BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016449
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRR 79
D YE+LGVSR +D+++K AYR++ALK+HPDKN + P A + FK + +Y +LS+P+KR+
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 80 QYDTAG 85
QYD G
Sbjct: 67 QYDQFG 72
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQY 81
Y VLG+ +N T +IK +YRK+ALKYHPDKN ++P AAD FKE+ ++ IL+D KR Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 82 DTAG 85
D G
Sbjct: 80 DKYG 83
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKR 78
+D Y+ LG++R +D+EIK AYR+ AL+YHPDKN +P A + FKE+ +Y++LSDP KR
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 79 RQYDTAGFEAV 89
+D G E +
Sbjct: 62 EIFDRYGEEGL 72
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDK 77
++D YE+LGVS+ ++EI+ AY+++A+KYHPD+N D A FKE+ +Y +L+D K
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 78 RRQYDTAGFEA 88
R YD G A
Sbjct: 62 RAAYDQYGHAA 72
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQY 81
Y+VLGV N T +E+K AYRK+ALKYHPDKN N+ + FK+++ +Y +LSD KR Y
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELY 65
Query: 82 DTAG 85
D G
Sbjct: 66 DKGG 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQY 81
Y+VLGV + +D E+K AYRKMALK+HPDKN P A+ FK+++ +Y +LSD KR+ Y
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKN---PDGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 82 DTAGFE 87
D G E
Sbjct: 68 DQGGEE 73
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%)
Query: 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRR 79
D Y++LGV RN + +EIK AY ++A KYHPD N +DP A + F ++ +Y +LSD KR+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 80 QYDTAG 85
QYD G
Sbjct: 68 QYDAYG 73
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDK 77
++D YE+LGVS+ ++EI+ AY+++A+KYHPD+N D A FKE+ +Y +L+D K
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 78 RRQYDTAGFEA 88
R YD G A
Sbjct: 62 RAAYDQYGHAA 72
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDK 77
++D YE+LGVS+ ++EI+ AY+++A+KYHPD+N D A FKE+ +Y +L+D K
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 78 RRQYDTAGFEA 88
R YD G A
Sbjct: 62 RAAYDQYGHAA 72
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQY 81
Y++LGVS + +QE+K YRK ALKYHPDK D + FKE++ ++ IL+DP KR Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIY 67
Query: 82 DTAGFEAV 89
D G EA
Sbjct: 68 DQYGLEAA 75
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQY 81
Y++LGV ++ ++++IK A+ K+A+KYHPDKN + P A F+E+ +Y LSD ++R++Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKEY 68
Query: 82 DTAGFEA 88
DT G A
Sbjct: 69 DTLGHSA 75
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 68.2 bits (165), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRR 79
DPY VLGVSR + +IK AY+K+A ++HPDKN DP A D F +++ +Y ILS+ +KR
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 80 QYDTAG 85
YD G
Sbjct: 77 NYDHYG 82
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQY 81
Y +LGVS+ + +EI+ A++K+ALK HPDKN N+P A F ++ +Y +L D D R++Y
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83
Query: 82 DTAG 85
D G
Sbjct: 84 DKYG 87
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQY 81
Y +LGVS+ + +EI+ A++K+ALK HPDKN N+P A F ++ +Y +L D D R++Y
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 82 DTAG 85
D G
Sbjct: 65 DKYG 68
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAAD-IFKEVTFSYNILSDPDKRRQ 80
YEVLGV + + ++IK AYRK+AL++HPDKN ++ A+ FK V+ +Y +LSD KR
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 81 YDTAGFEA 88
YD AG ++
Sbjct: 72 YDRAGCDS 79
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNA-NDPVAADIFKEVTFSYNILSDPDKR 78
D YEVL V R + + IK AYRK+ALK+HPDKN N A FK+V +Y +LSD KR
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 79 RQYDTAG 85
YD G
Sbjct: 70 DIYDRYG 76
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNA-NDPVAADIFKEVTFSYNILSDPDKRRQ 80
YE+L V R+ + +IK AYR+ AL++HPDKN N A FKEV +Y +LSD KR
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 81 YDTAGFEAV 89
YD G E +
Sbjct: 65 YDRYGREGL 73
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAN---DPVAADIFKEVTFSYNILSD 74
+RD Y++LGV RN QEI AYRK+AL++HPD N A F ++ + +LSD
Sbjct: 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD 440
Query: 75 PDKRRQYD 82
P+ R+++D
Sbjct: 441 PEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAN---DPVAADIFKEVTFSYNILSD 74
+RD Y++LGV RN QEI AYRK+AL++HPD N A F ++ + +LSD
Sbjct: 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD 440
Query: 75 PDKRRQYD 82
P+ R+++D
Sbjct: 441 PEMRKKFD 448
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 14 GKQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILS 73
G +L+ D Y ++GV + IK+AYR++A KYHPD + +P A FKEV ++ +LS
Sbjct: 1 GSELK-DYYAIMGVKPTDDLKTIKTAYRRLARKYHPD-VSKEPDAEARFKEVAEAWEVLS 58
Query: 74 DPDKRRQYD 82
D +R +YD
Sbjct: 59 DEQRRAEYD 67
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 51.2 bits (121), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQY 81
Y++LGV T +IK+AY + YHPD+N+ AA+ F ++ +Y +L RR+Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 82 D 82
D
Sbjct: 80 D 80
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKR 78
+D Y +LGV + IK+AYR++A KYHPD + + A FK++ ++ +L D +R
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAK-FKDLAEAWEVLKDEQRR 86
Query: 79 RQYD 82
+YD
Sbjct: 87 AEYD 90
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADI------FKEVTFSYNI 71
++D Y +LG + ++K Y+K+ L YHPDK + D A + F E+ ++ I
Sbjct: 9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68
Query: 72 LSDPDKRRQYD 82
L + + +R+YD
Sbjct: 69 LGNEETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 15 KQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADI------FKEVTFS 68
+ L++D Y +LG + ++K Y+K+ L YHPDK + D A + F E+ +
Sbjct: 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQA 71
Query: 69 YNILSDPDKRRQYD 82
+ IL + + +++YD
Sbjct: 72 WKILGNEETKKKYD 85
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 9 ERTDAGKQLR--RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVT 66
E+ DA +++R +D +++LGV + E+ AYRK+A+ HPDK P + D FK V
Sbjct: 15 EQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVV 73
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRR 79
D Y +LG + ++I + ++ AL+ HPDK+ +P A + F+++ + IL++ + R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 80 QYD 82
+YD
Sbjct: 81 RYD 83
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 22 YEVLGVSRNCTD-QEIKSAYRKMALKYHPDKNANDP---VAADIFKEVTFSYNILSDPDK 77
Y+VL V+R D Q++ AYR +A K+HPD+ N +A + F+ + +Y L D +
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 78 RRQYD 82
+ YD
Sbjct: 78 KTNYD 82
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDP---VAADIFKEVTFSYN 70
++ +G++ T +++K YRK L HPDK P A IF E+ +++
Sbjct: 52 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 103
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDP---VAADIFKEVTFSYN 70
++ +G + T +++K YRK L HPDK P A IF E+ +++
Sbjct: 39 WKPVGXADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWS 90
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDP---VAADIFKEVTFSYN 70
++ +G++ T +++K YRK L HPDK P A IF E+ +++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 171
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 33 DQEIKSAYRKMALKYHPDKNA-NDPVAADIFKEVTFSYNIL 72
+ E K R++ LK+HPDKN N +A ++FK + N L
Sbjct: 30 ESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70
>pdb|3U52|A Chain A, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
pdb|3U52|B Chain B, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
Length = 511
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 297 YREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHA 330
Y +V QF+ +R A +MQAIDEL + + HA
Sbjct: 115 YSKVGRQFSGAGARVACQMQAIDELRHSQTQQHA 148
>pdb|2INP|A Chain A, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
pdb|2INP|B Chain B, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
Length = 494
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 297 YREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHA 330
Y +V QF+ +R A +MQAIDEL + + HA
Sbjct: 110 YSKVGRQFSGAGARVACQMQAIDELRHSQTQQHA 143
>pdb|1XQ9|A Chain A, Structure Of Phosphoglycerate Mutase From Plasmodium
Falciparum At 2.6 Resolution
pdb|1XQ9|B Chain B, Structure Of Phosphoglycerate Mutase From Plasmodium
Falciparum At 2.6 Resolution
Length = 258
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 249 LDGFQPCEITELKAGTHVFAVYEEKENLRAVEAEILSKRAELSK 292
LD ++ EL T V VYE ENL+ ++ L EL K
Sbjct: 203 LDNLSEADVLELNIPTGVPLVYELDENLKPIKHYYLLDSEELKK 246
>pdb|3KKK|A Chain A, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|B Chain B, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|C Chain C, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|D Chain D, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
Length = 258
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 249 LDGFQPCEITELKAGTHVFAVYEEKENLRAVEAEILSKRAELSK 292
LD ++ EL T V VYE ENL+ ++ L EL K
Sbjct: 203 LDNLSEADVLELNIPTGVPLVYELDENLKPIKHYYLLDSEELKK 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,731,814
Number of Sequences: 62578
Number of extensions: 347592
Number of successful extensions: 1304
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 42
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)