeE-EEEeCCCcEEEEE
Q 016446 138 SISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKL-LVKQENENLQILD 214 (389)
Q Consensus 138 tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l-~~~s~D~tIklWd 214 (389)
+.|.+=|++++++ +|..||++ |+|..+-+||...-+++..+. +|+..|++|.|.|..+..| +++..|..|||+|
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SG---SDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASG---SDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred ccccceecceeecCCCCEEeec---CCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 4455679999999 89999875 667899999999888998886 9999999999997666555 4567999999999
Q ss_pred CCC----------CeEEEEcccCCCceEEEEEcCCC-cEEEEEc-CCeEEEEeCCC--cEEEEeccCcCCcC----CCCe
Q 016446 215 VRN----------AELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFRG--ELVTSFEDHLLWHP----DCNT 276 (389)
Q Consensus 215 ~~t----------g~~~~~l~gh~~~v~sv~fspdg-~~laS~s-D~tIklWd~~G--~~l~tl~gh~~~~~----~~~v 276 (389)
+.. -+......-|...|..+|--|++ ..+-|++ ||||+-+|+.- .|-.....|+..+. .-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 974 12344456799999999999999 8899999 99999999852 33222221211000 0125
Q ss_pred eEEEECCC-CCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 277 NNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 277 ~sv~fSpd-G~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
.++.+||. -.+||.|+. |--+||+|.
T Consensus 204 k~ltisp~rp~~laVGgs-----------dpfarLYD~ 230 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGS-----------DPFARLYDR 230 (758)
T ss_pred eeeeecCCCCceEEecCC-----------Cchhhhhhh
Confidence 78999995 567777654 578999994
No 249
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.17 E-value=1.1e-10 Score=110.88 Aligned_cols=135 Identities=11% Similarity=0.119 Sum_probs=106.4
Q ss_pred CCCeeEEEEEcCCCeE----------EEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC--CeE--EEEcccC
Q 016446 162 SSHVPLKILSIEDGTV----------LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AEL--MEVSRTE 227 (389)
Q Consensus 162 s~d~tiklWd~~tG~~----------l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t--g~~--~~~l~gh 227 (389)
-+++.+-+||+.+|.. ......|.+++.+|.|. +.-..=++++.+..+-.|+++. |.+ .....--
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence 3457899999999833 33334577889999996 3334556677888888888763 444 2222223
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D 305 (389)
+-.|..|..-||++.|||++ |+.||++.-+ +..|..|+-|... |++||||||-..+|++|+|
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag-----vn~vAfspd~~lmAaaskD----------- 314 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG-----VNAVAFSPDCELMAAASKD----------- 314 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc-----eeEEEeCCCCchhhhccCC-----------
Confidence 44688899999999999999 9999999997 9999999999876 8999999999999999876
Q ss_pred CeEEEEeC
Q 016446 306 GSINVSSI 313 (389)
Q Consensus 306 ~tIklWd~ 313 (389)
++|-||++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 89999985
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.14 E-value=1.2e-09 Score=106.49 Aligned_cols=302 Identities=14% Similarity=0.118 Sum_probs=183.3
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
|.+||++++.+.+ +-|.+|=|.++-+.- -+.|--|-++.|.-.++.+. + .| --+.+|++.+.+. ..
T Consensus 20 g~yiAs~~~yrlv-iRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~-y--k~------~~vqvwsl~Qpew--~c 85 (447)
T KOG4497|consen 20 GNYIASLSRYRLV-IRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVA-Y--KD------PKVQVWSLVQPEW--YC 85 (447)
T ss_pred CCeeeeeeeeEEE-EeccchhhHHHHHHH--HHHhhheeeeccceeeeeee-e--cc------ceEEEEEeeccee--EE
Confidence 8888888877443 556553332221111 13455667777777766642 1 23 3567788877765 12
Q ss_pred eeEeeecccCceeEEEecCCC-eEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEE
Q 016446 93 ALFESESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 93 ~l~~~~~~~~~~~v~Fs~pdG-~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tikl 169 (389)
++ .+......++.+| ||| .+|.+...|-.|.+|.+.|.++.+.-+ ...+..++|. +|++.|..+.-.--..+.|
T Consensus 86 kI--deg~agls~~~WS-PdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 86 KI--DEGQAGLSSISWS-PDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred Ee--ccCCCcceeeeEC-CCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHH
Confidence 21 1222223468998 899 577788899999999998888755444 5678999999 6887777643322123334
Q ss_pred EEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC-CceEEEEEcCCCcEEEEEc-
Q 016446 170 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR- 247 (389)
Q Consensus 170 Wd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~-~~v~sv~fspdg~~laS~s- 247 (389)
..-+.-++++.+.-.+--...+.++ |+ +.-+-+||--- --+++.-|- -.+..++++|-+|+||-|+
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWs-Pd---------g~~laVwd~~L--eykv~aYe~~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWS-PD---------GNWLAVWDNVL--EYKVYAYERGLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceEC-CC---------CcEEEEecchh--hheeeeeeeccceeEEEeccccceEEeecc
Confidence 3333344555555433444677787 54 44555665210 011111122 3577899999999999999
Q ss_pred CCeEEEEe-----CCCcEE--------------------------------------------------------EEecc
Q 016446 248 NRTVAVWN-----FRGELV--------------------------------------------------------TSFED 266 (389)
Q Consensus 248 D~tIklWd-----~~G~~l--------------------------------------------------------~tl~g 266 (389)
|+.+|+-| .-||.+ .+|+.
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 99998754 112211 01110
Q ss_pred Cc-CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 267 HL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 267 h~-~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
-. -+.|-|.+--++||||.+|+|+-.. .--+.+-|||++.-++-+.|..-
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd---------~~PnalW~Wdlq~l~l~avLiQk-------------------- 361 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRND---------KYPNALWLWDLQNLKLHAVLIQK-------------------- 361 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecC---------CCCceEEEEechhhhhhhhhhhc--------------------
Confidence 00 0223346678999999999998532 23467999998865554444321
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
.+|.+..++|....|+-.-.---+.+|
T Consensus 362 ---------------~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 362 ---------------HPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred ---------------cceeEEEeCCCCceEEEEcCCceEEEE
Confidence 489999999998887765544335555
No 251
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=2.9e-08 Score=102.13 Aligned_cols=201 Identities=8% Similarity=0.039 Sum_probs=133.1
Q ss_pred ceeEEEecCCCeE-EEEecCC---CeEEEEeCCCCeEEEEe-cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe
Q 016446 103 PGFVEFDDVNGKV-LTYSAQD---SIYKVFDLKNYTMLYSI-SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 103 ~~~v~Fs~pdG~~-Las~s~D---~tiklWdl~~g~~l~tl-~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
..+-.|| |||+. ++..+.+ ..|.++|+.+|+...-. ..+.+...+|| ||..||.......+..|.+.|+.+|+
T Consensus 190 ~~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 190 NIFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred eEeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 3468998 99984 6655443 57888899988854322 34556678899 68788776655556788889998887
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-C----
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N---- 248 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~--tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D---- 248 (389)
. +.++.+........|+ |||..|+..+ ..+ .|-+.|+.+|+..+...... . ...|||||+.||-.+ .
T Consensus 269 ~-~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~--~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 269 L-TQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N--NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred E-EEcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-c--CceECCCCCEEEEEEcCCCcc
Confidence 4 4455433334456787 7898888876 333 67777999988866543211 1 248999999988765 3
Q ss_pred ---C--eEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 249 ---R--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 249 ---~--tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
+ .|.+-|+++...+.|.... . .....|||||++|+-.+.+ +....+.+.++. |+-...|.
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT~~~-~-----~~~p~~SPDG~~I~f~~~~--------~~~~~L~~~~l~-g~~~~~l~ 408 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLTANG-V-----NQFPRFSSDGGSIMFIKYL--------GNQSALGIIRLN-YNKSFLFP 408 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECCCCC-C-----cCCeEECCCCCEEEEEEcc--------CCcEEEEEEecC-CCeeEEee
Confidence 2 5666687743445566442 1 2468899999999877653 222347777754 65555554
Q ss_pred C
Q 016446 324 A 324 (389)
Q Consensus 324 g 324 (389)
.
T Consensus 409 ~ 409 (419)
T PRK04043 409 L 409 (419)
T ss_pred c
Confidence 3
No 252
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.10 E-value=2.2e-08 Score=97.88 Aligned_cols=286 Identities=10% Similarity=0.065 Sum_probs=171.9
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcce
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 93 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~ 93 (389)
-+|-.+..++.|.+|++.+-+--|.+.-+. ..+-++.+||||.-|...|. .+ -.|.+|.+.+.+..
T Consensus 62 ~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~-agls~~~WSPdgrhiL~tse---F~------lriTVWSL~t~~~~---- 127 (447)
T KOG4497|consen 62 HILCVAYKDPKVQVWSLVQPEWYCKIDEGQ-AGLSSISWSPDGRHILLTSE---FD------LRITVWSLNTQKGY---- 127 (447)
T ss_pred eeeeeeeccceEEEEEeecceeEEEeccCC-CcceeeeECCCcceEeeeec---ce------eEEEEEEeccceeE----
Confidence 356677888999999998888888888876 78999999999976766654 44 56788998776641
Q ss_pred eEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCC---eEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeE
Q 016446 94 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPL 167 (389)
Q Consensus 94 l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g---~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~ti 167 (389)
+-.+- ...+..++|. ||||+.|-++....-..-++... +++..+. .-....+-+| ||..||
T Consensus 128 ~~~~p-K~~~kg~~f~-~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la----------- 194 (447)
T KOG4497|consen 128 LLPHP-KTNVKGYAFH-PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA----------- 194 (447)
T ss_pred Eeccc-ccCceeEEEC-CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE-----------
Confidence 11100 0112459997 99999998875311101111000 0122222 1234556666 355544
Q ss_pred EEEEcCCCeEEEEEeec-CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe---------------------------
Q 016446 168 KILSIEDGTVLKVFYHL-LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--------------------------- 219 (389)
Q Consensus 168 klWd~~tG~~l~tl~~~-~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~--------------------------- 219 (389)
+||.- -.-+.+..| +-.+..|+++ |-++.|+.|+.|+.+|+-|--+-+
T Consensus 195 -Vwd~~--Leykv~aYe~~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ 270 (447)
T KOG4497|consen 195 -VWDNV--LEYKVYAYERGLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIV 270 (447)
T ss_pred -Eecch--hhheeeeeeeccceeEEEec-cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchh
Confidence 44411 001111211 1345666666 556666667777777664322210
Q ss_pred ---------------------------------EEEEccc------CCCceEEEEEcCCCcEEEEEcC---CeEEEEeCC
Q 016446 220 ---------------------------------LMEVSRT------EFMTPSAFIFLYENQLFLTFRN---RTVAVWNFR 257 (389)
Q Consensus 220 ---------------------------------~~~~l~g------h~~~v~sv~fspdg~~laS~sD---~tIklWd~~ 257 (389)
.++.++. -.-.+.-++||+|.+++||-.| +-+-|||++
T Consensus 271 ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq 350 (447)
T KOG4497|consen 271 QLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ 350 (447)
T ss_pred hhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEech
Confidence 1112221 1224667899999999999864 578899998
Q ss_pred -CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccC
Q 016446 258 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 336 (389)
Q Consensus 258 -G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~ 336 (389)
-++-..|.. ..+ |....+.|....|+-.-.. --+.+|-..--.++.. .+.
T Consensus 351 ~l~l~avLiQ-k~p-----iraf~WdP~~prL~vctg~-----------srLY~W~psg~~~V~v-P~~----------- 401 (447)
T KOG4497|consen 351 NLKLHAVLIQ-KHP-----IRAFEWDPGRPRLVVCTGK-----------SRLYFWAPSGPRVVGV-PKK----------- 401 (447)
T ss_pred hhhhhhhhhh-ccc-----eeEEEeCCCCceEEEEcCC-----------ceEEEEcCCCceEEec-CCC-----------
Confidence 555544542 233 7889999998888875421 3478898542222211 111
Q ss_pred CCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCC
Q 016446 337 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 382 (389)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~ 382 (389)
| -.|..|.+..+|..|+-.++|.
T Consensus 402 --G---------------------F~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 402 --G---------------------FNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred --C---------------------ceeeeEEecCCCcEEEEEcCCc
Confidence 1 2688889999999888888875
No 253
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.10 E-value=7.3e-08 Score=96.65 Aligned_cols=215 Identities=13% Similarity=0.095 Sum_probs=130.0
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCc-eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEE-EEEcCC
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQE-IKISPG 152 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~-~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~-vafS~g 152 (389)
..+.-.|..+|+. +|.......+ ..++. ++..+..++.|+.+.-+|.++|+.+.... ...+.+ ..+. +
T Consensus 75 g~v~a~d~~tG~~-----~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~-~ 145 (377)
T TIGR03300 75 GTVVALDAETGKR-----LWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVA-N 145 (377)
T ss_pred CeEEEEEccCCcE-----eeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEE-C
Confidence 3455567788886 6653322221 12443 24455567789999999999999987665 333332 2222 4
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe--cCCCeEEEEeCCCcEEEEECCCCeEEEEcccC---
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRNAELMEVSRTE--- 227 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~--~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh--- 227 (389)
+++... ..++.+..||.++|+.+.+++............. ..++.++++..++.+..+|+++|+.+-...-.
T Consensus 146 ~~v~v~---~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 146 GLVVVR---TNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred CEEEEE---CCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 445444 2357899999999999988764322110000000 12467778889999999999999876543211
Q ss_pred --CC--ceEEEE---EcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 016446 228 --FM--TPSAFI---FLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 299 (389)
Q Consensus 228 --~~--~v~sv~---fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~ 299 (389)
.. .+..+. .-.++.++++..++.+..+|.+ |+.+-..+.. .. ...+ .++..+..++.
T Consensus 223 g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~~------~~p~--~~~~~vyv~~~------ 287 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-SY------QGPA--VDDNRLYVTDA------ 287 (377)
T ss_pred CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-Cc------cCce--EeCCEEEEECC------
Confidence 00 001111 1125555554459999999996 9987766521 11 1222 24555655543
Q ss_pred ccCCCCCeEEEEeCCCCeEEEEe
Q 016446 300 WMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 300 ~~~s~D~tIklWd~~tg~~l~tl 322 (389)
||.|..+|..+|+.+...
T Consensus 288 -----~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 288 -----DGVVVALDRRSGSELWKN 305 (377)
T ss_pred -----CCeEEEEECCCCcEEEcc
Confidence 599999999999988665
No 254
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.08 E-value=2.1e-09 Score=110.13 Aligned_cols=92 Identities=18% Similarity=0.280 Sum_probs=86.2
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t 263 (389)
+.+++.+|+ ||+..||.-|.|+.+||+|..+.+++-+++--.....+|+|||||++|++|+ |..|.+|.+. ++.+..
T Consensus 291 g~in~f~FS-~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 291 GSINEFAFS-PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred ccccceeEc-CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 567888898 6899999999999999999999999999999999999999999999999999 9999999996 999999
Q ss_pred eccCcCCcCCCCeeEEEECC
Q 016446 264 FEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSp 283 (389)
=+||..| |..|+|.|
T Consensus 370 GqGHkSW-----Vs~VaFDp 384 (636)
T KOG2394|consen 370 GQGHKSW-----VSVVAFDP 384 (636)
T ss_pred ccccccc-----eeeEeecc
Confidence 9999999 79999986
No 255
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.06 E-value=1.9e-07 Score=86.57 Aligned_cols=213 Identities=16% Similarity=0.136 Sum_probs=132.8
Q ss_pred eeeEeEeccCCCCCcceeEeeec---ccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEE-EEEcC
Q 016446 77 STKIEYIRRGKPDSGFALFESES---LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQE-IKISP 151 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~~~---~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~-vafS~ 151 (389)
++..+|.++|+. +|.... ..++...++ +++..|..++.++.+..||..+|+.+.+.. ...+.. ....+
T Consensus 4 ~l~~~d~~tG~~-----~W~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 76 (238)
T PF13360_consen 4 TLSALDPRTGKE-----LWSYDLGPGIGGPVATAV--PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG 76 (238)
T ss_dssp EEEEEETTTTEE-----EEEEECSSSCSSEEETEE--EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET
T ss_pred EEEEEECCCCCE-----EEEEECCCCCCCccceEE--EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc
Confidence 444566667765 666432 222111134 234455556899999999999999886665 222211 23334
Q ss_pred CceEEEEecCCCCeeEEEEEcCCCeEEEEE-eecCC--ce-eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC
Q 016446 152 GIMLLIFNRSSSHVPLKILSIEDGTVLKVF-YHLLH--RN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 227 (389)
Q Consensus 152 g~~la~~~~~s~d~tiklWd~~tG~~l~tl-~~~~~--~~-~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh 227 (389)
+..+ ... .++.|..+|+++|+.+.+. ..... .. ...... ..++.++++..++.|..+|+++|+.+-....+
T Consensus 77 ~~v~-v~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 77 GRVY-VGT---SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp TEEE-EEE---TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred cccc-ccc---ceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 5444 443 3358999999999999985 32211 11 111221 23788888889999999999999997776554
Q ss_pred CCc----------eEEEEEcCCCcEEEEEcCC-eEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCC
Q 016446 228 FMT----------PSAFIFLYENQLFLTFRNR-TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 295 (389)
Q Consensus 228 ~~~----------v~sv~fspdg~~laS~sD~-tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~ 295 (389)
... +..-....++.++++..++ .+.+ |+. |+.+-... ... +.. .+.++|.+|+.++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~-----~~~-~~~~~~~~l~~~~~-- 220 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISG-----IYS-LPSVDGGTLYVTSS-- 220 (238)
T ss_dssp TT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS------ECE-CEECCCTEEEEEET--
T ss_pred CCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCC-----ccC-CceeeCCEEEEEeC--
Confidence 322 1222333456666666666 5878 996 88654322 111 122 24678899988874
Q ss_pred CcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 296 PEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 296 ~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
|+.|..||+.||+.+.+
T Consensus 221 ---------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 221 ---------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ---------TTEEEEEETTTTEEEEE
T ss_pred ---------CCEEEEEECCCCCEEeE
Confidence 49999999999998754
No 256
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.05 E-value=1.5e-08 Score=98.51 Aligned_cols=213 Identities=10% Similarity=0.025 Sum_probs=149.7
Q ss_pred CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC---CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEEC-
Q 016446 141 DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV- 215 (389)
Q Consensus 141 ~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t---G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~- 215 (389)
-+.|.+-||+ |++++|.+. .+ +.|.|..... -+..++|..|-..+..|.++ |...+|++++.|..-.+|..
T Consensus 10 ~~pitchAwn~drt~iAv~~-~~--~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSP-NN--HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCCceEEecc-CC--ceEEEEEecCCCCceeceehhhhCcceeEEeec-CCCCceeEccCCCCccccccC
Confidence 4789999999 888998864 33 4566655443 45789999999999999998 66789999999999999998
Q ss_pred CCCeE--EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcC-CcCCCCeeEEEECCCCCEEEEE
Q 016446 216 RNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL-WHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 216 ~tg~~--~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~-~~~~~~v~sv~fSpdG~~laS~ 291 (389)
..|+- .-.|.-|+.+...|.|+|....||.|+ -+.|-+|-+++|---=...|.. +++ ..|.++.+.|++-+||.|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPir-Stv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIR-STVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccc-cceeeeeccCCcceeccc
Confidence 44543 223456888999999999999999999 8999999987652110111211 111 238999999999999998
Q ss_pred ecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccc-cccceecccccccCCEEEEEECC
Q 016446 292 CKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN-KSSYIRSTVGEALEDITSLFYDE 370 (389)
Q Consensus 292 s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~svafSp 370 (389)
|.| +..|++.. .|+-+..-. .+.+-|+.+ .+. -|.+.... + .+|..|.|||
T Consensus 165 s~D-----------~k~rVfSa----yIK~Vdekp------ap~pWgsk~---PFG~lm~E~~~~-g---gwvh~v~fs~ 216 (361)
T KOG1523|consen 165 STD-----------GKCRVFSA----YIKGVDEKP------APTPWGSKM---PFGQLMSEASSS-G---GWVHGVLFSP 216 (361)
T ss_pred ccC-----------cceeEEEE----eeeccccCC------CCCCCccCC---cHHHHHHhhccC-C---CceeeeEeCC
Confidence 765 89999973 233332211 001111100 000 02222111 1 5999999999
Q ss_pred CCCEEEEecCCCcEEE
Q 016446 371 ERNEIYTGNRHGLVHV 386 (389)
Q Consensus 371 dg~~LaSgs~D~tIrl 386 (389)
+|..||=.+.|.+|-+
T Consensus 217 sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVSF 232 (361)
T ss_pred CCCEeeEecCCCceEE
Confidence 9999999999999865
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.05 E-value=7e-09 Score=107.15 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=147.2
Q ss_pred eCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCC-C
Q 016446 54 KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-N 132 (389)
Q Consensus 54 pdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~-~ 132 (389)
|-++++|. .+.| ..+++|+...+++ ..+|- |.- +.+.-++.-.|.|. .
T Consensus 3 ~~~~~~A~----~~~~------g~l~iw~t~~~~~----------------~~e~~-p~~----~~s~t~~~~~w~L~~~ 51 (541)
T KOG4547|consen 3 PALDYFAL----STGD------GRLRIWDTAKNQL----------------QQEFA-PIA----SLSGTCTYTKWGLSAD 51 (541)
T ss_pred chhheEee----cCCC------CeEEEEEccCcee----------------eeeec-cch----hccCcceeEEEEEEec
Confidence 33566666 4456 7788999888874 25665 643 34556788899864 3
Q ss_pred CeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe--ecCCceeEEEEEecCCCeEEEEeCCCc
Q 016446 133 YTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENEN 209 (389)
Q Consensus 133 g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s~D~t 209 (389)
+.|+....-.++ ..-| +-.+|+-+.. .+.|-+.++..|+.-.+|. .|-++|.++... ..-+.|-+++.|+.
T Consensus 52 ~s~~k~~~~~~~--~~~s~~t~~lvlgt~---~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~ 125 (541)
T KOG4547|consen 52 YSPMKWLSLEKA--KKASLDTSMLVLGTP---QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLK 125 (541)
T ss_pred cchHHHHhHHHH--hhccCCceEEEeecC---CccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCcee
Confidence 335433321111 1112 2223333221 2578888999999999998 677888888876 45678889999999
Q ss_pred EEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC----
Q 016446 210 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD---- 284 (389)
Q Consensus 210 IklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd---- 284 (389)
+-.|+.+++..+....+.+..+.+++.+|||..|++++ ++||+||++ +|.+.+|+||.++ |+++.|.-+
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~-----v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 126 VVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSP-----VRTLSFTTLIDGI 199 (541)
T ss_pred EEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcc-----eEEEEEEEecccc
Confidence 99999999999999999999999999999999998775 789999997 9999999999998 799999988
Q ss_pred -CCEEEEEe
Q 016446 285 -QDLIISYC 292 (389)
Q Consensus 285 -G~~laS~s 292 (389)
|+++.|+.
T Consensus 200 ~G~~vLssa 208 (541)
T KOG4547|consen 200 IGKYVLSSA 208 (541)
T ss_pred ccceeeecc
Confidence 88888853
No 258
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=1.6e-09 Score=109.87 Aligned_cols=281 Identities=13% Similarity=0.111 Sum_probs=199.8
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeC--CCEEEEEEEeecCCCcceeeeeeeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spd--g~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
-|--|.|- |+.+++++.|..|-+||-.+++....+..+|.+-|.---|=|+ -++|++. +.| .++++
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~----s~d------gqvr~ 213 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS----SRD------GQVRV 213 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec----ccc------Cceee
Confidence 35556676 9999999999999999988888877777777666555556666 5678884 455 67766
Q ss_pred eEe-ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--c--C-C---cEEEEEEcC
Q 016446 81 EYI-RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--S--D-K---HVQEIKISP 151 (389)
Q Consensus 81 ~~i-~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~--~-~---~V~~vafS~ 151 (389)
-.+ .+|.+..+..+-.++- ++.-++--|..-.-+.|++.|+.++=.|+.++.+...+ . . . ...+++..|
T Consensus 214 s~i~~t~~~e~t~rl~~h~g--~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEG--PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeccccceecceecccccC--ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 665 6676655555655443 33344443223356889999999999999877754333 2 1 2 457788876
Q ss_pred --CceEEEEecCCCCeeEEEEEcCCCe------EEEEEe-ecC-----CceeEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 016446 152 --GIMLLIFNRSSSHVPLKILSIEDGT------VLKVFY-HLL-----HRNKKVDFIEQFNEKLLVKQENENLQILDVRN 217 (389)
Q Consensus 152 --g~~la~~~~~s~d~tiklWd~~tG~------~l~tl~-~~~-----~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t 217 (389)
-..+|++ +.|..+|++|...=+ .+.+|. .|. -.|..++|+ .++.-|+++-.|.-|.|.+-.-
T Consensus 292 ~nt~~faVg---G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-h~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 292 RNTNEFAVG---GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-HDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred CCccccccC---ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec-CCccceeeeecccceEEecccc
Confidence 3366664 667899999865311 223332 221 245788887 5678899999999999996543
Q ss_pred --C----------eEE-EEcccCCC--ceEEEEE-cCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEE
Q 016446 218 --A----------ELM-EVSRTEFM--TPSAFIF-LYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 279 (389)
Q Consensus 218 --g----------~~~-~~l~gh~~--~v~sv~f-spdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv 279 (389)
| ..+ ++.+||.. .|..|-| -|...+++||| -|.|-||+.. |++++-|+|-.. + |+++
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-V----VNCL 442 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-V----VNCL 442 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-e----Eecc
Confidence 3 222 33788865 5667766 69999999999 7999999997 999999998665 3 8999
Q ss_pred EECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 280 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 280 ~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
.=.|-=-.|||.+-| ..||||--.+-+
T Consensus 443 EpHP~~PvLAsSGid-----------~DVKIWTP~~~e 469 (559)
T KOG1334|consen 443 EPHPHLPVLASSGID-----------HDVKIWTPLTAE 469 (559)
T ss_pred CCCCCCchhhccCCc-----------cceeeecCCccc
Confidence 999999999997664 799999865433
No 259
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.04 E-value=3.4e-06 Score=79.74 Aligned_cols=217 Identities=14% Similarity=0.142 Sum_probs=146.7
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~ 182 (389)
.+++|.+.+|.++.+.-..++|.-|+..+++... +.......+++. +++.|+.+... .+.+.|+.+|+....+.
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~~~G~~~~~~~g~l~v~~~~----~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPGPNGMAFDRPDGRLYVADSG----GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSSEEEEEEECTTSEEEEEETT----CEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCCCceEEEEccCCEEEEEEcC----ceEEEecCCCcEEEEee
Confidence 5688983389999998899999999998877532 222227888888 76777666543 45666999997655554
Q ss_pred e-----cCCceeEEEEEecCCCeEEEEeCC--------CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEE-EEc-
Q 016446 183 H-----LLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL-TFR- 247 (389)
Q Consensus 183 ~-----~~~~~~~v~f~~~~~~~l~~~s~D--------~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~la-S~s- 247 (389)
. .....+.+++. ++|...++.... +.|-.++.. +++..... .....+.++|+|||+.|. +-+
T Consensus 78 ~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence 3 23445888887 556655554322 456777776 66555443 456789999999998665 556
Q ss_pred CCeEEEEeCC--Cc-E-----EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 248 NRTVAVWNFR--GE-L-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 248 D~tIklWd~~--G~-~-----l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
.+.|.-++++ +. + +..+.+-.. ..-.+++.++|++.++... .+.|...|.. |+.+
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-----~pDG~~vD~~G~l~va~~~-----------~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPG-----YPDGLAVDSDGNLWVADWG-----------GGRIVVFDPD-GKLL 217 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSC-----EEEEEEEBTTS-EEEEEET-----------TTEEEEEETT-SCEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCc-----CCCcceEcCCCCEEEEEcC-----------CCEEEEECCC-ccEE
Confidence 8888888874 33 2 222222211 1358999999999887543 2799999955 9999
Q ss_pred EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEE-CCCCCEEEEec
Q 016446 320 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-DEERNEIYTGN 379 (389)
Q Consensus 320 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svaf-Spdg~~LaSgs 379 (389)
..+.--. ..+++++| -||.++|+-.+
T Consensus 218 ~~i~~p~----------------------------------~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 218 REIELPV----------------------------------PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEE-SS----------------------------------SSEEEEEEESTTSSEEEEEE
T ss_pred EEEcCCC----------------------------------CCEEEEEEECCCCCEEEEEe
Confidence 8886543 47999999 58888776544
No 260
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=9.6e-10 Score=112.82 Aligned_cols=170 Identities=12% Similarity=0.135 Sum_probs=129.3
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCceEEEEEcC--CCcEEEEEc-CCeEE
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLY--ENQLFLTFR-NRTVA 252 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~v~sv~fsp--dg~~laS~s-D~tIk 252 (389)
..+.|+||++.|+.++|+ .+|+.|++||.|-.+-|||.-..++++.+ .||..-|.++.|.| +.++++||. |..||
T Consensus 42 lE~eL~GH~GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeec-CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 346789999999999998 67999999999999999999887776654 79999999999988 577899998 99999
Q ss_pred EEeCCC-----------cEEEEeccCcCCcCCCCeeEEEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEE
Q 016446 253 VWNFRG-----------ELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCL 319 (389)
Q Consensus 253 lWd~~G-----------~~l~tl~gh~~~~~~~~v~sv~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l 319 (389)
|.|++. +..+.+..|... |..+|--|+| ...-|+|+ |||||=.|+.. -.|-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~r-----VKria~~p~~PhtfwsasE-----------DGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDR-----VKRIATAPNGPHTFWSASE-----------DGTIRQYDIREPHVCN 184 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhh-----hhheecCCCCCceEEEecC-----------CcceeeecccCCccCC
Confidence 999851 234456677776 6888888988 77777765 59999999873 1222
Q ss_pred EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEcc
Q 016446 320 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWS 388 (389)
Q Consensus 320 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~ 388 (389)
.....|+ .+++-.++ +-...+++.||.. .+||-|+.|--+||+|
T Consensus 185 p~~~~~~------------------------~l~ny~~~-lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 185 PDEDCPS------------------------ILVNYNPQ-LIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred ccccccH------------------------HHHHhchh-hheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 2222222 11111111 1246789999977 6899999999999987
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=2.5e-07 Score=95.50 Aligned_cols=309 Identities=15% Similarity=0.232 Sum_probs=198.9
Q ss_pred EEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCc----ceeeeeeeEeE
Q 016446 9 IVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFS----SLKCRSTKIEY 82 (389)
Q Consensus 9 i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~----~l~~~~~~l~~ 82 (389)
+.+| |-+|++- +-+-|.||--++-..++.+ +| -.|.-|-|||.-++|++=|. .... -=..+++.|||
T Consensus 216 v~wSP~GTYL~t~-Hk~GI~lWGG~~f~r~~RF--~H-p~Vq~idfSP~EkYLVT~s~---~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 216 VRWSPKGTYLVTF-HKQGIALWGGESFDRIQRF--YH-PGVQFIDFSPNEKYLVTYSP---EPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred EEecCCceEEEEE-eccceeeecCccHHHHHhc--cC-CCceeeecCCccceEEEecC---CccccCcccCCCceEEEEE
Confidence 4455 7777765 4555679975544444433 45 57899999999999999443 1100 01237899999
Q ss_pred eccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE--EEecCCcEEEEEEcC-CceEEEEe
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKISP-GIMLLIFN 159 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l--~tl~~~~V~~vafS~-g~~la~~~ 159 (389)
|++|.+..+.+.+......|| -+.+| -|++++|--.. .+|-|++...-.++ .+++-..|....+|| ++.||.=.
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP-~frWS-~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWP-IFRWS-HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred ccccchhcceeccCCCccccc-eEEec-cCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 999998544444433344443 36888 79999997665 57889985443332 344457899999998 66666554
Q ss_pred cCCCCe--eEEEEEcCCCeEEEEEeecCCceeEEEEE-ecCCCeEEEEeCC----C------cEEEEECCCCeE-EEEcc
Q 016446 160 RSSSHV--PLKILSIEDGTVLKVFYHLLHRNKKVDFI-EQFNEKLLVKQEN----E------NLQILDVRNAEL-MEVSR 225 (389)
Q Consensus 160 ~~s~d~--tiklWd~~tG~~l~tl~~~~~~~~~v~f~-~~~~~~l~~~s~D----~------tIklWd~~tg~~-~~~l~ 225 (389)
..-.+. ++-|-.+.+++.|++-.- .+|-.+... ...|++|...-.- + .+.|.-++.... +.. -
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nl--fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-v 442 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNL--FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-V 442 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccc--eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-e
Confidence 443332 566788889999988663 344333322 2346677664311 1 233343333322 111 1
Q ss_pred cCCCceEEEEEcCCCcEEEEEc----CCeEEEEeCC--C---cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 016446 226 TEFMTPSAFIFLYENQLFLTFR----NRTVAVWNFR--G---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~s----D~tIklWd~~--G---~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~ 296 (389)
.-...|-.++|-|.|..++.-+ -.|+..+.++ + +++..|..- . .+.|.|||.|+++|.+.-
T Consensus 443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~-~------~N~vfwsPkG~fvvva~l--- 512 (698)
T KOG2314|consen 443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK-F------ANTVFWSPKGRFVVVAAL--- 512 (698)
T ss_pred ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc-c------cceEEEcCCCcEEEEEEe---
Confidence 2345788899999999987654 4589999875 2 467777652 2 489999999999999865
Q ss_pred cccccCCCCCeEEEEeCCCCeEEEE-ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEE
Q 016446 297 EDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 375 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~tg~~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~L 375 (389)
.|.-|.+...|..-..|..+ ...|- .-+.+.+.|-|+++
T Consensus 513 -----~s~~g~l~F~D~~~a~~k~~~~~eh~-----------------------------------~at~veWDPtGRYv 552 (698)
T KOG2314|consen 513 -----VSRRGDLEFYDTDYADLKDTASPEHF-----------------------------------AATEVEWDPTGRYV 552 (698)
T ss_pred -----cccccceEEEecchhhhhhccCcccc-----------------------------------ccccceECCCCCEE
Confidence 35668899999764344322 12232 45668999999999
Q ss_pred EEecC
Q 016446 376 YTGNR 380 (389)
Q Consensus 376 aSgs~ 380 (389)
+++|.
T Consensus 553 vT~ss 557 (698)
T KOG2314|consen 553 VTSSS 557 (698)
T ss_pred EEeee
Confidence 99985
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=3.1e-08 Score=97.28 Aligned_cols=283 Identities=11% Similarity=0.108 Sum_probs=162.2
Q ss_pred EEEEee--ccEEEEEecCceEEEEecccce-----eeeeeecCCc-----------ceEEEEEEeeCCCEEEEEEEeecC
Q 016446 7 IEIVAA--RDIVFALAHSGVCAAFSRETNR-----RICFLNVSPD-----------EVIRSLFYNKNNDSLITVSVYASD 68 (389)
Q Consensus 7 ~~i~~~--~~~~a~~~~~gtiklW~~~tg~-----~l~tl~~~~~-----------~~v~sv~~spdg~~l~s~s~~~~~ 68 (389)
..|-|. |++||+|..+|.|-++.++.-. ..-+++-|.- +.|+.|.+-++++.--. -..+.
T Consensus 29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F--LlstN 106 (433)
T KOG1354|consen 29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF--LLSTN 106 (433)
T ss_pred eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE--EEecC
Confidence 345555 9999999999999999875422 2334444321 24889999998772111 11346
Q ss_pred CCcceeeeeeeEeEeccCCCCC--cceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE-EEecCCcEE
Q 016446 69 NFSSLKCRSTKIEYIRRGKPDS--GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISDKHVQ 145 (389)
Q Consensus 69 d~~~l~~~~~~l~~i~~g~~~~--~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l-~tl~~~~V~ 145 (389)
| +++++|-+.....-. ..... ....+.+.++.. .+-+..|-.|-. ..+.+ ...|...|.
T Consensus 107 d------ktiKlWKi~er~~k~~~~~~~~-~~~~~~~~~lr~-------p~~~~~~~~vea----~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 107 D------KTIKLWKIRERGSKKEGYNLPE-EGPPGTITSLRL-------PVEGRHDLEVEA----SPRRVYANAHTYHIN 168 (433)
T ss_pred C------cceeeeeeeccccccccccccc-cCCCCccceeec-------eeeccccceeee----eeeeeccccceeEee
Confidence 6 566666553322100 00000 111111222211 111112222210 11111 122445788
Q ss_pred EEEEc-CCceEEEEecCCCCeeEEEEEcC-CCeEEEEE-------eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC
Q 016446 146 EIKIS-PGIMLLIFNRSSSHVPLKILSIE-DGTVLKVF-------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 216 (389)
Q Consensus 146 ~vafS-~g~~la~~~~~s~d~tiklWd~~-tG~~l~tl-------~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~ 216 (389)
++.++ |+++++++ +|-.|-||+++ +-++.... +..+.-+.+..|+|..--.++-++.-|+|||-|++
T Consensus 169 SIS~NsD~Et~lSA----DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 169 SISVNSDKETFLSA----DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred eeeecCccceEeec----cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 88888 78887654 35688888876 22333221 11122245666764333455557888999999998
Q ss_pred CCe-EE---EEc------------ccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC--CcEEEEeccCcC--------C
Q 016446 217 NAE-LM---EVS------------RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFEDHLL--------W 270 (389)
Q Consensus 217 tg~-~~---~~l------------~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~--G~~l~tl~gh~~--------~ 270 (389)
... |. +.+ .+--..|..|-||+.|++++|=.=-||||||++ .+.+.|..-|.. .
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY 324 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY 324 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence 432 21 111 222346888999999999987666899999984 777777776653 1
Q ss_pred cCCC--CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe-EEEEecC
Q 016446 271 HPDC--NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINA 324 (389)
Q Consensus 271 ~~~~--~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~-~l~tl~g 324 (389)
..|| .-..++||-|+.++++||-. +-.|++++..|. .-.++.+
T Consensus 325 EnD~IfdKFec~~sg~~~~v~TGsy~-----------n~frvf~~~~gsk~d~tl~a 370 (433)
T KOG1354|consen 325 ENDAIFDKFECSWSGNDSYVMTGSYN-----------NVFRVFNLARGSKEDFTLEA 370 (433)
T ss_pred hccchhheeEEEEcCCcceEeccccc-----------ceEEEecCCCCcceeecccc
Confidence 1112 12568899999999999864 689999976654 2344444
No 263
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=9.2e-09 Score=101.44 Aligned_cols=158 Identities=11% Similarity=0.151 Sum_probs=112.8
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCceEEEEEcCCCcE-E
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQL-F 243 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~v~sv~fspdg~~-l 243 (389)
.+++|. .-+|+-+.-|+ |+ -.++++..|-+||++|-.. .|...| ..-+..|.+++|-|.+.. |
T Consensus 92 ~vt~ws---~~dlr~~aWhq-H~----------~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsasel 156 (445)
T KOG2139|consen 92 DVTLWS---EIDLRGVAWHQ-HI----------IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASEL 156 (445)
T ss_pred hhhhhh---hcceeeEeech-hh----------hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCccee
Confidence 356665 24566665553 22 2344456899999999987 443333 334567999999997665 4
Q ss_pred EEEcCCeEEEEeCCCcE-------------EEEe--ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 244 LTFRNRTVAVWNFRGEL-------------VTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 244 aS~sD~tIklWd~~G~~-------------l~tl--~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
|-|.-+-|-||..+-.+ .+.| .||. .|.++.+.|||..|+++|.+ |..|
T Consensus 157 avgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~------pVtsmqwn~dgt~l~tAS~g----------sssi 220 (445)
T KOG2139|consen 157 AVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHN------PVTSMQWNEDGTILVTASFG----------SSSI 220 (445)
T ss_pred eeeecceeEEEEcCcccccccccccccccchhheeCCCCc------eeeEEEEcCCCCEEeecccC----------cceE
Confidence 44457788899864221 1222 2442 28999999999999999987 5899
Q ss_pred EEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 309 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 309 klWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+|||+.+|+++.-.. -. +..+.-|-|||||..|..+.-|++.+||+
T Consensus 221 ~iWdpdtg~~~pL~~-~g---------------------------------lgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 221 MIWDPDTGQKIPLIP-KG---------------------------------LGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred EEEcCCCCCcccccc-cC---------------------------------CCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 999999999874441 11 13788899999999999999999999994
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=4.5e-07 Score=93.67 Aligned_cols=286 Identities=14% Similarity=0.194 Sum_probs=164.1
Q ss_pred EEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccC
Q 016446 8 EIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 86 (389)
Q Consensus 8 ~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g 86 (389)
...++ +..+++.+.++.+++++..++..+.+.... -++.+-|||-|.+|.+==..+..+=.+-..-.+.+|++.+|
T Consensus 39 v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~ 115 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG 115 (566)
T ss_pred eEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCCceeeeeeccc
Confidence 34445 667888888999999999888544444432 57999999999998761100000002222345557888775
Q ss_pred CCCCcceeEeee-cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEecCCcEEEEEEcCC---ceEEEEe--
Q 016446 87 KPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKHVQEIKISPG---IMLLIFN-- 159 (389)
Q Consensus 87 ~~~~~~~l~~~~-~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~~~~V~~vafS~g---~~la~~~-- 159 (389)
...+. ++.- .-+ +...|+ +|..+.| ==..+.+.++++.+-+ ....|+...|..+++||| -.+|+--
T Consensus 116 ~~~s~---~q~k~Q~~--W~~qfs-~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 116 VQRSQ---IQKKMQNG--WVPQFS-IDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eehhh---eehhhhcC--cccccc-cchhhhh-hhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 44211 0000 111 134444 3332111 1112344444443322 223333334444444433 1111110
Q ss_pred ------------------------------------------------cCCCC---------eeEEEEEcCCCeEEEEEe
Q 016446 160 ------------------------------------------------RSSSH---------VPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 160 ------------------------------------------------~~s~d---------~tiklWd~~tG~~l~tl~ 182 (389)
+..-| .++.+.++++-.|.-.|.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 01111 356666665444555554
Q ss_pred ecCCceeEEEEEecCCCeEEE--EeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc----CCeEEEEeC
Q 016446 183 HLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNF 256 (389)
Q Consensus 183 ~~~~~~~~v~f~~~~~~~l~~--~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s----D~tIklWd~ 256 (389)
. .++|.+|.|+ +++..+++ |-.=.++-|+|++ |..+..+ -+++-+.+-|+|.|++|+-++ -|.|.+||+
T Consensus 269 k-~GPVhdv~W~-~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 269 K-EGPVHDVTWS-PSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred C-CCCceEEEEC-CCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 2 4789999998 55655555 4478899999984 4444433 234567788999999988664 589999999
Q ss_pred C-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 257 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 257 ~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
. -+++..++.-. -.-..|+|||++++++... |-- =-|+.||||+. +|..+..
T Consensus 344 ~n~K~i~~~~a~~-------tt~~eW~PdGe~flTATTa-PRl----rvdNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 344 PNRKLIAKFKAAN-------TTVFEWSPDGEYFLTATTA-PRL----RVDNGIKIWHY-TGSLLHE 396 (566)
T ss_pred cchhhccccccCC-------ceEEEEcCCCcEEEEEecc-ccE----EecCCeEEEEe-cCceeeh
Confidence 5 78888887532 2457899999999998742 000 03688999995 5877643
No 265
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.94 E-value=4.7e-06 Score=85.02 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=130.0
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEE-EE--ec------C-------CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCC
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTML-YS--IS------D-------KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED 174 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l-~t--l~------~-------~~V~~vafS~g~~la~~~~~s~d~tiklWd~~t 174 (389)
.||+.++- +.-|.|.++|.++-++- .. |. . ......+.++|.++|.-+.+ .+-|-+...
T Consensus 276 sDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG----kaFi~~~~~ 350 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG----KAFIMRPWD 350 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC----cEEEECCCC
Confidence 47887774 45678999998765521 11 11 0 11233455589999876544 566666555
Q ss_pred CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCC-cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 175 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE-NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 175 G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~-tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
|-.++. +|.+.|+=..+. .+++..+.|-.|+ .+-|+|..+|+..+ +++.-..|.++..+|||+.++.+. ...|-
T Consensus 351 ~~~iqv--~~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 351 GYSIQV--GKKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred CeeEEc--CCCCceEEEEEc-cCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 666655 345667777775 5678888898888 99999999888644 456677899999999999999988 55777
Q ss_pred EEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEE
Q 016446 253 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 320 (389)
Q Consensus 253 lWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~ 320 (389)
+.|++ |.....=+...+. |...++||++++||=+-.+ +---+.|||.|+.+|+...
T Consensus 427 vididngnv~~idkS~~~l-----Itdf~~~~nsr~iAYafP~-------gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGL-----ITDFDWHPNSRWIAYAFPE-------GYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred EEEecCCCeeEecccccce-----eEEEEEcCCceeEEEecCc-------ceeeeeEEEEecCCCeEEE
Confidence 77886 7642211111222 7899999999999966432 2233689999999888643
No 266
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.94 E-value=1.9e-09 Score=72.95 Aligned_cols=39 Identities=26% Similarity=0.646 Sum_probs=37.2
Q ss_pred CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 316 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 316 g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
|+|++++++|+ ..|++|+|+|+++.|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~----------------------------------~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHS----------------------------------SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSS----------------------------------SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCC----------------------------------CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 68999999998 6999999999999999999999999997
No 267
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.91 E-value=2.5e-06 Score=79.07 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=134.5
Q ss_pred CCCeEEEEeCCCCeEEEEecC----CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec
Q 016446 121 QDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 196 (389)
Q Consensus 121 ~D~tiklWdl~~g~~l~tl~~----~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~ 196 (389)
.+++|..||+.+|+.+.+..- ......++.+++++.+++ .++.+..||+.||+.+.++... ..+..... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~--~ 74 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDLP-GPISGAPV--V 74 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE---TTSEEEEEETTTSEEEEEEECS-SCGGSGEE--E
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc---CCCEEEEEECCCCCEEEEeecc-ccccceee--e
Confidence 378999999999999876641 222222443555665553 4479999999999999888742 32222112 3
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCC---CceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCC
Q 016446 197 FNEKLLVKQENENLQILDVRNAELMEVS-RTEF---MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 270 (389)
Q Consensus 197 ~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~---~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~ 270 (389)
.++.++....|+.|..+|.++|+.+... .... ......+...++..++.+. ++.|...|+. |+++.....+...
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 4778888888899999999999998773 3221 1112223333366666666 9999999986 9998877764422
Q ss_pred cCC-----CCeeEEEECCCCCEEEEEecCCCcccccCCCCC-eEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcc
Q 016446 271 HPD-----CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG-SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 344 (389)
Q Consensus 271 ~~~-----~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~-tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~ 344 (389)
... ..+..-.+..+|..+++ +. ++ .+.+ |+.+|+.+....-+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~-----------~g~~~~~-d~~tg~~~w~~~~~------------------- 202 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDGRVYVS-SG-----------DGRVVAV-DLATGEKLWSKPIS------------------- 202 (238)
T ss_dssp SS--EEEETTEEEEEECCTTEEEEE-CC-----------TSSEEEE-ETTTTEEEEEECSS-------------------
T ss_pred CCcceeeecccccceEEECCEEEEE-cC-----------CCeEEEE-ECCCCCEEEEecCC-------------------
Confidence 100 00122233335644444 32 24 5888 99999977544311
Q ss_pred ccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 345 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+.. ...+++..|+.++.|+.|..||
T Consensus 203 -----------------~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 203 -----------------GIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp ------------------ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred -----------------CccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 2222 2568888999999999999987
No 268
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.88 E-value=2.1e-07 Score=90.71 Aligned_cols=195 Identities=10% Similarity=0.112 Sum_probs=149.9
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe---EEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEc-C
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSI-E 173 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~---~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~-~ 173 (389)
..|..-||+ +|++.+|.+-....|-|+.....+ +.++|+ ...|..|.++| ..+|.++ +.|....+|.. .
T Consensus 11 ~pitchAwn-~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc---s~drnayVw~~~~ 86 (361)
T KOG1523|consen 11 EPITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC---SHDRNAYVWTQPS 86 (361)
T ss_pred Cceeeeeec-CCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc---cCCCCccccccCC
Confidence 345678997 899999999999999999875544 567776 45799999995 7788776 55688999998 5
Q ss_pred CCeEEEEEe--ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE----EEEcccCCCceEEEEEcCCCcEEEEEc
Q 016446 174 DGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 174 tG~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~----~~~l~gh~~~v~sv~fspdg~~laS~s 247 (389)
.|+=-.+|. -+-.....|.++ |-..+++.+|.-+.|-+|-.+..+- .++-+.+...|.++.|.|++-+||.|+
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 555333332 344677899998 6688999999999999998865442 223345677899999999999999999
Q ss_pred -CCeEEEEe------------------CC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 248 -NRTVAVWN------------------FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 248 -D~tIklWd------------------~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
|+..|+.. +- |+++..+....+| |..|.|||+|..||=.+.| .+
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggw-----vh~v~fs~sG~~lawv~Hd-----------s~ 229 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGW-----VHGVLFSPSGNRLAWVGHD-----------ST 229 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCc-----eeeeEeCCCCCEeeEecCC-----------Cc
Confidence 99999985 22 5555555444455 7999999999999987654 78
Q ss_pred EEEEeCCCC
Q 016446 308 INVSSILTG 316 (389)
Q Consensus 308 IklWd~~tg 316 (389)
+.+=|....
T Consensus 230 v~~~da~~p 238 (361)
T KOG1523|consen 230 VSFVDAAGP 238 (361)
T ss_pred eEEeecCCC
Confidence 988885533
No 269
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=2.5e-07 Score=95.76 Aligned_cols=256 Identities=9% Similarity=0.100 Sum_probs=171.9
Q ss_pred EEee--ccE-EEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc
Q 016446 9 IVAA--RDI-VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 85 (389)
Q Consensus 9 i~~~--~~~-~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~ 85 (389)
|-.+ |++ +|++-+--.||+||+. .--|++=..-.++.|.=.-+|-|-..++. --.| +.|.+.. .-
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydla-nLSLKFERhlDae~V~feiLsDD~SK~v~----L~~D------R~IefHa-k~ 124 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLA-NLSLKFERHLDAEVVDFEILSDDYSKSVF----LQND------RTIEFHA-KY 124 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEcc-cceeeeeecccccceeEEEeccchhhheE----eecC------ceeeehh-hc
Confidence 4445 554 6788899999999995 55565444334455555555544332222 2233 3332221 22
Q ss_pred CCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCC
Q 016446 86 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSS 162 (389)
Q Consensus 86 g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s 162 (389)
|.- .+.++ -.+| +.++++.|.-.++.-|+.. .|.-.+|+.|+-|..+. ...++.|.+++ .+.||++ .
T Consensus 125 G~h-y~~RI---P~~G--RDm~y~~~scDly~~gsg~-evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~G---t 194 (703)
T KOG2321|consen 125 GRH-YRTRI---PKFG--RDMKYHKPSCDLYLVGSGS-EVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACG---T 194 (703)
T ss_pred Cee-eeeec---CcCC--ccccccCCCccEEEeecCc-ceEEEEccccccccccccccccceeeeecCccceEEec---c
Confidence 321 11111 1122 3477777777666655554 45556999999888876 47899999996 6667654 4
Q ss_pred CCeeEEEEEcCCCeEEEEEeecC------C-----ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCc
Q 016446 163 SHVPLKILSIEDGTVLKVFYHLL------H-----RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMT 230 (389)
Q Consensus 163 ~d~tiklWd~~tG~~l~tl~~~~------~-----~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~ 230 (389)
.++.|..||..+-....+|.... + .+.++.|. .+|=.++.|..+|.|-|+|+++.+++..- .+...+
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-DDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec-CCceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence 46899999999877777775321 2 27888886 34567777889999999999998876652 334457
Q ss_pred eEEEEEcCC--CcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 231 PSAFIFLYE--NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 231 v~sv~fspd--g~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
+..+.|.+. +..++|.....+||||-. |+....++.-.. ++.++|-|++-++..|-.
T Consensus 274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~------lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSD------LNDFCFVPGSGMFFTANE 333 (703)
T ss_pred eeeecccccCCCceEEecchHHhhhcccccCCceeeccccCC------cCceeeecCCceEEEecC
Confidence 888889765 556777767899999996 998888875433 689999999999998754
No 270
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.86 E-value=1.4e-05 Score=81.10 Aligned_cols=272 Identities=13% Similarity=0.113 Sum_probs=157.9
Q ss_pred EEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEE----------EEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 9 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIR----------SLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 9 i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~----------sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
.++.++.|.+.+.+|.+..+|.+||+.+=..+......+. +++. ++..|+. +..+ ..+
T Consensus 65 Pvv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v----~~~~------g~l 132 (394)
T PRK11138 65 PAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYI----GSEK------GQV 132 (394)
T ss_pred cEEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEE----EcCC------CEE
Confidence 3556888999999999999999999988655433210000 1111 2344444 3344 455
Q ss_pred eEeEeccCCCCCcceeEeeecccCcee-EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCC-cE------EEEEEc
Q 016446 79 KIEYIRRGKPDSGFALFESESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-HV------QEIKIS 150 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~~~~~~~~~~-v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~-~V------~~vafS 150 (389)
.-.|..+|+. +|.....+.+.+ -... ++++++ +..++.+.-.|+++|+.+...... .. .+-++.
T Consensus 133 ~ald~~tG~~-----~W~~~~~~~~~ssP~v~--~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~ 204 (394)
T PRK11138 133 YALNAEDGEV-----AWQTKVAGEALSRPVVS--DGLVLV-HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA 204 (394)
T ss_pred EEEECCCCCC-----cccccCCCceecCCEEE--CCEEEE-ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence 5567788987 665333232222 1222 565554 667899999999999998776521 11 111222
Q ss_pred CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCc-------eeEEEEEe-cCCCeEEEEeCCCcEEEEECCCCeEEE
Q 016446 151 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR-------NKKVDFIE-QFNEKLLVKQENENLQILDVRNAELME 222 (389)
Q Consensus 151 ~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~-------~~~v~f~~-~~~~~l~~~s~D~tIklWd~~tg~~~~ 222 (389)
++ .+..+. .++.+.-.|.++|+.+...+..... ...+...| ..++.+.+++.++.+...|+++|+.+-
T Consensus 205 ~~-~v~~~~---~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W 280 (394)
T PRK11138 205 FG-GAIVGG---DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW 280 (394)
T ss_pred CC-EEEEEc---CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE
Confidence 23 343432 3467888899999988765421110 01111111 136778888899999999999998765
Q ss_pred EcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 223 VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 223 ~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
...- .....++. .++++++...|+.+...|.. |+.+-....-.... ..+.++ -+|. |..++.
T Consensus 281 ~~~~--~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~sp~v-~~g~-l~v~~~-------- 343 (394)
T PRK11138 281 KREY--GSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL----LTAPVL-YNGY-LVVGDS-------- 343 (394)
T ss_pred eecC--CCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc----ccCCEE-ECCE-EEEEeC--------
Confidence 4321 11112222 34555554458999999986 87654332111110 112222 1444 455544
Q ss_pred CCCCCeEEEEeCCCCeEEEEecC
Q 016446 302 EGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 302 ~s~D~tIklWd~~tg~~l~tl~g 324 (389)
||.|...|..+|+.+...+-
T Consensus 344 ---~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 344 ---EGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred ---CCEEEEEECCCCCEEEEEEc
Confidence 59999999999999887754
No 271
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=3.8e-08 Score=98.03 Aligned_cols=179 Identities=13% Similarity=0.125 Sum_probs=113.5
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
|.-.-|..+.+..+.+|+..+. +.....++++++-+.... .-.......|+|+.... . ..-.++
T Consensus 50 ~~~~~~~~s~~~~~a~~~~~~s------~~~~llAv~~~~K~~~~f-~~~~~~~~~kl~~~~~v------~---~~~~ai 113 (390)
T KOG3914|consen 50 DKGEEAKASEILSLAPALVLTS------DSGRLVAVATSSKQRAVF-DYRENPKGAKLLDVSCV------P---KRPTAI 113 (390)
T ss_pred ccccchhhhhhhhccccccccC------CCceEEEEEeCCCceEEE-EEecCCCcceeeeEeec------c---cCccee
Confidence 3334444555556666664210 123455666664332111 11222234566654221 1 333566
Q ss_pred EEEecCCCeEEE--EeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc-EEEEe-cc
Q 016446 192 DFIEQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE-LVTSF-ED 266 (389)
Q Consensus 192 ~f~~~~~~~l~~--~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~-~l~tl-~g 266 (389)
.|...+-..+++ +++...+.+|.+..|.++- +-||-..+..|+++||++.++++. |..||+=...+. -+.+| -|
T Consensus 114 ~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG 192 (390)
T KOG3914|consen 114 SFIREDTSVLVADKAGDVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG 192 (390)
T ss_pred eeeeccceEEEEeecCCceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc
Confidence 665433333333 3688999999988755544 468999999999999999999998 999998776432 23332 38
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
|... |..++.-|+ +.|+|||.| +|||+||+.+|+++.++.-
T Consensus 193 H~eF-----VS~isl~~~-~~LlS~sGD-----------~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 193 HKEF-----VSTISLTDN-YLLLSGSGD-----------KTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred cHhh-----eeeeeeccC-ceeeecCCC-----------CcEEEEecccCCcccccch
Confidence 9887 788887664 568998764 8999999999999977743
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.85 E-value=1.1e-06 Score=90.20 Aligned_cols=291 Identities=10% Similarity=0.047 Sum_probs=178.2
Q ss_pred cCceEEE-EecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeec
Q 016446 21 HSGVCAA-FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 99 (389)
Q Consensus 21 ~~gtikl-W~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~ 99 (389)
.+..+.+ |+.+ .....+........+..+.+||.|.+|++ .+. ..|.+|+-..+.. |-. ..
T Consensus 9 ~s~~i~~f~~~~-s~~~~~~~~~~~~p~~~~~~SP~G~~l~~------~~~-----~~V~~~~g~~~~~-----l~~-~~ 70 (561)
T COG5354 9 YSAVISVFWNSQ-SEVIHTRFESENWPVAYVSESPLGTYLFS------EHA-----AGVECWGGPSKAK-----LVR-FR 70 (561)
T ss_pred ccceEEEeecCc-cccccccccccCcchhheeecCcchheeh------hhc-----cceEEccccchhh-----eee-ee
Confidence 3444444 6654 44555555545578999999999999988 222 4455555433221 111 12
Q ss_pred ccCceeEEEecCCCeEEEEecCC---------------CeEEEEeCCCCeEEEEecC--C--cEE-EEEEc-CCceEEEE
Q 016446 100 LKWPGFVEFDDVNGKVLTYSAQD---------------SIYKVFDLKNYTMLYSISD--K--HVQ-EIKIS-PGIMLLIF 158 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s~D---------------~tiklWdl~~g~~l~tl~~--~--~V~-~vafS-~g~~la~~ 158 (389)
...+..+.|| |+|++|.+=+.. ..+.+||.++|..++++.. . -.| -+.|| ++.++|--
T Consensus 71 ~~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 71 HPDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred cCCceecccC-cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence 2346789998 999999987753 3599999999999998863 2 255 68899 66655433
Q ss_pred ecCCCCeeEEEEEcCCCeEE----EEEeecCCceeEEEEEec-CCCeEEE-----EeCCCcEEEEECCCCeEEEEcccCC
Q 016446 159 NRSSSHVPLKILSIEDGTVL----KVFYHLLHRNKKVDFIEQ-FNEKLLV-----KQENENLQILDVRNAELMEVSRTEF 228 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l----~tl~~~~~~~~~v~f~~~-~~~~l~~-----~s~D~tIklWd~~tg~~~~~l~gh~ 228 (389)
. + ..+++.++ |+..- ++|+ ..++..-.++|- ++..|+. +..+++++||.+-.+..+.+-.=-.
T Consensus 150 v-~---~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk 222 (561)
T COG5354 150 V-G---SSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK 222 (561)
T ss_pred c-c---CeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe
Confidence 1 2 36888886 44322 2222 134455555532 1223333 3588999999998766655411111
Q ss_pred CceEEEEEcCCCcEEEEE------------cCCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 016446 229 MTPSAFIFLYENQLFLTF------------RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~------------sD~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~ 296 (389)
..=-.+-|.+.|++|..= +..++.|.++++.-+....+-.++ |.+.+|+|+++..+..+
T Consensus 223 ~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~p-----Vhdf~W~p~S~~F~vi~---- 293 (561)
T COG5354 223 VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDP-----VHDFTWEPLSSRFAVIS---- 293 (561)
T ss_pred ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecccccc-----ceeeeecccCCceeEEe----
Confidence 111235567888876521 135677778775433333233444 78999999999887765
Q ss_pred cccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE
Q 016446 297 EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 376 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La 376 (389)
|-.+-++-+.|+. |+...-+.... =..+.|||.+++++
T Consensus 294 -----g~~pa~~s~~~lr-~Nl~~~~Pe~~------------------------------------rNT~~fsp~~r~il 331 (561)
T COG5354 294 -----GYMPASVSVFDLR-GNLRFYFPEQK------------------------------------RNTIFFSPHERYIL 331 (561)
T ss_pred -----cccccceeecccc-cceEEecCCcc------------------------------------cccccccCcccEEE
Confidence 2235789999976 67655554322 23467888888888
Q ss_pred EecCCC---cEEEcc
Q 016446 377 TGNRHG---LVHVWS 388 (389)
Q Consensus 377 Sgs~D~---tIrlW~ 388 (389)
.++.|+ .|-+|+
T Consensus 332 ~agF~nl~gni~i~~ 346 (561)
T COG5354 332 FAGFDNLQGNIEIFD 346 (561)
T ss_pred EecCCccccceEEec
Confidence 877764 455554
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=2.3e-06 Score=82.53 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=30.1
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 140 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~ 140 (389)
-|+|| ||+.+||.+...|+|+++|+ .|..++.++
T Consensus 48 kl~WS-pD~tlLa~a~S~G~i~vfdl-~g~~lf~I~ 81 (282)
T PF15492_consen 48 KLAWS-PDCTLLAYAESTGTIRVFDL-MGSELFVIP 81 (282)
T ss_pred EEEEC-CCCcEEEEEcCCCeEEEEec-ccceeEEcC
Confidence 49998 99999999999999999998 567777775
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.83 E-value=1.1e-08 Score=116.09 Aligned_cols=179 Identities=13% Similarity=0.177 Sum_probs=138.7
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 186 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~ 186 (389)
|--.+-++|++||.||+|.-..++.+..+. ...|..++|+ .|+...++ ..|+.+-+|.+. -+....-+-|..
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~---d~dg~l~l~q~~-pk~~~s~qchnk 2293 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIV---DGDGDLSLWQAS-PKPYTSWQCHNK 2293 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeee---ccCCceeecccC-CcceeccccCCc
Confidence 566788899999999999998888776664 3689999999 89998776 456899999975 355555555655
Q ss_pred ceeEEEEEecCCCeEEEEe---CCCcEEEEECC-C--CeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C
Q 016446 187 RNKKVDFIEQFNEKLLVKQ---ENENLQILDVR-N--AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 258 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~s---~D~tIklWd~~-t--g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G 258 (389)
....+.|. +..+++++ .++.+-+||-- . ..++. ..|...++.+++-|.-|+|+||+ +|-|+|||+. .
T Consensus 2294 ~~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2294 ALSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred cccceeee---ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 66778887 34555543 88999999943 2 23455 68999999999999999999999 9999999996 7
Q ss_pred cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 259 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 259 ~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
++.++++. + . -..++++|+. .|+||||++.+=.+++++..
T Consensus 2369 ql~h~~~~---~-----------~-~~~~f~~~ss-----------~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2369 QLRHTFQA---L-----------D-TREYFVTGSS-----------EGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred HHHHHhhh---h-----------h-hhheeeccCc-----------ccceEEEEccccchhhcCch
Confidence 77766643 1 1 3467777654 59999999988888888764
No 275
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.82 E-value=2.9e-06 Score=83.48 Aligned_cols=207 Identities=15% Similarity=0.141 Sum_probs=137.5
Q ss_pred eEEEecCCCeEEEEecCCCe-EEEEeCCCCeEEEEecC---CcEE-EEEEc-CCceEEEEecC--CCCeeEEEEEcC-CC
Q 016446 105 FVEFDDVNGKVLTYSAQDSI-YKVFDLKNYTMLYSISD---KHVQ-EIKIS-PGIMLLIFNRS--SSHVPLKILSIE-DG 175 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~t-iklWdl~~g~~l~tl~~---~~V~-~vafS-~g~~la~~~~~--s~d~tiklWd~~-tG 175 (389)
.++.+|..+..+|.+-.-|+ ..+||..+|+.+..+.. ..-+ --+|| ||++|.++..+ ...+-|-+||.. +-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 35555225555555554443 45899999998887752 1222 26799 78888876433 234799999998 66
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEE--e-----CCC-----------cEEEEECCCCeEEEE--c--ccCCCceEE
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVK--Q-----ENE-----------NLQILDVRNAELMEV--S--RTEFMTPSA 233 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~--s-----~D~-----------tIklWd~~tg~~~~~--l--~gh~~~v~s 233 (389)
+.+.++..|.-.=.++.+. ||++.|+++ + +.+ .+-+-|..+|++++. | .-|..+++=
T Consensus 89 ~ri~E~~s~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred EEEeEecCCCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 6777777544344788887 778777774 3 223 344568899999887 6 448889999
Q ss_pred EEEcCCCcEEEEEc-CC-------eEEEEeCCCcEEEEeccCcC--CcCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 234 FIFLYENQLFLTFR-NR-------TVAVWNFRGELVTSFEDHLL--WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 234 v~fspdg~~laS~s-D~-------tIklWd~~G~~l~tl~gh~~--~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
+++.++|..+...- .+ -|-+++. |+.++.+..-.. .-...|+-||+|++||.++|..|.-
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr--------- 237 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR--------- 237 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC---------
Confidence 99999998877663 22 2223332 332333332110 0111358999999999999877753
Q ss_pred CCCeEEEEeCCCCeEEEEec
Q 016446 304 SAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 304 ~D~tIklWd~~tg~~l~tl~ 323 (389)
-+.+-+||..+|+++....
T Consensus 238 -Gg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 238 -GGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred -CCEEEEEECCCCCEeeccc
Confidence 4899999999999986654
No 276
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=1.3e-08 Score=68.83 Aligned_cols=38 Identities=11% Similarity=0.242 Sum_probs=36.6
Q ss_pred CeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 218 AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 218 g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
|++++++++|...|++++|+|++++|+|++ |++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 588999999999999999999999999999 99999997
No 277
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=2.7e-05 Score=77.21 Aligned_cols=264 Identities=13% Similarity=0.177 Sum_probs=167.3
Q ss_pred eeeeEeEe--ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecC---CCeEEEEeCC--CCeEEEE----ecCCcE
Q 016446 76 RSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ---DSIYKVFDLK--NYTMLYS----ISDKHV 144 (389)
Q Consensus 76 ~~~~l~~i--~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~---D~tiklWdl~--~g~~l~t----l~~~~V 144 (389)
..|..|++ .+|++...+.+ +..+.|..++|+ |+++.|-++-. ++.|--+.+. +|++.+. +.+..=
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v---~~~~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLV---AELGNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CceEEEEEeCcccccchhhhc---cccCCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 67788887 56766433333 356677889997 89988877654 4666665554 4775422 234444
Q ss_pred EEEEEc-CCceEEEEecCCCCeeEEEEEcCC-CeEEEE--EeecCCc----------eeEEEEEecCCCeEEEEe-CCCc
Q 016446 145 QEIKIS-PGIMLLIFNRSSSHVPLKILSIED-GTVLKV--FYHLLHR----------NKKVDFIEQFNEKLLVKQ-ENEN 209 (389)
Q Consensus 145 ~~vafS-~g~~la~~~~~s~d~tiklWd~~t-G~~l~t--l~~~~~~----------~~~v~f~~~~~~~l~~~s-~D~t 209 (389)
.-|+++ +|+.+.++.-.+ +.|.+.-+++ |.+... +..|.+. +..+.|. |++.++++.. .--.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~--g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t-P~~~~l~v~DLG~Dr 168 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHS--GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT-PDGRYLVVPDLGTDR 168 (346)
T ss_pred eEEEECCCCCEEEEEEccC--ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC-CCCCEEEEeecCCce
Confidence 779999 788888876554 6888888755 544322 1123333 6677776 7777888765 3345
Q ss_pred EEEEECCCCeEEEEcc---cCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCCC--cEEEEeccCcC----CcCCCCeeE
Q 016446 210 LQILDVRNAELMEVSR---TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFRG--ELVTSFEDHLL----WHPDCNTNN 278 (389)
Q Consensus 210 IklWd~~tg~~~~~l~---gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~G--~~l~tl~gh~~----~~~~~~v~s 278 (389)
|.++++..|.+...-. .-....+=++|+|+|++.-.-. ++||-+|..++ ..+..|+-+.. ..-......
T Consensus 169 i~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa 248 (346)
T COG2706 169 IFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA 248 (346)
T ss_pred EEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence 8899999887633211 2234577899999999887776 99999999863 23333332221 000011468
Q ss_pred EEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccc
Q 016446 279 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 357 (389)
Q Consensus 279 v~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
|.+||||++|-.+-+- ...|-++.+.. |..+..+.-+. +.+
T Consensus 249 Ihis~dGrFLYasNRg----------~dsI~~f~V~~~~g~L~~~~~~~----------------------------teg 290 (346)
T COG2706 249 IHISPDGRFLYASNRG----------HDSIAVFSVDPDGGKLELVGITP----------------------------TEG 290 (346)
T ss_pred EEECCCCCEEEEecCC----------CCeEEEEEEcCCCCEEEEEEEec----------------------------cCC
Confidence 9999999999976542 24677776643 23343333222 111
Q ss_pred cccCCEEEEEECCCCCEEEEecCCC-cEEEc
Q 016446 358 EALEDITSLFYDEERNEIYTGNRHG-LVHVW 387 (389)
Q Consensus 358 ~~~~~V~svafSpdg~~LaSgs~D~-tIrlW 387 (389)
..=....|+|.|+.|+.+.+|. .|.+.
T Consensus 291 ---~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 291 ---QFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred ---cCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 2346789999999999999764 45443
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.77 E-value=9.8e-08 Score=95.10 Aligned_cols=158 Identities=15% Similarity=0.234 Sum_probs=111.7
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCC-C---eEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKN-Y---TMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~-g---~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
..+.++ |.|++||.+-.++..-+.++.. . +++.... ...-.++.|- .......+...+.++.+.+|.+..|.+
T Consensus 66 ~~~~~s-~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTS-DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccC-CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 346775 8888888887777766666532 1 2232222 1122233333 334444455667788999999887666
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE-cccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~-l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
+-.+ ||...+..|+++ ||++.|+++-.|+.||+=....--.++. +-||...|..++.-|+- .|+|++ |+|+++||
T Consensus 145 ~~~l-GhvSml~dVavS-~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 145 EPIL-GHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWD 221 (390)
T ss_pred chhh-hhhhhhheeeec-CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEe
Confidence 6555 688889999998 7889999999999999977654333333 46899999999876655 477777 99999999
Q ss_pred CC-CcEEEEec
Q 016446 256 FR-GELVTSFE 265 (389)
Q Consensus 256 ~~-G~~l~tl~ 265 (389)
.. |+++.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 96 99987775
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.76 E-value=6.4e-06 Score=84.09 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=132.4
Q ss_pred EecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC
Q 016446 108 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 186 (389)
Q Consensus 108 Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~ 186 (389)
|+..+|.++|..| .|.+-|-+...|--++..+...|+=..|. ++.-++.+..++ -.+-+.|..+|+.- .+....+
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dg--D~l~iyd~~~~e~k-r~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDG--DKLGIYDKDGGEVK-RIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCC--ceEEEEecCCceEE-EeeCCcc
Confidence 7777899999887 46666777666666666666779999999 666676664443 27889998887654 4455568
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-----CCeEEEEeCC-CcE
Q 016446 187 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-----NRTVAVWNFR-GEL 260 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-----D~tIklWd~~-G~~ 260 (389)
.+.+|..+ ++|.+++++-....|-+.|+.+|+....=+...+-|..++++|+++.+|-+- -+.|||+|+. |+.
T Consensus 403 ~I~av~vs-~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 403 NIEAVKVS-PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ceEEEEEc-CCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 99999998 7788888888889999999999998777677888999999999999999874 4689999998 465
Q ss_pred EE--EeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 261 VT--SFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 261 l~--tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
.. |-.+| -.+=||.|||++|-==
T Consensus 482 y~vTT~ta~--------DfsPaFD~d~ryLYfL 506 (668)
T COG4946 482 YDVTTPTAY--------DFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEecCCccc--------ccCcccCCCCcEEEEE
Confidence 33 32233 2577899999987543
No 280
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=7.8e-08 Score=94.54 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=119.5
Q ss_pred EEecCCcEEEEEEc-C--CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEE
Q 016446 137 YSISDKHVQEIKIS-P--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 213 (389)
Q Consensus 137 ~tl~~~~V~~vafS-~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklW 213 (389)
.+|+...-|++|+| . |-.++ .+.+..|-|=|++||-- +.|. ...-|++..|. ..+..+..|+.+|.|-..
T Consensus 207 ~SlQi~~a~~CawSlni~gyhfs----~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~-~s~nLv~~GcRngeI~~i 279 (425)
T KOG2695|consen 207 CSLQIPKAWSCAWSLNIMGYHFS----VGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFA-GSDNLVFNGCRNGEIFVI 279 (425)
T ss_pred eeecCCcchhhhhhhccceeeec----ccccceeEEEEeecccc-cccc-cchhHHHHHhc-ccCCeeEecccCCcEEEE
Confidence 44544444555666 2 22221 24456788888888632 3333 23567888886 335566668899999999
Q ss_pred ECCCC-----eEEEEcccCCCceEEEEEcC-CCcEEEEEc-CCeEEEEeCC-CcE---EEEeccCcCCcCCCCeeEEEEC
Q 016446 214 DVRNA-----ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GEL---VTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 214 d~~tg-----~~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd~~-G~~---l~tl~gh~~~~~~~~v~sv~fS 282 (389)
|++.+ .|.+.+- |...|.++-... ++|.|.+++ +|+|||||.+ -+| +.+.+||.+.+. =.-+-+.
T Consensus 280 DLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a---~l~~~v~ 355 (425)
T KOG2695|consen 280 DLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA---YLPAHVK 355 (425)
T ss_pred EeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc---ccccccc
Confidence 99865 4555543 778888888777 888888888 9999999997 677 999999976431 1345567
Q ss_pred CCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 283 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 283 pdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
|....++|++.| -..|||.+..|+++.+++-..
T Consensus 356 ~eeg~I~s~GdD-----------cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 356 EEEGSIFSVGDD-----------CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred cccceEEEccCe-----------eEEEEEecccCceeeccCCCC
Confidence 788888887664 799999999999999987543
No 281
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.70 E-value=1.3e-06 Score=86.04 Aligned_cols=219 Identities=10% Similarity=0.094 Sum_probs=147.2
Q ss_pred ccEEEEEecCceEEEEe-cccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc
Q 016446 13 RDIVFALAHSGVCAAFS-RETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 91 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~-~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~ 91 (389)
.+.|.++++|.++|+|- ++.||.-..+..+....+.+..|+++-..|.. +-+. .++.-..+. -.+ .
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~v----g~~n------gtvtefs~s-edf--n 102 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYV----GQDN------GTVTEFALS-EDF--N 102 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEE----EEec------ceEEEEEhh-hhh--h
Confidence 78899999999999997 77789888877766678899999998887766 3233 111111111 111 1
Q ss_pred ceeEee---ecccCceeEEEecCCCeEEEEecCCCeEEEEeC-CCCeEE--EEec---C---CcEEEEEEc-C--CceEE
Q 016446 92 FALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL-KNYTML--YSIS---D---KHVQEIKIS-P--GIMLL 156 (389)
Q Consensus 92 ~~l~~~---~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl-~~g~~l--~tl~---~---~~V~~vafS-~--g~~la 156 (389)
..+|-. .+.+.+..+-|+.| -..+.|.+.|+.+ .|.- +.|..+ +.+. . ..+. ++|= + |+..
T Consensus 103 km~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~fvGd~~gqvt- 178 (404)
T KOG1409|consen 103 KMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDAL-YAFVGDHSGQIT- 178 (404)
T ss_pred hcchhhhhhhhhcceeeEEecCC-ceeEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeE-EEEecccccceE-
Confidence 111211 23333456788854 5678888999887 6653 445543 2221 1 1222 5554 2 2221
Q ss_pred EEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEEcccCCCceEEEE
Q 016446 157 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFI 235 (389)
Q Consensus 157 ~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-~~~l~gh~~~v~sv~ 235 (389)
.+|+-. +.=.++.++.+|.+.+....+- +.++.+.++..|..|-+||+--++- ...+.+|.+-|.++.
T Consensus 179 ---------~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 179 ---------MLKLEQ-NGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred ---------EEEEee-cCCceEEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 234443 4556788999999999999997 4466777788999999999965443 445789999999999
Q ss_pred EcCCCcEEEEEc-CCeEEEEeCCCc
Q 016446 236 FLYENQLFLTFR-NRTVAVWNFRGE 259 (389)
Q Consensus 236 fspdg~~laS~s-D~tIklWd~~G~ 259 (389)
..+--+.|.|.. ||.|.+||.+-+
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhheeeeeccCCCeEEEEeccce
Confidence 988888888888 999999998643
No 282
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=5.5e-08 Score=94.59 Aligned_cols=241 Identities=15% Similarity=0.212 Sum_probs=146.6
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEE----Eec--------------CCcEEEEEEc-CCc---eEEEEe
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLY----SIS--------------DKHVQEIKIS-PGI---MLLIFN 159 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~----tl~--------------~~~V~~vafS-~g~---~la~~~ 159 (389)
+.+|.|. ..|.+||+|.-.|-|-++.-+... |-+ .++ .+.|.++..- |++ .|++
T Consensus 29 ItaVefd-~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls-- 105 (460)
T COG5170 29 ITAVEFD-ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS-- 105 (460)
T ss_pred eeEEEec-cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe--
Confidence 4579998 689999999988999999754322 322 122 1368888887 643 5554
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe---------CCCcEEEEECCCCeEEEEcccCCCc
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---------ENENLQILDVRNAELMEVSRTEFMT 230 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s---------~D~tIklWd~~tg~~~~~l~gh~~~ 230 (389)
..|+|||||.+.. +-|+... ..-.+=.|..|-++-+++.+ .|.-|-. ..|.---+.|.-.
T Consensus 106 --tNdktiKlWKiye-knlk~va---~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa-----~p~rvyaNaH~yh 174 (460)
T COG5170 106 --TNDKTIKLWKIYE-KNLKVVA---ENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA-----KPCRVYANAHPYH 174 (460)
T ss_pred --cCCceeeeeeeec-ccchhhh---ccccccccccccCCCcCCHHHhhcccccccceEEEe-----ccceeccccceeE
Confidence 4579999999875 3333221 11111112112222222211 2222221 1222223679999
Q ss_pred eEEEEEcCCCcEEEEEcCCeEEEEeCC--CcE--EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCC
Q 016446 231 PSAFIFLYENQLFLTFRNRTVAVWNFR--GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 231 v~sv~fspdg~~laS~sD~tIklWd~~--G~~--l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~ 306 (389)
+.++.|..|.+.++|+.|=.|.||+++ -.+ +...+.|.....-.+|++..|+|.-..+..+|.. .|
T Consensus 175 iNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS----------kG 244 (460)
T COG5170 175 INSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS----------KG 244 (460)
T ss_pred eeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC----------CC
Confidence 999999999999999999999999985 233 3445555431111237899999999888888754 59
Q ss_pred eEEEEeCCCCe-EEE--EecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 307 SINVSSILTGK-CLA--KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 307 tIklWd~~tg~-~l~--tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
+|||=|+++.- |.. +|..-+- ++ .. .+..-+....|..+-|||+|++|+|-+ --|
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~----------D~----v~-------~~ff~eivsSISD~kFs~ngryIlsRd-ylt 302 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTI----------DG----VD-------VDFFEEIVSSISDFKFSDNGRYILSRD-YLT 302 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhcc----------Cc----cc-------chhHHHHhhhhcceEEcCCCcEEEEec-cce
Confidence 99999987322 221 1111110 00 00 001111125788899999999998865 478
Q ss_pred EEEccC
Q 016446 384 VHVWSN 389 (389)
Q Consensus 384 IrlW~~ 389 (389)
|+|||.
T Consensus 303 vkiwDv 308 (460)
T COG5170 303 VKIWDV 308 (460)
T ss_pred EEEEec
Confidence 999984
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=0.00015 Score=72.01 Aligned_cols=268 Identities=14% Similarity=0.140 Sum_probs=171.0
Q ss_pred CceEEEEeccc--ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe--ccCCCCCcceeEee
Q 016446 22 SGVCAAFSRET--NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI--RRGKPDSGFALFES 97 (389)
Q Consensus 22 ~gtiklW~~~t--g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i--~~g~~~~~~~l~~~ 97 (389)
++-|..|++++ |+.-............=++|+|+++.|-++-..+. + ..|--..+ ..|++-+ +-..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~------ggvaay~iD~~~G~Lt~---ln~~ 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-E------GGVAAYRIDPDDGRLTF---LNRQ 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-c------CcEEEEEEcCCCCeEEE---eecc
Confidence 67889999873 43322222222355678999999999888765432 2 22222333 4476621 1111
Q ss_pred ecccC-ceeEEEecCCCeEEEEecC-CCeEEEEeCC-CCeEE---EEe-cCC----------cEEEEEEcC-CceEEEEe
Q 016446 98 ESLKW-PGFVEFDDVNGKVLTYSAQ-DSIYKVFDLK-NYTML---YSI-SDK----------HVQEIKISP-GIMLLIFN 159 (389)
Q Consensus 98 ~~~~~-~~~v~Fs~pdG~~Las~s~-D~tiklWdl~-~g~~l---~tl-~~~----------~V~~vafS~-g~~la~~~ 159 (389)
...+. +..|+++ ++|++|.++.. -+.|.+.-+. .|.+. ..+ +.. .+....|.| +++|++..
T Consensus 85 ~~~g~~p~yvsvd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 85 TLPGSPPCYVSVD-EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred ccCCCCCeEEEEC-CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 23333 4679998 89999999884 6889999885 47653 222 222 388999995 77887764
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEee---cCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCC--Ce--EEEEc---cc--
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYH---LLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN--AE--LMEVS---RT-- 226 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~---~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~t--g~--~~~~l---~g-- 226 (389)
-+ .| .|.++++..|++-..-+. -+..-+-++|+ |.+...-. .--++||-+|.... |+ ++|++ ..
T Consensus 164 LG-~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 164 LG-TD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred cC-Cc-eEEEEEcccCccccccccccCCCCCcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 33 33 577999998876643321 12333789998 54544444 45899999998876 44 34432 11
Q ss_pred -CCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC--CcEEEEecc---CcC-CcCCCCeeEEEECCCCCEEEEEecCCCc
Q 016446 227 -EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GELVTSFED---HLL-WHPDCNTNNIYITSDQDLIISYCKAEPE 297 (389)
Q Consensus 227 -h~~~v~sv~fspdg~~laS~s--D~tIklWd~~--G~~l~tl~g---h~~-~~~~~~v~sv~fSpdG~~laS~s~D~~~ 297 (389)
...+.-+|..+|||++|-.+. ...|-++.++ |..|..++- |.. | +...|+|+|++|+.+..+
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P------R~F~i~~~g~~Liaa~q~--- 311 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP------RDFNINPSGRFLIAANQK--- 311 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC------ccceeCCCCCEEEEEccC---
Confidence 234677899999999998884 6688888874 444433321 111 2 688999999999999887
Q ss_pred ccccCCCCCeEEEEeC--CCCeEE
Q 016446 298 DQWMEGSAGSINVSSI--LTGKCL 319 (389)
Q Consensus 298 ~~~~~s~D~tIklWd~--~tg~~l 319 (389)
..+|.++-+ +||++-
T Consensus 312 -------sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 312 -------SDNITVFERDKETGRLT 328 (346)
T ss_pred -------CCcEEEEEEcCCCceEE
Confidence 256888854 567653
No 284
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.64 E-value=1.6e-05 Score=78.26 Aligned_cols=223 Identities=14% Similarity=0.145 Sum_probs=140.8
Q ss_pred EEEEEeeC-CCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEe-----cC
Q 016446 48 RSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-----AQ 121 (389)
Q Consensus 48 ~sv~~spd-g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~-----s~ 121 (389)
..++.+|. +..++.+- . +.....++|..+|+.. +.+...+-...-+-..|| |||++|-+. +.
T Consensus 8 H~~a~~p~~~~avafaR----R-----PG~~~~v~D~~~g~~~--~~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~g 75 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFAR----R-----PGTFALVFDCRTGQLL--QRLWAPPGRHFYGHGVFS-PDGRLLYTTENDYETG 75 (305)
T ss_pred cceeeCCCCCeEEEEEe----C-----CCcEEEEEEcCCCcee--eEEcCCCCCEEecCEEEc-CCCCEEEEeccccCCC
Confidence 46788884 44333321 1 2356677888888863 222211100001238898 999998764 34
Q ss_pred CCeEEEEeCC-CCeEEEEecCCcE--EEEEEc-CCceEEEEecC---------------CCCeeEEEEEcCCCeEEEE--
Q 016446 122 DSIYKVFDLK-NYTMLYSISDKHV--QEIKIS-PGIMLLIFNRS---------------SSHVPLKILSIEDGTVLKV-- 180 (389)
Q Consensus 122 D~tiklWdl~-~g~~l~tl~~~~V--~~vafS-~g~~la~~~~~---------------s~d~tiklWd~~tG~~l~t-- 180 (389)
.|.|-|||+. +++.+..+..+.| .++.+. ||.+|+++..+ .++-.+-+-|..+|+++..
T Consensus 76 ~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 76 RGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred cEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 7899999998 7778888875433 567788 56688877533 1223556678899999976
Q ss_pred E--eecCCceeEEEEEecCCCeEEEE-eCCCc-----EEEEECCCCeEEEEcc-------cCCCceEEEEEcCCCcEEEE
Q 016446 181 F--YHLLHRNKKVDFIEQFNEKLLVK-QENEN-----LQILDVRNAELMEVSR-------TEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 181 l--~~~~~~~~~v~f~~~~~~~l~~~-s~D~t-----IklWd~~tg~~~~~l~-------gh~~~v~sv~fspdg~~laS 245 (389)
| ..|.-.++-++.. .+ +..+.+ ++.+. =-|.-.+.|+.++.+. .-...+-||+|+++|.++|.
T Consensus 156 Lp~~~~~lSiRHLa~~-~~-G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVD-GD-GTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV 233 (305)
T ss_pred cCccccccceeeEEec-CC-CcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence 5 3355567777775 33 444443 43222 1122222333333322 23468999999999998887
Q ss_pred Ec--CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 246 FR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 246 ~s--D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
.+ -+.+-+||.. |+++....=. | +..|+-.++| +++|.+
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~~l~-----D--~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSVPLP-----D--ACGVAPTDDG-FLVSSG 275 (305)
T ss_pred ECCCCCEEEEEECCCCCEeeccccC-----c--eeeeeecCCc-eEEeCC
Confidence 77 7899999996 9988654322 1 5788888888 888854
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.63 E-value=2.1e-07 Score=105.95 Aligned_cols=210 Identities=17% Similarity=0.203 Sum_probs=156.6
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCc-eEEEEecCCCCeeEEEEEcCCCeEEEEEee-cCCce
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYH-LLHRN 188 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~-~la~~~~~s~d~tiklWd~~tG~~l~tl~~-~~~~~ 188 (389)
|.++..+....+++.-=|..+-+..+..-+-+.|+.+.=+|-. .-++ ++.|+.||.|-...|+.+.++.. -...+
T Consensus 2178 ~~s~~~~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Ylt---gs~dgsv~~~~w~~~~~v~~~rt~g~s~v 2254 (2439)
T KOG1064|consen 2178 SFSNRFTPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLT---GSQDGSVRMFEWGHGQQVVCFRTAGNSRV 2254 (2439)
T ss_pred cccccCCcccCCccccceecccceeEeecccCceeeecCCCCCceEEe---cCCCceEEEEeccCCCeEEEeeccCcchh
Confidence 4566677777777777777644333322223567666666633 3334 35678999999999998888872 22667
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE--c--CCeEEEEeC--CC--cE
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF--R--NRTVAVWNF--RG--EL 260 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~--s--D~tIklWd~--~G--~~ 260 (389)
....|+ ..|.+..++-.||.+-+|.+. .+..-..+-|+.....++|-. .+++++ + ++.+-+||. .+ -|
T Consensus 2255 tr~~f~-~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2255 TRSRFN-HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred hhhhhc-ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce
Confidence 888888 458899999999999999985 555556677999999999987 667766 3 679999996 33 35
Q ss_pred EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCC
Q 016446 261 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 340 (389)
Q Consensus 261 l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~ 340 (389)
+. +.|... +..+++-|..|.|+||++ +|-|+|||+...|++++++.
T Consensus 2331 v~--~~H~~g-----aT~l~~~P~~qllisggr-----------~G~v~l~D~rqrql~h~~~~---------------- 2376 (2439)
T KOG1064|consen 2331 VH--TCHDGG-----ATVLAYAPKHQLLISGGR-----------KGEVCLFDIRQRQLRHTFQA---------------- 2376 (2439)
T ss_pred ee--eecCCC-----ceEEEEcCcceEEEecCC-----------cCcEEEeehHHHHHHHHhhh----------------
Confidence 55 667665 689999999999999876 49999999998888766653
Q ss_pred CCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 341 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.. ..+++++|+..|.||||+.
T Consensus 2377 ---------------------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2377 ---------------------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred ---------------------------hh-hhheeeccCcccceEEEEc
Confidence 12 4578999999999999973
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.62 E-value=8.3e-08 Score=101.56 Aligned_cols=197 Identities=14% Similarity=0.139 Sum_probs=136.5
Q ss_pred eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEec--CCcEEEEEEc--CCceEEEEecCCCCeeEEEEE
Q 016446 97 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIKIS--PGIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 97 ~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~--~~~V~~vafS--~g~~la~~~~~s~d~tiklWd 171 (389)
+.+...+..+.|.+.+-..||+++.|-.+..||+.+.. +++... ...-..|+++ ++..||++. + +-|++||
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh-g---~~i~vwd 186 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH-G---NDIFVWD 186 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc-C---CceEEEe
Confidence 44555556678875556689999999999999998665 677665 3556678999 677887542 2 5899999
Q ss_pred cCC-CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC--CeEEEEcccCCCceEEEEEcCCCcEEEE---
Q 016446 172 IED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AELMEVSRTEFMTPSAFIFLYENQLFLT--- 245 (389)
Q Consensus 172 ~~t-G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t--g~~~~~l~gh~~~v~sv~fspdg~~laS--- 245 (389)
+.- +..|.++++|...++.++|+..--..+++.+.|+|||.||-.. .+.-++ ..-...|+.-.|.|-|+-...
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~ 265 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGEGYCIMPM 265 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee-ccccCcceeccccccCceeEeccc
Confidence 875 5688999999888999999854456778889999999999763 233332 233456777777774442211
Q ss_pred --------Ec-CCeEEEEeC-C-CcEEEEeccCcCCcCCCCeeEEEECC----CC------CEEEEEecCCCcccccCCC
Q 016446 246 --------FR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITS----DQ------DLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 246 --------~s-D~tIklWd~-~-G~~l~tl~gh~~~~~~~~v~sv~fSp----dG------~~laS~s~D~~~~~~~~s~ 304 (389)
-. ++.-+.|++ + -+.+.+|.||.+.| ...-+=. || =.|++=|.|
T Consensus 266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V-----~eFlWR~r~e~~~d~d~rdfQLVTWSkD---------- 330 (1081)
T KOG0309|consen 266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV-----LEFLWRKRKECDGDYDSRDFQLVTWSKD---------- 330 (1081)
T ss_pred cCCeeeeeccccchhhhhccccCCcceeeecCcchHH-----HHHhhhhcccccCCCCccceeEEEeecC----------
Confidence 11 445556776 4 46799999999753 2222211 11 147777765
Q ss_pred CCeEEEEeCC
Q 016446 305 AGSINVSSIL 314 (389)
Q Consensus 305 D~tIklWd~~ 314 (389)
.++|||-|.
T Consensus 331 -~~lrlWpI~ 339 (1081)
T KOG0309|consen 331 -QTLRLWPID 339 (1081)
T ss_pred -CceEeeecc
Confidence 899999874
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1e-07 Score=98.30 Aligned_cols=170 Identities=11% Similarity=0.177 Sum_probs=122.9
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC-------CeEEEEcccCCCceEEEEEcCCCcEEEEEcCC
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-------AELMEVSRTEFMTPSAFIFLYENQLFLTFRNR 249 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-------g~~~~~l~gh~~~v~sv~fspdg~~laS~sD~ 249 (389)
.|..|.||+..++.++.. .....++++|.|+|||||.++. ..|.-+...|..+|.++.|..|-++++|. |+
T Consensus 727 rL~nf~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-cC
Confidence 456778898999888875 2345778889999999998873 34788899999999999999999998643 89
Q ss_pred eEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCC
Q 016446 250 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 328 (389)
Q Consensus 250 tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~ 328 (389)
-|.+||.- |+++..++.-...-...+|..+- +-|..++..||.- ..|||+.|.+.++....++-....
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsa----------eSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSA----------ESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccc----------hhhheeeecccccceeeEEeccCC
Confidence 99999985 98876444211100011233332 3356666666543 379999999998877777654310
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+ + -.-+.+++.-|.|+.||.|=..|+|.+-|
T Consensus 874 ---------~------------------P--na~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 874 ---------G------------------P--NALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred ---------C------------------C--chheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 0 0 03688999999999999998888887644
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.59 E-value=0.00051 Score=64.83 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=118.5
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE--EEEec-----CCcEEEEEEcC-CceEEEEecCCCC------eeEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS-----DKHVQEIKISP-GIMLLIFNRSSSH------VPLK 168 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~--l~tl~-----~~~V~~vafS~-g~~la~~~~~s~d------~tik 168 (389)
+..++|..++|+++++.. +.+.+.|+++++. +.... ....+++++.| |... .+...... +.|.
T Consensus 42 ~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly-~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLY-VTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EE-EEEECCBCTTCGGSEEEE
T ss_pred CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEE-EEecCCCccccccccceE
Confidence 667888757888877654 3445559999874 34442 24689999995 5544 44333211 3466
Q ss_pred EEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECC--CCeE-----EEEcccCCCceEEEEEcCCC
Q 016446 169 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--NAEL-----MEVSRTEFMTPSAFIFLYEN 240 (389)
Q Consensus 169 lWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~--tg~~-----~~~l~gh~~~v~sv~fspdg 240 (389)
.++.. |+......+ ...-+.++|+ |++..|... +..+.|.-+++. +++. ...+.+....+-.+++.++|
T Consensus 119 ~~~~~-~~~~~~~~~-~~~pNGi~~s-~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 119 RIDPD-GKVTVVADG-LGFPNGIAFS-PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EEETT-SEEEEEEEE-ESSEEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred EECCC-CeEEEEecC-cccccceEEC-CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 66755 665555543 4667899998 777777654 688999999985 3312 22233333458889999999
Q ss_pred cEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEE-CCCCCEEEEE
Q 016446 241 QLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISY 291 (389)
Q Consensus 241 ~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~f-SpdG~~laS~ 291 (389)
++.++.. .+.|...|.+|+++..++--... +.+++| -||.+.|...
T Consensus 196 ~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~-----~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPDGKLLREIELPVPR-----PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp -EEEEEETTTEEEEEETTSCEEEEEE-SSSS-----EEEEEEESTTSSEEEEE
T ss_pred CEEEEEcCCCEEEEECCCccEEEEEcCCCCC-----EEEEEEECCCCCEEEEE
Confidence 9999886 89999999999998887644222 689999 5887777654
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.57 E-value=8.3e-07 Score=86.53 Aligned_cols=263 Identities=14% Similarity=0.168 Sum_probs=154.1
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccce-----eeeeeecCCcc-----------eEEEEEEeeCCC---EEEEE
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNR-----RICFLNVSPDE-----------VIRSLFYNKNND---SLITV 62 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~-----~l~tl~~~~~~-----------~v~sv~~spdg~---~l~s~ 62 (389)
.+|..|.|. |.+||++...|.|-++.++.-+ .+-.+++|..+ .|+.|-+-.+++ .|++
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls- 105 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS- 105 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe-
Confidence 356777777 8999999999999999986432 33346666433 377787777754 4555
Q ss_pred EEeecCCCcceeeeeeeEeEeccCCCC--CcceeEeeecccCceeEEEecCCCeEEEE--------ec-CCCeEEEEeCC
Q 016446 63 SVYASDNFSSLKCRSTKIEYIRRGKPD--SGFALFESESLKWPGFVEFDDVNGKVLTY--------SA-QDSIYKVFDLK 131 (389)
Q Consensus 63 s~~~~~d~~~l~~~~~~l~~i~~g~~~--~~~~l~~~~~~~~~~~v~Fs~pdG~~Las--------~s-~D~tiklWdl~ 131 (389)
+.| ++++||-+....+- ....|- .++.| |-|--|.| .+ .|..| -+.
T Consensus 106 ----tNd------ktiKlWKiyeknlk~va~nnls--------~~~~~--~~~g~~~s~~~l~lprls~hd~ii---aa~ 162 (460)
T COG5170 106 ----TND------KTIKLWKIYEKNLKVVAENNLS--------DSFHS--PMGGPLTSTKELLLPRLSEHDEII---AAK 162 (460)
T ss_pred ----cCC------ceeeeeeeecccchhhhccccc--------ccccc--ccCCCcCCHHHhhcccccccceEE---Eec
Confidence 467 67777776444320 000010 01111 11100110 01 12222 111
Q ss_pred CCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC-eEEEEE--e-----ecCCceeEEEEEecCCCeEE
Q 016446 132 NYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG-TVLKVF--Y-----HLLHRNKKVDFIEQFNEKLL 202 (389)
Q Consensus 132 ~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG-~~l~tl--~-----~~~~~~~~v~f~~~~~~~l~ 202 (389)
..+.-...|...+.++.|. |.++++++ .|-.|-||+++-- .+.... + ..+.-+.+..|+|.---.+.
T Consensus 163 p~rvyaNaH~yhiNSiS~NsD~et~lSa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm 238 (460)
T COG5170 163 PCRVYANAHPYHINSISFNSDKETLLSA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM 238 (460)
T ss_pred cceeccccceeEeeeeeecCchheeeec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE
Confidence 1111123455678999999 77777653 4578899987521 122111 1 11122456667643233444
Q ss_pred EEeCCCcEEEEECCCCe-EE---E------------EcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC--CcEEEEe
Q 016446 203 VKQENENLQILDVRNAE-LM---E------------VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSF 264 (389)
Q Consensus 203 ~~s~D~tIklWd~~tg~-~~---~------------~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~--G~~l~tl 264 (389)
-++.-|+|||-|++... |. + .+++-...|..+-|+|+|+++++-.=-||||||++ ..+++|.
T Consensus 239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi 318 (460)
T COG5170 239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceee
Confidence 57789999999998432 21 1 12333456888999999999998778899999996 6788888
Q ss_pred ccCcC--------CcCCC--CeeEEEECCCCCEEEEEecC
Q 016446 265 EDHLL--------WHPDC--NTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 265 ~gh~~--------~~~~~--~v~sv~fSpdG~~laS~s~D 294 (389)
.=|.. ...++ .-..+.||-|.+-+.|||-.
T Consensus 319 ~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 319 PMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred chHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence 65532 11111 01468899999999998764
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1e-07 Score=98.22 Aligned_cols=173 Identities=13% Similarity=0.146 Sum_probs=124.6
Q ss_pred EEecCCcEEEEE-EcCCceEEEEecCCCCeeEEEEEcC-------CCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCC
Q 016446 137 YSISDKHVQEIK-ISPGIMLLIFNRSSSHVPLKILSIE-------DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE 208 (389)
Q Consensus 137 ~tl~~~~V~~va-fS~g~~la~~~~~s~d~tiklWd~~-------tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~ 208 (389)
++.|++.|++++ +++..-++++ +.|+|||||.++ |..|..|++.|..++.++-|.+ + .--+.|-|+
T Consensus 731 f~GH~~~iRai~AidNENSFiSA---SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~--lr~i~ScD~ 804 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISA---SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-D--LRSIASCDG 804 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeec---cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-c--cceeeeccC
Confidence 344567788865 4444444344 567999999986 3458888889999999999984 2 223456799
Q ss_pred cEEEEECCCCeEEEEccc--CCCceEEEEEcC--CCcEEEEE-c-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEE
Q 016446 209 NLQILDVRNAELMEVSRT--EFMTPSAFIFLY--ENQLFLTF-R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 281 (389)
Q Consensus 209 tIklWd~~tg~~~~~l~g--h~~~v~sv~fsp--dg~~laS~-s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~f 281 (389)
-|.+||.--|+++..... ....+.-|.-.| |..+++.+ + ..|||+.|.+ ++....++--..+-|+..++.++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999988887664321 122334444433 56667666 5 8999999997 887777775544445556899999
Q ss_pred CCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 282 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 282 SpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
-|.|+.||.+= +.|+|-+-|.++|+.+...+.-+
T Consensus 885 a~~GN~lAa~L-----------SnGci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 885 ADKGNKLAAAL-----------SNGCIAILDARNGKVINSWRPME 918 (1034)
T ss_pred ccCcchhhHHh-----------cCCcEEEEecCCCceeccCCccc
Confidence 99999999864 34999999999999988776654
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.55 E-value=0.00011 Score=82.69 Aligned_cols=340 Identities=11% Similarity=0.078 Sum_probs=178.5
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEE----ecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAF----SRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW----~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
.+|..+-+. .+.+..+..+|-|-+. +.. ..-...-|.-...|.+.+||||+++||.+. +...+=.| +
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~--~~~~E~VG~vd~GI~a~~WSPD~Ella~vT--~~~~l~~m---t 148 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPD--EDEIEIVGSVDSGILAASWSPDEELLALVT--GEGNLLLM---T 148 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCC--CceeEEEEEEcCcEEEEEECCCcCEEEEEe--CCCEEEEE---e
Confidence 456666666 5667778888988888 553 222234444456899999999999998854 21111111 0
Q ss_pred eeEeEeccCCCCCcceeEee---ecccC-ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CC
Q 016446 78 TKIEYIRRGKPDSGFALFES---ESLKW-PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PG 152 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~---~~~~~-~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g 152 (389)
+=|++..-... ....|+. -..|| -..--|.-.-||..|-.-.|-++. .+..|.. + ..+.-..|.+- ||
T Consensus 149 -~~fd~i~E~~l-~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~--~~d~~~~--s-~dd~~~~ISWRGDG 221 (928)
T PF04762_consen 149 -RDFDPISEVPL-DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP--KVDEGKL--S-WDDGRVRISWRGDG 221 (928)
T ss_pred -ccceEEEEeec-CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC--ccccCcc--c-cCCCceEEEECCCC
Confidence 11221100000 0000110 01111 001233212233222111122221 1111111 1 12222355566 89
Q ss_pred ceEEEEecCCC---CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe---CCCcEEEEECCCCeEEE----
Q 016446 153 IMLLIFNRSSS---HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELME---- 222 (389)
Q Consensus 153 ~~la~~~~~s~---d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s---~D~tIklWd~~tg~~~~---- 222 (389)
+++|+++-+.. -+.||+|+- .|++..+-+--.+--..++|- |.|..||+.+ ....|-.+.- +|....
T Consensus 222 ~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l 298 (928)
T PF04762_consen 222 EYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTL 298 (928)
T ss_pred cEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEec
Confidence 99988875222 479999994 588777665222223567775 6777777776 3567777764 343322
Q ss_pred EcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC---CcEEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcc
Q 016446 223 VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPED 298 (389)
Q Consensus 223 ~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~---G~~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~ 298 (389)
.+......|..+.|++|+.+||---...|+||... .-+.+.+.-.... .+..+.|+| +...|...+..
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~----~~~~~~Wdpe~p~~L~v~t~~---- 370 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSE----SVNFVKWDPEKPLRLHVLTSN---- 370 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCC----CCCceEECCCCCCEEEEEecC----
Confidence 23355678999999999999998764459999874 3356666533321 134588888 34445555432
Q ss_pred cccCCCCCeEEEEe----CCCCe--------EEEEecCCCCC--CCcccccCCCCCCCccccccccceecccccccCCEE
Q 016446 299 QWMEGSAGSINVSS----ILTGK--------CLAKINATNCS--PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT 364 (389)
Q Consensus 299 ~~~~s~D~tIklWd----~~tg~--------~l~tl~gH~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 364 (389)
|.+...+ +..+. .+..+.|.... |+-...+|+- |... .-.-...|.
T Consensus 371 -------g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPP----------Ms~~---~l~~~~~v~ 430 (928)
T PF04762_consen 371 -------GQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPP----------MSSY---ELELPSPVN 430 (928)
T ss_pred -------CcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCch----------Hhce---EEcCCCCcE
Confidence 3333322 22111 12222222100 1111111111 1000 001115899
Q ss_pred EEEECCCCCEEEEecCCCcEEEcc
Q 016446 365 SLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 365 svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.|+|+|++..+|.-..||+|.+|.
T Consensus 431 ~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 431 DVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEEEeCCCCeEEEEECCCCEEEEE
Confidence 999999999999999999999986
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.54 E-value=3.7e-07 Score=96.81 Aligned_cols=264 Identities=13% Similarity=0.165 Sum_probs=163.7
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCC-CCeEEEEecC---CcEEEEEEcC----CceEEEEecCCCCeeEEEEEcC
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISD---KHVQEIKISP----GIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~-~g~~l~tl~~---~~V~~vafS~----g~~la~~~~~s~d~tiklWd~~ 173 (389)
+..++..+ |-|+-+|.++.-|-+ +=|+. .+.+-+-|+. =.|..+.+|| ...+++. +...+ -+|++.
T Consensus 26 ~~~a~si~-p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVst---s~qka-iiwnlA 99 (1081)
T KOG0309|consen 26 GFNAVSIN-PSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVST---SNQKA-IIWNLA 99 (1081)
T ss_pred cccceeec-cccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEec---Ccchh-hhhhhh
Confidence 34568886 889999988877665 45654 4554444442 3577788883 5566544 22234 488876
Q ss_pred C---CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe-EEEEcccCCCceEEEEEcC-CCcEEEEEcC
Q 016446 174 D---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLY-ENQLFLTFRN 248 (389)
Q Consensus 174 t---G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~-~~~~l~gh~~~v~sv~fsp-dg~~laS~sD 248 (389)
- ....-.|-+|+..+..+.|.++.++.+++.+.|-.+.+||+++-. .+-...--...-..|++++ ++..+|+.-.
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence 3 334455668888899999998888999999999999999998744 3333322222345588886 6666666658
Q ss_pred CeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCCC--eEEEEec
Q 016446 249 RTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTG--KCLAKIN 323 (389)
Q Consensus 249 ~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~tg--~~l~tl~ 323 (389)
+-|.+||.+ +..+.++++|... |++++|..-- ..|.+. ++|+|||.||-... +.-++..
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~vs~-----vn~~~fnr~~~s~~~s~-----------~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGHVSS-----VNSIDFNRFKYSEIMSS-----------SNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred CceEEEeccCCCcceEEeccccee-----eehHHHhhhhhhhhccc-----------CCCCceeeecccccccccceecc
Confidence 899999996 6789999999875 7888886532 223333 45799999996421 1111111
Q ss_pred -------CCCCCCCcc--ccc-CCCC-------CCCcccccc---ccceecccccccCCEEEE--------EECCCCC--
Q 016446 324 -------ATNCSPKVD--DEL-GSSS-------TGKSKKLNK---SSYIRSTVGEALEDITSL--------FYDEERN-- 373 (389)
Q Consensus 324 -------gH~~~~~~~--~~~-~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~V~sv--------afSpdg~-- 373 (389)
|-.. |++. .+- ..|+ -...+++|| ...-..+..||++.|-.. .|..|.+
T Consensus 244 t~~piw~~r~~-Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdf 322 (1081)
T KOG0309|consen 244 TNFPIWRGRYL-PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDF 322 (1081)
T ss_pred ccCcceecccc-ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccce
Confidence 1100 1111 000 0111 011233443 244455566666655432 2333333
Q ss_pred EEEEecCCCcEEEcc
Q 016446 374 EIYTGNRHGLVHVWS 388 (389)
Q Consensus 374 ~LaSgs~D~tIrlW~ 388 (389)
.|+|=|.|.++|||.
T Consensus 323 QLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 323 QLVTWSKDQTLRLWP 337 (1081)
T ss_pred eEEEeecCCceEeee
Confidence 699999999999995
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.52 E-value=0.00012 Score=74.26 Aligned_cols=226 Identities=11% Similarity=0.078 Sum_probs=136.2
Q ss_pred EEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEE-EEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCC
Q 016446 9 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRS-LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 87 (389)
Q Consensus 9 i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~s-v~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~ 87 (389)
++..++.|..++.+|.+..+|.+||+.+=..+... .+.+ .... ++ +|+. +..+ ..+.-.|..+|+
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~ssP~v~-~~-~v~v----~~~~------g~l~ald~~tG~ 181 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG--EALSRPVVS-DG-LVLV----HTSN------GMLQALNESDGA 181 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC--ceecCCEEE-CC-EEEE----ECCC------CEEEEEEccCCC
Confidence 45557888889999999999999999887665532 2222 1221 33 3443 2234 455556778888
Q ss_pred CCCcceeEeeecccCc------eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC------Cc---EEEEEEcC-
Q 016446 88 PDSGFALFESESLKWP------GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KH---VQEIKISP- 151 (389)
Q Consensus 88 ~~~~~~l~~~~~~~~~------~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~------~~---V~~vafS~- 151 (389)
. +|........ .+-... +|. +..++.++.+...|+++|+.+....- .. ...+.-+|
T Consensus 182 ~-----~W~~~~~~~~~~~~~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 182 V-----KWTVNLDVPSLTLRGESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred E-----eeeecCCCCcccccCCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 6 6653321100 111121 344 44466788898899999987655421 01 11111223
Q ss_pred --CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC
Q 016446 152 --GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM 229 (389)
Q Consensus 152 --g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~ 229 (389)
++.+..++ .++.+.-.|+.+|+.+-+.+. .....+. ..++.+...+.|+.+...|.++|+.+-....-..
T Consensus 254 v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~--~~~~~~~---~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~ 325 (394)
T PRK11138 254 VVGGVVYALA---YNGNLVALDLRSGQIVWKREY--GSVNDFA---VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH 325 (394)
T ss_pred EECCEEEEEE---cCCeEEEEECCCCCEEEeecC--CCccCcE---EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC
Confidence 45555543 246899999999998876542 2212222 2478888889999999999999987643221111
Q ss_pred c-eEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEec
Q 016446 230 T-PSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE 265 (389)
Q Consensus 230 ~-v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~ 265 (389)
. ..+.+. .+|.+++...||.+...|.. |+.+...+
T Consensus 326 ~~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 326 RLLTAPVL-YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CcccCCEE-ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 1 111111 26666655459999999996 99887665
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.50 E-value=0.00034 Score=78.81 Aligned_cols=263 Identities=13% Similarity=0.119 Sum_probs=154.8
Q ss_pred ccEEEEEec------CceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccC
Q 016446 13 RDIVFALAH------SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 86 (389)
Q Consensus 13 ~~~~a~~~~------~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g 86 (389)
|+++|+.+- -+.+|+|+++ |++-.+-..- ...-.+++|.|.|+.||++-. .+++ +.|-++. +.|
T Consensus 221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v-~gLe~~l~WrPsG~lIA~~q~-~~~~------~~VvFfE-rNG 290 (928)
T PF04762_consen 221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV-DGLEGALSWRPSGNLIASSQR-LPDR------HDVVFFE-RNG 290 (928)
T ss_pred CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC-CCccCCccCCCCCCEEEEEEE-cCCC------cEEEEEe-cCC
Confidence 899999885 3699999997 9877765533 356679999999999999765 3344 5555554 444
Q ss_pred CCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe--EEEEec---CCcEEEEEEcC--CceEEEEe
Q 016446 87 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS---DKHVQEIKISP--GIMLLIFN 159 (389)
Q Consensus 87 ~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~l~tl~---~~~V~~vafS~--g~~la~~~ 159 (389)
-......|.-...-..+..++|+ +|+.+||---.|. |+||-..++. +-+.+. ...+..+.|+| ..+|....
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence 32111111100112234679998 8999999876555 9999988887 334444 23455588884 33444332
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEE---ecCCCeEEEEeCCCcEEEEECCCCe-----EEEEcccCCCce
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI---EQFNEKLLVKQENENLQILDVRNAE-----LMEVSRTEFMTP 231 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~---~~~~~~l~~~s~D~tIklWd~~tg~-----~~~~l~gh~~~v 231 (389)
..+ .+...+ ..+.+..+ +|++.-+++-=...+++|=.++... +...+. -...|
T Consensus 369 ~~g---~~~~~~---------------~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v 429 (928)
T PF04762_consen 369 SNG---QYEIYD---------------FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPV 429 (928)
T ss_pred cCC---cEEEEE---------------EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCc
Confidence 211 111111 11223322 1112223333355677877776654 122222 23579
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc--------EEEEeccC-----cCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 016446 232 SAFIFLYENQLFLTFR-NRTVAVWNFR-GE--------LVTSFEDH-----LLWHPDCNTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~tIklWd~~-G~--------~l~tl~gh-----~~~~~~~~v~sv~fSpdG~~laS~s~D~~ 296 (389)
..|+|++++..+|.-. ||+|.+|... .. +...+..+ ........+..++|..+..+++..+.+
T Consensus 430 ~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 507 (928)
T PF04762_consen 430 NDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD-- 507 (928)
T ss_pred EEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC--
Confidence 9999999998777776 9999999953 21 11122111 011111236788888888877776542
Q ss_pred cccccCCCCCeEEEEeCC
Q 016446 297 EDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~ 314 (389)
.+-..|.++++.
T Consensus 508 ------~~~~~i~~~~~~ 519 (928)
T PF04762_consen 508 ------SNQSKIVLVDID 519 (928)
T ss_pred ------cccceEEEEEec
Confidence 123678888874
No 295
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.45 E-value=1.7e-05 Score=77.00 Aligned_cols=164 Identities=10% Similarity=0.068 Sum_probs=112.0
Q ss_pred CCe-EEEEecCCCeEEEEeCCCCeEEEEec---C---C--cEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEE--
Q 016446 112 NGK-VLTYSAQDSIYKVFDLKNYTMLYSIS---D---K--HVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLK-- 179 (389)
Q Consensus 112 dG~-~Las~s~D~tiklWdl~~g~~l~tl~---~---~--~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~-- 179 (389)
+|. .|+=+-.+|.|.+.....-+....|. . . .-.++.|++ +..++++.+. +.+..=+...+.+.+
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~---G~~~~v~~t~~~le~vq 159 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSR---GSISGVYETEMVLEKVQ 159 (339)
T ss_pred CccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCC---CcEEEEecceeeeeecc
Confidence 444 45556667788887753333223332 1 1 134567774 6666655333 444433433344444
Q ss_pred EEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEE-cccCCCceEEEEEc-CCCcEEEEEc-CCeEEEEe
Q 016446 180 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEV-SRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 180 tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~-tg~~~~~-l~gh~~~v~sv~fs-pdg~~laS~s-D~tIklWd 255 (389)
+.+.|.-..|...|+..+++.+.+|++|+.+..||++ .++++-. -+-|...|-++--| |.+.++++|+ |-.|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 6777888889999987778888889999999999999 5666655 56788999998776 5788999999 99999999
Q ss_pred CC--CcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 256 FR--GELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 256 ~~--G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
.+ |+.+..-. .. +.||.+.-+|-
T Consensus 240 tRnm~kPl~~~~--v~----GGVWRi~~~p~ 264 (339)
T KOG0280|consen 240 TRNMGKPLFKAK--VG----GGVWRIKHHPE 264 (339)
T ss_pred hhcccCccccCc--cc----cceEEEEecch
Confidence 95 88764222 11 23899999994
No 296
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.44 E-value=0.00018 Score=72.21 Aligned_cols=253 Identities=12% Similarity=0.097 Sum_probs=150.9
Q ss_pred cCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC-----CcceeE
Q 016446 21 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-----SGFALF 95 (389)
Q Consensus 21 ~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~-----~~~~l~ 95 (389)
..+..-++|+++++.-.-... ...+....|||||+.||.+. + +.+.++++..++.. ....++
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-----~------~nly~~~~~~~~~~~lT~dg~~~i~ 87 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-----D------NNLYLRDLATGQETQLTTDGEPGIY 87 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-----T------TEEEEESSTTSEEEESES--TTTEE
T ss_pred cceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-----c------CceEEEECCCCCeEEeccccceeEE
Confidence 456788999987665543332 35788899999999999863 3 56666665555331 000011
Q ss_pred e--------eecccCceeEEEecCCCeEEEEecCCC------------------------------------eEEEEeCC
Q 016446 96 E--------SESLKWPGFVEFDDVNGKVLTYSAQDS------------------------------------IYKVFDLK 131 (389)
Q Consensus 96 ~--------~~~~~~~~~v~Fs~pdG~~Las~s~D~------------------------------------tiklWdl~ 131 (389)
. .|.+....++-|| |||+.||....|. .+.|+|++
T Consensus 88 nG~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~ 166 (353)
T PF00930_consen 88 NGVPDWVYEEEVFDRRSAVWWS-PDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA 166 (353)
T ss_dssp ESB--HHHHHHTSSSSBSEEE--TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred cCccceeccccccccccceEEC-CCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence 1 1124445568998 9999999875422 34457777
Q ss_pred CCeEE-EEec------CCcEEEEEEc-CCceE--EEEecCCCCeeEEEEEcCCCeEEEEEeec-CCce---eEEEEEecC
Q 016446 132 NYTML-YSIS------DKHVQEIKIS-PGIML--LIFNRSSSHVPLKILSIEDGTVLKVFYHL-LHRN---KKVDFIEQF 197 (389)
Q Consensus 132 ~g~~l-~tl~------~~~V~~vafS-~g~~l--a~~~~~s~d~tiklWd~~tG~~l~tl~~~-~~~~---~~v~f~~~~ 197 (389)
+++.. .... ...+..+.++ ++..| ...+.......+.+.|+.+|++-..+... .+.+ ....|..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC
Confidence 77632 1211 2468889998 56623 33445555567788899998876655532 2333 355555244
Q ss_pred CCeEEE-EeCCCcEEEE--ECCCCeEEEEcccCCCceEE-EEEcCCCcEEE-EEc-C--CeEEEEeC--C-CcEEEEecc
Q 016446 198 NEKLLV-KQENENLQIL--DVRNAELMEVSRTEFMTPSA-FIFLYENQLFL-TFR-N--RTVAVWNF--R-GELVTSFED 266 (389)
Q Consensus 198 ~~~l~~-~s~D~tIklW--d~~tg~~~~~l~gh~~~v~s-v~fspdg~~la-S~s-D--~tIklWd~--~-G~~l~tl~g 266 (389)
+..++- ...||--+|+ +..++... .+......|.. +.+.++++.|. ++. + ..-.||-+ + +.-++.|+.
T Consensus 247 ~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~ 325 (353)
T PF00930_consen 247 GNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC 325 (353)
T ss_dssp SSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST
T ss_pred CCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC
Confidence 544444 5577666655 56556544 55656667755 67788877554 443 2 35667765 5 567777886
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
....+ .++.|||||++++-.+.
T Consensus 326 ~~~~~-----~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 326 EDGDH-----YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSTT-----EEEEE-TTSSEEEEEEE
T ss_pred CCCCc-----eEEEECCCCCEEEEEEc
Confidence 65542 49999999999997664
No 297
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=8.2e-05 Score=77.35 Aligned_cols=262 Identities=11% Similarity=0.134 Sum_probs=152.5
Q ss_pred cEEEEEee--ccEEEEEe-----------cCceEEEEecccceeeeeeec--CCcceEEEEE-EeeCCCEEEEEEEeecC
Q 016446 5 KVIEIVAA--RDIVFALA-----------HSGVCAAFSRETNRRICFLNV--SPDEVIRSLF-YNKNNDSLITVSVYASD 68 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~-----------~~gtiklW~~~tg~~l~tl~~--~~~~~v~sv~-~spdg~~l~s~s~~~~~ 68 (389)
.|+-|-|| ..+|++=+ +.+.|.+||+.||.+++++.- .. -.+|.+| ||.|++++|-.- .
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frWS~DdKy~Arm~----~ 325 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRWSHDDKYFARMT----G 325 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-ccccceEEeccCCceeEEec----c
Confidence 46667777 66676644 447899999999999998876 43 5677665 899999887732 1
Q ss_pred CCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecC-----CCeEEEEeCCCCeEEEEecCCc
Q 016446 69 NFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISDKH 143 (389)
Q Consensus 69 d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~-----D~tiklWdl~~g~~l~tl~~~~ 143 (389)
.+|.+....=..+..++. + ....|...+|| |.+++||.=.. --++-|=.+.+++.+++-.=..
T Consensus 326 --~sisIyEtpsf~lld~Ks-----l----ki~gIr~Fsws-P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn 393 (698)
T KOG2314|consen 326 --NSISIYETPSFMLLDKKS-----L----KISGIRDFSWS-PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN 393 (698)
T ss_pred --ceEEEEecCceeeecccc-----c----CCccccCcccC-CCcceEEEEcccccCCcceEEEEecCccceeeecccee
Confidence 223333222222233332 1 11234557887 78888885432 1133334444444443332234
Q ss_pred EEEEEEc---CCceEEEEec-------CCCCeeEEEEEcCCCe-EEEEEeecCCceeEEEEEecCCCeEEEEe---CCCc
Q 016446 144 VQEIKIS---PGIMLLIFNR-------SSSHVPLKILSIEDGT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENEN 209 (389)
Q Consensus 144 V~~vafS---~g~~la~~~~-------~s~d~tiklWd~~tG~-~l~tl~~~~~~~~~v~f~~~~~~~l~~~s---~D~t 209 (389)
|..+... .|.+|+.--. .+.-..+.|..+..-+ .+..++ ....+..-++- |.|+++++-+ .-.|
T Consensus 394 VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWE-P~gdkF~vi~g~~~k~t 471 (698)
T KOG2314|consen 394 VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWE-PHGDKFAVISGNTVKNT 471 (698)
T ss_pred eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeec-cCCCeEEEEEccccccc
Confidence 5556555 3666653210 0000112223222111 011111 11344555564 7788887743 4589
Q ss_pred EEEEECCC-C---eEEEEcccCCCceEEEEEcCCCcEEEEE---c-CCeEEEEeCC-CcEEEEe-ccCcCCcCCCCeeEE
Q 016446 210 LQILDVRN-A---ELMEVSRTEFMTPSAFIFLYENQLFLTF---R-NRTVAVWNFR-GELVTSF-EDHLLWHPDCNTNNI 279 (389)
Q Consensus 210 IklWd~~t-g---~~~~~l~gh~~~v~sv~fspdg~~laS~---s-D~tIklWd~~-G~~l~tl-~gh~~~~~~~~v~sv 279 (389)
++.|-+++ . ++++.|.. ..-+.|-|+|.|+.++.+ | .|.+...|.+ .++..+- ..|-. -+.+
T Consensus 472 vsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~------at~v 543 (698)
T KOG2314|consen 472 VSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA------ATEV 543 (698)
T ss_pred eeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccc------cccc
Confidence 99999884 2 23444443 456788899999998877 4 7899999997 5554432 23443 3789
Q ss_pred EECCCCCEEEEEec
Q 016446 280 YITSDQDLIISYCK 293 (389)
Q Consensus 280 ~fSpdG~~laS~s~ 293 (389)
.+.|.|+|.+++|.
T Consensus 544 eWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSS 557 (698)
T ss_pred eECCCCCEEEEeee
Confidence 99999999999874
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=1.5e-06 Score=85.76 Aligned_cols=160 Identities=8% Similarity=0.102 Sum_probs=116.6
Q ss_pred EEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC-----CeEEEEEeecCCceeE
Q 016446 117 TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED-----GTVLKVFYHLLHRNKK 190 (389)
Q Consensus 117 as~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t-----G~~l~tl~~~~~~~~~ 190 (389)
++.+.+..|-|=|+++|-...-.....|.+..|. -+..+..+... +.|-.-|++. |.|-+.|. |...+.+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRn---geI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRN---GEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccC---CcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 5667788888999888764333345789999998 46777666544 5788888875 45666665 6677888
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCeE---EEEcccCCCceEEE--EEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 191 VDFIEQFNEKLLVKQENENLQILDVRNAEL---MEVSRTEFMTPSAF--IFLYENQLFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 191 v~f~~~~~~~l~~~s~D~tIklWd~~tg~~---~~~l~gh~~~v~sv--~fspdg~~laS~s-D~tIklWd~~-G~~l~t 263 (389)
+.....++++|++++.+++|+|||++--+| +++.+||-..-.-+ ...|....+++++ |--.|||.++ |.++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 877744688999999999999999998777 99999996543333 3345566666777 9999999997 999999
Q ss_pred eccCcCCcCCCCeeEEEE
Q 016446 264 FEDHLLWHPDCNTNNIYI 281 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~f 281 (389)
+.-..... ...+++|+|
T Consensus 384 ipf~~s~~-e~d~~sv~~ 400 (425)
T KOG2695|consen 384 IPFPYSAS-EVDIPSVAF 400 (425)
T ss_pred cCCCCccc-cccccceeh
Confidence 87544322 112466666
No 299
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.34 E-value=0.0022 Score=65.18 Aligned_cols=249 Identities=16% Similarity=0.124 Sum_probs=146.9
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC--
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-- 123 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~-- 123 (389)
.+....+||||+.||.+...++.+ ...+++.|+.+|+.... .+. . ....+++|. +||+.+.....|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e-----~~~l~v~Dl~tg~~l~d--~i~--~-~~~~~~~W~-~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSE-----WYTLRVFDLETGKFLPD--GIE--N-PKFSSVSWS-DDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSS-----EEEEEEEETTTTEEEEE--EEE--E-EESEEEEEC-TTSSEEEEEECSTTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCc-----eEEEEEEECCCCcCcCC--ccc--c-cccceEEEe-CCCCEEEEEEeCccc
Confidence 344678999999999876666666 36788899999976211 111 0 111238998 8999887776444
Q ss_pred ---------eEEEEeCCCCe----EEEEecCC-c-EEEEEEc-CCceEEEEecCCCC-eeEEEEEcCCC----eEEEEEe
Q 016446 124 ---------IYKVFDLKNYT----MLYSISDK-H-VQEIKIS-PGIMLLIFNRSSSH-VPLKILSIEDG----TVLKVFY 182 (389)
Q Consensus 124 ---------tiklWdl~~g~----~l~tl~~~-~-V~~vafS-~g~~la~~~~~s~d-~tiklWd~~tG----~~l~tl~ 182 (389)
.|++|.+.++. +++.-... . ...+..| ++++|...+..+.+ ..+.+-++.++ ...+.+.
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~ 273 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS 273 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence 48888887664 34444432 3 6788999 89998877777777 78899998875 2333333
Q ss_pred ecCCce-eEEEEEecCCCeEEEEe----CCCcEEEEECCCCeE---EEEcccCCCceEEEEEcCCC-cEEEEEc-CC--e
Q 016446 183 HLLHRN-KKVDFIEQFNEKLLVKQ----ENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYEN-QLFLTFR-NR--T 250 (389)
Q Consensus 183 ~~~~~~-~~v~f~~~~~~~l~~~s----~D~tIklWd~~tg~~---~~~l~gh~~~v~sv~fspdg-~~laS~s-D~--t 250 (389)
.....+ ..+... ++.+..-+ .++.|---++.+... ...+-.|...+.-..+...+ .++++-. ++ .
T Consensus 274 ~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 274 PREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSR 350 (414)
T ss_dssp ESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEE
T ss_pred CCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccE
Confidence 222222 333332 55554432 456666667776652 33555666543333334444 4455555 55 7
Q ss_pred EEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 251 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 251 IklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
|+++++. +.....+.--.. +.|..+...+++..+.-...+ --.-.+|.-+|+.+|+..
T Consensus 351 l~v~~~~~~~~~~~~~~p~~----g~v~~~~~~~~~~~~~~~~ss-------~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 351 LRVYDLDDGKESREIPLPEA----GSVSGVSGDFDSDELRFSYSS-------FTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEETT-TEEEEEEESSSS----SEEEEEES-TT-SEEEEEEEE-------TTEEEEEEEEETTTTCEE
T ss_pred EEEEECCCCcEEeeecCCcc----eEEeccCCCCCCCEEEEEEeC-------CCCCCEEEEEECCCCCEE
Confidence 8899998 877666553222 125666666666554432211 123478999999998863
No 300
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.33 E-value=0.00014 Score=77.56 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=115.7
Q ss_pred EEEecCCCeEEE-EecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe
Q 016446 106 VEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 106 v~Fs~pdG~~La-s~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~ 182 (389)
+=++ |||+.|- +.-..+.+-+.|.++-+...++. +..-.-++++ +|.++.+++.++ +.|..+..+.
T Consensus 198 ~Plp-nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNs----------E~G~tl~em~ 266 (635)
T PRK02888 198 IPLP-NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNS----------EEGVTLAEMM 266 (635)
T ss_pred cccC-CCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCc----------ccCcceeeec
Confidence 4453 7887663 33457788888988877766665 4555778999 688887764322 3344444442
Q ss_pred ecCCceeEEEEEe-------cCCCeEEEEeCCCcEEEEECCC----C-eEEEEcccCCCceEEEEEcCCCcEEEEEc--C
Q 016446 183 HLLHRNKKVDFIE-------QFNEKLLVKQENENLQILDVRN----A-ELMEVSRTEFMTPSAFIFLYENQLFLTFR--N 248 (389)
Q Consensus 183 ~~~~~~~~v~f~~-------~~~~~l~~~s~D~tIklWd~~t----g-~~~~~l~gh~~~v~sv~fspdg~~laS~s--D 248 (389)
-. ..-..+.|.. +++.+... .+++|.+.|.++ + +.+..+. =...++.|++||||+++..++ +
T Consensus 267 a~-e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 267 AA-ERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred cc-cCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCC
Confidence 10 1124444432 23444333 478999999998 4 4444332 334678899999999988886 9
Q ss_pred CeEEEEeCC-Cc------------EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 249 RTVAVWNFR-GE------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 249 ~tIklWd~~-G~------------~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
.+|-+-|++ -+ .+.+.+--..+ .-.+|.++|....|-.-| ..|-.||+.+
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP------LHTaFDg~G~aytslf~d-----------sqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP------LHTAFDGRGNAYTTLFLD-----------SQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeeccCCCc------ceEEECCCCCEEEeEeec-----------ceeEEEehHH
Confidence 999999986 33 23333322233 478999999988777665 5777899876
No 301
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=3.9e-07 Score=98.19 Aligned_cols=187 Identities=17% Similarity=0.197 Sum_probs=132.3
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEE--EEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcC-CCeEEEE
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE-DGTVLKV 180 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l--~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~-tG~~l~t 180 (389)
.++|| .+-+.|+-|+..|.||++++.+|... ...|+..|.-|--| +|.+++++++.|. --..||++. +|...++
T Consensus 1106 c~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~-PlsaLW~~~s~~~~~Hs 1183 (1516)
T KOG1832|consen 1106 CIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS-PLSALWDASSTGGPRHS 1183 (1516)
T ss_pred eEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC-chHHHhccccccCcccc
Confidence 58998 78889999999999999999999976 44567889999999 8888877754442 245799975 4555566
Q ss_pred EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE-ccc---CCCceEEEEEcCCCcEEEEEcCCeEEEEeC
Q 016446 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRT---EFMTPSAFIFLYENQLFLTFRNRTVAVWNF 256 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~-l~g---h~~~v~sv~fspdg~~laS~sD~tIklWd~ 256 (389)
|. ....|.|+.. -+.-+.|..-....|||++|+..+++ |.+ .+-.-+.+.|||+.+++. .||- |||+
T Consensus 1184 f~----ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndGv--LWDv 1254 (1516)
T KOG1832|consen 1184 FD----EDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDGV--LWDV 1254 (1516)
T ss_pred cc----ccceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCce--eeee
Confidence 54 3467888732 33344455557788999999998887 433 222235578899888774 3553 7998
Q ss_pred C-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 257 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 257 ~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
. .+-++.|.--... -.=.|+|.|.-++--|+ |||+.|=+++++...
T Consensus 1255 R~~~aIh~FD~ft~~------~~G~FHP~g~eVIINSE----------------IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1255 RIPEAIHRFDQFTDY------GGGGFHPSGNEVIINSE----------------IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred ccHHHHhhhhhheec------ccccccCCCceEEeech----------------hhhhHHHHHHhcCcc
Confidence 7 5555555432211 23358999999998653 899998877766543
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.3e-05 Score=81.36 Aligned_cols=261 Identities=15% Similarity=0.153 Sum_probs=168.0
Q ss_pred CccccEEEEEee-ccEEEEEecCceEEEEecc--cc-eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecC-CCcceee
Q 016446 1 MKRTKVIEIVAA-RDIVFALAHSGVCAAFSRE--TN-RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD-NFSSLKC 75 (389)
Q Consensus 1 ~~~~~v~~i~~~-~~~~a~~~~~gtiklW~~~--tg-~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~-d~~~l~~ 75 (389)
|-|--|.-++.. -+++.++|.||.+|.|... .| +.+.-+.. |...|-+++.|-||.+.+|+ .+ |
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFra-HL~~I~sl~~S~dg~L~~Sv----~d~D------ 75 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRA-HLGVILSLAVSYDGWLFRSV----EDPD------ 75 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHH-HHHHHHhhhccccceeEeec----cCcc------
Confidence 557778888877 9999999999999999963 12 23333333 34688999999999999884 35 7
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCC----eEEEEecCCCeEEEEeCCCCeE-E---EEecCCcEEEE
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG----KVLTYSAQDSIYKVFDLKNYTM-L---YSISDKHVQEI 147 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG----~~Las~s~D~tiklWdl~~g~~-l---~tl~~~~V~~v 147 (389)
+.++++|+..=...+..+|- . -|.++.+...-| .+-++.-.++.|-+.|-....| . ..+|-..|..+
T Consensus 76 hs~KvfDvEn~DminmiKL~---~--lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i 150 (558)
T KOG0882|consen 76 HSVKVFDVENFDMINMIKLV---D--LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKI 150 (558)
T ss_pred cceeEEEeeccchhhhcccc---c--CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEE
Confidence 88888888654443233321 1 233443322224 3334455688899998643332 2 23345788888
Q ss_pred EEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc
Q 016446 148 KISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 226 (389)
Q Consensus 148 afS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g 226 (389)
.+++ +....+. ...+.|+-|..+ | ..+..+ ..+. |.+++-+-+--+..
T Consensus 151 ~y~qa~Ds~vSi---D~~gmVEyWs~e-~-~~qfPr------~~l~--------------------~~~K~eTdLy~f~K 199 (558)
T KOG0882|consen 151 RYNQAGDSAVSI---DISGMVEYWSAE-G-PFQFPR------TNLN--------------------FELKHETDLYGFPK 199 (558)
T ss_pred Eeeccccceeec---cccceeEeecCC-C-cccCcc------cccc--------------------ccccccchhhcccc
Confidence 8885 5554333 223688999854 2 121111 1122 22333222222233
Q ss_pred CCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEec--------------------------------cCcCCcC
Q 016446 227 EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--------------------------------DHLLWHP 272 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~--------------------------------gh~~~~~ 272 (389)
-...+.++.|+|+|..+++-+ |.+|++.++. |++++.++ -|....
T Consensus 200 ~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~- 278 (558)
T KOG0882|consen 200 AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTV- 278 (558)
T ss_pred cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcc-
Confidence 445678899999999999998 9999999986 77665443 232221
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
-..+.|...|++|+=|+. =-||+-++.|+++.+.|--
T Consensus 279 ---~~~~~fdes~~flly~t~------------~gikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 279 ---GTNAVFDESGNFLLYGTI------------LGIKVINLDTNTVVRILGK 315 (558)
T ss_pred ---cceeEEcCCCCEEEeecc------------eeEEEEEeecCeEEEEecc
Confidence 256778899999997765 3599999999999998843
No 303
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.29 E-value=2.6e-05 Score=75.61 Aligned_cols=193 Identities=11% Similarity=-0.028 Sum_probs=129.3
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEE--EEec--CCcEEEEEEc--CCceEEEEecCCCCeeEEEEEcC-CCeE
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSIS--DKHVQEIKIS--PGIMLLIFNRSSSHVPLKILSIE-DGTV 177 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l--~tl~--~~~V~~vafS--~g~~la~~~~~s~d~tiklWd~~-tG~~ 177 (389)
++.|+ +-|..++++-.+|.+-+=+-..+.+. ++++ .-+.|-.+|+ .-..+.+ +++|+.+.-||++ .+++
T Consensus 126 slD~~-~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt---GgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 126 SLDIS-TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT---GGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred EEEee-ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe---cCCCceEEEEEecCCcce
Confidence 46787 77888888888888875554444433 2554 3478999999 2445544 4678999999998 5666
Q ss_pred EEE-EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEEcCCCc--EEEEEcCCeEEE
Q 016446 178 LKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQ--LFLTFRNRTVAV 253 (389)
Q Consensus 178 l~t-l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fspdg~--~laS~sD~tIkl 253 (389)
+-+ -+-|...|-++..++|.+-+|++|++|.+|++||.++ |+++.-- .-.+.||.+..+|.-+ +|++.=-+-.||
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki 280 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKI 280 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceE
Confidence 655 4567788999999988889999999999999999984 6665432 2337899999998543 444333344566
Q ss_pred EeCC---Cc---EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE-EEeCCCCe
Q 016446 254 WNFR---GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN-VSSILTGK 317 (389)
Q Consensus 254 Wd~~---G~---~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk-lWd~~tg~ 317 (389)
-+.+ +| .+.+.+.|... +..-.+..-.-+||++|. -|+.|+ +|=.-||+
T Consensus 281 ~~~~~~~~e~~~~~~s~~~hdSl-----~YG~DWd~~~~~lATCsF----------YDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 281 LDSSDKVLEFQIVLPSDKIHDSL-----CYGGDWDSKDSFLATCSF----------YDKKIRQLWLHITGE 336 (339)
T ss_pred EEecccccchheeeeccccccce-----eeccccccccceeeeeec----------cccceeeeeeeccCC
Confidence 6663 44 45556666543 122222112346888764 367766 88655543
No 304
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.25 E-value=2.5e-05 Score=77.17 Aligned_cols=220 Identities=13% Similarity=0.127 Sum_probs=143.5
Q ss_pred CCCeEEEEecCCCeEEEEe-CCCCeEEEEec---CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC----CeEEEEE
Q 016446 111 VNGKVLTYSAQDSIYKVFD-LKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED----GTVLKVF 181 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWd-l~~g~~l~tl~---~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t----G~~l~tl 181 (389)
|-..-+.+.|.|.++|||= ...|+--..++ ...+.+..++ .-.+|..+... +++.-..+.. -..++..
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n---gtvtefs~sedfnkm~~~r~~ 110 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN---GTVTEFALSEDFNKMTFLKDY 110 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec---ceEEEEEhhhhhhhcchhhhh
Confidence 4555688999999999995 44566433443 3578888888 56666655433 3443333221 1233444
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc--EEEEEc-CCeEEEEeC--
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ--LFLTFR-NRTVAVWNF-- 256 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~--~laS~s-D~tIklWd~-- 256 (389)
.-|..++..+-|+. ..+.+++.+.|+.+.--=.+.|..+. ++...-.+. .++-. +.--|- -+.|.+-.+
T Consensus 111 ~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg---~Y~~~~~~t--~~~~d~~~~fvGd~~gqvt~lr~~~ 184 (404)
T KOG1409|consen 111 LAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLG---GYNFETPAS--ALQFDALYAFVGDHSGQITMLKLEQ 184 (404)
T ss_pred hhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCccc---ceEeeccCC--CCceeeEEEEecccccceEEEEEee
Confidence 46888999999985 47888888999887644444444322 111000000 00000 011111 233333333
Q ss_pred C-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE-EEEecCCCCCCCcccc
Q 016446 257 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDE 334 (389)
Q Consensus 257 ~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~-l~tl~gH~~~~~~~~~ 334 (389)
+ -.++.++.+|.+. +.++++.|-.+.|.||+.| ..|-+||+--.+- ...++||.
T Consensus 185 ~~~~~i~~~~~h~~~-----~~~l~Wd~~~~~LfSg~~d-----------~~vi~wdigg~~g~~~el~gh~-------- 240 (404)
T KOG1409|consen 185 NGCQLITTFNGHTGE-----VTCLKWDPGQRLLFSGASD-----------HSVIMWDIGGRKGTAYELQGHN-------- 240 (404)
T ss_pred cCCceEEEEcCcccc-----eEEEEEcCCCcEEEecccc-----------CceEEEeccCCcceeeeeccch--------
Confidence 2 4578899999987 7999999999999998765 7899999864443 45688887
Q ss_pred cCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 335 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+.|..+.+-+--+.|.|+++||.|.+|+.
T Consensus 241 --------------------------~kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 241 --------------------------DKVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred --------------------------hhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 57888889899999999999999999984
No 305
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.22 E-value=8.6e-05 Score=71.48 Aligned_cols=171 Identities=8% Similarity=0.037 Sum_probs=109.9
Q ss_pred CCCeEEEEeCCCCe-EEEEecCCcEEEEEEcCCc------eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEE
Q 016446 121 QDSIYKVFDLKNYT-MLYSISDKHVQEIKISPGI------MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 193 (389)
Q Consensus 121 ~D~tiklWdl~~g~-~l~tl~~~~V~~vafS~g~------~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f 193 (389)
.--.|.+|++.+.. -+..+ -..+.|-|++ +||.+ +.-+..++|...|.+.+..+.. .+.+.|..
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~----y~g~~F~p~s~~~kc~~la~g---G~~g~fd~~~~~tn~~h~~~cd--~snn~v~~ 120 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEF----YTGMTFTPGSFINKCVTLADG---GASGQFDLFACNTNDGHLYQCD--VSNNDVTL 120 (344)
T ss_pred ceeeeEeccccCCchhhEEe----eecccccchHhhccccEEEec---cccceeeeecccCcccceeeec--ccccchhh
Confidence 33456778764332 11111 1345666543 56654 3347899999988776666552 22233322
Q ss_pred E---ecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--CcE-EEEecc
Q 016446 194 I---EQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GEL-VTSFED 266 (389)
Q Consensus 194 ~---~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~--G~~-l~tl~g 266 (389)
. +...-.+..++.|+|+|+-++..+.....+.-.+-.+.+++++||++++++.+ -..|-++.++ ++. +++.+.
T Consensus 121 ~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a 200 (344)
T KOG4532|consen 121 VKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA 200 (344)
T ss_pred hhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec
Confidence 1 11123577789999999999987665443222223389999999999999998 6789899884 664 342322
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
...-+ =..+.||......|.++.| |++-|||++.
T Consensus 201 ~t~D~----gF~~S~s~~~~~FAv~~Qd-----------g~~~I~DVR~ 234 (344)
T KOG4532|consen 201 PTSDH----GFYNSFSENDLQFAVVFQD-----------GTCAIYDVRN 234 (344)
T ss_pred ccCCC----ceeeeeccCcceEEEEecC-----------CcEEEEEecc
Confidence 22111 2678899999999998764 9999999975
No 306
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.20 E-value=0.0016 Score=66.10 Aligned_cols=313 Identities=12% Similarity=0.114 Sum_probs=145.9
Q ss_pred ecccceeeeeeecCCcc----eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCce
Q 016446 29 SRETNRRICFLNVSPDE----VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 104 (389)
Q Consensus 29 ~~~tg~~l~tl~~~~~~----~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~ 104 (389)
|..||-.+-.|..++.. ....=.|.+||+.|+.+|.+. .. ++..+-|+.+|+.. .| +........
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d-g~------~nly~lDL~t~~i~---QL-Tdg~g~~~~ 84 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD-GN------RNLYLLDLATGEIT---QL-TDGPGDNTF 84 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT-SS-------EEEEEETTT-EEE---E----SS-B-TT
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC-CC------cceEEEEcccCEEE---EC-ccCCCCCcc
Confidence 45677777666655321 111125789999999977643 33 77788888888751 12 211101111
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCe--EEEEecCCcEEEEEEc---CCceEEEEecCCC----------------
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKIS---PGIMLLIFNRSSS---------------- 163 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~l~tl~~~~V~~vafS---~g~~la~~~~~s~---------------- 163 (389)
....+ |+.+.|..--..++++-=|+++.+ ++++++..++-...++ ++..++-......
T Consensus 85 g~~~s-~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 85 GGFLS-PDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp T-EE--TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred ceEEe-cCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 23344 788888877667888888999887 5788888887655554 4555533222211
Q ss_pred ---CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe---CCC-cEEEEECCC-CeEEEEcccCCCceEEE-
Q 016446 164 ---HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENE-NLQILDVRN-AELMEVSRTEFMTPSAF- 234 (389)
Q Consensus 164 ---d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s---~D~-tIklWd~~t-g~~~~~l~gh~~~v~sv- 234 (389)
.+.|.--|+.||+....+.. .....-+.|+|.++..|+-+- .|. +-|||=+.+ |.-.+-+..|.. -.++
T Consensus 164 a~p~~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~g 241 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVG 241 (386)
T ss_dssp C---EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEE
T ss_pred hCCCceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-Ccccc
Confidence 23566678999998777763 366688999977777777653 454 347775543 443333333322 1222
Q ss_pred --EEcCCCcEEEEE-----c-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccc-----c
Q 016446 235 --IFLYENQLFLTF-----R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ-----W 300 (389)
Q Consensus 235 --~fspdg~~laS~-----s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~-----~ 300 (389)
-|.|||..|.-- . +..|.=.|+. ++..... +..+ ..-.--||||+++|-=+.|.|-.. .
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~-----~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPW-----CSHFMSSPDGKLFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-S-----EEEEEE-TTSSEEEEEE-------------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCc-----eeeeEEcCCCCEEEecCCCCCccccccccc
Confidence 378999877642 1 3355555664 5432211 1122 235556899999987665533111 0
Q ss_pred cCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec-
Q 016446 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN- 379 (389)
Q Consensus 301 ~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs- 379 (389)
..-+|--|+|+++++++.. .|--|.. .|+. .....+.+. .-+.|||||+.++=.|
T Consensus 315 ~~~~~p~i~~~~~~~~~~~-~l~~h~~------------------sw~v---~~~~~q~~h--Php~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRFR-KLARHDT------------------SWKV---LDGDRQVTH--PHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp ------EEEEEETTTTEEE-EEEE----------------------------BTTBSSTT------EE-TTSSEEEEEE-
T ss_pred eecCCcEEEEeccccCcee-eeeeccC------------------ccee---ecCCCccCC--CCCccCCCCCEEEEECC
Confidence 0113457889999877753 4555641 1110 000011111 3579999999765444
Q ss_pred CCCcEEE
Q 016446 380 RHGLVHV 386 (389)
Q Consensus 380 ~D~tIrl 386 (389)
..|...|
T Consensus 371 ~~G~~~v 377 (386)
T PF14583_consen 371 MEGPPAV 377 (386)
T ss_dssp TTSS-EE
T ss_pred CCCCccE
Confidence 5565444
No 307
>PRK10115 protease 2; Provisional
Probab=98.18 E-value=0.014 Score=64.13 Aligned_cols=243 Identities=10% Similarity=0.156 Sum_probs=138.8
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC---
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD--- 122 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D--- 122 (389)
.+..+.+||||+.|+.+...++++ -.++++.++.+|+.... .+ . ... .+++|+ +||+.|.....|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E-----~~~l~v~d~~tg~~l~~-~i-~--~~~--~~~~w~-~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRR-----QYGIRFRNLETGNWYPE-LL-D--NVE--PSFVWA-NDSWTFYYVRKHPVT 195 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcE-----EEEEEEEECCCCCCCCc-cc-c--Ccc--eEEEEe-eCCCEEEEEEecCCC
Confidence 467788999999988865444443 46677788888874211 11 1 111 358998 899887776543
Q ss_pred ---CeEEEEeCCCC--e--EEEEecCCcEE-EEEEc-CCceEEEEecCCCCeeEEEEEc--CCCeEEEEEeecCCceeEE
Q 016446 123 ---SIYKVFDLKNY--T--MLYSISDKHVQ-EIKIS-PGIMLLIFNRSSSHVPLKILSI--EDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 123 ---~tiklWdl~~g--~--~l~tl~~~~V~-~vafS-~g~~la~~~~~s~d~tiklWd~--~tG~~l~tl~~~~~~~~~v 191 (389)
..|.++++.++ + +++.-..+..+ ++..+ +++.+...+....+..+.+++. .+|+....+..-.+...
T Consensus 196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 273 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY-- 273 (686)
T ss_pred CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE--
Confidence 36778888888 3 45543333333 55556 8888777777777889999994 35553222321111112
Q ss_pred EEEecCCCeEEEEe-C-CCcEEEE--ECC-CCeEEEEcccCC-CceEEEEEcCCCcEEEEEc-CCeEEEEeC--CCcEEE
Q 016446 192 DFIEQFNEKLLVKQ-E-NENLQIL--DVR-NAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVT 262 (389)
Q Consensus 192 ~f~~~~~~~l~~~s-~-D~tIklW--d~~-tg~~~~~l~gh~-~~v~sv~fspdg~~laS~s-D~tIklWd~--~G~~l~ 262 (389)
.+. ..++.+...+ . ..+-+|. ++. .++....+.... ..+..+.+. .+.++++.. ++.-+|+-+ .+..+.
T Consensus 274 ~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~ 351 (686)
T PRK10115 274 SLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVI 351 (686)
T ss_pred EEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceE
Confidence 222 2244444433 1 2333444 554 333323333323 368888887 446666666 776666654 455555
Q ss_pred Eec-cCcCCcCCCCeeEEEEC--CC-CCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 263 SFE-DHLLWHPDCNTNNIYIT--SD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 263 tl~-gh~~~~~~~~v~sv~fS--pd-G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
.+. +.... +..+.++ ++ +.++++.+.. ..-+++..+|+.+++
T Consensus 352 ~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~ss~--------~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 352 GIAFDDPAY-----VTWIAYNPEPETSRLRYGYSSM--------TTPDTLFELDMDTGE 397 (686)
T ss_pred EecCCCCce-----EeeecccCCCCCceEEEEEecC--------CCCCEEEEEECCCCc
Confidence 554 22111 3334455 44 4466665532 355889999998875
No 308
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.18 E-value=0.0039 Score=65.48 Aligned_cols=277 Identities=12% Similarity=0.097 Sum_probs=150.8
Q ss_pred EeeccEEEEEecCceEEEEecccceeeeeeecCCc-----c--eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 10 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPD-----E--VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 10 ~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~-----~--~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
++.+++|...+.++.+...|..||+.+=..+.... . ..+.+++. ++..++. +..+ ..+.-.|
T Consensus 58 vv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v----~~~~------g~v~AlD 126 (488)
T cd00216 58 LVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFF----GTFD------GRLVALD 126 (488)
T ss_pred EEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEE----ecCC------CeEEEEE
Confidence 34477788888899999999999998866554321 0 01111111 2244444 2344 4555567
Q ss_pred eccCCCCCcceeEeeecccC------c-eeEEEecCCCeEEEEe--------cCCCeEEEEeCCCCeEEEEecC------
Q 016446 83 IRRGKPDSGFALFESESLKW------P-GFVEFDDVNGKVLTYS--------AQDSIYKVFDLKNYTMLYSISD------ 141 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~------~-~~v~Fs~pdG~~Las~--------s~D~tiklWdl~~g~~l~tl~~------ 141 (389)
.++|+. +|..+.... + .+..+. ++.+++.. ..++.+.-.|+++|+.+.....
T Consensus 127 ~~TG~~-----~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~ 199 (488)
T cd00216 127 AETGKQ-----VWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPN 199 (488)
T ss_pred CCCCCE-----eeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcC
Confidence 788887 666443222 1 123443 35544432 2367888889999998866531
Q ss_pred ----------------CcEE-EEEEc-CCceEEEEecCC---------------CCeeEEEEEcCCCeEEEEEeecCCce
Q 016446 142 ----------------KHVQ-EIKIS-PGIMLLIFNRSS---------------SHVPLKILSIEDGTVLKVFYHLLHRN 188 (389)
Q Consensus 142 ----------------~~V~-~vafS-~g~~la~~~~~s---------------~d~tiklWd~~tG~~l~tl~~~~~~~ 188 (389)
..|+ +.++. .+.++..+..++ .++.|.-.|+.||+.+-.++.-.+..
T Consensus 200 ~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~ 279 (488)
T cd00216 200 AFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDL 279 (488)
T ss_pred CCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCC
Confidence 1122 24444 245555554332 12478889999999998876211111
Q ss_pred eE------EEEEe---cCCC---eEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE----------
Q 016446 189 KK------VDFIE---QFNE---KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF---------- 246 (389)
Q Consensus 189 ~~------v~f~~---~~~~---~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~---------- 246 (389)
+. ..+.. .+++ .+++++.++.+...|.++|+.+-..+.- ...++.+| +.+.+.+
T Consensus 280 ~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~ 355 (488)
T cd00216 280 WDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQ 355 (488)
T ss_pred cccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCccc
Confidence 11 11110 1222 4666789999999999999987653211 01122233 2222211
Q ss_pred -------c-CCeEEEEeCC-CcEEEEeccCc--------CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 247 -------R-NRTVAVWNFR-GELVTSFEDHL--------LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 247 -------s-D~tIklWd~~-G~~l~tl~gh~--------~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
. ++.+---|+. |+.+-+.+-.. .+.. -..++. .|.+|..++. ||.|.
T Consensus 356 ~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~---~~~~~~--~g~~v~~g~~-----------dG~l~ 419 (488)
T cd00216 356 KKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW---GGSLAT--AGNLVFAGAA-----------DGYFR 419 (488)
T ss_pred ccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc---CcceEe--cCCeEEEECC-----------CCeEE
Confidence 1 2334444443 44433322110 0000 012222 5667777654 59999
Q ss_pred EEeCCCCeEEEEecC
Q 016446 310 VSSILTGKCLAKINA 324 (389)
Q Consensus 310 lWd~~tg~~l~tl~g 324 (389)
-.|..||+.+...+-
T Consensus 420 ald~~tG~~lW~~~~ 434 (488)
T cd00216 420 AFDATTGKELWKFRT 434 (488)
T ss_pred EEECCCCceeeEEEC
Confidence 999999999988753
No 309
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.16 E-value=0.0023 Score=64.23 Aligned_cols=271 Identities=13% Similarity=0.081 Sum_probs=148.5
Q ss_pred eeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC
Q 016446 53 NKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 132 (389)
Q Consensus 53 spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~ 132 (389)
||||+.++.+... ...+..=.-....|+|+.+++. .++... ........|| |||+.||... ++.|.++++.+
T Consensus 1 S~d~~~~l~~~~~-~~~~r~s~~~~y~i~d~~~~~~---~~l~~~--~~~~~~~~~s-P~g~~~~~v~-~~nly~~~~~~ 72 (353)
T PF00930_consen 1 SPDGKFVLFATNY-TKQWRHSFKGDYYIYDIETGEI---TPLTPP--PPKLQDAKWS-PDGKYIAFVR-DNNLYLRDLAT 72 (353)
T ss_dssp -TTSSEEEEEEEE-EEESSSEEEEEEEEEETTTTEE---EESS-E--ETTBSEEEE--SSSTEEEEEE-TTEEEEESSTT
T ss_pred CCCCCeEEEEECc-EEeeeeccceeEEEEecCCCce---EECcCC--ccccccceee-cCCCeeEEEe-cCceEEEECCC
Confidence 7899887775432 1222222235677888888764 223321 2334568998 9999999875 68899999888
Q ss_pred CeEEE-EecC------------------CcEEEEEEc-CCceEEEEecCCC-----------------------------
Q 016446 133 YTMLY-SISD------------------KHVQEIKIS-PGIMLLIFNRSSS----------------------------- 163 (389)
Q Consensus 133 g~~l~-tl~~------------------~~V~~vafS-~g~~la~~~~~s~----------------------------- 163 (389)
++..+ |..+ ..-.++-+| ||++||...-+..
T Consensus 73 ~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 73 GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 76442 2212 012457788 5888876544321
Q ss_pred ----CeeEEEEEcCCCeEEE-EEe----ecCCceeEEEEEecCCCeEEEE--eCC---CcEEEEECCCCeEEEEccc-CC
Q 016446 164 ----HVPLKILSIEDGTVLK-VFY----HLLHRNKKVDFIEQFNEKLLVK--QEN---ENLQILDVRNAELMEVSRT-EF 228 (389)
Q Consensus 164 ----d~tiklWd~~tG~~l~-tl~----~~~~~~~~v~f~~~~~~~l~~~--s~D---~tIklWd~~tg~~~~~l~g-h~ 228 (389)
.-.+.++|+.+|+... ... .-..-+..+.|. +++..++.. ..+ -.+.+.|..+|++....+. ..
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~-~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWS-PDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEE-ETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceec-CCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 1134557887776532 211 112334778886 455545553 333 4567779988877444322 22
Q ss_pred Cce---EEEEEc-CCCcEEEEEc--CCeEEEE--eCCCcEEEEeccCcCCcCCCCe-eEEEECCCCCEEE-EEecCCCcc
Q 016446 229 MTP---SAFIFL-YENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHPDCNT-NNIYITSDQDLII-SYCKAEPED 298 (389)
Q Consensus 229 ~~v---~sv~fs-pdg~~laS~s--D~tIklW--d~~G~~l~tl~gh~~~~~~~~v-~sv~fSpdG~~la-S~s~D~~~~ 298 (389)
.+| ....|. +++..++-.+ ||--.|+ +.+|...+-|+.. .+. | .-+.++++++.|. ++..++
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~~----V~~i~~~d~~~~~iyf~a~~~~--- 303 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DWE----VTSILGWDEDNNRIYFTANGDN--- 303 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS-----EEEEEEEECTSSEEEEEESSGG---
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC-cee----ecccceEcCCCCEEEEEecCCC---
Confidence 333 356665 6666655543 8855555 4567766667633 332 6 4478899987665 443321
Q ss_pred cccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEe
Q 016446 299 QWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 378 (389)
Q Consensus 299 ~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSg 378 (389)
....-|..=++.++..+..|..... .-.++.|||||++++-.
T Consensus 304 ----p~~r~lY~v~~~~~~~~~~LT~~~~----------------------------------~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 304 ----PGERHLYRVSLDSGGEPKCLTCEDG----------------------------------DHYSASFSPDGKYYVDT 345 (353)
T ss_dssp ----TTSBEEEEEETTETTEEEESSTTSS----------------------------------TTEEEEE-TTSSEEEEE
T ss_pred ----CCceEEEEEEeCCCCCeEeccCCCC----------------------------------CceEEEECCCCCEEEEE
Confidence 1112333334442344455554331 11689999999988743
No 310
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.11 E-value=0.00045 Score=66.63 Aligned_cols=225 Identities=11% Similarity=-0.004 Sum_probs=148.3
Q ss_pred CeEEEEecCCCeEEEEeCCCCe-EEEEec--CC---cEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DK---HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 186 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~-~l~tl~--~~---~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~ 186 (389)
-.+||-|+.-|..++|.+++.+ .++... .+ -|...+.+.-..+ . ++.|+|+|+.+++.+- .+... |..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~-i---~sndht~k~~~~~~~s-~~~~~-h~~ 157 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLN-I---ASNDHTGKTMVVSGDS-NKFAV-HNQ 157 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccccee-e---ccCCcceeEEEEecCc-cccee-ecc
Confidence 3589999999999999998666 333332 22 2333333322233 2 3677999999986543 33322 333
Q ss_pred c--eeEEEEEecCCCeEEEEeCCCcEEEEECCC-CeE-EE-EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--C
Q 016446 187 R--NKKVDFIEQFNEKLLVKQENENLQILDVRN-AEL-ME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--G 258 (389)
Q Consensus 187 ~--~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~~-~~-~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~--G 258 (389)
. .++++.+ +|+..+++-+....|-++.+.. ++- ++ ++..-++.-....||.....+|.+. ||++-|||++ +
T Consensus 158 ~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 158 NLTQNSLHYS-NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred ccceeeeEEc-CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 3 5788887 6777777788889999998763 443 33 3455566678889999999999999 9999999995 6
Q ss_pred cEEEEeccCcCCcCCCCeeEEEECCCCC---EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCccccc
Q 016446 259 ELVTSFEDHLLWHPDCNTNNIYITSDQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 335 (389)
Q Consensus 259 ~~l~tl~gh~~~~~~~~v~sv~fSpdG~---~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~ 335 (389)
.+..+... +-+++++.++.+.|||-|- ++.|-.. +-+.+=|+++++-.+.+.--.+. .
T Consensus 237 tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~sEhf------------s~~hv~D~R~~~~~q~I~i~~d~------~ 297 (344)
T KOG4532|consen 237 TPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFISEHF------------SRVHVVDTRNYVNHQVIVIPDDV------E 297 (344)
T ss_pred cchhhhcc-cCCCCCCceEEEEecCCCcceEEEEecCc------------ceEEEEEcccCceeeEEecCccc------c
Confidence 66554432 2233445589999998543 2333221 57888998888766665443310 0
Q ss_pred CCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 336 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
..-+.+.|..-.|+.++..+...+++.-
T Consensus 298 --------------------~~~~tq~ifgt~f~~~n~s~~v~~e~~~ 325 (344)
T KOG4532|consen 298 --------------------RKHNTQHIFGTNFNNENESNDVKNELQG 325 (344)
T ss_pred --------------------ccccccccccccccCCCcccccccchhh
Confidence 0112256888889999988888887653
No 311
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.00024 Score=73.47 Aligned_cols=175 Identities=13% Similarity=0.087 Sum_probs=112.8
Q ss_pred CeEEEEec--CCcEEEEEEc-CCceEEEEecCCCC-eeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CC
Q 016446 133 YTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSH-VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-EN 207 (389)
Q Consensus 133 g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d-~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D 207 (389)
|.-.+.+. ...+..-+++ +++.++..+..... ..+.++|+.+|+..+.+.. .++...-+|+ ||+.+++.+. .|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P~fs-pDG~~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAPAFS-PDGSKLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCccCC-CCCCEEEEEECCC
Confidence 55444454 4578888999 68888777655554 4699999999998877762 3566777887 8898888864 66
Q ss_pred CcEEE--EECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CCeEEEE--eCCCcEEEEeccCcCCcCCCCeeEEEE
Q 016446 208 ENLQI--LDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHPDCNTNNIYI 281 (389)
Q Consensus 208 ~tIkl--Wd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~tIklW--d~~G~~l~tl~gh~~~~~~~~v~sv~f 281 (389)
+...| .|+.+++..+ |..-...-..=.|+|||+.++-.+ .|.-+|| |.+|.-++.+.-+... + ..-.+
T Consensus 260 g~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~---~--~~p~~ 333 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG---N--SNPVW 333 (425)
T ss_pred CCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC---C--cCccC
Confidence 65555 5887777555 333222223456899999998776 5554555 5566654444433332 0 24567
Q ss_pred CCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 282 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 282 SpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
||||++||..+.. ++ .-.|-+-|+.+|.-++.|.
T Consensus 334 SpdG~~i~~~~~~-------~g-~~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 334 SPDGDKIVFESSS-------GG-QWDIDKNDLASGGKIRILT 367 (425)
T ss_pred CCCCCEEEEEecc-------CC-ceeeEEeccCCCCcEEEcc
Confidence 9999999997632 11 1236666666555444444
No 312
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.03 E-value=0.003 Score=63.19 Aligned_cols=275 Identities=12% Similarity=0.151 Sum_probs=156.0
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC-----CcceeEeee
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-----SGFALFESE 98 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~-----~~~~l~~~~ 98 (389)
.+.+.|-++|+.|-.+.... .-.++.||||+.+.+++.|-+.-..+-.---+.+||..+=++. ...+-+.
T Consensus 18 rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-- 92 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-- 92 (342)
T ss_dssp EEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----
T ss_pred eEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe--
Confidence 68899999999999888653 3557889999999998887665544444445667776433221 1110011
Q ss_pred cccCceeEEEecCCCeEEE--EecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcC-CC
Q 016446 99 SLKWPGFVEFDDVNGKVLT--YSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE-DG 175 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~La--s~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~-tG 175 (389)
...+....++| +||+++. -.+.-..|-|=|++..+.+.++..-..+.+=-++.+.+.+.+.+ +++.--.+. .|
T Consensus 93 ~~~~~~~~~ls-~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~D---Gsl~~v~Ld~~G 168 (342)
T PF06433_consen 93 VVPYKNMFALS-ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGD---GSLLTVTLDADG 168 (342)
T ss_dssp BS--GGGEEE--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETT---SCEEEEEETSTS
T ss_pred ecccccceEEc-cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecC---CceEEEEECCCC
Confidence 22344557888 8898765 34566788899998888877776433333333422233333333 334333333 67
Q ss_pred eEEEEEeecCCceeEEEEEe----cCCCeEEEEeCCCcEEEEECCCCeE--EEE---cc---cCCCc----eEEEEEcCC
Q 016446 176 TVLKVFYHLLHRNKKVDFIE----QFNEKLLVKQENENLQILDVRNAEL--MEV---SR---TEFMT----PSAFIFLYE 239 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~----~~~~~l~~~s~D~tIklWd~~tg~~--~~~---l~---gh~~~----v~sv~fspd 239 (389)
+..++-+.-.....+-.|.. ..++.++.-+.+|.|+--|+..... ... +. .-..| -.-+|+++.
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 77654432122222222211 2356777788888888888754432 111 10 00011 123677654
Q ss_pred C-cEEEEE------c--CCeEEEE--eCC-CcEEEEecc-CcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCC
Q 016446 240 N-QLFLTF------R--NRTVAVW--NFR-GELVTSFED-HLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 240 g-~~laS~------s--D~tIklW--d~~-G~~l~tl~g-h~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D 305 (389)
. ++.+-- + |+-=.|| |+. ++.++.++- |. +.+|++|.|.+ +|...+. .+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-------~~Si~Vsqd~~P~L~~~~~----------~~ 311 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-------IDSIAVSQDDKPLLYALSA----------GD 311 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-------ESEEEEESSSS-EEEEEET----------TT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-------cceEEEccCCCcEEEEEcC----------CC
Confidence 4 444321 2 4444566 555 899998873 32 68999999998 4444443 35
Q ss_pred CeEEEEeCCCCeEEEEecC
Q 016446 306 GSINVSSILTGKCLAKINA 324 (389)
Q Consensus 306 ~tIklWd~~tg~~l~tl~g 324 (389)
+++.++|..||+.++++.+
T Consensus 312 ~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 312 GTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TEEEEEETTT--EEEEE--
T ss_pred CeEEEEeCcCCcEEeehhc
Confidence 8999999999999999975
No 313
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.02 E-value=1.9e-05 Score=49.46 Aligned_cols=28 Identities=14% Similarity=0.475 Sum_probs=26.8
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 361 EDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 361 ~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|+++.|+|+++.+++|+.|+.|++|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5899999999999999999999999996
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.97 E-value=0.0015 Score=70.02 Aligned_cols=216 Identities=12% Similarity=0.110 Sum_probs=127.8
Q ss_pred eEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc---------CCceEEEEecCCC
Q 016446 94 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS---------PGIMLLIFNRSSS 163 (389)
Q Consensus 94 l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS---------~g~~la~~~~~s~ 163 (389)
.|+-..-+.+..++|+ |||+++.+.+.+ .+.|.-+..+. ...=+.++|+ +|++... .
T Consensus 228 ~~qV~Vdgnpd~v~~s-pdGk~afvTsyN-------sE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V-----~ 294 (635)
T PRK02888 228 AWQVMVDGNLDNVDTD-YDGKYAFSTCYN-------SEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI-----G 294 (635)
T ss_pred EEEEEeCCCcccceEC-CCCCEEEEeccC-------cccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE-----C
Confidence 4554444566779998 899999887653 22344333332 1111455555 2444433 1
Q ss_pred CeeEEEEEcCC----C-eEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeE------------EEEcc
Q 016446 164 HVPLKILSIED----G-TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL------------MEVSR 225 (389)
Q Consensus 164 d~tiklWd~~t----G-~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~------------~~~l~ 225 (389)
+++|.+.|..+ | +.+..++- ...-+.|+++ ||+.++.+++ .+.+|-+.|+++.+. ....+
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vS-PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTS-PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEEC-CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 36899999988 3 56666652 2555889998 8899888865 899999999988551 22222
Q ss_pred cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCC-----------cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 226 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG-----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G-----------~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
- ...+.-.+|.++|....|-- |..|-.||++. ..+..+.-|..+--++.-..=.-.|||++|++.+.
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 1 22344578999999888877 99999999752 34444443433210000111123789999999875
Q ss_pred CCCcccccCC--CCCeEEEEeCCCCeEEEEecCCC
Q 016446 294 AEPEDQWMEG--SAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 294 D~~~~~~~~s--~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
=..++..-.+ .-..-.|-|| +|.-+.-+..|.
T Consensus 452 ~skdrfl~vgpl~pen~qlidI-sgdkM~lv~d~p 485 (635)
T PRK02888 452 FSKDRFLPVGPLHPENDQLIDI-SGDKMKLVHDGP 485 (635)
T ss_pred cccccccCCCCCCCCcceeEEc-cCCeeEEEecCC
Confidence 3211111111 1133456676 466666664443
No 315
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.038 Score=56.28 Aligned_cols=269 Identities=11% Similarity=0.095 Sum_probs=180.8
Q ss_pred EEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCce
Q 016446 25 CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 104 (389)
Q Consensus 25 iklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~ 104 (389)
+.+++..+.+....+..+ .....++++|+|..+..+.... ++ +--+... .+ ....+-.-...++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~g~~~~v~~~~~-~~----------~~~~~~~-~n-~~~~~~~~g~~~p~ 77 (381)
T COG3391 13 VSVINTGTNKVTAAISLG--RGPGGVAVNPDGTQVYVANSGS-ND----------VSVIDAT-SN-TVTQSLSVGGVYPA 77 (381)
T ss_pred eEEEeecccEEEEEeecC--CCCceeEEcCccCEEEEEeecC-ce----------eeecccc-cc-eeeeeccCCCcccc
Confidence 667777666666666654 3678899999997665543321 12 1111122 11 11111101113455
Q ss_pred eEEEecCCCe-EEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEE
Q 016446 105 FVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 105 ~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl 181 (389)
.++++ ++|. ..+....+..|.+-|.++.+++.+.. +..-..++|+ ++..+..+.......++-+-|..+++.+++.
T Consensus 78 ~i~v~-~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 78 GVAVN-PAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred ceeeC-CCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 68887 5555 77777778999999988888887776 5577889999 5778877755434689999999999999986
Q ss_pred eecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEE-E---cccCCCceEEEEEcCCCcEEEEEc--C--CeEE
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELME-V---SRTEFMTPSAFIFLYENQLFLTFR--N--RTVA 252 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~-~---l~gh~~~v~sv~fspdg~~laS~s--D--~tIk 252 (389)
.--..+ ..+++. |++.++... ..+++|.+.|.++-...+ . .-+-.....-++++|+|+++-... + +++-
T Consensus 157 ~vG~~P-~~~a~~-p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 157 PVGNTP-TGVAVD-PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred ecCCCc-ceEEEC-CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 632223 788887 778866665 589999999987766663 1 112234567789999999666553 3 6888
Q ss_pred EEeCC-CcEEEE-eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 253 VWNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 253 lWd~~-G~~l~t-l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
.-|.. +....+ +..-... -..++++|+|+++-..... .+++.+-|..+.+...+.....
T Consensus 235 ~id~~~~~v~~~~~~~~~~~-----~~~v~~~p~g~~~yv~~~~----------~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 235 KIDTATGNVTATDLPVGSGA-----PRGVAVDPAGKAAYVANSQ----------GGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred EEeCCCceEEEeccccccCC-----CCceeECCCCCEEEEEecC----------CCeEEEEeCCCCceeeeecccc
Confidence 88886 665554 2222211 2579999999999886432 4799999988888888776655
No 316
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.88 E-value=0.00065 Score=65.25 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=95.5
Q ss_pred CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc-EEEEEc-CCeEEEEeCC-C-cEEEEeccCcCCcCCCCeeEEEECC
Q 016446 208 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 208 ~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~-~laS~s-D~tIklWd~~-G-~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
...+.|+++--..+..-..--+.|.+++-.|..+ +++.|+ ||.+-|||.+ + .....|..|... ++.|-|.|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~-----i~eV~FHp 233 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE-----IWEVHFHP 233 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh-----hhheeccC
Confidence 4556777764333222122223488888888555 555666 9999999996 4 356678899887 79999999
Q ss_pred -CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc-cceecccccccC
Q 016446 284 -DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS-SYIRSTVGEALE 361 (389)
Q Consensus 284 -dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 361 (389)
++..|.++|+ ||.+--||. +++.+. + +.+..+ -...-+..+-|. .++-+.+++-..
T Consensus 234 k~p~~Lft~se-----------dGslw~wda-s~~~l~-i-~~~~s~--------~s~WLsgD~v~s~i~i~~ll~~~~~ 291 (319)
T KOG4714|consen 234 KNPEHLFTCSE-----------DGSLWHWDA-STTFLS-I-SNQASV--------ISSWLSGDPVKSRIEITSLLPSRSL 291 (319)
T ss_pred CCchheeEecC-----------CCcEEEEcC-CCceEE-e-cCcccc--------ccccccCCcccceEeeeccccccce
Confidence 7888998865 599999994 456655 2 112000 000000111122 334444444334
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 362 DITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 362 ~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.|.+ |.--|.+|++|+.-+.|.|.++
T Consensus 292 Sins--fDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 292 SINS--FDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred eeee--eeccCceEEeccccceEEEecc
Confidence 5544 5556889999999999988764
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=0.016 Score=56.12 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=71.0
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
.-+|+++|++|.++.-|.++|+.+=.-.-. ..+.+-+.= =|+.++. |-+. .-+++-++.+|..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~----GCy~------g~lYfl~~~tGs~---- 85 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVL----GCYS------GGLYFLCVKTGSQ---- 85 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEE----EEcc------CcEEEEEecchhh----
Confidence 578999999999999999999876432221 334433322 2454444 4444 4555666688865
Q ss_pred eeEeeecccCcee-EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec
Q 016446 93 ALFESESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 140 (389)
Q Consensus 93 ~l~~~~~~~~~~~-v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~ 140 (389)
.|......-+.. ..- .++|+++-.+++|++...=|.+++.|++..+
T Consensus 86 -~w~f~~~~~vk~~a~~-d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 86 -IWNFVILETVKVRAQC-DFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred -eeeeeehhhhccceEE-cCCCceEEEecCCCcEEEecccccceEEecc
Confidence 222122222222 122 2579999999999999999999999998876
No 318
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=5.9e-05 Score=80.33 Aligned_cols=151 Identities=11% Similarity=0.141 Sum_probs=108.7
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCe---------------EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAE---------------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~---------------~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
..++|+ ...++|+.|+.||.+|+--+.+.. .-|+|+||...|.-|.|+.+.|.|-|+. +|.|-
T Consensus 18 ~c~~WN-ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 18 HCAEWN-KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEc-ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 445555 446899999999999999776522 2467899999999999999999999998 99999
Q ss_pred EEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCc
Q 016446 253 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 331 (389)
Q Consensus 253 lWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~ 331 (389)
+|-+- |.-...+...... ..|.++.+..||+.|+-...|. .-+-||-||. |||. + .|+|..
T Consensus 97 VWmlykgsW~EEMiNnRnK---SvV~SmsWn~dG~kIcIvYeDG--avIVGsvdGN-RIwg----K---eLkg~~----- 158 (1189)
T KOG2041|consen 97 VWMLYKGSWCEEMINNRNK---SVVVSMSWNLDGTKICIVYEDG--AVIVGSVDGN-RIWG----K---ELKGQL----- 158 (1189)
T ss_pred EEeeecccHHHHHhhCcCc---cEEEEEEEcCCCcEEEEEEccC--CEEEEeeccc-eecc----h---hcchhe-----
Confidence 99984 7543333333222 2489999999999999988761 1122222332 4553 1 233322
Q ss_pred ccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 332 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
...|.+|||.+.+.-+-..|.++|+||
T Consensus 159 -------------------------------l~hv~ws~D~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 159 -------------------------------LAHVLWSEDLEQALFKKANGETHLYDN 185 (1189)
T ss_pred -------------------------------ccceeecccHHHHHhhhcCCcEEEecc
Confidence 224788999998888889999999886
No 319
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.041 Score=56.04 Aligned_cols=226 Identities=13% Similarity=0.110 Sum_probs=146.9
Q ss_pred CceeEEEecCCC-eEEEEecCCCeEEEEeCCCCeEEEEec-C-CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 102 WPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 102 ~~~~v~Fs~pdG-~~Las~s~D~tiklWdl~~g~~l~tl~-~-~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
++..++.. |+| +..+.-....++..=+.....-..... + ..-..++++ ++.++.... ..+..|.+-|+.+-++
T Consensus 32 ~~~~v~~~-~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~--~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVN-PDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTT--GDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEc-CccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEec--CCCCeEEEEcCcccce
Confidence 55678886 788 333333222255555433111111111 2 334678888 577665553 3357999999888888
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEe---CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE-c-CCeEE
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTVA 252 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s---~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~-s-D~tIk 252 (389)
+.+..- ...-..+++. ++++.+..+. .+++|-+-|-.+++..++......+ ..+++.|+|+.+... . +++|-
T Consensus 109 ~~~~~v-G~~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 109 LGSIPV-GLGPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred eeEeee-ccCCceEEEC-CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence 887762 1234677876 6676776653 4899999999999988875443333 889999999966555 4 99999
Q ss_pred EEeCCCcEEEE------eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE-ecCC
Q 016446 253 VWNFRGELVTS------FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INAT 325 (389)
Q Consensus 253 lWd~~G~~l~t------l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t-l~gH 325 (389)
+-|.++.-+.. ..-+..+ ..++++|||+++-..... +.++++-.-|..+++...+ +..-
T Consensus 186 vi~~~~~~v~~~~~~~~~~~~~~P------~~i~v~~~g~~~yV~~~~--------~~~~~v~~id~~~~~v~~~~~~~~ 251 (381)
T COG3391 186 VIDTSGNSVVRGSVGSLVGVGTGP------AGIAVDPDGNRVYVANDG--------SGSNNVLKIDTATGNVTATDLPVG 251 (381)
T ss_pred EEeCCCcceeccccccccccCCCC------ceEEECCCCCEEEEEecc--------CCCceEEEEeCCCceEEEeccccc
Confidence 99988554432 2222333 689999999977765542 3357898999888887665 2221
Q ss_pred CCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 326 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
+ . .-..++++|+|+.++.....
T Consensus 252 ~---------------------------------~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 252 S---------------------------------G-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred c---------------------------------C-CCCceeECCCCCEEEEEecC
Confidence 1 0 23458899999999888443
No 320
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.0025 Score=66.07 Aligned_cols=209 Identities=12% Similarity=0.088 Sum_probs=133.4
Q ss_pred cCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecc
Q 016446 21 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL 100 (389)
Q Consensus 21 ~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~ 100 (389)
.-..+.+=|.+ |.....+.... ..+..-.|+|+++.|+..+-..+.. ..+.++++.+|+. ..+- ...
T Consensus 171 ~~~~l~~~D~d-g~~~~~l~~~~-~~~~~p~ws~~~~~~~y~~f~~~~~------~~i~~~~l~~g~~---~~i~--~~~ 237 (425)
T COG0823 171 LPYELALGDYD-GYNQQKLTDSG-SLILTPAWSPDGKKLAYVSFELGGC------PRIYYLDLNTGKR---PVIL--NFN 237 (425)
T ss_pred CCceEEEEccC-CcceeEecccC-cceeccccCcCCCceEEEEEecCCC------ceEEEEeccCCcc---ceee--ccC
Confidence 34555566664 77777788765 7899999999999999976543332 5788889888875 1111 133
Q ss_pred cCceeEEEecCCCeEEEEec-CCCeEEEE--eCCCCeEEEEec-CCcE-EEEEEc-CCceEEEEecCCCCeeEEEEEcCC
Q 016446 101 KWPGFVEFDDVNGKVLTYSA-QDSIYKVF--DLKNYTMLYSIS-DKHV-QEIKIS-PGIMLLIFNRSSSHVPLKILSIED 174 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s-~D~tiklW--dl~~g~~l~tl~-~~~V-~~vafS-~g~~la~~~~~s~d~tiklWd~~t 174 (389)
++...-+|| |||+.||-++ .|+...|| |+.+++ +..|. ...+ ..=.|| +|.+++-.+..+..-.|.+-|+++
T Consensus 238 g~~~~P~fs-pDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 238 GNNGAPAFS-PDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred CccCCccCC-CCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 444557898 9999888554 56665555 665555 33354 2222 256678 699998876665555677778777
Q ss_pred CeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCc--EEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc
Q 016446 175 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 175 G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~t--IklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s 247 (389)
++. ..++...+.-..-..+ |++.+|+.-+ .++. |-+.|+.++.-.+.+. +......-.+.|+|+.+...+
T Consensus 316 ~~~-~riT~~~~~~~~p~~S-pdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 316 SQV-TRLTFSGGGNSNPVWS-PDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred Cce-eEeeccCCCCcCccCC-CCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 665 3333222322233334 7888998855 3444 6677777766544443 233444556899999888776
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.75 E-value=0.006 Score=63.55 Aligned_cols=214 Identities=14% Similarity=0.163 Sum_probs=115.3
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl 181 (389)
.|..+.++ |+|+.++-+ .||.+-|......+.... +.-.+.+|++.+..|+-.. ..+|++..--..+..+++
T Consensus 34 ~p~~ls~n-pngr~v~V~-g~geY~iyt~~~~r~k~~---G~g~~~vw~~~n~yAv~~~---~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 34 YPQSLSHN-PNGRFVLVC-GDGEYEIYTALAWRNKAF---GSGLSFVWSSRNRYAVLES---SSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp --SEEEE--TTSSEEEEE-ETTEEEEEETTTTEEEEE---EE-SEEEE-TSSEEEEE-T---TS-EEEEETTEE-TT---
T ss_pred CCeeEEEC-CCCCEEEEE-cCCEEEEEEccCCccccc---CceeEEEEecCccEEEEEC---CCeEEEEEcCccccceEE
Confidence 46789998 999998874 578888888434333222 2234567776556666643 367888532222222233
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCCCc--
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE-- 259 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~G~-- 259 (389)
+-. ..+..+- ++.++.-..++.|.+||+++++.+..+.-. .|..|.|||+|+++|-.++.++-|.+.+-+
T Consensus 106 ~~~-~~~~~If-----~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~ 177 (443)
T PF04053_consen 106 KLP-FSVEKIF-----GGNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAV 177 (443)
T ss_dssp --S-S-EEEEE------SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHH
T ss_pred cCC-cccceEE-----cCcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhc
Confidence 310 1122222 245555444559999999999999987643 389999999999999999778889987744
Q ss_pred ----------EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 016446 260 ----------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 329 (389)
Q Consensus 260 ----------~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~ 329 (389)
.+..+..-... |.+.+|--| -+| ++.. .-||- +..|+. .++. |-+
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~~-----IkSg~W~~d-~fi--YtT~-----------~~lkY--l~~Ge~-~~i~-~ld-- 232 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISER-----IKSGCWVED-CFI--YTTS-----------NHLKY--LVNGET-GIIA-HLD-- 232 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S-------SEEEEETT-EEE--EE-T-----------TEEEE--EETTEE-EEEE-E-S--
T ss_pred ccccccCchhceEEEEEecce-----eEEEEEEcC-EEE--EEcC-----------CeEEE--EEcCCc-ceEE-EcC--
Confidence 44444331222 678888665 222 3321 35665 344543 2222 111
Q ss_pred CcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 330 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
.+++=+.+.|+.+.|+.-.+|+.|...
T Consensus 233 -------------------------------~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 233 -------------------------------KPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp -------------------------------S--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred -------------------------------CceEEEEEEccCCEEEEEECCCCEEEE
Confidence 478889999988899999999888654
No 322
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.72 E-value=9.7e-05 Score=46.12 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=34.5
Q ss_pred CeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 218 AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 218 g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
++++..+..|...|.++.|.|+++++++++ |+++++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 567777889999999999999999999998 99999996
No 323
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.71 E-value=0.027 Score=54.84 Aligned_cols=222 Identities=11% Similarity=0.090 Sum_probs=119.3
Q ss_pred ccEEEEEecCceEEEEeccc------ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccC
Q 016446 13 RDIVFALAHSGVCAAFSRET------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 86 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~t------g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g 86 (389)
|+.||+. .|..|.+-.... |+| ++.....-.=+-|+||||+..||.+. .. .+|++.|+.-.
T Consensus 9 Gk~lAi~-qd~~iEiRsa~Ddf~si~~kc--qVpkD~~PQWRkl~WSpD~tlLa~a~----S~------G~i~vfdl~g~ 75 (282)
T PF15492_consen 9 GKLLAIL-QDQCIEIRSAKDDFSSIIGKC--QVPKDPNPQWRKLAWSPDCTLLAYAE----ST------GTIRVFDLMGS 75 (282)
T ss_pred CcEEEEE-eccEEEEEeccCCchheeEEE--ecCCCCCchheEEEECCCCcEEEEEc----CC------CeEEEEecccc
Confidence 5555544 577777755331 333 45544433457899999999998853 22 56777775422
Q ss_pred CCCCcce---eEeeecccCceeEEEecCC-----CeEEEEecCCCeEEEEeCC-----CCeEEEEec-----CCcEEEEE
Q 016446 87 KPDSGFA---LFESESLKWPGFVEFDDVN-----GKVLTYSAQDSIYKVFDLK-----NYTMLYSIS-----DKHVQEIK 148 (389)
Q Consensus 87 ~~~~~~~---l~~~~~~~~~~~v~Fs~pd-----G~~Las~s~D~tiklWdl~-----~g~~l~tl~-----~~~V~~va 148 (389)
++ +..+ -+..+....+..+.|-++. -..|.--..+|.+|=+-+. .++..++++ .+.|.++.
T Consensus 76 ~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 76 EL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred ee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 21 0000 0111111223345665332 1123334567666666542 344555553 35899999
Q ss_pred EcCC-ceEEEEecCCC-Cee-------EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCc------EEEE
Q 016446 149 ISPG-IMLLIFNRSSS-HVP-------LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN------LQIL 213 (389)
Q Consensus 149 fS~g-~~la~~~~~s~-d~t-------iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~t------IklW 213 (389)
+.|+ +.|++++.... |++ +--|.+-++..- -+++...+|+. -.+|
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py--------------------yk~v~~~~~~~~~~~~~~~~~ 214 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY--------------------YKQVTSSEDDITASSKRRGLL 214 (282)
T ss_pred EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCc--------------------EEEccccCcccccccccccee
Confidence 9986 45555432221 111 222332222111 11122222222 2344
Q ss_pred ECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCc
Q 016446 214 DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHL 268 (389)
Q Consensus 214 d~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~ 268 (389)
.+-+...........+.|..+..||||++||+.. +|.|-||++- -++.+.++-+.
T Consensus 215 ~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 215 RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 4444333222234567899999999999999999 9999999984 66666555443
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.57 E-value=0.11 Score=52.18 Aligned_cols=262 Identities=13% Similarity=0.125 Sum_probs=156.2
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecC----------CCeEEEEeCCCCeEEEEe--cCC-
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLYSI--SDK- 142 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~----------D~tiklWdl~~g~~l~tl--~~~- 142 (389)
..+.+-|-..|++ .+.-..+....+..| |||+.+..++. .--|.+||.+|-++...+ +..
T Consensus 17 ~rv~viD~d~~k~------lGmi~~g~~~~~~~s-pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADSGKL------LGMIDTGFLGNVALS-PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTTTEE------EEEEEEESSEEEEE--TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCCCcE------EEEeecccCCceeEC-CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 3566667666664 221122233457787 89999988763 447999999998877643 321
Q ss_pred ------cEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 016446 143 ------HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 215 (389)
Q Consensus 143 ------~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~ 215 (389)
..+..++| +|.+++...-. --..|-+=|++.++.+.++.- ....-+. |..+..+.+-|.||++.-..+
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N~T-Pa~SVtVVDl~~~kvv~ei~~--PGC~~iy--P~~~~~F~~lC~DGsl~~v~L 164 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQNFT-PATSVTVVDLAAKKVVGEIDT--PGCWLIY--PSGNRGFSMLCGDGSLLTVTL 164 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEEES-SSEEEEEEETTTTEEEEEEEG--TSEEEEE--EEETTEEEEEETTSCEEEEEE
T ss_pred hheecccccceEEccCCcEEEEEccC-CCCeEEEEECCCCceeeeecC--CCEEEEE--ecCCCceEEEecCCceEEEEE
Confidence 23457899 78887765432 236899999999999998872 3444443 223567888899999999888
Q ss_pred C-CCeEEEE----cccCCCceE-EEEEcC-CCcEEEEEcCCeEEEEeCCCcE---EEEec------cCcCCcCCCCeeEE
Q 016446 216 R-NAELMEV----SRTEFMTPS-AFIFLY-ENQLFLTFRNRTVAVWNFRGEL---VTSFE------DHLLWHPDCNTNNI 279 (389)
Q Consensus 216 ~-tg~~~~~----l~gh~~~v~-sv~fsp-dg~~laS~sD~tIklWd~~G~~---l~tl~------gh~~~~~~~~v~sv 279 (389)
. .|+..++ |..-.+++. .=+++. +++++-..-.|.|.-=|+.|+- ...++ .-.+|-|.+. .-+
T Consensus 165 d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~-Q~~ 243 (342)
T PF06433_consen 165 DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW-QLI 243 (342)
T ss_dssp TSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS-S-E
T ss_pred CCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce-eee
Confidence 7 5665433 222122111 122333 3344443337777777776542 22222 1124544332 458
Q ss_pred EECCCCCEEEEEecCCC--cccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccc
Q 016446 280 YITSDQDLIISYCKAEP--EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 357 (389)
Q Consensus 280 ~fSpdG~~laS~s~D~~--~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
|+++..+.|..- +++. +++-..+ ..|-++|+.|+|.+..+.--
T Consensus 244 A~~~~~~rlyvL-Mh~g~~gsHKdpg--teVWv~D~~t~krv~Ri~l~-------------------------------- 288 (342)
T PF06433_consen 244 AYHAASGRLYVL-MHQGGEGSHKDPG--TEVWVYDLKTHKRVARIPLE-------------------------------- 288 (342)
T ss_dssp EEETTTTEEEEE-EEE--TT-TTS-E--EEEEEEETTTTEEEEEEEEE--------------------------------
T ss_pred eeccccCeEEEE-ecCCCCCCccCCc--eEEEEEECCCCeEEEEEeCC--------------------------------
Confidence 888766655542 2210 0010001 24778899999999999742
Q ss_pred cccCCEEEEEECCCCC-EEEEec-CCCcEEEcc
Q 016446 358 EALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 388 (389)
Q Consensus 358 ~~~~~V~svafSpdg~-~LaSgs-~D~tIrlW~ 388 (389)
.++.+|+.|.|.+ .|+..+ .++++.++|
T Consensus 289 ---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 289 ---HPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp ---EEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ---CccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 2678999999998 665554 588999987
No 325
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.065 Score=53.27 Aligned_cols=195 Identities=11% Similarity=0.106 Sum_probs=115.1
Q ss_pred CCCe-EEEEecCCCeEEEEeCCCCeE-EEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecC---
Q 016446 111 VNGK-VLTYSAQDSIYKVFDLKNYTM-LYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL--- 185 (389)
Q Consensus 111 pdG~-~Las~s~D~tiklWdl~~g~~-l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~--- 185 (389)
|++. ++-+.-..+.|.-|+..+|+. .+..+...-....+.++..|+++. .-+.++++++|.....+..-.
T Consensus 34 ~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-----~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 34 PDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-----HGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred CCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-----cccEEEeccCCceeEEeccccCCC
Confidence 4444 555666788888999877763 344444444455666677776653 347888888777643332110
Q ss_pred --CceeEEEEEecCCCeEEEEeC---------CCcEEEEECC-CCeEEEEcccCCCceEEEEEcCCCcEEEEE-c-CCeE
Q 016446 186 --HRNKKVDFIEQFNEKLLVKQE---------NENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTV 251 (389)
Q Consensus 186 --~~~~~v~f~~~~~~~l~~~s~---------D~tIklWd~~-tg~~~~~l~gh~~~v~sv~fspdg~~laS~-s-D~tI 251 (389)
.+-+.+... |+|...+..-. -.+-.||=+. .|..++.+.+|-...+.++|||||+.|--+ + -+.|
T Consensus 109 ~~~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 109 PLNRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CcCCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 122444443 44443333211 1222566555 688888888888889999999999777666 5 6777
Q ss_pred EEEeCC---CcE----EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 252 AVWNFR---GEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 252 klWd~~---G~~----l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
.-+++. |.. ..-.......-+ -.++.-.||.+-+++-.+ -+.|..|+.. |+++..+.-
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~P----DG~~vDadG~lw~~a~~~----------g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLP----DGMAVDADGNLWVAAVWG----------GGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCC----CceEEeCCCCEEEecccC----------CceEEEECCC-CcEEEEEEC
Confidence 777654 321 111111111111 255666777777644321 1389999966 999988876
Q ss_pred CC
Q 016446 325 TN 326 (389)
Q Consensus 325 H~ 326 (389)
..
T Consensus 253 P~ 254 (307)
T COG3386 253 PV 254 (307)
T ss_pred CC
Confidence 63
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00044 Score=70.55 Aligned_cols=198 Identities=12% Similarity=0.122 Sum_probs=130.7
Q ss_pred CCeEEEEecCCCeEEEEeCCC--CeEE-EEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEE--ee
Q 016446 112 NGKVLTYSAQDSIYKVFDLKN--YTML-YSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF--YH 183 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~--g~~l-~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl--~~ 183 (389)
-.+++.++|.||-+|.|--.. |-.. .-+. -..|.+++.| +|-.+.+. +..|+.+|+.|+++=....-+ ..
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv--~d~Dhs~KvfDvEn~DminmiKL~~ 96 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSV--EDPDHSVKVFDVENFDMINMIKLVD 96 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeec--cCcccceeEEEeeccchhhhccccc
Confidence 467999999999999998532 2221 1122 2467888888 77766553 333789999998864433221 11
Q ss_pred cCCceeEEEEEecCC-CeEEEEe-CCCcEEEEECCCCeE--EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 016446 184 LLHRNKKVDFIEQFN-EKLLVKQ-ENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG 258 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~-~~l~~~s-~D~tIklWd~~tg~~--~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G 258 (389)
..+....+. ++-+. ..++++. .++.|.+.|-....| ...-.-|..+|..+-++|-+.-++|.. .|.|+-|..+|
T Consensus 97 lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 97 LPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred CCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence 112222222 11111 1444444 889999999876665 233355999999999999999999998 99999999876
Q ss_pred c-------EEEEeccCcCC-----cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 259 E-------LVTSFEDHLLW-----HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 259 ~-------~l~tl~gh~~~-----~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
. +.-.++ |... -.-.+-.++.|||+|..++.=+. |.+||+.++.+|++++.+..
T Consensus 176 ~~qfPr~~l~~~~K-~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~-----------DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 176 PFQFPRTNLNFELK-HETDLYGFPKAKTEPTSFEFSPDGAQISTLNP-----------DRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cccCcccccccccc-ccchhhcccccccCccceEEccccCcccccCc-----------ccEEEEEEeccchhhhhhhc
Confidence 2 111111 1110 00012368999999999998654 69999999999999988855
No 327
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.52 E-value=0.088 Score=53.74 Aligned_cols=265 Identities=13% Similarity=0.169 Sum_probs=119.3
Q ss_pred ccEEEEEecCceEEEE--ecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCC
Q 016446 13 RDIVFALAHSGVCAAF--SRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 90 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW--~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~ 90 (389)
.+.|+++..+|.-.|| |+++|+-. +|+.+..+.....+.+|+.+.|+-+. .. +.+.--++.+++.
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~----~~------~~l~~vdL~T~e~-- 114 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVK----NG------RSLRRVDLDTLEE-- 114 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEE----TT------TEEEEEETTT--E--
T ss_pred CEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEE----CC------CeEEEEECCcCcE--
Confidence 4677777777776665 56655544 56654323333677888888776532 21 2222233345442
Q ss_pred cceeEeeecccCceeEEEe-cCCCeEEEEecC----------------------CCeEEEEeCCCCeEEEEec-CCcEEE
Q 016446 91 GFALFESESLKWPGFVEFD-DVNGKVLTYSAQ----------------------DSIYKVFDLKNYTMLYSIS-DKHVQE 146 (389)
Q Consensus 91 ~~~l~~~~~~~~~~~v~Fs-~pdG~~Las~s~----------------------D~tiklWdl~~g~~l~tl~-~~~V~~ 146 (389)
..++. ..-.+.....+. +.|+..++-.-. ...|.-=|+.+|+.--.+. ..|+.-
T Consensus 115 -~~vy~-~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 115 -RVVYE-VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGH 192 (386)
T ss_dssp -EEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEE
T ss_pred -EEEEE-CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccC
Confidence 23443 112222333342 356666553211 2244455788888654444 578999
Q ss_pred EEEcC--CceEEEEecCCCCe-eEEEEEcCC-CeEEEEEeecCC-ceeEEEEEecCCCeEEE-E----eCCCcEEEEECC
Q 016446 147 IKISP--GIMLLIFNRSSSHV-PLKILSIED-GTVLKVFYHLLH-RNKKVDFIEQFNEKLLV-K----QENENLQILDVR 216 (389)
Q Consensus 147 vafS~--g~~la~~~~~s~d~-tiklWd~~t-G~~l~tl~~~~~-~~~~v~f~~~~~~~l~~-~----s~D~tIklWd~~ 216 (389)
+.||| ..+|+-+..+--|. +-|+|-+.+ |.-.+.+..|.. .+..=.|-.|+|..|.- + +.+..|.=.|++
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99995 66776666555444 457886553 444444432221 11222333367776665 2 256678888999
Q ss_pred CCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CC----------------eEEEEeCCCcEEEEeccCcC-Cc-----CC
Q 016446 217 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR----------------TVAVWNFRGELVTSFEDHLL-WH-----PD 273 (389)
Q Consensus 217 tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~----------------tIklWd~~G~~l~tl~gh~~-~~-----~~ 273 (389)
+++..+..+ ..+..-+--++||++++.-+ |. -|.|++++..-...|.-|.. |. +.
T Consensus 273 t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q 350 (386)
T PF14583_consen 273 TGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQ 350 (386)
T ss_dssp T--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSS
T ss_pred CCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCc
Confidence 987654322 12333344489999998655 53 45567776332233333321 00 00
Q ss_pred CCeeEEEECCCCCEEEEEecC
Q 016446 274 CNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D 294 (389)
..=.-+.|||||++++=.|.-
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp TT----EE-TTSSEEEEEE-T
T ss_pred cCCCCCccCCCCCEEEEECCC
Confidence 001467899999999987653
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.46 E-value=0.0045 Score=65.11 Aligned_cols=113 Identities=11% Similarity=0.098 Sum_probs=77.3
Q ss_pred CcEEEEEEc---CCceEEEEecCCCCeeE----EEEEcCCCeEE--EEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEE
Q 016446 142 KHVQEIKIS---PGIMLLIFNRSSSHVPL----KILSIEDGTVL--KVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQ 211 (389)
Q Consensus 142 ~~V~~vafS---~g~~la~~~~~s~d~ti----klWd~~tG~~l--~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIk 211 (389)
..-.++.|| |.+....-.+-+.++.+ .++++..++.- .... -+...+.+++++ |+.++++.|++||+|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~s-p~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARS-PSEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecC-cccceEEEEecCCeEE
Confidence 345678888 34444333332333322 23454444322 1111 244677888887 7889999999999999
Q ss_pred EEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 016446 212 ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 257 (389)
Q Consensus 212 lWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~ 257 (389)
|||...+.... ..+.-.+.-++|+|+|-+++.++ -|.+++||+.
T Consensus 285 LyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 285 LYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 99997774433 34556788999999999999999 7999999975
No 329
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.37 E-value=0.28 Score=52.26 Aligned_cols=193 Identities=12% Similarity=0.113 Sum_probs=106.5
Q ss_pred eccEEEEEecCceEEEEecccceeeeeeecCCcceE----------EEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 12 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVI----------RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 12 ~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v----------~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
.+.+|...+.++.|...|.+||+.+=.........+ +.+++. +..|+.+ ..| ..+.--
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~----t~d------g~l~AL 135 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFG----TLD------ARLVAL 135 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEE----cCC------CEEEEE
Confidence 477888888889999999999998876553211111 122332 2344442 233 223333
Q ss_pred EeccCCCCCcceeEeeecccCcee-EEEecC---CCeEEEEec-----CCCeEEEEeCCCCeEEEEecC-----------
Q 016446 82 YIRRGKPDSGFALFESESLKWPGF-VEFDDV---NGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD----------- 141 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~-v~Fs~p---dG~~Las~s-----~D~tiklWdl~~g~~l~tl~~----------- 141 (389)
|..+|+. +|......+... ...++| +|++++..+ .++.|.-.|+++|+.+..++.
T Consensus 136 Da~TGk~-----~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~ 210 (527)
T TIGR03075 136 DAKTGKV-----VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKA 210 (527)
T ss_pred ECCCCCE-----EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccc
Confidence 4577876 554322111000 001112 566665432 378899999999998865431
Q ss_pred ----------------------CcEEE-EEEcC-CceEEEEecC-----C----CCe----eEEEEEcCCCeEEEEEeec
Q 016446 142 ----------------------KHVQE-IKISP-GIMLLIFNRS-----S----SHV----PLKILSIEDGTVLKVFYHL 184 (389)
Q Consensus 142 ----------------------~~V~~-vafS~-g~~la~~~~~-----s----~d~----tiklWd~~tG~~l~tl~~~ 184 (389)
..||. .++-| -.++..+... . .|+ .|-=-|++||+..-.++..
T Consensus 211 ~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~ 290 (527)
T TIGR03075 211 DKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT 290 (527)
T ss_pred ccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC
Confidence 12332 23333 3333333211 1 111 5556799999999888743
Q ss_pred CCceeEEE-------EE-ecCCC---eEEEEeCCCcEEEEECCCCeEE
Q 016446 185 LHRNKKVD-------FI-EQFNE---KLLVKQENENLQILDVRNAELM 221 (389)
Q Consensus 185 ~~~~~~v~-------f~-~~~~~---~l~~~s~D~tIklWd~~tg~~~ 221 (389)
.|-++.-. +- +.+++ .++.++.+|-+.+.|.+||+++
T Consensus 291 ~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 291 PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 33333222 21 12344 3445789999999999999986
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.00018 Score=78.28 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=97.8
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--C-CeEEEEe
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--N-RTVAVWN 255 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D-~tIklWd 255 (389)
++|..|......++|+ -+...|+.|+..|.||++|+.+|.-....+.|+.+|+-|-=|-||.++++.+ . --..||+
T Consensus 1095 ~~frd~~~~fTc~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhhccccceeeEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 4566666677889998 5567888899999999999999999999999999999998888999888774 3 3788999
Q ss_pred CC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 256 FR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 256 ~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
+. |....+|.+- ..|.||..-+.-|-|+.- ..+-|+|++|+..+.|+
T Consensus 1174 ~~s~~~~~Hsf~ed---------~~vkFsn~~q~r~~gt~~-----------d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDED---------KAVKFSNSLQFRALGTEA-----------DDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred cccccCcccccccc---------ceeehhhhHHHHHhcccc-----------cceEEEecccCcHHHHh
Confidence 94 7778777643 478898876655555432 35779999999888883
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.29 E-value=0.26 Score=51.78 Aligned_cols=231 Identities=10% Similarity=0.093 Sum_probs=125.4
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCCcc-----eEEEEEEeeCCCEEEEEEEeecCCC-cceeeeeeeEeEeccCC
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSPDE-----VIRSLFYNKNNDSLITVSVYASDNF-SSLKCRSTKIEYIRRGK 87 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~-----~v~sv~~spdg~~l~s~s~~~~~d~-~~l~~~~~~l~~i~~g~ 87 (389)
+.|..++.+|.+..+|.+||+.+=........ ...+..+. +..++.++.. .++ ..-....+.--|..+|+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~--~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSG--AEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccc--cccccCCCCcEEEEEECCCCc
Confidence 88999999999999999999998766543210 11122222 2334432211 110 00001334445667787
Q ss_pred CCCcceeEeeeccc---------------------Cce-eEEEecCCCeEEEEecCCC------------------eEEE
Q 016446 88 PDSGFALFESESLK---------------------WPG-FVEFDDVNGKVLTYSAQDS------------------IYKV 127 (389)
Q Consensus 88 ~~~~~~l~~~~~~~---------------------~~~-~v~Fs~pdG~~Las~s~D~------------------tikl 127 (389)
. +|..+... .++ +.+++ +.+.++..++.|+ +|--
T Consensus 187 ~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~A 260 (488)
T cd00216 187 L-----LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVA 260 (488)
T ss_pred e-----eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEE
Confidence 6 55422110 011 24554 3333444444443 7888
Q ss_pred EeCCCCeEEEEecC--CcEEE--E----EEc-----CCc---eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 128 FDLKNYTMLYSISD--KHVQE--I----KIS-----PGI---MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 128 Wdl~~g~~l~tl~~--~~V~~--v----afS-----~g~---~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
.|+++|+++...+. ...+. . .+. +|. .++.++ .++.+.-.|.+||+.+-..+.. ...+
T Consensus 261 ld~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~---~~G~l~ald~~tG~~~W~~~~~---~~~~ 334 (488)
T cd00216 261 LDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP---KNGFFYVLDRTTGKLISARPEV---EQPM 334 (488)
T ss_pred EcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC---CCceEEEEECCCCcEeeEeEee---cccc
Confidence 89999999876641 21211 1 111 232 344442 3478999999999999876521 1111
Q ss_pred EEEecCCCeEEEE------------------eCCCcEEEEECCCCeEEEEcccC--C------Cce--EEEEEcCCCcEE
Q 016446 192 DFIEQFNEKLLVK------------------QENENLQILDVRNAELMEVSRTE--F------MTP--SAFIFLYENQLF 243 (389)
Q Consensus 192 ~f~~~~~~~l~~~------------------s~D~tIklWd~~tg~~~~~l~gh--~------~~v--~sv~fspdg~~l 243 (389)
+.. ++.+... ..++.+.-.|+.+|+.+-..... . ... ..++ -.+.+|
T Consensus 335 ~~~---~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v 409 (488)
T cd00216 335 AYD---PGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLV 409 (488)
T ss_pred ccC---CceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeE
Confidence 211 1222221 24677888888888876554322 0 011 1111 245566
Q ss_pred EEEc-CCeEEEEeCC-CcEEEEec
Q 016446 244 LTFR-NRTVAVWNFR-GELVTSFE 265 (389)
Q Consensus 244 aS~s-D~tIklWd~~-G~~l~tl~ 265 (389)
..++ ||.+...|.+ |+++-+++
T Consensus 410 ~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 410 FAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEECCCCeEEEEECCCCceeeEEE
Confidence 6666 9999999996 99987765
No 332
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.27 E-value=0.0015 Score=62.79 Aligned_cols=159 Identities=8% Similarity=0.098 Sum_probs=96.1
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEEcccCCCceEEEEEcCCCcEEEEEcC------CeE
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFRN------RTV 251 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-~~~l~gh~~~v~sv~fspdg~~laS~sD------~tI 251 (389)
++|..|+.+-..-+.+. .+..++++..|+.+-+.+.+.-.. .+..+.-....-+......++.+.++.= +..
T Consensus 83 ~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence 34444444333333332 255778888999999988765111 1111111111222333445666655532 334
Q ss_pred EEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE-EEEecCCCCC
Q 016446 252 AVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCS 328 (389)
Q Consensus 252 klWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~-l~tl~gH~~~ 328 (389)
+.|+++ +.+.. .+... ..|.+++-.|..+.++.++.| ||.|-|||..+... .-.|..|.
T Consensus 162 ~a~~~~p~~t~~~---~~~~~---~~v~~l~~hp~qq~~v~cgt~----------dg~~~l~d~rn~~~p~S~l~ahk-- 223 (319)
T KOG4714|consen 162 YANTLDPIKTLIP---SKKAL---DAVTALCSHPAQQHLVCCGTD----------DGIVGLWDARNVAMPVSLLKAHK-- 223 (319)
T ss_pred eeecccccccccc---ccccc---ccchhhhCCcccccEEEEecC----------CCeEEEEEcccccchHHHHHHhh--
Confidence 566664 32221 11211 127888999988777766543 79999999987643 34467776
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECC-CCCEEEEecCCCcEEEcc
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp-dg~~LaSgs~D~tIrlW~ 388 (389)
..|+.|-|+| ++..|.++|+||.+--||
T Consensus 224 --------------------------------~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 224 --------------------------------AEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred --------------------------------hhhhheeccCCCchheeEecCCCcEEEEc
Confidence 6999999999 568899999999998887
No 333
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.27 E-value=0.16 Score=51.53 Aligned_cols=206 Identities=14% Similarity=0.109 Sum_probs=112.7
Q ss_pred eeEEEecCCCeEEEEe-----cCCCeEEEEeCCCCeEEE-EecCCcEEEEEEc-CCceEEEEecCCC--------CeeEE
Q 016446 104 GFVEFDDVNGKVLTYS-----AQDSIYKVFDLKNYTMLY-SISDKHVQEIKIS-PGIMLLIFNRSSS--------HVPLK 168 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~-----s~D~tiklWdl~~g~~l~-tl~~~~V~~vafS-~g~~la~~~~~s~--------d~tik 168 (389)
...++| |||++||.+ +...++++.|+++|+.+. .+....-..++|+ +|..+.....+.. ...|+
T Consensus 127 ~~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 357887 999999855 233579999999998764 3332222238999 6677766655543 56789
Q ss_pred EEEcCCCeEE--EEEeecCCc--eeEEEEEecCCCeEEEEe---CC-CcEEEEECCCC----eEEEEcccCCCceEEEEE
Q 016446 169 ILSIEDGTVL--KVFYHLLHR--NKKVDFIEQFNEKLLVKQ---EN-ENLQILDVRNA----ELMEVSRTEFMTPSAFIF 236 (389)
Q Consensus 169 lWd~~tG~~l--~tl~~~~~~--~~~v~f~~~~~~~l~~~s---~D-~tIklWd~~tg----~~~~~l~gh~~~v~sv~f 236 (389)
+|.+-+++.- ..+...... ...+..+ .++..+++.+ .+ ..+.+-|+..+ ...+.+..+...+...+-
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 9998776532 344432233 3456655 6777777643 34 55788888875 233333344444544444
Q ss_pred cCCCcEEEEEc----CCeEEEEeCC-Cc---EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 237 LYENQLFLTFR----NRTVAVWNFR-GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 237 spdg~~laS~s----D~tIklWd~~-G~---~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
..++.+++... .+.|---++. .. -...+-.|...+ .+..+ +..+++|+-...++ -...|
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~---~l~~~--~~~~~~Lvl~~~~~--------~~~~l 351 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV---SLEDV--SLFKDYLVLSYREN--------GSSRL 351 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE---EEEEE--EEETTEEEEEEEET--------TEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce---eEEEE--EEECCEEEEEEEEC--------CccEE
Confidence 44665555442 3444444554 32 122444444321 13333 34555555544431 12478
Q ss_pred EEEeCCCCeEEEEecC
Q 016446 309 NVSSILTGKCLAKINA 324 (389)
Q Consensus 309 klWd~~tg~~l~tl~g 324 (389)
+++|+..++....+..
T Consensus 352 ~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 352 RVYDLDDGKESREIPL 367 (414)
T ss_dssp EEEETT-TEEEEEEES
T ss_pred EEEECCCCcEEeeecC
Confidence 9999774666555543
No 334
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.25 E-value=0.049 Score=58.88 Aligned_cols=250 Identities=11% Similarity=0.048 Sum_probs=154.7
Q ss_pred ccEEEEEecCceEEEEecccce---------------eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 13 RDIVFALAHSGVCAAFSRETNR---------------RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~---------------~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
..+||++..||.+|+-+++|.. .=++|.||. ..|+-|.|+.+.|.|-+ +..+ .-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~-~sV~vvTWNe~~QKLTt----SDt~------Gl 94 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN-ASVMVVTWNENNQKLTT----SDTS------GL 94 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc-ceEEEEEeccccccccc----cCCC------ce
Confidence 6799999999999999987521 113677875 89999999999999877 3344 56
Q ss_pred eeEeEeccCCCC-----CcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE--EEecCCcEEEEEEc
Q 016446 78 TKIEYIRRGKPD-----SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKIS 150 (389)
Q Consensus 78 ~~l~~i~~g~~~-----~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l--~tl~~~~V~~vafS 150 (389)
|-+|.+-.|... .+.+ .-+.+.++. .||+.++..=.||.|-+=.+ +|..+ ..|++.....|..|
T Consensus 95 IiVWmlykgsW~EEMiNnRnK-------SvV~SmsWn-~dG~kIcIvYeDGavIVGsv-dGNRIwgKeLkg~~l~hv~ws 165 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNK-------SVVVSMSWN-LDGTKICIVYEDGAVIVGSV-DGNRIWGKELKGQLLAHVLWS 165 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCc-------cEEEEEEEc-CCCcEEEEEEccCCEEEEee-ccceecchhcchheccceeec
Confidence 778988777651 2211 113456775 67777777777777766554 34433 23444444567778
Q ss_pred C-CceEEEEecCCCCeeEEEEEcCC-------CeEEEEEee----cCCceeEEEE-------EecCCCeEEEEeCCCcEE
Q 016446 151 P-GIMLLIFNRSSSHVPLKILSIED-------GTVLKVFYH----LLHRNKKVDF-------IEQFNEKLLVKQENENLQ 211 (389)
Q Consensus 151 ~-g~~la~~~~~s~d~tiklWd~~t-------G~~l~tl~~----~~~~~~~v~f-------~~~~~~~l~~~s~D~tIk 211 (389)
+ ...++.. -..+.+.|.|-+. -+|+.+.++ ..+.+.++.+ ++|+--.++..-.+|.++
T Consensus 166 ~D~~~~Lf~---~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 166 EDLEQALFK---KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred ccHHHHHhh---hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 4 3322221 1224667777442 123322221 1122333333 345556777787888887
Q ss_pred EEECCC-CeEEEEcccCCCceEEEEEcCCCcEEEEEc-C---------CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEE
Q 016446 212 ILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-N---------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIY 280 (389)
Q Consensus 212 lWd~~t-g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D---------~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~ 280 (389)
|---++ -+++-.-.| ..+...-|+|+|..||.++ | +.|..+..-|+.+.||+-... .|.++.
T Consensus 243 iMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~-----~It~ls 315 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGS-----CITGLS 315 (1189)
T ss_pred hhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCc-----eeeeeE
Confidence 754332 233322222 5677788999999999775 3 367777767888888874433 267888
Q ss_pred ECCCCCEEEEEe
Q 016446 281 ITSDQDLIISYC 292 (389)
Q Consensus 281 fSpdG~~laS~s 292 (389)
+-.-|-.||.+-
T Consensus 316 WEg~gLriA~Av 327 (1189)
T KOG2041|consen 316 WEGTGLRIAIAV 327 (1189)
T ss_pred EcCCceEEEEEe
Confidence 877777777653
No 335
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.039 Score=60.04 Aligned_cols=235 Identities=13% Similarity=0.145 Sum_probs=151.5
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-------C-----c-eEEEEecCCCCeeEEE
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-------G-----I-MLLIFNRSSSHVPLKI 169 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-------g-----~-~la~~~~~s~d~tikl 169 (389)
++.++ |.| ++|.|+. ..|-|=|..+.+.++++. ...|..|+++| + + +||++ .-.+.|-|
T Consensus 20 A~Dw~-~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa---D~~GrIil 93 (1062)
T KOG1912|consen 20 AADWS-PSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA---DISGRIIL 93 (1062)
T ss_pred ccccC-ccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEec---cccCcEEE
Confidence 57786 655 8998886 467788988999888775 56899999874 1 1 33333 33478999
Q ss_pred EEcCCCeEEEEEeecCCceeEEEEEec--CC-CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC-CCcEEE-
Q 016446 170 LSIEDGTVLKVFYHLLHRNKKVDFIEQ--FN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFL- 244 (389)
Q Consensus 170 Wd~~tG~~l~tl~~~~~~~~~v~f~~~--~~-~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-dg~~la- 244 (389)
||...+-.+..|+.|..++..+.|.+. +. +.|++-..-.+|-|||..||+.+-....-......+.|-| |.+.+.
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 999999999999998899988888633 22 4667778889999999999998765443334555567766 333333
Q ss_pred EEcCCeEEEEeC--------CCcEEEEeccCcCCcC------------CC--------CeeEEEECCCCCEEEEEecCCC
Q 016446 245 TFRNRTVAVWNF--------RGELVTSFEDHLLWHP------------DC--------NTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 245 S~sD~tIklWd~--------~G~~l~tl~gh~~~~~------------~~--------~v~sv~fSpdG~~laS~s~D~~ 296 (389)
.++.|.+-+-+. -|+..+.-..|..... .+ +.-..+|+|.-+-++-.-.
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~--- 250 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF--- 250 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe---
Confidence 333666655552 2455554445443100 00 1123567886443322222
Q ss_pred cccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE
Q 016446 297 EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 376 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La 376 (389)
-.-+-|.|++=.+|+.+..-.. ++ .+.-.+-=.|...-|+
T Consensus 251 --------prellv~dle~~~~l~vvpier-----------~~---------------------akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 251 --------PRELLVFDLEYECCLAVVPIER-----------GG---------------------AKFVDVLPDPRRDALF 290 (1062)
T ss_pred --------ccceEEEcchhhceeEEEEecc-----------CC---------------------cceeEeccCCCcceEE
Confidence 1568899998888887764433 11 1332333334445799
Q ss_pred EecCCCcEEEcc
Q 016446 377 TGNRHGLVHVWS 388 (389)
Q Consensus 377 Sgs~D~tIrlW~ 388 (389)
+.=.||-+.+|.
T Consensus 291 clH~nG~ltirv 302 (1062)
T KOG1912|consen 291 CLHSNGRLTIRV 302 (1062)
T ss_pred EEecCCeEEEEE
Confidence 999999998884
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.18 E-value=0.0014 Score=68.94 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=55.7
Q ss_pred eeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecc
Q 016446 276 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 355 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
|.+.+++|+.+.|+-||.| |+|.|||..++ +.++.-+.
T Consensus 262 v~~ca~sp~E~kLvlGC~D-----------gSiiLyD~~~~--~t~~~ka~----------------------------- 299 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCED-----------GSIILYDTTRG--VTLLAKAE----------------------------- 299 (545)
T ss_pred ceEEecCcccceEEEEecC-----------CeEEEEEcCCC--eeeeeeec-----------------------------
Confidence 7899999999999999986 99999997655 33332222
Q ss_pred cccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 356 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 356 ~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
-...-++++|+|.+++.|++-|.+.+||.
T Consensus 300 -----~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 300 -----FIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred -----ccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 25678999999999999999999999984
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.14 E-value=0.029 Score=63.44 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=125.5
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE-EecCCcEEEEEEc-CCceEEEEecCCCCeeEEE----EEcCCCe
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKI----LSIEDGT 176 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~-tl~~~~V~~vafS-~g~~la~~~~~s~d~tikl----Wd~~tG~ 176 (389)
+-++.|- .++..|.-+..+|.|-+=|.++...-. ..-.+.|.+..+| |++++|..... +|+-+ |++-.-+
T Consensus 71 i~s~~fl-~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~---~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 71 IVSVQFL-ADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGR---QTLLFMTKDFEPIAEK 146 (1265)
T ss_pred eEEEEEe-cccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCC---cEEEEEeccccchhcc
Confidence 4467776 566666666777888888888777433 3336889999999 57777655221 33322 2211111
Q ss_pred EE-EEEeecCCce------eEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEEcccCCCceEEEEEcCCCcEEEEE--
Q 016446 177 VL-KVFYHLLHRN------KKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTF-- 246 (389)
Q Consensus 177 ~l-~tl~~~~~~~------~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-~~~l~gh~~~v~sv~fspdg~~laS~-- 246 (389)
.| .....-+.++ .+-+|. -..++.++.. ....+. +.. ....+.-.+|.|--||+++|..
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfr-gs~gr~~~~~---------~~~~ek~~~~-~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFR-GSEGRQAARQ---------KIEKEKALEQ-IEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred ccccccccccccceecccccceeee-cchhhhcccc---------cccccccccc-hhhccCCceEEEccCCcEEEEEEE
Confidence 11 0000000000 111221 0011111110 000000 000 0122234568999999999984
Q ss_pred ---cC-CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 247 ---RN-RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 247 ---sD-~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
.+ ++||+||.+|.|-.+=+..... =.++++=|.|..||+--.+ .+|++|.++- .+|-.-..+
T Consensus 216 ~~~~~~RkirV~drEg~Lns~se~~~~l-----~~~LsWkPsgs~iA~iq~~--------~sd~~IvffE-rNGL~hg~f 281 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDREGALNSTSEPVEGL-----QHSLSWKPSGSLIAAIQCK--------TSDSDIVFFE-RNGLRHGEF 281 (1265)
T ss_pred eccCCceeEEEecccchhhcccCccccc-----ccceeecCCCCeEeeeeec--------CCCCcEEEEe-cCCcccccc
Confidence 26 8999999997654332221111 1478999999999987654 5677899997 556431111
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEE---ecCCCcEEEcc
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT---GNRHGLVHVWS 388 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaS---gs~D~tIrlW~ 388 (389)
.- ..+..-..|..|+|+.++..||. ..+...|+||-
T Consensus 282 ~l------------------------------~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 282 VL------------------------------PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred cc------------------------------CCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 00 00000124899999999999998 66666799994
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.08 E-value=0.29 Score=47.28 Aligned_cols=182 Identities=14% Similarity=0.158 Sum_probs=104.7
Q ss_pred ceeEEEecCC-CeEEEEecCCCeEEEEeCCCCeEEEEec--C-CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCC--Ce
Q 016446 103 PGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSIS--D-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED--GT 176 (389)
Q Consensus 103 ~~~v~Fs~pd-G~~Las~s~D~tiklWdl~~g~~l~tl~--~-~~V~~vafS~g~~la~~~~~s~d~tiklWd~~t--G~ 176 (389)
+..++|. |+ +.+.|.....+.|---++ +|+.+.+++ + +...+|++-.++.++..+ ..++++.+.++.. ..
T Consensus 24 ~SGLTy~-pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~--Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 24 LSGLTYN-PDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSE--ERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp EEEEEEE-TTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEE--TTTTEEEEEEE----TT
T ss_pred ccccEEc-CCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEE--cCCCcEEEEEEeccccc
Confidence 3469998 65 666666777788876675 789887775 3 578999999444444442 3457888877732 11
Q ss_pred E----EEEEe--e---cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC---CeEEEE--c------ccCCCceEEEEE
Q 016446 177 V----LKVFY--H---LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---AELMEV--S------RTEFMTPSAFIF 236 (389)
Q Consensus 177 ~----l~tl~--~---~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t---g~~~~~--l------~gh~~~v~sv~f 236 (389)
. .+.+. . +-.....+++. +.++.++++.+....+|+.+.. +..+.. . ...-..+.+++|
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D-~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYD-PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEE-TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEc-CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 1 12232 1 11235789998 5577888888888888888764 222221 1 123446889999
Q ss_pred cCC-CcEEEEEc-CCeEEEEeCCCcEEEEec--c--Cc--CCcCCCCeeEEEECCCCCEEEEE
Q 016446 237 LYE-NQLFLTFR-NRTVAVWNFRGELVTSFE--D--HL--LWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 237 spd-g~~laS~s-D~tIklWd~~G~~l~tl~--g--h~--~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
.|. |++++-+. .+.|-..|.+|+.+..+. . |. ..++. -..|+|.|||++.++.
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~Q--pEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQ--PEGIAFDPDGNLYIVS 239 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---S--EEEEEE-TT--EEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCC--ccEEEECCCCCEEEEc
Confidence 875 67777776 899999998899776544 2 11 01111 3689999999988873
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.02 E-value=0.15 Score=49.18 Aligned_cols=191 Identities=17% Similarity=0.209 Sum_probs=105.7
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEE
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 117 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~La 117 (389)
.|.+-. +-+-.|+|+|+.++|.++. ..+ ..+.--+ .+|++....++ .-++-+..|++. .+|++++
T Consensus 16 ~l~g~~-~e~SGLTy~pd~~tLfaV~---d~~------~~i~els-~~G~vlr~i~l---~g~~D~EgI~y~-g~~~~vl 80 (248)
T PF06977_consen 16 PLPGIL-DELSGLTYNPDTGTLFAVQ---DEP------GEIYELS-LDGKVLRRIPL---DGFGDYEGITYL-GNGRYVL 80 (248)
T ss_dssp E-TT---S-EEEEEEETTTTEEEEEE---TTT------TEEEEEE-TT--EEEEEE----SS-SSEEEEEE--STTEEEE
T ss_pred ECCCcc-CCccccEEcCCCCeEEEEE---CCC------CEEEEEc-CCCCEEEEEeC---CCCCCceeEEEE-CCCEEEE
Confidence 345544 3489999999999998864 222 2222222 56776322222 234556779997 7888888
Q ss_pred EecCCCeEEEEeCCCCe------EEEEec------C-CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCC---CeEEEE
Q 016446 118 YSAQDSIYKVFDLKNYT------MLYSIS------D-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED---GTVLKV 180 (389)
Q Consensus 118 s~s~D~tiklWdl~~g~------~l~tl~------~-~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~t---G~~l~t 180 (389)
+.-.++++.+.++.... ....+. + ..+..|++.+ ++.|..+. ...+.+|+.+.. +..+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceee
Confidence 77679999999983211 112221 2 3699999995 56666653 235777776653 333332
Q ss_pred Ee--------ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc--cc-------CCCceEEEEEcCCCcEE
Q 016446 181 FY--------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RT-------EFMTPSAFIFLYENQLF 243 (389)
Q Consensus 181 l~--------~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l--~g-------h~~~v~sv~fspdg~~l 243 (389)
.. ....-.-+++|.+..+..++.+.+++.|-..| .+|+.+..+ .. ...+...|||.|+|++.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 21 12233477888865566666688999999999 578876543 22 12479999999999998
Q ss_pred EEEc
Q 016446 244 LTFR 247 (389)
Q Consensus 244 aS~s 247 (389)
+++-
T Consensus 237 IvsE 240 (248)
T PF06977_consen 237 IVSE 240 (248)
T ss_dssp EEET
T ss_pred EEcC
Confidence 8775
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.90 E-value=0.55 Score=48.42 Aligned_cols=49 Identities=12% Similarity=0.229 Sum_probs=36.8
Q ss_pred eEEEEeCCCCeEEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 124 IYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 124 tiklWdl~~g~~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
.|++++. .|+++.++. .+.|-++.|++...|+.-. .|+++++.|+. |+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~---~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQ---SDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEE---cCCEEEEEeCC-Cce
Confidence 5999996 888887764 5789999999655444432 34799999986 565
No 341
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.88 E-value=0.015 Score=64.03 Aligned_cols=178 Identities=15% Similarity=0.171 Sum_probs=119.6
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCC
Q 016446 197 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 274 (389)
Q Consensus 197 ~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~ 274 (389)
.++.++.|+.-..|--.|+.+++..++.+-.... ....-.+++++.+|. -|+|-|-|.+ -+.++++..|++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s---- 219 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS---- 219 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc--eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc----
Confidence 3567888886667777888887776664332222 344567889999998 9999999997 8899999999975
Q ss_pred CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCC------C----CcccccCCCC--CCC
Q 016446 275 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS------P----KVDDELGSSS--TGK 342 (389)
Q Consensus 275 ~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~------~----~~~~~~~~~~--~~~ 342 (389)
| .+|+-.|..|++++... .+---.-|.=||+||++.=+.+..++=|-+- | -.++.+++|+ -+.
T Consensus 220 -i--SDfDv~GNlLitCG~S~--R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 220 -I--SDFDVQGNLLITCGYSM--RRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred -e--eeeeccCCeEEEeeccc--ccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecc
Confidence 2 35777899999987531 0001113567999999876666555443321 0 1124455554 222
Q ss_pred ccccccc---cceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 343 SKKLNKS---SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 343 ~~~~~~~---~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+.++-|- ..+.+..+ ..+.+..+||.|+-||-|..+|-|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~---s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNG---SGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCC---CcceeEEecCCCceEEEecccCcEeeec
Confidence 2233321 12222222 4699999999999999999999999994
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.84 E-value=0.18 Score=52.01 Aligned_cols=51 Identities=22% Similarity=0.357 Sum_probs=41.7
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 220 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~ 220 (389)
.|++++ ..|+.+.++.--.+++-.+.|.. .+.|+.-..||+++++|+. |+.
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-Cce
Confidence 588999 57899988875557888888863 7889998999999999996 555
No 343
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.80 E-value=0.59 Score=53.35 Aligned_cols=207 Identities=13% Similarity=0.139 Sum_probs=119.0
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEe-----ecCCCcceeeee
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVY-----ASDNFSSLKCRS 77 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~-----~~~d~~~l~~~~ 77 (389)
.|..+.|. ..-|.....+|.|-+-|.++...- +-|.-++.|.+..||||+++++.+... -+.+|.-+--+.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 45666666 444566667888888888765433 334445789999999999998886421 111110000000
Q ss_pred eeEeEeccCCCC---------------CcceeEe---e-------ecccCceeEEEecCCCeEEEEec----CC-CeEEE
Q 016446 78 TKIEYIRRGKPD---------------SGFALFE---S-------ESLKWPGFVEFDDVNGKVLTYSA----QD-SIYKV 127 (389)
Q Consensus 78 ~~l~~i~~g~~~---------------~~~~l~~---~-------~~~~~~~~v~Fs~pdG~~Las~s----~D-~tikl 127 (389)
..--+.+.++.. ..++.+. + +.-.|-.+|.+- -||++.|... .+ ++||+
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcEEEEEEEeccCCceeEEE
Confidence 000000111110 0000110 0 011122348886 7999988732 45 89999
Q ss_pred EeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEe----ecCCceeEEEEEecCCCe
Q 016446 128 FDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY----HLLHRNKKVDFIEQFNEK 200 (389)
Q Consensus 128 Wdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~----~~~~~~~~v~f~~~~~~~ 200 (389)
||-+ |.+-.+-. ...=.++++-| |..+|+-.....|.+|.++. ++|-....|. -....+..++|+ .+.+.
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wn-s~sdi 303 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWN-SNSDI 303 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeec-CCCCc
Confidence 9975 66543332 12234566666 88998888888888999998 5676555432 122337889998 44566
Q ss_pred EEE---EeCCCcEEEEECCC
Q 016446 201 LLV---KQENENLQILDVRN 217 (389)
Q Consensus 201 l~~---~s~D~tIklWd~~t 217 (389)
|+. ..+...|++|-..+
T Consensus 304 LAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eeeeecccccceEEEEEecC
Confidence 665 23666699998754
No 344
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.80 E-value=0.57 Score=45.60 Aligned_cols=194 Identities=12% Similarity=0.101 Sum_probs=121.3
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCC
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 113 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG 113 (389)
+.+++.+.......-.+.|-.+|..+-|+. -+.- -.++..++.+|+......| ....|+ ..++.- ++
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG---~yG~-----S~l~~~d~~tg~~~~~~~l-~~~~Fg--EGit~~--~d 100 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTG---LYGQ-----SSLRKVDLETGKVLQSVPL-PPRYFG--EGITIL--GD 100 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEEC---STTE-----EEEEEEETTTSSEEEEEE--TTT--E--EEEEEE--TT
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCC---CCCc-----EEEEEEECCCCcEEEEEEC-Cccccc--eeEEEE--CC
Confidence 556677766666788899989999888863 3331 3455677788887322221 011222 346664 34
Q ss_pred eEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec--CC---c
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL--LH---R 187 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~--~~---~ 187 (389)
++..--=..++.-+||.++-+++.+++ ...=|.++ ++|+.|..+..+ ..+..+|.++-+..++++-. .. .
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt-~dg~~Li~SDGS---~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT-SDGKRLIMSDGS---SRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE-ECSSCEEEE-SS---SEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecCCcceEEE-cCCCEEEEECCc---cceEEECCcccceEEEEEEEECCEECCC
Confidence 444333468899999999999998887 44566777 677777665322 58999999998888877622 22 3
Q ss_pred eeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEcc------------cC---CCceEEEEEcC-CCcEEEEEc
Q 016446 188 NKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSR------------TE---FMTPSAFIFLY-ENQLFLTFR 247 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~------------gh---~~~v~sv~fsp-dg~~laS~s 247 (389)
.+++.+. ++.|.+-- ....|-.-|.++|+++..+. .+ .+-.+-||+.| .+++++||.
T Consensus 177 LNELE~i---~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 177 LNELEYI---NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEEE---TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cEeEEEE---cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 4777776 67777764 56667777999999987641 11 45689999966 556777874
No 345
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.77 E-value=0.69 Score=46.18 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=56.3
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE---EEEec------CCcEEEEEEcCC----ceEEEEecC------
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS------DKHVQEIKISPG----IMLLIFNRS------ 161 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~---l~tl~------~~~V~~vafS~g----~~la~~~~~------ 161 (389)
..|.+++|. |||+++++- ..|.|++.+ .+|.. +..+. ......++|+|+ .+|......
T Consensus 2 ~~P~~~a~~-pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 2 NNPRSMAFL-PDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SSEEEEEEE-TTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCceEEEEe-CCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 357899998 899999864 599999999 56664 33442 246899999972 444443321
Q ss_pred CCCeeEEEEEcCCC-------eEE-EEEee---cCCceeEEEEEecCCCeEEE
Q 016446 162 SSHVPLKILSIEDG-------TVL-KVFYH---LLHRNKKVDFIEQFNEKLLV 203 (389)
Q Consensus 162 s~d~tiklWd~~tG-------~~l-~tl~~---~~~~~~~v~f~~~~~~~l~~ 203 (389)
..+..|.-|....+ +.+ ..+.. ..|.-..++|. |++...++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fg-pDG~LYvs 130 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFG-PDGKLYVS 130 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE--TTSEEEEE
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCC-CCCcEEEE
Confidence 11123444554443 112 22232 34556889998 66644444
No 346
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.67 E-value=0.23 Score=53.64 Aligned_cols=189 Identities=11% Similarity=0.118 Sum_probs=102.4
Q ss_pred ceEEEEEEeeCCCEEEEEEEee--cCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC
Q 016446 45 EVIRSLFYNKNNDSLITVSVYA--SDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 122 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~--~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D 122 (389)
..+.+.++||||+.+|.+.... ..| ..-.||-...|.. ...+.. .. ....-.|| |||+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d------~~s~Lwv~~~gg~--~~~lt~-g~--~~t~PsWs-pDG~~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPD------PASSLWVGPLGGV--AVQVLE-GH--SLTRPSWS-LDADAVWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCC------cceEEEEEeCCCc--ceeeec-CC--CCCCceEC-CCCCceEEEecC
Confidence 4678999999999998865311 112 2233444333332 122321 11 12346887 898888777532
Q ss_pred -CeEEEE-----------eCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEE---EEcCCCe-EE---EEEe
Q 016446 123 -SIYKVF-----------DLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKI---LSIEDGT-VL---KVFY 182 (389)
Q Consensus 123 -~tiklW-----------dl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tikl---Wd~~tG~-~l---~tl~ 182 (389)
..+++. ++..++....+ ...|.++++| ||.++|.... +.|.+ =....|+ .+ +.+.
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~~~~~-~g~Issl~wSpDG~RiA~i~~----g~v~Va~Vvr~~~G~~~l~~~~~l~ 492 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAVASRV-PGPISELQLSRDGVRAAMIIG----GKVYLAVVEQTEDGQYALTNPREVG 492 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchhhhcc-CCCcCeEEECCCCCEEEEEEC----CEEEEEEEEeCCCCceeecccEEee
Confidence 223333 34333322211 3569999999 7998887642 34554 4445665 11 1122
Q ss_pred -ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEEccc--CCCceEEEEEcCCCcEEEEEcCCeEEE
Q 016446 183 -HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRT--EFMTPSAFIFLYENQLFLTFRNRTVAV 253 (389)
Q Consensus 183 -~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~-tg~~~~~l~g--h~~~v~sv~fspdg~~laS~sD~tIkl 253 (389)
........++|. . ++.|+.+..+....+|-+. .|.....+.+ ....+.+|+=+| +.++++.+++.+++
T Consensus 493 ~~l~~~~~~l~W~-~-~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~-~~iyv~~~~g~~~l 564 (591)
T PRK13616 493 PGLGDTAVSLDWR-T-GDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP-STVYVTDARAVLQL 564 (591)
T ss_pred cccCCccccceEe-c-CCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC-ceEEEEcCCceEEe
Confidence 222335778886 3 4556665544444455443 3444333333 356778888777 45666656775543
No 347
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.64 E-value=0.013 Score=64.39 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=104.3
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcCCceEEEEecCCC------CeeEEEEEcCCCeEEEEEe
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSS------HVPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~g~~la~~~~~s~------d~tiklWd~~tG~~l~tl~ 182 (389)
.|++.|-+|.+.|+|-|=|+++.+.++++.. +.|.++.. .|..|++++-... |.=||+||++.=+.|..+.
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv-~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV-QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 5789999999999999999999999988863 45554433 4667766654432 4568999998766665555
Q ss_pred ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CeE---EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 183 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AEL---MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 183 ~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~~---~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
.+-++ .=+.|.|.-..+++..|.-|..++=|..+ +++ ++....-...+.++.+|+.|+.+|-+. +|.|.+|--
T Consensus 264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 44333 23455544457888889899999888322 222 333344555699999999999999998 999999974
No 348
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.58 E-value=0.00049 Score=72.86 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=107.6
Q ss_pred eecCCceeEEEEEecCCCeEEEEe----CCCcEEEEECCCC--eEEE---EcccCCCceEEEEEcCCCcEEEEEc-CCeE
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNA--ELME---VSRTEFMTPSAFIFLYENQLFLTFR-NRTV 251 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s----~D~tIklWd~~tg--~~~~---~l~gh~~~v~sv~fspdg~~laS~s-D~tI 251 (389)
++|......++|++-|...||+|= .|-.++|||+.++ .+.+ ...+--....++++..|-+++.+|. .+.+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 355566788899876667777763 6889999999988 2222 1122233455889999999999998 8899
Q ss_pred EEEeCCCcEEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcccccCCCCCeEEEEeC-CC-CeEEEEecCCCCC
Q 016446 252 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSI-LT-GKCLAKINATNCS 328 (389)
Q Consensus 252 klWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tIklWd~-~t-g~~l~tl~gH~~~ 328 (389)
++.|++..+.+..+-... +|..+.++| .+.|+++.+ |+-|-|||. .. .+.++.+...+
T Consensus 179 ~ifdlRqs~~~~~svnTk-----~vqG~tVdp~~~nY~cs~~------------dg~iAiwD~~rnienpl~~i~~~~-- 239 (783)
T KOG1008|consen 179 HIFDLRQSLDSVSSVNTK-----YVQGITVDPFSPNYFCSNS------------DGDIAIWDTYRNIENPLQIILRNE-- 239 (783)
T ss_pred hhhhhhhhhhhhhhhhhh-----hcccceecCCCCCceeccc------------cCceeeccchhhhccHHHHHhhCC--
Confidence 999997554433222222 257788899 999999865 589999993 11 23343433222
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC-EEEEecCC-CcEEEcc
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRH-GLVHVWS 388 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~-~LaSgs~D-~tIrlW~ 388 (389)
++|. +.+..++|.|-.. .|++-++| ++|++.+
T Consensus 240 ------------------N~~~----------~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 240 ------------------NKKP----------KQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ------------------CCcc----------cceeeEEeccCCcchhhhhccCcceEEEec
Confidence 1111 4689999999763 46666665 6888876
No 349
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.46 E-value=0.22 Score=42.32 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=31.4
Q ss_pred eEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEE
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIF 158 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~ 158 (389)
..|+-||.|..||+|+ ..+++..+. .+.|.++.-..+.++|.+
T Consensus 16 ~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~ 59 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYA 59 (111)
T ss_pred ceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEE
Confidence 4688899999999998 556777776 467777766654555554
No 350
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.44 E-value=0.88 Score=43.28 Aligned_cols=194 Identities=18% Similarity=0.244 Sum_probs=118.7
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE---------------Eec-CCcEEEEEEc----CCceEEEEecCC
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY---------------SIS-DKHVQEIKIS----PGIMLLIFNRSS 162 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~---------------tl~-~~~V~~vafS----~g~~la~~~~~s 162 (389)
+..++.- |+-+.|+.-+ |+++.+.++..-.... .+. ...|..++.. .+.+|+.+. .
T Consensus 38 I~ql~vl-~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-k- 113 (275)
T PF00780_consen 38 ITQLSVL-PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-K- 113 (275)
T ss_pred EEEEEEe-cccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-C-
Confidence 5666666 4444555443 5999999987655333 222 2456666621 345565553 2
Q ss_pred CCeeEEEEEcCCC-----eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC--------
Q 016446 163 SHVPLKILSIEDG-----TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-------- 229 (389)
Q Consensus 163 ~d~tiklWd~~tG-----~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~-------- 229 (389)
++|.++..... +.++.+.- ......++|. +..++.+.. ....+.|+.++.....+.....
T Consensus 114 --k~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~---~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~ 186 (275)
T PF00780_consen 114 --KKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL---GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRN 186 (275)
T ss_pred --CEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe---CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcc
Confidence 47888766542 56677663 3677888886 567777764 4488999998887766532221
Q ss_pred ---ceEEEEEcCCCcEEEEEcCCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCC
Q 016446 230 ---TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 230 ---~v~sv~fspdg~~laS~sD~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~ 306 (389)
....+.-.+++++|+.. |..--.=|.+|+..+ ++.-.|.. ...++++ ...||+.-+. +
T Consensus 187 ~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r--~~~i~W~~--~p~~~~~--~~pyli~~~~------------~ 247 (275)
T PF00780_consen 187 SSSKPLGIFQLSDNEFLLCY-DNIGVFVNKNGEPSR--KSTIQWSS--APQSVAY--SSPYLIAFSS------------N 247 (275)
T ss_pred cCCCceEEEEeCCceEEEEe-cceEEEEcCCCCcCc--ccEEEcCC--chhEEEE--ECCEEEEECC------------C
Confidence 12333334556777654 444446677787655 22222211 1356666 3457776543 6
Q ss_pred eEEEEeCCCCeEEEEecCCC
Q 016446 307 SINVSSILTGKCLAKINATN 326 (389)
Q Consensus 307 tIklWd~~tg~~l~tl~gH~ 326 (389)
.|.||++.+|++++++.++.
T Consensus 248 ~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 248 SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEEEEECcCCcEEEEEECCC
Confidence 79999999999999998765
No 351
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0083 Score=60.74 Aligned_cols=127 Identities=10% Similarity=0.049 Sum_probs=87.1
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~ 246 (389)
++..+..+=+.+.-+.+|+.-+++++|++...+.+..++.+.+|+|-|+++..++.....| ..+|+++|--|....+-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 3444444444455666777888999999444456777999999999999999999999988 799999998777777766
Q ss_pred c--CCeEEEEeCC-C-cEEEEeccCcCCcCCC---CeeEEEECCCCCEEEEEecC
Q 016446 247 R--NRTVAVWNFR-G-ELVTSFEDHLLWHPDC---NTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 247 s--D~tIklWd~~-G-~~l~tl~gh~~~~~~~---~v~sv~fSpdG~~laS~s~D 294 (389)
+ .|.|-++|++ - ..+..|.+.....|-+ .|..-..+|-|-+|+..+.+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~ 308 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV 308 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh
Confidence 5 8999999985 2 2344444422211100 01222456677777776653
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.39 E-value=1.1 Score=43.98 Aligned_cols=171 Identities=15% Similarity=0.165 Sum_probs=95.1
Q ss_pred eEEEEeCCCCeEEEEe--c-CCcEEE---EEEcC-----CceEEEEecCC-------CCeeEEEEEcCCC----eEEEEE
Q 016446 124 IYKVFDLKNYTMLYSI--S-DKHVQE---IKISP-----GIMLLIFNRSS-------SHVPLKILSIEDG----TVLKVF 181 (389)
Q Consensus 124 tiklWdl~~g~~l~tl--~-~~~V~~---vafS~-----g~~la~~~~~s-------~d~tiklWd~~tG----~~l~tl 181 (389)
.|||-|..+.+.+.++ . .+.|.+ +.|.. -.+++++..-. ..+.|.+.++... ..++.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5677777666665443 2 233443 33332 24555553311 1278999999884 233322
Q ss_pred e--ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe-EEEEccc-CCCceEEEEEcCCCcEEEEEc-CCeEEEE--
Q 016446 182 Y--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVW-- 254 (389)
Q Consensus 182 ~--~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~-~~~~l~g-h~~~v~sv~fspdg~~laS~s-D~tIklW-- 254 (389)
. ...+.+.+++-. +++++++ .+++|.+|++...+ ++..-.- ....+.++... +.+++.|. -+.|-+.
T Consensus 83 ~~~~~~g~V~ai~~~---~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF---NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE---TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh---CCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 234666776643 6775554 46999999999888 5443211 22245554433 55777776 6666666
Q ss_pred eCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 255 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 255 d~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+-++..+..+.....+. .+.++.|-+|++.++.+.. +|.|.++...
T Consensus 157 ~~~~~~l~~va~d~~~~---~v~~~~~l~d~~~~i~~D~-----------~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEENNKLILVARDYQPR---WVTAAEFLVDEDTIIVGDK-----------DGNLFVLRYN 202 (321)
T ss_dssp ETTTE-EEEEEEESS-B---EEEEEEEE-SSSEEEEEET-----------TSEEEEEEE-
T ss_pred EccCCEEEEEEecCCCc---cEEEEEEecCCcEEEEEcC-----------CCeEEEEEEC
Confidence 44465444444322221 2788999888877776654 4888888754
No 353
>PRK10115 protease 2; Provisional
Probab=96.38 E-value=2.1 Score=47.12 Aligned_cols=181 Identities=7% Similarity=0.036 Sum_probs=97.5
Q ss_pred eeEEEecCCCeEEEEecC-----CCeEEEEeCCCCeEEE-EecCCcEEEEEEc-CCceEEEEecCC---CCeeEEEEEcC
Q 016446 104 GFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLY-SISDKHVQEIKIS-PGIMLLIFNRSS---SHVPLKILSIE 173 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~-----D~tiklWdl~~g~~l~-tl~~~~V~~vafS-~g~~la~~~~~s---~d~tiklWd~~ 173 (389)
..+.+| |||++||.+-. .-+|++=|+.+|+.+- .+.+.. ..++|+ +++.|+.+..+. ....|.++++.
T Consensus 130 ~~~~~S-pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 130 GGMAIT-PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred eEEEEC-CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 357887 89999987643 3468888998887432 222222 468999 777776664432 22578889999
Q ss_pred CC--eEEEEEeecCCceeEEEE-EecCCCeEEEEe---CCCcEEEEEC--CCCeEEEEcccCCCceEEEEEcCCCcEEEE
Q 016446 174 DG--TVLKVFYHLLHRNKKVDF-IEQFNEKLLVKQ---ENENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 174 tG--~~l~tl~~~~~~~~~v~f-~~~~~~~l~~~s---~D~tIklWd~--~tg~~~~~l~gh~~~v~sv~fspdg~~laS 245 (389)
|+ +-...++...+... +.. ...++..++..+ .+..+.+++. .+++....+..-......+. ..++.+.+.
T Consensus 208 t~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~ 285 (686)
T PRK10115 208 TPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLR 285 (686)
T ss_pred CChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEE
Confidence 98 33333432222233 332 223667666643 5678999994 34553222222222333332 444555555
Q ss_pred Ec-C-CeEEEEeCC-C--cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 246 FR-N-RTVAVWNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 246 ~s-D-~tIklWd~~-G--~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
.. + ..-+|..+. . ...+++-.|... ..|.++.++. ..++++..
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~---~~i~~~~~~~-~~l~~~~~ 333 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPREN---IMLEGFTLFT-DWLVVEER 333 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCC---CEEEEEEEEC-CEEEEEEE
Confidence 53 2 355555442 1 122344444221 1267788772 24444443
No 354
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.38 E-value=1.1 Score=43.70 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=101.8
Q ss_pred CeEEEEecC---CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce--eEEEEEecCCCeEEE-Ee
Q 016446 133 YTMLYSISD---KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLV-KQ 205 (389)
Q Consensus 133 g~~l~tl~~---~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~--~~v~f~~~~~~~l~~-~s 205 (389)
.+.+.++++ .....+.|- +|..+-++..- ....|+.+|+.||+.++...-. ... ..++.. +++|.- .=
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~y-G~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~~---~d~l~qLTW 107 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLY-GQSSLRKVDLETGKVLQSVPLP-PRYFGEGITIL---GDKLYQLTW 107 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECST-TEEEEEEEETTTSSEEEEEE-T-TT--EEEEEEE---TTEEEEEES
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCC-CcEEEEEEECCCCcEEEEEECC-ccccceeEEEE---CCEEEEEEe
Confidence 445666653 467889995 67666555433 3579999999999998776521 222 233332 333333 45
Q ss_pred CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 206 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 206 ~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
.+++.-+||..+-+.+.++.- ...=|.++ +.+.+++.|-+..++..+|.. -+.+++++-.....+-..++.+.+- |
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y-~~EGWGLt-~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~ 184 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPY-PGEGWGLT-SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N 184 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE--SSS--EEE-ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred cCCeEEEEccccceEEEEEec-CCcceEEE-cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence 889999999999998887643 23556676 334444444447788888874 5555555432221111236777764 7
Q ss_pred CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 285 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 285 G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
|.+.|=--.. ..|-.-|..||+++..+.-
T Consensus 185 G~IyANVW~t-----------d~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 185 GKIYANVWQT-----------DRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp TEEEEEETTS-----------SEEEEEETTT-BEEEEEE-
T ss_pred CEEEEEeCCC-----------CeEEEEeCCCCeEEEEEEh
Confidence 8877754332 4666779999999888743
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.34 E-value=0.6 Score=45.95 Aligned_cols=172 Identities=10% Similarity=0.070 Sum_probs=102.3
Q ss_pred eEEEEEcCCCeEEEEEeecC-CceeEEEEEecC------CCeEEEEe-----C-----CCcEEEEECCCC----eEEEEc
Q 016446 166 PLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQF------NEKLLVKQ-----E-----NENLQILDVRNA----ELMEVS 224 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~-~~~~~v~f~~~~------~~~l~~~s-----~-----D~tIklWd~~tg----~~~~~l 224 (389)
.|||-|..+.+.+.+++... ..+.++...... ..+++.|. + .|.|.++++... ..++.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57888887888777766322 233444443222 24566653 1 188999999884 122222
Q ss_pred --ccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-Cc-EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 016446 225 --RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300 (389)
Q Consensus 225 --~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~-~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~ 300 (389)
....++|.+++-- +|+ |+.+..++|.+|++. .+ ++. ..-+..+. .+.++. .-+.+|+.|..-
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~-~~~~~~~~---~i~sl~--~~~~~I~vgD~~------ 148 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLK-KAFYDSPF---YITSLS--VFKNYILVGDAM------ 148 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEE-EEEE-BSS---SEEEEE--EETTEEEEEESS------
T ss_pred EEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchh-hheecceE---EEEEEe--ccccEEEEEEcc------
Confidence 3456788888665 555 666668999999996 55 443 22222221 244544 446688887543
Q ss_pred cCCCCCeEEEEeCC-CCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 301 MEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 301 ~~s~D~tIklWd~~-tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
+.|-+.... .++.+..+..... ..+|+++.|-+|++.++.+.
T Consensus 149 -----~sv~~~~~~~~~~~l~~va~d~~--------------------------------~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 149 -----KSVSLLRYDEENNKLILVARDYQ--------------------------------PRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp -----SSEEEEEEETTTE-EEEEEEESS---------------------------------BEEEEEEEE-SSSEEEEEE
T ss_pred -----cCEEEEEEEccCCEEEEEEecCC--------------------------------CccEEEEEEecCCcEEEEEc
Confidence 566666332 3443444332110 04799999998888999999
Q ss_pred CCCcEEEcc
Q 016446 380 RHGLVHVWS 388 (389)
Q Consensus 380 ~D~tIrlW~ 388 (389)
.+|.+.+..
T Consensus 192 ~~gnl~~l~ 200 (321)
T PF03178_consen 192 KDGNLFVLR 200 (321)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999988754
No 356
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.34 E-value=0.3 Score=52.80 Aligned_cols=139 Identities=9% Similarity=0.018 Sum_probs=79.0
Q ss_pred CcEEEEEEc-CCceEEEEec---CCCCeeEEEEEcC-CCeEEEEEeecCCceeEEEEEecCCCeEEEEe----------C
Q 016446 142 KHVQEIKIS-PGIMLLIFNR---SSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----------E 206 (389)
Q Consensus 142 ~~V~~vafS-~g~~la~~~~---~s~d~tiklWd~~-tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s----------~ 206 (389)
..+.+.++| +|+++|.... ...|..-+||=.. .|+. +.+.. ......-.|+ |+++.+...+ .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~~~t~PsWs-pDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GHSLTRPSWS-LDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CCCCCCceEC-CCCCceEEEecCcceEEEecc
Confidence 367889999 6888876642 1123334455332 3333 44431 1235556665 5656555432 2
Q ss_pred --CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEE---EeCC-CcE-E---EEeccCcCCcCCCCe
Q 016446 207 --NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAV---WNFR-GEL-V---TSFEDHLLWHPDCNT 276 (389)
Q Consensus 207 --D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIkl---Wd~~-G~~-l---~tl~gh~~~~~~~~v 276 (389)
.+.+.+.++..|+..+ .....|.++.|||||+.+|--.++.|.+ =..+ |+. + +.|..-... .+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~----~~ 499 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGD----TA 499 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCC----cc
Confidence 2334444777776654 2345699999999999999777777666 2333 651 1 112211111 14
Q ss_pred eEEEECCCCCEEEE
Q 016446 277 NNIYITSDQDLIIS 290 (389)
Q Consensus 277 ~sv~fSpdG~~laS 290 (389)
.+++|.+|+++++.
T Consensus 500 ~~l~W~~~~~L~V~ 513 (591)
T PRK13616 500 VSLDWRTGDSLVVG 513 (591)
T ss_pred ccceEecCCEEEEE
Confidence 78999999996654
No 357
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0095 Score=60.34 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=63.6
Q ss_pred eccCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 264 FEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
|.+|... |++++|||... +|..+|.+ ++|||-|+++-.++.+...|.
T Consensus 189 lp~~g~~-----IrdlafSp~~~GLl~~asl~-----------nkiki~dlet~~~vssy~a~~---------------- 236 (463)
T KOG1645|consen 189 LPGEGSF-----IRDLAFSPFNEGLLGLASLG-----------NKIKIMDLETSCVVSSYIAYN---------------- 236 (463)
T ss_pred ccccchh-----hhhhccCccccceeeeeccC-----------ceEEEEecccceeeeheeccC----------------
Confidence 4455554 79999999998 67777654 899999999999999998885
Q ss_pred ccccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEccC
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~~ 389 (389)
.+||++|.-|. +.|+.|-..|.|-++|.
T Consensus 237 -------------------~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 237 -------------------QIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred -------------------CceeeeeccCCcceeEEeccCceEEEEEc
Confidence 89999999876 78999999999999874
No 358
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.21 E-value=0.29 Score=51.15 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=76.8
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEE-eCCCcEEEEecc
Q 016446 188 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW-NFRGELVTSFED 266 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklW-d~~G~~l~tl~g 266 (389)
...+.++ |.+..++. +.|+.--|+.....+-... +.-..++|.+.+++.+--+.++|+|. +++.+..+.++-
T Consensus 35 p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 35 PQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp -SEEEE--TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred CeeEEEC-CCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC
Confidence 4667776 54544444 8888888888544443332 22345789997775444448999995 555443333332
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccc
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
.. .+..+.. |..|+..+. +.|.++|+++++.++.+.-
T Consensus 108 ~~------~~~~If~---G~LL~~~~~------------~~i~~yDw~~~~~i~~i~v---------------------- 144 (443)
T PF04053_consen 108 PF------SVEKIFG---GNLLGVKSS------------DFICFYDWETGKLIRRIDV---------------------- 144 (443)
T ss_dssp SS-------EEEEE----SSSEEEEET------------TEEEEE-TTT--EEEEESS----------------------
T ss_pred Cc------ccceEEc---CcEEEEECC------------CCEEEEEhhHcceeeEEec----------------------
Confidence 11 1455554 999988753 5899999999999999963
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
.+|..|.+||+|+.+|=.+.|..
T Consensus 145 --------------~~vk~V~Ws~~g~~val~t~~~i 167 (443)
T PF04053_consen 145 --------------SAVKYVIWSDDGELVALVTKDSI 167 (443)
T ss_dssp ---------------E-EEEEE-TTSSEEEEE-S-SE
T ss_pred --------------CCCcEEEEECCCCEEEEEeCCeE
Confidence 25889999999999999987743
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.19 E-value=1.2 Score=42.33 Aligned_cols=230 Identities=14% Similarity=0.136 Sum_probs=126.6
Q ss_pred eeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCC
Q 016446 11 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 90 (389)
Q Consensus 11 ~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~ 90 (389)
..++.|+.|.++| +-+++.........+..- ..|..+..-|+-+.|+.-+ | +.+.+.++..=....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvLs-----d------~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVLS-----D------GQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEEc-----C------CccEEEEchhhcccc
Confidence 3489999999999 778888333333333332 3499999999877776632 2 344444442211110
Q ss_pred cc-e-eE--------eeecccCceeEEEe---cCCC-eEEEEecCCCeEEEEeCCCC-----eEEEEec-CCcEEEEEEc
Q 016446 91 GF-A-LF--------ESESLKWPGFVEFD---DVNG-KVLTYSAQDSIYKVFDLKNY-----TMLYSIS-DKHVQEIKIS 150 (389)
Q Consensus 91 ~~-~-l~--------~~~~~~~~~~v~Fs---~pdG-~~Las~s~D~tiklWdl~~g-----~~l~tl~-~~~V~~vafS 150 (389)
.. . .+ .......+ -.|. .+.+ .+|+ ....++|.++..... +.+..+. .+.+.+++|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~v--~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~ 147 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKGV--SFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL 147 (275)
T ss_pred ccccccccccccccccccccCCe--eEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe
Confidence 00 0 00 00111111 1222 1333 4444 455679999987653 3455555 5789999999
Q ss_pred CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC---------ceeEEEEEe-cCCCeEEEEeCCCcEEEEECCCCeE
Q 016446 151 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH---------RNKKVDFIE-QFNEKLLVKQENENLQILDVRNAEL 220 (389)
Q Consensus 151 ~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~---------~~~~v~f~~-~~~~~l~~~s~D~tIklWd~~tg~~ 220 (389)
++..+ .+.. ....+-|+.+|+....+..... ....+.... ++++.|+. .|..--.-|. .|+.
T Consensus 148 ~~~i~-v~~~----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~--~~~~g~fv~~-~G~~ 219 (275)
T PF00780_consen 148 GNKIC-VGTS----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC--YDNIGVFVNK-NGEP 219 (275)
T ss_pred CCEEE-EEeC----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEE--ecceEEEEcC-CCCc
Confidence 54444 4432 3578889988876554431111 111222211 23444543 2333334444 4443
Q ss_pred EE--EcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCc
Q 016446 221 ME--VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHL 268 (389)
Q Consensus 221 ~~--~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~ 268 (389)
.+ ++.= ...+.++++ ...+|+...++.|.||++. |++++++.++.
T Consensus 220 ~r~~~i~W-~~~p~~~~~--~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 220 SRKSTIQW-SSAPQSVAY--SSPYLIAFSSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred CcccEEEc-CCchhEEEE--ECCEEEEECCCEEEEEECcCCcEEEEEECCC
Confidence 32 2222 225566666 4458888887889999996 99999998653
No 360
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=0.0094 Score=56.42 Aligned_cols=133 Identities=15% Similarity=0.109 Sum_probs=84.3
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC-------CCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcC
Q 016446 200 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-------ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLL 269 (389)
Q Consensus 200 ~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-------dg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~ 269 (389)
.+.+.+.|++++=.+++..+ ..+.+.-|-. -+..++.|. ||.|.+|+.+ |........-..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k---------~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e 102 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHK---------ESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE 102 (238)
T ss_pred hhccccCCcccccchhhhhh---------hhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccc
Confidence 35567788888877775322 2222222322 234456665 9999999875 543221111111
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
. ++..|..-.++.+.-+++. |+-||.|+++-++.+.....|+.
T Consensus 103 ~----i~~~Ip~~~~~~~~c~~~~-----------dg~ir~~n~~p~k~~g~~g~h~~---------------------- 145 (238)
T KOG2444|consen 103 S----IDLGIPNGRDSSLGCVGAQ-----------DGRIRACNIKPNKVLGYVGQHNF---------------------- 145 (238)
T ss_pred c----ceeccccccccceeEEecc-----------CCceeeeccccCceeeeeccccC----------------------
Confidence 1 1234444445555555544 69999999999999888888873
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEe--cCCCcEEEccC
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTG--NRHGLVHVWSN 389 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSg--s~D~tIrlW~~ 389 (389)
.++..+..+--++.|+++ |.|.++|.|+.
T Consensus 146 -----------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 146 -----------ESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred -----------CCcceeEEecCCceEEeeccccchhhhhcch
Confidence 355666667778888888 89999999974
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.028 Score=59.84 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=64.5
Q ss_pred ceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 230 TPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 230 ~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
-+.-+.|+|--.++|.+. +|.|-+..++-+.+.++.-|.-.+ ..++++-|||+.||.|-.| |+|
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v----~~sL~W~~DGkllaVg~kd-----------G~I 86 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENV----TASLCWRPDGKLLAVGFKD-----------GTI 86 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCcc----ceeeeecCCCCEEEEEecC-----------CeE
Confidence 456678999999999998 998888888877788887554442 2499999999999999875 999
Q ss_pred EEEeCCCCeEEEE
Q 016446 309 NVSSILTGKCLAK 321 (389)
Q Consensus 309 klWd~~tg~~l~t 321 (389)
+|=|+++|..+..
T Consensus 87 ~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 87 RLHDVEKGGRLVS 99 (665)
T ss_pred EEEEccCCCceec
Confidence 9999999988866
No 362
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=1 Score=49.80 Aligned_cols=199 Identities=9% Similarity=0.042 Sum_probs=122.4
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEecC--Cc-EEEEEEcCC-ceEEEEecCCCCe--eEEEEEcCC----
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD--KH-VQEIKISPG-IMLLIFNRSSSHV--PLKILSIED---- 174 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~~--~~-V~~vafS~g-~~la~~~~~s~d~--tiklWd~~t---- 174 (389)
-.|+ +.+..+|-|+.||.|-+-+ .+. .++.++. .. |..+-.-++ ..|++-..+..-+ .+|+|+++.
T Consensus 29 sc~~-s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 29 SCCS-SSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred eEEc-CCCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 3566 7888999999888764444 444 4455552 23 333333333 3555444333212 699999873
Q ss_pred --CeEEEEEe--ec-----CCceeEEEEEecCCCeEEEEeCCCcEEEE--ECC--CCeEEEEcccCCCceEEEEEcCCCc
Q 016446 175 --GTVLKVFY--HL-----LHRNKKVDFIEQFNEKLLVKQENENLQIL--DVR--NAELMEVSRTEFMTPSAFIFLYENQ 241 (389)
Q Consensus 175 --G~~l~tl~--~~-----~~~~~~v~f~~~~~~~l~~~s~D~tIklW--d~~--tg~~~~~l~gh~~~v~sv~fspdg~ 241 (389)
-+|+.+.. .| ..+...++.+ .+-..++.|=.||.|-++ |+. -|...........+|+.++|..|++
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 34663222 21 1233455555 445677777799999888 322 1333333334556999999999999
Q ss_pred EEEEEc-CCeEEEEeCCCcE--EEEeccCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 242 LFLTFR-NRTVAVWNFRGEL--VTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 242 ~laS~s-D~tIklWd~~G~~--l~tl~gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
.++=.. -..|+++.++|+- ++++..|... +++..|++--. +++.++ .-+.++|...-+
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~-----lnCss~~~~t~qfIca~~-------------e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRTPSLKVLDNNGIS-----LNCSSFSDGTYQFICAGS-------------EFLYFYDSDGRG 246 (933)
T ss_pred eeEEEEecceeEEEEecCCCcceeeeccCCcc-----ceeeecCCCCccEEEecC-------------ceEEEEcCCCcc
Confidence 843334 7789999998664 7778777655 78889988554 555543 578888866444
Q ss_pred EEEEec-CCC
Q 016446 318 CLAKIN-ATN 326 (389)
Q Consensus 318 ~l~tl~-gH~ 326 (389)
.-.++. ||.
T Consensus 247 ~cfaf~~g~k 256 (933)
T KOG2114|consen 247 PCFAFEVGEK 256 (933)
T ss_pred eeeeecCCCe
Confidence 444555 665
No 363
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.07 E-value=0.047 Score=59.41 Aligned_cols=118 Identities=12% Similarity=0.175 Sum_probs=92.8
Q ss_pred CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecC---------CCeEEE--EeCCCcE
Q 016446 142 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF---------NEKLLV--KQENENL 210 (389)
Q Consensus 142 ~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~---------~~~l~~--~s~D~tI 210 (389)
+.-.++.++|++.+|.++.. -|-+=|..+-|.+++++.|...|..|.|.+-. ...++. +-..|.|
T Consensus 16 sN~~A~Dw~~~GLiAygshs----lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 16 SNRNAADWSPSGLIAYGSHS----LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred ccccccccCccceEEEecCc----eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 45678889999999988544 68899999999999999999999999997321 112333 3467999
Q ss_pred EEEECCCCeEEEEcccCCCceEEEEEcC---CCc-EEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 211 QILDVRNAELMEVSRTEFMTPSAFIFLY---ENQ-LFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 211 klWd~~tg~~~~~l~gh~~~v~sv~fsp---dg~-~laS~s-D~tIklWd~~-G~~l~t 263 (389)
-|||+..+..+..+..|.+++..+.|-| +.+ +|+.-. -.+|-|||.. |+.+-.
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk 150 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK 150 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec
Confidence 9999999999999999999999998864 563 444444 8899999986 887643
No 364
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.07 E-value=0.0025 Score=69.83 Aligned_cols=104 Identities=12% Similarity=0.136 Sum_probs=70.1
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEE-----------cCCCcEEEEEc-CCeEEEEeCC--Cc----EEE
Q 016446 201 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF-----------LYENQLFLTFR-NRTVAVWNFR--GE----LVT 262 (389)
Q Consensus 201 l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f-----------spdg~~laS~s-D~tIklWd~~--G~----~l~ 262 (389)
+-.+-.+++|+|-+..+.+. ..+++|..++..++| ||||+.||.+. ||.++.|.+. |+ |+.
T Consensus 198 ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclh 276 (1283)
T KOG1916|consen 198 ICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLH 276 (1283)
T ss_pred eeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhh
Confidence 33344789999988755443 667789988887776 99999999998 9999999873 64 677
Q ss_pred EeccCcCCcCCCCeeEEEECCC---------CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 263 SFEDHLLWHPDCNTNNIYITSD---------QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpd---------G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
..+.|...- .|..+ |..+ =+++++++.- ..-+|+|.-..=+|+
T Consensus 277 ewkphd~~p---~vC~l-c~~~~~~~v~i~~w~~~Itttd~----------nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 277 EWKPHDKHP---RVCWL-CHKQEILVVSIGKWVLRITTTDV----------NREEKFWAEAPWQCL 328 (1283)
T ss_pred ccCCCCCCC---ceeee-eccccccCCccceeEEEEecccC----------CcceeEeeccchhhh
Confidence 777777321 13333 3322 1234444332 256888886666665
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.99 E-value=0.0013 Score=69.63 Aligned_cols=193 Identities=17% Similarity=0.117 Sum_probs=121.9
Q ss_pred ccEEEEEecCceEEEEeccccee--eeeeecCCcceEEEEEEeeCC-CEEEEEEEeecCCCcceeeeeeeEeEeccCCCC
Q 016446 13 RDIVFALAHSGVCAAFSRETNRR--ICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 89 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~--l~tl~~~~~~~v~sv~~spdg-~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~ 89 (389)
+.++|++.-+|.|-|=....-.. --+.+++ +..-.++||++-. +.||.+-.-.-.| -.++|||+.++-.+
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~-ar~Ct~lAwneLDtn~LAagldkhrnd------s~~~Iwdi~s~ltv 142 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGY-ARPCTSLAWNELDTNHLAAGLDKHRND------SSLKIWDINSLLTV 142 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccc-cccccccccccccHHHHHhhhhhhccc------CCccceecccccCC
Confidence 46889999999998876532111 1234444 5788899999973 3344422111222 34567888777221
Q ss_pred -CcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC-CeEEEEecCCcEEEEEEcC--CceEEEEecCCCCe
Q 016446 90 -SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDKHVQEIKISP--GIMLLIFNRSSSHV 165 (389)
Q Consensus 90 -~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~-g~~l~tl~~~~V~~vafS~--g~~la~~~~~s~d~ 165 (389)
+...+|..+....+-++.+. .|.++|.+|...+.|++.|+.. ......+....|..+.+.| +.++++. .|+
T Consensus 143 Pke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~----~dg 217 (783)
T KOG1008|consen 143 PKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN----SDG 217 (783)
T ss_pred CccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc----ccC
Confidence 12234443344444568887 7899999999999999999852 2222333456788888886 7788643 367
Q ss_pred eEEEEEcC-C-CeEEEEEeecC----CceeEEEEEecCCCeEEEEe-CCCcEEEEECCC
Q 016446 166 PLKILSIE-D-GTVLKVFYHLL----HRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN 217 (389)
Q Consensus 166 tiklWd~~-t-G~~l~tl~~~~----~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~t 217 (389)
-|-+||.. . -..++++.... .....+++.|...+.+++-+ ..+||+++|+..
T Consensus 218 ~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 218 DIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 89999931 1 11222222111 23688999876678888866 569999999873
No 366
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.085 Score=57.57 Aligned_cols=138 Identities=8% Similarity=0.086 Sum_probs=89.8
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCC------ceEEEEecCCCCeeEEEEEcC-CCeEEE-EE
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPG------IMLLIFNRSSSHVPLKILSIE-DGTVLK-VF 181 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g------~~la~~~~~s~d~tiklWd~~-tG~~l~-tl 181 (389)
-+|.++||||.||+|.+-.+-+.+...++. +..+.+|+++|. .++++++.. + +-|..-. =|..-. .+
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~a---g-lvL~er~wlgnk~~v~l 156 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMA---G-LVLSERNWLGNKDSVVL 156 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcc---e-EEEehhhhhcCccceee
Confidence 579999999999999999999888776665 678999999974 455554222 2 3332100 001000 23
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEE------EEEcCCCcEEEEEcCCeEEEEe
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA------FIFLYENQLFLTFRNRTVAVWN 255 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~s------v~fspdg~~laS~sD~tIklWd 255 (389)
..--+.+.+|.+. +..||=++.+| ||++|..+++.+..++.-...++. +.|.++.+ |+=|.-.+|+|-.
T Consensus 157 ~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~ 231 (846)
T KOG2066|consen 157 SEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICS 231 (846)
T ss_pred ecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEE
Confidence 3334788888885 55555566655 799999998877665444345544 44555554 5557756787777
Q ss_pred CC
Q 016446 256 FR 257 (389)
Q Consensus 256 ~~ 257 (389)
++
T Consensus 232 I~ 233 (846)
T KOG2066|consen 232 IK 233 (846)
T ss_pred Ee
Confidence 64
No 367
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.88 E-value=0.8 Score=48.01 Aligned_cols=53 Identities=6% Similarity=0.145 Sum_probs=38.9
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe--EEEEec-------CCcEEEEEEcCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS-------DKHVQEIKISPG 152 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~l~tl~-------~~~V~~vafS~g 152 (389)
.+.+|+.++|. |||++|++--..|.|++++..++. .+..+. ......|||+|+
T Consensus 28 GL~~Pw~mafl-PDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 28 GLNKPWALLWG-PDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCCceEEEEc-CCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 46689999998 899999876556999999866554 232222 246889999975
No 368
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.58 E-value=0.86 Score=46.05 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=37.8
Q ss_pred CCceEEEEEcCCCcEEEEEcC--------------------CeEEEEeCCCcEEEEe-ccCcCCcCCCCeeEEEECCCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFRN--------------------RTVAVWNFRGELVTSF-EDHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~sD--------------------~tIklWd~~G~~l~tl-~gh~~~~~~~~v~sv~fSpdG~ 286 (389)
......++|.|||.+.++-++ +.|--+|.+|..+..+ .|+.. .+.++|+|+|+
T Consensus 123 ~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rn------p~Gl~~d~~G~ 196 (367)
T TIGR02604 123 HHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQN------PYGHSVDSWGD 196 (367)
T ss_pred cccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCC------CccceECCCCC
Confidence 345778999999998775542 2333344454333333 34433 37999999999
Q ss_pred EEEEEe
Q 016446 287 LIISYC 292 (389)
Q Consensus 287 ~laS~s 292 (389)
++++-.
T Consensus 197 l~~tdn 202 (367)
T TIGR02604 197 VFFCDN 202 (367)
T ss_pred EEEEcc
Confidence 988744
No 369
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.58 E-value=2.8 Score=41.74 Aligned_cols=212 Identities=10% Similarity=0.054 Sum_probs=123.8
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCC------CCe-EEEEecC-------CcEEEEEEcCCceEEEEe-----
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYT-MLYSISD-------KHVQEIKISPGIMLLIFN----- 159 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~------~g~-~l~tl~~-------~~V~~vafS~g~~la~~~----- 159 (389)
.+..++.++|+ |.|..-++...-++..|+|.+ ..+ ++-++.. .....++|+.++-+++..
T Consensus 21 ~L~N~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 21 GLRNAWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cccccceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 34456789998 899999999889999999986 222 3455541 256777777432221111
Q ss_pred -----cCCCCeeEEEEEcCCCeEE---E--EEe-ecCCce-eEEEEEec-CCCeEEEEe-CCCcEEEEECCCCeEEEEcc
Q 016446 160 -----RSSSHVPLKILSIEDGTVL---K--VFY-HLLHRN-KKVDFIEQ-FNEKLLVKQ-ENENLQILDVRNAELMEVSR 225 (389)
Q Consensus 160 -----~~s~d~tiklWd~~tG~~l---~--tl~-~~~~~~-~~v~f~~~-~~~~l~~~s-~D~tIklWd~~tg~~~~~l~ 225 (389)
..++|+||.=|...-+... . .+. ...+.+ +-+++..- -+.+|-++- ..++|.++|-.=... .+ .
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~-~~-~ 177 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP-PL-P 177 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc-cC-C
Confidence 1255688888885433331 1 111 111333 44444311 134555543 678888887532221 11 1
Q ss_pred cC-CCceEEEEEcC------CCcEEEEE-------------c-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECC-
Q 016446 226 TE-FMTPSAFIFLY------ENQLFLTF-------------R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS- 283 (389)
Q Consensus 226 gh-~~~v~sv~fsp------dg~~laS~-------------s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp- 283 (389)
+- .++---.-|.| .+++.++- . -|-|-++|.+|.+++.|. +..+-+ . =|.|+.-|
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~a-s~g~LN-a-PWG~a~APa 254 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVA-SSGRLN-A-PWGLAIAPE 254 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEec-cCCccc-C-CceeeeChh
Confidence 10 00000001111 34444443 2 468999999999999985 222211 1 27888866
Q ss_pred -----CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCC
Q 016446 284 -----DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 327 (389)
Q Consensus 284 -----dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~ 327 (389)
.|++|+---- ||+|..+|..+|+.+..|+.-.+
T Consensus 255 ~FG~~sg~lLVGNFG-----------DG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 255 SFGSLSGALLVGNFG-----------DGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred hhCCCCCCeEEeecC-----------CceeEEecCCCCceeeeecCCCC
Confidence 6888886533 69999999999999999987653
No 370
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.73 Score=50.60 Aligned_cols=181 Identities=9% Similarity=0.032 Sum_probs=120.6
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 184 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~ 184 (389)
+.+|+ ++.+|-|.++|.|.+.+. .|.+-..+..... -..|.++|++ +.|++|-+-.+-|++...++..+
T Consensus 44 ~~av~---~~~~~~GtH~g~v~~~~~-~~~~~~~~~~s~~----~~~Gey~asC---S~DGkv~I~sl~~~~~~~~~df~ 112 (846)
T KOG2066|consen 44 CCAVH---DKFFALGTHRGAVYLTTC-QGNPKTNFDHSSS----ILEGEYVASC---SDDGKVVIGSLFTDDEITQYDFK 112 (846)
T ss_pred HHHhh---cceeeeccccceEEEEec-CCccccccccccc----ccCCceEEEe---cCCCcEEEeeccCCccceeEecC
Confidence 46775 789999999999999996 5554222212112 1269999876 66789999999999988888754
Q ss_pred CCceeEEEEEecC-----CCeEEEEeCCCcEEEEECC-CCeEEE-EcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 016446 185 LHRNKKVDFIEQF-----NEKLLVKQENENLQILDVR-NAELME-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR 257 (389)
Q Consensus 185 ~~~~~~v~f~~~~-----~~~l~~~s~D~tIklWd~~-tg~~~~-~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~ 257 (389)
-++.+|++. |+ ..+.++|+.-| +-|..-. =|.... .+..-.+.|.+|.| .|.++|=++|--||++|..
T Consensus 113 -rpiksial~-Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~ 187 (846)
T KOG2066|consen 113 -RPIKSIALH-PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTP 187 (846)
T ss_pred -CcceeEEec-cchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCCcEEEecc
Confidence 788999998 43 35777788777 7666422 122222 34556678888866 5889998887779999996
Q ss_pred -CcEEEEecc-CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 258 -GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 258 -G~~l~tl~g-h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
++.+..++- |...-++-.-..+.|.++-+ |+-|=. .+|+|-.++
T Consensus 188 ~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~------------d~v~i~~I~ 233 (846)
T KOG2066|consen 188 TRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWG------------DSVKICSIK 233 (846)
T ss_pred ccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecC------------CeEEEEEEe
Confidence 666655542 22211111113466666555 555543 489999887
No 371
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.26 E-value=0.9 Score=45.90 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=48.6
Q ss_pred cEEEEECCC--CeE--EEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCCC------c---EEEEeccCc--CCcCC
Q 016446 209 NLQILDVRN--AEL--MEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG------E---LVTSFEDHL--LWHPD 273 (389)
Q Consensus 209 tIklWd~~t--g~~--~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~G------~---~l~tl~gh~--~~~~~ 273 (389)
.|.+++-.. |.. .+++...-..+..++|.++| ++++..+...++.|.+| + ++..|.... ..+
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~-- 124 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHH-- 124 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc--
Confidence 666665443 332 34444445567899999999 77765566666667643 2 223343310 001
Q ss_pred CCeeEEEECCCCCEEEEEe
Q 016446 274 CNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s 292 (389)
..+.++|.|||++.++-+
T Consensus 125 -~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 125 -SLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -cccCceECCCCCEEEecc
Confidence 147899999999988754
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.23 E-value=0.41 Score=53.26 Aligned_cols=126 Identities=14% Similarity=0.150 Sum_probs=85.2
Q ss_pred eCCCcEEEEECCCCeEEEEcccCCCc-eEEEEEcC--------CCcEEEEEcCCeEEEEeCC--CcEEEEeccCcCCcCC
Q 016446 205 QENENLQILDVRNAELMEVSRTEFMT-PSAFIFLY--------ENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPD 273 (389)
Q Consensus 205 s~D~tIklWd~~tg~~~~~l~gh~~~-v~sv~fsp--------dg~~laS~sD~tIklWd~~--G~~l~tl~gh~~~~~~ 273 (389)
.....+.--|+++|+.++...-|.+. |.. |-| ..+.++.-+++.+-.||.+ |..+..-+.|+-. ..
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~-~~ 577 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS-SK 577 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc-cC
Confidence 46688888999999999999888765 444 444 2355665678888899985 5433222334321 11
Q ss_pred CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE-ecCCCCCCCcccccCCCCCCCccccccccce
Q 016446 274 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYI 352 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
..-.++|=+.+|.+.+ ||. +|-|||+| ..|+--.| |.|-
T Consensus 578 ~~Fs~~aTt~~G~iav-gs~-----------~G~IRLyd-~~g~~AKT~lp~l--------------------------- 617 (794)
T PF08553_consen 578 NNFSCFATTEDGYIAV-GSN-----------KGDIRLYD-RLGKRAKTALPGL--------------------------- 617 (794)
T ss_pred CCceEEEecCCceEEE-EeC-----------CCcEEeec-ccchhhhhcCCCC---------------------------
Confidence 2357888888887555 554 59999999 55543222 2221
Q ss_pred ecccccccCCEEEEEECCCCCEEEEecC
Q 016446 353 RSTVGEALEDITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 353 ~~~~~~~~~~V~svafSpdg~~LaSgs~ 380 (389)
| .+|..|.-+.||++|+....
T Consensus 618 ----G---~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 618 ----G---DPIIGIDVTADGKWILATCK 638 (794)
T ss_pred ----C---CCeeEEEecCCCcEEEEeec
Confidence 1 69999999999999887663
No 373
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=2.1 Score=47.57 Aligned_cols=210 Identities=13% Similarity=0.084 Sum_probs=128.1
Q ss_pred cEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCC-CEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 5 KVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 5 ~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg-~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
.+..+--++..||.++-+|.|-+.+.. =+.++.++.+....|-.+ +.-++ ..|+++..+...+ -..+++|++
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~n-----p~llkiw~l 99 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGN-----PVLLKIWDL 99 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCC-----ceEEEEecc
Confidence 344444458999999999999888863 566688888864423333 33333 5888876554323 136777887
Q ss_pred ccCCCCC------cceeEeeecc--cCc-eeEEEecCCCeEEEEecCCCeEEEEeCC----CCeEE-EEec-CCcEEEEE
Q 016446 84 RRGKPDS------GFALFESESL--KWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTML-YSIS-DKHVQEIK 148 (389)
Q Consensus 84 ~~g~~~~------~~~l~~~~~~--~~~-~~v~Fs~pdG~~Las~s~D~tiklWdl~----~g~~l-~tl~-~~~V~~va 148 (389)
..-+.+. ..++|++... ..| .+++.| .+=+.+|.|=.||.|-+..=. -|... +... .+.|..++
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 4332221 1123431111 122 337887 678899999999999887411 12211 1222 36899999
Q ss_pred Ec-CCce--EEEEecCCCCeeEEEEEcCCCeE--EEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE
Q 016446 149 IS-PGIM--LLIFNRSSSHVPLKILSIEDGTV--LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 223 (389)
Q Consensus 149 fS-~g~~--la~~~~~s~d~tiklWd~~tG~~--l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~ 223 (389)
|- |++. +|++ . ..|+++.+. |+. ++++..|+...+...|+++.++. +...+.-+-++|.....+.-+
T Consensus 179 ~~~d~~s~lFv~T--t---~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qf--Ica~~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 179 LRSDGKSVLFVAT--T---EQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQF--ICAGSEFLYFYDSDGRGPCFA 250 (933)
T ss_pred EecCCceeEEEEe--c---ceeEEEEec-CCCcceeeeccCCccceeeecCCCCccE--EEecCceEEEEcCCCcceeee
Confidence 99 7776 4433 2 368999987 665 67788888888999997543433 333455677888764333333
Q ss_pred cc-cCCCc
Q 016446 224 SR-TEFMT 230 (389)
Q Consensus 224 l~-gh~~~ 230 (389)
+. ||...
T Consensus 251 f~~g~kk~ 258 (933)
T KOG2114|consen 251 FEVGEKKE 258 (933)
T ss_pred ecCCCeEE
Confidence 33 65543
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.18 E-value=1.3 Score=43.80 Aligned_cols=159 Identities=12% Similarity=0.180 Sum_probs=96.9
Q ss_pred EEEecCCCeE-EEEecCCCeEEEEeCCCCeEEEEe------c-----CCcEEEEEEc--CCceEEEEecCCCCeeEEEEE
Q 016446 106 VEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSI------S-----DKHVQEIKIS--PGIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 106 v~Fs~pdG~~-Las~s~D~tiklWdl~~g~~l~tl------~-----~~~V~~vafS--~g~~la~~~~~s~d~tiklWd 171 (389)
-+|..+||++ .|..+.+| +++... | ...=++|+|- ||+.. .++|
T Consensus 40 saf~~~dgs~g~a~~~eaG----------k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~------------~vfD 97 (366)
T COG3490 40 SAFDARDGSFGAATLSEAG----------KIVFATALPARGHGIAFHPALPRAVAFARRPGTFA------------MVFD 97 (366)
T ss_pred eeeeccCCceeEEEEccCC----------ceeeeeecccccCCeecCCCCcceEEEEecCCceE------------EEEC
Confidence 4677788886 45555444 444322 1 1233566666 66543 4677
Q ss_pred cCCCeEEEEEeecCCc-e-eEEEEEecCCCeEEEEeCC-----CcEEEEECCCCe-EEEEcccCCCceEEEEEcCCCcEE
Q 016446 172 IEDGTVLKVFYHLLHR-N-KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 172 ~~tG~~l~tl~~~~~~-~-~~v~f~~~~~~~l~~~s~D-----~tIklWd~~tg~-~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
..+++.+.++....++ . --=.|+ |||..|.++-.| |-|-|||...+- .+-.+.+|.-....+.+.+||++|
T Consensus 98 ~~~~~~pv~~~s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtl 176 (366)
T COG3490 98 PNGAQEPVTLVSQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTL 176 (366)
T ss_pred CCCCcCcEEEecccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEE
Confidence 7788877776421111 1 112355 778888776533 889999998543 244577888888899999999999
Q ss_pred EEEcCC-------------------eEEEEe-CCCcEEEEeccCcCC--cCCCCeeEEEECCCCCEEEE
Q 016446 244 LTFRNR-------------------TVAVWN-FRGELVTSFEDHLLW--HPDCNTNNIYITSDQDLIIS 290 (389)
Q Consensus 244 aS~sD~-------------------tIklWd-~~G~~l~tl~gh~~~--~~~~~v~sv~fSpdG~~laS 290 (389)
+-+.-| .+-|-| .+|+++ +.|..+ .....|.-+++-+||+.++-
T Consensus 177 vvanGGIethpdfgR~~lNldsMePSlvlld~atG~li---ekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 177 VVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI---EKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred EEeCCceecccccCccccchhhcCccEEEEeccccchh---hhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 876421 122334 346653 223322 11123788999999998774
No 375
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.17 E-value=0.57 Score=46.80 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=42.5
Q ss_pred ceEEEEEcCCCcEEEEEcCCeEEEEeCCCcE---EEEeccCcCCcCCCCeeEEEECCC----CCEEEEEec
Q 016446 230 TPSAFIFLYENQLFLTFRNRTVAVWNFRGEL---VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCK 293 (389)
Q Consensus 230 ~v~sv~fspdg~~laS~sD~tIklWd~~G~~---l~tl~gh~~~~~~~~v~sv~fSpd----G~~laS~s~ 293 (389)
.+++++|.|||++|++-..|.|++.+.+|.. +..+.. ...........++|+|+ +.+.++++.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~-v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPE-VFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TT-TBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceeccccc-ccccccCCcccceeccccCCCCEEEEEEEc
Confidence 5789999999999998789999999966665 333321 00001123689999995 777777763
No 376
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.07 E-value=5.8 Score=42.35 Aligned_cols=151 Identities=13% Similarity=0.090 Sum_probs=86.4
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC-C-----cEEE-EEEcCCceEEEEecC---CCCeeEEEEEcCCC
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K-----HVQE-IKISPGIMLLIFNRS---SSHVPLKILSIEDG 175 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~-~-----~V~~-vafS~g~~la~~~~~---s~d~tiklWd~~tG 175 (389)
+++. ++++ ..++.|+.+.--|.++|+.+..... + .+.+ -.+. +.++.++... ..++.|.-.|++||
T Consensus 116 ~av~--~~~v-~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 116 VALY--DGKV-FFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTG 191 (527)
T ss_pred ceEE--CCEE-EEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCC
Confidence 4554 4544 4467788888889999998865541 1 1111 1122 4455454322 13578999999999
Q ss_pred eEEEEEeecC-------------------------------Ccee-EEEEEecCCCeEEEEe-C----CC----------
Q 016446 176 TVLKVFYHLL-------------------------------HRNK-KVDFIEQFNEKLLVKQ-E----NE---------- 208 (389)
Q Consensus 176 ~~l~tl~~~~-------------------------------~~~~-~v~f~~~~~~~l~~~s-~----D~---------- 208 (389)
+.+-++..-. +.++ ..++- +.-+.+..+. . ++
T Consensus 192 ~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D-~~~~lvy~~tGnp~p~~~~~r~gdnl~~ 270 (527)
T TIGR03075 192 KLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYD-PETNLIYFGTGNPSPWNSHLRPGDNLYT 270 (527)
T ss_pred ceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEc-CCCCeEEEeCCCCCCCCCCCCCCCCccc
Confidence 9997754210 0111 11221 1123444432 2 22
Q ss_pred -cEEEEECCCCeEEEEcccCCCceEE---------EEEcCCCc---EEEEEc-CCeEEEEeCC-CcEE
Q 016446 209 -NLQILDVRNAELMEVSRTEFMTPSA---------FIFLYENQ---LFLTFR-NRTVAVWNFR-GELV 261 (389)
Q Consensus 209 -tIklWd~~tg~~~~~l~gh~~~v~s---------v~fspdg~---~laS~s-D~tIklWd~~-G~~l 261 (389)
.|---|++||+..-.++...+.++. +....||+ .++.+. +|.+-+-|.. |+++
T Consensus 271 ~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 271 SSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 5667799999986554432222222 22234776 777777 9999999996 9987
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.11 Score=58.36 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=63.2
Q ss_pred CeEEEEeCCCcEEEEECCCCeEE--EEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCC
Q 016446 199 EKLLVKQENENLQILDVRNAELM--EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 274 (389)
Q Consensus 199 ~~l~~~s~D~tIklWd~~tg~~~--~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~ 274 (389)
.-+++++.-|.+-+-|+. |.+. ..-+.-+.+|.+++|+.||++++.|- +|.|++||.+ ++.++.+..|+.++.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~-~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t-- 176 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMT-GNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT-- 176 (1206)
T ss_pred eeEEEEcCchhhhhhhhh-cccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc--
Confidence 345556666666666653 3221 11122346899999999999999996 9999999997 899999999988753
Q ss_pred CeeEEEECCCCCEEEEE
Q 016446 275 NTNNIYITSDQDLIISY 291 (389)
Q Consensus 275 ~v~sv~fSpdG~~laS~ 291 (389)
+|.-+-...++..+.++
T Consensus 177 ~vi~v~~t~~nS~llt~ 193 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTS 193 (1206)
T ss_pred eEEEEEEeCCCcEEEEc
Confidence 34555555666667765
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.04 E-value=1.8 Score=36.77 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=51.1
Q ss_pred eeEEEEEecCC---CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEE
Q 016446 188 NKKVDFIEQFN---EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS 263 (389)
Q Consensus 188 ~~~v~f~~~~~---~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~t 263 (389)
|.++++...++ ..|++||+|..||+++=. +++..+.. ...|.+++-.+.++ |+.+- +|||.+++-.-++-+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~-F~Y~l~NGTVGvY~~~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGR-FAYALANGTVGVYDRSQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCE-EEEEecCCEEEEEeCcceeeee
Confidence 34555554443 478999999999999753 55554443 34678887777755 66665 9999999875554443
Q ss_pred eccCc
Q 016446 264 FEDHL 268 (389)
Q Consensus 264 l~gh~ 268 (389)
=..|+
T Consensus 78 KSK~~ 82 (111)
T PF14783_consen 78 KSKNQ 82 (111)
T ss_pred ccCCC
Confidence 33343
No 379
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.99 E-value=0.71 Score=51.21 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=67.0
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEE
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS 245 (389)
|.|+- .||+.-+-.+.. -++.++.|. | .+.+++ |=+-+.+.+|+..+.+.-.....|..++.-+.|||+|..|.|
T Consensus 43 VtIfa-dtGEPqr~Vt~P-~hatSLCWH-p-e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t 118 (1416)
T KOG3617|consen 43 VTIFA-DTGEPQRDVTYP-VHATSLCWH-P-EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMT 118 (1416)
T ss_pred EEEEe-cCCCCCcccccc-eehhhhccC-h-HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEE
Confidence 44443 678865443321 234567776 2 344444 447799999999999998889999999999999999999999
Q ss_pred Ec-CCeEEEEeCC--Cc
Q 016446 246 FR-NRTVAVWNFR--GE 259 (389)
Q Consensus 246 ~s-D~tIklWd~~--G~ 259 (389)
+. =|.+.+|..+ |+
T Consensus 119 ~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 119 LDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred cCCCceeEEEEeeeccc
Confidence 98 8999999875 65
No 380
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.98 E-value=2.3 Score=43.87 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=71.7
Q ss_pred CCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcE-----EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 016446 227 EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~-----l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~ 300 (389)
-...+.+++|.++|.+++.+.+|.+ +|..+ |+- +..+.-.... ..+.+++|.+|++.+++|.
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~---~~l~~v~~~~d~~~~a~G~-------- 346 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRG---FGILDVGYRSKKEAWAAGG-------- 346 (398)
T ss_pred CccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCC---cceEEEEEcCCCcEEEEEC--------
Confidence 3456889999999999998888887 66654 642 2222211111 1268999999999999873
Q ss_pred cCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecC
Q 016446 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 301 ~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~ 380 (389)
.|.|.... .-|+.-+..+.-.. . -...+.+.|.++++-.++|.
T Consensus 347 ----~G~v~~s~-D~G~tW~~~~~~~~----------------------------~---~~~ly~v~f~~~~~g~~~G~- 389 (398)
T PLN00033 347 ----SGILLRST-DGGKSWKRDKGADN----------------------------I---AANLYSVKFFDDKKGFVLGN- 389 (398)
T ss_pred ----CCcEEEeC-CCCcceeEccccCC----------------------------C---CcceeEEEEcCCCceEEEeC-
Confidence 47776654 45665444432110 0 03688999999988777765
Q ss_pred CCcEEE
Q 016446 381 HGLVHV 386 (389)
Q Consensus 381 D~tIrl 386 (389)
+|.|--
T Consensus 390 ~G~il~ 395 (398)
T PLN00033 390 DGVLLR 395 (398)
T ss_pred CcEEEE
Confidence 666543
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.89 E-value=0.98 Score=50.35 Aligned_cols=135 Identities=15% Similarity=0.118 Sum_probs=90.3
Q ss_pred CCeeEEEEEcCCCeEEEEEeecCCc-eeEEEE----EecCCCeEEEEeCCCcEEEEECCC-CeEEEEcccC----CCceE
Q 016446 163 SHVPLKILSIEDGTVLKVFYHLLHR-NKKVDF----IEQFNEKLLVKQENENLQILDVRN-AELMEVSRTE----FMTPS 232 (389)
Q Consensus 163 ~d~tiklWd~~tG~~l~tl~~~~~~-~~~v~f----~~~~~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh----~~~v~ 232 (389)
....+.--|+++|+.+.....|-.. +..++= ..-.++....|=.+..+-.||.+- |..+-.-..| .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 3467888899999999998855332 333321 111245566677889999999985 3322221222 23456
Q ss_pred EEEEcCCCcEEEEEcCCeEEEEeCCCcEEEE-eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 233 AFIFLYENQLFLTFRNRTVAVWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 233 sv~fspdg~~laS~sD~tIklWd~~G~~l~t-l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
++|-+.+|.+.+.+.+|-|||+|.-|..-+| |.|=..+ |..|..|.||++|+..|. ..+-|.
T Consensus 582 ~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~p-----I~~iDvt~DGkwilaTc~------------tyLlLi 644 (794)
T PF08553_consen 582 CFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDP-----IIGIDVTADGKWILATCK------------TYLLLI 644 (794)
T ss_pred EEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCC-----eeEEEecCCCcEEEEeec------------ceEEEE
Confidence 7777888975544449999999976654333 4444445 799999999999998874 688888
Q ss_pred eCC
Q 016446 312 SIL 314 (389)
Q Consensus 312 d~~ 314 (389)
+..
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 853
No 382
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.16 Score=54.17 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=53.3
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceE-EEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 187 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS-AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~-sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t 263 (389)
.+..+.++ |.-+.||..-++|.|-|.-+. -+.+-++.-|...+. +++|-|||++||-|- ||||+|-|++ |..+..
T Consensus 22 ~i~~~ewn-P~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWN-PKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEc-CccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 34555665 445677777777777555554 333444444555555 999999999999996 9999999997 887765
No 383
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.61 E-value=0.21 Score=53.95 Aligned_cols=114 Identities=12% Similarity=0.026 Sum_probs=77.7
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEE--EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~--tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
...|.-=++.-.+++++-|+ -|.+-|++..|...+ +.+|-.. .+....+|++..+.|.|+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~-----~~~~~~vs~~e~lvAagt~~---------- 97 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATG-----ITCVRSVSSVEYLVAAGTAS---------- 97 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccc-----eEEEEEecchhHhhhhhcCC----------
Confidence 33455556788899999997 899999999854333 3333222 25677889999988887653
Q ss_pred CCeEEEEeCCCCeEE-EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 305 AGSINVSSILTGKCL-AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 305 D~tIklWd~~tg~~l-~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
|-|-+.-++.++.- ..+-.| .+..|-..|+++.||+||..+++|..-|+
T Consensus 98 -g~V~v~ql~~~~p~~~~~~t~-----------------------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 98 -GRVSVFQLNKELPRDLDYVTP-----------------------------CDKSHKCRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred -ceEEeehhhccCCCcceeecc-----------------------------ccccCCceEEEEEecccccEEeecCCCce
Confidence 77877776543211 111111 11112369999999999999999999999
Q ss_pred EEE
Q 016446 384 VHV 386 (389)
Q Consensus 384 Irl 386 (389)
|.+
T Consensus 148 v~~ 150 (726)
T KOG3621|consen 148 VVL 150 (726)
T ss_pred EEE
Confidence 865
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=0.17 Score=56.91 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=61.1
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEE---EEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCc
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTML---YSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 187 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l---~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~ 187 (389)
+..+|.|+.-|-|-+.|+ +|.+- +..+ +..|.+++|+ +|.+++.+- .++-|++||+++++.++.+..|+++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~-~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~---~~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDM-TGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL---GDGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred eeeEEEEcCchhhhhhhh-hcccchhhcCCccCCcceeeEecCCCceecccc---CCCcEEEEEccCCcceeeeeecCCc
Confidence 456788888888888887 44421 1122 4689999999 888887663 4478999999999999999999888
Q ss_pred eeEEEEEe
Q 016446 188 NKKVDFIE 195 (389)
Q Consensus 188 ~~~v~f~~ 195 (389)
...|-++-
T Consensus 175 ~t~vi~v~ 182 (1206)
T KOG2079|consen 175 VTGVIFVG 182 (1206)
T ss_pred cceEEEEE
Confidence 88887763
No 385
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.15 E-value=6.7 Score=39.03 Aligned_cols=178 Identities=12% Similarity=0.149 Sum_probs=111.6
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec----C---CcEEEEEEcCCceEEEEecC------CC-CeeEEEEE
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----D---KHVQEIKISPGIMLLIFNRS------SS-HVPLKILS 171 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~----~---~~V~~vafS~g~~la~~~~~------s~-d~tiklWd 171 (389)
..++ +.|+++++ +.-+.+++++++..+..+. + ..-+++.+.|.+.+..+... +. -.+-.||-
T Consensus 72 ~~~d-~~g~Lv~~---~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr 147 (307)
T COG3386 72 ALID-AGGRLIAC---EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYR 147 (307)
T ss_pred eeec-CCCeEEEE---ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEE
Confidence 5665 56655553 2456788877676643332 1 34567778843344343322 10 11225666
Q ss_pred cC-CCeEEEEEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCC--CeE-----EEEcccCCCceEEEEEcCCCcE
Q 016446 172 IE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN--AEL-----MEVSRTEFMTPSAFIFLYENQL 242 (389)
Q Consensus 172 ~~-tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~t--g~~-----~~~l~gh~~~v~sv~fspdg~~ 242 (389)
+. .|..++-+..+...-+.++|+ ||+..+..+ +..+.|.-+++.- |.. ...+..+...+-.++.-.+|.+
T Consensus 148 ~~p~g~~~~l~~~~~~~~NGla~S-pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l 226 (307)
T COG3386 148 VDPDGGVVRLLDDDLTIPNGLAFS-PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL 226 (307)
T ss_pred EcCCCCEEEeecCcEEecCceEEC-CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE
Confidence 66 678888777665666999998 778777776 5678888887752 221 2222334455666667778888
Q ss_pred EEEEc-CC-eEEEEeCCCcEEEEeccCcCCcCCCCeeEEEE-CCCCCEEEEEec
Q 016446 243 FLTFR-NR-TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISYCK 293 (389)
Q Consensus 243 laS~s-D~-tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~f-SpdG~~laS~s~ 293 (389)
.+++- +| -|..|+.+|+++...+-.... +.+++| .|+.++|...+.
T Consensus 227 w~~a~~~g~~v~~~~pdG~l~~~i~lP~~~-----~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 227 WVAAVWGGGRVVRFNPDGKLLGEIKLPVKR-----PTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEecccCCceEEEECCCCcEEEEEECCCCC-----CccceEeCCCcCEEEEEec
Confidence 87554 54 899999999999888766433 456666 667777776654
No 386
>PRK13684 Ycf48-like protein; Provisional
Probab=94.09 E-value=4.2 Score=40.70 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=86.7
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEE-EECCCCe-EEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEE
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQI-LDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVT 262 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIkl-Wd~~tg~-~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~ 262 (389)
+.+..+++. + ++.+++.+..|.+.. +|- .|+ -.....+-...++++++.|++++++.+..|.+++=..+ |+--+
T Consensus 173 g~~~~i~~~-~-~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRS-P-DGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEEC-C-CCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 456777775 4 345555566665542 222 222 22222334457899999999999888878887543344 55332
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
...-+.. .+...+.+++|.|+++.++.|. +|.|. .....|+--+.++.+..
T Consensus 250 ~~~~~~~-~~~~~l~~v~~~~~~~~~~~G~------------~G~v~-~S~d~G~tW~~~~~~~~--------------- 300 (334)
T PRK13684 250 KPIIPEI-TNGYGYLDLAYRTPGEIWAGGG------------NGTLL-VSKDGGKTWEKDPVGEE--------------- 300 (334)
T ss_pred cccCCcc-ccccceeeEEEcCCCCEEEEcC------------CCeEE-EeCCCCCCCeECCcCCC---------------
Confidence 2221100 0001267899999999888752 36553 33344554444432220
Q ss_pred ccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
. ....+.+.|-.+++.++.| ..|+|--|
T Consensus 301 -------------~---~~~~~~~~~~~~~~~~~~G-~~G~il~~ 328 (334)
T PRK13684 301 -------------V---PSNFYKIVFLDPEKGFVLG-QRGVLLRY 328 (334)
T ss_pred -------------C---CcceEEEEEeCCCceEEEC-CCceEEEe
Confidence 0 0367888888888777755 46666444
No 387
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.04 E-value=1.9 Score=45.19 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=41.8
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc--EEEEeccCcCCcCCCCeeEEEECCCC
Q 016446 222 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQ 285 (389)
Q Consensus 222 ~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~--~l~tl~gh~~~~~~~~v~sv~fSpdG 285 (389)
+++...-...+.++|.|||++|++-. .|.|++++.. +. .+..+..-...........|+|+||=
T Consensus 23 ~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34444556889999999999999998 6999999865 32 23223210000001236899999984
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.01 E-value=6 Score=37.95 Aligned_cols=153 Identities=15% Similarity=0.136 Sum_probs=89.5
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeE
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 125 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~ti 125 (389)
.+.+.+.||||+.+|.+.. .++ .-.|+-...+.. ...+.. ......-.|+ ++|.+.+....+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~--~~~-------~~~L~~~~~~~~--~~~~~~---g~~l~~PS~d-~~g~~W~v~~~~~~~ 89 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE--GDG-------GRSLYVGPAGGP--VRPVLT---GGSLTRPSWD-PDGWVWTVDDGSGGV 89 (253)
T ss_pred cccceEECCCCCeEEEEEE--cCC-------CCEEEEEcCCCc--ceeecc---CCcccccccc-CCCCEEEEEcCCCce
Confidence 6899999999999988762 222 122333333332 111211 1122346887 889998888888888
Q ss_pred EEEe-CCCCeEE-EEec--C-C-cEEEEEEc-CCceEEEEecCCCCeeEEEEEcC---CC--eE----EEEEeecCCcee
Q 016446 126 KVFD-LKNYTML-YSIS--D-K-HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE---DG--TV----LKVFYHLLHRNK 189 (389)
Q Consensus 126 klWd-l~~g~~l-~tl~--~-~-~V~~vafS-~g~~la~~~~~s~d~tiklWd~~---tG--~~----l~tl~~~~~~~~ 189 (389)
+++. ..+|+.. ..+. . . .|.++++| ||.++|.-.....+..|.+=-+. .| .. +.........+.
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVT 169 (253)
T ss_pred EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcce
Confidence 8884 4455532 2222 1 2 89999999 79999888766555666654332 34 11 122222235678
Q ss_pred EEEEEecCCCeEEE-Ee-CCCcEEE-EEC
Q 016446 190 KVDFIEQFNEKLLV-KQ-ENENLQI-LDV 215 (389)
Q Consensus 190 ~v~f~~~~~~~l~~-~s-~D~tIkl-Wd~ 215 (389)
.++|. + +..|+. +. .+..+.. ..+
T Consensus 170 ~v~W~-~-~~~L~V~~~~~~~~~~~~v~~ 196 (253)
T PF10647_consen 170 DVAWS-D-DSTLVVLGRSAGGPVVRLVSV 196 (253)
T ss_pred eeeec-C-CCEEEEEeCCCCCceeEEEEc
Confidence 89997 3 444544 43 5555554 444
No 389
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.82 E-value=5.8 Score=40.96 Aligned_cols=137 Identities=10% Similarity=0.040 Sum_probs=85.1
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCCCeEE---EEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe----
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT---- 176 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l---~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~---- 176 (389)
+..+ +||.+++.+..-.-++-|| .|+.. .... ...+.+++|. +|..++++. . +.+ +|....|+
T Consensus 244 v~~~-~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~---G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 244 VNRS-PDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-G---GGL-YVSKGTGLTEED 315 (398)
T ss_pred EEEc-CCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeC-C---ceE-EEecCCCCcccc
Confidence 4555 7888888766555566666 44421 2222 4678999999 566666542 2 343 55656665
Q ss_pred -EEEEEeec--CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc---ccCCCceEEEEEcCCCcEEEEEcCCe
Q 016446 177 -VLKVFYHL--LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---RTEFMTPSAFIFLYENQLFLTFRNRT 250 (389)
Q Consensus 177 -~l~tl~~~--~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l---~gh~~~v~sv~fspdg~~laS~sD~t 250 (389)
.+..+... ...+..+.|. +++.+.+.+.+|.+.... ..|+.-+.. .+-....++|.|.++++.+++|.+|.
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~--~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYR--SKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred cceeecccCCCCcceEEEEEc--CCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcE
Confidence 23333311 1235777775 366777888888877764 345542222 22345688999999999999998887
Q ss_pred EEE
Q 016446 251 VAV 253 (389)
Q Consensus 251 Ikl 253 (389)
|--
T Consensus 393 il~ 395 (398)
T PLN00033 393 LLR 395 (398)
T ss_pred EEE
Confidence 643
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=0.78 Score=48.50 Aligned_cols=131 Identities=13% Similarity=0.114 Sum_probs=91.1
Q ss_pred eEEE-EeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc--------EEEEEcCCeEEEEeCC--Cc-EEEEeccC
Q 016446 200 KLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ--------LFLTFRNRTVAVWNFR--GE-LVTSFEDH 267 (389)
Q Consensus 200 ~l~~-~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~--------~laS~sD~tIklWd~~--G~-~l~tl~gh 267 (389)
.|+. +..-..++=-|++.|+.+....-|.+ |.-+.|.||++ .|+--+|+.|-=||.+ |. .|.--++|
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 3444 44556777789999999999988887 77888888754 4555568889899984 65 45555666
Q ss_pred cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE-ecCCCCCCCcccccCCCCCCCcccc
Q 016446 268 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 268 ~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
+-.. ...-.+.+=+.+|-+ |.||. +|.|||+| ..|..-.| |+|--
T Consensus 426 qy~~-k~nFsc~aTT~sG~I-vvgS~-----------~GdIRLYd-ri~~~AKTAlPgLG-------------------- 471 (644)
T KOG2395|consen 426 QYST-KNNFSCFATTESGYI-VVGSL-----------KGDIRLYD-RIGRRAKTALPGLG-------------------- 471 (644)
T ss_pred cccc-ccccceeeecCCceE-EEeec-----------CCcEEeeh-hhhhhhhhcccccC--------------------
Confidence 6421 112356666677764 44554 69999999 46665444 33322
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
++|.-|.-+.||++|+...
T Consensus 472 --------------~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 472 --------------DAIKHVDVTADGKWILATC 490 (644)
T ss_pred --------------CceeeEEeeccCcEEEEec
Confidence 5899999999999887665
No 391
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.55 E-value=6.2 Score=39.23 Aligned_cols=64 Identities=6% Similarity=0.214 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCcEEEEEc-C------CeEEEEeCCCcEEEEec---cC-------cCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 230 TPSAFIFLYENQLFLTFR-N------RTVAVWNFRGELVTSFE---DH-------LLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 230 ~v~sv~fspdg~~laS~s-D------~tIklWd~~G~~l~tl~---gh-------~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
-.+++++.++|.+++|.- + ..|.-.+.+|+.++.+. .. .....+....+++++|||++|..+-
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 567899999999999997 8 88888888888876652 11 2233445578999999999777765
Q ss_pred c
Q 016446 293 K 293 (389)
Q Consensus 293 ~ 293 (389)
+
T Consensus 166 E 166 (326)
T PF13449_consen 166 E 166 (326)
T ss_pred C
Confidence 4
No 392
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.53 E-value=7.4 Score=38.16 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=79.4
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEe-cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSI-SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl-~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
-.++..||+.+.++-=|.++|++...- -+..+.+=|.==|++++.+.-. +-+.+.+..||+....|... +.+..-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~---g~lYfl~~~tGs~~w~f~~~-~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYS---GGLYFLCVKTGSQIWNFVIL-ETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEcc---CcEEEEEecchhheeeeeeh-hhhccc
Confidence 356778999999999999999987543 3566655554446667676544 56888899999777776632 445444
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVS 224 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l 224 (389)
+-..++++.|-.++.|++...-|.++..|+-.+
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 444467889999999999999999998886654
No 393
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.28 E-value=3.9 Score=40.52 Aligned_cols=181 Identities=9% Similarity=0.017 Sum_probs=103.1
Q ss_pred CceEEEEecccc-eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecC----CCcceeeee------eeEeEeccCCCCC
Q 016446 22 SGVCAAFSRETN-RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD----NFSSLKCRS------TKIEYIRRGKPDS 90 (389)
Q Consensus 22 ~gtiklW~~~tg-~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~----d~~~l~~~~------~~l~~i~~g~~~~ 90 (389)
-|.|-+||...+ +.+-.+..|. -.=..|.+.+||.+|+.+. |+. ||+--++.- .-+-|-.+|+++.
T Consensus 139 rGViGvYd~r~~fqrvgE~~t~G-iGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 139 RGVIGVYDAREGFQRVGEFSTHG-IGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CceEEEEecccccceecccccCC-cCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhh
Confidence 367888886422 3444455543 3446788999999998854 321 443222221 1233446787753
Q ss_pred cceeEeeecccCceeEEEecCCCeEEEEecCCCe-----EEEEeCCCCeEEEEec---------CCcEEEEEEc-CCceE
Q 016446 91 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI-----YKVFDLKNYTMLYSIS---------DKHVQEIKIS-PGIML 155 (389)
Q Consensus 91 ~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t-----iklWdl~~g~~l~tl~---------~~~V~~vafS-~g~~l 155 (389)
...|-.+...-.+..++.. +||..+.-+-..|- --|=-...|+++.-+. .+.|-+||.+ ....+
T Consensus 216 kh~Lp~~l~~lSiRHld~g-~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIG-RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred hccCchhhhhcceeeeeeC-CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 3333221222345668886 88887776543221 1111112344443332 2579999999 55555
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEE
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 213 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklW 213 (389)
+.+++.+ +..-+||..||..+..-. +.+++=..+..+-+++++.+|.|.++
T Consensus 295 ~lTSP~G--N~~vi~da~tG~vv~~a~-----l~daaGva~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 295 ALTSPRG--NRAVIWDAATGAVVSEAA-----LPDAAGVAAAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred EEecCCC--CeEEEEEcCCCcEEeccc-----ccccccceeccCceEEecCCceEEec
Confidence 5555554 577899999999876532 22333333445667777788888776
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.15 E-value=0.26 Score=46.83 Aligned_cols=104 Identities=6% Similarity=0.033 Sum_probs=63.6
Q ss_pred CCeEEEEeCCCcEEEEECC-CCeEEEEcccC-CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCC
Q 016446 198 NEKLLVKQENENLQILDVR-NAELMEVSRTE-FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 273 (389)
Q Consensus 198 ~~~l~~~s~D~tIklWd~~-tg~~~~~l~gh-~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~ 273 (389)
+..++.|..|+.|.+|+.. -|........- ..-..-|.-..++.+..++. |+.||.|+.. ++.+-.--.|... +
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~-~- 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE-S- 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC-C-
Confidence 4678888999999999874 12221111111 11122222234555666776 9999999997 7766655556521 1
Q ss_pred CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 274 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+.....+..+++|+++ +-|.|..+|.||+.
T Consensus 148 --~e~~ivv~sd~~i~~a---------~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 --GEELIVVGSDEFLKIA---------DTSHDRVLKKWNVE 177 (238)
T ss_pred --cceeEEecCCceEEee---------ccccchhhhhcchh
Confidence 3555566677777776 12345789999875
No 395
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.11 E-value=0.49 Score=51.21 Aligned_cols=119 Identities=11% Similarity=0.072 Sum_probs=84.1
Q ss_pred ccccEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 2 KRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 2 ~~~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
+|.+...+-...++++.++..|.+.|+++.+|+.+..=+......+-....|++..+.|. |+.. ..|-+.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAa----gt~~------g~V~v~ 103 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAA----GTAS------GRVSVF 103 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhh----hcCC------ceEEee
Confidence 456677777779999999999999999998776665444333356777778888886666 4555 444444
Q ss_pred EeccCCCCCcceeEeee---cccCceeEEEecCCCeEEEEecCCCeEEEEeCCC
Q 016446 82 YIRRGKPDSGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 132 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~---~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~ 132 (389)
-+..+.. ..+..+++. +...|.++++| +||..|-+|...|+|-+=.|.+
T Consensus 104 ql~~~~p-~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELP-RDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCC-CcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEech
Confidence 4443322 234455544 34456779998 9999999999999998887755
No 396
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.94 E-value=0.2 Score=55.23 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=74.8
Q ss_pred EEcCCCcEEEEE--c---CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 235 IFLYENQLFLTF--R---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 235 ~fspdg~~laS~--s---D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
.|.|--.+||.+ | -|.|-|+--+|+.-+..+- |+ -+.++++.|.--.||+|=. -|-+.
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~---P~---hatSLCWHpe~~vLa~gwe-----------~g~~~ 84 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTY---PV---HATSLCWHPEEFVLAQGWE-----------MGVSD 84 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEecCCCCCccccc---ce---ehhhhccChHHHHHhhccc-----------cceeE
Confidence 455555555544 2 5788888777885432221 11 1578999999999998743 38899
Q ss_pred EEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 310 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 310 lWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+|...+.+.-.....|. .+|.-|.|||||..|+|+.+=|.|.+|+
T Consensus 85 v~~~~~~e~htv~~th~----------------------------------a~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 85 VQKTNTTETHTVVETHP----------------------------------APIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred EEecCCceeeeeccCCC----------------------------------CCceeEEecCCCCeEEEcCCCceeEEEE
Confidence 99976655444445566 5899999999999999999999999997
No 397
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.88 E-value=9.2 Score=36.67 Aligned_cols=141 Identities=11% Similarity=0.035 Sum_probs=82.9
Q ss_pred cEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEE-eecCCceeEEEEEecCCCeEEEEeCCCcEEEEE-CCCCe
Q 016446 143 HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF-YHLLHRNKKVDFIEQFNEKLLVKQENENLQILD-VRNAE 219 (389)
Q Consensus 143 ~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl-~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd-~~tg~ 219 (389)
.+.+.|+| +|+.+|.-........+..+. .|.....+ .+ .....-.|. +++...+....+...+++. ..+|+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d-~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWD-PDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--Ccccccccc-CCCCEEEEEcCCCceEEEEecCCCc
Confidence 78999999 788777664222234555555 34433333 32 344555665 4555555555666667773 44444
Q ss_pred E--EEEcccCCC-ceEEEEEcCCCcEEEEEc----CCeEEEEeC----CCc--E----EEEeccCcCCcCCCCeeEEEEC
Q 016446 220 L--MEVSRTEFM-TPSAFIFLYENQLFLTFR----NRTVAVWNF----RGE--L----VTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 220 ~--~~~l~gh~~-~v~sv~fspdg~~laS~s----D~tIklWd~----~G~--~----l~tl~gh~~~~~~~~v~sv~fS 282 (389)
. +..-..... .|.++.+||||..+|--. ++.|.+=-+ .|. . +........ .+.+++|.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~-----~v~~v~W~ 174 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS-----DVTDVAWS 174 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC-----cceeeeec
Confidence 3 222111111 899999999999988764 556655543 241 1 111111111 27899999
Q ss_pred CCCCEEEEEec
Q 016446 283 SDQDLIISYCK 293 (389)
Q Consensus 283 pdG~~laS~s~ 293 (389)
+++.+++-+..
T Consensus 175 ~~~~L~V~~~~ 185 (253)
T PF10647_consen 175 DDSTLVVLGRS 185 (253)
T ss_pred CCCEEEEEeCC
Confidence 99999888754
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.34 E-value=0.39 Score=34.42 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEE
Q 016446 229 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 261 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l 261 (389)
..|..++|+|...+||.+. ||.|-|+.++|+.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 4688999999999999998 99999999987654
No 399
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.83 E-value=15 Score=36.58 Aligned_cols=164 Identities=16% Similarity=0.266 Sum_probs=102.1
Q ss_pred ecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEe
Q 016446 40 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS 119 (389)
Q Consensus 40 ~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~ 119 (389)
.|-+ +.|-++.|||+-++|.++- +. ...-++--.+|++..+.+| ..+..+..+++. -+|++.++-
T Consensus 82 ~g~~-~nvS~LTynp~~rtLFav~----n~------p~~iVElt~~GdlirtiPL---~g~~DpE~Ieyi-g~n~fvi~d 146 (316)
T COG3204 82 LGET-ANVSSLTYNPDTRTLFAVT----NK------PAAIVELTKEGDLIRTIPL---TGFSDPETIEYI-GGNQFVIVD 146 (316)
T ss_pred cccc-ccccceeeCCCcceEEEec----CC------CceEEEEecCCceEEEecc---cccCChhHeEEe-cCCEEEEEe
Confidence 4444 3499999999999999852 22 2222444478888555444 234556779998 789999988
Q ss_pred cCCCeEEEEeCCCCeEE-------EEec-----CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEE---EEEee
Q 016446 120 AQDSIYKVFDLKNYTML-------YSIS-----DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVL---KVFYH 183 (389)
Q Consensus 120 s~D~tiklWdl~~g~~l-------~tl~-----~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l---~tl~~ 183 (389)
-.|+++.+..+...... .+|. ...-..+|..| +++|..+ .+..+++|+.++.+.-- +....
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a---KEr~P~~I~~~~~~~~~l~~~~~~~ 223 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA---KERNPIGIFEVTQSPSSLSVHASLD 223 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE---EccCCcEEEEEecCCcccccccccC
Confidence 89999999998765322 1221 13578899994 6666655 33468888776543311 11111
Q ss_pred cC-------CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE
Q 016446 184 LL-------HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 222 (389)
Q Consensus 184 ~~-------~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~ 222 (389)
++ .-+-.+.|.++.+..++-+.+++.+.--|. .|+.+.
T Consensus 224 ~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~ 268 (316)
T COG3204 224 PTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIE 268 (316)
T ss_pred cccccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeee
Confidence 11 123455666554555555778888887777 455433
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.48 E-value=2.6 Score=45.29 Aligned_cols=146 Identities=10% Similarity=0.175 Sum_probs=91.3
Q ss_pred CCCCeEEEEe----cC--CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEE---EEEeecCCceeEEEEEecC---
Q 016446 130 LKNYTMLYSI----SD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL---KVFYHLLHRNKKVDFIEQF--- 197 (389)
Q Consensus 130 l~~g~~l~tl----~~--~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l---~tl~~~~~~~~~v~f~~~~--- 197 (389)
|-.|+++++. ++ +.|..+|+.||++++-+. +.+ .+|+.- -+.-|...+|..+.|.|+.
T Consensus 2 LGkgkLLRTGlNaL~qAiHPvhGlaWTDGkqVvLT~-------L~l---~~gE~kfGds~viGqFEhV~GlsW~P~~~~~ 71 (671)
T PF15390_consen 2 LGKGKLLRTGLNALHQAIHPVHGLAWTDGKQVVLTD-------LQL---HNGEPKFGDSKVIGQFEHVHGLSWAPPCTAD 71 (671)
T ss_pred CcccchhhcchHHHHhhhccccceEecCCCEEEEEe-------eee---eCCccccCCccEeeccceeeeeeecCcccCC
Confidence 3456666654 32 789999999988775442 222 233321 0111334678999998542
Q ss_pred CCeEEEEeCCCcEEEEECC--C---CeEE--EEcc---cCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC--Cc-EEE
Q 016446 198 NEKLLVKQENENLQILDVR--N---AELM--EVSR---TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GE-LVT 262 (389)
Q Consensus 198 ~~~l~~~s~D~tIklWd~~--t---g~~~--~~l~---gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~--G~-~l~ 262 (389)
--.+++-+..+.|-+|.+. + ++.+ ++-+ .-.--...+.|.|....|+--. |-.| +.+++ +. ...
T Consensus 72 ~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVka 150 (671)
T PF15390_consen 72 TPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKA 150 (671)
T ss_pred CCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEE
Confidence 2378899999999999886 1 2221 1111 1111234567889888887553 6666 77774 33 344
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
.++++.. |...+|++||++|+.+=
T Consensus 151 Di~~~G~------IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 151 DIKTSGL------IHCACWTKDGQRLVVAV 174 (671)
T ss_pred eccCCce------EEEEEecCcCCEEEEEe
Confidence 5655432 78999999999999874
No 401
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.05 E-value=0.47 Score=33.98 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=26.2
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 361 EDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 361 ~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+.|..++|||....||.|+.||.|.+++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~R 39 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYR 39 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEE
Confidence 5799999999999999999999998876
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.51 E-value=3.3 Score=43.99 Aligned_cols=137 Identities=9% Similarity=0.035 Sum_probs=87.0
Q ss_pred EecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcC---CceEEEEec--CCCCeeEEEEEcC-CCe-EEEEEeecCCcee
Q 016446 118 YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP---GIMLLIFNR--SSSHVPLKILSIE-DGT-VLKVFYHLLHRNK 189 (389)
Q Consensus 118 s~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~---g~~la~~~~--~s~d~tiklWd~~-tG~-~l~tl~~~~~~~~ 189 (389)
++.....++==|++.|+.+-+++ ...|.-+.|.| +++|.+.+. +-.|+.|--||.+ .|. .|..-++| .-..
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k-qy~~ 429 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK-QYST 429 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc-cccc
Confidence 33333344445888899887776 44577777774 333311000 1224677778865 222 33333332 1111
Q ss_pred EEEEE---ecCCCeEEEEeCCCcEEEEECCCCeE-EEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeC
Q 016446 190 KVDFI---EQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 256 (389)
Q Consensus 190 ~v~f~---~~~~~~l~~~s~D~tIklWd~~tg~~-~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~ 256 (389)
.-.|+ .-.+++|++||.+|.|||||- .|.. ...|.|-..+|.-|.-+.||+.|+.-.+..+-|=++
T Consensus 430 k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 430 KNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 12222 234689999999999999998 5554 445788889999999999999999888888887774
No 403
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.21 E-value=0.12 Score=57.20 Aligned_cols=132 Identities=16% Similarity=0.118 Sum_probs=77.8
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECC--CCeEEEEc-----ccCCCceEEEE---EcCCCcEEEEEc-CCeEE
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVR--NAELMEVS-----RTEFMTPSAFI---FLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~--tg~~~~~l-----~gh~~~v~sv~---fspdg~~laS~s-D~tIk 252 (389)
..+.+..++|..-+-.+++ -.=|..-+||+. .|++...| ......+.-|. |-++.-++-.+- +++|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 3477777777421112222 122667888876 56653322 22222333344 455676666665 88999
Q ss_pred EEeCCCcEEEEeccCcCCcCCC------CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC-CCe----EEEE
Q 016446 253 VWNFRGELVTSFEDHLLWHPDC------NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGK----CLAK 321 (389)
Q Consensus 253 lWd~~G~~l~tl~gh~~~~~~~------~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~-tg~----~l~t 321 (389)
|-+.+..+..-+.+|..++.+- ++.=-..||||+.+|.++.| |.++.|.+. +|+ |++.
T Consensus 209 lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d-----------G~v~f~Qiyi~g~~~~rclhe 277 (1283)
T KOG1916|consen 209 LLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD-----------GSVGFYQIYITGKIVHRCLHE 277 (1283)
T ss_pred EeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC-----------CccceeeeeeeccccHhhhhc
Confidence 8777644435566788764221 01111269999999999875 888888763 344 7777
Q ss_pred ecCCCCC
Q 016446 322 INATNCS 328 (389)
Q Consensus 322 l~gH~~~ 328 (389)
.+.|+++
T Consensus 278 wkphd~~ 284 (1283)
T KOG1916|consen 278 WKPHDKH 284 (1283)
T ss_pred cCCCCCC
Confidence 7778744
No 404
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.13 E-value=4.4 Score=39.04 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=49.9
Q ss_pred EEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC--eEEEEeCCC---cEE-E----EeccCcCCcCCCCeeE
Q 016446 211 QILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRG---ELV-T----SFEDHLLWHPDCNTNN 278 (389)
Q Consensus 211 klWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~--tIklWd~~G---~~l-~----tl~gh~~~~~~~~v~s 278 (389)
-+||+.+++..-.-....-.-.+=+|.|||++|.+|+ || .||+++... .|- . .|. ..-| | .+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RW----Y-pT 122 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRW----Y-PT 122 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCc----c-cc
Confidence 4788888876544333333444456899999999996 54 688887532 221 1 121 1123 2 56
Q ss_pred EEECCCCCEEEEEecC
Q 016446 279 IYITSDQDLIISYCKA 294 (389)
Q Consensus 279 v~fSpdG~~laS~s~D 294 (389)
+..=|||+.|+.|+..
T Consensus 123 ~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSN 138 (243)
T ss_pred ceECCCCCEEEEeCcC
Confidence 7778999999999764
No 405
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.47 E-value=3.4 Score=38.99 Aligned_cols=70 Identities=11% Similarity=0.060 Sum_probs=55.2
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE-------cc-------cCCCceEEEEEcCCCcEEEEEcCCeEEEEeC
Q 016446 191 VDFIEQFNEKLLVKQENENLQILDVRNAELMEV-------SR-------TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 256 (389)
Q Consensus 191 v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~-------l~-------gh~~~v~sv~fspdg~~laS~sD~tIklWd~ 256 (389)
+.|....+.++++-..+|.+.+||+++++++-. +. .....|.++.++.+|.-+++-++|..-.|+.
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 344445688888889999999999999987443 22 4567888899999999999999888889998
Q ss_pred CCcE
Q 016446 257 RGEL 260 (389)
Q Consensus 257 ~G~~ 260 (389)
+=++
T Consensus 95 ~L~~ 98 (219)
T PF07569_consen 95 DLGC 98 (219)
T ss_pred ccce
Confidence 8333
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.32 E-value=25 Score=35.03 Aligned_cols=111 Identities=9% Similarity=0.033 Sum_probs=57.3
Q ss_pred cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEe-ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 226 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl-~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
+-...+..+..++||+++|.++ -...+-||--...-+.. ..-.. .|.++.|+|||.+.+.+ .
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~-----riq~~gf~~~~~lw~~~-~---------- 205 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSR-----RIQSMGFSPDGNLWMLA-R---------- 205 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS------EEEEEE-TTS-EEEEE-T----------
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccc-----eehhceecCCCCEEEEe-C----------
Confidence 3345688888899999999998 45667888632211111 11122 38999999999987764 3
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCC
Q 016446 304 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 382 (389)
Q Consensus 304 ~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~ 382 (389)
.|-|+.=+. ..-..+++.+.. ..+..+ -.+..++|.|+++..|+|+...
T Consensus 206 -Gg~~~~s~~--~~~~~~w~~~~~------~~~~~~---------------------~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 206 -GGQIQFSDD--PDDGETWSEPII------PIKTNG---------------------YGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp -TTEEEEEE---TTEEEEE---B-------TTSS-----------------------S-EEEEEESSSS-EEEEESTT-
T ss_pred -CcEEEEccC--CCCccccccccC------CcccCc---------------------eeeEEEEecCCCCEEEEeCCcc
Confidence 367776651 222333333220 000000 3589999999999999887643
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.30 E-value=6.3 Score=38.11 Aligned_cols=86 Identities=8% Similarity=0.064 Sum_probs=55.7
Q ss_pred EEEEc-CCceEEEEecCCCCeeEEEEE--cCCCeEEEE-----EeecCCceeEEEEEecCC------CeE-EEEeCCCcE
Q 016446 146 EIKIS-PGIMLLIFNRSSSHVPLKILS--IEDGTVLKV-----FYHLLHRNKKVDFIEQFN------EKL-LVKQENENL 210 (389)
Q Consensus 146 ~vafS-~g~~la~~~~~s~d~tiklWd--~~tG~~l~t-----l~~~~~~~~~v~f~~~~~------~~l-~~~s~D~tI 210 (389)
.++++ +..++... ++.+.+|.-|| .+||...+. |+.. .+-.-..||| +.| ++.=..++|
T Consensus 162 gl~Wd~d~K~fY~i--Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~----~~~e~~~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYI--DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS----QPFESLEPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred cccccccCcEEEEE--ccCceEEeeeecCCCcccccCcceeEEeccC----CCcCCCCCCcceEccCCcEEEEEecCcEE
Confidence 45555 55555554 66678998898 888876532 2210 0000011222 233 334477999
Q ss_pred EEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 211 QILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 211 klWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
...|..||+.++.+.=-...+++++|-
T Consensus 236 ~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EEECCCCCcEEEEEEcCCCceEEEEec
Confidence 999999999999887778999999994
No 408
>PHA02713 hypothetical protein; Provisional
Probab=88.58 E-value=22 Score=38.14 Aligned_cols=203 Identities=8% Similarity=0.003 Sum_probs=101.8
Q ss_pred EeeccEEEEEecC------ceEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 10 VAARDIVFALAHS------GVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 10 ~~~~~~~a~~~~~------gtiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
+..+.+.++|..+ .++-.+|..+++ .+..++... -...+-.-+|+..|. |+.+ ..-....+..+
T Consensus 301 ~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R---~~~~~~~~~g~IYvi----GG~~-~~~~~~sve~Y 372 (557)
T PHA02713 301 IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR---CRFSLAVIDDTIYAI----GGQN-GTNVERTIECY 372 (557)
T ss_pred EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh---hceeEEEECCEEEEE----CCcC-CCCCCceEEEE
Confidence 3347777777653 345667765543 333332211 111223446776666 4444 22223456677
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC-----------------------eEEEEeCCCCe--EE
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-----------------------IYKVFDLKNYT--ML 136 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~-----------------------tiklWdl~~g~--~l 136 (389)
|..+.+.....++-. .......+++ +|++.+.|+.++ ++..+|..+.+ .+
T Consensus 373 dp~~~~W~~~~~mp~--~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v 447 (557)
T PHA02713 373 TMGDDKWKMLPDMPI--ALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447 (557)
T ss_pred ECCCCeEEECCCCCc--ccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence 766554421111110 1111122443 689999998763 46667766654 22
Q ss_pred EEecCCcEE-EEEEcCCceEEEEecCCC---CeeEEEEEcCC-C--eEEEEEeecCCceeEEEEEecCCCeEEEEeCCC-
Q 016446 137 YSISDKHVQ-EIKISPGIMLLIFNRSSS---HVPLKILSIED-G--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE- 208 (389)
Q Consensus 137 ~tl~~~~V~-~vafS~g~~la~~~~~s~---d~tiklWd~~t-G--~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~- 208 (389)
..+...... +++.-+|.+.+.++.++. ...+..+|.++ . +.+..++..... ..++. .++...++|+.|+
T Consensus 448 ~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-~~~~~--~~~~iyv~Gg~~~~ 524 (557)
T PHA02713 448 PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-LHTIL--HDNTIMMLHCYESY 524 (557)
T ss_pred CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-ceeEE--ECCEEEEEeeecce
Confidence 222222221 233335666666543211 13567899886 3 444555422111 22222 3456666688887
Q ss_pred -cEEEEECCCCeEEEEcccCC
Q 016446 209 -NLQILDVRNAELMEVSRTEF 228 (389)
Q Consensus 209 -tIklWd~~tg~~~~~l~gh~ 228 (389)
++..+|+.+.+-...-..|.
T Consensus 525 ~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 525 MLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred eehhhcCcccccccchhhhcC
Confidence 88888888877655544554
No 409
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.49 E-value=4.2 Score=42.20 Aligned_cols=90 Identities=13% Similarity=0.039 Sum_probs=63.1
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECC----------------
Q 016446 222 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS---------------- 283 (389)
Q Consensus 222 ~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSp---------------- 283 (389)
..|....-.+.+++.+|++++.|... =|-|-|+|+. +..++-++|=-+.. |. |--...+
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~-wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CG-WIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EE-EEEeecccccccccccccCCCCc
Confidence 34555556788999999999888875 6789999996 88888777643321 10 1111111
Q ss_pred CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 284 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 284 dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
-..+||-+.. ..|.|.||++++|..+..++-
T Consensus 378 ~~l~LvIyap----------rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 378 FALFLVIYAP----------RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ceEEEEEEec----------cCCeEEEEecCCCCEEEEEEe
Confidence 1357777754 469999999999999998864
No 410
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.13 E-value=54 Score=37.53 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=104.3
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEE---EeeC-CCEEEEEEE-eecCCCcceeeeeeeEeEecc-CCCCCcceeEee
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLF---YNKN-NDSLITVSV-YASDNFSSLKCRSTKIEYIRR-GKPDSGFALFES 97 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~---~spd-g~~l~s~s~-~~~~d~~~l~~~~~~l~~i~~-g~~~~~~~l~~~ 97 (389)
-++++|..|=+.++...+...+.+.|+- |--| +.+++.+-+ .-++. .-.+...+-+..... +++ +.+-.+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde-~ep~~GRIivfe~~e~~~L---~~v~e~ 826 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDE-NEPVNGRIIVFEFEELNSL---ELVAET 826 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCC-CCcccceEEEEEEecCCce---eeeeee
Confidence 4778888887877776666556666555 7777 555555322 11222 222333333333333 222 223334
Q ss_pred ecccCcee-EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcC
Q 016446 98 ESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 98 ~~~~~~~~-v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~ 173 (389)
...|.|.+ +.| ||++|| +-...|||+++.+.+.++.-. ...+..+... .|..+|++..=. .-|+--++-.
T Consensus 827 ~v~Gav~aL~~f---ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~-Sitll~y~~~ 900 (1096)
T KOG1897|consen 827 VVKGAVYALVEF---NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMR-SITLLQYKGD 900 (1096)
T ss_pred eeccceeehhhh---CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccc-eEEEEEEecc
Confidence 45566666 466 699998 567899999998886655443 4678888888 788888873221 1233334444
Q ss_pred CCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 016446 174 DGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 215 (389)
Q Consensus 174 tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~ 215 (389)
.|+..-.-+ .+..+..++++. +++.++-+-.++.+.+--.
T Consensus 901 eg~f~evArD~~p~Wmtaveil--~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 901 EGNFEEVARDYNPNWMTAVEIL--DDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred CCceEEeehhhCccceeeEEEe--cCceEEeecccccEEEEEe
Confidence 454544433 233344555554 4666666667777766533
No 411
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.32 E-value=42 Score=35.34 Aligned_cols=149 Identities=16% Similarity=0.105 Sum_probs=75.8
Q ss_pred CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE--cccCC-CceEEEEEcCCC
Q 016446 164 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRTEF-MTPSAFIFLYEN 240 (389)
Q Consensus 164 d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~--l~gh~-~~v~sv~fspdg 240 (389)
...+.+-| .+|.....+.....+...+.+. .++.+++++. ..++..|+ .|+.+.. +.+.. ..=..+.+.|+|
T Consensus 127 ~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l--~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 127 SSYTYLID-NNGDVRWYLPLDSGSDNSFKQL--PNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEEE-TTS-EEEEE-GGGT--SSEEE---TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CceEEEEC-CCccEEEEEccCccccceeeEc--CCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCC
Confidence 46778889 5789988887433333333443 3566666554 88888888 4665433 33310 001236688999
Q ss_pred cEEEEEc--------------CCeEEEEeCCCcEEEEe--ccCcCCcCC--------------------CCeeEEEECC-
Q 016446 241 QLFLTFR--------------NRTVAVWNFRGELVTSF--EDHLLWHPD--------------------CNTNNIYITS- 283 (389)
Q Consensus 241 ~~laS~s--------------D~tIklWd~~G~~l~tl--~gh~~~~~~--------------------~~v~sv~fSp- 283 (389)
++|+.+. .-.|-..|.+|+.+..+ ..|-.+.+. .=+++|.+.|
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred CEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 9888655 12233444347665542 233211110 1278999988
Q ss_pred CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCC
Q 016446 284 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 328 (389)
Q Consensus 284 dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~ 328 (389)
|+.+|+|+ +. -..|-..|-.+|+....|-.|.+.
T Consensus 282 dd~iivSs-R~----------~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 282 DDSIIVSS-RH----------QSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp TTEEEEEE-TT----------T-EEEEEE-TTS-EEEEES-STT-
T ss_pred CCeEEEEc-Cc----------ceEEEEEECCCCcEEEEeCCCCCC
Confidence 77777774 32 147878888899999999888743
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.04 E-value=30 Score=33.63 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=77.8
Q ss_pred ceeeeeeecCCcceEE-------EEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE--eccCCCCCcceeEeee---cc
Q 016446 33 NRRICFLNVSPDEVIR-------SLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY--IRRGKPDSGFALFESE---SL 100 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~-------sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~--i~~g~~~~~~~l~~~~---~~ 100 (389)
|.+-.-+-+|+-+.|+ .++|+.|-++.-.. -+.+ ..+.-|| .++|.+.+...+|... .+
T Consensus 139 g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~i---Dsln------~~V~a~dyd~~tG~~snr~~i~dlrk~~~~ 209 (310)
T KOG4499|consen 139 GELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYI---DSLN------YEVDAYDYDCPTGDLSNRKVIFDLRKSQPF 209 (310)
T ss_pred cEEEEeccCCCceeeehhccCCccccccccCcEEEEE---ccCc------eEEeeeecCCCcccccCcceeEEeccCCCc
Confidence 3333334455544444 56777666643331 1234 5665576 6899887666677622 22
Q ss_pred cC--ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-C--CceEEEEecCCCCeeEEE
Q 016446 101 KW--PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-P--GIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 101 ~~--~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~--g~~la~~~~~s~d~tikl 169 (389)
.+ |...+.+ .+|.+.+..=.-++|.--|+.+|+.+.++. ...|.+++|- + +-+..++ ....|.++++
T Consensus 210 e~~~PDGm~ID-~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~-aa~~~dp~~~ 283 (310)
T KOG4499|consen 210 ESLEPDGMTID-TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT-AAKFDDPVRT 283 (310)
T ss_pred CCCCCCcceEc-cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe-hhcccCchhc
Confidence 22 4446665 577777766677899999999999887765 7899999999 6 3333333 3334445544
No 413
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.69 E-value=1.4 Score=46.82 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=31.1
Q ss_pred eeEEEECC----CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 276 TNNIYITS----DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 276 v~sv~fSp----dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
+.++++++ +..+|++-|.| +++|+||+.+++|++++.-.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D-----------~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRD-----------HTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETT-----------SEEEEEETTTTCEEEEEETT
T ss_pred cceEEEecceeCCCCEEEEEeCC-----------CeEEEEECCCCeEEEEeccc
Confidence 56778888 88999998875 89999999999998886443
No 414
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.34 E-value=31 Score=32.90 Aligned_cols=184 Identities=10% Similarity=0.034 Sum_probs=98.0
Q ss_pred EEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe---cCCCeE-EEEeCCCcEEEEECCCCeEEE
Q 016446 147 IKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE---QFNEKL-LVKQENENLQILDVRNAELME 222 (389)
Q Consensus 147 vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~---~~~~~l-~~~s~D~tIklWd~~tg~~~~ 222 (389)
+.+-+|.++.++..-+ -..||.||+.+|+.+..-+-.. .-.|-+ .-++++ +-.=.|+.--.+|..+-+++.
T Consensus 51 L~~~~g~i~esTG~yg-~S~ir~~~L~~gq~~~s~~l~~----~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 51 LEYLDGHILESTGLYG-FSKIRVSDLTTGQEIFSEKLAP----DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred eeeeCCEEEEeccccc-cceeEEEeccCceEEEEeecCC----ccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Confidence 3333454444332222 2479999999999987654210 111110 001111 123367788888888888776
Q ss_pred Ec--ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-----CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 223 VS--RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 223 ~l--~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-----G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
.+ +|.. |.+ -.|++.|..+. ..|++.-|.. ++...|++|-. + ..++.+.+ -||...|--=.+
T Consensus 126 ~~~y~GeG---WgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p--v--~~LNELE~-VdG~lyANVw~t 195 (262)
T COG3823 126 RFSYEGEG---WGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP--V--SKLNELEW-VDGELYANVWQT 195 (262)
T ss_pred ccccCCcc---eee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee--c--ccccceee-eccEEEEeeeee
Confidence 54 3332 333 34455555554 6677777642 34455555432 1 11333332 267666643322
Q ss_pred CCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-C
Q 016446 295 EPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-N 373 (389)
Q Consensus 295 ~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~ 373 (389)
..|---|..+|+.++.+.-.. -....+.++.+++..+.+||.|++ +
T Consensus 196 -----------~~I~rI~p~sGrV~~widlS~----------------------L~~~~~~~~~~~nvlNGIA~~~~~~r 242 (262)
T COG3823 196 -----------TRIARIDPDSGRVVAWIDLSG----------------------LLKELNLDKSNDNVLNGIAHDPQQDR 242 (262)
T ss_pred -----------cceEEEcCCCCcEEEEEEccC----------------------CchhcCccccccccccceeecCcCCe
Confidence 344455777888877765432 111222334445678889999999 6
Q ss_pred EEEEe
Q 016446 374 EIYTG 378 (389)
Q Consensus 374 ~LaSg 378 (389)
.+++|
T Consensus 243 ~~iTG 247 (262)
T COG3823 243 FLITG 247 (262)
T ss_pred EEEec
Confidence 66666
No 415
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.17 E-value=14 Score=35.16 Aligned_cols=117 Identities=8% Similarity=0.049 Sum_probs=70.3
Q ss_pred CCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeE----EEEEeecCCce---eEEE
Q 016446 121 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV----LKVFYHLLHRN---KKVD 192 (389)
Q Consensus 121 ~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~----l~tl~~~~~~~---~~v~ 192 (389)
.||..-..|..+.+++..++ .+.=|.++- |+..|..+. ++ .+++.-|.+|=.. ..++.+ .+| +++.
T Consensus 109 ~egvaf~~d~~t~~~lg~~~y~GeGWgLt~-d~~~Limsd-Gs--atL~frdP~tfa~~~~v~VT~~g--~pv~~LNELE 182 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFSYEGEGWGLTS-DDKNLIMSD-GS--ATLQFRDPKTFAELDTVQVTDDG--VPVSKLNELE 182 (262)
T ss_pred ccceeEEEChHHhhhhcccccCCcceeeec-CCcceEeeC-Cc--eEEEecCHHHhhhcceEEEEECC--eeccccccee
Confidence 35566667777777776665 445566654 444444432 21 4777777665333 334432 333 6666
Q ss_pred EEecCCCeEEE-EeCCCcEEEEECCCCeEEEEc------------ccCCCceEEEEEcCCC-cEEEEE
Q 016446 193 FIEQFNEKLLV-KQENENLQILDVRNAELMEVS------------RTEFMTPSAFIFLYEN-QLFLTF 246 (389)
Q Consensus 193 f~~~~~~~l~~-~s~D~tIklWd~~tg~~~~~l------------~gh~~~v~sv~fspdg-~~laS~ 246 (389)
+. ++.+.+ -=.+-.|-.-|.++|+.+... ..|.+-.+.+|+-|++ +++++|
T Consensus 183 ~V---dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 183 WV---DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ee---ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 65 344444 335666666788888876553 3466678889999988 777776
No 416
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.97 E-value=2.5 Score=28.08 Aligned_cols=29 Identities=3% Similarity=0.006 Sum_probs=20.2
Q ss_pred cCCCceEEEEEcCCCcEEEEEc--C--CeEEEE
Q 016446 226 TEFMTPSAFIFLYENQLFLTFR--N--RTVAVW 254 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~s--D--~tIklW 254 (389)
.....-...+|||||+.|+-.+ + |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667789999999998775 6 666666
No 417
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=85.85 E-value=23 Score=38.76 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=64.5
Q ss_pred eeEEEEEcCCCeEEEEEe-ecCCceeEEEEE-ecCCCeEEEEeCCCcEEEEECC-----CC----eEEEE--cccCC-Cc
Q 016446 165 VPLKILSIEDGTVLKVFY-HLLHRNKKVDFI-EQFNEKLLVKQENENLQILDVR-----NA----ELMEV--SRTEF-MT 230 (389)
Q Consensus 165 ~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~-~~~~~~l~~~s~D~tIklWd~~-----tg----~~~~~--l~gh~-~~ 230 (389)
.++.|||...|.+...-. ...+.|..+.|. .|+++.+++-+..+.|.|+--. .. ..++. +..|+ .+
T Consensus 51 ~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~ 130 (631)
T PF12234_consen 51 SELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHP 130 (631)
T ss_pred CEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCC
Confidence 689999999999776544 234788888884 5678899999999999998532 11 12222 24454 57
Q ss_pred eEEEEEcCCCcEEEEEcCCeEEEEeC
Q 016446 231 PSAFIFLYENQLFLTFRNRTVAVWNF 256 (389)
Q Consensus 231 v~sv~fspdg~~laS~sD~tIklWd~ 256 (389)
|...+|.+||.+++.+ ++.+-|.|-
T Consensus 131 Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 131 IGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred ccceeEecCCeEEEEe-CCEEEEECC
Confidence 8999999999877644 555666664
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=85.66 E-value=22 Score=38.98 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=66.0
Q ss_pred CeEEE-EeCCCcEEEEECCCCeEEE--EcccCCCceEEEEE--cCCCcEEEEEc-CCeEEEEeC------C-C---cEEE
Q 016446 199 EKLLV-KQENENLQILDVRNAELME--VSRTEFMTPSAFIF--LYENQLFLTFR-NRTVAVWNF------R-G---ELVT 262 (389)
Q Consensus 199 ~~l~~-~s~D~tIklWd~~tg~~~~--~l~gh~~~v~sv~f--spdg~~laS~s-D~tIklWd~------~-G---~~l~ 262 (389)
++++. .+...++.|||.+.+.+.. .+ .+.+.|..+.| .||||.+++-+ .+.|.|+-- + + ..++
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence 44444 3466889999999988633 33 34567888876 69999999999 999999852 1 1 2233
Q ss_pred E--eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 263 S--FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 263 t--l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
. +..|.. ++ |.+..+-+||.+++.++ +.+.|.|
T Consensus 120 ~i~i~~~T~-h~---Igds~Wl~~G~LvV~sG-------------Nqlfv~d 154 (631)
T PF12234_consen 120 KIDISSHTP-HP---IGDSIWLKDGTLVVGSG-------------NQLFVFD 154 (631)
T ss_pred EEEeecCCC-CC---ccceeEecCCeEEEEeC-------------CEEEEEC
Confidence 2 234442 22 67899999999888653 4677776
No 419
>PHA02713 hypothetical protein; Provisional
Probab=85.12 E-value=59 Score=34.94 Aligned_cols=216 Identities=8% Similarity=0.050 Sum_probs=106.7
Q ss_pred eEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeeccc
Q 016446 24 VCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 101 (389)
Q Consensus 24 tiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~ 101 (389)
.+..||..+++ .+..++.... . .+++. -+|...+. |+.+...-....+..+|..+.+.....++- ....
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~-~~~a~-l~~~IYvi----GG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~--~~R~ 343 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-N-YASAI-VDNEIIIA----GGYNFNNPSLNKVYKINIENKIHVELPPMI--KNRC 343 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-c-eEEEE-ECCEEEEE----cCCCCCCCccceEEEEECCCCeEeeCCCCc--chhh
Confidence 56678876554 3333433221 1 22222 36665555 444322222345556666555431111111 0111
Q ss_pred CceeEEEecCCCeEEEEecCCC-----eEEEEeCCCCe--EEEEecCC-cEEEEEEcCCceEEEEecCCC----------
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDS-----IYKVFDLKNYT--MLYSISDK-HVQEIKISPGIMLLIFNRSSS---------- 163 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~-----tiklWdl~~g~--~l~tl~~~-~V~~vafS~g~~la~~~~~s~---------- 163 (389)
.. +++- -+|++.|.|+.++ ++..||..+.+ .+..++.. .-.+++.-+|...+.++.++.
T Consensus 344 ~~-~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~ 420 (557)
T PHA02713 344 RF-SLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMN 420 (557)
T ss_pred ce-eEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccc
Confidence 11 2333 3689999998764 47889987665 22222211 111222236666666643321
Q ss_pred ----------CeeEEEEEcCCCeE--EEEEeecCCce-eEEEEEecCCCeEEEEeCC------CcEEEEECCC-CeE--E
Q 016446 164 ----------HVPLKILSIEDGTV--LKVFYHLLHRN-KKVDFIEQFNEKLLVKQEN------ENLQILDVRN-AEL--M 221 (389)
Q Consensus 164 ----------d~tiklWd~~tG~~--l~tl~~~~~~~-~~v~f~~~~~~~l~~~s~D------~tIklWd~~t-g~~--~ 221 (389)
-.++..+|.++.+= +..+. ..+. ..++. .++...+.|+.+ ..+..+|.++ .+- +
T Consensus 421 ~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~ 496 (557)
T PHA02713 421 SIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI 496 (557)
T ss_pred cccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc
Confidence 13577788777543 22222 1222 22332 234455557643 3467899887 443 2
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEc-CC--eEEEEeCC
Q 016446 222 EVSRTEFMTPSAFIFLYENQLFLTFR-NR--TVAVWNFR 257 (389)
Q Consensus 222 ~~l~gh~~~v~sv~fspdg~~laS~s-D~--tIklWd~~ 257 (389)
..+.........+++ +|++.+.|+ |+ ++..+|..
T Consensus 497 ~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 497 TTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred cccCcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 333333333344444 889999988 87 78788875
No 420
>PHA03098 kelch-like protein; Provisional
Probab=84.14 E-value=60 Score=34.20 Aligned_cols=192 Identities=9% Similarity=-0.005 Sum_probs=93.7
Q ss_pred CCeEEEEecCCC------eEEEEeCCCCeEEE--EecCC-cEEEEEEcCCceEEEEecCCC--CeeEEEEEcCCCeEEE-
Q 016446 112 NGKVLTYSAQDS------IYKVFDLKNYTMLY--SISDK-HVQEIKISPGIMLLIFNRSSS--HVPLKILSIEDGTVLK- 179 (389)
Q Consensus 112 dG~~Las~s~D~------tiklWdl~~g~~l~--tl~~~-~V~~vafS~g~~la~~~~~s~--d~tiklWd~~tG~~l~- 179 (389)
++.+.+.|+.++ .+..+|..+.+-.. .+... .-.+++.-+|...+.++.... -.++..||..+++-..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 577888887643 46677776666321 11111 112222236666666643311 1357778887755322
Q ss_pred -EEeecCCce-eEEEEEecCCCeEEEEeC--C----CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CC-
Q 016446 180 -VFYHLLHRN-KKVDFIEQFNEKLLVKQE--N----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR- 249 (389)
Q Consensus 180 -tl~~~~~~~-~~v~f~~~~~~~l~~~s~--D----~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~- 249 (389)
.++ ..+. ..++. .++...+.|+. + ..+..||..+++-...-.-....-...+...++++.+.|+ +.
T Consensus 374 ~~lp--~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 374 PPLI--FPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred CCcC--cCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence 222 1111 22222 23445555662 2 4688999988765432110000001122345677777775 32
Q ss_pred -------eEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 250 -------TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 250 -------tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
.+..+|.....-..+..-..+. .....+.+ +|++.+.|+.+. ....++|...|..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r--~~~~~~~~--~~~iyv~GG~~~------~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPR--INASLCIF--NNKIYVVGGDKY------EYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCccc--ccceEEEE--CCEEEEEcCCcC------CcccceeEEEeCCCCE
Confidence 3778887522222222111110 01122333 888888887541 1113578899987664
No 421
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.93 E-value=4.3 Score=26.95 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=15.0
Q ss_pred eeEEEECCCCCEEEEEecC
Q 016446 276 TNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D 294 (389)
-...+|||||++|+-.+.-
T Consensus 11 ~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEEEE-TTSSEEEEEEEC
T ss_pred ccCEEEecCCCEEEEEecC
Confidence 4788999999999987753
No 422
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.93 E-value=61 Score=34.14 Aligned_cols=150 Identities=13% Similarity=0.140 Sum_probs=73.4
Q ss_pred CCeEEEEe---cCCCeEEEEeCCCCeEEEEecCCcEEE--EEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecC
Q 016446 112 NGKVLTYS---AQDSIYKVFDLKNYTMLYSISDKHVQE--IKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 185 (389)
Q Consensus 112 dG~~Las~---s~D~tiklWdl~~g~~l~tl~~~~V~~--vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~ 185 (389)
+|=++++. ......-+-|. +|.....+....... +.+- +|.+++.. . ..++..|+ .|+.+.....-.
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~-~----~~~~e~D~-~G~v~~~~~l~~ 186 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGS-G----NRLYEIDL-LGKVIWEYDLPG 186 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEE-B----TEEEEE-T-T--EEEEEE--T
T ss_pred CcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEec-C----CceEEEcC-CCCEEEeeecCC
Confidence 34455554 23444555563 566555554322222 4444 46555433 2 57888896 588776654222
Q ss_pred Cc---eeEEEEEecCCCeEEEEe--------------CCCcEEEEECCCCeEEEEc--ccCC------------------
Q 016446 186 HR---NKKVDFIEQFNEKLLVKQ--------------ENENLQILDVRNAELMEVS--RTEF------------------ 228 (389)
Q Consensus 186 ~~---~~~v~f~~~~~~~l~~~s--------------~D~tIklWd~~tg~~~~~l--~gh~------------------ 228 (389)
+. -.++... |.|..|+.+. +|. |-..| ++|+.+..+ ..|-
T Consensus 187 ~~~~~HHD~~~l-~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~ 263 (477)
T PF05935_consen 187 GYYDFHHDIDEL-PNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISG 263 (477)
T ss_dssp TEE-B-S-EEE--TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-
T ss_pred cccccccccEEC-CCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCccccccccccccccccc
Confidence 11 1345554 5555655554 333 55556 677765542 2221
Q ss_pred -------CceEEEEEcC-CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCc
Q 016446 229 -------MTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH 271 (389)
Q Consensus 229 -------~~v~sv~fsp-dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~ 271 (389)
.+++++.+.| ++.+|+|+. -.+|-.-|.. |++.-.|-.|..|.
T Consensus 264 ~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~ 316 (477)
T PF05935_consen 264 SGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWN 316 (477)
T ss_dssp SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--
T ss_pred CCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCC
Confidence 3688999988 899999998 5577777854 99998998887663
No 423
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.20 E-value=15 Score=35.41 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=72.1
Q ss_pred EEeCCCCeEE-EEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC--CeEE-E----EEeecCCce-eEEEEEe
Q 016446 127 VFDLKNYTML-YSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED--GTVL-K----VFYHLLHRN-KKVDFIE 195 (389)
Q Consensus 127 lWdl~~g~~l-~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t--G~~l-~----tl~~~~~~~-~~v~f~~ 195 (389)
+||+.+++.. .... .-...+=+|- +|.+|.++........||+++..+ +.|- . .|. ..+. .++.-.
T Consensus 50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~--~~RWYpT~~~L- 126 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ--SGRWYPTATTL- 126 (243)
T ss_pred EEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc--CCCccccceEC-
Confidence 6776665521 1111 1222223333 677776665444456788887543 1121 1 122 2344 333333
Q ss_pred cCCCeEEEEe-CCCcEEEEECCC-C-eE--EEEcc----cCCCceE-EEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEe
Q 016446 196 QFNEKLLVKQ-ENENLQILDVRN-A-EL--MEVSR----TEFMTPS-AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 196 ~~~~~l~~~s-~D~tIklWd~~t-g-~~--~~~l~----gh~~~v~-sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl 264 (389)
+||+.|++|+ ..-+...|.-+. + .. +..+. ......+ -+...|||++|+.+..+.+ |+|.. ++.+++|
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~-i~d~~~n~v~~~l 205 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI-IYDYKTNTVVRTL 205 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE-EEeCCCCeEEeeC
Confidence 7888888876 455677777532 1 11 11221 1112222 2445899999998886666 78987 6666776
Q ss_pred c
Q 016446 265 E 265 (389)
Q Consensus 265 ~ 265 (389)
.
T Consensus 206 P 206 (243)
T PF07250_consen 206 P 206 (243)
T ss_pred C
Confidence 5
No 424
>PHA03098 kelch-like protein; Provisional
Probab=82.81 E-value=67 Score=33.80 Aligned_cols=144 Identities=8% Similarity=0.045 Sum_probs=74.2
Q ss_pred CCeEEEEecCC-----CeEEEEeCCCCeEE--EEecCC-cEEEEEEcCCceEEEEecCCCC---eeEEEEEcCCCeEEE-
Q 016446 112 NGKVLTYSAQD-----SIYKVFDLKNYTML--YSISDK-HVQEIKISPGIMLLIFNRSSSH---VPLKILSIEDGTVLK- 179 (389)
Q Consensus 112 dG~~Las~s~D-----~tiklWdl~~g~~l--~tl~~~-~V~~vafS~g~~la~~~~~s~d---~tiklWd~~tG~~l~- 179 (389)
+|++.+.|+.+ .++..||..+.+-. ..++.. .-.+++.-+|...+.++....+ ..+..+|+.+++-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 68888888876 35667887665521 122211 1122333366666665432222 467888988755322
Q ss_pred -EEeecCCce-eEEEEEecCCCeEEEEeCC--------CcEEEEECCCCeEEEEccc--CCCceEEEEEcCCCcEEEEEc
Q 016446 180 -VFYHLLHRN-KKVDFIEQFNEKLLVKQEN--------ENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 180 -tl~~~~~~~-~~v~f~~~~~~~l~~~s~D--------~tIklWd~~tg~~~~~l~g--h~~~v~sv~fspdg~~laS~s 247 (389)
.++. .+. ..+.. .++...+.|+.+ ..+.++|.++++-.....- .......++ .++++++-|+
T Consensus 422 ~~~p~--~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG 495 (534)
T PHA03098 422 SPLPI--SHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGG 495 (534)
T ss_pred CCCCc--cccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcC
Confidence 1210 111 11222 234444556532 2388999988775443211 111112222 3788888776
Q ss_pred -C-----CeEEEEeCCCcEE
Q 016446 248 -N-----RTVAVWNFRGELV 261 (389)
Q Consensus 248 -D-----~tIklWd~~G~~l 261 (389)
+ ++|..+|.....-
T Consensus 496 ~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 496 DKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CcCCcccceeEEEeCCCCEE
Confidence 4 4778888764433
No 425
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=82.57 E-value=24 Score=35.44 Aligned_cols=90 Identities=9% Similarity=0.108 Sum_probs=59.8
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCC-C---------------
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSS-H--------------- 164 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~-d--------------- 164 (389)
.|.+-.|. ||++-++-+..|++.-+|.++|+...... .+..+.++|- |.++.++.+.-. +
T Consensus 204 mPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~-G~llvVgmSk~R~~~~f~glpl~~~l~~~ 280 (335)
T TIGR03032 204 MPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA-GDFAFVGLSKLRESRVFGGLPIEERLDAL 280 (335)
T ss_pred CCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee-CCEEEEEeccccCCCCcCCCchhhhhhhh
Confidence 34455563 79999999999999999998887433332 3456677777 666655544322 1
Q ss_pred -eeEEEEEcCCCeEEEEEee--cCCceeEEEEE
Q 016446 165 -VPLKILSIEDGTVLKVFYH--LLHRNKKVDFI 194 (389)
Q Consensus 165 -~tiklWd~~tG~~l~tl~~--~~~~~~~v~f~ 194 (389)
.-|.+-|+.||..+..|+. --..++.|+..
T Consensus 281 ~CGv~vidl~tG~vv~~l~feg~v~EifdV~vL 313 (335)
T TIGR03032 281 GCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVL 313 (335)
T ss_pred cccEEEEECCCCCEEEEEEeCCceeEEEEEEEe
Confidence 2467779999999988763 22344666665
No 426
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.53 E-value=5.5 Score=26.43 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=28.1
Q ss_pred CCCe-EEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc
Q 016446 111 VNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS 150 (389)
Q Consensus 111 pdG~-~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS 150 (389)
|||+ +.++.-.+++|-+.|+++++.+..+. +..=+.++||
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 4555 55556678999999999999887776 4444455554
No 427
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.22 E-value=7.1 Score=41.43 Aligned_cols=38 Identities=11% Similarity=0.449 Sum_probs=27.6
Q ss_pred CceEEEEEcC----CCcEEEEEc-CCeEEEEeCC-CcEEEEecc
Q 016446 229 MTPSAFIFLY----ENQLFLTFR-NRTVAVWNFR-GELVTSFED 266 (389)
Q Consensus 229 ~~v~sv~fsp----dg~~laS~s-D~tIklWd~~-G~~l~tl~g 266 (389)
..+.+++..+ +..+|++-+ |+++|+||+. ++|+.+..-
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 3456667766 778888888 9999999997 999777643
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.01 E-value=7.9 Score=36.52 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=47.6
Q ss_pred EEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccc
Q 016446 278 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 357 (389)
Q Consensus 278 sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
.+.+..+|++|+.-.. +|.+++||+.+++++..-. +-.| + ...... ...
T Consensus 15 ~~~l~~~~~~Ll~iT~-----------~G~l~vWnl~~~k~~~~~~--Si~p---l-l~~~~~------------~~~-- 63 (219)
T PF07569_consen 15 VSFLECNGSYLLAITS-----------SGLLYVWNLKKGKAVLPPV--SIAP---L-LNSSPV------------SDK-- 63 (219)
T ss_pred eEEEEeCCCEEEEEeC-----------CCeEEEEECCCCeeccCCc--cHHH---H-hccccc------------ccC--
Confidence 3446678999887665 5999999999999853320 1000 0 000000 000
Q ss_pred cccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 358 EALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 358 ~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.....|.++.++++|.-|++=+. |..-.|+
T Consensus 64 ~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~ 93 (219)
T PF07569_consen 64 SSSPNITSCSLTSNGVPIVTLSN-GDSYSYS 93 (219)
T ss_pred CCCCcEEEEEEcCCCCEEEEEeC-CCEEEec
Confidence 12258999999999998888764 4555554
No 429
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.71 E-value=6.2 Score=26.18 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=29.3
Q ss_pred cCCCeEEEEe-CCCcEEEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 196 QFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 196 ~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
|+++++.++. .+++|-++|..+++.+..+.- ....+.++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 3566666654 789999999999998887665 2445566553
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.71 E-value=25 Score=39.02 Aligned_cols=144 Identities=18% Similarity=0.277 Sum_probs=85.0
Q ss_pred eeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc----ccCCCceEEEEEcCCC
Q 016446 165 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS----RTEFMTPSAFIFLYEN 240 (389)
Q Consensus 165 ~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l----~gh~~~v~sv~fspdg 240 (389)
..|+++++ +|++|.++.-..+..-...|+ +++.|+.-+.||++.++++ .|+.++.. +-....|..+.|...|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~-~ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGL-LGEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeec-chhhhcccccccccccCceeEEEEecCc
Confidence 56999995 789998776221334444443 4789999999999999998 56554431 1122235555555555
Q ss_pred cEEEEEcCCeE--------EEEeC-C--C-----cEEEEecc----------------------------CcCCcCCCCe
Q 016446 241 QLFLTFRNRTV--------AVWNF-R--G-----ELVTSFED----------------------------HLLWHPDCNT 276 (389)
Q Consensus 241 ~~laS~sD~tI--------klWd~-~--G-----~~l~tl~g----------------------------h~~~~~~~~v 276 (389)
-.+.+.++.-+ ++|.. + + .|...+.. |...-+...+
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~ 219 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV 219 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence 44444443333 34432 0 0 12211211 1111111235
Q ss_pred eEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 277 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 277 ~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
--+.+||+.++||-...+ |.|.+=++...+++-+++
T Consensus 220 ~ki~VS~n~~~laLyt~~-----------G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 220 VKISVSPNRRFLALYTET-----------GKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEcCCcceEEEEecC-----------CcEEEEecchhhhhhccC
Confidence 678899999999998654 788777777777766655
No 431
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=81.64 E-value=31 Score=36.20 Aligned_cols=180 Identities=7% Similarity=0.046 Sum_probs=79.7
Q ss_pred CCCeEEEEec--C----CCeEEEEeCCCCeEEEEecC---C--cEEEEEEcCC-ceEEEEecC-----------------
Q 016446 111 VNGKVLTYSA--Q----DSIYKVFDLKNYTMLYSISD---K--HVQEIKISPG-IMLLIFNRS----------------- 161 (389)
Q Consensus 111 pdG~~Las~s--~----D~tiklWdl~~g~~l~tl~~---~--~V~~vafS~g-~~la~~~~~----------------- 161 (389)
|+|++++|+= . -|-+-+-|-++-+.+..... . .-.++-+.|. +.+++++.+
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 7888887752 1 23455556555555544431 1 2234444453 333343322
Q ss_pred CCCeeEEEEEcCCCeEEEEEee-cCC-ceeEEEEEecCCC---eEEEEeCCCcEEEEEC-CCCe-----EEEEcc----c
Q 016446 162 SSHVPLKILSIEDGTVLKVFYH-LLH-RNKKVDFIEQFNE---KLLVKQENENLQILDV-RNAE-----LMEVSR----T 226 (389)
Q Consensus 162 s~d~tiklWd~~tG~~l~tl~~-~~~-~~~~v~f~~~~~~---~l~~~s~D~tIklWd~-~tg~-----~~~~l~----g 226 (389)
.--+++.+||+++.+.++++.- -.+ ...+|.|. .++. -++.+.-..+|-+|=- +.|+ .+++.. +
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRfl-H~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFL-HDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE--SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEec-CCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 0125899999999999999982 222 34899997 3332 2222235555555533 3332 122211 1
Q ss_pred C------------CCceEEEEEcCCCcEEEEE-c-CCeEEEEeCC--C--cEEEEec-cCcC-----C-cCC----CCee
Q 016446 227 E------------FMTPSAFIFLYENQLFLTF-R-NRTVAVWNFR--G--ELVTSFE-DHLL-----W-HPD----CNTN 277 (389)
Q Consensus 227 h------------~~~v~sv~fspdg~~laS~-s-D~tIklWd~~--G--~~l~tl~-gh~~-----~-~~~----~~v~ 277 (389)
- ..-|..|..|.|.++|--+ . +|.||.+|++ - +++-... |-.- + +.. ....
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 1 2346888899988887666 4 9999999985 2 2332111 1000 0 000 0114
Q ss_pred EEEECCCCCEEEEE
Q 016446 278 NIYITSDQDLIISY 291 (389)
Q Consensus 278 sv~fSpdG~~laS~ 291 (389)
=|..|.||++|--.
T Consensus 378 MvqlS~DGkRlYvT 391 (461)
T PF05694_consen 378 MVQLSLDGKRLYVT 391 (461)
T ss_dssp -EEE-TTSSEEEEE
T ss_pred eEEEccCCeEEEEE
Confidence 57889999988654
No 432
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=81.63 E-value=98 Score=34.86 Aligned_cols=169 Identities=15% Similarity=0.110 Sum_probs=93.5
Q ss_pred CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCc--------eeEEEEEe---------------cCCCeEEEEeCCC
Q 016446 152 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR--------NKKVDFIE---------------QFNEKLLVKQENE 208 (389)
Q Consensus 152 g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~--------~~~v~f~~---------------~~~~~l~~~s~D~ 208 (389)
|++|..++. ++.|.=.|.+||+.+-++.-.... .+.|++-. ..++++..+..|+
T Consensus 194 gg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 555555533 357777899999999887632211 23344421 1235788888999
Q ss_pred cEEEEECCCCeEEEEcccCCCce-------------EEEEEcC---CCcEEEEEc----------CCeEEEEeCC-CcEE
Q 016446 209 NLQILDVRNAELMEVSRTEFMTP-------------SAFIFLY---ENQLFLTFR----------NRTVAVWNFR-GELV 261 (389)
Q Consensus 209 tIklWd~~tg~~~~~l~gh~~~v-------------~sv~fsp---dg~~laS~s----------D~tIklWd~~-G~~l 261 (389)
.+.-.|.+||+.+..+..+ ..| ..+.-+| ++.+++.++ +|.|+-.|+. |+++
T Consensus 271 ~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9999999999988765321 111 1122233 566666543 4789999996 9988
Q ss_pred EEecc-CcC---CcCC--------CCe-eEEEECCCCCEEEEEec-CCC---cccc---cCCCCCeEEEEeCCCCeEEEE
Q 016446 262 TSFED-HLL---WHPD--------CNT-NNIYITSDQDLIISYCK-AEP---EDQW---MEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 262 ~tl~g-h~~---~~~~--------~~v-~sv~fSpdG~~laS~s~-D~~---~~~~---~~s~D~tIklWd~~tg~~l~t 321 (389)
-.+.- +.. .... ..+ ...++.|+-.++.-+.. ..+ .... ..--.++|-=-|+.|||....
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 66541 100 0000 011 12344444333332211 000 0000 011236777889999999988
Q ss_pred ecC
Q 016446 322 INA 324 (389)
Q Consensus 322 l~g 324 (389)
++-
T Consensus 430 ~Q~ 432 (764)
T TIGR03074 430 FQT 432 (764)
T ss_pred ecc
Confidence 876
No 433
>PRK13684 Ycf48-like protein; Provisional
Probab=81.16 E-value=62 Score=32.29 Aligned_cols=141 Identities=11% Similarity=0.011 Sum_probs=77.9
Q ss_pred CcEEEEEEcC-CceEEEEecCCCCeeEE-EEEcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC
Q 016446 142 KHVQEIKISP-GIMLLIFNRSSSHVPLK-ILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 218 (389)
Q Consensus 142 ~~V~~vafS~-g~~la~~~~~s~d~tik-lWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg 218 (389)
..+.++++.| +..++++. . +.+. .+| ..|+.-.... .-...+..+.+. ++ +.+++.+..+.+++=.-..|
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~---G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~-~~-g~~~~vg~~G~~~~~s~d~G 245 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-R---GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQ-PD-GNLWMLARGGQIRFNDPDDL 245 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-C---ceEEEEcC-CCCCeEEEeeCCCcccceeeeEc-CC-CCEEEEecCCEEEEccCCCC
Confidence 4688999995 44555442 2 2332 222 2233333332 112445777776 43 44445556677754333344
Q ss_pred eEEEEccc----CCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 219 ELMEVSRT----EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 219 ~~~~~l~g----h~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
+--+...- -...+.+++|.|++++++.+.+|.|. .-.+ |+--+.+..+... + ...+.+.|-.+++.+|.|.
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~-~-~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEV-P-SNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCC-C-cceEEEEEeCCCceEEECC
Confidence 43221111 22357889999999998888888773 4555 6654444321111 1 1257888888889988864
No 434
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=81.02 E-value=69 Score=33.67 Aligned_cols=189 Identities=14% Similarity=0.105 Sum_probs=86.9
Q ss_pred CeEE-EEecCCCeEEEEeCC----CCeEEEEecC------------CcEEEEEEcCCceEEEEecCCC---CeeEEEEEc
Q 016446 113 GKVL-TYSAQDSIYKVFDLK----NYTMLYSISD------------KHVQEIKISPGIMLLIFNRSSS---HVPLKILSI 172 (389)
Q Consensus 113 G~~L-as~s~D~tiklWdl~----~g~~l~tl~~------------~~V~~vafS~g~~la~~~~~s~---d~tiklWd~ 172 (389)
.++| +.|=..+.|.+-|+. ..++..++.. +.+.++. +|++++++-.+.. -+-+-+.|-
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp--~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP--DGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S--S--EEEEEEEETTS-S--EEEEE-T
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC--CccEEEEeccCCCCCCCCcEEEEcC
Confidence 4444 455478899999987 2334455532 1222221 2556655433221 134566676
Q ss_pred CCCeEEEEEeecCC-ce--eEEEEEecCCCeEEEEe--------------------CCCcEEEEECCCCeEEEEcccC--
Q 016446 173 EDGTVLKVFYHLLH-RN--KKVDFIEQFNEKLLVKQ--------------------ENENLQILDVRNAELMEVSRTE-- 227 (389)
Q Consensus 173 ~tG~~l~tl~~~~~-~~--~~v~f~~~~~~~l~~~s--------------------~D~tIklWd~~tg~~~~~l~gh-- 227 (389)
+|-+.+..-+...+ .- +.+-+. |....+++++ ..+++.+||+.+++.+|++.=-
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~q-pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQ-PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TT--EEEE--SB-TT------EEEE-TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred ccccccceeccCCCCCCCCCCeEEc-CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 66666555442111 11 333343 3334555543 3589999999999999997432
Q ss_pred CCceEEEEEc--CCCcEEEEE-c-CCeEEEEeC-C-Cc----EEEEeccC--cCC---c--------CCCCeeEEEECCC
Q 016446 228 FMTPSAFIFL--YENQLFLTF-R-NRTVAVWNF-R-GE----LVTSFEDH--LLW---H--------PDCNTNNIYITSD 284 (389)
Q Consensus 228 ~~~v~sv~fs--pdg~~laS~-s-D~tIklWd~-~-G~----~l~tl~gh--~~~---~--------~~~~v~sv~fSpd 284 (389)
...+-.|.|. |+...=.++ . ..+|-+|-. + |+ -+-++..- ..| . +. -|.+|.+|.|
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~-LitDI~iSlD 322 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP-LITDILISLD 322 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-------EEE-TT
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC-ceEeEEEccC
Confidence 2356678885 445543333 3 666655544 3 43 22222211 111 0 11 2689999999
Q ss_pred CCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 285 QDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 285 G~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
.++|--.+.= +|.||-+||..
T Consensus 323 DrfLYvs~W~----------~GdvrqYDISD 343 (461)
T PF05694_consen 323 DRFLYVSNWL----------HGDVRQYDISD 343 (461)
T ss_dssp S-EEEEEETT----------TTEEEEEE-SS
T ss_pred CCEEEEEccc----------CCcEEEEecCC
Confidence 9999988874 59999999975
No 435
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=80.46 E-value=67 Score=32.27 Aligned_cols=168 Identities=13% Similarity=0.058 Sum_probs=93.6
Q ss_pred EEEEEEcCCceEEEEecCCCCeeEEEEEcC------CCeE-EEEEeec-----CCceeEEEEEec------C-----CCe
Q 016446 144 VQEIKISPGIMLLIFNRSSSHVPLKILSIE------DGTV-LKVFYHL-----LHRNKKVDFIEQ------F-----NEK 200 (389)
Q Consensus 144 V~~vafS~g~~la~~~~~s~d~tiklWd~~------tG~~-l~tl~~~-----~~~~~~v~f~~~------~-----~~~ 200 (389)
=|.|+|+|+..+-++. ..-++..|+|.. ..+. +-+++.. .....-+.|+.- . ...
T Consensus 25 ~WGia~~p~~~~WVad--ngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 25 AWGLSYRPGGPFWVAN--TGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cceeEecCCCCEEEec--CCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 4789999866665653 334688888875 2222 3333310 012244455411 1 123
Q ss_pred EEEEeCCCcEEEEECCCCeE---E--EEc-ccCCCceEE-EEEc--CCCcEEEEEc--CCeEEEEeCCCcEEEE---ecc
Q 016446 201 LLVKQENENLQILDVRNAEL---M--EVS-RTEFMTPSA-FIFL--YENQLFLTFR--NRTVAVWNFRGELVTS---FED 266 (389)
Q Consensus 201 l~~~s~D~tIklWd~~tg~~---~--~~l-~gh~~~v~s-v~fs--pdg~~laS~s--D~tIklWd~~G~~l~t---l~g 266 (389)
++..++||||-=|+..-+.. . ..+ ++-...|+. +|+- +.+.+|-.+. .++|.++|-+-..+.+ +.+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 56788999999998643332 1 112 122234432 4554 3355555554 8999999977333221 221
Q ss_pred CcCCcCCCCeeEEEECC------CCCEEEEEecCCCccc--ccCCCCCeEEEEeCCCCeEEEEe
Q 016446 267 HLLWHPDCNTNNIYITS------DQDLIISYCKAEPEDQ--WMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSp------dG~~laS~s~D~~~~~--~~~s~D~tIklWd~~tg~~l~tl 322 (389)
-.- -.-|.| .|++.+++-.-+++.+ +.+.--|.|.++| ..|++++.+
T Consensus 183 P~i--------PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd-~~G~l~~r~ 237 (336)
T TIGR03118 183 PAL--------PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFT-LNGQLLRRV 237 (336)
T ss_pred CCC--------CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEc-CCCcEEEEe
Confidence 110 112222 6888888876544333 5555558999999 469999988
No 436
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=79.99 E-value=9 Score=39.80 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=56.2
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCC------cEEEEEEcC---------------CceEEEEec
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------HVQEIKISP---------------GIMLLIFNR 160 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~------~V~~vafS~---------------g~~la~~~~ 160 (389)
+..++.-+ |+|++.|....=|-|-|+|+.++..++.+++. ||....-.+ ...|++-.
T Consensus 309 ~~~~i~~s-P~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya- 386 (415)
T PF14655_consen 309 EGESICLS-PSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA- 386 (415)
T ss_pred eEEEEEEC-CCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe-
Confidence 34457887 89999988878889999999999988888752 333222211 23455543
Q ss_pred CCCCeeEEEEEcCCCeEEEEEe
Q 016446 161 SSSHVPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~ 182 (389)
-..+.|.+|++++|..+..+.
T Consensus 387 -prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 -PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred -ccCCeEEEEecCCCCEEEEEE
Confidence 334789999999999998876
No 437
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.67 E-value=19 Score=36.87 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=24.4
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 361 EDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 361 ~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|.+|+..|..+.|++-+.+++|++|+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~ 217 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWD 217 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEE
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEE
Confidence 3599999999999999999999999997
No 438
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=78.19 E-value=76 Score=31.57 Aligned_cols=138 Identities=12% Similarity=0.040 Sum_probs=72.1
Q ss_pred CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe----EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEE-C
Q 016446 142 KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT----VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILD-V 215 (389)
Q Consensus 142 ~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~----~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd-~ 215 (389)
..+.++..+ +|.++|+++.+ .-.+-|| .|+ ..... -..++.++.|. |++...+ ....+.|+.=+ .
T Consensus 145 gs~~~~~r~~dG~~vavs~~G---~~~~s~~--~G~~~w~~~~r~--~~~riq~~gf~-~~~~lw~-~~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRG---NFYSSWD--PGQTTWQPHNRN--SSRRIQSMGFS-PDGNLWM-LARGGQIQFSDDP 215 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTS---SEEEEE---TT-SS-EEEE----SSS-EEEEEE--TTS-EEE-EETTTEEEEEE-T
T ss_pred ceeEeEEECCCCcEEEEECcc---cEEEEec--CCCccceEEccC--ccceehhceec-CCCCEEE-EeCCcEEEEccCC
Confidence 568888888 78888887544 3456677 343 22222 34778899998 5544444 44888888776 2
Q ss_pred CCCeEEEE----cccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEE
Q 016446 216 RNAELMEV----SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 290 (389)
Q Consensus 216 ~tg~~~~~----l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS 290 (389)
..++.-+. +......+..++|.|++++.|++..|++ +.-.+ |+--+.-+.-. .++ ..+..|.|.++.+-+|-
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~-~~~-~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGE-NVP-SNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGT-TSS-S---EEEEEETTEEEEE
T ss_pred CCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECcccc-CCC-CceEEEEEcCCCceEEE
Confidence 23332221 1122234788999999999999988876 55555 66433332201 111 12678888777777776
Q ss_pred E
Q 016446 291 Y 291 (389)
Q Consensus 291 ~ 291 (389)
|
T Consensus 293 G 293 (302)
T PF14870_consen 293 G 293 (302)
T ss_dssp -
T ss_pred C
Confidence 5
No 439
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.83 E-value=77 Score=31.44 Aligned_cols=100 Identities=7% Similarity=0.098 Sum_probs=59.4
Q ss_pred eEEEEEecCCCeEEEEeCC------CcEEEEECCCCeEEEEc---c------------cCCCceEEEEEcCCCcEEEEEc
Q 016446 189 KKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELMEVS---R------------TEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D------~tIklWd~~tg~~~~~l---~------------gh~~~v~sv~fspdg~~laS~s 247 (389)
.++++ ++++..+++.-.+ ..|.-.|.. |+.++.+ . ..+...++++++|||+.|.++-
T Consensus 88 Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 88 EGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 45666 3545555555566 788888876 6664443 1 2456789999999999554442
Q ss_pred ------CC--e-------EEEEeCC----Cc----EEEEeccCcCCcCCCCeeEEEECCCCCEEEE
Q 016446 248 ------NR--T-------VAVWNFR----GE----LVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 290 (389)
Q Consensus 248 ------D~--t-------IklWd~~----G~----~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS 290 (389)
|+ . ++|+..+ |+ ....+..-........|..+++-||+++|+-
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 33 2 6677654 32 2333432000001123788999999999886
No 440
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=77.60 E-value=6 Score=27.93 Aligned_cols=31 Identities=13% Similarity=0.287 Sum_probs=26.1
Q ss_pred CceeEEEecCCC--eEEEEecCCCeEEEEeCCC
Q 016446 102 WPGFVEFDDVNG--KVLTYSAQDSIYKVFDLKN 132 (389)
Q Consensus 102 ~~~~v~Fs~pdG--~~Las~s~D~tiklWdl~~ 132 (389)
.++.++|||.++ .+||-+-.-+-|-|+|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 457899995567 7999999999999999874
No 441
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.24 E-value=14 Score=42.75 Aligned_cols=103 Identities=11% Similarity=0.069 Sum_probs=71.1
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCe-EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEecc
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED 266 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~-~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~g 266 (389)
..+.+++-.....+....|..|++--+..-. .++. -.-...+.+|+|+|-|+.++-|. .||+.-+...++..+.+.+
T Consensus 159 ~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~ 237 (1405)
T KOG3630|consen 159 LKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPE 237 (1405)
T ss_pred ccccccCCccchhhhhccccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccC
Confidence 3445554334555666688888876553211 1121 12345789999999999999997 9999999999888777755
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
-.... +..|.+|.|=....+||.++.
T Consensus 238 Pp~~e-~yrvl~v~Wl~t~eflvvy~n 263 (1405)
T KOG3630|consen 238 PPVEE-NYRVLSVTWLSTQEFLVVYGN 263 (1405)
T ss_pred CCcCC-CcceeEEEEecceeEEEEecc
Confidence 43322 245889999888999998864
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.20 E-value=38 Score=37.73 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=60.9
Q ss_pred CceEEEEecccceeeeeeecCCc----------------------ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 22 SGVCAAFSRETNRRICFLNVSPD----------------------EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 22 ~gtiklW~~~tg~~l~tl~~~~~----------------------~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
|+-+-+||-. ..++.++|--.. --|..|.+||+|..||.++. +.+.
T Consensus 41 d~~L~vWd~~-e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~-----------~~v~ 108 (717)
T PF10168_consen 41 DGDLFVWDSS-ECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGP-----------RGVV 108 (717)
T ss_pred CCEEEEEECC-CCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcC-----------CcEE
Confidence 5777788874 566655432111 13889999999999988532 2333
Q ss_pred EeEecc-----CCCCC-----c-------ceeEeeecccCceeEEEecCC---CeEEEEecCCCeEEEEeCCCCe-EEEE
Q 016446 80 IEYIRR-----GKPDS-----G-------FALFESESLKWPGFVEFDDVN---GKVLTYSAQDSIYKVFDLKNYT-MLYS 138 (389)
Q Consensus 80 l~~i~~-----g~~~~-----~-------~~l~~~~~~~~~~~v~Fs~pd---G~~Las~s~D~tiklWdl~~g~-~l~t 138 (389)
|-.++. |.+.. . ..+|......-+.-|.|. |. +..|+--..|+++|++|+...+ +.++
T Consensus 109 V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~Wh-P~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 109 VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWH-PWSESDSHLVVLTSDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEc-CCCCCCCeEEEEecCCEEEEEecCCCCCCeEE
Confidence 333321 11100 0 013332222234458897 55 5778878889999999997644 4333
Q ss_pred e
Q 016446 139 I 139 (389)
Q Consensus 139 l 139 (389)
+
T Consensus 188 ~ 188 (717)
T PF10168_consen 188 L 188 (717)
T ss_pred E
Confidence 3
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=76.94 E-value=1e+02 Score=32.36 Aligned_cols=189 Identities=11% Similarity=-0.018 Sum_probs=95.8
Q ss_pred CCeEEEEecCCC-----eEEEEeCCCCeEE--EEecCCc-EEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 112 NGKVLTYSAQDS-----IYKVFDLKNYTML--YSISDKH-VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 112 dG~~Las~s~D~-----tiklWdl~~g~~l--~tl~~~~-V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
++.+.+.|+.++ ++..+|..+.+-. ..++... -.+++.-+|...++++.+. ..++..||..+++-...-+-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~-~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN-PTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC-CCceEEEECCCCeEEECCCC
Confidence 567778887653 5667787766532 2222211 1223333666666665332 25788899877643321111
Q ss_pred cCCce-eEEEEEecCCCeEEEEeCC---CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-C
Q 016446 184 LLHRN-KKVDFIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-G 258 (389)
Q Consensus 184 ~~~~~-~~v~f~~~~~~~l~~~s~D---~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G 258 (389)
...+. ..++. .++...++|+.+ .++..||.++.+-.....-....-...+-.-+|++.+.| |.+..+|.+ +
T Consensus 350 ~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~ 425 (480)
T PHA02790 350 LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESSN 425 (480)
T ss_pred CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCCC
Confidence 11111 12222 335555667644 457789988766443211111111112224577777776 356788875 3
Q ss_pred c--EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 259 E--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 259 ~--~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
+ .+..+.. .. .....++ -+|++.+.|+.+. .+.-.+|..+|..+++-
T Consensus 426 ~W~~~~~m~~--~r---~~~~~~v--~~~~IYviGG~~~------~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 426 TWTLIDDPIY--PR---DNPELII--VDNKLLLIGGFYR------GSYIDTIEVYNNRTYSW 474 (480)
T ss_pred cEeEcCCCCC--Cc---cccEEEE--ECCEEEEECCcCC------CcccceEEEEECCCCeE
Confidence 2 2332221 01 1112233 3889999987642 11125788888776653
No 444
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=76.94 E-value=95 Score=32.02 Aligned_cols=234 Identities=15% Similarity=0.063 Sum_probs=109.3
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE-Ee-c-CCcEEEEEEc----CCceEEEEecCCCC-----eeEEEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SI-S-DKHVQEIKIS----PGIMLLIFNRSSSH-----VPLKIL 170 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~-tl-~-~~~V~~vafS----~g~~la~~~~~s~d-----~tiklW 170 (389)
+..|+|+ ++-.-||-|-..|.|=||.....+.-. .- . ........|+ |++.+-+....... .++-|.
T Consensus 4 v~~vs~a-~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 4 VTHVSFA-PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp EEEEEEE-TTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred EEEEEec-CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4578998 666677778888999888753322111 00 0 0111111222 22222221111100 122222
Q ss_pred EcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE--ccc------CCCceEEEEEc-----
Q 016446 171 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRT------EFMTPSAFIFL----- 237 (389)
Q Consensus 171 d~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~--l~g------h~~~v~sv~fs----- 237 (389)
+. ..+.+..++.+ +=+.+|+|.+||++.|-|++.-..+.. +.. ....|.++.|+
T Consensus 83 ~~-----------~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 83 DA-----------KQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp --------------S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred ec-----------cCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence 22 24677777765 468899999999999999988776554 333 34467778785
Q ss_pred CCC---cEEEEEc-CCeEEEEeC--C--CcEEEEecc----CcCCcCCCCeeEEEECCCCCEEEEEecCCC---------
Q 016446 238 YEN---QLFLTFR-NRTVAVWNF--R--GELVTSFED----HLLWHPDCNTNNIYITSDQDLIISYCKAEP--------- 296 (389)
Q Consensus 238 pdg---~~laS~s-D~tIklWd~--~--G~~l~tl~g----h~~~~~~~~v~sv~fSpdG~~laS~s~D~~--------- 296 (389)
.|+ -+|..|. .|++.++.+ + |.....+.+ |.+++ +.=..|+.+...-+.+....-
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i----~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPI----LSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS--------EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCce----EEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 233 4566776 888888875 2 433333332 33331 222335433211111110000
Q ss_pred cccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEE-----CCC
Q 016446 297 EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-----DEE 371 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svaf-----Spd 371 (389)
...+....+..||+...-++++.++..... ....++.| ...
T Consensus 226 ~g~vVvvSe~~irv~~~~~~k~~~K~~~~~----------------------------------~~~~~~~vv~~~~~~~ 271 (395)
T PF08596_consen 226 PGYVVVVSESDIRVFKPPKSKGAHKSFDDP----------------------------------FLCSSASVVPTISRNG 271 (395)
T ss_dssp -EEEEEE-SSEEEEE-TT---EEEEE-SS-----------------------------------EEEEEEEEEEEE-EEE
T ss_pred CcEEEEEcccceEEEeCCCCcccceeeccc----------------------------------cccceEEEEeecccCC
Confidence 000111113689999988888876654221 13334444 346
Q ss_pred CCEEEEecCCCcEEEcc
Q 016446 372 RNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 372 g~~LaSgs~D~tIrlW~ 388 (389)
+..|++=-.||.||+..
T Consensus 272 ~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 272 GYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp EEEEEEEETTSEEEEEE
T ss_pred ceEEEEEECCCcEEEEE
Confidence 78888888999998863
No 445
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=76.93 E-value=1.5e+02 Score=34.24 Aligned_cols=226 Identities=11% Similarity=0.086 Sum_probs=125.9
Q ss_pred ccEEEEEecCceEEEEeccc--ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCC-----cceeeeeeeEeEecc
Q 016446 13 RDIVFALAHSGVCAAFSRET--NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNF-----SSLKCRSTKIEYIRR 85 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~t--g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~-----~~l~~~~~~l~~i~~ 85 (389)
.+-+|++. .+.+++--++- --.++|+.-+ +..+.++|++--.+++..+. ....- +.-.++.+++.|=.+
T Consensus 684 ~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~--~~prrI~~q~~sl~~~v~s~-r~e~~~~~~~ee~~~s~l~vlD~nT 759 (1096)
T KOG1897|consen 684 PDSLASAN-GGALTIGTIDEIQKLHIRTVPLG--ESPRRICYQESSLTFGVLSN-RIESSAEYYGEEYEVSFLRVLDQNT 759 (1096)
T ss_pred CceEEEec-CCceEEEEecchhhcceeeecCC--CChhheEecccceEEEEEec-ccccchhhcCCcceEEEEEEecCCc
Confidence 44455444 44556655432 2345565553 57788888885555444321 11110 111223333333111
Q ss_pred CCCCCcceeEe-ee-----cccCceeEEEecCC-CeEEEEecC----------CCeEEEEeCCCCeEEEEecC----CcE
Q 016446 86 GKPDSGFALFE-SE-----SLKWPGFVEFDDVN-GKVLTYSAQ----------DSIYKVFDLKNYTMLYSISD----KHV 144 (389)
Q Consensus 86 g~~~~~~~l~~-~~-----~~~~~~~v~Fs~pd-G~~Las~s~----------D~tiklWdl~~g~~l~tl~~----~~V 144 (389)
...+. ++ ..-.+-++.|. .| +.+++-|.. .|-|-|+....++.+...+. +.|
T Consensus 760 ------f~vl~~hef~~~E~~~Si~s~~~~-~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav 832 (1096)
T KOG1897|consen 760 ------FEVLSSHEFERNETALSIISCKFT-DDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAV 832 (1096)
T ss_pred ------eeEEeeccccccceeeeeeeeeec-CCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccce
Confidence 11111 22 11123345686 44 777776531 23344444444333333332 344
Q ss_pred EEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCeEEE
Q 016446 145 QEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELME 222 (389)
Q Consensus 145 ~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s--~D~tIklWd~~tg~~~~ 222 (389)
.++..=.|..||.- . ..|||++..+++.|+.=..|..++..+... --++.|++|- ..=|+--+.-..|....
T Consensus 833 ~aL~~fngkllA~I--n---~~vrLye~t~~~eLr~e~~~~~~~~aL~l~-v~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 833 YALVEFNGKLLAGI--N---QSVRLYEWTTERELRIECNISNPIIALDLQ-VKGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred eehhhhCCeEEEec--C---cEEEEEEccccceehhhhcccCCeEEEEEE-ecCcEEEEeeccceEEEEEEeccCCceEE
Confidence 44443367777654 2 579999999998888777777788777775 4578888886 44455556666676776
Q ss_pred Eccc-CCCceEEEEEcCCCcEEEEEcCCeEEEEe
Q 016446 223 VSRT-EFMTPSAFIFLYENQLFLTFRNRTVAVWN 255 (389)
Q Consensus 223 ~l~g-h~~~v~sv~fspdg~~laS~sD~tIklWd 255 (389)
.-+. |..|..++.+..+-.++.+-.+|.+.+-.
T Consensus 907 vArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~ 940 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDTYLGAENSGNLFTVR 940 (1096)
T ss_pred eehhhCccceeeEEEecCceEEeecccccEEEEE
Confidence 6543 66789999998888887655566665443
No 446
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=76.49 E-value=27 Score=38.73 Aligned_cols=103 Identities=12% Similarity=0.205 Sum_probs=64.5
Q ss_pred CCeEEEEecCCCeEEEEeCCC-------C-------------eEEEEec-CCcEEEEEEc--CCceEEEEecCCCCeeEE
Q 016446 112 NGKVLTYSAQDSIYKVFDLKN-------Y-------------TMLYSIS-DKHVQEIKIS--PGIMLLIFNRSSSHVPLK 168 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~-------g-------------~~l~tl~-~~~V~~vafS--~g~~la~~~~~s~d~tik 168 (389)
+..+|+.|.+||.|-+|..++ . ++.+.+. +..+|+++|. +...|++.++.+.--||-
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 567888899999999996411 1 1234444 5689999998 655554444444333443
Q ss_pred EEEcCCCeEEE--EEeecCCceeEEEEEecC--CC---eEEEEeCCCcEEEEEC
Q 016446 169 ILSIEDGTVLK--VFYHLLHRNKKVDFIEQF--NE---KLLVKQENENLQILDV 215 (389)
Q Consensus 169 lWd~~tG~~l~--tl~~~~~~~~~v~f~~~~--~~---~l~~~s~D~tIklWd~ 215 (389)
-..+...+.-. .. .|.|.|.+|.|..-+ +. ++++++-.|++-+|++
T Consensus 193 af~l~~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecccccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 34442222111 11 266889999998433 22 6677889999988877
No 447
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=76.09 E-value=73 Score=30.25 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=41.3
Q ss_pred eec-cEEEEEecCceEEEEeccc--ceeeeeeecCCcceEEEEEEeeCCCEEEEEE
Q 016446 11 AAR-DIVFALAHSGVCAAFSRET--NRRICFLNVSPDEVIRSLFYNKNNDSLITVS 63 (389)
Q Consensus 11 ~~~-~~~a~~~~~gtiklW~~~t--g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s 63 (389)
.+| |.|+.+.....|.+|++++ .+.+++|.- -+.|..++++.-|++|++-=
T Consensus 25 ~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 25 CGGPDALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccceEEEEE
Confidence 345 8888888899999999873 467777764 47999999999999999853
No 448
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=75.98 E-value=99 Score=34.19 Aligned_cols=163 Identities=21% Similarity=0.273 Sum_probs=91.4
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEeccc--ceeeeeeecCCc-ceEEEEEEe----eCC-CEEEEEEEeecCCCcce
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRET--NRRICFLNVSPD-EVIRSLFYN----KNN-DSLITVSVYASDNFSSL 73 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~t--g~~l~tl~~~~~-~~v~sv~~s----pdg-~~l~s~s~~~~~d~~~l 73 (389)
.+|..|-|. ++.|.+..++|.|++|+.+. .+..-.+...+. +.+.+-|.+ -+| +.+...+...+..
T Consensus 130 ~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k---- 205 (670)
T PF10395_consen 130 DKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSK---- 205 (670)
T ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCc----
Confidence 578888888 89999999999999999821 222112222221 233331111 222 3445544323333
Q ss_pred eeeeeeEeEe-ccCCCCCcceeEe--eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec------CC--
Q 016446 74 KCRSTKIEYI-RRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------DK-- 142 (389)
Q Consensus 74 ~~~~~~l~~i-~~g~~~~~~~l~~--~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~------~~-- 142 (389)
...++..+ ..+.. ...+-. .+... .....|...+|++.-- .+++|.+|++.+-+..+++. ..
T Consensus 206 --~~ykL~~l~~~~~~--~~El~s~~~e~~~-~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~ 278 (670)
T PF10395_consen 206 --LSYKLISLSNESSS--IFELSSTILENFG-LEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESD 278 (670)
T ss_pred --EEEEEEEeccCCcc--eEEeehheeccCC-cccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccc
Confidence 45555555 11111 111110 11111 1223444458987665 78899999998888777664 11
Q ss_pred cEEE-EEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEe
Q 016446 143 HVQE-IKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 143 ~V~~-vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~ 182 (389)
.+.+ .+.|++..|++. ..+|.|.|+.-..+|.++.
T Consensus 279 ~~vSl~~~s~nRvLLs~-----~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 279 DLVSLKPPSPNRVLLSV-----NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cceEeecCCCCeEEEEc-----CCEEEEEeehhhhhhhhhh
Confidence 2323 334467777653 2689999998777777665
No 449
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=75.07 E-value=1.3e+02 Score=32.61 Aligned_cols=195 Identities=11% Similarity=0.018 Sum_probs=102.0
Q ss_pred ccEEEEEecC------ceEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec
Q 016446 13 RDIVFALAHS------GVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 84 (389)
Q Consensus 13 ~~~~a~~~~~------gtiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~ 84 (389)
+.+++.+... .+++.+|..+++ .+..++.. -...++++ -+|+..|. |+.|-..-...++..+|..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~--r~~~~~~~-~~~~lYv~----GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP--RCRVGVAV-LNGKLYVV----GGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc--cccccEEE-ECCEEEEE----ccccCCCcccceEEEecCC
Confidence 3444444444 578889987763 33333322 22334444 45565555 4554123344677777877
Q ss_pred cCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe-----EEEEeCCCCeE--EEEecCCcEEE--EEEcCCceE
Q 016446 85 RGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI-----YKVFDLKNYTM--LYSISDKHVQE--IKISPGIML 155 (389)
Q Consensus 85 ~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t-----iklWdl~~g~~--l~tl~~~~V~~--vafS~g~~l 155 (389)
..+.....++.+ ..+-.+|+-- +|.+-|.|+.|+. |..||..+-+- +..+.. .... ++--.|...
T Consensus 358 ~~~W~~~a~M~~---~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 358 TNQWTPVAPMNT---KRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLY 431 (571)
T ss_pred CCceeccCCccC---ccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEE
Confidence 766533223322 1111234443 7999999999964 66666554441 111111 2323 333367777
Q ss_pred EEEecCCCC---eeEEEEEcCCCeEEEEEeecCCce-eEEEEEecCCCeEEEEeCCC-----cEEEEECCCCeEEE
Q 016446 156 LIFNRSSSH---VPLKILSIEDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQENE-----NLQILDVRNAELME 222 (389)
Q Consensus 156 a~~~~~s~d---~tiklWd~~tG~~l~tl~~~~~~~-~~v~f~~~~~~~l~~~s~D~-----tIklWd~~tg~~~~ 222 (389)
++++.++.. .++...|..|++-...-+--..+. ..++.. ++...++|+.|+ +|..+|.++.+-..
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 777655544 577888888766443221111111 334443 244555577665 37778887765433
No 450
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=72.08 E-value=1.8e+02 Score=32.86 Aligned_cols=149 Identities=11% Similarity=0.092 Sum_probs=86.6
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEecC-CcEE-----------EEEEc--C---CceEEEEecCC-------CCeeEEEE
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQ-----------EIKIS--P---GIMLLIFNRSS-------SHVPLKIL 170 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~~-~~V~-----------~vafS--~---g~~la~~~~~s-------~d~tiklW 170 (389)
.|..++.|+.+.--|.+||+.+..+.. ..|. ...++ | +.+++++++.. .++.|+=.
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 566677788888889999998766542 2221 01112 3 55666664321 25789999
Q ss_pred EcCCCeEEEEEee-c----------------CCcee-EEEEEecCCCeEEEE------------------eCCCcEEEEE
Q 016446 171 SIEDGTVLKVFYH-L----------------LHRNK-KVDFIEQFNEKLLVK------------------QENENLQILD 214 (389)
Q Consensus 171 d~~tG~~l~tl~~-~----------------~~~~~-~v~f~~~~~~~l~~~------------------s~D~tIklWd 214 (389)
|++||+++-.+.. . ...++ ..++. +..+.+..+ -..+.|--.|
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D-~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYD-EKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEc-CCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 9999999987751 0 00111 11111 111222210 1346677789
Q ss_pred CCCCeEEEEcccCCCceEE---------EEEcC-CCc---EEEEEc-CCeEEEEeCC-CcEEEEe
Q 016446 215 VRNAELMEVSRTEFMTPSA---------FIFLY-ENQ---LFLTFR-NRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 215 ~~tg~~~~~l~gh~~~v~s---------v~fsp-dg~---~laS~s-D~tIklWd~~-G~~l~tl 264 (389)
++||+..-.++...+.+|. +.+.- +|+ .++.+. +|.+.+.|.+ |+++...
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 9999986655442111222 22332 674 677777 9999999996 9987654
No 451
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=71.66 E-value=1.5e+02 Score=32.01 Aligned_cols=228 Identities=9% Similarity=-0.013 Sum_probs=115.4
Q ss_pred eeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC------CeEEEEeCCCCeEE--EEecCC-cEE
Q 016446 75 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD------SIYKVFDLKNYTML--YSISDK-HVQ 145 (389)
Q Consensus 75 ~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D------~tiklWdl~~g~~l--~tl~~~-~V~ 145 (389)
+..+...|..+++......+.. ... ..++++- +|++-+.|+.| .++-.+|..+.+=. ..+... .=.
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~--~r~-~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~ 374 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPS--PRC-RVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF 374 (571)
T ss_pred cceeEEecCCcCcEeecCCCCc--ccc-cccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc
Confidence 4566667766665421111111 111 1346774 68999999999 46666776665511 111111 122
Q ss_pred EEEEcCCceEEEEecCCCC--eeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCC------CcEEEEECCC
Q 016446 146 EIKISPGIMLLIFNRSSSH--VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRN 217 (389)
Q Consensus 146 ~vafS~g~~la~~~~~s~d--~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D------~tIklWd~~t 217 (389)
+++.-.|.+-|+++.++.. .+|..+|..+.+--..-+ ........+.....+...++|+.| .++..+|..+
T Consensus 375 ~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 375 GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred eeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 3444467777777555322 367788877644322221 111222223222335555557644 5678899988
Q ss_pred CeEEEEcccCCCceEEEEEcCCCcEEEEEc-CC-----eEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 218 AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR-----TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 218 g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~-----tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
.+......--......-+-.-++++.+-|+ |+ +|.-+|........+..=..+.. .+.-++ -+++..|.|
T Consensus 454 ~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs--~~g~~~--~~~~ly~vG 529 (571)
T KOG4441|consen 454 NTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS--AVGVVV--LGGKLYAVG 529 (571)
T ss_pred CceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc--cccEEE--ECCEEEEEe
Confidence 875443211111111112344677777776 65 47888886333222221111100 011111 278888888
Q ss_pred ecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 292 CKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 292 s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
+.|. ...=++|..||..+.+-
T Consensus 530 G~~~------~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 530 GFDG------NNNLNTVECYDPETDTW 550 (571)
T ss_pred cccC------ccccceeEEcCCCCCce
Confidence 7763 12236788888776654
No 452
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.44 E-value=1.2e+02 Score=30.30 Aligned_cols=183 Identities=13% Similarity=0.133 Sum_probs=112.1
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--C-CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~-~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
+.++.|+ |+-++|.+-.....--||=-.+|+.+.+++ + +.-.+|.+. +|++.+ + +..++++.+..+.-+..+
T Consensus 88 vS~LTyn-p~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi-~--dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 88 VSSLTYN-PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVI-V--DERDRALYLFTVDADTTV 163 (316)
T ss_pred ccceeeC-CCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEE-E--ehhcceEEEEEEcCCccE
Confidence 4579998 888888888777777788777999999887 2 345567777 555554 3 456678888776655333
Q ss_pred EEE-------ee--c-CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe---EEEEcccCCC-------ceEEEEEcC
Q 016446 179 KVF-------YH--L-LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFM-------TPSAFIFLY 238 (389)
Q Consensus 179 ~tl-------~~--~-~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~---~~~~l~gh~~-------~v~sv~fsp 238 (389)
..+ .. + -.....+++. |.++.+...-+-..|+|+-+..+. -+.....++. .|.++.|.+
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d-~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWD-PVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecC-CCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 221 11 1 1223678887 567788888888888888776433 1333333333 366777875
Q ss_pred -CCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCC----cCCCCeeEEEECCCCCEEEE
Q 016446 239 -ENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLW----HPDCNTNNIYITSDQDLIIS 290 (389)
Q Consensus 239 -dg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~----~~~~~v~sv~fSpdG~~laS 290 (389)
.+.+|+=+- ++.+---|..|+.+..+.-+.+. +....-..|+.-++|.+-+.
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred CCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 455555554 77776677778765544422221 11111245666666654443
No 453
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.35 E-value=0.43 Score=50.03 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=97.8
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
..+.|....+- |++.-||-+..+-+++.+|- .|+.+..+. ...-.+++.- +|..+|...... +++.|||+.+ +
T Consensus 33 alv~pi~~~w~-~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~--~piylwd~n~-e 107 (615)
T KOG2247|consen 33 ALVGPIIHRWR-PEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKT--GPIYLWDVNS-E 107 (615)
T ss_pred hccccceeeEe-cCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcC--CCeeechhhh-h
Confidence 33444455564 67777888888999999994 566554443 2222233333 566666554333 7999999875 3
Q ss_pred EEEEEeecCCceeEE-EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEe
Q 016446 177 VLKVFYHLLHRNKKV-DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWN 255 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v-~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd 255 (389)
--++|+.-+.+..++ +++ +....++.+-.-+.++|++..+.+..-..-.|...+..++..++++.+..+.|.++.+=.
T Consensus 108 ytqqLE~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 108 YTQQLESGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTT 186 (615)
T ss_pred hHHHHhccCcchHHHHhhc-cCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhh
Confidence 333444222222222 233 434556666688999999998877666555599999999999999877655576654444
Q ss_pred CCCcE
Q 016446 256 FRGEL 260 (389)
Q Consensus 256 ~~G~~ 260 (389)
..|+-
T Consensus 187 qeget 191 (615)
T KOG2247|consen 187 QEGET 191 (615)
T ss_pred hccce
Confidence 33443
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=68.41 E-value=15 Score=25.94 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=24.5
Q ss_pred CceeEEEEEecCC--CeEEEEeCCCcEEEEECCCC
Q 016446 186 HRNKKVDFIEQFN--EKLLVKQENENLQILDVRNA 218 (389)
Q Consensus 186 ~~~~~v~f~~~~~--~~l~~~s~D~tIklWd~~tg 218 (389)
+.++.+.|+|.++ +.|+.+-.-+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3578899994334 56666777899999999863
No 455
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=67.96 E-value=38 Score=27.54 Aligned_cols=67 Identities=7% Similarity=0.069 Sum_probs=36.6
Q ss_pred eEEEECCC-CCEEEEEecCCCccc------ccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 277 NNIYITSD-QDLIISYCKAEPEDQ------WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 277 ~sv~fSpd-G~~laS~s~D~~~~~------~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
++|++.++ |....|-+...-+.. .++..+|-+--||..|++.-.-+.+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~------------------------- 55 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG------------------------- 55 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-------------------------
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-------------------------
Confidence 36788888 888887653221111 4445667788888888775444433
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEe
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTG 378 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSg 378 (389)
|.-=+.|++|||++.|+-+
T Consensus 56 ----------L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 56 ----------LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ----------ESSEEEEEE-TTSSEEEEE
T ss_pred ----------CCccCeEEEcCCCCEEEEE
Confidence 2355679999999965443
No 456
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.30 E-value=63 Score=38.03 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=61.1
Q ss_pred CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCC-------eEEEEeCCCcEEEEECC----CCeEEEEccc------
Q 016446 164 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE-------KLLVKQENENLQILDVR----NAELMEVSRT------ 226 (389)
Q Consensus 164 d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~-------~l~~~s~D~tIklWd~~----tg~~~~~l~g------ 226 (389)
|+.+-||+.+++..+..+.+..|.+..|....|-++ +++.-.--..|-|.-+. +++. ..+..
T Consensus 98 Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~-~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL-SIFNTSFKISV 176 (1311)
T ss_pred CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc-cccccceeeec
Confidence 467899999999999988888899999988766544 34433333334444332 2222 11222
Q ss_pred CCCceEEEEEcCCCcEEEEEcCCeEEEEeC
Q 016446 227 EFMTPSAFIFLYENQLFLTFRNRTVAVWNF 256 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~sD~tIklWd~ 256 (389)
..-.|..++...+|+.|.+|.|| .||.+
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl 204 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDG--NLYEL 204 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCC--CEEEE
Confidence 24578889989999999999976 67874
No 457
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=65.73 E-value=41 Score=31.88 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=38.0
Q ss_pred cCCCeEEEEeCC--CCeEEEEecC-CcEEEEEEc-CCceEEEEecCCCCe---eEEE
Q 016446 120 AQDSIYKVFDLK--NYTMLYSISD-KHVQEIKIS-PGIMLLIFNRSSSHV---PLKI 169 (389)
Q Consensus 120 s~D~tiklWdl~--~g~~l~tl~~-~~V~~vafS-~g~~la~~~~~s~d~---tikl 169 (389)
....+|.+|++. ..+++.++.. +.|..+++| .|++|++-....... .+|+
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~ 91 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRA 91 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEE
Confidence 455789999997 3446788874 899999999 799999876655444 4454
No 458
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=64.34 E-value=1.8e+02 Score=30.01 Aligned_cols=263 Identities=13% Similarity=0.081 Sum_probs=122.0
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
.|..|=|+ .--+|++.++|-|=||..+.++.-. .+....-...-|.|.. ..+ ....|-|
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~---~~~~~~~~~~~~~~~~----------~~~------~~~~l~d 63 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG---NREQPPDLDYNFRRFS----------LNN------SPGKLTD 63 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S------------GGG------SS-SEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC---ccCCCcccCccccccc----------ccC------CCcceEE
Confidence 47788888 3348999999999999886433221 0000011111111110 011 1222333
Q ss_pred e---ccCCCCCc-ce--eEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--C--------CcEEE
Q 016446 83 I---RRGKPDSG-FA--LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D--------KHVQE 146 (389)
Q Consensus 83 i---~~g~~~~~-~~--l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~--------~~V~~ 146 (389)
+ ....+-.+ .+ +. +...+.+.+++.| .=| .+|-|..+|++.|-|+.....++.-+ . ..|.+
T Consensus 64 i~~r~~~~~~~gf~P~~l~-~~~~g~vtal~~S-~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ 140 (395)
T PF08596_consen 64 ISDRAPPSLKEGFLPLTLL-DAKQGPVTALKNS-DIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTS 140 (395)
T ss_dssp -GGG--TT-SEEEEEEEEE----S-SEEEEEE--BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEE
T ss_pred ehhhCCcccccccCchhhe-eccCCcEeEEecC-CCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeE
Confidence 3 22221111 11 11 2235667788987 335 99999999999999998888887642 1 36888
Q ss_pred EEEcC----C-----ceEEEEecCCCCeeEEEEEcC---CCeEEEEEe----ecCCceeEEEEEecCCC-----------
Q 016446 147 IKISP----G-----IMLLIFNRSSSHVPLKILSIE---DGTVLKVFY----HLLHRNKKVDFIEQFNE----------- 199 (389)
Q Consensus 147 vafS~----g-----~~la~~~~~s~d~tiklWd~~---tG~~l~tl~----~~~~~~~~v~f~~~~~~----------- 199 (389)
+.|+- + -.|..+... +.+.++.+. .|.-...+. .+.+.+..+.....+.+
T Consensus 141 ieF~vm~~~~D~ySSi~L~vGTn~---G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~ 217 (395)
T PF08596_consen 141 IEFSVMTLGGDGYSSICLLVGTNS---GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQ 217 (395)
T ss_dssp EEEEEEE-TTSSSEEEEEEEEETT---SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHH
T ss_pred EEEEEEecCCCcccceEEEEEeCC---CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhh
Confidence 88871 1 133333222 344444332 122111221 22344444443211111
Q ss_pred ---------eEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEc-----CCCcEEEEEc-CCeEEEEeC-CCcEEEE
Q 016446 200 ---------KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL-----YENQLFLTFR-NRTVAVWNF-RGELVTS 263 (389)
Q Consensus 200 ---------~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs-----pdg~~laS~s-D~tIklWd~-~G~~l~t 263 (389)
.++....+..||+....+.++.+..........++.|- ..+..|+.-. ||.|+++-+ .-+.+..
T Consensus 218 ~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 218 GLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKS 297 (395)
T ss_dssp GGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEE
T ss_pred ccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhc
Confidence 24455568889999998887755433333345556662 3566777776 999999999 4566555
Q ss_pred eccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 264 FEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
+.-+.... ...+....|+++|+.+.-.+.
T Consensus 298 ~~l~~~~d-~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 298 VSLPPPLD-SRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp EE-SS----HHHHTT-EE-TTS-EEEE-SS
T ss_pred ccCCCccc-cccccccEECCCCCEEEEeCc
Confidence 54322110 012467888999998887654
No 459
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=63.91 E-value=23 Score=22.07 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=21.2
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEE
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKV 127 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tikl 127 (389)
..|..|+.+ ++|+++++-+....|++
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence 357789998 89999998887777765
No 460
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=63.36 E-value=1.9e+02 Score=29.89 Aligned_cols=196 Identities=13% Similarity=0.152 Sum_probs=103.5
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-----CCce--EEEEe-cCCCCeeEEEEEcC--CCeEEEE
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-----PGIM--LLIFN-RSSSHVPLKILSIE--DGTVLKV 180 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-----~g~~--la~~~-~~s~d~tiklWd~~--tG~~l~t 180 (389)
|...+|+...-++=+.++|| .|+.++.+.....+.|..- .|+. ||+++ ......+|+++.+. +|. |+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~ 143 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTD 143 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE
T ss_pred cccceEEEEeCCCCEEEEcC-CCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceE
Confidence 44445555566778889998 8888888864444433322 3443 33332 22223689999764 564 444
Q ss_pred EeecC-------CceeEEEEE--ecCCCeEEE-EeCCCcEEEEECC---CC----eEEEEcccCCCceEEEEEcCCCcEE
Q 016446 181 FYHLL-------HRNKKVDFI--EQFNEKLLV-KQENENLQILDVR---NA----ELMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 181 l~~~~-------~~~~~v~f~--~~~~~~l~~-~s~D~tIklWd~~---tg----~~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
+.... ..++.+++- +.++...+. ...+|.+..|-+. .| ++++.|..-. +++.++.-+....|
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-QPEGCVVDDETGRL 222 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--EEEEEEETTTTEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-cceEEEEecccCCE
Confidence 43211 224556652 223444444 5688988777654 33 4577776543 78999888877666
Q ss_pred EEEc-CCeEEEEeCC------CcEEEEeccCcCCcCCCCeeEEEE--CCCCC-EEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 244 LTFR-NRTVAVWNFR------GELVTSFEDHLLWHPDCNTNNIYI--TSDQD-LIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 244 aS~s-D~tIklWd~~------G~~l~tl~gh~~~~~~~~v~sv~f--SpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
--+- |.-|.-++.+ ++++....+... ..| |..|++ -++|+ ||+..|.- +++..+||.
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l-~aD--vEGlaly~~~~g~gYLivSsQG----------~~sf~Vy~r 289 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGL-VAD--VEGLALYYGSDGKGYLIVSSQG----------DNSFAVYDR 289 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB--S---EEEEEEEE-CCC-EEEEEEEGG----------GTEEEEEES
T ss_pred EEecCccEEEEEecCCCCCCcceeeeccccccc-ccC--ccceEEEecCCCCeEEEEEcCC----------CCeEEEEec
Confidence 6666 7666555553 234444433211 111 666666 45654 56655553 579999996
Q ss_pred CC-CeEEEEe
Q 016446 314 LT-GKCLAKI 322 (389)
Q Consensus 314 ~t-g~~l~tl 322 (389)
+. ...+..+
T Consensus 290 ~~~~~~~g~f 299 (381)
T PF02333_consen 290 EGPNAYVGSF 299 (381)
T ss_dssp STT--EEEEE
T ss_pred CCCCcccceE
Confidence 53 2444444
No 461
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=59.90 E-value=1.8e+02 Score=28.49 Aligned_cols=182 Identities=12% Similarity=0.103 Sum_probs=97.7
Q ss_pred eEEEEeCCCCeEEEEec--------CCcEEEEEEc--CC----ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCcee
Q 016446 124 IYKVFDLKNYTMLYSIS--------DKHVQEIKIS--PG----IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 189 (389)
Q Consensus 124 tiklWdl~~g~~l~tl~--------~~~V~~vafS--~g----~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~ 189 (389)
.+-.||+++++.++++. ...+.++++- ++ .+...+ +....-|-+.|+.+|+.-+.+.++.....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt--D~~~~glIV~dl~~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT--DSGGPGLIVYDLATGKSWRVLHNSFSPDP 112 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE--ETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe--CCCcCcEEEEEccCCcEEEEecCCcceec
Confidence 34467888888766553 2468888887 33 344444 33345788999999999888875433321
Q ss_pred -EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC---CCcEEEEEcCCeEEEEeCC------C-
Q 016446 190 -KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY---ENQLFLTFRNRTVAVWNFR------G- 258 (389)
Q Consensus 190 -~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp---dg~~laS~sD~tIklWd~~------G- 258 (389)
...|.. .|+..+...| +..++.+| ||+.|-=..=..-+++-+. .
T Consensus 113 ~~~~~~i---------------------~g~~~~~~dg----~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~ 167 (287)
T PF03022_consen 113 DAGPFTI---------------------GGESFQWPDG----IFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPS 167 (287)
T ss_dssp SSEEEEE---------------------TTEEEEETTS----EEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT
T ss_pred cccceec---------------------cCceEecCCC----ccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCcc
Confidence 122220 2333333222 66677755 6666543321111223211 0
Q ss_pred --------cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC---eEEEEecCCCC
Q 016446 259 --------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG---KCLAKINATNC 327 (389)
Q Consensus 259 --------~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg---~~l~tl~gH~~ 327 (389)
+.++.+ |.... .--..+++++|.+..+--. .+.|..||..+. +-+.++-
T Consensus 168 ~~~~~~~~~~v~~l-G~k~~----~s~g~~~D~~G~ly~~~~~-----------~~aI~~w~~~~~~~~~~~~~l~---- 227 (287)
T PF03022_consen 168 LSDAQALASQVQDL-GDKGS----QSDGMAIDPNGNLYFTDVE-----------QNAIGCWDPDGPYTPENFEILA---- 227 (287)
T ss_dssp --HHH-HHHT-EEE-EE-------SECEEEEETTTEEEEEECC-----------CTEEEEEETTTSB-GCCEEEEE----
T ss_pred ccccccccccceec-cccCC----CCceEEECCCCcEEEecCC-----------CCeEEEEeCCCCcCccchheeE----
Confidence 112222 22111 1357889999998887543 489999996531 1222332
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECC--CCCEEEEec
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE--ERNEIYTGN 379 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp--dg~~LaSgs 379 (389)
..++.+.++.++++.+ +|...+..+
T Consensus 228 ---------------------------~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 228 ---------------------------QDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp ---------------------------E-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred ---------------------------EcCceeeccceeeeccccCceEEEEEC
Confidence 1122346999999999 998877765
No 462
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=59.48 E-value=77 Score=35.32 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=63.8
Q ss_pred CCeEEEEeCCCcEEEEECCC-------C-------e------EEEEcccCCCceEEEEEc--CCCcEEEEEc-CCeEEEE
Q 016446 198 NEKLLVKQENENLQILDVRN-------A-------E------LMEVSRTEFMTPSAFIFL--YENQLFLTFR-NRTVAVW 254 (389)
Q Consensus 198 ~~~l~~~s~D~tIklWd~~t-------g-------~------~~~~l~gh~~~v~sv~fs--pdg~~laS~s-D~tIklW 254 (389)
.+.|+++..||.|-+|..++ . . +.-.++ -....|.+++. ...++||.++ -..|-|+
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 46777788999999996532 0 0 111111 23489999999 8889999888 7788888
Q ss_pred eCCC--cEEEEeccCcCCcCCCCeeEEEECCCC-----C-EEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 255 NFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQ-----D-LIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 255 d~~G--~~l~tl~gh~~~~~~~~v~sv~fSpdG-----~-~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
-+.. +....-..|+..+ +|.+|.|-++. . ++++++-. |.+-+|++
T Consensus 193 af~l~~~r~~~~~s~~~~h---NIP~VSFl~~~~d~~G~v~v~a~dI~-----------G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSH---NIPNVSFLDDDLDPNGHVKVVATDIS-----------GEVWTFKI 245 (717)
T ss_pred EEecccccccccccccccc---CCCeeEeecCCCCCccceEEEEEecc-----------CcEEEEEE
Confidence 6542 1111111333333 37899997754 2 66666653 77777766
No 463
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.65 E-value=3.3e+02 Score=30.63 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=42.7
Q ss_pred CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCCCcEEEE
Q 016446 208 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTS 263 (389)
Q Consensus 208 ~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~G~~l~t 263 (389)
-.|+|+|. +|.++..+.-....+-..-|+.+-.+|.--.||++.++++.|+.+..
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~ 118 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIES 118 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcc
Confidence 34889998 67776655433337778889999998877779999999999987765
No 464
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=55.42 E-value=2.2e+02 Score=31.87 Aligned_cols=29 Identities=3% Similarity=0.079 Sum_probs=24.8
Q ss_pred CCEEEEEECCCC---CEEEEecCCCcEEEccC
Q 016446 361 EDITSLFYDEER---NEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 361 ~~V~svafSpdg---~~LaSgs~D~tIrlW~~ 389 (389)
-.|..+.|+|.+ ..|+-=..|+++|++|.
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDI 178 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEec
Confidence 378999999985 78888889999999973
No 465
>PHA02790 Kelch-like protein; Provisional
Probab=54.47 E-value=2.8e+02 Score=29.08 Aligned_cols=140 Identities=13% Similarity=0.056 Sum_probs=70.2
Q ss_pred CCeEEEEecCC--CeEEEEeCCCCeE--EEEecCCc-EEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC
Q 016446 112 NGKVLTYSAQD--SIYKVFDLKNYTM--LYSISDKH-VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 186 (389)
Q Consensus 112 dG~~Las~s~D--~tiklWdl~~g~~--l~tl~~~~-V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~ 186 (389)
+|++.|.|+.+ .++..||..+.+- +..++... -.+++..+|..-+.++.++...++..+|..+.+=...-+-...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 68888888864 4678888765542 22232211 1233333677777765544445677888776543221110001
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc--ccCCCceEEEEEcCCCcEEEEEc-C-----CeEEEEeCC
Q 016446 187 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR-N-----RTVAVWNFR 257 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l--~gh~~~v~sv~fspdg~~laS~s-D-----~tIklWd~~ 257 (389)
+....+ ...++...++| |.+..+|.++.+=.... .........+ --+|++.+.|+ + .+|..+|.+
T Consensus 398 r~~~~~-~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 398 HYKSCA-LVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred cccceE-EEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECC
Confidence 111111 11223333445 35678888876643321 1111112222 33677777776 4 356666665
No 466
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=54.27 E-value=2.8e+02 Score=28.99 Aligned_cols=139 Identities=15% Similarity=0.326 Sum_probs=85.9
Q ss_pred CCeEEEEecCCCeEEEEeCCCCe-----EEEEec-CCcEEEEEEc------CCceEEEEecCCCCeeEEEEEcC--CCe-
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYT-----MLYSIS-DKHVQEIKIS------PGIMLLIFNRSSSHVPLKILSIE--DGT- 176 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~-----~l~tl~-~~~V~~vafS------~g~~la~~~~~s~d~tiklWd~~--tG~- 176 (389)
+...|+.||..|.+|+.+...+. ++.+.+ ...|..|+.- +...||+-.+- .+-++.+. .|.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~----kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPR----KLSVYSVSLVDGTV 111 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCC----EEEEEEEEecCCCc
Confidence 45678889999999999986433 333333 4667666543 24567665433 45555552 222
Q ss_pred ------EEEEE-eecCCce-eEEEEEecCC-----CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEE
Q 016446 177 ------VLKVF-YHLLHRN-KKVDFIEQFN-----EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 177 ------~l~tl-~~~~~~~-~~v~f~~~~~-----~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
.|..+ +++..+. +....- |+| +.|.+=+.||++.+++-++--....+.+ .--+-.++|.|.-..|
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G-~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCG-PFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSF 189 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEE-ECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEE
Confidence 22222 2222221 333333 222 4566678999999999866555555555 6677778899888888
Q ss_pred EEEc-CCeEEEEeC
Q 016446 244 LTFR-NRTVAVWNF 256 (389)
Q Consensus 244 aS~s-D~tIklWd~ 256 (389)
++++ +.++.-+..
T Consensus 190 vt~sss~~l~~Yky 203 (418)
T PF14727_consen 190 VTASSSWTLECYKY 203 (418)
T ss_pred EEecCceeEEEecH
Confidence 8887 778877763
No 467
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=53.41 E-value=1.1e+02 Score=27.29 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=23.6
Q ss_pred CEEEEEECCCC------CEEEEecCCCcEEEcc
Q 016446 362 DITSLFYDEER------NEIYTGNRHGLVHVWS 388 (389)
Q Consensus 362 ~V~svafSpdg------~~LaSgs~D~tIrlW~ 388 (389)
.|.++++||-| -.||.-..++.|.||.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 78999999966 4788899999999985
No 468
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.19 E-value=2.8e+02 Score=32.28 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=23.9
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeC
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDL 130 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl 130 (389)
+..++|+ |.-++||-+...|.|++.-.
T Consensus 38 ~~~~afD-~~q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 38 PSALAFD-PTQGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred Ccceeec-cccceEEEEEecccEEEecc
Confidence 4558998 89999999999999999975
No 469
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=50.38 E-value=5.1e+02 Score=31.34 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=56.5
Q ss_pred eEeeecccCceeEEEecCCCeEEEEec------------CCCeEEEEeCC--CCeEE-------EEec--------CCcE
Q 016446 94 LFESESLKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLK--NYTML-------YSIS--------DKHV 144 (389)
Q Consensus 94 l~~~~~~~~~~~v~Fs~pdG~~Las~s------------~D~tiklWdl~--~g~~l-------~tl~--------~~~V 144 (389)
+..|..+..+.+++|+ ++|.+-+.-+ .||+|-+--=. .+.|. +++. =+..
T Consensus 586 la~H~tl~~~r~Iavg-~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp 664 (1899)
T KOG4659|consen 586 LADHRTLLIQRDIAVG-TDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSP 664 (1899)
T ss_pred hhhhhhhhhhhceeec-CCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCc
Confidence 3334444456789998 8887766544 36666665321 12222 1221 1467
Q ss_pred EEEEEcCCceEEEEecCCC--------------CeeEEEEEcCCCeEEEEEeecCCceeEEEEE
Q 016446 145 QEIKISPGIMLLIFNRSSS--------------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 194 (389)
Q Consensus 145 ~~vafS~g~~la~~~~~s~--------------d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~ 194 (389)
.++|.||+..+.++..+.. ..+-.+-+. .-|++.+|.-|+.|+..|...
T Consensus 665 ~alaVsPdg~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~~p-~~QE~Y~Fnr~GqH~sTvsli 727 (1899)
T KOG4659|consen 665 YALAVSPDGDVIIADSGNSRIRKVSARMAKYDGSRTYEITDP-ERQEKYTFNRHGQHSSTVSLI 727 (1899)
T ss_pred ceEEECCCCcEEEecCCchhhhhhhhcccccCCCceeeccCc-ccceeEEEeccceeeeeEEEE
Confidence 8899997555555543321 112233342 357888998888888777765
No 470
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=49.09 E-value=47 Score=20.68 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=22.6
Q ss_pred EeeccEEEEEecCceEEEEecccceeeee
Q 016446 10 VAARDIVFALAHSGVCAAFSRETNRRICF 38 (389)
Q Consensus 10 ~~~~~~~a~~~~~gtiklW~~~tg~~l~t 38 (389)
+..+..|.+++.+|.+...|.++|+.+-+
T Consensus 3 ~~~~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 3 VLSDGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEECCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 34455788888999999999988887643
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.69 E-value=1.6e+02 Score=34.94 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=87.1
Q ss_pred eCCCcEEEEECCCCeEEEEcccCCCceEEEEE--------cCCCcEEEEE-cCCeEEEEeCC-CcE---EEEeccC-cCC
Q 016446 205 QENENLQILDVRNAELMEVSRTEFMTPSAFIF--------LYENQLFLTF-RNRTVAVWNFR-GEL---VTSFEDH-LLW 270 (389)
Q Consensus 205 s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f--------spdg~~laS~-sD~tIklWd~~-G~~---l~tl~gh-~~~ 270 (389)
..|+.+-|||.+++.-.+.+.+-...|-+|.. -|.=|+++-- .---|-|.-+. .+. ...|..+ .-+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 47999999999997766777776667777654 3444433333 24445555542 211 1112222 001
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC--C-----Ce-EEEEecCCCCCCCcccccCCCCCCC
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--T-----GK-CLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~--t-----g~-~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
+.+..|+.+.-+.+|++..+| +|| .||.+. . ++ |- ++. ++.+ ..+
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G------------~dg--~lyEl~Yq~~~gWf~~rc~-Kic-lt~s-----------~ls 228 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG------------RDG--NLYELVYQAEDGWFGSRCR-KIC-LTKS-----------VLS 228 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee------------cCC--CEEEEEEeccCchhhcccc-ccc-Cchh-----------HHH
Confidence 112348889989999998875 245 467542 0 11 11 110 1100 000
Q ss_pred ccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
. +-.+ +.+.-+.+-++|..++.....++|++=++-++|+.|+.
T Consensus 229 ~--lvPs--~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 229 S--LVPS--LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred H--hhhh--hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEc
Confidence 0 0000 11111233469999999999999999999999999973
No 472
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=46.96 E-value=93 Score=30.76 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=34.2
Q ss_pred eeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 276 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
+++|..-++|.||+|.-. -.+|-+-|-++|+.+..|.|..
T Consensus 146 iNsV~~~~~G~yLiS~R~-----------~~~i~~I~~~tG~I~W~lgG~~ 185 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRN-----------TSTIYKIDPSTGKIIWRLGGKR 185 (299)
T ss_pred eeeeeecCCccEEEEecc-----------cCEEEEEECCCCcEEEEeCCCC
Confidence 789999999999999633 3689999999999999998873
No 473
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=46.91 E-value=25 Score=26.05 Aligned_cols=19 Identities=5% Similarity=0.053 Sum_probs=16.8
Q ss_pred CEEEEEECCCCCEEEEecC
Q 016446 362 DITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 362 ~V~svafSpdg~~LaSgs~ 380 (389)
.++++++-|||++|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 5788999999999999964
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=46.89 E-value=2.9e+02 Score=27.13 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=61.9
Q ss_pred CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc---CC----eEEEEeCCCcEEEEeccCc-CCcCCCCeeEE
Q 016446 208 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NR----TVAVWNFRGELVTSFEDHL-LWHPDCNTNNI 279 (389)
Q Consensus 208 ~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s---D~----tIklWd~~G~~l~tl~gh~-~~~~~~~v~sv 279 (389)
.-|-+||..+.+-.....+-.+.|.++.|..+.++++.|. ++ .+-.||++..-..++.+-. ...+ ..|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ip-gpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIP-GPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCC-CcEEEE
Confidence 4578899888877776666778899999999999999884 33 6788999866666666522 1111 125666
Q ss_pred EE-CCCCC-EEEEEecCCCcccccCCCCCeEEEEe
Q 016446 280 YI-TSDQD-LIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 280 ~f-SpdG~-~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
.+ +.|+. +.+.|-.. ..+..|.-||
T Consensus 95 ~~~~~d~~~~~~aG~~~--------~g~~~l~~~d 121 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSA--------NGSTFLMKYD 121 (281)
T ss_pred EeeccCCceEEEeceec--------CCCceEEEEc
Confidence 55 33543 44444321 1234577776
No 475
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=46.63 E-value=2.9e+02 Score=26.99 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=40.1
Q ss_pred eEEEEEcCCCeEEEEEeecC------CceeEEEEEecCC----CeEEEE-eCCCcEEEEECCCCeEEEEcccCC
Q 016446 166 PLKILSIEDGTVLKVFYHLL------HRNKKVDFIEQFN----EKLLVK-QENENLQILDVRNAELMEVSRTEF 228 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~------~~~~~v~f~~~~~----~~l~~~-s~D~tIklWd~~tg~~~~~l~gh~ 228 (389)
.|-.||++|+++++++.... .....+.+-..++ ...-++ +...-|-++|+++|+-.+.+.++.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~ 108 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSF 108 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGC
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCc
Confidence 45678999999998886431 2234555543222 222233 355689999999999988877653
No 476
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=45.88 E-value=3.2e+02 Score=27.23 Aligned_cols=109 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEEcccCC--CceEEEEEcCCCcEEEEEcCCeEEEEeC-CCcEEEEeccCc-CCcCC
Q 016446 198 NEKLLVKQENENLQILDVRNAELMEVSRTEF--MTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHL-LWHPD 273 (389)
Q Consensus 198 ~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~--~~v~sv~fspdg~~laS~sD~tIklWd~-~G~~l~tl~gh~-~~~~~ 273 (389)
++++.++..|+.|.-.|.++|+.+-....-. ..+..=.+-.+|+++++..|+.+...|. +|+++-..+... ..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~--- 144 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPY--- 144 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeE---
Q ss_pred CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 274 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
+.+-++-.|+...+. +.|+.+.--|..||+.+.+..
T Consensus 145 --~~~~~v~~~~~v~~~------------s~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 145 --YASPPVVGDGTVYVG------------TDDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred --EecCcEEcCcEEEEe------------cCCCeEEEEEccCCcEEEEEe
No 477
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=45.48 E-value=1.9e+02 Score=30.10 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred CceEEEEEcCCCcEEEEEc-CCeEEEE-----------------------eCCCcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 229 MTPSAFIFLYENQLFLTFR-NRTVAVW-----------------------NFRGELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~s-D~tIklW-----------------------d~~G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
...+.+++.|||.++++.. -+.+++. ++...+-..|...... -..+++..+
T Consensus 67 e~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~-----~~~~a~~~~ 141 (399)
T COG2133 67 EHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLV-----YFGISEPGG 141 (399)
T ss_pred cCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEeccccccccee-----eeEEEeecC
Q ss_pred CCEEEEEecCCCcccccCCCCCeEEEEeCCCC--------eEEEEecCCCCCCCcccccCCCCCCCccccccccceeccc
Q 016446 285 QDLIISYCKAEPEDQWMEGSAGSINVSSILTG--------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 356 (389)
Q Consensus 285 G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg--------~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (389)
+-+.++ ++-++.+..| ..+.-|.++..|
T Consensus 142 ~~~~~n----------------~~~~~~~~~g~~~l~~~~~i~~~lP~~~~H---------------------------- 177 (399)
T COG2133 142 GLYVAN----------------RVAIGRLPGGDTKLSEPKVIFRGIPKGGHH---------------------------- 177 (399)
T ss_pred CceEEE----------------EEEEEEcCCCccccccccEEeecCCCCCCc----------------------------
Q ss_pred ccccCCEEEEEECCCCCEEEEecC
Q 016446 357 GEALEDITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 357 ~~~~~~V~svafSpdg~~LaSgs~ 380 (389)
+=..|+|+|||+..+|-++
T Consensus 178 -----~g~~l~f~pDG~Lyvs~G~ 196 (399)
T COG2133 178 -----FGGRLVFGPDGKLYVTTGS 196 (399)
T ss_pred -----CcccEEECCCCcEEEEeCC
No 478
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=45.21 E-value=3.4e+02 Score=27.45 Aligned_cols=129 Identities=12% Similarity=0.160 Sum_probs=73.1
Q ss_pred CceeEEEecCCCe--EEEEecCCCeEEEEeC--CCCeEEEEecCCcEEE--EEEc--C---CceEEEEecCCCCeeEEEE
Q 016446 102 WPGFVEFDDVNGK--VLTYSAQDSIYKVFDL--KNYTMLYSISDKHVQE--IKIS--P---GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 102 ~~~~v~Fs~pdG~--~Las~s~D~tiklWdl--~~g~~l~tl~~~~V~~--vafS--~---g~~la~~~~~s~d~tiklW 170 (389)
|--.+|+- ||+ |+...|.-.+..-|.- .+|=++..+..+.|-. ++|= | ++.|-.+ ++..+.+.-.
T Consensus 153 HLNGlA~~--~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWhdgrLwvl--dsgtGev~~v 228 (335)
T TIGR03032 153 HLNGMALD--DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWYQGKLWLL--NSGRGELGYV 228 (335)
T ss_pred eecceeee--CCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEeCCeEEEE--ECCCCEEEEE
Confidence 33357774 564 5555565555666642 2344554444333322 2221 2 3344344 4555788888
Q ss_pred EcCCCeEE--EEEeecCCceeEEEEEecCCCeEEEE-e---CCC----------------cEEEEECCCCeEEEEc--cc
Q 016446 171 SIEDGTVL--KVFYHLLHRNKKVDFIEQFNEKLLVK-Q---ENE----------------NLQILDVRNAELMEVS--RT 226 (389)
Q Consensus 171 d~~tG~~l--~tl~~~~~~~~~v~f~~~~~~~l~~~-s---~D~----------------tIklWd~~tg~~~~~l--~g 226 (389)
|.++|+.. ..++ +....++|. |..++++ | +++ =|.+-|+.||+.+..+ ++
T Consensus 229 D~~~G~~e~Va~vp---G~~rGL~f~---G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg 302 (335)
T TIGR03032 229 DPQAGKFQPVAFLP---GFTRGLAFA---GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEG 302 (335)
T ss_pred cCCCCcEEEEEECC---CCCccccee---CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCC
Confidence 98888544 4444 555677775 5555554 3 233 3567788888877764 55
Q ss_pred CCCceEEEEEcCCC
Q 016446 227 EFMTPSAFIFLYEN 240 (389)
Q Consensus 227 h~~~v~sv~fspdg 240 (389)
--..+..|+..|+=
T Consensus 303 ~v~EifdV~vLPg~ 316 (335)
T TIGR03032 303 VIEEIYDVAVLPGV 316 (335)
T ss_pred ceeEEEEEEEecCC
Confidence 55667777777763
No 479
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=44.84 E-value=62 Score=34.68 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=14.9
Q ss_pred CCEEEEEECCCCCEEEE
Q 016446 361 EDITSLFYDEERNEIYT 377 (389)
Q Consensus 361 ~~V~svafSpdg~~LaS 377 (389)
..++.++|+|||++|.-
T Consensus 502 aE~tG~~fspDg~tlFv 518 (524)
T PF05787_consen 502 AEITGPCFSPDGRTLFV 518 (524)
T ss_pred cccccceECCCCCEEEE
Confidence 47999999999999865
No 480
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=42.18 E-value=61 Score=34.79 Aligned_cols=61 Identities=3% Similarity=-0.101 Sum_probs=51.2
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 016446 197 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR 257 (389)
Q Consensus 197 ~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~ 257 (389)
..+++|++|.-|-|||+|--.-+....|.+-...|.-|..+.+|+.++..+..++-|=|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 3579999999999999997655555667888889999999999999888888888888863
No 481
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=41.06 E-value=35 Score=25.26 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=16.0
Q ss_pred eeEEEECCCCCEEEEEec
Q 016446 276 TNNIYITSDQDLIISYCK 293 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~ 293 (389)
++++++-||||+|+.|+.
T Consensus 3 ~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYV 20 (55)
T ss_pred eEEEEECCCCcEEEEEEe
Confidence 589999999999999864
No 482
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=39.75 E-value=96 Score=24.99 Aligned_cols=28 Identities=29% Similarity=0.255 Sum_probs=23.0
Q ss_pred eEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 277 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 277 ~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+.|++|||+++|..++. ..+.|+++..+
T Consensus 57 NGI~~s~~~k~lyVa~~----------~~~~I~vy~~~ 84 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASS----------LAHSIHVYKRH 84 (86)
T ss_pred ceEEEcCCCCEEEEEec----------cCCeEEEEEec
Confidence 79999999999988764 45889888754
No 483
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=39.65 E-value=76 Score=34.03 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCcEEEEEc-CC-eEE--------------------EE--eCC-CcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 230 TPSAFIFLYENQLFLTFR-NR-TVA--------------------VW--NFR-GELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 230 ~v~sv~fspdg~~laS~s-D~-tIk--------------------lW--d~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
.+--++|.|+|++++.-. .+ ... +| +.. |++.+-+.+.. +|.+..++|+||
T Consensus 437 sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~----gaE~tG~~fspD 512 (524)
T PF05787_consen 437 SPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPN----GAEITGPCFSPD 512 (524)
T ss_pred CCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCC----CcccccceECCC
Confidence 455588999999887653 22 211 11 122 44444444443 467899999999
Q ss_pred CCEEEEE
Q 016446 285 QDLIISY 291 (389)
Q Consensus 285 G~~laS~ 291 (389)
|++|...
T Consensus 513 g~tlFvn 519 (524)
T PF05787_consen 513 GRTLFVN 519 (524)
T ss_pred CCEEEEE
Confidence 9998863
No 484
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=39.28 E-value=74 Score=25.65 Aligned_cols=32 Identities=6% Similarity=0.170 Sum_probs=25.4
Q ss_pred cCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC
Q 016446 226 TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR 257 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~ 257 (389)
..-...+.|+++|++++|--++ .+.|.+++.+
T Consensus 51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3345678899999999887775 8999998764
No 485
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=38.27 E-value=43 Score=35.90 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=41.6
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEE
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLIT 61 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s 61 (389)
+.+||++++.|-|||+|+- |..-+|.-+.-.+.|.-|..+.+|+.|+.
T Consensus 573 sGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred CceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEE
Confidence 7899999999999999995 98888866666689999999999996655
No 486
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=38.02 E-value=1.2e+02 Score=24.65 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=32.9
Q ss_pred CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc---CCeEEEE
Q 016446 206 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVW 254 (389)
Q Consensus 206 ~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s---D~tIklW 254 (389)
.+|.+--||..|++..-.+.+-. ..+.|+++||++.|+-+- -+-.|.|
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 56778889999998766555543 689999999999777663 4444554
No 487
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=37.50 E-value=32 Score=25.31 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=12.3
Q ss_pred EEEECCCCCEEEEE
Q 016446 278 NIYITSDQDLIISY 291 (389)
Q Consensus 278 sv~fSpdG~~laS~ 291 (389)
-++.+|||++|+.|
T Consensus 35 i~Y~~~dg~yli~G 48 (57)
T PF10411_consen 35 ILYVDEDGRYLIQG 48 (57)
T ss_dssp EEEEETTSSEEEES
T ss_pred EEEEcCCCCEEEEe
Confidence 57889999999996
No 488
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=35.63 E-value=3.5e+02 Score=24.84 Aligned_cols=14 Identities=14% Similarity=0.541 Sum_probs=10.2
Q ss_pred CCeEEEEeCCCCeEE
Q 016446 305 AGSINVSSILTGKCL 319 (389)
Q Consensus 305 D~tIklWd~~tg~~l 319 (389)
+|.||+=| ..|+.+
T Consensus 162 ~gr~r~kd-~~g~~~ 175 (179)
T PF07202_consen 162 SGRVRIKD-KDGNVI 175 (179)
T ss_pred CCcEEEec-CCCCEE
Confidence 48888888 557765
No 489
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=35.30 E-value=2.1e+02 Score=29.48 Aligned_cols=119 Identities=12% Similarity=0.108 Sum_probs=71.1
Q ss_pred CceEEEEEcCCC-cEEEEEcCCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCC
Q 016446 229 MTPSAFIFLYEN-QLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 229 ~~v~sv~fspdg-~~laS~sD~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D 305 (389)
+.+--++|...| +++++ |.-.=||.+. |++...+.++....+-.-.+++.+.|+|....+-|.+.
T Consensus 115 GRPLGl~f~~~ggdL~Va--DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk---------- 182 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVA--DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSK---------- 182 (376)
T ss_pred CCcceEEeccCCCeEEEE--ecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccc----------
Confidence 456678999888 66554 4444477764 66666666555433323357889999999988855431
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEe
Q 016446 306 GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 378 (389)
Q Consensus 306 ~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSg 378 (389)
||. .+.+..+-.|+. +|.--+.|.+.+-...+-++|.--+.|+.|||+..++.+
T Consensus 183 -----~~~--rd~~~a~l~g~~------------~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~ 236 (376)
T KOG1520|consen 183 -----YDR--RDFVFAALEGDP------------TGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVA 236 (376)
T ss_pred -----cch--hheEEeeecCCC------------ccceEEecCcccchhhhhhcccccccccCCCCCCEEEEE
Confidence 332 122222222221 222234444444444556666778889999999987765
No 490
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=34.77 E-value=61 Score=21.42 Aligned_cols=27 Identities=15% Similarity=0.173 Sum_probs=21.5
Q ss_pred EEEEEecCceEEEEecccceeeeeeec
Q 016446 15 IVFALAHSGVCAAFSRETNRRICFLNV 41 (389)
Q Consensus 15 ~~a~~~~~gtiklW~~~tg~~l~tl~~ 41 (389)
.|.+.+.+|.+...|..||+.+=..+-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 355569999999999999998866554
No 491
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=34.55 E-value=99 Score=35.32 Aligned_cols=68 Identities=7% Similarity=0.016 Sum_probs=44.0
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceee-eeeeEeEeccC
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC-RSTKIEYIRRG 86 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~-~~~~l~~i~~g 86 (389)
.++....-..+.+.+=|.. |...+.+.-.+...|.+=+|||||+.||-+..+-+ +.. -.|.+++|.+-
T Consensus 319 tkiAfv~~~~~~L~~~D~d-G~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~-----~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYT-KGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEG-----LPGKSSVYVRNLNAS 387 (912)
T ss_pred eeEEEEEcCCCeEEEEecC-CCCceEEEecCCCceecCcCCCCCCEEEEEEeecC-----CCCCceEEEEehhcc
Confidence 5555555445677788875 76666662223589999999999999999443333 111 24777777443
No 492
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=33.42 E-value=4.8e+02 Score=25.70 Aligned_cols=70 Identities=11% Similarity=0.233 Sum_probs=47.7
Q ss_pred cEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce---eEEEEEecCCCeEEE-EeCCCcEEEEEC
Q 016446 143 HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN---KKVDFIEQFNEKLLV-KQENENLQILDV 215 (389)
Q Consensus 143 ~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~---~~v~f~~~~~~~l~~-~s~D~tIklWd~ 215 (389)
.+++|..- +|.+|+++-.. .+|-+-|-+||+.+-.|.+....- ....|+-+.+-.++. +..+++|.|.|=
T Consensus 145 HiNsV~~~~~G~yLiS~R~~---~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNT---STIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecCCccEEEEeccc---CEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 57888777 79999766333 689999999999999997542222 223354444445554 357889999986
No 493
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.40 E-value=2.2e+02 Score=30.45 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc
Q 016446 229 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 259 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~s-D~tIklWd~~G~ 259 (389)
++|.++.||||.+.||.-. |.+|.+.++.|.
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 3788999999999999998 999999999643
No 494
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=32.57 E-value=1.4e+02 Score=19.71 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.5
Q ss_pred CCCeEEEEeCCCcEEEEECCC
Q 016446 197 FNEKLLVKQENENLQILDVRN 217 (389)
Q Consensus 197 ~~~~l~~~s~D~tIklWd~~t 217 (389)
.++.+.+++.|+++...|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 478899999999999998864
No 495
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=31.71 E-value=6.7e+02 Score=27.66 Aligned_cols=68 Identities=12% Similarity=0.251 Sum_probs=40.8
Q ss_pred EEeecCCceeEEEEEecCCCeEEEEe---CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC----CcEEEEEc-CCeE
Q 016446 180 VFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE----NQLFLTFR-NRTV 251 (389)
Q Consensus 180 tl~~~~~~~~~v~f~~~~~~~l~~~s---~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd----g~~laS~s-D~tI 251 (389)
.|...-|++..++|- ||.+++-.. .+|.+|.=|- ..-|.+..|..+.|.|- --.|+... .+.|
T Consensus 14 aL~qAiHPvhGlaWT--DGkqVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhV 84 (671)
T PF15390_consen 14 ALHQAIHPVHGLAWT--DGKQVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHV 84 (671)
T ss_pred HHHhhhccccceEec--CCCEEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEEeccceE
Confidence 344455788888884 454443332 3444443221 12366678999999885 32344444 8889
Q ss_pred EEEeC
Q 016446 252 AVWNF 256 (389)
Q Consensus 252 klWd~ 256 (389)
-+|.+
T Consensus 85 tVWqL 89 (671)
T PF15390_consen 85 TVWQL 89 (671)
T ss_pred EEEEe
Confidence 99986
No 496
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=31.35 E-value=3.7e+02 Score=23.73 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=61.3
Q ss_pred EEecCCCeEEEEecCCCeEEEEeCCCC--------eEEEEec-CCcEEEEEEc------CCceEEEEecCCCCeeEEEEE
Q 016446 107 EFDDVNGKVLTYSAQDSIYKVFDLKNY--------TMLYSIS-DKHVQEIKIS------PGIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 107 ~Fs~pdG~~Las~s~D~tiklWdl~~g--------~~l~tl~-~~~V~~vafS------~g~~la~~~~~s~d~tiklWd 171 (389)
.|+ ....-||.+..-+.|-|-+.... ..+..|. ...|.+++=. ..+.|+.++.. ++-.+|
T Consensus 5 kfD-G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t----~llaYD 79 (136)
T PF14781_consen 5 KFD-GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT----SLLAYD 79 (136)
T ss_pred EeC-CCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc----eEEEEE
Confidence 354 44556777777777777765422 2344554 4566666443 25567676433 688999
Q ss_pred cCCCeEE--EEEeecCCceeEEEEEecC--CCeEEEEeCCCcEEEEECCCCeEEE
Q 016446 172 IEDGTVL--KVFYHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNAELME 222 (389)
Q Consensus 172 ~~tG~~l--~tl~~~~~~~~~v~f~~~~--~~~l~~~s~D~tIklWd~~tg~~~~ 222 (389)
++.-.-+ +.++ ..++.+.+-... ++-++..+.+..|+=+|.+..|..-
T Consensus 80 V~~N~d~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 80 VENNSDLFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred cccCchhhhhhCc---cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 8875443 2232 666777664221 2455666666666666665444433
No 497
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=30.55 E-value=87 Score=21.09 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.4
Q ss_pred CCEEEEEECCCCCEEEEecCCC
Q 016446 361 EDITSLFYDEERNEIYTGNRHG 382 (389)
Q Consensus 361 ~~V~svafSpdg~~LaSgs~D~ 382 (389)
....+|+++++|...++|..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 3688999999999999998776
No 498
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=29.91 E-value=1e+02 Score=19.56 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=21.8
Q ss_pred ccEEEEEeeccEEEEEecCceEEEEe
Q 016446 4 TKVIEIVAARDIVFALAHSGVCAAFS 29 (389)
Q Consensus 4 ~~v~~i~~~~~~~a~~~~~gtiklW~ 29 (389)
+.|..|..+...+|++...+.+|+|.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 45788888899999999889999874
No 499
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=29.10 E-value=1.4e+02 Score=32.34 Aligned_cols=18 Identities=6% Similarity=0.303 Sum_probs=15.6
Q ss_pred CCEEEEEECCCCCEEEEe
Q 016446 361 EDITSLFYDEERNEIYTG 378 (389)
Q Consensus 361 ~~V~svafSpdg~~LaSg 378 (389)
..++..+|||||++|.-+
T Consensus 554 ~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 554 CEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred ceeecceeCCCCceEEEE
Confidence 478999999999998755
No 500
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=28.54 E-value=71 Score=28.11 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=34.2
Q ss_pred EEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEE
Q 016446 6 VIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIR 48 (389)
Q Consensus 6 v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~ 48 (389)
...|+.+.++.+....||.+.+++..+|+.+.++...+...|+
T Consensus 34 ~a~vv~~r~l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvr 76 (135)
T TIGR03054 34 PAAVVASLWLVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVR 76 (135)
T ss_pred CCCcEEEEEEEEecCCCCeEEEEECCCCCEEEEecCCCCchhh
Confidence 3456777888888899999999998899999998776644444
Done!