Query 016449
Match_columns 389
No_of_seqs 285 out of 1937
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:57:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0713 Molecular chaperone (D 100.0 1.5E-49 3.2E-54 389.5 6.8 295 14-344 11-326 (336)
2 COG0484 DnaJ DnaJ-class molecu 100.0 2.3E-31 5E-36 266.5 12.7 137 17-156 2-151 (371)
3 KOG0712 Molecular chaperone (D 99.9 1.6E-27 3.5E-32 236.1 8.7 152 18-183 3-174 (337)
4 PRK14296 chaperone protein Dna 99.9 3.2E-26 7E-31 231.3 11.4 136 18-156 3-158 (372)
5 PRK14288 chaperone protein Dna 99.9 3.6E-26 7.9E-31 230.6 10.1 136 18-156 2-149 (369)
6 PRK14276 chaperone protein Dna 99.9 2.3E-25 5.1E-30 225.5 11.8 157 18-177 3-188 (380)
7 PRK14287 chaperone protein Dna 99.9 2.9E-25 6.3E-30 224.2 11.8 155 18-177 3-180 (371)
8 PTZ00037 DnaJ_C chaperone prot 99.9 2.7E-25 5.8E-30 227.8 11.7 152 15-181 24-194 (421)
9 PRK14297 chaperone protein Dna 99.9 4.9E-25 1.1E-29 223.1 12.6 137 18-156 3-157 (380)
10 PRK14285 chaperone protein Dna 99.9 3.5E-25 7.6E-30 223.2 11.4 138 18-157 2-156 (365)
11 PRK14286 chaperone protein Dna 99.9 3E-25 6.5E-30 224.2 10.9 138 18-157 3-160 (372)
12 PRK14298 chaperone protein Dna 99.9 5.3E-25 1.1E-29 222.8 11.6 161 18-182 4-187 (377)
13 PRK14277 chaperone protein Dna 99.9 9.7E-25 2.1E-29 221.4 12.1 158 18-178 4-198 (386)
14 PRK14282 chaperone protein Dna 99.9 8.7E-25 1.9E-29 220.5 11.4 158 18-177 3-194 (369)
15 PRK14278 chaperone protein Dna 99.9 1.5E-24 3.2E-29 219.6 12.8 135 19-157 3-149 (378)
16 PRK14280 chaperone protein Dna 99.9 1.6E-24 3.4E-29 219.2 11.6 156 18-176 3-184 (376)
17 TIGR02349 DnaJ_bact chaperone 99.9 2.2E-24 4.7E-29 216.1 11.8 155 20-177 1-185 (354)
18 PRK14294 chaperone protein Dna 99.9 2.2E-24 4.7E-29 217.4 10.7 137 18-156 3-153 (366)
19 PRK14301 chaperone protein Dna 99.9 4.8E-24 1E-28 215.5 12.1 137 18-156 3-153 (373)
20 PRK14279 chaperone protein Dna 99.9 5.7E-24 1.2E-28 216.3 11.8 138 18-157 8-183 (392)
21 PRK10767 chaperone protein Dna 99.9 6.8E-24 1.5E-28 214.0 11.8 136 18-156 3-151 (371)
22 PRK14281 chaperone protein Dna 99.9 1.3E-23 2.8E-28 214.0 11.8 158 18-177 2-204 (397)
23 PRK14290 chaperone protein Dna 99.9 2.3E-23 5E-28 209.9 12.2 137 19-157 3-159 (365)
24 PRK14284 chaperone protein Dna 99.9 1.2E-23 2.7E-28 213.7 9.4 136 19-156 1-167 (391)
25 PRK14295 chaperone protein Dna 99.9 2.2E-23 4.7E-28 211.9 10.8 137 18-156 8-175 (389)
26 PRK14283 chaperone protein Dna 99.9 1.9E-23 4.1E-28 211.4 10.4 156 18-176 4-187 (378)
27 PRK14291 chaperone protein Dna 99.9 5.4E-23 1.2E-27 208.4 11.5 136 18-156 2-165 (382)
28 KOG0717 Molecular chaperone (D 99.9 2.1E-23 4.6E-28 211.4 6.1 231 14-335 3-257 (508)
29 PRK14293 chaperone protein Dna 99.9 2.5E-22 5.4E-27 203.0 11.8 155 18-177 2-185 (374)
30 PRK14289 chaperone protein Dna 99.9 2.1E-22 4.5E-27 204.3 10.9 157 18-176 4-195 (386)
31 PRK14299 chaperone protein Dna 99.9 1.2E-21 2.5E-26 192.1 12.7 122 18-141 3-151 (291)
32 PRK14292 chaperone protein Dna 99.9 9.1E-22 2E-26 198.6 12.0 133 19-156 2-148 (371)
33 PRK14300 chaperone protein Dna 99.9 7.6E-22 1.7E-26 199.4 10.9 136 19-157 3-155 (372)
34 PRK10266 curved DNA-binding pr 99.8 4.8E-20 1.1E-24 181.8 8.2 120 19-140 4-138 (306)
35 KOG0716 Molecular chaperone (D 99.7 1E-18 2.3E-23 167.9 4.6 76 15-90 27-102 (279)
36 KOG0715 Molecular chaperone (D 99.7 3.7E-18 8E-23 167.6 6.9 108 18-137 42-155 (288)
37 PTZ00341 Ring-infected erythro 99.7 5.5E-18 1.2E-22 184.7 7.2 78 13-91 567-644 (1136)
38 KOG0691 Molecular chaperone (D 99.7 3E-18 6.4E-23 168.4 4.5 72 18-89 4-75 (296)
39 PF00226 DnaJ: DnaJ domain; I 99.7 1.2E-17 2.7E-22 127.5 2.2 63 20-82 1-64 (64)
40 KOG0719 Molecular chaperone (D 99.7 3.2E-17 7E-22 154.8 5.4 110 15-137 10-121 (264)
41 KOG0718 Molecular chaperone (D 99.7 2.5E-17 5.4E-22 167.7 3.5 77 15-91 5-84 (546)
42 smart00271 DnaJ DnaJ molecular 99.6 1.4E-15 3E-20 114.2 5.3 59 19-77 1-60 (60)
43 TIGR03835 termin_org_DnaJ term 99.6 1.3E-15 2.9E-20 163.2 6.3 89 19-116 2-90 (871)
44 PHA03102 Small T antigen; Revi 99.6 1.4E-15 3.1E-20 136.8 5.1 84 19-116 5-90 (153)
45 COG2214 CbpA DnaJ-class molecu 99.6 2.7E-15 5.8E-20 135.1 6.3 69 17-85 4-73 (237)
46 KOG0624 dsRNA-activated protei 99.6 1.5E-15 3.3E-20 151.0 3.5 76 15-91 390-468 (504)
47 cd06257 DnaJ DnaJ domain or J- 99.6 4.7E-15 1E-19 109.3 5.2 55 20-74 1-55 (55)
48 KOG0721 Molecular chaperone (D 99.5 2.1E-14 4.5E-19 134.7 4.8 73 15-87 95-167 (230)
49 KOG0714 Molecular chaperone (D 99.4 3.2E-13 6.9E-18 127.6 6.0 99 18-116 2-106 (306)
50 KOG0550 Molecular chaperone (D 99.4 2.6E-13 5.7E-18 137.4 3.6 70 15-84 369-439 (486)
51 PRK05014 hscB co-chaperone Hsc 99.4 5.1E-13 1.1E-17 122.2 4.9 65 19-83 1-72 (171)
52 PRK01356 hscB co-chaperone Hsc 99.3 8.5E-13 1.8E-17 120.3 3.8 66 19-84 2-72 (166)
53 PRK03578 hscB co-chaperone Hsc 99.3 1.5E-12 3.2E-17 119.8 5.0 66 18-83 5-77 (176)
54 KOG0722 Molecular chaperone (D 99.3 7.9E-13 1.7E-17 126.7 2.7 67 17-84 31-97 (329)
55 PRK00294 hscB co-chaperone Hsc 99.3 3.2E-12 7E-17 117.3 5.3 67 17-83 2-75 (173)
56 KOG0720 Molecular chaperone (D 99.3 1.8E-12 3.9E-17 132.5 3.6 68 17-85 233-300 (490)
57 PRK09430 djlA Dna-J like membr 99.1 5.1E-11 1.1E-15 116.1 4.2 59 16-74 197-262 (267)
58 PHA02624 large T antigen; Prov 99.1 8.8E-11 1.9E-15 125.0 5.5 60 18-81 10-71 (647)
59 PTZ00100 DnaJ chaperone protei 99.1 8.1E-11 1.8E-15 101.5 3.6 53 17-73 63-115 (116)
60 COG5407 SEC63 Preprotein trans 98.8 1.2E-09 2.6E-14 111.8 2.3 72 17-88 96-172 (610)
61 KOG1150 Predicted molecular ch 98.8 2.9E-09 6.3E-14 99.4 3.5 69 13-81 47-116 (250)
62 PRK01773 hscB co-chaperone Hsc 98.8 6.4E-09 1.4E-13 95.6 4.5 65 19-83 2-73 (173)
63 COG5269 ZUO1 Ribosome-associat 98.7 6.9E-09 1.5E-13 100.7 4.5 95 16-115 40-139 (379)
64 TIGR00714 hscB Fe-S protein as 98.7 1.1E-08 2.4E-13 92.5 4.4 54 31-84 3-61 (157)
65 KOG1789 Endocytosis protein RM 98.0 5.8E-06 1.3E-10 91.9 4.0 52 19-73 1281-1336(2235)
66 KOG0568 Molecular chaperone (D 97.8 1.7E-05 3.6E-10 76.1 3.5 58 16-74 44-102 (342)
67 KOG0723 Molecular chaperone (D 97.1 0.0007 1.5E-08 57.8 4.3 52 20-75 57-108 (112)
68 KOG3192 Mitochondrial J-type c 95.2 0.0078 1.7E-07 54.8 1.2 67 17-83 6-79 (168)
69 KOG0431 Auxilin-like protein a 94.8 0.026 5.7E-07 59.4 3.8 47 25-71 394-447 (453)
70 COG1076 DjlA DnaJ-domain-conta 94.7 0.014 3.1E-07 53.5 1.3 55 18-72 112-173 (174)
71 COG1076 DjlA DnaJ-domain-conta 93.2 0.03 6.4E-07 51.4 0.5 67 20-86 2-75 (174)
72 PF03656 Pam16: Pam16; InterP 83.1 1.5 3.3E-05 38.7 3.9 50 20-73 59-108 (127)
73 KOG0724 Zuotin and related mol 76.7 1.8 3.8E-05 43.4 2.5 56 30-85 3-62 (335)
74 PF13446 RPT: A repeated domai 66.4 8.7 0.00019 29.1 3.7 26 20-45 6-31 (62)
75 KOG1690 emp24/gp25L/p24 family 64.5 22 0.00049 34.0 6.7 14 257-270 94-107 (215)
76 PF02183 HALZ: Homeobox associ 58.3 40 0.00087 24.6 5.7 37 292-328 2-38 (45)
77 PF11418 Scaffolding_pro: Phi2 55.8 43 0.00093 28.0 6.1 62 274-335 12-73 (97)
78 PF14453 ThiS-like: ThiS-like 55.4 9.1 0.0002 29.4 2.0 22 248-269 33-54 (57)
79 PF11833 DUF3353: Protein of u 55.3 17 0.00036 34.4 4.2 37 28-72 1-37 (194)
80 PF14687 DUF4460: Domain of un 54.1 18 0.00038 31.3 3.8 48 29-76 4-55 (112)
81 COG1422 Predicted membrane pro 52.0 32 0.0007 32.8 5.5 38 282-319 73-111 (201)
82 PF08053 Tna_leader: Tryptopha 51.7 7.4 0.00016 24.3 0.8 14 374-387 10-23 (24)
83 PF13094 CENP-Q: CENP-Q, a CEN 51.6 95 0.0021 27.8 8.3 60 272-331 25-84 (160)
84 PF15030 DUF4527: Protein of u 51.3 88 0.0019 30.9 8.4 59 275-333 17-75 (277)
85 PF05546 She9_MDM33: She9 / Md 50.1 75 0.0016 30.5 7.6 51 274-324 32-82 (207)
86 cd07651 F-BAR_PombeCdc15_like 49.6 1.1E+02 0.0023 29.2 8.8 59 274-332 150-208 (236)
87 PF07106 TBPIP: Tat binding pr 49.0 1.2E+02 0.0027 27.3 8.7 40 272-311 70-109 (169)
88 PRK09806 tryptophanase leader 48.7 9 0.0002 24.4 0.9 15 374-388 10-24 (26)
89 PRK14154 heat shock protein Gr 47.6 91 0.002 29.9 7.9 57 258-318 40-96 (208)
90 PF08317 Spc7: Spc7 kinetochor 45.6 1.1E+02 0.0023 30.9 8.5 54 273-326 215-268 (325)
91 PRK14143 heat shock protein Gr 43.4 1.2E+02 0.0027 29.6 8.2 46 274-319 67-112 (238)
92 PRK14139 heat shock protein Gr 43.1 1.3E+02 0.0028 28.3 8.0 47 273-319 31-77 (185)
93 PHA00489 scaffolding protein 41.8 1E+02 0.0022 26.1 6.2 57 274-330 13-69 (101)
94 PRK14158 heat shock protein Gr 41.6 1.5E+02 0.0032 28.2 8.2 48 272-319 38-85 (194)
95 PF03791 KNOX2: KNOX2 domain ; 41.6 1.2E+02 0.0026 22.9 6.1 28 287-314 8-35 (52)
96 smart00787 Spc7 Spc7 kinetocho 41.4 1.3E+02 0.0028 30.5 8.2 54 273-326 210-263 (312)
97 KOG1962 B-cell receptor-associ 41.3 1.3E+02 0.0029 29.1 7.9 61 274-334 151-211 (216)
98 PRK14148 heat shock protein Gr 40.7 1.5E+02 0.0032 28.2 8.1 46 274-319 40-85 (195)
99 PRK14162 heat shock protein Gr 40.4 1.5E+02 0.0032 28.1 8.0 45 274-318 39-83 (194)
100 cd07655 F-BAR_PACSIN The F-BAR 39.9 1.7E+02 0.0036 28.5 8.6 53 274-326 168-220 (258)
101 KOG1850 Myosin-like coiled-coi 39.5 1.3E+02 0.0029 30.9 7.9 59 274-333 116-174 (391)
102 PF13851 GAS: Growth-arrest sp 39.2 2.2E+02 0.0048 26.8 9.1 20 314-333 112-131 (201)
103 PRK14147 heat shock protein Gr 38.3 1.6E+02 0.0034 27.3 7.7 44 275-318 19-62 (172)
104 KOG3990 Uncharacterized conser 38.2 44 0.00095 33.2 4.2 40 261-300 219-258 (305)
105 PHA03161 hypothetical protein; 36.9 1.2E+02 0.0026 27.8 6.5 48 274-321 61-108 (150)
106 PF10498 IFT57: Intra-flagella 36.7 1.5E+02 0.0033 30.6 8.1 62 272-336 253-314 (359)
107 PRK14145 heat shock protein Gr 36.4 2E+02 0.0043 27.4 8.2 46 273-318 44-89 (196)
108 PRK14140 heat shock protein Gr 36.3 1.9E+02 0.0041 27.3 8.0 46 274-319 37-82 (191)
109 KOG0964 Structural maintenance 35.6 1.1E+02 0.0024 35.8 7.2 53 272-324 326-378 (1200)
110 PF01025 GrpE: GrpE; InterPro 35.4 36 0.00078 30.4 3.0 62 275-336 12-82 (165)
111 PF05278 PEARLI-4: Arabidopsis 35.2 1.4E+02 0.0031 29.8 7.3 41 275-315 201-241 (269)
112 PF04111 APG6: Autophagy prote 35.1 2.5E+02 0.0053 28.4 9.2 56 274-329 50-105 (314)
113 PF04949 Transcrip_act: Transc 34.5 2.5E+02 0.0054 25.8 8.1 48 279-326 96-143 (159)
114 KOG0964 Structural maintenance 34.5 1.6E+02 0.0034 34.6 8.2 54 276-329 420-473 (1200)
115 PF10805 DUF2730: Protein of u 33.4 2.2E+02 0.0048 24.1 7.3 52 273-324 48-101 (106)
116 PF12325 TMF_TATA_bd: TATA ele 33.2 1.4E+02 0.0031 26.1 6.2 24 275-298 24-47 (120)
117 cd07647 F-BAR_PSTPIP The F-BAR 33.0 2.8E+02 0.006 26.5 8.8 55 274-328 153-207 (239)
118 PRK09039 hypothetical protein; 32.8 2.5E+02 0.0054 28.6 8.9 59 274-332 144-203 (343)
119 PRK14151 heat shock protein Gr 32.7 2.2E+02 0.0048 26.5 7.8 47 272-318 18-64 (176)
120 PRK14155 heat shock protein Gr 32.3 1.9E+02 0.0041 27.7 7.4 44 275-318 14-57 (208)
121 PRK10884 SH3 domain-containing 31.8 2.7E+02 0.0058 26.5 8.4 25 274-298 93-117 (206)
122 PRK14153 heat shock protein Gr 31.5 1.7E+02 0.0036 27.8 6.8 45 274-318 33-77 (194)
123 PF06103 DUF948: Bacterial pro 30.9 2.8E+02 0.0061 22.2 7.6 56 274-329 26-81 (90)
124 COG4026 Uncharacterized protei 30.8 2.9E+02 0.0062 27.3 8.3 49 274-326 142-190 (290)
125 PF02388 FemAB: FemAB family; 30.8 3.2E+02 0.0069 28.3 9.4 78 242-327 216-301 (406)
126 PF03961 DUF342: Protein of un 30.7 2.5E+02 0.0055 29.4 8.8 63 273-335 333-408 (451)
127 PF08654 DASH_Dad2: DASH compl 30.5 1.7E+02 0.0038 24.9 6.1 57 279-335 2-64 (103)
128 PRK14141 heat shock protein Gr 30.3 2.1E+02 0.0046 27.4 7.4 43 277-319 34-76 (209)
129 PRK14160 heat shock protein Gr 30.0 2.1E+02 0.0045 27.6 7.3 45 274-318 61-105 (211)
130 PRK14146 heat shock protein Gr 29.0 2.8E+02 0.006 26.7 7.9 46 273-318 53-98 (215)
131 COG3352 FlaC Putative archaeal 28.8 2.6E+02 0.0057 25.7 7.3 33 279-311 70-102 (157)
132 PF08614 ATG16: Autophagy prot 27.9 3.3E+02 0.0071 25.2 8.2 50 274-323 130-179 (194)
133 PRK14144 heat shock protein Gr 27.9 3.1E+02 0.0068 26.1 8.0 45 274-318 45-89 (199)
134 PF10146 zf-C4H2: Zinc finger- 27.7 3E+02 0.0065 26.8 8.0 25 274-298 25-49 (230)
135 PF05852 DUF848: Gammaherpesvi 27.6 2.2E+02 0.0049 25.9 6.6 42 273-314 60-101 (146)
136 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.5 3.8E+02 0.0083 23.3 8.1 47 274-320 17-63 (132)
137 cd07681 F-BAR_PACSIN3 The F-BA 27.5 3.2E+02 0.0069 27.0 8.3 50 274-323 168-217 (258)
138 COG3883 Uncharacterized protei 27.4 3.8E+02 0.0083 26.8 8.8 58 274-331 45-105 (265)
139 PRK14157 heat shock protein Gr 27.4 2E+02 0.0043 28.0 6.7 41 278-318 81-121 (227)
140 PHA02562 46 endonuclease subun 27.3 3.2E+02 0.007 28.9 9.0 44 292-335 327-370 (562)
141 TIGR01730 RND_mfp RND family e 27.0 2.6E+02 0.0056 26.8 7.6 47 258-304 46-94 (322)
142 PF13747 DUF4164: Domain of un 26.2 3.7E+02 0.008 22.2 7.2 50 274-323 39-88 (89)
143 PF10211 Ax_dynein_light: Axon 25.3 5.2E+02 0.011 24.1 9.0 41 289-329 128-168 (189)
144 PRK14156 heat shock protein Gr 25.1 2.8E+02 0.006 26.0 7.0 41 278-318 31-71 (177)
145 PF08939 DUF1917: Domain of un 25.0 92 0.002 30.5 4.0 23 261-283 193-216 (243)
146 COG5552 Uncharacterized conser 24.9 1.6E+02 0.0035 24.1 4.7 36 18-53 2-37 (88)
147 PF09866 DUF2093: Uncharacteri 24.9 43 0.00094 24.3 1.3 11 260-270 2-12 (42)
148 PF05377 FlaC_arch: Flagella a 24.7 2.4E+02 0.0053 21.6 5.3 8 315-322 34-41 (55)
149 PF09403 FadA: Adhesion protei 24.5 5E+02 0.011 23.0 8.9 59 276-334 22-80 (126)
150 PF05377 FlaC_arch: Flagella a 23.9 2.4E+02 0.0053 21.6 5.2 30 279-308 19-48 (55)
151 PRK05771 V-type ATP synthase s 23.8 5.8E+02 0.013 28.1 10.4 53 274-333 215-267 (646)
152 smart00721 BAR BAR domain. 23.7 1.8E+02 0.004 26.8 5.7 37 289-328 171-207 (239)
153 PRK03947 prefoldin subunit alp 23.7 4.5E+02 0.0097 22.8 7.8 54 261-314 81-134 (140)
154 PRK14161 heat shock protein Gr 23.6 3.9E+02 0.0084 24.9 7.7 43 276-318 21-63 (178)
155 PF05278 PEARLI-4: Arabidopsis 23.5 5.1E+02 0.011 26.0 8.8 62 274-335 193-254 (269)
156 cd07672 F-BAR_PSTPIP2 The F-BA 23.2 4.4E+02 0.0096 25.5 8.3 49 274-322 154-202 (240)
157 PRK11637 AmiB activator; Provi 23.0 4.7E+02 0.01 27.1 9.1 12 276-287 49-60 (428)
158 cd07671 F-BAR_PSTPIP1 The F-BA 22.8 5.4E+02 0.012 24.9 8.9 50 274-323 153-202 (242)
159 PF11594 Med28: Mediator compl 22.8 4.7E+02 0.01 22.6 7.4 57 273-329 14-79 (106)
160 PF12325 TMF_TATA_bd: TATA ele 22.7 5.2E+02 0.011 22.6 8.4 38 284-321 64-101 (120)
161 PRK14159 heat shock protein Gr 22.3 2.4E+02 0.0052 26.3 6.1 46 274-319 22-68 (176)
162 COG4026 Uncharacterized protei 22.3 3.6E+02 0.0077 26.6 7.3 34 276-309 172-205 (290)
163 PRK10884 SH3 domain-containing 22.2 3.2E+02 0.007 26.0 7.0 27 273-299 99-125 (206)
164 PF13863 DUF4200: Domain of un 22.2 4.8E+02 0.01 21.9 8.3 22 276-297 9-30 (126)
165 PF12001 DUF3496: Domain of un 22.0 4.5E+02 0.0097 22.9 7.2 53 275-327 8-72 (111)
166 KOG0774 Transcription factor P 21.7 2E+02 0.0043 28.9 5.5 38 284-324 103-140 (334)
167 PF07888 CALCOCO1: Calcium bin 21.3 4.5E+02 0.0097 29.0 8.6 28 279-306 162-189 (546)
168 COG1579 Zn-ribbon protein, pos 21.3 4.3E+02 0.0094 25.9 7.8 52 274-328 117-168 (239)
169 PF14523 Syntaxin_2: Syntaxin- 21.2 3.2E+02 0.0069 22.0 6.0 34 284-317 67-100 (102)
170 PF09403 FadA: Adhesion protei 21.1 4.9E+02 0.011 23.0 7.4 33 291-323 85-117 (126)
171 TIGR02616 tnaC_leader tryptoph 21.0 52 0.0011 21.5 0.9 12 373-384 7-18 (26)
172 PF04888 SseC: Secretion syste 20.9 6.3E+02 0.014 24.8 9.1 64 272-335 242-305 (306)
173 cd07680 F-BAR_PACSIN1 The F-BA 20.9 5.1E+02 0.011 25.5 8.3 51 274-324 168-218 (258)
174 KOG0976 Rho/Rac1-interacting s 20.9 3.2E+02 0.0069 31.7 7.4 57 274-333 113-169 (1265)
175 PF07820 TraC: TraC-like prote 20.8 2.8E+02 0.0061 23.4 5.5 21 275-295 3-23 (92)
176 TIGR02209 ftsL_broad cell divi 20.7 1.5E+02 0.0033 23.3 3.9 39 271-309 21-59 (85)
177 PF10368 YkyA: Putative cell-w 20.7 3.1E+02 0.0068 26.0 6.6 45 289-333 90-135 (204)
178 PF12777 MT: Microtubule-bindi 20.6 5.2E+02 0.011 26.1 8.6 38 273-310 227-264 (344)
179 PRK14163 heat shock protein Gr 20.2 5.2E+02 0.011 24.9 8.0 43 276-318 42-84 (214)
180 PF09728 Taxilin: Myosin-like 20.2 3.1E+02 0.0066 27.7 6.7 54 274-327 114-167 (309)
181 PF04111 APG6: Autophagy prote 20.1 6.6E+02 0.014 25.3 9.2 21 276-296 66-86 (314)
No 1
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-49 Score=389.45 Aligned_cols=295 Identities=34% Similarity=0.447 Sum_probs=253.5
Q ss_pred ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccch
Q 016449 14 GKQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESES 93 (389)
Q Consensus 14 ~~~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~ 93 (389)
....++|||+||||+++||..|||+|||||||+|||||||+||.|.+.|++|+.||+|||||++|+.||.+|++++...+
T Consensus 11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~ 90 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDEN 90 (336)
T ss_pred hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999887544
Q ss_pred hhhhccccccccHHHHHHHhhccCCCCceeeechhhHHHHHCCceeeecccccccccccccccccceeeeEEeheeccCC
Q 016449 94 QELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAG 173 (389)
Q Consensus 94 ~~~~~d~~s~g~~~~iF~~~Fg~~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~a~fy~v~it~eq~~~G 173 (389)
.....+.++ +++|+.||+.+|+. +....+++ +++.|..+...++++|+|+|.+.++.+....|
T Consensus 91 ~~~~~g~~~----~~~f~~~f~dfg~~----~~g~~~~e---------~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~ 153 (336)
T KOG0713|consen 91 KDGEGGGGG----NDIFSAFFGDFGVT----VGGNPLEE---------ALPKGSDVSSDLEKQLEHFYMGNFVEEVREKG 153 (336)
T ss_pred cccccCCcc----cchHHHhhcccccc----cCCCcccC---------CCCCCceEEeehhhchhhhhcccHHHHHhccC
Confidence 222222111 68999999999873 33333333 25677777788999999999999999999999
Q ss_pred cEEEEecCCCCceeeeeeeccCCCccceeeeecccccCccccccccccCCcccccccccchhhhcCCcchHhhhhccCCc
Q 016449 174 FVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGFQ 253 (389)
Q Consensus 174 ~v~~vqs~~~sKfkl~~Fe~~~~gg~~~~~qeds~~~~k~t~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~f~ 253 (389)
++..+.++...+|++++|++..++|+-..+|+..-.++++ ..+....++.+.+|+.++.++
T Consensus 154 v~~~~~g~~~~~~~~~~~~~~~~~g~~~~~q~~~~~~~~~-------------------~k~~~e~~~~~~~~~~~~~~~ 214 (336)
T KOG0713|consen 154 VYKPAPGTRKCNCRLEMFTQQEGPGRFQMLQEAVCDECPN-------------------VKLVLEEDPLEVEFERGDADG 214 (336)
T ss_pred ceeecCcccccCChhhheeeccCCChhhhhhhhhhccCCc-------------------cceeecCCceeeeeeecccCC
Confidence 9999999999999999999999988777788644443332 222335677888999999999
Q ss_pred ccceeeccCCceEEEEe---------------------cchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 016449 254 PCEITELKAGTHVFAVY---------------------EEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYA 312 (389)
Q Consensus 254 ~~~~~~l~~g~h~~~vy---------------------~~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~ 312 (389)
++..+.++.+.|+|||| .+.+.+.++|++|+.++.||..|+.||++|++++.++..++.
T Consensus 215 ~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~ 294 (336)
T KOG0713|consen 215 PEEIFELEGEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGART 294 (336)
T ss_pred ceeeeeccCCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhh
Confidence 99999999999999999 345889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCcc
Q 016449 313 QEMQAIDELLKQRNEIHASYTTAPPMKRSTSK 344 (389)
Q Consensus 313 ~~~~~~~~ll~~r~~~~~~~~~~~~~~~~~~~ 344 (389)
.+.+++..+|+.|+.++..|++.++....++.
T Consensus 295 ~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~ 326 (336)
T KOG0713|consen 295 RKKGEGMPLLKNRNEKGNLYVTFDVEFPKSSL 326 (336)
T ss_pred hhhhccchhhhccchhcceeEEecccCccccc
Confidence 99999999999999999999999887754333
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-31 Score=266.52 Aligned_cols=137 Identities=34% Similarity=0.577 Sum_probs=113.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhh
Q 016449 17 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQEL 96 (389)
Q Consensus 17 ~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~ 96 (389)
..+|||+||||+++||++|||+|||+||++||||+|+++++|+++|++|++||+|||||++|++||++|..++..++.+.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg 81 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG 81 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998876333221
Q ss_pred hccccccc-cHHHHHHHhhcc------------CCCCceeeechhhHHHHHCCceeeeccccccccccccccc
Q 016449 97 ELDLSSLG-AVNTMFAALFSK------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQ 156 (389)
Q Consensus 97 ~~d~~s~g-~~~~iF~~~Fg~------------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~ 156 (389)
. .+++++ ++++||++||++ .|.++.+.+.++ |++++.|..+...++ ....|..|.++
T Consensus 82 ~-g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~is-leEa~~G~~~~i~~~-~~~~C~~C~Gs 151 (371)
T COG0484 82 F-GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEIT-LEEAVFGVKKEIRVT-RSVTCSTCHGS 151 (371)
T ss_pred C-CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeE-hhhhccCceeeEecc-eeeECCcCCCC
Confidence 1 344455 589999999942 466888888887 999999997554442 23568888776
No 3
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-27 Score=236.12 Aligned_cols=152 Identities=34% Similarity=0.510 Sum_probs=123.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhhh
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~~ 97 (389)
...||+||||+++||++|||+|||+||++|||||||+ |.++|++|++||+|||||++|.+||.+|++++..++.+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~- 78 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGG- 78 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCC-
Confidence 4689999999999999999999999999999999985 889999999999999999999999999999886554332
Q ss_pred ccccccccHHHHHHHhhc--c-------CCCCceeeechhhHHHHHCCceeeecccccccccccccccc-----------
Q 016449 98 LDLSSLGAVNTMFAALFS--K-------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC----------- 157 (389)
Q Consensus 98 ~d~~s~g~~~~iF~~~Fg--~-------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~----------- 157 (389)
+++. |++||+ + .|.++...+.++ |+++|.|......+ ..+.+|.+|.+.+
T Consensus 79 ----g~~~----f~~~F~~g~~~~~~~~rg~~~~~~~~~~-Le~~y~G~s~kl~l-~~~~iCs~C~GsGgksg~~~~C~~ 148 (337)
T KOG0712|consen 79 ----GFGG----FSQFFGFGGNGGRGRQRGKDVVHQLKVT-LEELYMGKSKKLFL-SRNFICSKCSGSGGKSGSAPKCTT 148 (337)
T ss_pred ----CCcc----HHHhccCCCcCccccccCCCceEEEEEE-HHHhhcCCccceec-ccCccCCcCCCCCCCCCCCCCCCC
Confidence 2222 445543 1 367888888887 99999996644333 3356788887653
Q ss_pred cceeeeEEeheeccCCcEEEEecCCC
Q 016449 158 AHFYSVTITEEEARAGFVCRVQSSDK 183 (389)
Q Consensus 158 a~fy~v~it~eq~~~G~v~~vqs~~~ 183 (389)
+...++.+...++.|||++++|+.|.
T Consensus 149 C~GsGv~~~~~~~gPg~~qs~q~~C~ 174 (337)
T KOG0712|consen 149 CRGSGVQTRTRQMGPGMVQSPQLVCD 174 (337)
T ss_pred CCCCCceeEEEeccccccccceeEec
Confidence 45667889999999999999988883
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=3.2e-26 Score=231.28 Aligned_cols=136 Identities=34% Similarity=0.548 Sum_probs=104.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccc-h--h
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESE-S--Q 94 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~-~--~ 94 (389)
.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||++|+.||.+|.+++... + .
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~ 81 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSS 81 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCc
Confidence 479999999999999999999999999999999998 57899999999999999999999999999998765421 0 0
Q ss_pred hh-hc-c-cc-----ccccHHHHHHHhhcc---------CCCCceeeechhhHHHHHCCceeeeccccccccccccccc
Q 016449 95 EL-EL-D-LS-----SLGAVNTMFAALFSK---------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQ 156 (389)
Q Consensus 95 ~~-~~-d-~~-----s~g~~~~iF~~~Fg~---------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~ 156 (389)
.+ .. + +. +++++.++|..||++ .|.++...+.++ |+++++|......+. -...|..|.+.
T Consensus 82 ~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~lt-lee~~~G~~~~i~~~-~~~~C~~C~G~ 158 (372)
T PRK14296 82 NFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLT-FKELLFGVDKIIELD-LLTNCSKCFGS 158 (372)
T ss_pred CCCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeecc-HHHhhCCeeEEEEEe-eeeccCCCCCC
Confidence 00 00 0 00 123456889999973 245788888887 999999987654442 23457666654
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=3.6e-26 Score=230.62 Aligned_cols=136 Identities=29% Similarity=0.493 Sum_probs=104.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhhh
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~~ 97 (389)
..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||++|+.||.+|..++...+.. .
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~-~ 80 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGAS-Q 80 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCC-c
Confidence 479999999999999999999999999999999999888899999999999999999999999999998766432110 0
Q ss_pred ccccc-cccHHHHHHHhhcc-----------CCCCceeeechhhHHHHHCCceeeeccccccccccccccc
Q 016449 98 LDLSS-LGAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQ 156 (389)
Q Consensus 98 ~d~~s-~g~~~~iF~~~Fg~-----------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~ 156 (389)
.+++. ++++.++|..||++ .|.++...+.++ |+++++|......+.. ..+|..|.+.
T Consensus 81 ~~~~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vs-lee~~~G~~~~i~~~r-~~~C~~C~G~ 149 (369)
T PRK14288 81 SDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELS-FKEAVFGCKKTIKVQY-QSVCESCDGT 149 (369)
T ss_pred cccccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEecccc-HHHHhCCeEEEEEEEe-eccCCCCCCc
Confidence 11222 23456678877752 245677777777 9999999876544422 2456666654
No 6
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=2.3e-25 Score=225.48 Aligned_cols=157 Identities=31% Similarity=0.474 Sum_probs=117.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccch-h--
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESES-Q-- 94 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~-~-- 94 (389)
.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||.+|.+++..+. .
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~ 81 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGA 81 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCC
Confidence 479999999999999999999999999999999998 578899999999999999999999999999987764320 0
Q ss_pred -h-hhccc-cccccHHHHHHHhhcc-----------CCCCceeeechhhHHHHHCCceeeeccccccccccccccccc--
Q 016449 95 -E-LELDL-SSLGAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCA-- 158 (389)
Q Consensus 95 -~-~~~d~-~s~g~~~~iF~~~Fg~-----------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~a-- 158 (389)
. ..++. .+++++.++|+.||++ .|.++...+.++ |+++++|......+ .....|..|.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vt-Lee~~~G~~~~i~~-~~~~~C~~C~G~G~~~ 159 (380)
T PRK14276 82 GGFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLD-FEEAIFGKEKEVSY-NREATCHTCNGSGAKP 159 (380)
T ss_pred CCCCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEE-HHHhcCCeEEEEEe-eccccCCCCcCcccCC
Confidence 0 01111 1234577899999973 245677777877 99999998755444 22355777766532
Q ss_pred ----------ceeeeEEeheeccCCcEEE
Q 016449 159 ----------HFYSVTITEEEARAGFVCR 177 (389)
Q Consensus 159 ----------~fy~v~it~eq~~~G~v~~ 177 (389)
++.+......++.+|++++
T Consensus 160 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~ 188 (380)
T PRK14276 160 GTSPVTCGKCHGSGVITVDTQTPLGMMRR 188 (380)
T ss_pred CCCCccCCCCCCeeEEEEEEecCCceEEE
Confidence 3344455556677788754
No 7
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=2.9e-25 Score=224.24 Aligned_cols=155 Identities=33% Similarity=0.465 Sum_probs=116.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhhh
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~~ 97 (389)
..|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||++|+.||.+|.+++.......
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~- 80 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGG- 80 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCC-
Confidence 469999999999999999999999999999999998 578899999999999999999999999999987654211000
Q ss_pred ccccccccHHHHHHHhhcc-----------CCCCceeeechhhHHHHHCCceeeecccccccccccccccc---------
Q 016449 98 LDLSSLGAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC--------- 157 (389)
Q Consensus 98 ~d~~s~g~~~~iF~~~Fg~-----------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~--------- 157 (389)
...++++++++|..||++ .|.++...+.++ |++++.|......+. -...|..|.+.+
T Consensus 81 -~~~~f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vs-lee~~~G~~~~i~~~-r~~~C~~C~G~G~~~~~~~~~ 157 (371)
T PRK14287 81 -GAGDFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLE-FKEAVFGKETEIEIP-REETCGTCHGSGAKPGTKPET 157 (371)
T ss_pred -CCccccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEE-HHHhcCCeEEEEEEe-eeccCCCCCCcccCCCCCCcc
Confidence 011233467899999973 245777778887 999999987544442 224566666432
Q ss_pred ---cceeeeEEeheeccCCcEEE
Q 016449 158 ---AHFYSVTITEEEARAGFVCR 177 (389)
Q Consensus 158 ---a~fy~v~it~eq~~~G~v~~ 177 (389)
|++.++.....++.+|++++
T Consensus 158 C~~C~G~G~~~~~~~~~~G~~~~ 180 (371)
T PRK14287 158 CSHCGGSGQLNVEQNTPFGRVVN 180 (371)
T ss_pred cCCCCCEEEEEEEEecCCceEEE
Confidence 23445555666777787754
No 8
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.92 E-value=2.7e-25 Score=227.81 Aligned_cols=152 Identities=32% Similarity=0.524 Sum_probs=112.7
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchh
Q 016449 15 KQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ 94 (389)
Q Consensus 15 ~~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~ 94 (389)
....+|||+||||+++||.+|||+|||+||++||||+|+ + .++|++|++||+||+||++|+.||.+|..++.+.+
T Consensus 24 ~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~- 98 (421)
T PTZ00037 24 EVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-D---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE- 98 (421)
T ss_pred cccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-h---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC-
Confidence 334689999999999999999999999999999999986 2 48999999999999999999999999987654221
Q ss_pred hhhccccccccHHHHHHHhhcc--------CCCCceeeechhhHHHHHCCceeeecccccccccccccccc---------
Q 016449 95 ELELDLSSLGAVNTMFAALFSK--------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC--------- 157 (389)
Q Consensus 95 ~~~~d~~s~g~~~~iF~~~Fg~--------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~--------- 157 (389)
+.+++.++|..||++ .|.++...+.++ |+++++|......+.. ..+|..|.+.+
T Consensus 99 -------~~~d~~d~f~~~Fggg~~~~~~~rg~di~~~l~vt-Lee~~~G~~~~i~~~r-~~~C~~C~G~G~~~~~~~~C 169 (421)
T PTZ00037 99 -------QPADASDLFDLIFGGGRKPGGKKRGEDIVSHLKVT-LEQIYNGAMRKLAINK-DVICANCEGHGGPKDAFVDC 169 (421)
T ss_pred -------CCcchhhhHHHhhccccccccccCCCCEEEEeeee-HHHHhCCCceEEEeec-cccccccCCCCCCCCCCccC
Confidence 113456889998873 256778788887 9999999876554422 35577666543
Q ss_pred --cceeeeEEeheeccCCcEEEEecC
Q 016449 158 --AHFYSVTITEEEARAGFVCRVQSS 181 (389)
Q Consensus 158 --a~fy~v~it~eq~~~G~v~~vqs~ 181 (389)
+++.++.+...++.+ |+++++++
T Consensus 170 ~~C~G~G~~~~~~~~g~-~~~q~~~~ 194 (421)
T PTZ00037 170 KLCNGQGIRVQIRQMGS-MIHQTQST 194 (421)
T ss_pred CCCCCCCeEEEEEeecc-eeeEEEEe
Confidence 233444455555544 54444433
No 9
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=4.9e-25 Score=223.06 Aligned_cols=137 Identities=35% Similarity=0.611 Sum_probs=106.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchh---
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ--- 94 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~--- 94 (389)
..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|..||.+|.+++...+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 36999999999999999999999999999999999988889999999999999999999999999999877642110
Q ss_pred -hh-hccccccccHHHHHHHhhcc-------------CCCCceeeechhhHHHHHCCceeeeccccccccccccccc
Q 016449 95 -EL-ELDLSSLGAVNTMFAALFSK-------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQ 156 (389)
Q Consensus 95 -~~-~~d~~s~g~~~~iF~~~Fg~-------------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~ 156 (389)
++ .++++.++++.++|..||++ .|.++...+.++ |+++++|......+. ....|..|.+.
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vs-Lee~~~G~~~~i~~~-r~~~C~~C~G~ 157 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLT-FEEAVFGVEKEISVT-RNENCETCNGT 157 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEE-HHHhcCCeEEEEEee-eeccCCCcccc
Confidence 10 01111123567899999973 234777778887 999999987654442 23456666654
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=3.5e-25 Score=223.19 Aligned_cols=138 Identities=34% Similarity=0.545 Sum_probs=106.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchh--h
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ--E 95 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~--~ 95 (389)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|..||.+|..++..++. +
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 36999999999999999999999999999999999988889999999999999999999999999999876643211 1
Q ss_pred hhccccc----cccHHHHHHHhhcc-----------CCCCceeeechhhHHHHHCCceeeecccccccccccccccc
Q 016449 96 LELDLSS----LGAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC 157 (389)
Q Consensus 96 ~~~d~~s----~g~~~~iF~~~Fg~-----------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~ 157 (389)
+...+.+ ++++.++|..||++ .|.++...+.++ |+++++|......+.. ..+|..|.+.+
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vt-lee~~~G~~~~i~~~r-~~~C~~C~G~G 156 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEIS-LEDAYLGYKNNINITR-NMLCESCLGKK 156 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEE-HHHhhCCeEEEEEeee-cccCCCCCCcc
Confidence 1001111 24577899999973 234677777777 9999999876554422 35577666553
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=3e-25 Score=224.17 Aligned_cols=138 Identities=35% Similarity=0.562 Sum_probs=106.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhhh
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~~ 97 (389)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||.+|.+++.....+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 36999999999999999999999999999999999988889999999999999999999999999999876642210000
Q ss_pred ----cccc-ccccHHHHHHHhhcc---------------CCCCceeeechhhHHHHHCCceeeecccccccccccccccc
Q 016449 98 ----LDLS-SLGAVNTMFAALFSK---------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC 157 (389)
Q Consensus 98 ----~d~~-s~g~~~~iF~~~Fg~---------------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~ 157 (389)
.++. .+++++++|+.||++ .|.++...+.++ |+++++|......+. -..+|..|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vt-Lee~~~G~~k~i~~~-r~~~C~~C~G~G 160 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVS-LEDAALGREYKIEIP-RLESCVDCNGSG 160 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEE-HHHHhCCeeEEEEee-ccccCCCCcCCC
Confidence 0111 124577899999973 134677777877 999999987655442 234576666543
No 12
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=5.3e-25 Score=222.79 Aligned_cols=161 Identities=30% Similarity=0.433 Sum_probs=116.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchh-hh
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ-EL 96 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~-~~ 96 (389)
.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||.+|.+++..... ..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAED 82 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccc
Confidence 369999999999999999999999999999999998 5778899999999999999999999999999876643210 00
Q ss_pred hccccccccHHHHHHHhhcc----------CCCCceeeechhhHHHHHCCceeeecccccccccccccccc---------
Q 016449 97 ELDLSSLGAVNTMFAALFSK----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC--------- 157 (389)
Q Consensus 97 ~~d~~s~g~~~~iF~~~Fg~----------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~--------- 157 (389)
.+...+++++.++|+.||++ .|.++...+.++ |++++.|......+.. ...|..|.+.+
T Consensus 83 ~~~~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vs-lee~~~G~~~~i~~~r-~~~C~~C~G~G~~~~~~~~~ 160 (377)
T PRK14298 83 IFRGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYIT-LEEAAFGVRKDIDVPR-AERCSTCSGTGAKPGTSPKR 160 (377)
T ss_pred ccccCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEE-HHHhhCCeEEEEEEEe-eccCCCCCCCcccCCCCCCc
Confidence 00111234567899999973 245777788887 9999999876554422 34566666543
Q ss_pred ---cceeeeEEeheeccCCcEEEEecCC
Q 016449 158 ---AHFYSVTITEEEARAGFVCRVQSSD 182 (389)
Q Consensus 158 ---a~fy~v~it~eq~~~G~v~~vqs~~ 182 (389)
|++.++.+...+. ++.+++++++|
T Consensus 161 C~~C~G~G~~~~~~~~-~~g~~~~~~~C 187 (377)
T PRK14298 161 CPTCGGTGQVTTTRST-PLGQFVTTTTC 187 (377)
T ss_pred CCCCCCccEEEEEEec-CceeEEEEEeC
Confidence 2333444444443 44444555555
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=9.7e-25 Score=221.40 Aligned_cols=158 Identities=34% Similarity=0.527 Sum_probs=116.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchh---
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ--- 94 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~--- 94 (389)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||.+|.+++...+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG 83 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence 36999999999999999999999999999999999988889999999999999999999999999999876542110
Q ss_pred -----hhh---ccccccccHHHHHHHhhcc--------------CCCCceeeechhhHHHHHCCceeeeccccccccccc
Q 016449 95 -----ELE---LDLSSLGAVNTMFAALFSK--------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRK 152 (389)
Q Consensus 95 -----~~~---~d~~s~g~~~~iF~~~Fg~--------------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k 152 (389)
++. .++ .++++.++|..||++ .|.++...+.++ |+++++|......+.. ..+|..
T Consensus 84 ~~~~~g~~~~~~~~-~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vt-Lee~~~G~~~~v~~~r-~~~C~~ 160 (386)
T PRK14277 84 GFGQGGFGGGGFDF-DFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELT-FEEAAFGTEKEIEVER-FEKCDV 160 (386)
T ss_pred CcCCCCccccCccc-cccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEE-HHHHhCCeEEEEEEEe-eccCCC
Confidence 000 011 113345666666652 234677778877 9999999876554422 355766
Q ss_pred ccccc------------cceeeeEEeheeccCCcEEEE
Q 016449 153 VEKQC------------AHFYSVTITEEEARAGFVCRV 178 (389)
Q Consensus 153 ~e~~~------------a~fy~v~it~eq~~~G~v~~v 178 (389)
|.+.+ +++-++.+...++.+|++++.
T Consensus 161 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~ 198 (386)
T PRK14277 161 CKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI 198 (386)
T ss_pred CCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEE
Confidence 66543 234455566677788887654
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=8.7e-25 Score=220.52 Aligned_cols=158 Identities=28% Similarity=0.460 Sum_probs=114.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chhhhhHhhHhhhhhccCCccccccccccCccccccc----
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAND-PVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESE---- 92 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~-~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~---- 92 (389)
..|||+||||+++||.+|||+|||+||++||||+|+++ ++|.++|++|++||+||+||.+|+.||.+|..++...
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 46999999999999999999999999999999999865 6789999999999999999999999999997664311
Q ss_pred -h-hhhhcc-cccccc-H-HHHHHHhhcc------------CCCCceeeechhhHHHHHCCceeeecccccccccccccc
Q 016449 93 -S-QELELD-LSSLGA-V-NTMFAALFSK------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEK 155 (389)
Q Consensus 93 -~-~~~~~d-~~s~g~-~-~~iF~~~Fg~------------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~ 155 (389)
+ .++..+ +..+.. + .++|+.||++ .|.++...+.++ |+++++|......+. -..+|..|.+
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~s-lee~~~G~~~~i~~~-r~~~C~~C~G 160 (369)
T PRK14282 83 ESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVT-LSDLINGAEIPVEYD-RYETCPHCGG 160 (369)
T ss_pred CCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEE-HHHhcCCeEEEEEee-ecccCCCCCc
Confidence 0 010001 111111 1 3788888873 234677778887 999999987654442 2345666665
Q ss_pred cc------------cceeeeEEeheeccCCcEEE
Q 016449 156 QC------------AHFYSVTITEEEARAGFVCR 177 (389)
Q Consensus 156 ~~------------a~fy~v~it~eq~~~G~v~~ 177 (389)
.+ |++-+..+...++.+|++++
T Consensus 161 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~ 194 (369)
T PRK14282 161 TGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVS 194 (369)
T ss_pred cCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEE
Confidence 43 23344556667778888654
No 15
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=1.5e-24 Score=219.61 Aligned_cols=135 Identities=34% Similarity=0.518 Sum_probs=103.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhhhc
Q 016449 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELEL 98 (389)
Q Consensus 19 ~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~~~ 98 (389)
+|||+||||+++||.+|||+|||+||++||||+|+ +++|.++|++|++||+||+||.+|+.||.+|.+.....+....+
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~ 81 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF 81 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence 69999999999999999999999999999999998 67899999999999999999999999999997532211100000
Q ss_pred cccccccHHHHHHHhhcc------------CCCCceeeechhhHHHHHCCceeeecccccccccccccccc
Q 016449 99 DLSSLGAVNTMFAALFSK------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC 157 (389)
Q Consensus 99 d~~s~g~~~~iF~~~Fg~------------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~ 157 (389)
. .++++++++|..||++ .|.++...+.++ |++++.|......+ .....|..|.+.+
T Consensus 82 ~-~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vt-Lee~~~G~~~~i~~-~~~~~C~~C~G~G 149 (378)
T PRK14278 82 G-GGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLD-LEECATGVTKQVTV-DTAVLCDRCHGKG 149 (378)
T ss_pred C-cCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEE-HHHhcCCeEEEEEE-EeeccCCCCcCcc
Confidence 1 1234567899999973 234667777777 99999998765544 2235576666543
No 16
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=1.6e-24 Score=219.19 Aligned_cols=156 Identities=31% Similarity=0.438 Sum_probs=114.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchh--h
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ--E 95 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~--~ 95 (389)
.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||.+|.+++..+.. .
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~ 81 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGG 81 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCC
Confidence 369999999999999999999999999999999998 5778999999999999999999999999999876643210 0
Q ss_pred hh-ccccccccHHHHHHHhhcc-----------CCCCceeeechhhHHHHHCCceeeecccccccccccccccc------
Q 016449 96 LE-LDLSSLGAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC------ 157 (389)
Q Consensus 96 ~~-~d~~s~g~~~~iF~~~Fg~-----------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~------ 157 (389)
+. .++.+..++.++|+.||++ .|.++...+.++ |+++++|......+.. ...|..|.+.+
T Consensus 82 ~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vt-Lee~~~G~~~~i~~~r-~~~C~~C~G~G~~~~~~ 159 (376)
T PRK14280 82 FGGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLT-FEEAVFGKEKEIEIPK-EETCDTCHGSGAKPGTS 159 (376)
T ss_pred CCCCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEE-HHHHhCCceeEEEEee-eccCCCCCCcccCCCCC
Confidence 00 0111001457899999963 245777788887 9999999876554422 34576666543
Q ss_pred ------cceeeeEEeheeccCCcEE
Q 016449 158 ------AHFYSVTITEEEARAGFVC 176 (389)
Q Consensus 158 ------a~fy~v~it~eq~~~G~v~ 176 (389)
+++.+......++.+|+++
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~ 184 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVV 184 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEE
Confidence 2333444445566667764
No 17
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.91 E-value=2.2e-24 Score=216.13 Aligned_cols=155 Identities=32% Similarity=0.527 Sum_probs=117.9
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchh----h
Q 016449 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ----E 95 (389)
Q Consensus 20 d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~----~ 95 (389)
|||+||||+++|+.+|||+|||+||++||||+|+ ++.+.++|++|++||+||+||.+|..||.+|..++..... +
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~ 79 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGG 79 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCC
Confidence 7999999999999999999999999999999998 6778999999999999999999999999999876643211 1
Q ss_pred hh-ccccccccHHHHHHHhhcc-------------CCCCceeeechhhHHHHHCCceeeecccccccccccccccc----
Q 016449 96 LE-LDLSSLGAVNTMFAALFSK-------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC---- 157 (389)
Q Consensus 96 ~~-~d~~s~g~~~~iF~~~Fg~-------------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~---- 157 (389)
+. .+.+++++++++|..||++ .+.++...+.++ |+++++|......+.. ..+|..|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vs-Lee~~~G~~~~i~~~r-~~~C~~C~G~G~~~~ 157 (354)
T TIGR02349 80 FNGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELT-FEEAVFGVEKEIEIPR-KESCETCHGTGAKPG 157 (354)
T ss_pred cCCccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEE-HHHHhCCeeEEEEeec-CCcCCCCCCCCCCCC
Confidence 10 1111345677899999973 234677777777 9999999876555422 35577666543
Q ss_pred --------cceeeeEEeheeccCCcEEE
Q 016449 158 --------AHFYSVTITEEEARAGFVCR 177 (389)
Q Consensus 158 --------a~fy~v~it~eq~~~G~v~~ 177 (389)
+++-++.+....+.+|++++
T Consensus 158 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~ 185 (354)
T TIGR02349 158 TDPKTCPTCGGTGQVRRQQGTPFGFFQQ 185 (354)
T ss_pred CCCccCCCCCCeeEEEEEEeccCCceEE
Confidence 23445556667888888765
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=2.2e-24 Score=217.39 Aligned_cols=137 Identities=31% Similarity=0.545 Sum_probs=105.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhhh
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~~ 97 (389)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|..||.+|.+++...+....
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~ 82 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF 82 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCc
Confidence 47999999999999999999999999999999999988889999999999999999999999999999877643211000
Q ss_pred cccc-ccccHHHHHHHhhc-c------------CCCCceeeechhhHHHHHCCceeeeccccccccccccccc
Q 016449 98 LDLS-SLGAVNTMFAALFS-K------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQ 156 (389)
Q Consensus 98 ~d~~-s~g~~~~iF~~~Fg-~------------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~ 156 (389)
.++. .++++.++|..||+ + .|.++...+.++ |++++.|......+.. ...|..|.+.
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~ls-lee~~~G~~~~i~~~r-~~~C~~C~G~ 153 (366)
T PRK14294 83 SGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLP-FLEAAFGTEKEIRIQK-LETCEECHGS 153 (366)
T ss_pred CccccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEee-HHHhcCCeEEEEEeee-cccCCCCCCc
Confidence 0111 12346688999887 2 134677777777 9999999876554422 3446666553
No 19
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=4.8e-24 Score=215.55 Aligned_cols=137 Identities=32% Similarity=0.552 Sum_probs=105.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhhh
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~~ 97 (389)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|..||.+|.+++.+.+....
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g 82 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG 82 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence 47999999999999999999999999999999999988889999999999999999999999999999876643211000
Q ss_pred c-cc-cccccHHHHHHHhhc--c----------CCCCceeeechhhHHHHHCCceeeeccccccccccccccc
Q 016449 98 L-DL-SSLGAVNTMFAALFS--K----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQ 156 (389)
Q Consensus 98 ~-d~-~s~g~~~~iF~~~Fg--~----------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~ 156 (389)
+ +. ..++.+.++|+.||+ + .|.++...+.++ |+++++|......+.. ...|..|.+.
T Consensus 83 ~~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vt-Lee~~~G~~k~i~~~r-~~~C~~C~G~ 153 (373)
T PRK14301 83 FSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVS-FRQAAKGDEVTLRIPK-NVTCDDCGGS 153 (373)
T ss_pred cccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEecc-HHHHhCCceEEEEeee-cccCCCCCCc
Confidence 1 11 112356688888886 1 245777788887 9999999876554422 2456666654
No 20
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=5.7e-24 Score=216.30 Aligned_cols=138 Identities=32% Similarity=0.512 Sum_probs=103.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCcccc----ccc-
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAV----ESE- 92 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l----~~~- 92 (389)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||++|+.||.+|..+. ...
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~ 87 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR 87 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence 479999999999999999999999999999999999888899999999999999999999999999985321 110
Q ss_pred ----h--hhh-------hccccc---------cccHHHHHHHhhcc-----------CCCCceeeechhhHHHHHCCcee
Q 016449 93 ----S--QEL-------ELDLSS---------LGAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVT 139 (389)
Q Consensus 93 ----~--~~~-------~~d~~s---------~g~~~~iF~~~Fg~-----------~g~~i~t~vs~~~LEea~~G~~~ 139 (389)
+ .++ ..|+.. .+.+.++|..||++ .|.++...+.++ |+++++|...
T Consensus 88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~lt-Lee~~~G~~~ 166 (392)
T PRK14279 88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLD-FVEAAKGVTM 166 (392)
T ss_pred ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEE-HHHHhCCeEE
Confidence 0 000 011110 12355778888862 245777888887 9999999876
Q ss_pred eecccccccccccccccc
Q 016449 140 VRPLLLDQHITRKVEKQC 157 (389)
Q Consensus 140 ~~~l~~g~~~c~k~e~~~ 157 (389)
...+. ...+|..|.+.+
T Consensus 167 ~v~~~-~~~~C~~C~G~G 183 (392)
T PRK14279 167 PLRLT-SPAPCTTCHGSG 183 (392)
T ss_pred EEeee-ccccCCCCcccc
Confidence 55442 234566666543
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=6.8e-24 Score=214.02 Aligned_cols=136 Identities=38% Similarity=0.627 Sum_probs=105.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchh--h
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ--E 95 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~--~ 95 (389)
.+|||+||||+++||.+|||+|||+||++||||+|++++.|.++|++|++||+||+||.+|..||.+|..++...+. +
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 47999999999999999999999999999999999977889999999999999999999999999999876642211 1
Q ss_pred hhcccccccc-HHHHHHHhhcc----------CCCCceeeechhhHHHHHCCceeeeccccccccccccccc
Q 016449 96 LELDLSSLGA-VNTMFAALFSK----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQ 156 (389)
Q Consensus 96 ~~~d~~s~g~-~~~iF~~~Fg~----------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~ 156 (389)
+. .++++.+ +.++|..||++ .|.++...+.++ |+++++|......+.. ...|..|.+.
T Consensus 83 ~~-~~~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vs-Lee~~~G~~~~v~~~r-~~~C~~C~G~ 151 (371)
T PRK10767 83 FG-GGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEIT-LEEAVRGVTKEIRIPT-LVTCDTCHGS 151 (371)
T ss_pred CC-CccccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEee-hHHhhCCeeEEEeeee-cccCCCCCCc
Confidence 10 0111222 56788888863 356778888887 9999999876555432 3456666654
No 22
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=1.3e-23 Score=213.97 Aligned_cols=158 Identities=36% Similarity=0.511 Sum_probs=110.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchh-hh
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ-EL 96 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~-~~ 96 (389)
.+|||+||||+++|+.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||.+|.+++..... ..
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 36999999999999999999999999999999999977889999999999999999999999999999876642100 00
Q ss_pred hcccc-ccccHHHH---HHHhhcc-----------------------------CCCCceeeechhhHHHHHCCceeeecc
Q 016449 97 ELDLS-SLGAVNTM---FAALFSK-----------------------------LGVPIKTTVSATVLEEALNGMVTVRPL 143 (389)
Q Consensus 97 ~~d~~-s~g~~~~i---F~~~Fg~-----------------------------~g~~i~t~vs~~~LEea~~G~~~~~~l 143 (389)
...+. ...+++++ |+.||++ .|.++...+.++ |+++++|......+
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vt-Lee~~~G~~~~i~~ 160 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLT-LEEIAKGVEKTLKI 160 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeE-HHHHhCCeEEEEEE
Confidence 00000 01123344 3466752 134667777776 99999998765544
Q ss_pred ccccccccccccccc-----------ceeeeEEeheeccCCcEEE
Q 016449 144 LLDQHITRKVEKQCA-----------HFYSVTITEEEARAGFVCR 177 (389)
Q Consensus 144 ~~g~~~c~k~e~~~a-----------~fy~v~it~eq~~~G~v~~ 177 (389)
.. ...|..|.+.+. ++-+......++.+|++++
T Consensus 161 ~r-~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~ 204 (397)
T PRK14281 161 KK-QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN 204 (397)
T ss_pred Ee-eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE
Confidence 22 345666665432 2233444445566677643
No 23
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.3e-23 Score=209.91 Aligned_cols=137 Identities=30% Similarity=0.535 Sum_probs=104.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc-hhhhhHhhHhhhhhccCCccccccccccCccccccchhhhh
Q 016449 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDP-VAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (389)
Q Consensus 19 ~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~-~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~~ 97 (389)
.|||+||||+++||.+|||+|||+||++||||+|++++ +|.++|++|++||+||+||.+|+.||.+|..++...+.++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 69999999999999999999999999999999998765 68899999999999999999999999999876542111111
Q ss_pred -ccccccccHHHHHHHhhccC------------------CCCceeeechhhHHHHHCCceeeecccccccccccccccc
Q 016449 98 -LDLSSLGAVNTMFAALFSKL------------------GVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC 157 (389)
Q Consensus 98 -~d~~s~g~~~~iF~~~Fg~~------------------g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~ 157 (389)
.++.+++++.++|..||++. +.++...+.++ |++++.|......+.. ...|..|.+.+
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~ls-Lee~~~G~~~~i~~~r-~~~C~~C~G~g 159 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDIS-LEDAYYGTEKRIKYRR-NAMCPDCSGTG 159 (365)
T ss_pred ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEec-HHHhcCCEEEEEEeee-cccCCCCcccc
Confidence 01112356678899888741 34666777776 9999999876554422 34566666543
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=1.2e-23 Score=213.67 Aligned_cols=136 Identities=34% Similarity=0.524 Sum_probs=101.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccc-h--hh
Q 016449 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESE-S--QE 95 (389)
Q Consensus 19 ~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~-~--~~ 95 (389)
.|||+||||+++||++|||+|||+||++||||+|++++.|.++|++|++||+||+||++|+.||.+|.+++..+ + ..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 38999999999999999999999999999999999888899999999999999999999999999998765221 0 00
Q ss_pred hhc-c-----------ccc-cccHHHHHHHhhcc---------------CCCCceeeechhhHHHHHCCceeeecccccc
Q 016449 96 LEL-D-----------LSS-LGAVNTMFAALFSK---------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQ 147 (389)
Q Consensus 96 ~~~-d-----------~~s-~g~~~~iF~~~Fg~---------------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~ 147 (389)
..+ + +.+ ++.++++|..||++ .+.++...+.++ |+++++|..+...+.. .
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vs-lee~~~G~~~~i~~~r-~ 158 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLS-FEEAAKGVEKELLVSG-Y 158 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEE-HHHHhCCeeEEEEEee-e
Confidence 000 0 000 11224678888764 134677777877 9999999986555422 3
Q ss_pred ccccccccc
Q 016449 148 HITRKVEKQ 156 (389)
Q Consensus 148 ~~c~k~e~~ 156 (389)
..|..|.+.
T Consensus 159 ~~C~~C~G~ 167 (391)
T PRK14284 159 KSCDACSGS 167 (391)
T ss_pred ccCCCCccc
Confidence 456666544
No 25
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.2e-23 Score=211.86 Aligned_cols=137 Identities=34% Similarity=0.600 Sum_probs=103.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccc----cCccccccc-
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDT----AGFEAVESE- 92 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~----~G~~~l~~~- 92 (389)
..|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||. +|.+++...
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~ 87 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGP 87 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCC
Confidence 579999999999999999999999999999999999878899999999999999999999999998 887665421
Q ss_pred --h--hhhhccccc-------------c-ccHHHHHHHhhcc--------CCCCceeeechhhHHHHHCCceeeeccccc
Q 016449 93 --S--QELELDLSS-------------L-GAVNTMFAALFSK--------LGVPIKTTVSATVLEEALNGMVTVRPLLLD 146 (389)
Q Consensus 93 --~--~~~~~d~~s-------------~-g~~~~iF~~~Fg~--------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g 146 (389)
+ .++.++... + +.+.++|..||++ .|.++...+.++ |+++++|..+...+. -
T Consensus 88 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~ls-Lee~~~G~~k~i~~~-r 165 (389)
T PRK14295 88 GGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLS-FTEAIDGATVPLRLT-S 165 (389)
T ss_pred CCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEE-HHHHhCCceEEEEee-c
Confidence 0 011111000 0 1245677777762 356788888887 999999987655442 2
Q ss_pred cccccccccc
Q 016449 147 QHITRKVEKQ 156 (389)
Q Consensus 147 ~~~c~k~e~~ 156 (389)
..+|..|.+.
T Consensus 166 ~~~C~~C~G~ 175 (389)
T PRK14295 166 QAPCPACSGT 175 (389)
T ss_pred cccCCCCccc
Confidence 3457666654
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=1.9e-23 Score=211.40 Aligned_cols=156 Identities=34% Similarity=0.500 Sum_probs=111.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchh-hh
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ-EL 96 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~-~~ 96 (389)
.+|||+||||+++||.+|||+|||+||++||||+|+ +++|.++|++|++||+||+||.+|++||.+|.+++...+. +.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~ 82 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDI 82 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccccc
Confidence 579999999999999999999999999999999998 4789999999999999999999999999999876542110 00
Q ss_pred ----h-cc-ccccc-cHHHHHHHh-hcc-------CCCCceeeechhhHHHHHCCceeeecccccccccccccccc----
Q 016449 97 ----E-LD-LSSLG-AVNTMFAAL-FSK-------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC---- 157 (389)
Q Consensus 97 ----~-~d-~~s~g-~~~~iF~~~-Fg~-------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~---- 157 (389)
. .+ +.+++ ++.++|..| |++ .+.+|..++.++ |+++++|......+.. ...|..|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~~~~~~kg~di~~~l~vs-Led~~~G~~~~i~~~r-~~~C~~C~G~G~~~~ 160 (378)
T PRK14283 83 FNNINFEDIFQGFGFGIGNIFDMFGFGGGSRHGPQRGADIYTEVEIT-LEEAASGVEKDIKVRH-TKKCPVCNGSRAEPG 160 (378)
T ss_pred ccccCccccccccccchhhhccccccCCCCCCCccCCCCeEEEeeee-HHHHhCCcceEEEeee-eccCCCCCccccCCC
Confidence 0 01 11111 344566666 552 356777888887 9999999886554422 24466665432
Q ss_pred --------cceeeeEEeheeccCCcEE
Q 016449 158 --------AHFYSVTITEEEARAGFVC 176 (389)
Q Consensus 158 --------a~fy~v~it~eq~~~G~v~ 176 (389)
+++-++.....+..+|+++
T Consensus 161 ~~~~~C~~C~G~G~~~~~~~~~~g~~~ 187 (378)
T PRK14283 161 SEVKTCPTCGGTGQVKQVRNTILGQMM 187 (378)
T ss_pred CCCccCCCcCCccEEEEEEeccCceEE
Confidence 2333445555566667653
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=5.4e-23 Score=208.42 Aligned_cols=136 Identities=39% Similarity=0.608 Sum_probs=100.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhh-
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQEL- 96 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~- 96 (389)
.+|||+||||+++||.+|||+|||+||++||||+|++ +.|.++|++|++||+||+||.+|+.||.+|..++.......
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 80 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ 80 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence 4799999999999999999999999999999999984 78899999999999999999999999999987654221100
Q ss_pred -hcccc--ccccHHHHHHHhh---------cc---------------CCCCceeeechhhHHHHHCCceeeecccccccc
Q 016449 97 -ELDLS--SLGAVNTMFAALF---------SK---------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHI 149 (389)
Q Consensus 97 -~~d~~--s~g~~~~iF~~~F---------g~---------------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~ 149 (389)
...++ ...+++++|..|| ++ .|.++...+.++ |++++.|......+. -..+
T Consensus 81 ~~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vs-Lee~~~G~~~~i~~~-r~~~ 158 (382)
T PRK14291 81 GQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEIS-LEEAYTGTTVSLEVP-RYVP 158 (382)
T ss_pred cccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEE-HHHhhCCEEEEEEEe-eecc
Confidence 00111 1234556666553 21 234677777777 999999987654442 2345
Q ss_pred ccccccc
Q 016449 150 TRKVEKQ 156 (389)
Q Consensus 150 c~k~e~~ 156 (389)
|..|.+.
T Consensus 159 C~~C~G~ 165 (382)
T PRK14291 159 CEACGGT 165 (382)
T ss_pred CCCCccc
Confidence 6666654
No 28
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.1e-23 Score=211.40 Aligned_cols=231 Identities=28% Similarity=0.403 Sum_probs=146.9
Q ss_pred ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chhhhhHhhHhhhhhccCCccccccccccCccccccc
Q 016449 14 GKQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAND-PVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESE 92 (389)
Q Consensus 14 ~~~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~-~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~ 92 (389)
.+...++||+||||.++|++.+||++||+|||+|||||||+. .+|+++|+.|+.||+|||||+.|.|||.+..+.+.+.
T Consensus 3 ~~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 3 NPFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred CchhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 355678999999999999999999999999999999999866 4689999999999999999999999999998777654
Q ss_pred hhhhhccccccccHHHHHHHhhccCCCCceeeechhhHHHHHCCceeeecccccccccccccccccceeeeEEeheeccC
Q 016449 93 SQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARA 172 (389)
Q Consensus 93 ~~~~~~d~~s~g~~~~iF~~~Fg~~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~a~fy~v~it~eq~~~ 172 (389)
....+. ...++|.- +.. .++...+.+.++||.|-.
T Consensus 83 ~s~~~~------~~~dlf~f---------------------f~~-----------~~y~gy~~~~~gfy~vy~------- 117 (508)
T KOG0717|consen 83 NSDTGV------QIEDLFQF---------------------FTS-----------SCYIGYENTSAGFYRVYQ------- 117 (508)
T ss_pred CCcccc------chHHHHHH---------------------hhh-----------hhhcccccccchhHHHHH-------
Confidence 322111 11222221 111 112233445556665420
Q ss_pred CcEEEEecCCCCceeeeeeeccCCCccceeeeecccccCccccccccccCCcccccccccchhhhcCCcchHhhhhccCC
Q 016449 173 GFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGF 252 (389)
Q Consensus 173 G~v~~vqs~~~sKfkl~~Fe~~~~gg~~~~~qeds~~~~k~t~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~f 252 (389)
+=|-.+.-|....+| |+ -+.+|.||++++ ++....+||..|.+|
T Consensus 118 -----------dvf~~~~~~e~~~~~-------d~------------~~~ap~fg~~~t------~ye~~~~fY~~W~af 161 (508)
T KOG0717|consen 118 -----------DVFNALASDELPFLG-------DS------------KLLYPLFGYSTT------DYEQVVPFYQFWLAF 161 (508)
T ss_pred -----------HHHHHHhhhhhhhcc-------CC------------ccccccccCCCC------cHHHHHHHHHHHHhh
Confidence 001111111111111 11 345889999998 777777999999999
Q ss_pred cccceeeccCCceEEEEe-----cchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------------------HHHH
Q 016449 253 QPCEITELKAGTHVFAVY-----EEKENLRAVEAEILSKRAELSKFESEYREVLAQFT------------------EMTS 309 (389)
Q Consensus 253 ~~~~~~~l~~g~h~~~vy-----~~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~------------------~~~~ 309 (389)
.|.++-.- .|-| ......+.|+.+....|.-- ..||.+....+. .-..
T Consensus 162 sT~Ksf~W------~d~Ydv~~~~~r~~~R~v~~enkk~rq~a---k~eyNe~Vr~lv~fvkKrDpRvk~~l~~k~~E~~ 232 (508)
T KOG0717|consen 162 STKKSFEW------LDEYDVEEESDRFTRRLMERENKKQRQYA---RQEYNETVRNLVGFVKKRDPRVKAMLELKDAEAY 232 (508)
T ss_pred hhhhhHHh------hhhhhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 99887333 2345 12233555555555544332 234444332221 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 016449 310 RYAQEMQAIDELLKQRNEIHASYTTA 335 (389)
Q Consensus 310 ~~~~~~~~~~~ll~~r~~~~~~~~~~ 335 (389)
||.+|.....+|+..|+. -+.+.+-
T Consensus 233 r~kqe~~Rk~~~~~r~e~-~e~r~n~ 257 (508)
T KOG0717|consen 233 RSKQEESRKQQLRKRREY-AETRKNN 257 (508)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhc
Confidence 777888888888888876 4444433
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.5e-22 Score=203.02 Aligned_cols=155 Identities=30% Similarity=0.476 Sum_probs=113.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhhh
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~~ 97 (389)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|+.|++||+||+||.+|+.||.+|.+++.... ..
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~-~~- 78 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAA-GF- 78 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCC-Cc-
Confidence 369999999999999999999999999999999998 567899999999999999999999999999987654211 10
Q ss_pred ccccccccHHHHHHHhhccC-----------------CCCceeeechhhHHHHHCCceeeecccccccccccccccc---
Q 016449 98 LDLSSLGAVNTMFAALFSKL-----------------GVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC--- 157 (389)
Q Consensus 98 ~d~~s~g~~~~iF~~~Fg~~-----------------g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~--- 157 (389)
.+..+++++.++|..||+++ +.++...+.++ |+++++|......+.. ...|..|.+.+
T Consensus 79 ~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vs-Lee~~~G~~k~i~~~r-~~~C~~C~G~G~~~ 156 (374)
T PRK14293 79 PDMGDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLD-FREAIFGGEKEIRIPH-LETCETCRGSGAKP 156 (374)
T ss_pred CCcccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEee-HHHHhCCceEEEEeec-cccCCCCCCcCCCC
Confidence 01112344668888888531 23566667776 8999999876554422 35566665532
Q ss_pred ---------cceeeeEEeheeccCCcEEE
Q 016449 158 ---------AHFYSVTITEEEARAGFVCR 177 (389)
Q Consensus 158 ---------a~fy~v~it~eq~~~G~v~~ 177 (389)
+++-++.....++.+|++++
T Consensus 157 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~ 185 (374)
T PRK14293 157 GTGPTTCSTCGGAGQVRRATRTPFGSFTQ 185 (374)
T ss_pred CCCCeeCCCCCCcceEEEEEecCcceEEE
Confidence 23344555555667777654
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.1e-22 Score=204.32 Aligned_cols=157 Identities=31% Similarity=0.442 Sum_probs=109.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccch--hh
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESES--QE 95 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~--~~ 95 (389)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||.+|..++.... .+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGG 83 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCC
Confidence 4799999999999999999999999999999999998888999999999999999999999999999987654210 00
Q ss_pred h---hccccc-cccHHHHHHHhhcc-----------------CCCCceeeechhhHHHHHCCceeeeccccccccccccc
Q 016449 96 L---ELDLSS-LGAVNTMFAALFSK-----------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVE 154 (389)
Q Consensus 96 ~---~~d~~s-~g~~~~iF~~~Fg~-----------------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e 154 (389)
+ ..++.. +..|.++|..+|++ .|.++...+.++ |+++++|......+.. ...|..|.
T Consensus 84 ~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vs-Lee~~~G~~~~i~~~r-~~~C~~C~ 161 (386)
T PRK14289 84 FSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLN-LKEISTGVEKKFKVKK-YVPCSHCH 161 (386)
T ss_pred CCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEE-HHHhhCCeEEEEEEEe-ecccCCCC
Confidence 0 001100 01112223332211 134666777776 9999999886555422 35576666
Q ss_pred ccc------------cceeeeEEeheeccCCcEE
Q 016449 155 KQC------------AHFYSVTITEEEARAGFVC 176 (389)
Q Consensus 155 ~~~------------a~fy~v~it~eq~~~G~v~ 176 (389)
+.+ |++-+......+..+|+++
T Consensus 162 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~ 195 (386)
T PRK14289 162 GTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQ 195 (386)
T ss_pred CCCCCCCCCCCcCCCCcCeEEEEEEEecccceEE
Confidence 543 2334455555666677764
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.2e-21 Score=192.12 Aligned_cols=122 Identities=41% Similarity=0.645 Sum_probs=95.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccc--h--
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESE--S-- 93 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~--~-- 93 (389)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.+.++|++|++||+||+||.+|+.||.+|..+.... +
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~ 81 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPP 81 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCC
Confidence 479999999999999999999999999999999998 67889999999999999999999999999998643211 0
Q ss_pred --hhhhcccc--ccccHHHHHHHhhccC-------------------CCCceeeechhhHHHHHCCceeee
Q 016449 94 --QELELDLS--SLGAVNTMFAALFSKL-------------------GVPIKTTVSATVLEEALNGMVTVR 141 (389)
Q Consensus 94 --~~~~~d~~--s~g~~~~iF~~~Fg~~-------------------g~~i~t~vs~~~LEea~~G~~~~~ 141 (389)
.....++. .+++++++|..||++. |.++...+.++ |++++.|+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~is-L~ea~~G~~~~i 151 (291)
T PRK14299 82 PGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLT-LEEAYRGGEKVV 151 (291)
T ss_pred CCCCCCCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEec-HHHHhCCCeEEE
Confidence 00001111 1346778999998741 23566677777 899999986544
No 32
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=9.1e-22 Score=198.60 Aligned_cols=133 Identities=35% Similarity=0.469 Sum_probs=99.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhhhc
Q 016449 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELEL 98 (389)
Q Consensus 19 ~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~~~ 98 (389)
.|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||.+|.++......+ .
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~--~ 78 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGG--D 78 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCC--c
Confidence 59999999999999999999999999999999998 57789999999999999999999999999997653211000 0
Q ss_pred ccccc-ccHHHHHHHhhccC-------------CCCceeeechhhHHHHHCCceeeeccccccccccccccc
Q 016449 99 DLSSL-GAVNTMFAALFSKL-------------GVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQ 156 (389)
Q Consensus 99 d~~s~-g~~~~iF~~~Fg~~-------------g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~ 156 (389)
.+.++ .++.++|..||++. |.++...+.++ |+++++|......+.. ...|..|.+.
T Consensus 79 ~~~~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~s-Lee~~~G~~~~v~~~r-~~~C~~C~G~ 148 (371)
T PRK14292 79 PFGGMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARIT-LEQARAGEEVEVEVDR-LTECEHCHGS 148 (371)
T ss_pred ccCccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEecc-HHHHcCCeEEEEEEEe-eecCCCCccc
Confidence 11111 23468899998742 23566777776 9999999875444322 2346666543
No 33
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=7.6e-22 Score=199.43 Aligned_cols=136 Identities=26% Similarity=0.463 Sum_probs=99.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccc---h-h
Q 016449 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESE---S-Q 94 (389)
Q Consensus 19 ~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~---~-~ 94 (389)
.|||+||||+++||.+|||+|||+||++||||+++ ++.++++|++|++||+||+|+.+|..||.+|.+++... + .
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 81 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence 69999999999999999999999999999999998 56788999999999999999999999999998765421 0 0
Q ss_pred hhhcccc-cc-ccHHHHHHHhhcc-----------CCCCceeeechhhHHHHHCCceeeecccccccccccccccc
Q 016449 95 ELELDLS-SL-GAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC 157 (389)
Q Consensus 95 ~~~~d~~-s~-g~~~~iF~~~Fg~-----------~g~~i~t~vs~~~LEea~~G~~~~~~l~~g~~~c~k~e~~~ 157 (389)
+...++. .+ ..+.++|..+|++ .|.++...+.++ |+++++|......+.. ...|..|.+.+
T Consensus 82 g~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~s-Lee~~~G~~k~i~~~r-~~~C~~C~G~g 155 (372)
T PRK14300 82 GNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTIN-LEEAFHGIEKNISFSS-EVKCDTCHGSG 155 (372)
T ss_pred CCCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEE-HHHHhCCceEEEEeee-ccccCCCCCcc
Confidence 0000111 11 1234455555542 234667777776 9999999876554422 34566666543
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.80 E-value=4.8e-20 Score=181.78 Aligned_cols=120 Identities=31% Similarity=0.479 Sum_probs=93.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCcc----ccccchh
Q 016449 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFE----AVESESQ 94 (389)
Q Consensus 19 ~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~----~l~~~~~ 94 (389)
+|||+||||+++||.+|||+|||+||++||||+|+ ++.+.++|++|++||+||+||.+|..||.+|.. ++.....
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~ 82 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence 69999999999999999999999999999999987 567899999999999999999999999998743 1111000
Q ss_pred hhhccccccccHHHHHHHhhcc-----------CCCCceeeechhhHHHHHCCceee
Q 016449 95 ELELDLSSLGAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVTV 140 (389)
Q Consensus 95 ~~~~d~~s~g~~~~iF~~~Fg~-----------~g~~i~t~vs~~~LEea~~G~~~~ 140 (389)
....+..+..++.++|+.||++ .|.++...+.++ |++++.|+.+.
T Consensus 83 ~~~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~is-Lee~~~G~~k~ 138 (306)
T PRK10266 83 HGDGQSFNAEDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVF-LEETLTEHKRT 138 (306)
T ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEE-HHHhcCCceEE
Confidence 0000001234577899999884 245777778887 99999998643
No 35
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1e-18 Score=167.93 Aligned_cols=76 Identities=53% Similarity=0.869 Sum_probs=71.1
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccc
Q 016449 15 KQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVE 90 (389)
Q Consensus 15 ~~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~ 90 (389)
.-.+.|+|+|||++++|+.++||+|||+|+++||||+++++|+++++|++||.||+||+||.+|..||.+|..++.
T Consensus 27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 3356789999999999999999999999999999999999999999999999999999999999999999876654
No 36
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.7e-18 Score=167.57 Aligned_cols=108 Identities=43% Similarity=0.621 Sum_probs=84.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhhh
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~~ 97 (389)
..|||+||||+++|+..|||+||++||++||||.|.+ .+|.++|++|.+||+||+|+++|..||..|..+..
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~------- 113 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHG------- 113 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccc-------
Confidence 3399999999999999999999999999999999985 59999999999999999999999999998875410
Q ss_pred ccccccccHHHHHHHhhcc-C-----CCCceeeechhhHHHHHCCc
Q 016449 98 LDLSSLGAVNTMFAALFSK-L-----GVPIKTTVSATVLEEALNGM 137 (389)
Q Consensus 98 ~d~~s~g~~~~iF~~~Fg~-~-----g~~i~t~vs~~~LEea~~G~ 137 (389)
...|+..++|..+|++ . +.++....+.+ ++++--|.
T Consensus 114 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-f~~A~~g~ 155 (288)
T KOG0715|consen 114 ---EFGGNPFDVFLEFFGGKMNKRVPDKDQYYDLSLD-FKEAVRGS 155 (288)
T ss_pred ---cccCCccchHHHhhcccccccccCcccccccccC-HHHHhhcc
Confidence 0112345666777766 2 23444444555 56665565
No 37
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.72 E-value=5.5e-18 Score=184.68 Aligned_cols=78 Identities=29% Similarity=0.501 Sum_probs=71.0
Q ss_pred cccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCcccccc
Q 016449 13 AGKQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVES 91 (389)
Q Consensus 13 ~~~~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~ 91 (389)
.......+||+||||+++||..+||+|||+||++||||+|+++ .|..+|+.|++||+|||||.+|+.||.+|..++..
T Consensus 567 t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 567 TIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 3444568999999999999999999999999999999999965 68889999999999999999999999999877653
No 38
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3e-18 Score=168.35 Aligned_cols=72 Identities=49% Similarity=0.802 Sum_probs=69.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCcccc
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAV 89 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l 89 (389)
..|||.||||+.+|++.||++|||+.|++|||||||+||.|.++|+.+.+||+||+|+..|..||..|..+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 579999999999999999999999999999999999999999999999999999999999999999887554
No 39
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.68 E-value=1.2e-17 Score=127.48 Aligned_cols=63 Identities=49% Similarity=0.985 Sum_probs=60.0
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc-hhhhhHhhHhhhhhccCCcccccccc
Q 016449 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDP-VAADIFKEVTFSYNILSDPDKRRQYD 82 (389)
Q Consensus 20 d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~-~a~~~F~~I~~AYevLsDp~kR~~YD 82 (389)
|||+||||+++++.++||++|+++++.+|||+++++. .+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999998665 58899999999999999999999998
No 40
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.2e-17 Score=154.83 Aligned_cols=110 Identities=37% Similarity=0.578 Sum_probs=84.2
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC--CCchhhhhHhhHhhhhhccCCccccccccccCccccccc
Q 016449 15 KQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNA--NDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESE 92 (389)
Q Consensus 15 ~~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~--~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~ 92 (389)
....+|+|+||||.++|++.+|++|||+||++||||+++ +..+|+.+|+.|+.||+||+|.++|+.||..|.-. ..
T Consensus 10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id--d~ 87 (264)
T KOG0719|consen 10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID--DE 87 (264)
T ss_pred cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC--Cc
Confidence 345669999999999999999999999999999999995 34578999999999999999999999999998633 11
Q ss_pred hhhhhccccccccHHHHHHHhhccCCCCceeeechhhHHHHHCCc
Q 016449 93 SQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGM 137 (389)
Q Consensus 93 ~~~~~~d~~s~g~~~~iF~~~Fg~~g~~i~t~vs~~~LEea~~G~ 137 (389)
..+ -..++-.+|.++|..+ +..+++.++.-|.|+
T Consensus 88 ~~d------~~~~~~e~~~~iyk~V-----teedIeef~a~Y~gS 121 (264)
T KOG0719|consen 88 SGD------IDEDWLEFWRAIYKKV-----TEEDIEEFEANYQGS 121 (264)
T ss_pred cch------hhhHHHHHHHHHHhhc-----ccccHHHHHHHhccc
Confidence 111 1234556777777632 333444466656665
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.5e-17 Score=167.74 Aligned_cols=77 Identities=34% Similarity=0.657 Sum_probs=70.0
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc---hhhhhHhhHhhhhhccCCccccccccccCcccccc
Q 016449 15 KQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDP---VAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVES 91 (389)
Q Consensus 15 ~~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~---~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~ 91 (389)
.....|||.+|+|+++||.+|||+|||++++.|||||+.+.. .|++.|+.|.+||||||||++|.+||.+|+++++-
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t 84 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT 84 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence 345679999999999999999999999999999999987432 48899999999999999999999999999999873
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.59 E-value=1.4e-15 Score=114.22 Aligned_cols=59 Identities=56% Similarity=0.921 Sum_probs=54.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC-CchhhhhHhhHhhhhhccCCccc
Q 016449 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAN-DPVAADIFKEVTFSYNILSDPDK 77 (389)
Q Consensus 19 ~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~-~~~a~~~F~~I~~AYevLsDp~k 77 (389)
+|||+||||+++++.++||+||+++++.+|||++++ .+.+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999986 56788999999999999999853
No 43
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.58 E-value=1.3e-15 Score=163.20 Aligned_cols=89 Identities=45% Similarity=0.803 Sum_probs=74.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhhhc
Q 016449 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELEL 98 (389)
Q Consensus 19 ~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~~~ 98 (389)
+|||+||||+++|+..+||+|||+||++||||++++ +.+..+|+.|++||++|+||.+|..||.+|..+.....
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d~e~----- 75 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDRED----- 75 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccccccc-----
Confidence 699999999999999999999999999999999985 77889999999999999999999999999876653221
Q ss_pred cccccccHHHHHHHhhcc
Q 016449 99 DLSSLGAVNTMFAALFSK 116 (389)
Q Consensus 99 d~~s~g~~~~iF~~~Fg~ 116 (389)
++....++|..||+.
T Consensus 76 ---gf~f~~DIF~sfFee 90 (871)
T TIGR03835 76 ---DFDFQADVFNSFFEE 90 (871)
T ss_pred ---ccchhHHHHHHHhhh
Confidence 111223567777754
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.58 E-value=1.4e-15 Score=136.77 Aligned_cols=84 Identities=20% Similarity=0.363 Sum_probs=70.3
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCccccccchhhh
Q 016449 19 RDPYEVLGVSRNC--TDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQEL 96 (389)
Q Consensus 19 ~d~YeiLGV~~~A--s~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~~~ 96 (389)
+.+|+||||+++| |..+||+|||++|+++|||++++ .++|+.|++||++|+|+.+|..||.+|........
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~--- 77 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEE--- 77 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCccccccc---
Confidence 4689999999999 99999999999999999999763 36999999999999999999999999975433221
Q ss_pred hccccccccHHHHHHHhhcc
Q 016449 97 ELDLSSLGAVNTMFAALFSK 116 (389)
Q Consensus 97 ~~d~~s~g~~~~iF~~~Fg~ 116 (389)
.....+|.++||+
T Consensus 78 -------~~~~~~f~~~fg~ 90 (153)
T PHA03102 78 -------DVPSGYVGATFGD 90 (153)
T ss_pred -------ccHHHHhhhhcCC
Confidence 1156677887764
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.7e-15 Score=135.07 Aligned_cols=69 Identities=55% Similarity=0.910 Sum_probs=65.4
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCch-hhhhHhhHhhhhhccCCccccccccccC
Q 016449 17 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPV-AADIFKEVTFSYNILSDPDKRRQYDTAG 85 (389)
Q Consensus 17 ~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~-a~~~F~~I~~AYevLsDp~kR~~YD~~G 85 (389)
...|||+||||+++|+..||++|||++|++||||++++++. +.+.|+.|++||+||+|+.+|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 45799999999999999999999999999999999998885 9999999999999999999999999863
No 46
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.55 E-value=1.5e-15 Score=150.98 Aligned_cols=76 Identities=42% Similarity=0.753 Sum_probs=67.4
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc---hhhhhHhhHhhhhhccCCccccccccccCcccccc
Q 016449 15 KQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDP---VAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVES 91 (389)
Q Consensus 15 ~~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~---~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~ 91 (389)
-+.+||||+||||.++|+..||-+|||++|.+||||-..+.. .|+++|..|..|-+||+||++|+++|. |.+.++.
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~ 468 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP 468 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence 356899999999999999999999999999999999887543 378899999999999999999999998 5555543
No 47
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.55 E-value=4.7e-15 Score=109.34 Aligned_cols=55 Identities=58% Similarity=1.011 Sum_probs=51.9
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCC
Q 016449 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSD 74 (389)
Q Consensus 20 d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsD 74 (389)
|||+||||+++++.++||++|++|++++|||++++.+.+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999998556788999999999999986
No 48
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.1e-14 Score=134.65 Aligned_cols=73 Identities=33% Similarity=0.718 Sum_probs=66.6
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccCcc
Q 016449 15 KQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFE 87 (389)
Q Consensus 15 ~~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~ 87 (389)
....-|+|+||||+++||+.|||+|||+|++++||||+|+..+.++.|..|++||+.|+|+..|..|..+|..
T Consensus 95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 3455799999999999999999999999999999999985556788899999999999999999999999964
No 49
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.2e-13 Score=127.57 Aligned_cols=99 Identities=38% Similarity=0.667 Sum_probs=76.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chhhhhHhhHhhhhhccCCccccccccccCccccccchh-h
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAND-PVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ-E 95 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~-~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~~~~~-~ 95 (389)
..|||.||||.++|+..+|++||+++|++||||+|+.+ ..+..+|++|.+||++|+|+.+|..||.+|.+++.+.+. .
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence 57999999999999999999999999999999998865 235558999999999999999999999999855543111 0
Q ss_pred h--hcc--ccccccHHHHHHHhhcc
Q 016449 96 L--ELD--LSSLGAVNTMFAALFSK 116 (389)
Q Consensus 96 ~--~~d--~~s~g~~~~iF~~~Fg~ 116 (389)
. ... ..........|..|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~ 106 (306)
T KOG0714|consen 82 SSFTSELFYFLFRKPDKDFYEFFGV 106 (306)
T ss_pred CCCCCCcceeccCchhhhHHHHhCC
Confidence 0 011 11223346678888873
No 50
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.6e-13 Score=137.45 Aligned_cols=70 Identities=56% Similarity=0.824 Sum_probs=66.0
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chhhhhHhhHhhhhhccCCcccccccccc
Q 016449 15 KQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAND-PVAADIFKEVTFSYNILSDPDKRRQYDTA 84 (389)
Q Consensus 15 ~~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~-~~a~~~F~~I~~AYevLsDp~kR~~YD~~ 84 (389)
.+.++|||.||||.++|+..|||+|||++|+.||||+|.++ .+++.+|++|.+||.||+||.+|..||+.
T Consensus 369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 45688999999999999999999999999999999999988 67899999999999999999999999983
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.36 E-value=5.1e-13 Score=122.25 Aligned_cols=65 Identities=28% Similarity=0.446 Sum_probs=58.2
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCch-----hhhhHhhHhhhhhccCCccccccccc
Q 016449 19 RDPYEVLGVSRN--CTDQEIKSAYRKMALKYHPDKNANDPV-----AADIFKEVTFSYNILSDPDKRRQYDT 83 (389)
Q Consensus 19 ~d~YeiLGV~~~--As~~EIKkAYrklalk~HPDKn~~~~~-----a~~~F~~I~~AYevLsDp~kR~~YD~ 83 (389)
.|||+||||++. ++..+|+++||++++++|||+.++.+. +.+.|..|++||++|+||.+|..|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 489999999996 678999999999999999999875543 56789999999999999999999985
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.32 E-value=8.5e-13 Score=120.32 Aligned_cols=66 Identities=27% Similarity=0.421 Sum_probs=57.7
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCch---hhhhHhhHhhhhhccCCcccccccccc
Q 016449 19 RDPYEVLGVSRN--CTDQEIKSAYRKMALKYHPDKNANDPV---AADIFKEVTFSYNILSDPDKRRQYDTA 84 (389)
Q Consensus 19 ~d~YeiLGV~~~--As~~EIKkAYrklalk~HPDKn~~~~~---a~~~F~~I~~AYevLsDp~kR~~YD~~ 84 (389)
.|||++|||++. ++..+|+++||++++++|||+++...+ +...+..|++||+||+||.+|..|+..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 589999999996 789999999999999999999874322 335688999999999999999999763
No 53
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.31 E-value=1.5e-12 Score=119.78 Aligned_cols=66 Identities=26% Similarity=0.448 Sum_probs=58.4
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCchhh-----hhHhhHhhhhhccCCccccccccc
Q 016449 18 RRDPYEVLGVSRN--CTDQEIKSAYRKMALKYHPDKNANDPVAA-----DIFKEVTFSYNILSDPDKRRQYDT 83 (389)
Q Consensus 18 ~~d~YeiLGV~~~--As~~EIKkAYrklalk~HPDKn~~~~~a~-----~~F~~I~~AYevLsDp~kR~~YD~ 83 (389)
..|||+||||++. ++..+|+++||+|++++|||+++..+.+. +.+..||.||++|+||.+|..|+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 4799999999995 67899999999999999999998665543 446899999999999999999995
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7.9e-13 Score=126.74 Aligned_cols=67 Identities=42% Similarity=0.743 Sum_probs=62.9
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCcccccccccc
Q 016449 17 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTA 84 (389)
Q Consensus 17 ~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~ 84 (389)
..+|.|+||||.++|+..||.+|||+||++||||+++ ++++.+.|..|..||++|.|.+.|..||-.
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r-~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNR-DPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccC-CchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 5679999999999999999999999999999999999 567779999999999999999999999964
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.28 E-value=3.2e-12 Score=117.30 Aligned_cols=67 Identities=21% Similarity=0.372 Sum_probs=60.1
Q ss_pred CCCCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCch-----hhhhHhhHhhhhhccCCccccccccc
Q 016449 17 LRRDPYEVLGVSRN--CTDQEIKSAYRKMALKYHPDKNANDPV-----AADIFKEVTFSYNILSDPDKRRQYDT 83 (389)
Q Consensus 17 ~~~d~YeiLGV~~~--As~~EIKkAYrklalk~HPDKn~~~~~-----a~~~F~~I~~AYevLsDp~kR~~YD~ 83 (389)
...|||++|||++. .+..+|+++||+|++++|||++++.+. +.+.|..||+||+||+||.+|..|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 35799999999997 568999999999999999999876553 56779999999999999999999996
No 56
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.8e-12 Score=132.49 Aligned_cols=68 Identities=37% Similarity=0.693 Sum_probs=64.9
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccccccC
Q 016449 17 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAG 85 (389)
Q Consensus 17 ~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G 85 (389)
..+|+|.+|||+.++|+++||+.||++|...|||||- .+.|.+.|+.++.||++|+|+++|..||...
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 3789999999999999999999999999999999998 7899999999999999999999999999844
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.10 E-value=5.1e-11 Score=116.10 Aligned_cols=59 Identities=39% Similarity=0.572 Sum_probs=52.3
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--C-----chhhhhHhhHhhhhhccCC
Q 016449 16 QLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAN--D-----PVAADIFKEVTFSYNILSD 74 (389)
Q Consensus 16 ~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~--~-----~~a~~~F~~I~~AYevLsD 74 (389)
....|+|+||||+++||.+|||+|||+|+++||||++.+ . +.++++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 445799999999999999999999999999999999743 1 2478999999999999985
No 58
>PHA02624 large T antigen; Provisional
Probab=99.09 E-value=8.8e-11 Score=125.01 Aligned_cols=60 Identities=22% Similarity=0.392 Sum_probs=56.2
Q ss_pred CCCcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCccccccc
Q 016449 18 RRDPYEVLGVSRNC--TDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQY 81 (389)
Q Consensus 18 ~~d~YeiLGV~~~A--s~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp~kR~~Y 81 (389)
.+++|++|||+++| +..+||+|||++|++||||+++ +.++|++|+.||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 9999999999999999999964 357999999999999999999999
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.07 E-value=8.1e-11 Score=101.53 Aligned_cols=53 Identities=23% Similarity=0.478 Sum_probs=47.7
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccC
Q 016449 17 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILS 73 (389)
Q Consensus 17 ~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLs 73 (389)
...++|+||||+++||.+|||++||+|++++|||++. ....|++|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG----STYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999853 3568899999999985
No 60
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.83 E-value=1.2e-09 Score=111.81 Aligned_cols=72 Identities=32% Similarity=0.677 Sum_probs=64.4
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC---C--chhhhhHhhHhhhhhccCCccccccccccCccc
Q 016449 17 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAN---D--PVAADIFKEVTFSYNILSDPDKRRQYDTAGFEA 88 (389)
Q Consensus 17 ~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~---~--~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~ 88 (389)
..-|+|||||++.+++..+||++||+|+.++||||-++ + .+-++.+++|++||+.|+|...|..|=.+|...
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 34599999999999999999999999999999999875 1 345788999999999999999999999998643
No 61
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.9e-09 Score=99.36 Aligned_cols=69 Identities=33% Similarity=0.615 Sum_probs=61.9
Q ss_pred cccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chhhhhHhhHhhhhhccCCccccccc
Q 016449 13 AGKQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAND-PVAADIFKEVTFSYNILSDPDKRRQY 81 (389)
Q Consensus 13 ~~~~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~-~~a~~~F~~I~~AYevLsDp~kR~~Y 81 (389)
++....-|+|+||.|.+..+.++||+.||+|++..|||||++| +.|...|-.|..||.+|-|+.-|..-
T Consensus 47 gstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 47 GSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred CccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4455788999999999999999999999999999999999988 56889999999999999999766543
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.76 E-value=6.4e-09 Score=95.63 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=57.4
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCch-----hhhhHhhHhhhhhccCCccccccccc
Q 016449 19 RDPYEVLGVSRN--CTDQEIKSAYRKMALKYHPDKNANDPV-----AADIFKEVTFSYNILSDPDKRRQYDT 83 (389)
Q Consensus 19 ~d~YeiLGV~~~--As~~EIKkAYrklalk~HPDKn~~~~~-----a~~~F~~I~~AYevLsDp~kR~~YD~ 83 (389)
.|||++||+++. .+...+++.|++|.+.+|||+....+. +.+.-..||+||.+|+||-+|..|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 599999999996 889999999999999999999876543 44568899999999999999999954
No 63
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.9e-09 Score=100.71 Aligned_cols=95 Identities=27% Similarity=0.445 Sum_probs=72.3
Q ss_pred CCCCCcccccCCCC---CCCHHHHHHHHHHHHHhhCCCCCC--CCchhhhhHhhHhhhhhccCCccccccccccCccccc
Q 016449 16 QLRRDPYEVLGVSR---NCTDQEIKSAYRKMALKYHPDKNA--NDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVE 90 (389)
Q Consensus 16 ~~~~d~YeiLGV~~---~As~~EIKkAYrklalk~HPDKn~--~~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G~~~l~ 90 (389)
....|+|.+||++. .|++.+|.+|.++...+||||+.. ++-.....|+.|+.||+||+|+.+|.+||+.-..+.-
T Consensus 40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~adv 119 (379)
T COG5269 40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADV 119 (379)
T ss_pred hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccCC
Confidence 34579999999997 689999999999999999999973 3455678999999999999999999999996544321
Q ss_pred cchhhhhccccccccHHHHHHHhhc
Q 016449 91 SESQELELDLSSLGAVNTMFAALFS 115 (389)
Q Consensus 91 ~~~~~~~~d~~s~g~~~~iF~~~Fg 115 (389)
... .......|..+|...|.
T Consensus 120 ppp-----~~~t~~~Ffe~w~pvFe 139 (379)
T COG5269 120 PPP-----RIYTPDEFFEVWEPVFE 139 (379)
T ss_pred CCc-----cCCCchhHHHHHHHHHH
Confidence 110 01122345667777764
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.71 E-value=1.1e-08 Score=92.50 Aligned_cols=54 Identities=28% Similarity=0.445 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCc-----hhhhhHhhHhhhhhccCCcccccccccc
Q 016449 31 CTDQEIKSAYRKMALKYHPDKNANDP-----VAADIFKEVTFSYNILSDPDKRRQYDTA 84 (389)
Q Consensus 31 As~~EIKkAYrklalk~HPDKn~~~~-----~a~~~F~~I~~AYevLsDp~kR~~YD~~ 84 (389)
.+..+|+++||++++++|||+.++.+ .+...|..||+||++|+||.+|..|+..
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 46789999999999999999976432 2567899999999999999999999974
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=5.8e-06 Score=91.92 Aligned_cols=52 Identities=37% Similarity=0.590 Sum_probs=45.4
Q ss_pred CCcccccCCCCC----CCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccC
Q 016449 19 RDPYEVLGVSRN----CTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILS 73 (389)
Q Consensus 19 ~d~YeiLGV~~~----As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLs 73 (389)
-+-|+||.|+-+ ...+.||++|++||.+||||||| +..++|..+++||+.|.
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHH
Confidence 477999999852 34478999999999999999985 67899999999999998
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.7e-05 Score=76.06 Aligned_cols=58 Identities=21% Similarity=0.492 Sum_probs=50.5
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhh-ccCC
Q 016449 16 QLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYN-ILSD 74 (389)
Q Consensus 16 ~~~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYe-vLsD 74 (389)
..-+.+|.||||..+|+.++++.||..||+++|||... +.....+|..|.+||. ||+.
T Consensus 44 e~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 44 EKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHH
Confidence 33467999999999999999999999999999999876 3456788999999998 7763
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0007 Score=57.85 Aligned_cols=52 Identities=25% Similarity=0.474 Sum_probs=43.5
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccCCc
Q 016449 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDP 75 (389)
Q Consensus 20 d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLsDp 75 (389)
.--.||||.++++.+.||.|+||..+..|||+.. .| -.-..||+|+++|...
T Consensus 57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GG-SP---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGG-SP---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCC-CH---HHHHHHHHHHHHHhcc
Confidence 3345999999999999999999999999999976 33 4456799999999754
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.0078 Score=54.81 Aligned_cols=67 Identities=24% Similarity=0.428 Sum_probs=53.8
Q ss_pred CCCCcccccCCCC--CCCHHHHHHHHHHHHHhhCCCCCCC----C-chhhhhHhhHhhhhhccCCccccccccc
Q 016449 17 LRRDPYEVLGVSR--NCTDQEIKSAYRKMALKYHPDKNAN----D-PVAADIFKEVTFSYNILSDPDKRRQYDT 83 (389)
Q Consensus 17 ~~~d~YeiLGV~~--~As~~EIKkAYrklalk~HPDKn~~----~-~~a~~~F~~I~~AYevLsDp~kR~~YD~ 83 (389)
...+||.++|... ...++-+..-|.-..++.|||+... + ..|.+...++++||.+|.||-+|..|=.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3468999998654 4566667778999999999999432 1 2477889999999999999999999964
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.77 E-value=0.026 Score=59.39 Aligned_cols=47 Identities=30% Similarity=0.464 Sum_probs=35.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc---h----hhhhHhhHhhhhhc
Q 016449 25 LGVSRNCTDQEIKSAYRKMALKYHPDKNANDP---V----AADIFKEVTFSYNI 71 (389)
Q Consensus 25 LGV~~~As~~EIKkAYrklalk~HPDKn~~~~---~----a~~~F~~I~~AYev 71 (389)
+++..-.+..+||++|||..|..||||.++.+ . +.+.|-.+++||+.
T Consensus 394 VsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 394 VSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred CchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 34444568999999999999999999987653 1 44556667777664
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.014 Score=53.51 Aligned_cols=55 Identities=35% Similarity=0.517 Sum_probs=46.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--Cc-----hhhhhHhhHhhhhhcc
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAN--DP-----VAADIFKEVTFSYNIL 72 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~--~~-----~a~~~F~~I~~AYevL 72 (389)
+.+.|.+||+...++..+|+++|+++...+|||+-.. .+ .+.+++++|+.||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999999998432 22 3678899999999753
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.03 Score=51.43 Aligned_cols=67 Identities=30% Similarity=0.429 Sum_probs=52.9
Q ss_pred CcccccCCCCCCC--HHHHHHHHHHHHHhhCCCCCCCCch-----hhhhHhhHhhhhhccCCccccccccccCc
Q 016449 20 DPYEVLGVSRNCT--DQEIKSAYRKMALKYHPDKNANDPV-----AADIFKEVTFSYNILSDPDKRRQYDTAGF 86 (389)
Q Consensus 20 d~YeiLGV~~~As--~~EIKkAYrklalk~HPDKn~~~~~-----a~~~F~~I~~AYevLsDp~kR~~YD~~G~ 86 (389)
|++..+|.++.+. .+.++..|+.+.+.+|||+....+. +-..+..++.||.+|.||-.|..|=..-.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 4566667776554 3568999999999999999875543 33579999999999999999999976433
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=83.09 E-value=1.5 Score=38.73 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=34.3
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhccC
Q 016449 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILS 73 (389)
Q Consensus 20 d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevLs 73 (389)
.-..||||++..+.++|.+.|.+|-...+|++.. . .-.-..|..|.+.|.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG-S---fYLQSKV~rAKErl~ 108 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGG-S---FYLQSKVFRAKERLE 108 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCC-C---HHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999764 1 233445667776665
No 73
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=76.70 E-value=1.8 Score=43.36 Aligned_cols=56 Identities=34% Similarity=0.523 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCC----CchhhhhHhhHhhhhhccCCccccccccccC
Q 016449 30 NCTDQEIKSAYRKMALKYHPDKNAN----DPVAADIFKEVTFSYNILSDPDKRRQYDTAG 85 (389)
Q Consensus 30 ~As~~EIKkAYrklalk~HPDKn~~----~~~a~~~F~~I~~AYevLsDp~kR~~YD~~G 85 (389)
-++..+|+.+|+..++.+||++-.. .....+.|++|.+||.||.+..+|...|..-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 3577899999999999999998741 1234677999999999999977777887754
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=66.45 E-value=8.7 Score=29.10 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHH
Q 016449 20 DPYEVLGVSRNCTDQEIKSAYRKMAL 45 (389)
Q Consensus 20 d~YeiLGV~~~As~~EIKkAYrklal 45 (389)
+-|++|||+++.+++.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999999876
No 75
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.53 E-value=22 Score=33.96 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.1
Q ss_pred eeeccCCceEEEEe
Q 016449 257 ITELKAGTHVFAVY 270 (389)
Q Consensus 257 ~~~l~~g~h~~~vy 270 (389)
-+.+.||+|.||+|
T Consensus 94 Fta~~~GeH~IC~~ 107 (215)
T KOG1690|consen 94 FTALTPGEHRICIQ 107 (215)
T ss_pred EEccCCCceEEEEe
Confidence 35677999999999
No 76
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.28 E-value=40 Score=24.56 Aligned_cols=37 Identities=16% Similarity=0.392 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 292 KFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEI 328 (389)
Q Consensus 292 ~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~ 328 (389)
++|.+|...++.|+.+.+.|.....+.+.|.++-...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999998888888887766544
No 77
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=55.84 E-value=43 Score=28.01 Aligned_cols=62 Identities=10% Similarity=0.216 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 335 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~~ 335 (389)
++|-.-|+.-..+-+-|.+++.-|..+...|.++|+-+++-+.+-+.|+..-+.++...+..
T Consensus 12 nkL~npEl~~sErTeaLqqlr~~~~sf~sEy~dlT~~~eKl~aek~DL~vsNskLFrQ~~lt 73 (97)
T PF11418_consen 12 NKLGNPELTESERTEALQQLRESYTSFHSEYEDLTEALEKLTAEKEDLIVSNSKLFRQHGLT 73 (97)
T ss_dssp HHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhCCC
Confidence 45555566666777888999999999999999999999888888999999999999776654
No 78
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=55.39 E-value=9.1 Score=29.44 Aligned_cols=22 Identities=45% Similarity=0.668 Sum_probs=20.7
Q ss_pred hccCCcccceeeccCCceEEEE
Q 016449 248 KLDGFQPCEITELKAGTHVFAV 269 (389)
Q Consensus 248 ~l~~f~~~~~~~l~~g~h~~~v 269 (389)
-+.+|++.+-..|+.|++||++
T Consensus 33 I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 33 ILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred EEcCcccCCccccCCCCEEEEE
Confidence 6899999999999999999997
No 79
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=55.34 E-value=17 Score=34.38 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCCchhhhhHhhHhhhhhcc
Q 016449 28 SRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNIL 72 (389)
Q Consensus 28 ~~~As~~EIKkAYrklalk~HPDKn~~~~~a~~~F~~I~~AYevL 72 (389)
+++||.+||..|+.++..+|--| .+.-..|..||+.+
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~I 37 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAI 37 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHH
Confidence 47899999999999999998433 34456688999854
No 80
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=54.06 E-value=18 Score=31.33 Aligned_cols=48 Identities=23% Similarity=0.359 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCchh----hhhHhhHhhhhhccCCcc
Q 016449 29 RNCTDQEIKSAYRKMALKYHPDKNANDPVA----ADIFKEVTFSYNILSDPD 76 (389)
Q Consensus 29 ~~As~~EIKkAYrklalk~HPDKn~~~~~a----~~~F~~I~~AYevLsDp~ 76 (389)
+..+..+++.|.|..-++.|||.-...|++ .+-++.++.-.+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 355678899999999999999987666653 344888887777777553
No 81
>COG1422 Predicted membrane protein [Function unknown]
Probab=51.97 E-value=32 Score=32.83 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 016449 282 EILSKRAELSKFESEYREVLAQ-FTEMTSRYAQEMQAID 319 (389)
Q Consensus 282 ~~~~k~~el~~f~~ey~~~~~~-~~~~~~~~~~~~~~~~ 319 (389)
.|.+-++++..||.|++||.++ =.+..+|++++..++-
T Consensus 73 km~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~ 111 (201)
T COG1422 73 KMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMM 111 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4667788999999999999874 5677788888766654
No 82
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=51.70 E-value=7.4 Score=24.33 Aligned_cols=14 Identities=43% Similarity=0.729 Sum_probs=9.7
Q ss_pred CceeeecccccccC
Q 016449 374 KKWFNIHLKADKRN 387 (389)
Q Consensus 374 ~~~~~~~~~~~~~~ 387 (389)
.|||||.-|.-+..
T Consensus 10 skwfnidnkivdhr 23 (24)
T PF08053_consen 10 SKWFNIDNKIVDHR 23 (24)
T ss_pred eeeEeccCeecccC
Confidence 58999987654433
No 83
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=51.56 E-value=95 Score=27.81 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=52.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016449 272 EKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHAS 331 (389)
Q Consensus 272 ~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~ 331 (389)
-.+..+..|.++..-.+.|..++.|+....+.++.....+.+....+..+-++|++--..
T Consensus 25 ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 25 LLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346678899999999999999999999999999999999999999999988887765443
No 84
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=51.27 E-value=88 Score=30.93 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016449 275 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT 333 (389)
Q Consensus 275 ~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~ 333 (389)
.|+.+-.|+++-+-.|++--.-+||.++..+|++.-..+.+..++||.+++.++--+.+
T Consensus 17 ~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVt 75 (277)
T PF15030_consen 17 RVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVT 75 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccc
Confidence 47889999999999999999999999999999999999999999999999999876554
No 85
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=50.12 E-value=75 Score=30.54 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 324 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~ 324 (389)
+.|..+..+|...=.+|.....+=++|+..|..++.+-..-.-+|++||..
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555666666666667777788888888888888888889999975
No 86
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=49.63 E-value=1.1e+02 Score=29.18 Aligned_cols=59 Identities=12% Similarity=0.269 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASY 332 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~ 332 (389)
.++..++..+.....++...+.+|..+..++..+..+|.+++..+=..+-.=|+-.-.+
T Consensus 150 ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~ 208 (236)
T cd07651 150 KELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQF 208 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999988877666555444333
No 87
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.00 E-value=1.2e+02 Score=27.27 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=33.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 016449 272 EKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRY 311 (389)
Q Consensus 272 ~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~ 311 (389)
..+++..++.+|...++||...+.+...+.+....+.+..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4567999999999999999999999999998888776643
No 88
>PRK09806 tryptophanase leader peptide; Provisional
Probab=48.69 E-value=9 Score=24.36 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=10.7
Q ss_pred CceeeecccccccCC
Q 016449 374 KKWFNIHLKADKRNK 388 (389)
Q Consensus 374 ~~~~~~~~~~~~~~~ 388 (389)
.|||||.-|.-+..|
T Consensus 10 skwfnidnkivdhrp 24 (26)
T PRK09806 10 SKWFNIDNKIVDHRP 24 (26)
T ss_pred eeEEeccCeeeccCC
Confidence 589999877655444
No 89
>PRK14154 heat shock protein GrpE; Provisional
Probab=47.64 E-value=91 Score=29.92 Aligned_cols=57 Identities=12% Similarity=0.275 Sum_probs=43.7
Q ss_pred eeccCCceEEEEecchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 258 TELKAGTHVFAVYEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 258 ~~l~~g~h~~~vy~~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
.+.+|-.|=.+ .-.+..++++|...+.++..++..|.-+++-|+-...|..++.+.+
T Consensus 40 ~~~~~~~~~~~----~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~ 96 (208)
T PRK14154 40 QEMEPHREGLE----FPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADI 96 (208)
T ss_pred cccCccccccc----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544333 2456677788888999999999999999999999999998887664
No 90
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.63 E-value=1.1e+02 Score=30.92 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 273 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRN 326 (389)
Q Consensus 273 ~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~ 326 (389)
.++|.+.+.+|..+|.+|..++.+-.+.....++++++-.+...+|.++=+.++
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366888888899999999999999888888888888877777777777655554
No 91
>PRK14143 heat shock protein GrpE; Provisional
Probab=43.41 E-value=1.2e+02 Score=29.57 Aligned_cols=46 Identities=26% Similarity=0.463 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 319 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
..+..++.+|...+.++..++..|.-+++-|+-.-.|..++.+.+.
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~ 112 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLR 112 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999999999999999999988876543
No 92
>PRK14139 heat shock protein GrpE; Provisional
Probab=43.05 E-value=1.3e+02 Score=28.31 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=41.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 273 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 319 (389)
Q Consensus 273 ~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
...+..++.+|...+.++..++..|.-+++.|+-...|..+|.+.+.
T Consensus 31 ~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~ 77 (185)
T PRK14139 31 EDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAH 77 (185)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577888899999999999999999999999999999999877653
No 93
>PHA00489 scaffolding protein
Probab=41.80 E-value=1e+02 Score=26.06 Aligned_cols=57 Identities=12% Similarity=0.258 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHA 330 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~ 330 (389)
++|-+-|..-..+-+-|.+++.-|......|.++|+-+++.+.+-+.|+..-+.++.
T Consensus 13 nkL~dpEl~~sErTeaLqqlr~~ygSf~sEy~elT~a~eKl~aek~DLivsNskLFr 69 (101)
T PHA00489 13 NKLGDPELTESERTEALQQLRESYGSFHSEYEELTEALEKLTAEKEDLIVSNSKLFR 69 (101)
T ss_pred HHcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 455566666677778889999999999999999999888888888899998888873
No 94
>PRK14158 heat shock protein GrpE; Provisional
Probab=41.63 E-value=1.5e+02 Score=28.17 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=42.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 272 EKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 319 (389)
Q Consensus 272 ~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
..+.+..+|.+|...+.++..++..|.-+++-|+-.-.|..+|.+.+.
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~ 85 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELL 85 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999999999877654
No 95
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=41.61 E-value=1.2e+02 Score=22.93 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=24.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 016449 287 RAELSKFESEYREVLAQFTEMTSRYAQE 314 (389)
Q Consensus 287 ~~el~~f~~ey~~~~~~~~~~~~~~~~~ 314 (389)
.-||++|=.-|-.++.+|++-..|--+|
T Consensus 8 dpELDqFMeaYc~~L~kykeeL~~p~~E 35 (52)
T PF03791_consen 8 DPELDQFMEAYCDMLVKYKEELQRPFQE 35 (52)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999988877664
No 96
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=41.40 E-value=1.3e+02 Score=30.52 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=44.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 273 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRN 326 (389)
Q Consensus 273 ~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~ 326 (389)
.++|.++..+|..+|+++..++.+-.+....-++.+++-.+-..+|.++=+.++
T Consensus 210 k~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 210 KEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377889999999999999999999999999888888877777777766654443
No 97
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=41.35 E-value=1.3e+02 Score=29.07 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTT 334 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~ 334 (389)
++...+.+.+.+.++|+.+-++++..+..+.+++....+....+.|-|+.+=+...++...
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 4456666777777777777777788888888888777777888888888776666665543
No 98
>PRK14148 heat shock protein GrpE; Provisional
Probab=40.65 E-value=1.5e+02 Score=28.16 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 319 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
..+..++.+|...++++..++..|.-+++.|+-...|..++...+.
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~ 85 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNAR 85 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478888999999999999999999999999999999999876543
No 99
>PRK14162 heat shock protein GrpE; Provisional
Probab=40.44 E-value=1.5e+02 Score=28.12 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
..+..++.+|...+.++..++..|.-+++-|+-.-.|+.++.+.+
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~ 83 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQL 83 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999999999999999987654
No 100
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=39.90 E-value=1.7e+02 Score=28.51 Aligned_cols=53 Identities=15% Similarity=0.397 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRN 326 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~ 326 (389)
.+|..++.++.....++.+-+.+|..++..+.....+|.++|..+=+.+-.=|
T Consensus 168 ~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lE 220 (258)
T cd07655 168 DQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFE 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999999999999999988766655433
No 101
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=39.48 E-value=1.3e+02 Score=30.91 Aligned_cols=59 Identities=14% Similarity=0.343 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT 333 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~ 333 (389)
..|.+|+++|..-|.+..++-.+--+.-.++.++..+|+..++.|+.++..-+ ++..|-
T Consensus 116 vtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~ 174 (391)
T KOG1850|consen 116 VTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLG 174 (391)
T ss_pred hHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 45889999999999999999988889999999999999999999999888777 666553
No 102
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=39.21 E-value=2.2e+02 Score=26.81 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 016449 314 EMQAIDELLKQRNEIHASYT 333 (389)
Q Consensus 314 ~~~~~~~ll~~r~~~~~~~~ 333 (389)
..+....|-.+|+++|.-|.
T Consensus 112 L~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 112 LEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544
No 103
>PRK14147 heat shock protein GrpE; Provisional
Probab=38.26 E-value=1.6e+02 Score=27.34 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 275 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 275 ~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
....++.+|...+.|+..++..|.-+++-|+-.-.|..+|.+.+
T Consensus 19 ~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~ 62 (172)
T PRK14147 19 ETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQA 62 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778888899999999999999999999999998887654
No 104
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.18 E-value=44 Score=33.15 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=26.0
Q ss_pred cCCceEEEEecchhhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 016449 261 KAGTHVFAVYEEKENLRAVEAEILSKRAELSKFESEYREV 300 (389)
Q Consensus 261 ~~g~h~~~vy~~~~~~~~~e~~~~~k~~el~~f~~ey~~~ 300 (389)
-||+|+..+-.-+++|..++.-|..|-.+|..=..--.+.
T Consensus 219 ~~~dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnL 258 (305)
T KOG3990|consen 219 DPGDHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNL 258 (305)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhcc
Confidence 3799998887777788888776666555554433333333
No 105
>PHA03161 hypothetical protein; Provisional
Probab=36.88 E-value=1.2e+02 Score=27.76 Aligned_cols=48 Identities=23% Similarity=0.229 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDEL 321 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~l 321 (389)
..|..|+.+|..|+.|+.-+-.==+.-+...++++.|+.+.++++..=
T Consensus 61 ~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~E 108 (150)
T PHA03161 61 GMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFE 108 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999888766666777777777766665544433
No 106
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=36.70 E-value=1.5e+02 Score=30.60 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=44.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 016449 272 EKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTAP 336 (389)
Q Consensus 272 ~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~~~ 336 (389)
..++|..=|..|-. .|...-.||++++.+..++..+|++-...|.++..+=.+|=..+-.+.
T Consensus 253 ~lekI~sREk~iN~---qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 253 TLEKIESREKYINN---QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554 555666789999999999999998888888888777777766665543
No 107
>PRK14145 heat shock protein GrpE; Provisional
Probab=36.39 E-value=2e+02 Score=27.35 Aligned_cols=46 Identities=13% Similarity=0.279 Sum_probs=40.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 273 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 273 ~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
...+..++.+|...+.++..++.-|.-+++.|+-.-.|..+|.+.+
T Consensus 44 ~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~ 89 (196)
T PRK14145 44 VDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEM 89 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888889999999999999999999999999999999987764
No 108
>PRK14140 heat shock protein GrpE; Provisional
Probab=36.31 E-value=1.9e+02 Score=27.35 Aligned_cols=46 Identities=28% Similarity=0.394 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 319 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
+.|.+.+.+|...+.++..++..|.-+++-|+-.-.|..++.+.+.
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~ 82 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAE 82 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888899999999999999999999999999999998876543
No 109
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.55 E-value=1.1e+02 Score=35.81 Aligned_cols=53 Identities=28% Similarity=0.388 Sum_probs=44.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 272 EKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 324 (389)
Q Consensus 272 ~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~ 324 (389)
....++.|+..|..++.||.+.++.|.+.+..=.....|+....+.-..||..
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~K 378 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAK 378 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34568899999999999999999999999888777777888887777777743
No 110
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=35.35 E-value=36 Score=30.36 Aligned_cols=62 Identities=16% Similarity=0.333 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhccCC
Q 016449 275 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA---------IDELLKQRNEIHASYTTAP 336 (389)
Q Consensus 275 ~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~---------~~~ll~~r~~~~~~~~~~~ 336 (389)
.+..++.+|....+++.+++.+|....+.|+.+..|+.++.+. +.+||.-.+.+...+-.++
T Consensus 12 ~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~ 82 (165)
T PF01025_consen 12 EIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAK 82 (165)
T ss_dssp HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-S
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555566666666666666667777777666666665442 4557777776666665553
No 111
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=35.20 E-value=1.4e+02 Score=29.76 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 016449 275 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEM 315 (389)
Q Consensus 275 ~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~ 315 (389)
+|...+..|....+||.+-|.|+.++..+.+++.+|+.+..
T Consensus 201 ~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 201 KLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666666677777777777777777777665543
No 112
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=35.12 E-value=2.5e+02 Score=28.38 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIH 329 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~ 329 (389)
++|+.+|.+......||.++|.|..++.+.=.++.....+..++..++.+.++...
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~ 105 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQ 105 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666555555544444444444444444444433
No 113
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=34.54 E-value=2.5e+02 Score=25.83 Aligned_cols=48 Identities=29% Similarity=0.368 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 279 VEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRN 326 (389)
Q Consensus 279 ~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~ 326 (389)
|-.+|-.-+.--.+=+.||.+++..|.|....=.+....+-+|+.+=+
T Consensus 96 vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE 143 (159)
T PF04949_consen 96 VNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESE 143 (159)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334456889999999999988777777666777766544
No 114
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.45 E-value=1.6e+02 Score=34.61 Aligned_cols=54 Identities=24% Similarity=0.413 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 276 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIH 329 (389)
Q Consensus 276 ~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~ 329 (389)
|.++|+++..+=+++.+++..-.+.+.+-.+.-+.++..+++.++|+.+|.+++
T Consensus 420 ~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lW 473 (1200)
T KOG0964|consen 420 IEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELW 473 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555555544
No 115
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.37 E-value=2.2e+02 Score=24.07 Aligned_cols=52 Identities=21% Similarity=0.387 Sum_probs=43.6
Q ss_pred hhhhHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 273 KENLRAVEAEILSK--RAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 324 (389)
Q Consensus 273 ~~~~~~~e~~~~~k--~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~ 324 (389)
...|..+|.+|..- +.++.+++-+=.++.....++..+++....-++=||.+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688899999888 99999999999999999999999998887766666654
No 116
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=33.21 E-value=1.4e+02 Score=26.10 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHH
Q 016449 275 NLRAVEAEILSKRAELSKFESEYR 298 (389)
Q Consensus 275 ~~~~~e~~~~~k~~el~~f~~ey~ 298 (389)
.|+..|.++..-|.++..++.+-.
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~ 47 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERD 47 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555544433
No 117
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.04 E-value=2.8e+02 Score=26.53 Aligned_cols=55 Identities=7% Similarity=0.189 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEI 328 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~ 328 (389)
.+|..++..+...+.++.+-+.+|..+...+..+..+|.+++..+=+.+-+=|+-
T Consensus 153 ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~ 207 (239)
T cd07647 153 KEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEE 207 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999999999999999999999998887776554443
No 118
>PRK09039 hypothetical protein; Validated
Probab=32.82 E-value=2.5e+02 Score=28.64 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA-IDELLKQRNEIHASY 332 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~-~~~ll~~r~~~~~~~ 332 (389)
.+|..++.||...-.+|...|....++..+++....++..-... +.+|-.-|.+++..+
T Consensus 144 ~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l 203 (343)
T PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRL 203 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45777777777777777777888888888888888887777644 888888888887444
No 119
>PRK14151 heat shock protein GrpE; Provisional
Probab=32.73 E-value=2.2e+02 Score=26.47 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=38.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 272 EKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 272 ~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
+...+..++++|...+.++..++..|.-+.+.|+-.-.|..+|.+.+
T Consensus 18 ~~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~ 64 (176)
T PRK14151 18 EAAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKA 64 (176)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788888888999999999999999999999988887654
No 120
>PRK14155 heat shock protein GrpE; Provisional
Probab=32.26 E-value=1.9e+02 Score=27.73 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 275 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 275 ~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
.+.+.+.+|...+.|+..++..|.-+++.|+-.-.|..+|.+.+
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 57 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDA 57 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778888889999999999999999999999999887654
No 121
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.85 E-value=2.7e+02 Score=26.54 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYR 298 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~ 298 (389)
+.|..+|.++..-+++|+....++.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4455666666666666666555544
No 122
>PRK14153 heat shock protein GrpE; Provisional
Probab=31.53 E-value=1.7e+02 Score=27.84 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
+++...+.+|...+.++..++..|.-+++.|+-.-.|..++.+.+
T Consensus 33 ~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~ 77 (194)
T PRK14153 33 PEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEEN 77 (194)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677778888888899999999999999999999888887654
No 123
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=30.95 E-value=2.8e+02 Score=22.23 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIH 329 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~ 329 (389)
.-+.+++..+..-..++.....|=.+....-.+++++.....+.++.+...=.++=
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g 81 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLG 81 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45888899999999999999999999999999999999999999998887655543
No 124
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=30.79 E-value=2.9e+02 Score=27.25 Aligned_cols=49 Identities=31% Similarity=0.438 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRN 326 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~ 326 (389)
+++++.-+.--.-++||..+|.||.++..+.+ ++..|...+.++++.+.
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk----~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLK----RLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhch
Confidence 33444434444445556666666666554433 34445555566666655
No 125
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=30.77 E-value=3.2e+02 Score=28.35 Aligned_cols=78 Identities=18% Similarity=0.334 Sum_probs=47.3
Q ss_pred chH-hhhhccCCcccceeeccCCceEEEEe-cchhhhHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHH
Q 016449 242 DAA-FFKKLDGFQPCEITELKAGTHVFAVY-EEKENLRAVEAEILSKRAELSKFESEY------REVLAQFTEMTSRYAQ 313 (389)
Q Consensus 242 ~~~-~f~~l~~f~~~~~~~l~~g~h~~~vy-~~~~~~~~~e~~~~~k~~el~~f~~ey------~~~~~~~~~~~~~~~~ 313 (389)
+.+ |-..|+.|.. +-+++-.| +..+-+..++.+|....+++.+++... ..-++..++-...+.+
T Consensus 216 ~~~Yf~~l~~~f~d--------~a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k 287 (406)
T PF02388_consen 216 SLEYFENLYDAFGD--------KAKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEK 287 (406)
T ss_dssp -HHHHHHHHHHCCC--------CEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCC--------CeEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 344 4455677722 33344444 777778888888888888888888764 3344445555556666
Q ss_pred HHHHHHHHHHHHHH
Q 016449 314 EMQAIDELLKQRNE 327 (389)
Q Consensus 314 ~~~~~~~ll~~r~~ 327 (389)
+.+++++|+++...
T Consensus 288 ~~~~~~~~~~~~~~ 301 (406)
T PF02388_consen 288 RIEEAEELIAEYGD 301 (406)
T ss_dssp HHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHhcCC
Confidence 66666666655443
No 126
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=30.72 E-value=2.5e+02 Score=29.40 Aligned_cols=63 Identities=19% Similarity=0.358 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 016449 273 KENLRAVEAEILSKRAELSKFESEYREV-------------LAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 335 (389)
Q Consensus 273 ~~~~~~~e~~~~~k~~el~~f~~ey~~~-------------~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~~ 335 (389)
.++++.++.++...+++|.+++...... ++.+..+...+.+..+.+.+|..+..++..++...
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556777777777777777777764333 34666777777777777888888887777777655
No 127
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=30.45 E-value=1.7e+02 Score=24.93 Aligned_cols=57 Identities=21% Similarity=0.381 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhHH--HHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhccC
Q 016449 279 VEAEILSKRAELSKFES--EYREVLA-QFTEMTSRYA---QEMQAIDELLKQRNEIHASYTTA 335 (389)
Q Consensus 279 ~e~~~~~k~~el~~f~~--ey~~~~~-~~~~~~~~~~---~~~~~~~~ll~~r~~~~~~~~~~ 335 (389)
+.++|..||.||..++. ++...++ +.+++.+++. .-++.|..+|+.=+.+..++.-+
T Consensus 2 l~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~Is~A 64 (103)
T PF08654_consen 2 LQARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFRAISMA 64 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHHHHH
Confidence 57899999999987763 3333333 3333444443 44567888888888888877655
No 128
>PRK14141 heat shock protein GrpE; Provisional
Probab=30.26 E-value=2.1e+02 Score=27.41 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 277 RAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 319 (389)
Q Consensus 277 ~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
...|.+|...+.|+..++..|.-+++.|+-.-.|..+|.+.+.
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~ 76 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADAR 76 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888889999999999999999999988876543
No 129
>PRK14160 heat shock protein GrpE; Provisional
Probab=29.99 E-value=2.1e+02 Score=27.58 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
..+..++.++...+.++..++..|.-+++-|+-.-.|..++.+.+
T Consensus 61 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 105 (211)
T PRK14160 61 DENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGI 105 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888889999999999999999999999999887654
No 130
>PRK14146 heat shock protein GrpE; Provisional
Probab=28.98 E-value=2.8e+02 Score=26.73 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 273 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 273 ~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
.+.+..++.+|...+.++..++..|.-+++-|+-...|..++...+
T Consensus 53 ~~~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~ 98 (215)
T PRK14146 53 AETETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSI 98 (215)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777788888999999999999999999999999999887654
No 131
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=28.83 E-value=2.6e+02 Score=25.74 Aligned_cols=33 Identities=9% Similarity=0.387 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 016449 279 VEAEILSKRAELSKFESEYREVLAQFTEMTSRY 311 (389)
Q Consensus 279 ~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~ 311 (389)
+=.++...|++|..++.+|.-++..|+.|+..+
T Consensus 70 ~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~ 102 (157)
T COG3352 70 QKKQLQDIKEELERLEENIKDLVSLYELVSRDF 102 (157)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677888888888888888888888888743
No 132
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.91 E-value=3.3e+02 Score=25.20 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLK 323 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~ 323 (389)
++|...+..|..|..-+..++.||....-.|..+-.|+.....+=.+|+.
T Consensus 130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888888888888888888888888887777777764
No 133
>PRK14144 heat shock protein GrpE; Provisional
Probab=27.90 E-value=3.1e+02 Score=26.13 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
..+..++..|...+.|+..++..|.-+++.|+-.-.|..+|.+.+
T Consensus 45 ~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~ 89 (199)
T PRK14144 45 PSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANA 89 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888899999999999999999999999999887654
No 134
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.71 E-value=3e+02 Score=26.75 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYR 298 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~ 298 (389)
+.+...|.-|..-++|++.+..|+.
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 135
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=27.57 E-value=2.2e+02 Score=25.90 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 016449 273 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQE 314 (389)
Q Consensus 273 ~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~ 314 (389)
.+.+..++..|..++.|+..+..==+.-....++++.|..+.
T Consensus 60 ~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eL 101 (146)
T PF05852_consen 60 KNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEEL 101 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 466888888888888888776553233334444444444443
No 136
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.48 E-value=3.8e+02 Score=23.28 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDE 320 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ 320 (389)
+.+.+.+.++..-|.+|..-...+++|...|+.=+.++..-.+++..
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~ 63 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQ 63 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45677888889999999999999999999999777777666444433
No 137
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=27.45 E-value=3.2e+02 Score=27.05 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLK 323 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~ 323 (389)
.+++.+.+.+..-+.++.+-+.+|.+++..-...+.+|.++|..+=+..-
T Consensus 168 ~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q 217 (258)
T cd07681 168 EQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQ 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999887655443
No 138
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.38 E-value=3.8e+02 Score=26.75 Aligned_cols=58 Identities=16% Similarity=0.323 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTS---RYAQEMQAIDELLKQRNEIHAS 331 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~---~~~~~~~~~~~ll~~r~~~~~~ 331 (389)
.+.+.++.+|...=+++...+.+=.+..+++++.-. +++++-.++++=|.+|++++..
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777777777777777777777777665 5555555566668889888865
No 139
>PRK14157 heat shock protein GrpE; Provisional
Probab=27.36 E-value=2e+02 Score=28.04 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 278 AVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 278 ~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
.+|.+|...+.|+..++..|.-+++.|+-.-.|..+|.+.+
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~ 121 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRF 121 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777778888888888887777776654
No 140
>PHA02562 46 endonuclease subunit; Provisional
Probab=27.33 E-value=3.2e+02 Score=28.88 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 016449 292 KFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 335 (389)
Q Consensus 292 ~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~~ 335 (389)
..+.+|.++..+..+...++.+.+..+.++..++..+-......
T Consensus 327 ~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 327 EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666666666767767766666555443
No 141
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=27.01 E-value=2.6e+02 Score=26.85 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=32.0
Q ss_pred eeccCCceEEEEe--cchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 016449 258 TELKAGTHVFAVY--EEKENLRAVEAEILSKRAELSKFESEYREVLAQF 304 (389)
Q Consensus 258 ~~l~~g~h~~~vy--~~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~ 304 (389)
..++.|+=|+-+. +...++++.++++...+.+|...+.+|...+..+
T Consensus 46 ~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~ 94 (322)
T TIGR01730 46 QKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLV 94 (322)
T ss_pred CEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788788777 3335577777888888877777777766554433
No 142
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.18 E-value=3.7e+02 Score=22.18 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLK 323 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~ 323 (389)
.+|+.+.+....-=.||.+.+.+-........||..|+..-++.|..+|.
T Consensus 39 ~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 39 EEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44666666666666778888888888888888888999988888888774
No 143
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.31 E-value=5.2e+02 Score=24.11 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=15.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 289 ELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIH 329 (389)
Q Consensus 289 el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~ 329 (389)
++..++.|..+...+-.++..++........+++...+..|
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~ 168 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH 168 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 144
>PRK14156 heat shock protein GrpE; Provisional
Probab=25.06 E-value=2.8e+02 Score=25.96 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 278 AVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 278 ~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
..+++|...+.++..++..|.-+++.|+-.-.|..++...+
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~ 71 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQL 71 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788889999999999999999999999988886653
No 145
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins.; PDB: 1ZTP_B 2Q4K_C.
Probab=24.97 E-value=92 Score=30.52 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=12.0
Q ss_pred cCCceEEEEe-cchhhhHHHHHHH
Q 016449 261 KAGTHVFAVY-EEKENLRAVEAEI 283 (389)
Q Consensus 261 ~~g~h~~~vy-~~~~~~~~~e~~~ 283 (389)
..+.||+||| .......+|..-+
T Consensus 193 ~~~~~vIcVYT~Df~D~~DV~RVl 216 (243)
T PF08939_consen 193 GDDRRVICVYTPDFRDREDVMRVL 216 (243)
T ss_dssp TSS-EEEEEEES-TT-HHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
Confidence 3688999999 3333344443333
No 146
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=24.91 E-value=1.6e+02 Score=24.07 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=29.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 016449 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNA 53 (389)
Q Consensus 18 ~~d~YeiLGV~~~As~~EIKkAYrklalk~HPDKn~ 53 (389)
++|--+++|+++-|++.||+.|-++..++..--..|
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 567778899999999999999998888876544443
No 147
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=24.86 E-value=43 Score=24.29 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=10.0
Q ss_pred ccCCceEEEEe
Q 016449 260 LKAGTHVFAVY 270 (389)
Q Consensus 260 l~~g~h~~~vy 270 (389)
|+||+||.|--
T Consensus 2 l~pG~~V~CAV 12 (42)
T PF09866_consen 2 LSPGSFVRCAV 12 (42)
T ss_pred ccCCCEEEEEe
Confidence 68999999987
No 148
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.67 E-value=2.4e+02 Score=21.62 Aligned_cols=8 Identities=25% Similarity=0.572 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 016449 315 MQAIDELL 322 (389)
Q Consensus 315 ~~~~~~ll 322 (389)
.+.|+.||
T Consensus 34 ~envk~ll 41 (55)
T PF05377_consen 34 EENVKDLL 41 (55)
T ss_pred HHHHHHHH
Confidence 33344444
No 149
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=24.52 E-value=5e+02 Score=23.00 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016449 276 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTT 334 (389)
Q Consensus 276 ~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~ 334 (389)
-+.||.++...=+|+..++.+..+-..++.+-.+...++-....++-..|++.+..+..
T Consensus 22 ~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~ 80 (126)
T PF09403_consen 22 TASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQ 80 (126)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35666666666666666666666666666666666666656666666677776665544
No 150
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.88 E-value=2.4e+02 Score=21.61 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 016449 279 VEAEILSKRAELSKFESEYREVLAQFTEMT 308 (389)
Q Consensus 279 ~e~~~~~k~~el~~f~~ey~~~~~~~~~~~ 308 (389)
++.++...|+++.+.+.--+.++.-|+-|+
T Consensus 19 vk~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 19 VKKENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443
No 151
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=23.83 E-value=5.8e+02 Score=28.08 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT 333 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~ 333 (389)
+.|++++.++...++|+.+.+.|-++....+. ....+..+.|..+.+.|+...
T Consensus 215 ~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~ 267 (646)
T PRK05771 215 ELIREIKEELEEIEKERESLLEELKELAKKYL-------EELLALYEYLEIELERAEALS 267 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444443 333334444444444444433
No 152
>smart00721 BAR BAR domain.
Probab=23.75 E-value=1.8e+02 Score=26.78 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=27.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 289 ELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEI 328 (389)
Q Consensus 289 el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~ 328 (389)
+|.+.+.|+..|+..|+++...+..+ +-.|+..|...
T Consensus 171 kl~~~e~el~~ak~~fe~~~~~l~~~---l~~l~~~~~~~ 207 (239)
T smart00721 171 KLAKAEEELRKAKQEFEESNAQLVEE---LPQLVASRVDF 207 (239)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHh
Confidence 56678888888889998888888777 44556666553
No 153
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.67 E-value=4.5e+02 Score=22.79 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=34.8
Q ss_pred cCCceEEEEecchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 016449 261 KAGTHVFAVYEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQE 314 (389)
Q Consensus 261 ~~g~h~~~vy~~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~ 314 (389)
--|..+|.=|.-.+-+..++..+..-...+.+++.+..+...+++++.....+.
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348888877766666666666666666666666666666666666655554443
No 154
>PRK14161 heat shock protein GrpE; Provisional
Probab=23.64 E-value=3.9e+02 Score=24.94 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 276 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 276 ~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
+...+.+|...+.++..++..|.-+++.|+-...|..++.+.+
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~ 63 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEA 63 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888899999999999999988887654
No 155
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.52 E-value=5.1e+02 Score=25.95 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 335 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~~ 335 (389)
.+....+..|..++.||...+.|-.++.+...++..|.++-...+-+|=-+|-.+...++-+
T Consensus 193 ~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 193 EEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888899999999999999999999999999999999988888888888766544
No 156
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=23.19 E-value=4.4e+02 Score=25.48 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELL 322 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll 322 (389)
.+++.+++.+..-+.++.+-+.+|..++..+.++..+|.+++...-+.+
T Consensus 154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~f 202 (240)
T cd07672 154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACEFF 202 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999999999999999999999976543333
No 157
>PRK11637 AmiB activator; Provisional
Probab=22.98 E-value=4.7e+02 Score=27.12 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q 016449 276 LRAVEAEILSKR 287 (389)
Q Consensus 276 ~~~~e~~~~~k~ 287 (389)
|++++.+|....
T Consensus 49 l~~l~~qi~~~~ 60 (428)
T PRK11637 49 LKSIQQDIAAKE 60 (428)
T ss_pred HHHHHHHHHHHH
Confidence 444444433333
No 158
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=22.76 E-value=5.4e+02 Score=24.90 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLK 323 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~ 323 (389)
.+|..++.++-..+.++.+=+.+|..++..+.++..+|.+++..+=+.+-
T Consensus 153 keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q 202 (242)
T cd07671 153 KQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVFQ 202 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999998877655443
No 159
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=22.75 E-value=4.7e+02 Score=22.65 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=34.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 273 KENLRAVEAEILSKRAELSKFESEYR---------EVLAQFTEMTSRYAQEMQAIDELLKQRNEIH 329 (389)
Q Consensus 273 ~~~~~~~e~~~~~k~~el~~f~~ey~---------~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~ 329 (389)
..-+++.|+=-+.||.+|+..++|+. +-+.+=+++..|+.........||..=+..|
T Consensus 14 lD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~~ 79 (106)
T PF11594_consen 14 LDVARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQNQH 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34578899999999999998888753 3333344444444444444444444443333
No 160
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.75 E-value=5.2e+02 Score=22.60 Aligned_cols=38 Identities=16% Similarity=0.373 Sum_probs=25.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 284 LSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDEL 321 (389)
Q Consensus 284 ~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~l 321 (389)
.....++..++.++.+...+|..+..=|.+..+.++||
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL 101 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44455566666677777777777777777777777666
No 161
>PRK14159 heat shock protein GrpE; Provisional
Probab=22.34 E-value=2.4e+02 Score=26.29 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=37.0
Q ss_pred hhhHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAE-ILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 319 (389)
Q Consensus 274 ~~~~~~e~~-~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
+++++||.+ |...+.++..++..|.-+++-|+-...|..+|.+.+.
T Consensus 22 ~~~~~~~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~ 68 (176)
T PRK14159 22 ENLQNIEDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAM 68 (176)
T ss_pred hhHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777654 4567889999999999999999999999998876543
No 162
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.29 E-value=3.6e+02 Score=26.62 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 016449 276 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTS 309 (389)
Q Consensus 276 ~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~ 309 (389)
|+++|...+.--..+.++.-||-..+.+|+++-.
T Consensus 172 lk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 172 LKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 4444444444444444444444444555544443
No 163
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.25 E-value=3.2e+02 Score=26.02 Aligned_cols=27 Identities=4% Similarity=0.181 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 016449 273 KENLRAVEAEILSKRAELSKFESEYRE 299 (389)
Q Consensus 273 ~~~~~~~e~~~~~k~~el~~f~~ey~~ 299 (389)
..+|.+++++|...+.+.++-..|..+
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~ 125 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQ 125 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355777777777776665555444444
No 164
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.21 E-value=4.8e+02 Score=21.94 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHH
Q 016449 276 LRAVEAEILSKRAELSKFESEY 297 (389)
Q Consensus 276 ~~~~e~~~~~k~~el~~f~~ey 297 (389)
+-.|+..|..||.|+.......
T Consensus 9 ~~~~~~~l~~kr~e~~~~~~~~ 30 (126)
T PF13863_consen 9 MFLVQLALDTKREEIERREEQL 30 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444444333
No 165
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=21.97 E-value=4.5e+02 Score=22.90 Aligned_cols=53 Identities=19% Similarity=0.392 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHH--------HHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 016449 275 NLRAVEAEILSKR--------AELSKFESEYREVLAQFTEMTSRYAQE----MQAIDELLKQRNE 327 (389)
Q Consensus 275 ~~~~~e~~~~~k~--------~el~~f~~ey~~~~~~~~~~~~~~~~~----~~~~~~ll~~r~~ 327 (389)
.|+++|.++...| .||.+.+.=|.+.++.=..+..++..- .+.-.+||-+|+.
T Consensus 8 rIkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkLl~Ekeq 72 (111)
T PF12001_consen 8 RIKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKLLVEKEQ 72 (111)
T ss_pred HHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 5999999999888 577777777887776666665554432 2334567766655
No 166
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=21.69 E-value=2e+02 Score=28.89 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=28.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 284 LSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 324 (389)
Q Consensus 284 ~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~ 324 (389)
..-|..|.++..+|..-+.+|++++..++. .|..||++
T Consensus 103 sdYR~kL~qiR~iy~~ElekyeqaCneftt---hV~nlL~e 140 (334)
T KOG0774|consen 103 SDYRAKLLQIRQIYHNELEKYEQACNEFTT---HVMNLLRE 140 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 346777778888888899999988877654 47777765
No 167
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=21.29 E-value=4.5e+02 Score=28.95 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 016449 279 VEAEILSKRAELSKFESEYREVLAQFTE 306 (389)
Q Consensus 279 ~e~~~~~k~~el~~f~~ey~~~~~~~~~ 306 (389)
+|.+....+.++.+++.+........+.
T Consensus 162 Le~e~~~l~~~v~~l~~eL~~~~ee~e~ 189 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAELEQEEEEMEQ 189 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333333
No 168
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.27 E-value=4.3e+02 Score=25.93 Aligned_cols=52 Identities=27% Similarity=0.391 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEI 328 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~ 328 (389)
+.+..++.+|...+.+|.+.+.+..++.+..++.+..-.++ ..++..+|+++
T Consensus 117 ~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~---~~~~~~~~~~L 168 (239)
T COG1579 117 EEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE---GQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 45677777777778888888888888888777776655554 34455555544
No 169
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=21.17 E-value=3.2e+02 Score=22.04 Aligned_cols=34 Identities=21% Similarity=0.491 Sum_probs=27.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 284 LSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA 317 (389)
Q Consensus 284 ~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~ 317 (389)
...|-...++..+|..++..|..+..+|.+.+.+
T Consensus 67 ~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 67 RQQKLQREKLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456778889999999999999999888876543
No 170
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=21.07 E-value=4.9e+02 Score=23.05 Aligned_cols=33 Identities=15% Similarity=0.570 Sum_probs=20.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 291 SKFESEYREVLAQFTEMTSRYAQEMQAIDELLK 323 (389)
Q Consensus 291 ~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~ 323 (389)
+=|..||.+.+++|+.+...+.+++..-.+.|.
T Consensus 85 r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~ 117 (126)
T PF09403_consen 85 RWYKDEYKELLKKYKDLLNKLDKEIAEQEQIID 117 (126)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777776666544444333
No 171
>TIGR02616 tnaC_leader tryptophanase leader peptide. Members of this family are the apparent leader peptides of tryptophanase operons in Esherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae type b, and related species. All members of the seed alignment are examples ORFs upstream of tryptophanase, with a start codon, a conserved single Trp residue, and several other conserved residues. It is suggested (Konan KV and Yanofsky C) that the nascent peptide interacts with the ribosome once (if) the ribosome reaches the stop codon. Note that this model describes a much broader set (and shorter protein region) than Pfam model pfam08053.
Probab=20.97 E-value=52 Score=21.54 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=9.1
Q ss_pred CCceeeeccccc
Q 016449 373 KKKWFNIHLKAD 384 (389)
Q Consensus 373 ~~~~~~~~~~~~ 384 (389)
-+|||||.-+..
T Consensus 7 ~s~WfniD~rIs 18 (26)
T TIGR02616 7 LSKWFNIDNRIS 18 (26)
T ss_pred CCceEEcchhhe
Confidence 579999976654
No 172
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=20.89 E-value=6.3e+02 Score=24.83 Aligned_cols=64 Identities=16% Similarity=0.366 Sum_probs=55.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 016449 272 EKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 335 (389)
Q Consensus 272 ~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~~ 335 (389)
...++....+++...+..+..++.-..+++..|.+..+.+.+.+..+-..+..+......++..
T Consensus 242 ~~~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~Ia~~ 305 (306)
T PF04888_consen 242 LQKEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQSGDTQAQIASS 305 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4456778888888888889999999999999999999999999999999999998887776654
No 173
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=20.89 E-value=5.1e+02 Score=25.54 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 324 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~ 324 (389)
.++..+..++...+.++.+=+.+|..++....+.+.+|.+++..|=+-+-.
T Consensus 168 ~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~ 218 (258)
T cd07680 168 EQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 578888899999999999999999999999999999999999877555443
No 174
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=20.87 E-value=3.2e+02 Score=31.72 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT 333 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~ 333 (389)
+++...|.++..--+-+...|..-+++.-.-++.++|..++ +++|-+.|++|+--+-
T Consensus 113 n~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~l---e~eLsAk~~eIf~~~~ 169 (1265)
T KOG0976|consen 113 NKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKL---EDELSAKAHDIFMIGE 169 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHhhhhHHHHHHHH
Confidence 34555566666666666677777888888888899998888 8889999999876443
No 175
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=20.84 E-value=2.8e+02 Score=23.42 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHH
Q 016449 275 NLRAVEAEILSKRAELSKFES 295 (389)
Q Consensus 275 ~~~~~e~~~~~k~~el~~f~~ 295 (389)
.+.+|+++|...+++|.+.++
T Consensus 3 ~~s~I~~eIekLqe~lk~~e~ 23 (92)
T PF07820_consen 3 SSSKIREEIEKLQEQLKQAET 23 (92)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 356677777766666666554
No 176
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.73 E-value=1.5e+02 Score=23.25 Aligned_cols=39 Identities=18% Similarity=0.425 Sum_probs=27.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 016449 271 EEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTS 309 (389)
Q Consensus 271 ~~~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~ 309 (389)
.....++.+..++.....++.+.+.|+.+.+..-.....
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 21 SAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334557777788888888888888888777777666554
No 177
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=20.73 E-value=3.1e+02 Score=25.96 Aligned_cols=45 Identities=11% Similarity=0.287 Sum_probs=25.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Q 016449 289 ELSKFESEYREVLAQFTEMTS-RYAQEMQAIDELLKQRNEIHASYT 333 (389)
Q Consensus 289 el~~f~~ey~~~~~~~~~~~~-~~~~~~~~~~~ll~~r~~~~~~~~ 333 (389)
-|..-+.|+..|....+.+-. ...++...+.+.|+.|..+|+.|.
T Consensus 90 ai~~a~~e~~~~~~~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~ 135 (204)
T PF10368_consen 90 AIEKAKEEFKKAKKYIDKIEDEKLKKQAKELNEAMKKRYKSYDKLY 135 (204)
T ss_dssp HHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444443 356777888999999999998875
No 178
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.64 E-value=5.2e+02 Score=26.12 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 016449 273 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSR 310 (389)
Q Consensus 273 ~~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~ 310 (389)
.+++...+.+|..++.+|...+.+..+....|++.+..
T Consensus 227 ~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e 264 (344)
T PF12777_consen 227 EAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKE 264 (344)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888777664
No 179
>PRK14163 heat shock protein GrpE; Provisional
Probab=20.22 E-value=5.2e+02 Score=24.93 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 276 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 318 (389)
Q Consensus 276 ~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~ 318 (389)
+..++.+|...+.++..+...|.-+++.|+-.-.|..+|.+.+
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~ 84 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTV 84 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888889999999998888888886654
No 180
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=20.18 E-value=3.1e+02 Score=27.70 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016449 274 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 327 (389)
Q Consensus 274 ~~~~~~e~~~~~k~~el~~f~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~ 327 (389)
..|.+|.++|....+.-.+...|..+...+|..++..|..-.+.+..+|+.++-
T Consensus 114 ~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keL 167 (309)
T PF09728_consen 114 ATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKEL 167 (309)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 458899999999999989999999999999999999999888889998888764
No 181
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.13 E-value=6.6e+02 Score=25.29 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHhhHHH
Q 016449 276 LRAVEAEILSKRAELSKFESE 296 (389)
Q Consensus 276 ~~~~e~~~~~k~~el~~f~~e 296 (389)
|.++|.+-.....||.+.+.|
T Consensus 66 L~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
Done!