Query 016451
Match_columns 389
No_of_seqs 203 out of 1612
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:58:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 2E-115 4E-120 868.6 27.8 299 88-387 2-356 (361)
2 PLN02272 glyceraldehyde-3-phos 100.0 7E-109 1E-113 836.7 35.4 380 1-388 1-420 (421)
3 PLN02237 glyceraldehyde-3-phos 100.0 9E-109 2E-113 837.9 30.5 300 85-386 71-412 (442)
4 PTZ00023 glyceraldehyde-3-phos 100.0 3E-107 7E-112 807.7 30.3 297 88-385 1-336 (337)
5 PRK15425 gapA glyceraldehyde-3 100.0 5E-107 1E-111 804.7 30.1 293 88-383 1-330 (331)
6 PRK07403 glyceraldehyde-3-phos 100.0 1E-106 3E-111 803.1 29.7 293 90-385 2-335 (337)
7 PRK07729 glyceraldehyde-3-phos 100.0 3E-106 6E-111 801.9 29.7 298 88-388 1-336 (343)
8 PLN03096 glyceraldehyde-3-phos 100.0 2E-104 5E-109 799.3 30.5 299 85-385 56-393 (395)
9 PTZ00353 glycosomal glyceralde 100.0 2E-103 5E-108 781.0 29.2 297 88-387 1-338 (342)
10 PLN02358 glyceraldehyde-3-phos 100.0 9E-103 2E-107 776.8 31.0 296 89-384 5-337 (338)
11 COG0057 GapA Glyceraldehyde-3- 100.0 1E-102 2E-107 766.9 28.4 294 89-385 1-333 (335)
12 PRK08955 glyceraldehyde-3-phos 100.0 2E-101 5E-106 765.6 28.6 293 88-384 1-332 (334)
13 PRK13535 erythrose 4-phosphate 100.0 2E-101 5E-106 765.8 27.9 292 90-384 2-334 (336)
14 PRK08289 glyceraldehyde-3-phos 100.0 1E-100 3E-105 780.6 27.0 312 72-386 110-472 (477)
15 TIGR01534 GAPDH-I glyceraldehy 100.0 3E-100 7E-105 755.8 26.3 284 91-377 1-327 (327)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 1.3E-96 3E-101 729.7 25.9 284 91-377 1-325 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 1.8E-82 4E-87 607.4 10.6 250 100-385 1-285 (285)
18 PF00044 Gp_dh_N: Glyceraldehy 100.0 4.3E-51 9.2E-56 365.8 12.3 149 90-239 1-151 (151)
19 TIGR01546 GAPDH-II_archae glyc 100.0 2.3E-47 4.9E-52 379.2 16.8 200 92-318 1-243 (333)
20 smart00846 Gp_dh_N Glyceraldeh 100.0 3.3E-46 7.2E-51 333.1 17.1 148 90-239 1-149 (149)
21 PF02800 Gp_dh_C: Glyceraldehy 100.0 1.9E-40 4E-45 298.5 5.7 121 244-365 1-157 (157)
22 PRK04207 glyceraldehyde-3-phos 100.0 2.1E-37 4.5E-42 308.8 17.2 224 89-342 1-273 (341)
23 PRK14874 aspartate-semialdehyd 100.0 1.3E-28 2.7E-33 244.7 14.7 176 90-297 2-201 (334)
24 TIGR01296 asd_B aspartate-semi 99.9 1.3E-26 2.8E-31 231.2 15.6 175 91-297 1-204 (339)
25 PRK06901 aspartate-semialdehyd 99.9 7.3E-26 1.6E-30 223.9 12.9 194 89-316 3-253 (322)
26 COG0136 Asd Aspartate-semialde 99.9 6.6E-23 1.4E-27 203.5 15.9 183 89-300 1-204 (334)
27 TIGR01745 asd_gamma aspartate- 99.9 3.3E-23 7.1E-28 208.7 11.7 154 90-270 1-165 (366)
28 PRK06728 aspartate-semialdehyd 99.9 4.1E-21 9E-26 192.5 15.9 179 90-297 6-209 (347)
29 PRK06598 aspartate-semialdehyd 99.8 3.6E-20 7.7E-25 187.1 14.9 155 90-270 2-166 (369)
30 PRK08040 putative semialdehyde 99.8 3.8E-19 8.3E-24 177.8 18.7 177 88-296 3-201 (336)
31 PRK08664 aspartate-semialdehyd 99.8 6.6E-19 1.4E-23 176.1 17.7 186 88-300 2-202 (349)
32 TIGR00978 asd_EA aspartate-sem 99.8 2.8E-19 6E-24 178.3 14.1 220 90-335 1-282 (341)
33 PRK05671 aspartate-semialdehyd 99.8 2.9E-17 6.3E-22 164.3 18.4 176 90-298 5-202 (336)
34 PLN02383 aspartate semialdehyd 99.7 3.9E-17 8.6E-22 163.7 15.2 191 88-310 6-223 (344)
35 PRK00436 argC N-acetyl-gamma-g 99.6 1.2E-13 2.5E-18 138.3 18.9 156 88-270 1-183 (343)
36 PRK11863 N-acetyl-gamma-glutam 99.5 3.9E-13 8.5E-18 133.6 14.7 139 88-270 1-147 (313)
37 PLN02968 Probable N-acetyl-gam 99.5 2.7E-13 5.8E-18 138.0 12.8 166 76-270 27-218 (381)
38 KOG4777 Aspartate-semialdehyde 99.4 1.1E-13 2.4E-18 133.6 4.9 219 91-338 5-242 (361)
39 TIGR01850 argC N-acetyl-gamma- 99.4 7.6E-13 1.7E-17 132.7 10.9 157 90-271 1-184 (346)
40 PRK08300 acetaldehyde dehydrog 99.4 5.3E-13 1.2E-17 132.0 9.4 152 89-269 4-160 (302)
41 TIGR01851 argC_other N-acetyl- 99.2 3.2E-11 6.9E-16 119.8 9.7 137 90-270 2-146 (310)
42 TIGR03215 ac_ald_DH_ac acetald 99.2 6.5E-11 1.4E-15 116.5 10.8 151 89-270 1-155 (285)
43 PF01118 Semialdhyde_dh: Semia 98.6 2.7E-08 5.9E-13 85.1 4.1 111 91-227 1-118 (121)
44 COG0002 ArgC Acetylglutamate s 98.1 7.1E-05 1.5E-09 75.7 14.0 141 88-254 1-167 (349)
45 PRK13301 putative L-aspartate 97.9 1.9E-05 4.2E-10 77.3 7.0 145 88-268 1-149 (267)
46 smart00859 Semialdhyde_dh Semi 97.8 3.9E-05 8.5E-10 65.2 6.0 111 91-227 1-120 (122)
47 PRK13303 L-aspartate dehydroge 97.8 6.7E-05 1.5E-09 72.9 7.6 92 90-211 2-93 (265)
48 TIGR01921 DAP-DH diaminopimela 97.6 0.00019 4.1E-09 72.3 8.1 90 89-211 3-92 (324)
49 PRK06270 homoserine dehydrogen 97.5 0.00037 8E-09 70.2 8.2 35 88-122 1-44 (341)
50 TIGR00036 dapB dihydrodipicoli 97.4 0.00027 5.8E-09 68.9 5.8 95 90-208 2-97 (266)
51 COG1712 Predicted dinucleotide 97.3 0.00077 1.7E-08 65.1 7.2 92 90-211 1-93 (255)
52 PRK13302 putative L-aspartate 97.2 0.001 2.2E-08 65.0 7.7 86 89-203 6-92 (271)
53 PRK13304 L-aspartate dehydroge 97.1 0.0011 2.3E-08 64.5 7.1 89 90-209 2-91 (265)
54 PRK00048 dihydrodipicolinate r 97.1 0.00096 2.1E-08 64.6 6.1 87 90-208 2-89 (257)
55 PRK08374 homoserine dehydrogen 97.0 0.00047 1E-08 69.5 3.3 35 88-122 1-44 (336)
56 COG0289 DapB Dihydrodipicolina 97.0 0.0027 5.8E-08 62.4 8.2 102 88-212 1-103 (266)
57 PF01113 DapB_N: Dihydrodipico 96.9 0.0012 2.5E-08 57.2 4.1 33 90-122 1-34 (124)
58 PRK11579 putative oxidoreducta 96.8 0.0049 1.1E-07 61.5 8.6 93 89-212 4-97 (346)
59 PRK06392 homoserine dehydrogen 96.8 0.0028 6E-08 63.9 6.7 33 90-122 1-40 (326)
60 PRK06349 homoserine dehydrogen 96.8 0.0021 4.5E-08 66.7 5.8 93 89-211 3-105 (426)
61 PRK06813 homoserine dehydrogen 96.7 0.0025 5.4E-08 64.8 5.5 34 88-121 1-43 (346)
62 cd01076 NAD_bind_1_Glu_DH NAD( 96.6 0.028 6E-07 53.9 11.7 35 87-122 29-63 (227)
63 PF01408 GFO_IDH_MocA: Oxidore 96.6 0.0037 8.1E-08 52.1 5.0 94 90-212 1-95 (120)
64 PLN02775 Probable dihydrodipic 96.6 0.0055 1.2E-07 60.9 6.9 141 87-256 9-155 (286)
65 COG0460 ThrA Homoserine dehydr 96.1 0.016 3.4E-07 58.8 7.1 35 88-122 2-45 (333)
66 PLN02696 1-deoxy-D-xylulose-5- 96.0 0.14 3.1E-06 54.0 14.0 110 90-208 58-178 (454)
67 cd05211 NAD_bind_Glu_Leu_Phe_V 96.0 0.082 1.8E-06 50.3 11.1 34 88-122 22-55 (217)
68 PRK05447 1-deoxy-D-xylulose 5- 95.8 0.034 7.4E-07 57.5 8.5 110 90-208 2-120 (385)
69 PF03447 NAD_binding_3: Homose 95.7 0.0079 1.7E-07 50.8 2.9 83 96-210 1-89 (117)
70 PRK09414 glutamate dehydrogena 95.4 0.071 1.5E-06 56.1 9.1 100 89-208 232-341 (445)
71 PRK10206 putative oxidoreducta 95.4 0.036 7.8E-07 55.7 6.5 95 89-212 1-97 (344)
72 COG0673 MviM Predicted dehydro 94.7 0.14 3.1E-06 49.9 8.6 96 88-211 2-99 (342)
73 PLN02700 homoserine dehydrogen 94.7 0.052 1.1E-06 56.0 5.6 34 88-121 2-43 (377)
74 PLN02477 glutamate dehydrogena 94.6 0.32 6.9E-06 50.8 11.1 33 89-122 206-238 (410)
75 COG4091 Predicted homoserine d 94.6 0.053 1.1E-06 55.7 5.2 93 89-189 17-112 (438)
76 COG0569 TrkA K+ transport syst 94.4 0.082 1.8E-06 50.4 6.0 99 90-213 1-103 (225)
77 PRK09436 thrA bifunctional asp 94.4 0.047 1E-06 61.4 4.9 35 87-121 463-505 (819)
78 TIGR02130 dapB_plant dihydrodi 94.4 0.081 1.7E-06 52.5 5.9 95 90-211 1-102 (275)
79 cd05313 NAD_bind_2_Glu_DH NAD( 94.2 0.22 4.8E-06 48.8 8.5 104 89-208 38-151 (254)
80 PF02826 2-Hacid_dh_C: D-isome 94.1 0.061 1.3E-06 49.0 4.3 31 90-121 37-67 (178)
81 KOG4354 N-acetyl-gamma-glutamy 93.6 0.54 1.2E-05 46.4 9.8 239 89-368 19-309 (340)
82 PRK09466 metL bifunctional asp 93.6 0.053 1.2E-06 60.9 3.4 34 88-121 457-499 (810)
83 PTZ00079 NADP-specific glutama 93.1 0.44 9.6E-06 50.4 9.1 102 89-205 237-348 (454)
84 cd01075 NAD_bind_Leu_Phe_Val_D 92.6 0.54 1.2E-05 44.0 8.0 30 90-121 29-58 (200)
85 PLN00016 RNA-binding protein; 92.5 0.39 8.5E-06 48.3 7.5 35 86-121 49-88 (378)
86 PRK05472 redox-sensing transcr 92.5 0.3 6.4E-06 45.8 6.1 95 90-212 85-180 (213)
87 COG4569 MhpF Acetaldehyde dehy 92.4 0.6 1.3E-05 45.1 8.1 133 89-253 4-144 (310)
88 COG2344 AT-rich DNA-binding pr 92.4 0.19 4.1E-06 47.7 4.6 94 90-211 85-179 (211)
89 PRK08229 2-dehydropantoate 2-r 92.1 1.3 2.9E-05 43.8 10.5 33 88-121 1-33 (341)
90 CHL00194 ycf39 Ycf39; Provisio 91.9 0.49 1.1E-05 46.3 7.2 31 90-121 1-32 (317)
91 PRK08410 2-hydroxyacid dehydro 91.7 0.19 4.1E-06 50.2 4.1 31 89-120 145-175 (311)
92 PRK14030 glutamate dehydrogena 91.5 1.3 2.8E-05 46.8 10.1 102 89-204 228-338 (445)
93 PRK06487 glycerate dehydrogena 91.4 0.21 4.6E-06 49.9 4.1 31 90-121 149-179 (317)
94 PF03435 Saccharop_dh: Sacchar 91.2 0.16 3.5E-06 51.3 3.1 96 92-209 1-96 (386)
95 PRK06932 glycerate dehydrogena 90.8 0.26 5.7E-06 49.3 4.1 30 90-120 148-177 (314)
96 COG2910 Putative NADH-flavin r 90.7 0.96 2.1E-05 43.0 7.4 31 90-121 1-32 (211)
97 PF05368 NmrA: NmrA-like famil 90.1 0.34 7.4E-06 44.9 3.9 95 92-210 1-102 (233)
98 PLN02928 oxidoreductase family 90.1 0.33 7.2E-06 49.3 4.1 31 90-121 160-190 (347)
99 PLN02712 arogenate dehydrogena 90.0 0.44 9.5E-06 52.6 5.3 61 56-121 340-400 (667)
100 COG0111 SerA Phosphoglycerate 89.9 0.36 7.7E-06 48.8 4.1 30 90-120 143-172 (324)
101 PF03446 NAD_binding_2: NAD bi 89.9 0.45 9.7E-06 42.6 4.4 40 90-133 2-41 (163)
102 PRK07574 formate dehydrogenase 89.7 0.36 7.9E-06 49.9 4.1 31 90-121 193-223 (385)
103 PRK06436 glycerate dehydrogena 89.5 0.4 8.6E-06 47.9 4.1 31 90-121 123-153 (303)
104 PF10727 Rossmann-like: Rossma 89.3 0.3 6.5E-06 43.0 2.7 32 89-121 10-41 (127)
105 PRK15409 bifunctional glyoxyla 89.2 0.43 9.4E-06 48.0 4.2 29 90-119 146-175 (323)
106 PRK14031 glutamate dehydrogena 89.2 1.5 3.2E-05 46.4 8.1 103 89-208 228-340 (444)
107 PRK11790 D-3-phosphoglycerate 89.2 0.43 9.2E-06 49.6 4.2 30 90-120 152-181 (409)
108 PRK13243 glyoxylate reductase; 89.1 0.44 9.5E-06 48.0 4.1 30 90-120 151-180 (333)
109 PRK07502 cyclohexadienyl dehyd 88.9 1.2 2.7E-05 43.7 7.1 32 89-120 6-38 (307)
110 COG1052 LdhA Lactate dehydroge 88.9 0.43 9.4E-06 48.2 3.9 30 90-120 147-176 (324)
111 PRK11559 garR tartronate semia 88.8 0.51 1.1E-05 45.9 4.2 32 88-120 1-32 (296)
112 PLN02712 arogenate dehydrogena 88.6 0.74 1.6E-05 50.8 5.8 32 89-121 52-83 (667)
113 COG1063 Tdh Threonine dehydrog 88.5 2 4.4E-05 43.3 8.4 98 91-209 171-269 (350)
114 PRK11199 tyrA bifunctional cho 88.4 1.6 3.6E-05 44.6 7.8 31 89-120 98-129 (374)
115 PF02629 CoA_binding: CoA bind 88.3 0.41 8.8E-06 39.4 2.7 90 90-210 4-94 (96)
116 PLN02819 lysine-ketoglutarate 88.3 1.3 2.8E-05 51.4 7.6 91 90-203 570-673 (1042)
117 PRK15469 ghrA bifunctional gly 88.2 0.57 1.2E-05 46.9 4.2 31 90-121 137-167 (312)
118 PRK08306 dipicolinate synthase 88.1 0.97 2.1E-05 44.8 5.7 32 89-121 152-183 (296)
119 PF03807 F420_oxidored: NADP o 88.1 1 2.2E-05 36.1 4.9 41 91-133 1-43 (96)
120 TIGR03649 ergot_EASG ergot alk 88.0 1.5 3.3E-05 41.7 6.9 30 91-121 1-31 (285)
121 PRK12480 D-lactate dehydrogena 88.0 0.61 1.3E-05 47.0 4.3 30 90-120 147-176 (330)
122 TIGR03736 PRTRC_ThiF PRTRC sys 87.8 0.77 1.7E-05 44.8 4.7 103 89-196 11-124 (244)
123 PF02774 Semialdhyde_dhC: Semi 87.8 0.32 6.8E-06 44.8 2.0 52 248-299 1-65 (184)
124 PF13380 CoA_binding_2: CoA bi 87.7 1.4 3E-05 37.8 5.8 83 91-211 2-88 (116)
125 COG1748 LYS9 Saccharopine dehy 87.6 1.8 3.8E-05 45.1 7.4 98 90-209 2-99 (389)
126 cd00755 YgdL_like Family of ac 87.5 0.64 1.4E-05 44.8 4.0 154 89-258 11-172 (231)
127 PLN02306 hydroxypyruvate reduc 87.3 0.67 1.5E-05 47.9 4.2 30 90-120 166-196 (386)
128 PLN03209 translocon at the inn 87.1 2.3 5.1E-05 46.4 8.3 53 67-120 58-111 (576)
129 PRK15438 erythronate-4-phospha 87.0 0.71 1.5E-05 47.7 4.1 30 90-120 117-146 (378)
130 KOG1203 Predicted dehydrogenas 86.9 1.9 4.1E-05 45.2 7.2 55 64-119 54-109 (411)
131 PLN03139 formate dehydrogenase 86.9 0.69 1.5E-05 47.9 4.0 30 90-120 200-229 (386)
132 PRK07819 3-hydroxybutyryl-CoA 86.6 1.7 3.6E-05 42.8 6.4 147 91-256 7-179 (286)
133 PLN02256 arogenate dehydrogena 86.5 0.88 1.9E-05 45.4 4.4 34 87-121 34-67 (304)
134 PTZ00117 malate dehydrogenase; 86.3 2.6 5.6E-05 42.2 7.6 23 90-112 6-28 (319)
135 TIGR01761 thiaz-red thiazoliny 85.6 2.1 4.6E-05 43.6 6.7 94 89-212 3-99 (343)
136 cd08230 glucose_DH Glucose deh 85.6 7.4 0.00016 38.5 10.5 95 91-209 175-269 (355)
137 PRK11880 pyrroline-5-carboxyla 85.1 0.76 1.6E-05 43.9 3.1 25 88-112 1-25 (267)
138 PRK13403 ketol-acid reductoiso 84.7 1.1 2.5E-05 45.6 4.3 32 90-122 17-48 (335)
139 PRK07417 arogenate dehydrogena 84.6 1.1 2.5E-05 43.4 4.1 39 90-132 1-39 (279)
140 TIGR01327 PGDH D-3-phosphoglyc 84.0 1.1 2.5E-05 47.8 4.1 31 90-121 139-169 (525)
141 PRK00257 erythronate-4-phospha 84.0 1.2 2.6E-05 46.1 4.1 30 90-120 117-146 (381)
142 PRK06223 malate dehydrogenase; 83.9 5.3 0.00011 39.2 8.5 30 90-119 3-32 (307)
143 COG3804 Uncharacterized conser 83.4 1.4 3.1E-05 44.3 4.2 34 88-121 1-34 (350)
144 PRK06522 2-dehydropantoate 2-r 83.3 7.2 0.00016 37.5 9.0 30 90-120 1-30 (304)
145 PRK13581 D-3-phosphoglycerate 83.1 1.3 2.8E-05 47.4 4.1 31 90-121 141-171 (526)
146 cd00401 AdoHcyase S-adenosyl-L 83.0 2.6 5.7E-05 44.1 6.2 28 91-119 204-231 (413)
147 TIGR03366 HpnZ_proposed putati 82.8 10 0.00022 36.3 9.8 136 91-253 123-260 (280)
148 PRK08605 D-lactate dehydrogena 82.5 1.6 3.5E-05 44.0 4.3 31 90-120 147-177 (332)
149 PRK07634 pyrroline-5-carboxyla 81.9 2.2 4.7E-05 40.1 4.7 33 89-121 4-39 (245)
150 TIGR01202 bchC 2-desacetyl-2-h 81.7 7 0.00015 38.1 8.4 80 91-204 147-226 (308)
151 PLN02688 pyrroline-5-carboxyla 80.6 3.3 7.1E-05 39.5 5.5 33 90-122 1-36 (266)
152 PLN02572 UDP-sulfoquinovose sy 80.3 3.4 7.3E-05 43.1 5.9 42 78-120 36-78 (442)
153 PRK09880 L-idonate 5-dehydroge 80.2 9.5 0.00021 37.6 8.8 89 91-204 172-261 (343)
154 KOG2741 Dimeric dihydrodiol de 79.8 2.2 4.9E-05 43.7 4.2 36 87-122 4-41 (351)
155 PRK09599 6-phosphogluconate de 79.7 2.3 4.9E-05 41.9 4.1 31 90-121 1-31 (301)
156 PRK01438 murD UDP-N-acetylmura 79.6 8.1 0.00018 40.3 8.4 91 90-209 17-107 (480)
157 cd08239 THR_DH_like L-threonin 79.4 6 0.00013 38.5 7.0 96 91-209 166-262 (339)
158 COG0771 MurD UDP-N-acetylmuram 78.6 9.4 0.0002 40.5 8.5 89 89-204 7-95 (448)
159 TIGR02853 spore_dpaA dipicolin 78.5 2.5 5.5E-05 41.8 4.1 31 90-121 152-182 (287)
160 cd05291 HicDH_like L-2-hydroxy 78.3 4.3 9.3E-05 40.2 5.7 30 91-120 2-32 (306)
161 PRK15116 sulfur acceptor prote 78.3 2 4.4E-05 42.4 3.3 24 89-112 30-53 (268)
162 PRK12490 6-phosphogluconate de 78.1 2.7 5.9E-05 41.3 4.2 30 91-121 2-31 (299)
163 PF02670 DXP_reductoisom: 1-de 78.1 4.2 9.1E-05 36.1 4.9 108 92-208 1-119 (129)
164 PF13460 NAD_binding_10: NADH( 77.8 3.1 6.7E-05 36.7 4.1 29 92-121 1-30 (183)
165 COG1062 AdhC Zn-dependent alco 77.8 5.2 0.00011 41.3 6.1 96 91-208 188-284 (366)
166 cd08242 MDR_like Medium chain 77.7 16 0.00034 35.2 9.2 83 91-204 158-240 (319)
167 PRK08507 prephenate dehydrogen 77.4 3 6.6E-05 40.3 4.2 40 90-132 1-41 (275)
168 PTZ00082 L-lactate dehydrogena 77.2 4.1 8.9E-05 41.0 5.2 29 90-118 7-35 (321)
169 PF03721 UDPG_MGDP_dh_N: UDP-g 77.0 3.2 6.9E-05 38.4 4.0 36 90-129 1-36 (185)
170 TIGR00872 gnd_rel 6-phosphoglu 76.9 3 6.6E-05 41.0 4.1 39 90-132 1-39 (298)
171 COG0287 TyrA Prephenate dehydr 76.8 2.9 6.3E-05 41.5 4.0 25 88-112 2-26 (279)
172 PF00056 Ldh_1_N: lactate/mala 76.6 8.6 0.00019 33.9 6.5 79 90-190 1-81 (141)
173 PRK03369 murD UDP-N-acetylmura 76.3 11 0.00023 39.9 8.3 83 90-203 13-95 (488)
174 PRK06476 pyrroline-5-carboxyla 76.3 5 0.00011 38.4 5.3 38 90-129 1-39 (258)
175 PF01488 Shikimate_DH: Shikima 76.1 2.9 6.3E-05 36.4 3.3 93 90-210 13-108 (135)
176 TIGR01505 tartro_sem_red 2-hyd 75.7 3.1 6.7E-05 40.5 3.8 37 91-131 1-37 (291)
177 cd08298 CAD2 Cinnamyl alcohol 75.6 41 0.0009 32.3 11.6 84 91-206 170-253 (329)
178 cd01483 E1_enzyme_family Super 75.6 1.9 4.2E-05 37.4 2.1 44 91-135 1-45 (143)
179 KOG1502 Flavonol reductase/cin 74.9 10 0.00022 38.7 7.4 47 88-136 5-53 (327)
180 KOG0069 Glyoxylate/hydroxypyru 74.3 2.3 4.9E-05 43.5 2.5 25 88-112 161-185 (336)
181 PLN02602 lactate dehydrogenase 74.0 4.7 0.0001 41.3 4.7 143 90-261 38-201 (350)
182 PTZ00075 Adenosylhomocysteinas 73.7 4 8.7E-05 43.6 4.3 30 90-120 255-284 (476)
183 PRK14619 NAD(P)H-dependent gly 72.9 4.4 9.6E-05 39.9 4.2 31 90-121 5-35 (308)
184 cd08281 liver_ADH_like1 Zinc-d 72.5 18 0.00038 36.2 8.4 96 91-209 194-290 (371)
185 COG1179 Dinucleotide-utilizing 72.5 7.7 0.00017 38.3 5.6 115 91-218 32-163 (263)
186 PF02254 TrkA_N: TrkA-N domain 72.3 5.5 0.00012 32.8 4.0 34 92-129 1-34 (116)
187 PRK09496 trkA potassium transp 72.1 4.8 0.0001 41.2 4.3 31 90-121 1-31 (453)
188 PRK12491 pyrroline-5-carboxyla 72.0 5.1 0.00011 39.2 4.3 43 88-133 1-46 (272)
189 PRK07679 pyrroline-5-carboxyla 71.8 5.1 0.00011 38.9 4.2 31 90-120 4-37 (279)
190 TIGR03026 NDP-sugDHase nucleot 71.5 4.7 0.0001 41.5 4.1 30 90-120 1-30 (411)
191 PRK15059 tartronate semialdehy 71.4 5.1 0.00011 39.6 4.2 29 91-120 2-30 (292)
192 PRK03659 glutathione-regulated 71.3 6.6 0.00014 42.8 5.4 40 89-132 400-439 (601)
193 COG0334 GdhA Glutamate dehydro 71.1 28 0.0006 36.7 9.6 32 90-122 208-239 (411)
194 cd05294 LDH-like_MDH_nadp A la 71.1 8.3 0.00018 38.5 5.6 31 90-120 1-33 (309)
195 TIGR00243 Dxr 1-deoxy-D-xylulo 70.9 7.7 0.00017 40.5 5.5 110 90-208 2-122 (389)
196 PRK00094 gpsA NAD(P)H-dependen 70.8 5.6 0.00012 38.7 4.3 30 90-120 2-31 (325)
197 TIGR01019 sucCoAalpha succinyl 70.6 14 0.0003 37.0 7.0 90 90-212 7-98 (286)
198 PLN02657 3,8-divinyl protochlo 70.6 11 0.00023 38.6 6.5 31 90-121 61-92 (390)
199 PF00208 ELFV_dehydrog: Glutam 70.3 5 0.00011 39.0 3.8 102 90-208 33-144 (244)
200 PRK11064 wecC UDP-N-acetyl-D-m 70.2 5.5 0.00012 41.4 4.3 37 90-130 4-40 (415)
201 PRK08618 ornithine cyclodeamin 70.2 17 0.00038 36.3 7.7 91 90-209 128-219 (325)
202 PRK03562 glutathione-regulated 70.1 7.3 0.00016 42.6 5.4 39 90-132 401-439 (621)
203 KOG0068 D-3-phosphoglycerate d 69.5 6 0.00013 40.9 4.2 37 91-130 148-184 (406)
204 COG0039 Mdh Malate/lactate deh 68.8 7.2 0.00016 39.6 4.6 23 90-112 1-23 (313)
205 PRK05479 ketol-acid reductoiso 68.8 6 0.00013 40.3 4.1 31 90-121 18-48 (330)
206 PLN02586 probable cinnamyl alc 68.8 19 0.0004 36.1 7.6 29 91-120 186-214 (360)
207 PRK00066 ldh L-lactate dehydro 68.7 24 0.00053 35.3 8.4 30 90-119 7-37 (315)
208 cd05283 CAD1 Cinnamyl alcohol 68.5 39 0.00085 33.0 9.7 91 91-208 172-262 (337)
209 PLN02494 adenosylhomocysteinas 68.1 6.3 0.00014 42.1 4.2 30 90-120 255-284 (477)
210 PLN02545 3-hydroxybutyryl-CoA 67.4 7.2 0.00015 38.1 4.2 30 90-120 5-34 (295)
211 PRK06718 precorrin-2 dehydroge 67.3 71 0.0015 29.9 10.8 31 90-121 11-41 (202)
212 TIGR03451 mycoS_dep_FDH mycoth 66.6 30 0.00065 34.3 8.5 30 90-120 178-208 (358)
213 PRK15461 NADH-dependent gamma- 66.5 7.3 0.00016 38.3 4.1 39 90-132 2-40 (296)
214 PRK06988 putative formyltransf 66.3 7.9 0.00017 38.8 4.4 31 88-119 1-31 (312)
215 PF02737 3HCDH_N: 3-hydroxyacy 66.1 8.5 0.00018 35.3 4.2 29 91-120 1-29 (180)
216 PTZ00431 pyrroline carboxylate 66.0 8.5 0.00018 37.1 4.4 23 90-112 4-26 (260)
217 cd01487 E1_ThiF_like E1_ThiF_l 65.9 3.3 7.2E-05 37.8 1.5 22 91-112 1-22 (174)
218 TIGR01915 npdG NADPH-dependent 65.7 8.7 0.00019 36.0 4.3 30 90-120 1-31 (219)
219 TIGR00465 ilvC ketol-acid redu 65.6 7.9 0.00017 38.9 4.2 31 90-121 4-34 (314)
220 PRK10669 putative cation:proto 65.5 10 0.00023 40.6 5.4 38 88-129 416-453 (558)
221 PRK08644 thiamine biosynthesis 65.2 2.9 6.3E-05 39.5 1.0 24 89-112 28-51 (212)
222 PRK12475 thiamine/molybdopteri 64.9 3.4 7.4E-05 41.9 1.5 25 89-114 24-48 (338)
223 PLN02778 3,5-epimerase/4-reduc 64.9 17 0.00036 35.6 6.3 32 86-118 6-38 (298)
224 PRK06928 pyrroline-5-carboxyla 64.9 9 0.0002 37.3 4.4 32 90-121 2-36 (277)
225 PRK06129 3-hydroxyacyl-CoA deh 64.8 8.4 0.00018 38.0 4.2 30 90-120 3-32 (308)
226 TIGR03201 dearomat_had 6-hydro 64.5 42 0.0009 33.1 9.1 38 91-132 169-206 (349)
227 PRK07531 bifunctional 3-hydrox 64.5 8.5 0.00018 40.9 4.4 38 88-129 3-40 (495)
228 TIGR00936 ahcY adenosylhomocys 64.5 8 0.00017 40.5 4.1 30 90-120 196-225 (406)
229 PRK08818 prephenate dehydrogen 64.5 8.4 0.00018 39.8 4.2 31 89-119 4-35 (370)
230 PRK14618 NAD(P)H-dependent gly 64.4 8.8 0.00019 38.0 4.3 31 90-121 5-35 (328)
231 cd08301 alcohol_DH_plants Plan 64.3 18 0.00038 36.0 6.4 90 90-202 189-281 (369)
232 COG2085 Predicted dinucleotide 64.1 13 0.00028 35.8 5.1 92 90-211 2-93 (211)
233 PRK07201 short chain dehydroge 64.0 45 0.00097 35.8 9.8 32 90-121 1-34 (657)
234 PRK06444 prephenate dehydrogen 64.0 7.7 0.00017 36.6 3.6 23 90-112 1-24 (197)
235 TIGR01087 murD UDP-N-acetylmur 63.8 36 0.00077 34.9 8.7 85 91-203 1-87 (433)
236 PLN02514 cinnamyl-alcohol dehy 63.5 24 0.00053 35.1 7.3 93 91-209 183-275 (357)
237 PLN02740 Alcohol dehydrogenase 63.1 19 0.00041 36.2 6.4 29 91-120 201-230 (381)
238 cd08237 ribitol-5-phosphate_DH 62.7 25 0.00054 34.8 7.1 29 91-119 166-195 (341)
239 PLN02260 probable rhamnose bio 62.6 15 0.00032 40.1 6.0 47 85-133 376-424 (668)
240 PRK11908 NAD-dependent epimera 62.6 10 0.00023 37.3 4.4 32 90-121 2-34 (347)
241 PLN02427 UDP-apiose/xylose syn 62.5 10 0.00022 38.1 4.3 32 90-121 15-47 (386)
242 cd08294 leukotriene_B4_DH_like 62.4 40 0.00086 32.3 8.3 94 91-208 146-240 (329)
243 PRK09260 3-hydroxybutyryl-CoA 62.0 11 0.00023 36.8 4.3 39 91-133 3-41 (288)
244 PRK07680 late competence prote 61.7 11 0.00023 36.5 4.2 23 90-112 1-23 (273)
245 PRK06035 3-hydroxyacyl-CoA deh 61.4 11 0.00024 36.8 4.2 29 91-120 5-33 (291)
246 cd08269 Zn_ADH9 Alcohol dehydr 61.4 72 0.0016 30.1 9.8 90 91-203 132-223 (312)
247 cd05290 LDH_3 A subgroup of L- 61.3 9 0.00019 38.4 3.7 22 91-112 1-22 (307)
248 cd05213 NAD_bind_Glutamyl_tRNA 60.9 10 0.00023 37.6 4.1 31 90-120 179-209 (311)
249 PRK06130 3-hydroxybutyryl-CoA 60.9 13 0.00028 36.5 4.6 30 90-120 5-34 (311)
250 PRK14106 murD UDP-N-acetylmura 60.9 25 0.00055 36.1 7.0 88 90-203 6-93 (450)
251 COG0702 Predicted nucleoside-d 60.6 11 0.00024 35.0 4.0 31 90-121 1-32 (275)
252 PRK05865 hypothetical protein; 60.1 25 0.00053 40.4 7.3 31 90-121 1-32 (854)
253 PRK05808 3-hydroxybutyryl-CoA 60.0 12 0.00026 36.2 4.3 30 90-120 4-33 (282)
254 cd08245 CAD Cinnamyl alcohol d 59.8 45 0.00097 32.1 8.2 92 91-209 165-256 (330)
255 COG1064 AdhP Zn-dependent alco 59.7 57 0.0012 33.6 9.1 92 91-211 169-261 (339)
256 cd00757 ThiF_MoeB_HesA_family 59.6 3.4 7.3E-05 39.2 0.3 24 89-112 21-44 (228)
257 cd08277 liver_alcohol_DH_like 59.2 48 0.001 33.0 8.5 29 91-120 187-216 (365)
258 COG0743 Dxr 1-deoxy-D-xylulose 58.9 17 0.00036 37.9 5.2 43 90-133 2-46 (385)
259 PRK06249 2-dehydropantoate 2-r 58.9 14 0.0003 36.5 4.5 31 89-119 5-36 (313)
260 PRK08655 prephenate dehydrogen 58.8 12 0.00026 39.2 4.3 30 90-120 1-31 (437)
261 TIGR02717 AcCoA-syn-alpha acet 58.5 29 0.00062 36.5 7.0 81 90-208 8-94 (447)
262 PRK05690 molybdopterin biosynt 58.3 5.9 0.00013 38.2 1.8 99 89-193 32-137 (245)
263 cd08296 CAD_like Cinnamyl alco 58.1 36 0.00079 33.1 7.3 94 91-209 166-259 (333)
264 cd05293 LDH_1 A subgroup of L- 58.1 16 0.00035 36.6 4.9 30 90-119 4-34 (312)
265 PRK05476 S-adenosyl-L-homocyst 58.1 12 0.00026 39.4 4.1 30 90-120 213-242 (425)
266 PRK06545 prephenate dehydrogen 58.0 13 0.00027 37.8 4.2 29 91-119 2-31 (359)
267 PRK00141 murD UDP-N-acetylmura 57.8 61 0.0013 34.1 9.4 82 91-203 17-99 (473)
268 PRK04690 murD UDP-N-acetylmura 57.6 47 0.001 35.0 8.4 84 90-203 9-94 (468)
269 cd08235 iditol_2_DH_like L-idi 57.5 87 0.0019 30.3 9.8 96 91-208 168-264 (343)
270 PLN02166 dTDP-glucose 4,6-dehy 57.2 23 0.00049 37.0 6.0 32 89-121 120-152 (436)
271 COG0345 ProC Pyrroline-5-carbo 57.2 22 0.00047 35.3 5.5 41 90-133 2-45 (266)
272 cd08233 butanediol_DH_like (2R 57.1 75 0.0016 31.1 9.4 29 91-120 175-204 (351)
273 PF04321 RmlD_sub_bind: RmlD s 57.1 14 0.0003 36.1 4.1 31 90-121 1-32 (286)
274 cd08234 threonine_DH_like L-th 57.0 33 0.00072 33.0 6.7 90 91-204 162-252 (334)
275 PTZ00142 6-phosphogluconate de 56.9 12 0.00026 39.8 3.9 129 90-229 2-151 (470)
276 cd08255 2-desacetyl-2-hydroxye 56.8 73 0.0016 29.8 8.9 85 91-204 100-185 (277)
277 PRK07530 3-hydroxybutyryl-CoA 56.7 15 0.00033 35.7 4.4 38 90-131 5-42 (292)
278 PRK05678 succinyl-CoA syntheta 56.7 31 0.00067 34.5 6.6 89 90-212 9-100 (291)
279 cd08262 Zn_ADH8 Alcohol dehydr 55.7 86 0.0019 30.4 9.4 94 91-204 164-259 (341)
280 cd01486 Apg7 Apg7 is an E1-lik 55.6 3.3 7.2E-05 41.8 -0.4 22 91-112 1-22 (307)
281 PRK15057 UDP-glucose 6-dehydro 55.5 15 0.00032 38.1 4.2 40 90-134 1-40 (388)
282 cd08263 Zn_ADH10 Alcohol dehyd 55.3 94 0.002 30.8 9.8 95 91-208 190-286 (367)
283 TIGR02356 adenyl_thiF thiazole 55.2 4.7 0.0001 37.6 0.5 41 89-130 21-62 (202)
284 cd01065 NAD_bind_Shikimate_DH 55.0 19 0.00041 31.1 4.2 31 90-120 20-50 (155)
285 cd08236 sugar_DH NAD(P)-depend 55.0 44 0.00095 32.4 7.3 91 91-204 162-253 (343)
286 KOG0455 Homoserine dehydrogena 54.8 11 0.00025 37.6 3.1 34 89-122 3-44 (364)
287 PLN02178 cinnamyl-alcohol dehy 54.2 45 0.00098 33.7 7.5 29 91-120 181-209 (375)
288 COG1023 Gnd Predicted 6-phosph 54.2 12 0.00026 37.2 3.1 43 90-136 1-43 (300)
289 PRK10309 galactitol-1-phosphat 54.0 69 0.0015 31.4 8.5 28 91-119 163-191 (347)
290 KOG0024 Sorbitol dehydrogenase 53.8 22 0.00049 36.6 5.0 100 87-203 168-267 (354)
291 PRK09424 pntA NAD(P) transhydr 53.8 58 0.0013 35.2 8.4 36 90-129 166-201 (509)
292 TIGR02818 adh_III_F_hyde S-(hy 53.7 30 0.00065 34.6 6.0 39 91-133 188-227 (368)
293 cd01338 MDH_choloroplast_like 53.6 36 0.00079 34.3 6.6 24 89-112 2-26 (322)
294 cd08260 Zn_ADH6 Alcohol dehydr 53.6 37 0.0008 33.1 6.5 95 91-208 168-263 (345)
295 PLN00141 Tic62-NAD(P)-related 53.1 25 0.00054 33.0 5.0 30 90-120 18-48 (251)
296 cd05191 NAD_bind_amino_acid_DH 52.9 24 0.00052 28.1 4.2 23 90-112 24-46 (86)
297 PRK01710 murD UDP-N-acetylmura 52.5 34 0.00073 35.7 6.4 87 91-209 16-106 (458)
298 cd08300 alcohol_DH_class_III c 52.5 78 0.0017 31.5 8.7 28 91-119 189-217 (368)
299 PRK09496 trkA potassium transp 52.4 18 0.00039 37.1 4.2 37 89-129 231-267 (453)
300 cd08231 MDR_TM0436_like Hypoth 52.3 95 0.0021 30.5 9.2 29 91-120 180-209 (361)
301 cd08289 MDR_yhfp_like Yhfp put 52.3 54 0.0012 31.3 7.3 94 91-209 149-243 (326)
302 cd08254 hydroxyacyl_CoA_DH 6-h 52.2 31 0.00067 33.0 5.7 95 91-208 168-262 (338)
303 PLN03154 putative allyl alcoho 51.8 83 0.0018 31.3 8.8 29 91-120 161-190 (348)
304 TIGR02355 moeB molybdopterin s 51.8 6.2 0.00013 38.0 0.7 24 89-112 24-47 (240)
305 cd08278 benzyl_alcohol_DH Benz 51.7 36 0.00077 33.9 6.2 95 91-208 189-284 (365)
306 PRK02318 mannitol-1-phosphate 51.6 16 0.00035 37.4 3.7 31 90-120 1-31 (381)
307 PRK02472 murD UDP-N-acetylmura 51.3 61 0.0013 33.3 7.9 85 91-203 7-93 (447)
308 TIGR01035 hemA glutamyl-tRNA r 51.2 19 0.00041 37.4 4.2 32 90-121 181-212 (417)
309 KOG0022 Alcohol dehydrogenase, 51.0 19 0.0004 37.2 4.0 96 91-208 195-293 (375)
310 cd08270 MDR4 Medium chain dehy 50.9 1.5E+02 0.0034 27.8 10.1 87 91-209 135-222 (305)
311 PLN02695 GDP-D-mannose-3',5'-e 50.8 28 0.0006 35.2 5.3 31 89-120 21-52 (370)
312 TIGR02354 thiF_fam2 thiamine b 50.7 5.5 0.00012 37.4 0.2 30 89-119 21-51 (200)
313 TIGR00518 alaDH alanine dehydr 50.5 20 0.00044 36.7 4.2 30 90-120 168-197 (370)
314 cd08284 FDH_like_2 Glutathione 50.4 81 0.0018 30.5 8.3 91 91-204 170-261 (344)
315 PRK12921 2-dehydropantoate 2-r 50.4 21 0.00047 34.4 4.2 30 90-120 1-30 (305)
316 PRK02006 murD UDP-N-acetylmura 50.3 73 0.0016 33.6 8.5 29 91-121 9-37 (498)
317 TIGR00873 gnd 6-phosphoglucona 50.1 16 0.00035 38.8 3.6 39 91-133 1-39 (467)
318 PRK09987 dTDP-4-dehydrorhamnos 49.8 32 0.0007 33.4 5.4 29 90-120 1-30 (299)
319 PRK10675 UDP-galactose-4-epime 49.6 22 0.00048 34.5 4.2 31 90-121 1-32 (338)
320 PRK05708 2-dehydropantoate 2-r 49.3 23 0.00049 35.0 4.3 31 88-119 1-31 (305)
321 PRK00683 murD UDP-N-acetylmura 49.1 21 0.00046 36.7 4.2 30 90-120 4-33 (418)
322 PLN02827 Alcohol dehydrogenase 48.9 45 0.00097 33.7 6.4 28 91-119 196-224 (378)
323 TIGR02825 B4_12hDH leukotriene 48.8 1.1E+02 0.0023 29.6 8.9 95 91-208 141-236 (325)
324 PRK14806 bifunctional cyclohex 48.5 22 0.00048 39.2 4.5 33 88-120 2-35 (735)
325 KOG2380 Prephenate dehydrogena 48.5 16 0.00036 38.0 3.2 24 89-112 52-75 (480)
326 cd08292 ETR_like_2 2-enoyl thi 48.3 1.7E+02 0.0038 27.7 10.1 31 90-121 141-172 (324)
327 PRK15182 Vi polysaccharide bio 48.2 20 0.00044 37.5 3.9 37 90-131 7-43 (425)
328 cd01484 E1-2_like Ubiquitin ac 48.1 14 0.00031 35.6 2.6 100 91-196 1-109 (234)
329 cd08295 double_bond_reductase_ 47.8 1.1E+02 0.0023 29.9 8.7 29 91-120 154-183 (338)
330 PLN02702 L-idonate 5-dehydroge 47.7 44 0.00096 33.0 6.1 100 91-208 184-284 (364)
331 PRK00421 murC UDP-N-acetylmura 47.7 87 0.0019 32.6 8.5 87 91-210 9-96 (461)
332 cd05188 MDR Medium chain reduc 47.6 72 0.0016 29.0 7.1 29 91-120 137-165 (271)
333 TIGR00561 pntA NAD(P) transhyd 47.5 65 0.0014 34.9 7.6 151 90-252 165-338 (511)
334 PRK10083 putative oxidoreducta 47.4 74 0.0016 30.8 7.5 95 91-208 163-258 (339)
335 PRK07066 3-hydroxybutyryl-CoA 47.4 25 0.00053 35.6 4.3 35 91-129 9-43 (321)
336 cd05280 MDR_yhdh_yhfp Yhdh and 47.4 95 0.0021 29.5 8.1 88 91-203 149-237 (325)
337 PRK08219 short chain dehydroge 47.3 26 0.00056 31.6 4.0 30 90-121 4-34 (227)
338 PLN02896 cinnamyl-alcohol dehy 47.2 32 0.00069 34.0 5.0 31 90-121 11-42 (353)
339 PLN00106 malate dehydrogenase 47.0 27 0.00058 35.4 4.4 139 90-259 19-183 (323)
340 PRK07877 hypothetical protein; 46.8 7.2 0.00016 43.7 0.4 111 89-203 107-222 (722)
341 PLN00112 malate dehydrogenase 46.8 30 0.00065 36.8 4.9 23 89-111 100-123 (444)
342 PF01262 AlaDh_PNT_C: Alanine 46.8 31 0.00068 31.0 4.5 32 89-121 20-51 (168)
343 cd05288 PGDH Prostaglandin deh 46.7 97 0.0021 29.6 8.1 91 91-204 148-239 (329)
344 PF00670 AdoHcyase_NAD: S-aden 46.2 33 0.00072 31.7 4.5 32 91-126 25-56 (162)
345 PRK08293 3-hydroxybutyryl-CoA 46.0 28 0.0006 33.9 4.3 30 90-120 4-33 (287)
346 cd01336 MDH_cytoplasmic_cytoso 45.9 29 0.00062 35.0 4.5 31 89-119 2-39 (325)
347 PF01073 3Beta_HSD: 3-beta hyd 45.9 63 0.0014 31.6 6.8 20 94-113 2-22 (280)
348 PLN02206 UDP-glucuronate decar 45.9 24 0.00052 37.0 4.0 31 90-121 120-151 (442)
349 PRK03803 murD UDP-N-acetylmura 45.6 80 0.0017 32.6 7.8 85 91-203 8-93 (448)
350 PLN02240 UDP-glucose 4-epimera 45.4 30 0.00065 33.8 4.5 32 89-121 5-37 (352)
351 TIGR02819 fdhA_non_GSH formald 45.4 1.4E+02 0.0031 30.5 9.5 30 91-121 188-217 (393)
352 PRK09291 short chain dehydroge 45.4 30 0.00066 31.9 4.3 31 90-121 3-34 (257)
353 TIGR00507 aroE shikimate 5-deh 44.5 72 0.0016 30.8 6.9 30 91-121 119-148 (270)
354 cd08252 AL_MDR Arginate lyase 44.5 78 0.0017 30.3 7.1 96 91-209 152-248 (336)
355 cd05284 arabinose_DH_like D-ar 44.5 71 0.0015 30.8 6.9 96 91-208 170-265 (340)
356 PRK06046 alanine dehydrogenase 44.2 32 0.00069 34.5 4.5 38 90-129 130-167 (326)
357 PLN02350 phosphogluconate dehy 44.1 24 0.00053 37.8 3.8 129 90-229 7-157 (493)
358 PRK14573 bifunctional D-alanyl 44.0 1E+02 0.0022 34.9 8.8 82 91-203 6-88 (809)
359 PRK05866 short chain dehydroge 43.7 48 0.001 32.1 5.5 30 90-120 41-71 (293)
360 PRK03806 murD UDP-N-acetylmura 43.0 1.1E+02 0.0025 31.4 8.4 86 91-209 8-94 (438)
361 cd01339 LDH-like_MDH L-lactate 42.9 26 0.00057 34.4 3.6 28 92-119 1-28 (300)
362 cd08285 NADP_ADH NADP(H)-depen 42.8 1.5E+02 0.0033 28.9 9.0 28 91-119 169-197 (351)
363 PRK05600 thiamine biosynthesis 42.5 11 0.00024 38.8 0.9 111 89-204 41-158 (370)
364 PRK04308 murD UDP-N-acetylmura 42.3 1.6E+02 0.0036 30.3 9.5 87 90-203 6-92 (445)
365 cd05279 Zn_ADH1 Liver alcohol 41.9 58 0.0013 32.4 5.9 92 91-204 186-280 (365)
366 TIGR03466 HpnA hopanoid-associ 41.7 32 0.0007 32.8 4.0 30 91-121 2-32 (328)
367 cd08286 FDH_like_ADH2 formalde 41.5 1.6E+02 0.0035 28.5 8.9 30 91-120 169-198 (345)
368 PRK04663 murD UDP-N-acetylmura 41.4 1.5E+02 0.0032 30.7 9.1 83 91-203 9-93 (438)
369 cd08259 Zn_ADH5 Alcohol dehydr 41.3 1E+02 0.0022 29.3 7.3 29 91-120 165-194 (332)
370 PRK15181 Vi polysaccharide bio 41.2 34 0.00073 34.0 4.1 31 90-121 16-47 (348)
371 COG0451 WcaG Nucleoside-diphos 40.9 36 0.00078 32.2 4.1 30 91-121 2-32 (314)
372 cd08232 idonate-5-DH L-idonate 40.5 2.2E+02 0.0047 27.5 9.5 89 91-204 168-257 (339)
373 cd05292 LDH_2 A subgroup of L- 40.5 39 0.00084 33.6 4.4 23 90-112 1-23 (308)
374 TIGR01181 dTDP_gluc_dehyt dTDP 40.3 33 0.00071 32.5 3.7 30 91-120 1-32 (317)
375 cd08261 Zn_ADH7 Alcohol dehydr 40.0 2.4E+02 0.0051 27.3 9.8 92 91-205 162-254 (337)
376 PRK08017 oxidoreductase; Provi 39.6 42 0.00092 30.9 4.3 30 90-120 3-33 (256)
377 TIGR01214 rmlD dTDP-4-dehydror 39.6 36 0.00077 32.1 3.8 29 91-120 1-30 (287)
378 PRK07326 short chain dehydroge 39.6 42 0.00092 30.5 4.2 30 90-120 7-37 (237)
379 PRK06019 phosphoribosylaminoim 39.4 40 0.00086 34.2 4.4 30 90-120 3-32 (372)
380 PRK00045 hemA glutamyl-tRNA re 38.9 39 0.00084 35.2 4.3 31 90-121 183-214 (423)
381 cd08287 FDH_like_ADH3 formalde 38.9 1.5E+02 0.0032 28.8 8.1 97 91-209 171-268 (345)
382 PRK05597 molybdopterin biosynt 38.6 13 0.00029 37.8 0.8 24 89-112 28-51 (355)
383 PLN02353 probable UDP-glucose 38.5 40 0.00086 36.0 4.3 38 90-130 2-40 (473)
384 cd08258 Zn_ADH4 Alcohol dehydr 38.3 1E+02 0.0023 29.7 6.9 139 91-253 167-305 (306)
385 PRK10754 quinone oxidoreductas 37.8 2.2E+02 0.0048 27.3 9.1 30 91-121 143-173 (327)
386 PRK05586 biotin carboxylase; V 37.7 41 0.00089 35.0 4.3 32 88-120 1-32 (447)
387 cd00650 LDH_MDH_like NAD-depen 37.1 48 0.001 31.9 4.4 21 92-112 1-22 (263)
388 TIGR02279 PaaC-3OHAcCoADH 3-hy 37.0 41 0.0009 36.0 4.2 37 90-130 6-42 (503)
389 COG0677 WecC UDP-N-acetyl-D-ma 37.0 38 0.00083 35.8 3.8 31 88-119 8-38 (436)
390 cd08238 sorbose_phosphate_red 36.5 1.4E+02 0.0031 30.4 7.9 108 91-210 178-289 (410)
391 COG0373 HemA Glutamyl-tRNA red 36.5 39 0.00084 35.7 3.8 32 90-121 179-210 (414)
392 PF00107 ADH_zinc_N: Zinc-bind 36.5 12 0.00027 31.0 0.2 91 100-212 2-92 (130)
393 cd00300 LDH_like L-lactate deh 36.5 1.1E+02 0.0023 30.4 6.8 22 92-113 1-22 (300)
394 TIGR01381 E1_like_apg7 E1-like 36.4 10 0.00022 42.1 -0.5 23 90-112 339-361 (664)
395 PF00289 CPSase_L_chain: Carba 36.4 43 0.00093 28.6 3.5 33 88-121 1-33 (110)
396 PF00070 Pyr_redox: Pyridine n 36.3 64 0.0014 25.0 4.2 31 91-121 1-32 (80)
397 PRK07023 short chain dehydroge 36.3 48 0.001 30.5 4.1 29 90-119 2-31 (243)
398 cd08246 crotonyl_coA_red croto 36.2 1.9E+02 0.0041 29.0 8.6 39 91-133 196-235 (393)
399 PRK08268 3-hydroxy-acyl-CoA de 36.2 43 0.00094 35.9 4.2 38 90-131 8-45 (507)
400 cd05281 TDH Threonine dehydrog 36.2 2.7E+02 0.0059 27.0 9.6 28 91-119 166-194 (341)
401 PRK10084 dTDP-glucose 4,6 dehy 36.1 44 0.00096 32.7 4.0 31 90-120 1-32 (352)
402 PLN02858 fructose-bisphosphate 36.1 41 0.00089 40.6 4.4 32 88-120 323-354 (1378)
403 PLN00198 anthocyanidin reducta 35.8 46 0.001 32.5 4.1 29 90-119 10-39 (338)
404 PLN02214 cinnamoyl-CoA reducta 35.7 52 0.0011 32.7 4.5 30 90-120 11-41 (342)
405 TIGR01763 MalateDH_bact malate 35.5 51 0.0011 32.8 4.4 144 90-259 2-163 (305)
406 PF01370 Epimerase: NAD depend 35.5 51 0.0011 29.7 4.1 29 92-121 1-30 (236)
407 PRK08132 FAD-dependent oxidore 35.4 67 0.0015 34.1 5.5 50 67-119 3-52 (547)
408 cd08240 6_hydroxyhexanoate_dh_ 35.3 1E+02 0.0022 30.2 6.3 90 91-203 178-268 (350)
409 PRK05653 fabG 3-ketoacyl-(acyl 35.1 61 0.0013 29.3 4.5 31 90-121 6-37 (246)
410 cd01080 NAD_bind_m-THF_DH_Cycl 35.1 85 0.0018 28.8 5.4 31 90-121 45-76 (168)
411 PRK08125 bifunctional UDP-gluc 35.0 46 0.001 36.5 4.3 32 90-121 316-348 (660)
412 PLN00203 glutamyl-tRNA reducta 34.8 43 0.00093 36.2 3.9 32 90-121 267-298 (519)
413 PLN02583 cinnamoyl-CoA reducta 34.6 51 0.0011 31.9 4.1 29 91-120 8-37 (297)
414 KOG4039 Serine/threonine kinas 34.4 1.4E+02 0.0031 28.7 6.8 31 90-120 19-51 (238)
415 PRK10538 malonic semialdehyde 34.4 54 0.0012 30.4 4.1 30 90-120 1-31 (248)
416 PRK03815 murD UDP-N-acetylmura 34.2 49 0.0011 34.3 4.1 29 90-121 1-29 (401)
417 COG5322 Predicted dehydrogenas 34.1 1.2E+02 0.0027 30.8 6.7 61 178-241 230-291 (351)
418 PF07991 IlvN: Acetohydroxy ac 33.8 50 0.0011 30.7 3.6 30 91-121 6-35 (165)
419 PRK06719 precorrin-2 dehydroge 33.7 61 0.0013 29.2 4.2 30 90-120 14-43 (157)
420 PLN02662 cinnamyl-alcohol dehy 33.4 48 0.001 31.8 3.7 29 91-120 6-35 (322)
421 PRK12745 3-ketoacyl-(acyl-carr 33.1 62 0.0013 29.8 4.3 32 88-120 1-33 (256)
422 TIGR01751 crot-CoA-red crotony 33.0 2.4E+02 0.0053 28.4 8.9 28 91-119 192-220 (398)
423 PRK06153 hypothetical protein; 33.0 20 0.00044 37.5 1.1 30 90-119 177-206 (393)
424 PRK12826 3-ketoacyl-(acyl-carr 32.8 66 0.0014 29.3 4.4 31 90-121 7-38 (251)
425 cd08243 quinone_oxidoreductase 32.8 1.6E+02 0.0035 27.6 7.1 88 91-204 145-233 (320)
426 PRK02705 murD UDP-N-acetylmura 32.8 1.1E+02 0.0023 31.7 6.4 29 91-121 2-30 (459)
427 PRK10537 voltage-gated potassi 32.5 67 0.0015 33.5 4.8 30 91-121 242-271 (393)
428 TIGR01777 yfcH conserved hypot 32.3 47 0.001 31.1 3.3 28 93-121 2-30 (292)
429 TIGR01919 hisA-trpF 1-(5-phosp 32.1 1.6E+02 0.0034 28.6 7.0 86 181-268 75-174 (243)
430 PRK10217 dTDP-glucose 4,6-dehy 32.0 60 0.0013 31.8 4.2 29 90-119 2-31 (355)
431 cd08265 Zn_ADH3 Alcohol dehydr 31.8 3.2E+02 0.007 27.4 9.5 28 91-119 206-234 (384)
432 cd08293 PTGR2 Prostaglandin re 31.4 1E+02 0.0023 29.8 5.7 95 91-208 157-253 (345)
433 PRK06924 short chain dehydroge 31.0 69 0.0015 29.5 4.2 29 91-120 3-32 (251)
434 cd01337 MDH_glyoxysomal_mitoch 31.0 70 0.0015 32.2 4.5 23 90-112 1-24 (310)
435 PRK14192 bifunctional 5,10-met 31.0 1.6E+02 0.0034 29.4 6.9 23 90-112 160-183 (283)
436 PRK00258 aroE shikimate 5-dehy 31.0 67 0.0014 31.3 4.3 32 90-121 124-155 (278)
437 cd08250 Mgc45594_like Mgc45594 30.9 2.8E+02 0.0062 26.4 8.6 95 91-209 142-237 (329)
438 PRK12320 hypothetical protein; 30.6 60 0.0013 36.5 4.3 31 90-121 1-32 (699)
439 PRK06947 glucose-1-dehydrogena 30.3 72 0.0016 29.3 4.2 31 88-119 1-32 (248)
440 PRK14620 NAD(P)H-dependent gly 30.2 68 0.0015 31.6 4.2 27 90-117 1-27 (326)
441 cd05285 sorbitol_DH Sorbitol d 29.9 2.1E+02 0.0045 27.9 7.5 28 91-119 165-193 (343)
442 TIGR01179 galE UDP-glucose-4-e 29.9 64 0.0014 30.5 3.9 29 91-120 1-30 (328)
443 PRK08267 short chain dehydroge 29.8 77 0.0017 29.4 4.3 29 91-120 3-32 (260)
444 PRK07364 2-octaprenyl-6-methox 29.7 94 0.002 31.2 5.2 32 87-119 16-47 (415)
445 cd01485 E1-1_like Ubiquitin ac 29.3 30 0.00064 32.3 1.4 24 89-112 19-42 (198)
446 COG1086 Predicted nucleoside-d 29.3 1.2E+02 0.0025 33.6 6.0 114 91-221 252-387 (588)
447 PF00899 ThiF: ThiF family; I 29.1 65 0.0014 27.6 3.4 103 90-197 3-111 (135)
448 PRK08328 hypothetical protein; 29.1 34 0.00074 32.6 1.8 24 89-112 27-50 (231)
449 cd08279 Zn_ADH_class_III Class 28.8 1.2E+02 0.0025 30.1 5.7 95 91-208 185-281 (363)
450 PRK11150 rfaD ADP-L-glycero-D- 28.6 1E+02 0.0023 29.5 5.1 29 92-121 2-31 (308)
451 PF02558 ApbA: Ketopantoate re 28.5 84 0.0018 26.9 4.1 29 92-121 1-29 (151)
452 TIGR00514 accC acetyl-CoA carb 28.5 71 0.0015 33.2 4.2 31 89-120 2-32 (449)
453 PLN02986 cinnamyl-alcohol dehy 28.4 1.2E+02 0.0026 29.4 5.5 30 91-121 7-37 (322)
454 PRK07231 fabG 3-ketoacyl-(acyl 28.1 80 0.0017 28.8 4.1 29 91-120 7-36 (251)
455 cd08244 MDR_enoyl_red Possible 28.1 4.3E+02 0.0093 24.9 9.2 29 91-120 145-174 (324)
456 PRK05086 malate dehydrogenase; 28.0 79 0.0017 31.6 4.3 77 178-259 69-166 (312)
457 PRK15076 alpha-galactosidase; 27.9 68 0.0015 33.7 3.9 13 90-102 2-14 (431)
458 PLN02260 probable rhamnose bio 27.8 67 0.0015 35.1 4.1 32 90-121 7-40 (668)
459 TIGR01472 gmd GDP-mannose 4,6- 27.8 75 0.0016 31.2 4.1 30 91-121 2-32 (343)
460 PRK12827 short chain dehydroge 27.6 88 0.0019 28.4 4.2 30 90-120 7-37 (249)
461 TIGR01470 cysG_Nterm siroheme 27.6 4E+02 0.0087 25.0 8.7 28 91-119 11-38 (205)
462 cd05286 QOR2 Quinone oxidoredu 27.1 2.3E+02 0.0049 26.2 7.0 30 91-121 139-169 (320)
463 COG2084 MmsB 3-hydroxyisobutyr 26.8 77 0.0017 31.8 3.9 129 90-229 1-146 (286)
464 PRK05884 short chain dehydroge 26.8 86 0.0019 28.9 4.0 29 91-120 2-31 (223)
465 KOG1399 Flavin-containing mono 26.5 67 0.0014 34.2 3.6 30 87-117 4-33 (448)
466 TIGR01142 purT phosphoribosylg 26.3 79 0.0017 31.6 3.9 29 91-120 1-29 (380)
467 PF06115 DUF956: Domain of unk 26.0 57 0.0012 28.8 2.5 32 152-185 25-59 (118)
468 PRK05565 fabG 3-ketoacyl-(acyl 25.8 98 0.0021 28.1 4.2 29 90-119 6-35 (247)
469 TIGR01161 purK phosphoribosyla 25.7 84 0.0018 31.4 4.0 29 91-120 1-29 (352)
470 TIGR00692 tdh L-threonine 3-de 25.7 4E+02 0.0086 25.9 8.7 28 91-119 164-192 (340)
471 PRK05396 tdh L-threonine 3-deh 25.6 5.4E+02 0.012 24.9 9.6 91 91-203 166-257 (341)
472 cd08299 alcohol_DH_class_I_II_ 25.5 3.2E+02 0.007 27.3 8.2 28 91-119 193-221 (373)
473 PTZ00354 alcohol dehydrogenase 25.5 1.4E+02 0.003 28.5 5.3 38 91-132 143-181 (334)
474 PRK07577 short chain dehydroge 25.3 97 0.0021 28.1 4.1 29 91-120 5-34 (234)
475 PRK07178 pyruvate carboxylase 25.3 90 0.0019 32.9 4.3 31 90-121 3-33 (472)
476 PLN02650 dihydroflavonol-4-red 25.2 84 0.0018 30.9 3.9 28 91-119 7-35 (351)
477 cd01492 Aos1_SUMO Ubiquitin ac 25.1 52 0.0011 30.7 2.2 26 89-115 21-46 (197)
478 cd08248 RTN4I1 Human Reticulon 25.0 3.7E+02 0.008 25.9 8.3 31 90-121 164-195 (350)
479 cd08256 Zn_ADH2 Alcohol dehydr 24.8 4E+02 0.0086 26.0 8.5 29 91-120 177-206 (350)
480 PRK12825 fabG 3-ketoacyl-(acyl 24.8 1.2E+02 0.0025 27.4 4.5 28 90-118 7-35 (249)
481 cd05278 FDH_like Formaldehyde 24.7 3.3E+02 0.0072 26.2 7.9 29 91-119 170-198 (347)
482 cd08249 enoyl_reductase_like e 24.7 4.3E+02 0.0094 25.7 8.8 95 91-209 157-254 (339)
483 PRK00005 fmt methionyl-tRNA fo 24.6 97 0.0021 30.9 4.2 30 90-120 1-30 (309)
484 PRK12439 NAD(P)H-dependent gly 24.6 78 0.0017 31.8 3.6 23 90-112 8-30 (341)
485 PRK14851 hypothetical protein; 24.4 23 0.0005 39.6 -0.3 98 90-190 44-145 (679)
486 PTZ00325 malate dehydrogenase; 24.4 1.1E+02 0.0023 31.1 4.5 141 87-259 7-173 (321)
487 PRK07578 short chain dehydroge 24.3 1.7E+02 0.0036 26.1 5.3 28 91-120 2-30 (199)
488 TIGR03570 NeuD_NnaD sugar O-ac 24.2 1.1E+02 0.0024 27.0 4.1 30 91-121 1-30 (201)
489 PRK08177 short chain dehydroge 23.9 1.1E+02 0.0024 27.8 4.2 30 91-121 3-33 (225)
490 PRK07074 short chain dehydroge 23.9 1.1E+02 0.0024 28.3 4.2 29 91-120 4-33 (257)
491 PRK12464 1-deoxy-D-xylulose 5- 23.9 95 0.0021 32.6 4.0 105 94-208 1-115 (383)
492 PRK07411 hypothetical protein; 23.9 29 0.00063 35.9 0.4 24 89-112 38-61 (390)
493 cd01078 NAD_bind_H4MPT_DH NADP 23.9 1.1E+02 0.0024 27.7 4.2 31 90-121 29-60 (194)
494 PRK00994 F420-dependent methyl 23.8 93 0.002 30.9 3.7 43 88-130 1-49 (277)
495 PRK02083 imidazole glycerol ph 23.8 96 0.0021 29.7 3.9 32 180-211 74-105 (253)
496 PRK07024 short chain dehydroge 23.2 1.2E+02 0.0026 28.2 4.4 31 89-120 2-33 (257)
497 PRK05993 short chain dehydroge 23.2 1.1E+02 0.0025 28.9 4.2 30 90-120 5-35 (277)
498 PRK07523 gluconate 5-dehydroge 23.2 1.1E+02 0.0024 28.2 4.1 30 90-120 11-41 (255)
499 PRK06111 acetyl-CoA carboxylas 23.1 1.1E+02 0.0023 31.6 4.3 32 88-120 1-32 (450)
500 TIGR01772 MDH_euk_gproteo mala 23.1 1.2E+02 0.0026 30.5 4.6 22 91-112 1-23 (312)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-115 Score=868.63 Aligned_cols=299 Identities=57% Similarity=0.946 Sum_probs=286.3
Q ss_pred cceeEEEeccChhHHHHHHHHHcC----CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEE--------ecCCeeE
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFR----DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINV--------VDDSTLE 155 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r----~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~--------~~~~~L~ 155 (389)
|++||||||||||||+++|+++++ ++++||||||++.++++|+|||||||+||+|+++++. ++ +.|.
T Consensus 2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~-~~l~ 80 (361)
T PTZ00434 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTD-DVLV 80 (361)
T ss_pred CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccC-CEEE
Confidence 678999999999999999999875 5799999999878999999999999999999999997 54 6899
Q ss_pred ECCEEEEEE-ecCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC-CCeEEeecCccCCCC-CCC
Q 016451 156 INGKLIKVF-SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKP-NMN 232 (389)
Q Consensus 156 inGk~I~v~-~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D-~pt~V~GVN~~~y~~-~~~ 232 (389)
+||++|.++ +++||+++||+++|+||||||||.|++++++++||++||||||||||++| .|||||||||+.|++ .++
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~~ 160 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHH 160 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccCc
Confidence 999999986 99999999999999999999999999999999999999999999999887 689999999999998 588
Q ss_pred eEecCChhhhhhHHHHHHH-HhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC---------
Q 016451 233 IVSNASCTTNCLAPLAKVV-HEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK--------- 302 (389)
Q Consensus 233 IISnaSCTTncLAPvlkvL-~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak--------- 302 (389)
||||||||||||||++|+| ||+|||++|+|||||+||++|+++|+||+|||||+|+|++||||++|||||
T Consensus 161 IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L 240 (361)
T PTZ00434 161 VVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPST 240 (361)
T ss_pred EEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceecccc
Confidence 9999999999999999999 799999999999999999999999999659999999999999999999999
Q ss_pred ---------------------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCccccc
Q 016451 303 ---------------------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLS 355 (389)
Q Consensus 303 ---------------------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~ 355 (389)
++++||||++||+|++++|||||+|+|+|+||+||+|++||+|||+.+|++++
T Consensus 241 ~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v~~ 320 (361)
T PTZ00434 241 KGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDNRSSIYDSKATLQNN 320 (361)
T ss_pred CCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCcccccCCCccccccCCCCCCeEEEhhhCeEec
Confidence 89999999999999999999999999999999999999999999999999996
Q ss_pred ----CCeEEEEEEeCCCCchhhhHHHHHHHHHHhhh
Q 016451 356 ----ASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 387 (389)
Q Consensus 356 ----~~~vKl~~WYDNE~GYs~R~vdl~~~~~~~~~ 387 (389)
++|+|+++||||||||||||+||+.||.+..+
T Consensus 321 ~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~~~ 356 (361)
T PTZ00434 321 LPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKDA 356 (361)
T ss_pred cCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhccc
Confidence 48999999999999999999999999987654
No 2
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=6.9e-109 Score=836.71 Aligned_cols=380 Identities=85% Similarity=1.240 Sum_probs=338.8
Q ss_pred Chhhhhhhhhhhccccc---ccccCCCCCCccCCcccccccccccc-ceecccCCCCCCCCcccccccccccCccccccc
Q 016451 1 MAFSSLLRSTASASLVR---ADLTSSPSDRVKGSPTAAFSRNLNTS-SIFGTSVPSGSSSSSLQTCAAKGIQPIRATATE 76 (389)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (389)
++++..||+++.+++.. +...++...+.+. +++.+... ++.+.+ ...+.+...+....+++++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 72 (421)
T PLN02272 1 MAFSSLLRSAATAPAAAARGSDFSSSSSDPSKV-----SSVGFSSSLSFSGSS---SGASSSLQSCSARSVQPIKATATE 72 (421)
T ss_pred CccccccccccccchhccccCCCCCCCCccccc-----ccccceeeeeccccc---cccccccccccccccchhhhhhcc
Confidence 57888999988865443 3444445555555 55555532 233332 144566777778888888888888
Q ss_pred CCccccCCCCCcceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEE
Q 016451 77 IPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEI 156 (389)
Q Consensus 77 ~~~~~~~~~~~m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~i 156 (389)
.+...++.....++||||||||||||+++|++.++++++|||||||+.++++|+|||||||+||+|+++++..+++.|.+
T Consensus 73 ~~~~~~~~~~~~~~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~ 152 (421)
T PLN02272 73 APPAVLKSSSSGKTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEI 152 (421)
T ss_pred ccccccccccccceEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEE
Confidence 88777665444238999999999999999999987779999999998999999999999999999999999723468999
Q ss_pred CCEEEEEEecCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCCCCeEEeecCccCCCCCCCeEec
Q 016451 157 NGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSN 236 (389)
Q Consensus 157 nGk~I~v~~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D~pt~V~GVN~~~y~~~~~IISn 236 (389)
||++|+++++++|+++||+++|+||||||||.|++++++++|+++|||||||++|++|+|+|||||||+.|++.++||||
T Consensus 153 ~G~~I~V~~~~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISn 232 (421)
T PLN02272 153 NGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSN 232 (421)
T ss_pred CCEEEEEEecCCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeC
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999887789999
Q ss_pred CChhhhhhHHHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC--------------
Q 016451 237 ASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK-------------- 302 (389)
Q Consensus 237 aSCTTncLAPvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak-------------- 302 (389)
||||||||+|++|+|||+|||++++|||||+||++|+++|+++.+||||+|++++||||++||++|
T Consensus 233 aSCTTn~Lap~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~ 312 (421)
T PLN02272 233 ASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLT 312 (421)
T ss_pred CCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEE
Confidence 999999999999999999999999999999999999999998658999999999999999999988
Q ss_pred ----------------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEE
Q 016451 303 ----------------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMK 360 (389)
Q Consensus 303 ----------------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vK 360 (389)
++++||||++|+++++|+|||||+|+|||+||+||+|++||+|||+.+|++++++++|
T Consensus 313 gtaVRVPv~~gs~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~ssi~D~~~t~~~~~~~vK 392 (421)
T PLN02272 313 GMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMK 392 (421)
T ss_pred EEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCCcEEEEcccCeEecCCEEE
Confidence 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCchhhhHHHHHHHHHHhhhc
Q 016451 361 LVSWYDNEWGYSNRVLDLIEHMALVAAH 388 (389)
Q Consensus 361 l~~WYDNE~GYs~R~vdl~~~~~~~~~~ 388 (389)
|++||||||||||||+||+.||....++
T Consensus 393 v~~WYDNEwGys~R~~dl~~~~~~~~~~ 420 (421)
T PLN02272 393 LVSWYDNEWGYSNRVLDLIEHMALVAAS 420 (421)
T ss_pred EEEEecCchhHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999887765
No 3
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=8.9e-109 Score=837.88 Aligned_cols=300 Identities=50% Similarity=0.796 Sum_probs=286.7
Q ss_pred CCCcceeEEEeccChhHHHHHHHHHcC--CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEE
Q 016451 85 RSDGNTKVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK 162 (389)
Q Consensus 85 ~~~m~ikVgINGfGrIGr~vlR~l~~r--~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~ 162 (389)
...|++||||||||||||+++|+++++ ++++||||||+ .++++|+|||||||+||+|+++++..+++.|.+||+.|+
T Consensus 71 ~~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~ 149 (442)
T PLN02237 71 ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIK 149 (442)
T ss_pred cccceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEE
Confidence 335889999999999999999998876 67999999995 799999999999999999999998733468999999999
Q ss_pred EEecCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC--CCeEEeecCccCCCCC-CCeEecCCh
Q 016451 163 VFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKPN-MNIVSNASC 239 (389)
Q Consensus 163 v~~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D--~pt~V~GVN~~~y~~~-~~IISnaSC 239 (389)
++++++|.++||+++|+||||||||.|++++++++|+++|||||+||+|.+| +|||||||||+.|++. ++|||||||
T Consensus 150 V~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSC 229 (442)
T PLN02237 150 VVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASC 229 (442)
T ss_pred EEEcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCch
Confidence 9999999999999999999999999999999999999999999999999765 7999999999999976 789999999
Q ss_pred hhhhhHHHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC-----------------
Q 016451 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK----------------- 302 (389)
Q Consensus 240 TTncLAPvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak----------------- 302 (389)
|||||||++|+|||+|||++++|||||+||+||+++|+|| +||||+|+|++||||++|||||
T Consensus 230 TTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h-~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A 308 (442)
T PLN02237 230 TTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIA 308 (442)
T ss_pred HHHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC-cccccccccccccccCCcchhhhhceecccCCCceeeEE
Confidence 9999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred --------------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEE
Q 016451 303 --------------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLV 362 (389)
Q Consensus 303 --------------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~ 362 (389)
++++||||++||+|++|+|||||+|+|+|+||+||+|++||+|||+.+|++++++|+||+
T Consensus 309 ~RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~ 388 (442)
T PLN02237 309 LRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVV 388 (442)
T ss_pred EecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCEEEEE
Confidence 499999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCchhhhHHHHHHHHHHhh
Q 016451 363 SWYDNEWGYSNRVLDLIEHMALVA 386 (389)
Q Consensus 363 ~WYDNE~GYs~R~vdl~~~~~~~~ 386 (389)
+||||||||||||+||+.||+++.
T Consensus 389 aWYDNEwGys~R~~dl~~~~~~~~ 412 (442)
T PLN02237 389 AWYDNEWGYSQRVVDLAHLVAAKW 412 (442)
T ss_pred EEeCCchhHHHHHHHHHHHHHHhh
Confidence 999999999999999999998753
No 4
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-107 Score=807.72 Aligned_cols=297 Identities=64% Similarity=1.041 Sum_probs=286.9
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
|++||||||||||||+++|+++++++++||||||++.++++|+|||||||+||+|++++++++ +.|.+||++|++++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~-~~l~i~g~~i~~~~~~ 79 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTD-GFLMIGSKKVHVFFEK 79 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecC-CEEEECCeEEEEEeCC
Confidence 668999999999999999999988889999999988999999999999999999999999975 5899999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC-CCeEEeecCccCCCCCCCeEecCChhhhhhHH
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 246 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D-~pt~V~GVN~~~y~~~~~IISnaSCTTncLAP 246 (389)
||+++||++.|+||||||||.|+++++++.|+++|||||++|+|.++ +|+|||||||+.|++.++||||||||||||+|
T Consensus 80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~Lap 159 (337)
T PTZ00023 80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAP 159 (337)
T ss_pred ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999765 79999999999998877899999999999999
Q ss_pred HHHHHHhhcCceEEeeecccccCCCcccccCCC--CCCCCCCcccccccccCCCCCCC----------------------
Q 016451 247 LAKVVHEEFGILEGLMTTVHATTATQKTVDGPS--MKDWRGGRGASQNIIPSSTGAAK---------------------- 302 (389)
Q Consensus 247 vlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~--~kd~R~~Raaa~NIIPtsTGaak---------------------- 302 (389)
++|+|||+|||++++|||||+||++|.++||++ .+||||+|++|+||||++||++|
T Consensus 160 ~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVPt 239 (337)
T PTZ00023 160 LAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPV 239 (337)
T ss_pred HHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEecc
Confidence 999999999999999999999999999999985 38999999999999999999988
Q ss_pred --------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEEEEeCCC
Q 016451 303 --------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNE 368 (389)
Q Consensus 303 --------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~~WYDNE 368 (389)
++++||||++|+++++|+|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++|||||
T Consensus 240 ~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~v~~~~~~k~~~WyDNE 319 (337)
T PTZ00023 240 PDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVKAGIALNDTFVKLVSWYDNE 319 (337)
T ss_pred cCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCCCeEEEcccCeEecCCEEEEEEEecCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHh
Q 016451 369 WGYSNRVLDLIEHMALV 385 (389)
Q Consensus 369 ~GYs~R~vdl~~~~~~~ 385 (389)
|||||||+||+.||+++
T Consensus 320 ~gys~r~~d~~~~~~~~ 336 (337)
T PTZ00023 320 WGYSNRLLDLAHYITQK 336 (337)
T ss_pred hhHHHHHHHHHHHHhhc
Confidence 99999999999999764
No 5
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=4.9e-107 Score=804.68 Aligned_cols=293 Identities=66% Similarity=1.063 Sum_probs=283.6
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
|++||||||||||||+++|+++++++++||||||+ .++++|+|||||||+||+|+++++.++ +.|.+||++|.+++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~~~v~~~~-~~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFDGTVEVKD-GHLIVNGKKIRVTAER 78 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcCCcEEecC-CEEEECCeEEEEEEcC
Confidence 56899999999999999999998888999999995 899999999999999999999999975 5899999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC-CCeEEeecCccCCCCCCCeEecCChhhhhhHH
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 246 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D-~pt~V~GVN~~~y~~~~~IISnaSCTTncLAP 246 (389)
+|+++||+++|+||||||||.|+++++|++|+++|||||++|+|++| +|+|||||||+.|++ ++||||||||||||+|
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lap 157 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAP 157 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999875 799999999999976 7899999999999999
Q ss_pred HHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC------------------------
Q 016451 247 LAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK------------------------ 302 (389)
Q Consensus 247 vlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak------------------------ 302 (389)
++|+|||+|||++++|||||+||++|+++|+++.+||||+|++++||||++||+++
T Consensus 158 vlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~ 237 (331)
T PRK15425 158 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN 237 (331)
T ss_pred HHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccC
Confidence 99999999999999999999999999999998668999999999999999999988
Q ss_pred ------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEEEEeCCCCc
Q 016451 303 ------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWG 370 (389)
Q Consensus 303 ------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~~WYDNE~G 370 (389)
++++||||++|++|++|+|||||+|+|+|+||+||+|++||||||+.+|++++++++|+++|||||||
T Consensus 238 gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ssi~d~~~t~v~~~~~~k~~~WyDNE~g 317 (331)
T PRK15425 238 VSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETG 317 (331)
T ss_pred eEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCcceEEEcccCEEecCCEEEEEEEecCchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHH
Q 016451 371 YSNRVLDLIEHMA 383 (389)
Q Consensus 371 Ys~R~vdl~~~~~ 383 (389)
|||||+||+.||+
T Consensus 318 ys~r~~d~~~~~~ 330 (331)
T PRK15425 318 YSNKVLDLIAHIS 330 (331)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999985
No 6
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-106 Score=803.11 Aligned_cols=293 Identities=48% Similarity=0.811 Sum_probs=282.9
Q ss_pred eeEEEeccChhHHHHHHHHHcC--CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r--~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
+||||||||||||+++|+++++ ++++||||||+ .++++|+|||||||+||+|+++++.++ +.|.+||++|++++++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~~~v~~~~-~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLNADISADE-NSITVNGKTIKCVSDR 79 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCCCcEEEcC-CEEEECCEEEEEEEcC
Confidence 6999999999999999998877 57999999996 799999999999999999999999975 5899999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC--CCeEEeecCccCCCC-CCCeEecCChhhhhh
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKP-NMNIVSNASCTTNCL 244 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D--~pt~V~GVN~~~y~~-~~~IISnaSCTTncL 244 (389)
||+++||+++|+||||||||.|++++++++|+++|||||++|+|.+| +|||||||||+.|++ .++||||||||||||
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~L 159 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCL 159 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHH
Confidence 99999999999999999999999999999999999999999999765 599999999999986 478999999999999
Q ss_pred HHHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC----------------------
Q 016451 245 APLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK---------------------- 302 (389)
Q Consensus 245 APvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak---------------------- 302 (389)
+|++|+||++|||++++|||||+||++|+++|++| +||||+|+|++||||++|||||
T Consensus 160 ap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVPt 238 (337)
T PRK07403 160 APIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPT 238 (337)
T ss_pred HHHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-cccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEecc
Confidence 99999999999999999999999999999999999 8999999999999999999999
Q ss_pred --------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEEEEeCCC
Q 016451 303 --------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNE 368 (389)
Q Consensus 303 --------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~~WYDNE 368 (389)
++++||||++||+|++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++|||||
T Consensus 239 ~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~k~~~WyDNE 318 (337)
T PRK07403 239 PNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMGGDMVKVIAWYDNE 318 (337)
T ss_pred CCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCCCEEEEcccCEEecCCEEEEEEEecCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHh
Q 016451 369 WGYSNRVLDLIEHMALV 385 (389)
Q Consensus 369 ~GYs~R~vdl~~~~~~~ 385 (389)
|||||||+||++||.++
T Consensus 319 ~Gys~r~~dl~~~~~~~ 335 (337)
T PRK07403 319 WGYSQRVVDLAELVARK 335 (337)
T ss_pred hhHHHHHHHHHHHHHhh
Confidence 99999999999999764
No 7
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.8e-106 Score=801.86 Aligned_cols=298 Identities=47% Similarity=0.796 Sum_probs=287.4
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
|++||||||||||||+++|+++++++|+||||||+ .++++|+|||||||+||+|++++++++ +.|.|||++|++++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~~~v~~~~-~~l~v~g~~I~v~~~~ 78 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFDGTVEAFE-DHLLVDGKKIRLLNNR 78 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCCCcEEecC-CEEEECCEEEEEEEcC
Confidence 67899999999999999999998888999999996 799999999999999999999999975 6999999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC-CCeEEeecCccCCCC-CCCeEecCChhhhhhH
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKP-NMNIVSNASCTTNCLA 245 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D-~pt~V~GVN~~~y~~-~~~IISnaSCTTncLA 245 (389)
+|+++||++.|+||||||||.|+++++++.|+++|||||++|+|.+| +++||+||||+.|++ .++||||||||||||+
T Consensus 79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~La 158 (343)
T PRK07729 79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLA 158 (343)
T ss_pred ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHH
Confidence 99999999999999999999999999999999999999999999776 667899999999987 4789999999999999
Q ss_pred HHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC-----------------------
Q 016451 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK----------------------- 302 (389)
Q Consensus 246 PvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak----------------------- 302 (389)
|++|+|||+|||++++|||||+||++|+++|+|+ +||||+|++++||||++|||||
T Consensus 159 p~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~ 237 (343)
T PRK07729 159 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP 237 (343)
T ss_pred HHHHHHHHhcCeeEEEEEEEecccCcccccccch-hhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeeec
Confidence 9999999999999999999999999999999998 8999999999999999999998
Q ss_pred -------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEEEEeCCCC
Q 016451 303 -------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEW 369 (389)
Q Consensus 303 -------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~~WYDNE~ 369 (389)
++++||||++||+|++|+|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||
T Consensus 238 ~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDNE~ 317 (343)
T PRK07729 238 NVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEW 317 (343)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCcceEEEcccCeEecCCEEEEEEEecCch
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHhhhc
Q 016451 370 GYSNRVLDLIEHMALVAAH 388 (389)
Q Consensus 370 GYs~R~vdl~~~~~~~~~~ 388 (389)
||||||+||+.||.++.++
T Consensus 318 Gys~r~~dl~~~~~~~~~~ 336 (343)
T PRK07729 318 GYSCRVVDLVTLVADELAK 336 (343)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 9999999999999987654
No 8
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=2.5e-104 Score=799.26 Aligned_cols=299 Identities=47% Similarity=0.775 Sum_probs=286.9
Q ss_pred CCCcceeEEEeccChhHHHHHHHHHcC--CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEE
Q 016451 85 RSDGNTKVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK 162 (389)
Q Consensus 85 ~~~m~ikVgINGfGrIGr~vlR~l~~r--~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~ 162 (389)
...|++||||||||||||.++|+|+++ +.++||||||+ .++++++|||+|||+||+|+++++..+++.|.+||++|+
T Consensus 56 ~~~~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~-~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~ 134 (395)
T PLN03096 56 VTEAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT-GGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIK 134 (395)
T ss_pred ccccccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC-CCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEE
Confidence 345889999999999999999999988 57999999996 799999999999999999999998644468999999999
Q ss_pred EEecCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC-CCeEEeecCccCCCCCCCeEecCChhh
Q 016451 163 VFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTT 241 (389)
Q Consensus 163 v~~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D-~pt~V~GVN~~~y~~~~~IISnaSCTT 241 (389)
+++++||+++||+++|+||||||||.|++++++++|+++|||||+||+|.++ +|||||||||+.|++.++|||||||||
T Consensus 135 v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTT 214 (395)
T PLN03096 135 VVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTT 214 (395)
T ss_pred EEEcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHH
Confidence 9999999999999999999999999999999999999999999999999765 899999999999988788999999999
Q ss_pred hhhHHHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC-------------------
Q 016451 242 NCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK------------------- 302 (389)
Q Consensus 242 ncLAPvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak------------------- 302 (389)
|||||++|+|||+|||++++|||||+||++|+++|++| +||||+|++|+||||++||++|
T Consensus 215 n~LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avR 293 (395)
T PLN03096 215 NCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALR 293 (395)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEccccccccccCCC-CccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEE
Confidence 99999999999999999999999999999999999998 8999999999999999999998
Q ss_pred -----------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEEEEe
Q 016451 303 -----------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWY 365 (389)
Q Consensus 303 -----------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~~WY 365 (389)
++++||||++|++|++|+|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++||
T Consensus 294 VPv~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WY 373 (395)
T PLN03096 294 VPTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWY 373 (395)
T ss_pred ccccceEEEEEEEEECCCCCHHHHHHHHHhhhhccccceEEEeCCCEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhHHHHHHHHHHh
Q 016451 366 DNEWGYSNRVLDLIEHMALV 385 (389)
Q Consensus 366 DNE~GYs~R~vdl~~~~~~~ 385 (389)
||||||||||+||++||..+
T Consensus 374 DNE~Gys~r~~dl~~~~~~~ 393 (395)
T PLN03096 374 DNEWGYSQRVVDLADIVANK 393 (395)
T ss_pred cCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999764
No 9
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-103 Score=780.96 Aligned_cols=297 Identities=33% Similarity=0.552 Sum_probs=283.3
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccC-ceEEEecCCeeEECC-EEEEEEe
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEING-KLIKVFS 165 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~-~~v~~~~~~~L~inG-k~I~v~~ 165 (389)
|++||||||||||||+++|+++++++++||||||+..++++|+|||||||+||+|+ ++++.++ +.|.+|| ++|++++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~-~~l~i~g~~~i~~~~ 79 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVG-EQIVLNGTQKIRVSA 79 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcC-CEEecCCCeEEEEEe
Confidence 66899999999999999999998888999999998789999999999999999996 6899875 6899999 8999999
Q ss_pred cCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCCCCeEEeecCccCCCCCCCeEecCChhhhhhH
Q 016451 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLA 245 (389)
Q Consensus 166 ~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D~pt~V~GVN~~~y~~~~~IISnaSCTTncLA 245 (389)
+++|+++||+++|+||||||||.|++.+++.+|+++|||||||++|++|+|||||||||+.|++.++||||||||||||+
T Consensus 80 ~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~La 159 (342)
T PTZ00353 80 KHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALA 159 (342)
T ss_pred cCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987789999999999999
Q ss_pred HHHHHHHhhcCceEEeeecccccCCCcccccCCC--CCCCCCCcccccccccCCCCCCC---------------------
Q 016451 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPS--MKDWRGGRGASQNIIPSSTGAAK--------------------- 302 (389)
Q Consensus 246 PvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~--~kd~R~~Raaa~NIIPtsTGaak--------------------- 302 (389)
|++|+|||+|||++++|||||+|+ +|...|+|+ ++||||+|+|++||||++|||++
T Consensus 160 pvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVP 238 (342)
T PTZ00353 160 PVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVP 238 (342)
T ss_pred HHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEcc
Confidence 999999999999999999999997 788888865 38999999999999999999998
Q ss_pred ---------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccc-cCCeEEEEEEeC
Q 016451 303 ---------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGL-SASFMKLVSWYD 366 (389)
Q Consensus 303 ---------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~-~~~~vKl~~WYD 366 (389)
++++||||++|++|++++|||||+|+|+|+||+||+|++ |||||+.+|+++ +++|+|+++|||
T Consensus 239 t~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~-~si~D~~~t~~~~~~~~vKv~~WYD 317 (342)
T PTZ00353 239 VKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNG-KLCYDATSSSSSREGEVHKMVLWFD 317 (342)
T ss_pred ccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCC-CeEEEcccCeEEeCCCEEEEEEEec
Confidence 899999999999999999999999999999999999999 599999999995 889999999999
Q ss_pred CCCchhhhHHHHHHHHHHhhh
Q 016451 367 NEWGYSNRVLDLIEHMALVAA 387 (389)
Q Consensus 367 NE~GYs~R~vdl~~~~~~~~~ 387 (389)
|||||||||+||++||.+..+
T Consensus 318 NE~Gys~r~~dl~~~~~~~~~ 338 (342)
T PTZ00353 318 VECYYAARLLSLVKQLHQIHA 338 (342)
T ss_pred CchHHHHHHHHHHHHHHhccC
Confidence 999999999999999987554
No 10
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=9.4e-103 Score=776.77 Aligned_cols=296 Identities=72% Similarity=1.158 Sum_probs=286.1
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCc-eEEEecCCeeEECCEEEEEEecC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~-~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
++||||||||||||..+|.+.++++++||||||+..++++|+|||||||+||+|++ +++.++++.|.++|++|.+++++
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~~ 84 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGIR 84 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEcC
Confidence 57999999999999999999988899999999988999999999999999999996 99985556799999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCCCCeEEeecCccCCCCCCCeEecCChhhhhhHHH
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPL 247 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D~pt~V~GVN~~~y~~~~~IISnaSCTTncLAPv 247 (389)
||+++||++.|+||||||||.|+++++++.|+++|||||+||+|++|+|+||||||++.|++.++||||||||||||+|+
T Consensus 85 ~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap~ 164 (338)
T PLN02358 85 NPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPL 164 (338)
T ss_pred CcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999998789999999999999999
Q ss_pred HHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC-------------------------
Q 016451 248 AKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK------------------------- 302 (389)
Q Consensus 248 lkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak------------------------- 302 (389)
+|+||++|||++++|||||+||++|+++|+++++||||+|++++||||++||++|
T Consensus 165 lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~g 244 (338)
T PLN02358 165 AKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDV 244 (338)
T ss_pred HHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcCe
Confidence 9999999999999999999999999999998669999999999999999999988
Q ss_pred -----------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEEEEeCCCCch
Q 016451 303 -----------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGY 371 (389)
Q Consensus 303 -----------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~~WYDNE~GY 371 (389)
++++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++||||||||
T Consensus 245 s~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vk~~~WyDNE~gy 324 (338)
T PLN02358 245 SVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGY 324 (338)
T ss_pred eEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCcceEEEcccCeEecCCEEEEEEEecCchhH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHH
Q 016451 372 SNRVLDLIEHMAL 384 (389)
Q Consensus 372 s~R~vdl~~~~~~ 384 (389)
||||+||+.||.+
T Consensus 325 s~r~~dl~~~~~~ 337 (338)
T PLN02358 325 SSRVVDLIVHMSK 337 (338)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999863
No 11
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-102 Score=766.87 Aligned_cols=294 Identities=60% Similarity=0.928 Sum_probs=284.6
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC-CCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~-~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
++||||||||||||+++|++.+++ ++|+|||||+ .+++++||||+|||+||+|.++++.++ +.+.|||+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~~~v~~~~-~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFDGEVEVKD-DALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCCCcccccC-CeEEECCceEEEEecC
Confidence 379999999999999999999998 7999999997 899999999999999999999999764 6899999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHC-CCCEEEEcCCCCC-CCeEEeecCccCCCCCCCeEecCChhhhhhH
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKG-GAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLA 245 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~a-GaKkVIISaps~D-~pt~V~GVN~~~y~~~~~IISnaSCTTncLA 245 (389)
+|++|||.++|+|+|+||||.|+++|++++|+++ |||||++|+|+++ +++||+||||+.|++.++||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999998 5999999999987 9999999999999988999999999999999
Q ss_pred HHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC-----------------------
Q 016451 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK----------------------- 302 (389)
Q Consensus 246 PvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak----------------------- 302 (389)
|++|+|+|+|||++|+|||||+||++|+++|||| +||||+|+|++||||++|||||
T Consensus 159 p~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt~ 237 (335)
T COG0057 159 PVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTP 237 (335)
T ss_pred HHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecCC
Confidence 9999999999999999999999999999999999 8899999999999999999999
Q ss_pred -------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEEEEeCCCC
Q 016451 303 -------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEW 369 (389)
Q Consensus 303 -------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~~WYDNE~ 369 (389)
++++||||++||+|++++|||+++|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||
T Consensus 238 ~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydNE~ 317 (335)
T COG0057 238 NVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDNEW 317 (335)
T ss_pred CcEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcceeEEEccceEeccCcEEEEEEEEeccc
Confidence 8999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred chhhhHHHHHHHHHHh
Q 016451 370 GYSNRVLDLIEHMALV 385 (389)
Q Consensus 370 GYs~R~vdl~~~~~~~ 385 (389)
||++|++|+..++...
T Consensus 318 gys~r~vD~~~~~~~~ 333 (335)
T COG0057 318 GYSNRVVDLLAMVAKA 333 (335)
T ss_pred cchHHHHHHHHHHhhh
Confidence 9999999997777653
No 12
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.4e-101 Score=765.58 Aligned_cols=293 Identities=44% Similarity=0.735 Sum_probs=282.9
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
|++||||||||||||.++|++.++++++||+|||+..++++|+|||||||+||+|+++++.++ +.|.+||++|++++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g-~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEG-DAIVINGKRIRTTQNK 79 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcC-CEEEECCEEEEEEecC
Confidence 568999999999999999999998889999999988999999999999999999999999865 6899999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC--CCeEEeecCccCCCC-CCCeEecCChhhhhh
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKP-NMNIVSNASCTTNCL 244 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D--~pt~V~GVN~~~y~~-~~~IISnaSCTTncL 244 (389)
+|++++|+ |+||||||||.|+++++|++|+++|||||++|+|.+| +|+||||||++.|++ .++||||||||||||
T Consensus 80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L 157 (334)
T PRK08955 80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL 157 (334)
T ss_pred ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence 99999998 9999999999999999999999999999999999754 699999999999998 378999999999999
Q ss_pred HHHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC----------------------
Q 016451 245 APLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK---------------------- 302 (389)
Q Consensus 245 APvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak---------------------- 302 (389)
+|++|+|||+|||++++|||||+||++|+++|++| +||||+|++|+||||++||+++
T Consensus 158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv 236 (334)
T PRK08955 158 APVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL 236 (334)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCccccceEccccCCcEEEEEEEecc
Confidence 99999999999999999999999999999999998 8999999999999999999988
Q ss_pred --------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEEEEeCCC
Q 016451 303 --------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNE 368 (389)
Q Consensus 303 --------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~~WYDNE 368 (389)
++++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|.+++++|+|+++|||||
T Consensus 237 ~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE 316 (334)
T PRK08955 237 ANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYDNE 316 (334)
T ss_pred CCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCchHheehhcCEEecCCEEEEEEEeCCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHH
Q 016451 369 WGYSNRVLDLIEHMAL 384 (389)
Q Consensus 369 ~GYs~R~vdl~~~~~~ 384 (389)
|||||||+||+.||..
T Consensus 317 ~gys~r~~dl~~~~~~ 332 (334)
T PRK08955 317 WGYANRTAELARKVGL 332 (334)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999999999964
No 13
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-101 Score=765.82 Aligned_cols=292 Identities=40% Similarity=0.659 Sum_probs=281.9
Q ss_pred eeEEEeccChhHHHHHHHHHcC---CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 90 TKVGINGFGRIGRLVLRVAAFR---DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r---~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
+||||||||||||.++|+|+++ ++++||||||+ .++++|+|||||||+||+|+++++.++ +.|.+||++|+++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~~~v~~~~-~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFAWDVRQER-DQLFVGDDAIRLLHE 79 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCCCcEEecC-CEEEECCEEEEEEEc
Confidence 6999999999999999999986 47999999995 799999999999999999999999875 699999999999999
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCC-C-CCeEEeecCccCCCCCCCeEecCChhhhhh
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-D-APMFVVGVNEKTYKPNMNIVSNASCTTNCL 244 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~-D-~pt~V~GVN~~~y~~~~~IISnaSCTTncL 244 (389)
++|+++||+++|+||||||||.|+++++++.|+++|||||++|+|++ | +++|||||||+.|++.++||||||||||||
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~L 159 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCI 159 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHHH
Confidence 99999999999999999999999999999999999999999999975 5 469999999999998788999999999999
Q ss_pred HHHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC----------------------
Q 016451 245 APLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK---------------------- 302 (389)
Q Consensus 245 APvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak---------------------- 302 (389)
+|++|+|||+|||++++||||||||++|+++|++| +||||+|++++||||++||+++
T Consensus 160 ap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVPv 238 (336)
T PRK13535 160 IPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPT 238 (336)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeCc
Confidence 99999999999999999999999999999999998 8999999999999999999988
Q ss_pred --------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEEEEeCCC
Q 016451 303 --------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNE 368 (389)
Q Consensus 303 --------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~~WYDNE 368 (389)
++++||||++|+++++|+|||||+|+++|+||+||+|++||+|||+.+|++++++|+|+++|||||
T Consensus 239 ~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE 318 (336)
T PRK13535 239 INVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNE 318 (336)
T ss_pred cCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCCccccccCCCCcceEEEcccCEEECCCEEEEEEEEcCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHH
Q 016451 369 WGYSNRVLDLIEHMAL 384 (389)
Q Consensus 369 ~GYs~R~vdl~~~~~~ 384 (389)
|||||||+||+.||..
T Consensus 319 ~gys~r~~d~~~~~~~ 334 (336)
T PRK13535 319 WGFANRMLDTTLAMAA 334 (336)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999999999964
No 14
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-100 Score=780.64 Aligned_cols=312 Identities=35% Similarity=0.564 Sum_probs=290.4
Q ss_pred cccccCCccccCCCCCcceeEEEeccChhHHHHHHHHHcC----CCCcEEEEe----CCCCCHHHHhhhhcccccccccC
Q 016451 72 ATATEIPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFR----DDVDVVAVN----DPFIDAKYMAYMFKYDSTHGVFK 143 (389)
Q Consensus 72 ~~~~~~~~~~~~~~~~m~ikVgINGfGrIGr~vlR~l~~r----~~~~iVaIN----d~~~~~~~layLlkyDSthGkf~ 143 (389)
+-.+++.+.........+.||||||||||||+++|+++++ ++++||||| |+ .++++++|||+|||+||+|+
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~-~d~~~~ayLLkyDSvhG~f~ 188 (477)
T PRK08289 110 FVAEELADAVGGADDIEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSE-GDLEKRASLLRRDSVHGPFN 188 (477)
T ss_pred HHHHHHhhhhcCCCCCCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCC-CCHHHHHHHhhhhcCCCCCC
Confidence 3345555555444434467999999999999999999987 579999995 55 79999999999999999999
Q ss_pred ceEEEec-CCeeEECCEEEEEEecCCCCCCCCCccCcc--EEEeccCCCCCHHHHHHHHH-CCCCEEEEcCCCCC-CCeE
Q 016451 144 GTINVVD-DSTLEINGKLIKVFSKRDPAEIPWGDYGVD--YVVESSGVFTTIAKASAHMK-GGAKKVVISAPSAD-APMF 218 (389)
Q Consensus 144 ~~v~~~~-~~~L~inGk~I~v~~~~dp~~i~W~~~gvD--~VvEsTG~f~t~e~a~~hl~-aGaKkVIISaps~D-~pt~ 218 (389)
+++++++ ++.|++||+.|+++++++|+++||+++|+| +||||||.|++++++.+||+ +||||||||||++| +|+|
T Consensus 189 ~~v~~~~~~~~liing~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~i 268 (477)
T PRK08289 189 GTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNI 268 (477)
T ss_pred CceEeecCCCEEEECCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeE
Confidence 9999862 368999999999999999999999999999 99999999999999999999 89999999999886 8999
Q ss_pred EeecCccCCCCCCCeEecCChhhhhhHHHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCC
Q 016451 219 VVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSST 298 (389)
Q Consensus 219 V~GVN~~~y~~~~~IISnaSCTTncLAPvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsT 298 (389)
||||||+.|+++++||||||||||||+|++|+|||+|||++|+|||||+||++|+++|++| ++|||+|++++||||++|
T Consensus 269 V~GVN~~~~~~~~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~RrgRaaa~NIIptsT 347 (477)
T PRK08289 269 VHGVNHSDITDEDKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRRGRSAPLNMVITET 347 (477)
T ss_pred EcccCHHHhCCCCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcccceeeeeeEecCC
Confidence 9999999998778899999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred CCCC------------------------------------CCCHHHHHHHHHHhh-cCCCCcccCcccc-ceEeccCCCC
Q 016451 299 GAAK------------------------------------GASYEDVKAAIKYAS-EGSLKGILGYTDE-DVVSNDFVGD 340 (389)
Q Consensus 299 Gaak------------------------------------~~~~e~In~~~k~as-~g~lkgil~yte~-~~VS~Df~g~ 340 (389)
|||| ++++||||++|++|+ +++|||||+|+++ |+||+||+|+
T Consensus 348 GAAkAv~kVLP~L~GKltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~ 427 (477)
T PRK08289 348 GAAKAVAKALPELAGKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGS 427 (477)
T ss_pred ChhhhhhhcccccCCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCC
Confidence 9998 899999999999999 4999999999999 7999999999
Q ss_pred CcceEEeCCCcccccCCeEEEEEEeCCCCchhhhHHHHHHHHHHhh
Q 016451 341 SRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVA 386 (389)
Q Consensus 341 ~~Ssi~D~~~t~~~~~~~vKl~~WYDNE~GYs~R~vdl~~~~~~~~ 386 (389)
+||+|||+.+|+++ ++++|+++||||||||||||+||++||++..
T Consensus 428 ~~SsI~D~~~T~v~-g~~vkv~~WYDNE~GYS~rvvdl~~~~~~~~ 472 (477)
T PRK08289 428 RHAGVVDSQATIVN-GNRAVLYVWYDNEFGYSCQVVRVMEQMAGVR 472 (477)
T ss_pred CchhheehhccEEc-CCEEEEEEEecCchhHHHHHHHHHHHHHhcc
Confidence 99999999999998 7899999999999999999999999998764
No 15
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=3.1e-100 Score=755.83 Aligned_cols=284 Identities=58% Similarity=0.949 Sum_probs=274.2
Q ss_pred eEEEeccChhHHHHHHHHHcC--CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCC-eeEECCE-EEEEEec
Q 016451 91 KVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDS-TLEINGK-LIKVFSK 166 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r--~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~-~L~inGk-~I~v~~~ 166 (389)
||||||||||||+++|+++++ ++++||||||+ .++++|+|||||||+||+|++++++++ + .|.+||+ .|.++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~~~v~~~~-~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFEGEVTADE-DKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCCCcEEecC-CceEEECCeEEEEEEec
Confidence 799999999999999999987 57999999997 899999999999999999999999875 5 6999999 9999999
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC-CCeEEeecCccCCCCCCCeEecCChhhhhhH
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLA 245 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D-~pt~V~GVN~~~y~~~~~IISnaSCTTncLA 245 (389)
++|+++||+++|+||||||||.|+++++|++|+++|||||++|+|++| +||||||||++.|++.++||||||||||||+
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 999999999999999999999999999999999999999999999877 7999999999999977789999999999999
Q ss_pred HHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC-----------------------
Q 016451 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK----------------------- 302 (389)
Q Consensus 246 PvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak----------------------- 302 (389)
|++|+||++|||++++|||||++|++|+++|+++ +||||+|++++||||++||++|
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~ 237 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTP 237 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEeccc
Confidence 9999999999999999999999999999999998 8999999999999999999988
Q ss_pred -------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccc--cCCeEEEEEEeCC
Q 016451 303 -------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGL--SASFMKLVSWYDN 367 (389)
Q Consensus 303 -------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~--~~~~vKl~~WYDN 367 (389)
++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|+++ +++|+||++||||
T Consensus 238 ~gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~~~k~~~WyDN 317 (327)
T TIGR01534 238 NVSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPYSSIVDATATKVTGLGGSLVKVVAWYDN 317 (327)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCcceEEEcccCeEEcCCCCEEEEEEEeCC
Confidence 8999999999999999999999999999999999999999999999999995 4899999999999
Q ss_pred CCchhhhHHH
Q 016451 368 EWGYSNRVLD 377 (389)
Q Consensus 368 E~GYs~R~vd 377 (389)
||||||||+|
T Consensus 318 E~gys~r~~d 327 (327)
T TIGR01534 318 EWGYSNRVVD 327 (327)
T ss_pred CceeeeEccC
Confidence 9999999986
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.3e-96 Score=729.72 Aligned_cols=284 Identities=40% Similarity=0.718 Sum_probs=273.8
Q ss_pred eEEEeccChhHHHHHHHHHcCC---CCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRD---DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~---~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
||||||||||||.++|++++++ +|+||+|||+ .++++++|||+|||+||+|+++++.++ +.|.+||+.|++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~~~v~~~~-~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFPGEVKVDG-DCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCCCcEEEeC-CEEEECCeEEEEEEcC
Confidence 6999999999999999999864 6999999995 799999999999999999999999876 6999999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCC-C-CCeEEeecCccCCCCCCCeEecCChhhhhhH
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-D-APMFVVGVNEKTYKPNMNIVSNASCTTNCLA 245 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~-D-~pt~V~GVN~~~y~~~~~IISnaSCTTncLA 245 (389)
+|+++||+++|+|+||||||.|.++++++.|+++|||+|++|+|+. | .++|||||||+.|++.++||||||||||||+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~la 158 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCIV 158 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999975 4 4589999999999987889999999999999
Q ss_pred HHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC-----------------------
Q 016451 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK----------------------- 302 (389)
Q Consensus 246 PvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak----------------------- 302 (389)
|++|+|||+|||++++|||||+||++|+++|++| +||||+|+|++||||++||+++
T Consensus 159 p~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv~ 237 (325)
T TIGR01532 159 PLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPTV 237 (325)
T ss_pred HHHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEeccc
Confidence 9999999999999999999999999999999998 8999999999999999999988
Q ss_pred -------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEEEEeCCCC
Q 016451 303 -------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEW 369 (389)
Q Consensus 303 -------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~~WYDNE~ 369 (389)
++++||||++|+++++|+|||||+|+++|+||+||+|++||+|||+.+|++++++|+|+++||||||
T Consensus 238 ~~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~ 317 (325)
T TIGR01532 238 NVTALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPHSAIVDGTQTRVSGPRLVKLLVWCDNEW 317 (325)
T ss_pred CcEEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCccccccCCCCcceEEEcccCEEecCCEEEEEEEeCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHH
Q 016451 370 GYSNRVLD 377 (389)
Q Consensus 370 GYs~R~vd 377 (389)
||||||+|
T Consensus 318 gys~r~~d 325 (325)
T TIGR01532 318 GFANRMLD 325 (325)
T ss_pred eeeeEccC
Confidence 99999987
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-82 Score=607.41 Aligned_cols=250 Identities=69% Similarity=1.098 Sum_probs=239.7
Q ss_pred hHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCCCCCCCccCc
Q 016451 100 IGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGV 179 (389)
Q Consensus 100 IGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~~i~W~~~gv 179 (389)
|||+++ + +.++++|+||||++++++|+|||+|||+||+|++++++++ .+++++|++|.++++++|..|+|.+.++
T Consensus 1 ig~~~~---~-~~~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~~~-~~~i~~G~~i~~~~~~~p~~i~w~~~g~ 75 (285)
T KOG0657|consen 1 IGRLVL---Q-RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKAEN-FKLIINGNPITIFQFRDPAKIPWGAKGA 75 (285)
T ss_pred CCcccc---c-cCCcccccccCcccccccccccccccccCCccccceeecC-CceeecCceEEeecccCcccCccccccc
Confidence 578887 2 6669999999999999999999999999999999999975 6899999999999999999999999999
Q ss_pred cEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCCCCeEEeecCccCCCCCCCeEecCChhhhhhHHHHHHHHhhcCceE
Q 016451 180 DYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILE 259 (389)
Q Consensus 180 D~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D~pt~V~GVN~~~y~~~~~IISnaSCTTncLAPvlkvL~d~fGI~~ 259 (389)
|+|+|+||.|++.|++..|+++||||||||+|++|.||||+|||+++|+++..||||+|||||||||++|+|||+|||.+
T Consensus 76 ~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~E 155 (285)
T KOG0657|consen 76 DIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIME 155 (285)
T ss_pred eeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheecccccccc
Confidence 99999999999999999999999999999999999999999999999999878999999999999999999999999999
Q ss_pred EeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC-----------------------------------CC
Q 016451 260 GLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK-----------------------------------GA 304 (389)
Q Consensus 260 g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak-----------------------------------~~ 304 (389)
++|||+|++|++|+++|||+.|+||++|.+.|||||++||||| ++
T Consensus 156 gLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~vsVvdl~~~~~k~a 235 (285)
T KOG0657|consen 156 GLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPVSVVDLTCHLEKPA 235 (285)
T ss_pred ccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcceEeeeeeccccccc
Confidence 9999999999999999999999999999999999999999998 78
Q ss_pred CHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEEEEeCCCCchhhhHHHHHHHHHH
Q 016451 305 SYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMAL 384 (389)
Q Consensus 305 ~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~~WYDNE~GYs~R~vdl~~~~~~ 384 (389)
+|||||+++|++++++||||| ||| +| ++|||||||||+|++||+.||++
T Consensus 236 ~~ddikkvvk~~~~~~lkGIL--te~--------------------------~f---ISWYDNE~GYS~rVvDl~~h~as 284 (285)
T KOG0657|consen 236 KYDDIKKVVKLASEIPLKGIL--TEH--------------------------HF---ISWYDNEFGYSNRVVDLMEHMAS 284 (285)
T ss_pred chHHHHHHHHHhhcccccccc--ccc--------------------------ce---eeeeccccccchHHHHHHHHHhc
Confidence 999999999999999999999 877 34 89999999999999999999986
Q ss_pred h
Q 016451 385 V 385 (389)
Q Consensus 385 ~ 385 (389)
+
T Consensus 285 k 285 (285)
T KOG0657|consen 285 K 285 (285)
T ss_pred C
Confidence 4
No 18
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=4.3e-51 Score=365.75 Aligned_cols=149 Identities=60% Similarity=1.003 Sum_probs=140.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
|||||||||||||+++|+++.+++|+||||||+..++++++|||+|||+||+|+++++.++ +.|.++|++|+++++++|
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~-~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDD-DGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEET-TEEEETTEEEEEEHTSSG
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceeccccccc-ceeEeecccccchhhhhh
Confidence 6999999999999999999999999999999996699999999999999999999999876 689999999999999999
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC--CCeEEeecCccCCCCCCCeEecCCh
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKPNMNIVSNASC 239 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D--~pt~V~GVN~~~y~~~~~IISnaSC 239 (389)
+++||+++|+|||+||||.|++++.++.|+++||||||+|+|++| +|||||||||+.|+++++||||+||
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred cccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 999999999999999999999999999999999999999999986 8999999999999997799999999
No 19
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=2.3e-47 Score=379.23 Aligned_cols=200 Identities=20% Similarity=0.243 Sum_probs=175.6
Q ss_pred EEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHH---HHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 92 VGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAK---YMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 92 VgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~---~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
|||||||||||.++|++.++++++|||||| .+++ +++|+++||++|+.+...+++++ ..+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD--~~~~~~a~lA~~lgyds~~~~~~~~~~~~~-~~l~v~g~--------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTK--TSPDFEAYRAKELGIPVYAASEEFIPRFEE-AGIEVAGT--------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEec--CChHHHHHHHHHhCCCEEeecCCcceEecc-CceEecCC---------
Confidence 699999999999999999888999999999 5888 78888889999954444677754 46777764
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC--CCeEEeecCccCCCCCCCeEecCChhhhhhHH
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 246 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D--~pt~V~GVN~~~y~~~~~IISnaSCTTncLAP 246 (389)
++++. .++|+|+||||.|...+.++.|++.|+|+|++++|++| +++||+||||++|++.+ +|||+|||||||+|
T Consensus 69 ~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~Lap 144 (333)
T TIGR01546 69 LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLVR 144 (333)
T ss_pred HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHHH
Confidence 44443 27999999999999999999999999999999999987 57999999999998644 99999999999999
Q ss_pred HHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccC-CC---CCCC--------------------
Q 016451 247 LAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPS-ST---GAAK-------------------- 302 (389)
Q Consensus 247 vlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPt-sT---Gaak-------------------- 302 (389)
++|+|+++|||++|+|||||. |+||+ ||||+| ++||||+ +| ++++
T Consensus 145 ~~~~L~~~fGI~~~~~Ttvh~-t~dq~--------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~i~g~AvrVPt 213 (333)
T TIGR01546 145 TLNAINDYSKVDKVRAVMVRR-AADPN--------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLNIETMAFVVPT 213 (333)
T ss_pred HHHHHHHhcCeEEEEEEEEee-cCChh--------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCCccEEEEEeCC
Confidence 999999999999999999997 99994 899999 6999999 45 4455
Q ss_pred --------------CCCHHHHHHHHHHhhc
Q 016451 303 --------------GASYEDVKAAIKYASE 318 (389)
Q Consensus 303 --------------~~~~e~In~~~k~as~ 318 (389)
++++||||++||++..
T Consensus 214 ~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 214 TLMHVHSIMVELKKPVTKDDIIDILENTPR 243 (333)
T ss_pred CCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence 8999999999999754
No 20
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=3.3e-46 Score=333.11 Aligned_cols=148 Identities=59% Similarity=0.932 Sum_probs=141.7
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+||||||||||||.++|.+.++++++||+|||+ .++++++|||+|||+||+|+.++++++ +.|.+||+.|+++++++|
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~~~v~~~~-~~l~i~g~~i~~~~~~~p 78 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFPGEVEVDE-DGLIVNGKKIKVLAERDP 78 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCCCcEEEeC-CEEEECCEEEEEEecCCh
Confidence 589999999999999999998889999999997 899999999999999999999999875 589999999999999999
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC-CCeEEeecCccCCCCCCCeEecCCh
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASC 239 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D-~pt~V~GVN~~~y~~~~~IISnaSC 239 (389)
.++||+++|+||||||||.|.++++++.|+++||||||||+|++| ++||||||||++|+++++||||+||
T Consensus 79 ~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 79 ANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred HHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 999999999999999999999999999999999999999999987 5699999999999987789999999
No 21
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=1.9e-40 Score=298.48 Aligned_cols=121 Identities=59% Similarity=0.942 Sum_probs=116.9
Q ss_pred hHHHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC---------------------
Q 016451 244 LAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK--------------------- 302 (389)
Q Consensus 244 LAPvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak--------------------- 302 (389)
|||++|+|||+|||++++|||||+||++|+++|+|| +||||+|++++||||++||++|
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP 79 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP 79 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence 799999999999999999999999999999999999 9999999999999999999999
Q ss_pred ---------------CCCHHHHHHHHHHhhcCCCCcccCccccceEeccCCCCCcceEEeCCCcccccCCeEEEEEEe
Q 016451 303 ---------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWY 365 (389)
Q Consensus 303 ---------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~~~vKl~~WY 365 (389)
++++||||++|+++++++++||++|+|+|+||+||+|++||+|||+.++++++++++|+++||
T Consensus 80 t~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY 157 (157)
T PF02800_consen 80 TPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY 157 (157)
T ss_dssp SSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred ecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence 899999999999999999999999999999999999999999999999999999999999999
No 22
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-37 Score=308.79 Aligned_cols=224 Identities=22% Similarity=0.272 Sum_probs=172.6
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhc---ccccccccCceEE-EecCCeeEECCEEEEEE
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK---YDSTHGVFKGTIN-VVDDSTLEINGKLIKVF 164 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlk---yDSthGkf~~~v~-~~~~~~L~inGk~I~v~ 164 (389)
++||||||||||||.++|++.++++++||+|+|. ++++.+||++ || .||+++...+ +++ ..+.+.+.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~-~~~~~~~~~~~~~~-~~i~V~~~----- 71 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYP-LYVADPEREKAFEE-AGIPVAGT----- 71 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCC-ccccCccccccccC-CceEEcCC-----
Confidence 3799999999999999999999999999999994 6899999988 55 5777665554 322 23444432
Q ss_pred ecCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCC-CC--CeEEeecCccCCCCCCCeEecCChhh
Q 016451 165 SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-DA--PMFVVGVNEKTYKPNMNIVSNASCTT 241 (389)
Q Consensus 165 ~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~-D~--pt~V~GVN~~~y~~~~~IISnaSCTT 241 (389)
+.++. .++|+||||||.+.+.+.++.|+++| |+||+++|.. ++ .+||+|||++.|.+. ++|+|+||||
T Consensus 72 ----~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT 142 (341)
T PRK04207 72 ----IEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-DYVRVVSCNT 142 (341)
T ss_pred ----hhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-CcEEccChHH
Confidence 22321 27999999999999999999999999 7899999863 33 358999999999763 4999999999
Q ss_pred hhhHHHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCC----CCCCC---------------
Q 016451 242 NCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSS----TGAAK--------------- 302 (389)
Q Consensus 242 ncLAPvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPts----TGaak--------------- 302 (389)
|||+|++|+||++|||++++|||||++|. + +++| |+++.||||.. +..++
T Consensus 143 ~~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~~--r~~~~niip~p~~~~~~~g~~v~~vlp~l~i~~~a 211 (341)
T PRK04207 143 TGLCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEVK--RGPINAIVPDPVTVPSHHGPDVKTVLPDLDITTMA 211 (341)
T ss_pred HHHHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chhh--HHHhcCcCCCCCCCCCCchhHHHhhCCCCceEEEE
Confidence 99999999999999999999999999983 3 3553 88999999752 12222
Q ss_pred -------------------CCCHHHHHHHHHHhhcC----CCCcccCccccceEeccCCCCCc
Q 016451 303 -------------------GASYEDVKAAIKYASEG----SLKGILGYTDEDVVSNDFVGDSR 342 (389)
Q Consensus 303 -------------------~~~~e~In~~~k~as~g----~lkgil~yte~~~VS~Df~g~~~ 342 (389)
++++|||+++|++++.= .-.|+-+ +.+++--.+=.|.|+
T Consensus 212 vrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~~~~~~~s-~~~~~~~~~~~~rp~ 273 (341)
T PRK04207 212 VKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRASDGIDS-TAELIEYARDLGRPR 273 (341)
T ss_pred EEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeeccccCCCC-hHHHhHHHHHcCCCc
Confidence 89999999999997542 1234444 444443333344443
No 23
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.96 E-value=1.3e-28 Score=244.73 Aligned_cols=176 Identities=26% Similarity=0.352 Sum_probs=147.3
Q ss_pred eeEEEec-cChhHHHHHHHHHcC--CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 90 TKVGING-FGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r--~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
+||+|.| .|.+|+.++|.|.++ +.++|+++... . +. ++.+.++|+.+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~--------------~---------~~--g~~l~~~g~~i~v~-- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA--------------R---------SA--GKELSFKGKELKVE-- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc--------------c---------cC--CCeeeeCCceeEEe--
Confidence 5999999 999999999999985 55677776431 0 00 13455666666663
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCC-----CCCeEEeecCccCCCCC--CCeEecCCh
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVNEKTYKPN--MNIVSNASC 239 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~-----D~pt~V~GVN~~~y~~~--~~IISnaSC 239 (389)
++...+|. ++|+||+|+|.+.+++.+++|+++|+ +||+.+++ |+|++++|||++.++.. ++||+||+|
T Consensus 55 -d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C 129 (334)
T PRK14874 55 -DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNC 129 (334)
T ss_pred -eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccH
Confidence 44555785 89999999999999999999999999 78865542 47999999999999764 479999999
Q ss_pred hhhhhHHHHHHHHhhcCceEEeeecccccCC------------CcccccCCC--CCCCCCCcccccccccCC
Q 016451 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTA------------TQKTVDGPS--MKDWRGGRGASQNIIPSS 297 (389)
Q Consensus 240 TTncLAPvlkvL~d~fGI~~g~mTTVHA~T~------------tQ~lvD~p~--~kd~R~~Raaa~NIIPts 297 (389)
+|+|++|.+++|+++|+|+++.|||+|++|+ +|+++|+++ .+++||+|++++|+||+.
T Consensus 130 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~ 201 (334)
T PRK14874 130 STIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHI 201 (334)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcC
Confidence 9999999999999999999999999999995 899999775 278999999999999997
No 24
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=99.94 E-value=1.3e-26 Score=231.15 Aligned_cols=175 Identities=24% Similarity=0.321 Sum_probs=138.7
Q ss_pred eEEEec-cChhHHHHHHHHHcCC--CCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRD--DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~--~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
||+|.| .|.+|+.++|.|.+++ .++++.+.. .-+. +..+.+.|+.+.+...
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as-----------------------~~~~--g~~~~~~~~~~~~~~~- 54 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLAS-----------------------DRSA--GRKVTFKGKELEVNEA- 54 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEec-----------------------cccC--CCeeeeCCeeEEEEeC-
Confidence 689999 9999999999998853 333332211 0011 2355566655555322
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC-----CCCCeEEeecCccCCCC--CCCeEecCChh
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP--NMNIVSNASCT 240 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps-----~D~pt~V~GVN~~~y~~--~~~IISnaSCT 240 (389)
+ ...|. ++|+||+|+|.+.+++.++.|+++|+ +||+.++ +|+|++|+|||++.++. .+++||||+|+
T Consensus 55 ~--~~~~~--~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~ 128 (339)
T TIGR01296 55 K--IESFE--GIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCS 128 (339)
T ss_pred C--hHHhc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcH
Confidence 2 22353 89999999999999999999999999 6886664 24899999999999876 25599999999
Q ss_pred hhhhHHHHHHHHhhcCceEEeeecccccCCC------------cccccCCCCCC-------CCCCcccccccccCC
Q 016451 241 TNCLAPLAKVVHEEFGILEGLMTTVHATTAT------------QKTVDGPSMKD-------WRGGRGASQNIIPSS 297 (389)
Q Consensus 241 TncLAPvlkvL~d~fGI~~g~mTTVHA~T~t------------Q~lvD~p~~kd-------~R~~Raaa~NIIPts 297 (389)
|+|+++.+++|+++|+|+++.|||+|++|+. |+++++++..+ .+++|++++||||+.
T Consensus 129 ~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~ 204 (339)
T TIGR01296 129 TIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHI 204 (339)
T ss_pred HHHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcC
Confidence 9999999999999999999999999999995 77888876333 899999999999994
No 25
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.93 E-value=7.3e-26 Score=223.89 Aligned_cols=194 Identities=17% Similarity=0.253 Sum_probs=157.7
Q ss_pred ceeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 89 ~ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
.++||| | +|.+||.++++|.+|+ |+ |.++ |||. | ..... ++++.|+|+.+.|.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~-fp---v~~l--------~l~~--s-------~~~s~-gk~i~f~g~~~~V~--- 56 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSD-LE---IEQI--------SIVE--I-------EPFGE-EQGIRFNNKAVEQI--- 56 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcC-Cc---hhhe--------eecc--c-------ccccC-CCEEEECCEEEEEE---
Confidence 469999 9 9999999999999996 77 4543 5553 2 21112 36899999999994
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC-----CCCCeEEeecCccCCCC--CCCeEecCChh
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP--NMNIVSNASCT 240 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps-----~D~pt~V~GVN~~~y~~--~~~IISnaSCT 240 (389)
+.++.+|. ++|+||+ +|...++++++...++|| +||++.| +|+|++|++||++.+.. ...||+||+|+
T Consensus 57 ~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNCs 131 (322)
T PRK06901 57 APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQ 131 (322)
T ss_pred ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcHH
Confidence 46667786 8999999 999999999999999999 9999887 36999999999998875 35799999999
Q ss_pred hhhhHHHHHHHHhhcCceEEeeecccccCC------------CcccccC-CCCCCCCCCcccccccccCCCC--------
Q 016451 241 TNCLAPLAKVVHEEFGILEGLMTTVHATTA------------TQKTVDG-PSMKDWRGGRGASQNIIPSSTG-------- 299 (389)
Q Consensus 241 TncLAPvlkvL~d~fGI~~g~mTTVHA~T~------------tQ~lvD~-p~~kd~R~~Raaa~NIIPtsTG-------- 299 (389)
|.+|+..|++||+.|||+++.+|||||+++ ++.++++ |. + ...++.|+|+||..-.
T Consensus 132 Ti~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~-~--~~~~~iAFNviP~ig~~m~~EtrK 208 (322)
T PRK06901 132 VSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPL-D--EEEQRLAFDVFPANAQNLELQLQK 208 (322)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCC-C--CCceeeeccccccCCccHHHHHHH
Confidence 999999999999999999999999999999 2344555 22 1 2248999999999841
Q ss_pred ---CC-C------------------------CCCHHHHHHHHHHh
Q 016451 300 ---AA-K------------------------GASYEDVKAAIKYA 316 (389)
Q Consensus 300 ---aa-k------------------------~~~~e~In~~~k~a 316 (389)
.- + +.+.|++.++++++
T Consensus 209 Il~~l~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~ 253 (322)
T PRK06901 209 IFPQLENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQN 253 (322)
T ss_pred HhCCcccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhC
Confidence 11 1 88999999988875
No 26
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.90 E-value=6.6e-23 Score=203.55 Aligned_cols=183 Identities=25% Similarity=0.338 Sum_probs=142.1
Q ss_pred ceeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 89 ~ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
++||||.| +|.+|+.+++.|.++ +|++ ... ++|. | +.++ +.+.+.+.|+.+.+.. .
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~-~f~~---~~~--------~~~A--S-------~rSa-G~~~~~f~~~~~~v~~-~ 57 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEER-HFPF---EEL--------VLLA--S-------ARSA-GKKYIEFGGKSIGVPE-D 57 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhc-CCCc---ceE--------EEEe--c-------cccc-CCccccccCccccCcc-c
Confidence 36999999 999999999999997 3552 110 2332 2 3344 2223888888766632 1
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC-----CCCCeEEeecCccCCCCC--CC-eEecCCh
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKPN--MN-IVSNASC 239 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps-----~D~pt~V~GVN~~~y~~~--~~-IISnaSC 239 (389)
-.+...|. ++||||+|.|...+++.+++..++|+ +||++.| +|+|+||++||.+.+... .. ||+||+|
T Consensus 58 ~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpNC 133 (334)
T COG0136 58 AADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNC 133 (334)
T ss_pred cccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECCCh
Confidence 15567787 89999999999999999999999998 9999987 379999999999886542 34 9999999
Q ss_pred hhhhhHHHHHHHHhhcCceEEeeecccccCCCcc------------cccCCCCCCCCCCcccccccccCCCCC
Q 016451 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTATQK------------TVDGPSMKDWRGGRGASQNIIPSSTGA 300 (389)
Q Consensus 240 TTncLAPvlkvL~d~fGI~~g~mTTVHA~T~tQ~------------lvD~p~~kd~R~~Raaa~NIIPtsTGa 300 (389)
||.+|++.||+|+++|||+++.++||||+++.=. +.++.. -+.. ++..|+|+||...+-
T Consensus 134 st~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~-i~~~-~~~iAfNviP~I~~~ 204 (334)
T COG0136 134 STIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIP-ILPI-GYPLAFNVIPHIDGF 204 (334)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcc-cccc-cccccccccccCCcc
Confidence 9999999999999999999999999999998322 223322 1112 889999999999883
No 27
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=99.89 E-value=3.3e-23 Score=208.66 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=124.7
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
+||||+| +|.+|+.+++.|++..+|++ ..+ ++|. | . +. ++..+.++|+.+.+. +
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~---~~~--------~~~s--s-------~-~s-~g~~~~f~~~~~~v~---~ 55 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDA---IRP--------VFFS--T-------S-QL-GQAAPSFGGTTGTLQ---D 55 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCcc---ccE--------EEEE--c-------h-hh-CCCcCCCCCCcceEE---c
Confidence 4899999 99999999999995556873 221 3332 2 1 11 135678888877664 3
Q ss_pred CCCC-CCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC-----CCCCeEEeecCccCCCCC--CCe--EecCC
Q 016451 169 PAEI-PWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKPN--MNI--VSNAS 238 (389)
Q Consensus 169 p~~i-~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps-----~D~pt~V~GVN~~~y~~~--~~I--ISnaS 238 (389)
..+. .|. ++|+||+|.|...+++.++...++|+..+||++.| +|+|++|++||++.+... ..| |+||+
T Consensus 56 ~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianPN 133 (366)
T TIGR01745 56 AFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGGN 133 (366)
T ss_pred Cccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECcC
Confidence 4444 564 89999999999999999999999995448999887 369999999999987652 567 89999
Q ss_pred hhhhhhHHHHHHHHhhcCceEEeeecccccCC
Q 016451 239 CTTNCLAPLAKVVHEEFGILEGLMTTVHATTA 270 (389)
Q Consensus 239 CTTncLAPvlkvL~d~fGI~~g~mTTVHA~T~ 270 (389)
|||..|+..|++||+.|||+++.+|||||+++
T Consensus 134 Cst~~l~~aL~pL~~~~~i~~v~VsTyQAvSG 165 (366)
T TIGR01745 134 CTVSLMLMSLGGLFANDLVEWVSVATYQAASG 165 (366)
T ss_pred HHHHHHHHHHHHHHhccCccEEEEEechhhhh
Confidence 99999999999999999999999999999999
No 28
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.86 E-value=4.1e-21 Score=192.55 Aligned_cols=179 Identities=19% Similarity=0.315 Sum_probs=141.3
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
+||||.| +|.+|+.++|.|.+.++|++ .++ +++. | ..++ ++.+.+.|+.+.+.. -+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v---~~l--------~~~a--S-------~~sa--Gk~~~~~~~~l~v~~-~~ 62 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNI---AEV--------TLLS--S-------KRSA--GKTVQFKGREIIIQE-AK 62 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCc---ccE--------EEEE--C-------cccC--CCCeeeCCcceEEEe-CC
Confidence 6999999 99999999999997777883 221 1221 2 1122 356778887666643 24
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC-----CCCCeEEeecCccCCCCCCCeEecCChhhhh
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKPNMNIVSNASCTTNC 243 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps-----~D~pt~V~GVN~~~y~~~~~IISnaSCTTnc 243 (389)
+. .|. ++|+||.|+|...+++.++...++|+ +||+..+ .|+|.++++||.+.+....+||+||+|+|++
T Consensus 63 ~~--~~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~tt~ 136 (347)
T PRK06728 63 IN--SFE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSALQ 136 (347)
T ss_pred HH--Hhc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHHHH
Confidence 43 353 79999999999999999999999998 8898775 3699999999999887644799999999999
Q ss_pred hHHHHHHHHhhcCceEEeeecccccCC------------CcccccCCCCCCCCCC-------cccccccccCC
Q 016451 244 LAPLAKVVHEEFGILEGLMTTVHATTA------------TQKTVDGPSMKDWRGG-------RGASQNIIPSS 297 (389)
Q Consensus 244 LAPvlkvL~d~fGI~~g~mTTVHA~T~------------tQ~lvD~p~~kd~R~~-------Raaa~NIIPts 297 (389)
++..|++|+++|+|+++.++|++++|+ +..++++...+...++ +..++|+||..
T Consensus 137 ~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i 209 (347)
T PRK06728 137 MVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQV 209 (347)
T ss_pred HHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcC
Confidence 999999999999999999999999999 4455665221333566 99999999997
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.83 E-value=3.6e-20 Score=187.06 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=120.9
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
+||||+| +|.+|+.++|.+++.++|+ +.++ +++ .| . +. ++..+.++|+...++...+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~---~~~l--------~~~--ss-------~-~s-g~~~~~f~g~~~~v~~~~~ 59 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFD---LIEP--------VFF--ST-------S-QA-GGAAPSFGGKEGTLQDAFD 59 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCC---cCcE--------EEe--cc-------h-hh-CCcccccCCCcceEEecCC
Confidence 7999999 9999999999666655687 2221 111 11 0 11 1223467777666654333
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC-----CCCCeEEeecCccCCCCC--C--CeEecCCh
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKPN--M--NIVSNASC 239 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps-----~D~pt~V~GVN~~~y~~~--~--~IISnaSC 239 (389)
+. .|. ++|+||+|+|...+.+.++...++|++.+||+..+ +|+|++|++||++.+... . ++|+||+|
T Consensus 60 ~~--~~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanPnC 135 (369)
T PRK06598 60 ID--ALK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGGNC 135 (369)
T ss_pred hh--Hhc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcCCh
Confidence 33 353 79999999999999999999999996658998876 369999999999987642 2 48999999
Q ss_pred hhhhhHHHHHHHHhhcCceEEeeecccccCC
Q 016451 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTA 270 (389)
Q Consensus 240 TTncLAPvlkvL~d~fGI~~g~mTTVHA~T~ 270 (389)
+|++++..|++|++.++|+++.++|++++|+
T Consensus 136 ~tt~~~laL~PL~~~~~i~~viVst~qavSG 166 (369)
T PRK06598 136 TVSLMLMALGGLFKNDLVEWVSVMTYQAASG 166 (369)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEeeecccc
Confidence 9999999999999999999999999999999
No 30
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.82 E-value=3.8e-19 Score=177.80 Aligned_cols=177 Identities=24% Similarity=0.329 Sum_probs=140.8
Q ss_pred cceeEEEec-cChhHHHHHHHHHcC--CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEE
Q 016451 88 GNTKVGING-FGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVF 164 (389)
Q Consensus 88 m~ikVgING-fGrIGr~vlR~l~~r--~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~ 164 (389)
+++||||.| +|.+|+.++|+|.++ |.++|+.+..- + ++ ++.+.+.|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~--------------~---------sa--G~~~~~~~~~~~v~ 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE--------------E---------SA--GETLRFGGKSVTVQ 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc--------------C---------cC--CceEEECCcceEEE
Confidence 468999999 999999999999995 66666555331 1 11 24666777766663
Q ss_pred ecCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC-----CCCCeEEeecCccCCCC--CCCeEecC
Q 016451 165 SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP--NMNIVSNA 237 (389)
Q Consensus 165 ~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps-----~D~pt~V~GVN~~~y~~--~~~IISna 237 (389)
+++++.|. ++|+||.|++.-.+.+.++...++|+ +||+..+ +|.|.++++||.+.++. +.+||+||
T Consensus 58 ---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnP 130 (336)
T PRK08040 58 ---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVA 130 (336)
T ss_pred ---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECC
Confidence 56678886 79999999999999999999999999 7887665 25899999999944432 36799999
Q ss_pred ChhhhhhHHHHHHHHhhcCceEEeeecccccCC------------CcccccCCCCCCCCCCcccccccccC
Q 016451 238 SCTTNCLAPLAKVVHEEFGILEGLMTTVHATTA------------TQKTVDGPSMKDWRGGRGASQNIIPS 296 (389)
Q Consensus 238 SCTTncLAPvlkvL~d~fGI~~g~mTTVHA~T~------------tQ~lvD~p~~kd~R~~Raaa~NIIPt 296 (389)
+|+|++++..|++|+++++|+++.++|++++|+ +..+++|...+...++++.++|++|.
T Consensus 131 gC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~py 201 (336)
T PRK08040 131 DSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPL 201 (336)
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeec
Confidence 999999999999999999999999999999999 23345552223356788899999999
No 31
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.81 E-value=6.6e-19 Score=176.10 Aligned_cols=186 Identities=21% Similarity=0.234 Sum_probs=129.8
Q ss_pred cceeEEEec-cChhHHHHHHHHHcCCCCcEEEE-eCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEe
Q 016451 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAV-NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS 165 (389)
Q Consensus 88 m~ikVgING-fGrIGr~vlR~l~~r~~~~iVaI-Nd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~ 165 (389)
|++||+|+| +|.+|+.++|.|.++++++|+++ -.. ...-..+ +..|+ +... + .+.-.-+.+.+.
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~----~~~G~~~--~~~~~-~~~~----~--~~~~~~~~~~v~- 67 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE----RSAGKTY--GEAVR-WQLD----G--PIPEEVADMEVV- 67 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh----hhcCCcc--ccccc-cccc----c--cccccccceEEE-
Confidence 568999999 99999999999999999999998 321 1100000 01010 0000 0 000000122332
Q ss_pred cCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC---CCCCeEEeecCccCCCC----------CCC
Q 016451 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS---ADAPMFVVGVNEKTYKP----------NMN 232 (389)
Q Consensus 166 ~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps---~D~pt~V~GVN~~~y~~----------~~~ 232 (389)
..+++. |. ++|+||+|++...+.+.++...+.|++.|..|+.. .+.|.+++++|++.|.. +.+
T Consensus 68 ~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~~ 143 (349)
T PRK08664 68 STDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGF 143 (349)
T ss_pred eCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCCce
Confidence 224443 32 78999999999988888887778898544444432 24789999999876631 136
Q ss_pred eEecCChhhhhhHHHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCC
Q 016451 233 IVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGA 300 (389)
Q Consensus 233 IISnaSCTTncLAPvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGa 300 (389)
+|+||+|+|+|+++.+++|++ |||+++.|||+|++|+.++- .+..+.+++|++|..++.
T Consensus 144 iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~--------~~~~~~~~~N~~p~~~~~ 202 (349)
T PRK08664 144 IVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYP--------GVPSMDIVDNVIPYIGGE 202 (349)
T ss_pred EEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCcc--------cchhhhhhcCcccccCch
Confidence 999999999999999999999 99999999999999998643 223567899999988775
No 32
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.81 E-value=2.8e-19 Score=178.32 Aligned_cols=220 Identities=20% Similarity=0.200 Sum_probs=153.3
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCH-HHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDA-KYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~-~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
+||||+| +|.+|+.++|.+.++++++|+++-+..... +.+..++.+ ..|+.+.+ .+ ..+.+. .-
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~-~~~~~~~~--------~~----~~~~~~-~~ 66 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKW-IEPGDMPE--------YV----RDLPIV-EP 66 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccc-cccCCCcc--------cc----ceeEEE-eC
Confidence 5899999 899999999999998889999985421000 001011100 00000000 00 112221 12
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC---CCCCeEEeecCccCCCC---------CCCeEe
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS---ADAPMFVVGVNEKTYKP---------NMNIVS 235 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps---~D~pt~V~GVN~~~y~~---------~~~IIS 235 (389)
+++ .| .++|+||.|++...+.+.++...++|++-+..|+.. +++|.+++++|++.|.. ..+||+
T Consensus 67 ~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVa 142 (341)
T TIGR00978 67 EPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVT 142 (341)
T ss_pred CHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEe
Confidence 232 34 379999999999999999988889999543334442 34899999999986652 135999
Q ss_pred cCChhhhhhHHHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCC--------------
Q 016451 236 NASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAA-------------- 301 (389)
Q Consensus 236 naSCTTncLAPvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaa-------------- 301 (389)
||+|+|+|+++.+++|+++++|+++.|||+|++|+.++... + .+..++|++|...+..
T Consensus 143 nPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~-----~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~~~ 214 (341)
T TIGR00978 143 NPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGV-----P---SMDILDNIIPHIGGEEEKIERETRKILGKL 214 (341)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCC-----c---cchhhCCeEecCcHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999986521 1 2457889998876551
Q ss_pred --------C--------------------------CCCHHHHHHHHHHhhcCCCCcccCccccceEec
Q 016451 302 --------K--------------------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSN 335 (389)
Q Consensus 302 --------k--------------------------~~~~e~In~~~k~as~g~lkgil~yte~~~VS~ 335 (389)
. +++.|||+++++++.+.++...|.=+.+|+|-.
T Consensus 215 ~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~ 282 (341)
T TIGR00978 215 ENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIV 282 (341)
T ss_pred ccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEE
Confidence 1 688999999999987765555555555666644
No 33
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.76 E-value=2.9e-17 Score=164.26 Aligned_cols=176 Identities=17% Similarity=0.207 Sum_probs=135.2
Q ss_pred eeEEEec-cChhHHHHHHHHHcC--CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 90 TKVGING-FGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r--~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
+||+|.| +|.+|+.++|+|.++ +.++|+.+-.. . ++ ++.+.+.|+...+.
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~--------------~---------~a--G~~l~~~~~~l~~~-- 57 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS--------------E---------SA--GHSVPFAGKNLRVR-- 57 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc--------------c---------cC--CCeeccCCcceEEe--
Confidence 7999999 999999999999965 55665555431 0 11 23455666544442
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC----CCCCeEEeecCccCCCC--CCCeEecCChh
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS----ADAPMFVVGVNEKTYKP--NMNIVSNASCT 240 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps----~D~pt~V~GVN~~~y~~--~~~IISnaSCT 240 (389)
+++..+|. ++|+||.|++...+.+.++..+++|+ +||+..+ .|+|.++++||.+.+.. +.+||+||+|+
T Consensus 58 -~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPgC~ 132 (336)
T PRK05671 58 -EVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPSAS 132 (336)
T ss_pred -eCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCCcH
Confidence 23333463 79999999999989999998889998 5786654 36999999999998765 25899999999
Q ss_pred hhhhHHHHHHHHhhcCceEEeeecccccCC-----Ccc-------cccC-CCCCCCCCCcccccccccCCC
Q 016451 241 TNCLAPLAKVVHEEFGILEGLMTTVHATTA-----TQK-------TVDG-PSMKDWRGGRGASQNIIPSST 298 (389)
Q Consensus 241 TncLAPvlkvL~d~fGI~~g~mTTVHA~T~-----tQ~-------lvD~-p~~kd~R~~Raaa~NIIPtsT 298 (389)
|++++..|++|++.|+++++.++|++++|+ .+. +.++ +. +.-.++++.|+|++|...
T Consensus 133 ~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y-~~~~~~~~iafn~~P~ig 202 (336)
T PRK05671 133 AVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPL-EPRFFDRQVAFNLLAQVG 202 (336)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCc-cccccccccccccccccC
Confidence 999999999999999999999999999998 122 2222 22 334688999999999764
No 34
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.73 E-value=3.9e-17 Score=163.74 Aligned_cols=191 Identities=19% Similarity=0.242 Sum_probs=141.0
Q ss_pred cceeEEEec-cChhHHHHHHHHHcC--CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEE
Q 016451 88 GNTKVGING-FGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVF 164 (389)
Q Consensus 88 m~ikVgING-fGrIGr~vlR~l~~r--~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~ 164 (389)
+++||+|.| +|.+|+.++|.|.++ +.++|+.+-.. + +. ++.+.++|+.+.+.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~--------------r---------sa--Gk~~~~~~~~~~v~ 60 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA--------------R---------SA--GKKVTFEGRDYTVE 60 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc--------------C---------CC--CCeeeecCceeEEE
Confidence 347999999 999999999999985 44555444221 0 11 23445555444442
Q ss_pred ecCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC-----CCCCeEEeecCccCCCCC------CCe
Q 016451 165 SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKPN------MNI 233 (389)
Q Consensus 165 ~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps-----~D~pt~V~GVN~~~y~~~------~~I 233 (389)
. -++. .|. ++|+||.|+|...+.+.++...++|+ +||+..+ .+.|.+++++|.+.++.. .+|
T Consensus 61 ~-~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~i 133 (344)
T PLN02383 61 E-LTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGAL 133 (344)
T ss_pred e-CCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcE
Confidence 2 2222 343 79999999999999999998888998 6887665 258999999999987752 249
Q ss_pred EecCChhhhhhHHHHHHHHhhcCceEEeeecccccCC------------CcccccCCCCCCCCCCcccccccccCCCCCC
Q 016451 234 VSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTA------------TQKTVDGPSMKDWRGGRGASQNIIPSSTGAA 301 (389)
Q Consensus 234 ISnaSCTTncLAPvlkvL~d~fGI~~g~mTTVHA~T~------------tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaa 301 (389)
|+||+|+|.+++..|++|+++++|+++.++|++++|+ +..++.+-.....+.+...|+|++|......
T Consensus 134 IanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~ 213 (344)
T PLN02383 134 IANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQ 213 (344)
T ss_pred EECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccc
Confidence 9999999999999999999999999999999999999 2333444111334678899999999875433
Q ss_pred C-CCCHHHHH
Q 016451 302 K-GASYEDVK 310 (389)
Q Consensus 302 k-~~~~e~In 310 (389)
+ .-+-+|++
T Consensus 214 ~~g~~~~E~~ 223 (344)
T PLN02383 214 ENGYNEEEMK 223 (344)
T ss_pred cCCCChHHHH
Confidence 3 33457776
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.57 E-value=1.2e-13 Score=138.33 Aligned_cols=156 Identities=19% Similarity=0.175 Sum_probs=116.5
Q ss_pred cceeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 88 m~ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
|++||||.| +|.+|+.++|.+.++++++++++-+.. ... ..+. ..|+.+... . ...+ .
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g---~~l~--~~~~~~~~~----------~---~~~~-~- 59 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAG---KPLS--DVHPHLRGL----------V---DLVL-E- 59 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccC---cchH--HhCcccccc----------c---Ccee-e-
Confidence 558999999 799999999999999889999987631 110 0000 111111100 0 0111 1
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCC------C------------------CCeEEeec
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA------D------------------APMFVVGV 222 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~------D------------------~pt~V~GV 222 (389)
+.++..|. ++|+||.|++.....+.+...+++|+ +||+..++ | .|..++++
T Consensus 60 -~~~~~~~~--~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~ 134 (343)
T PRK00436 60 -PLDPEILA--GADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPEL 134 (343)
T ss_pred -cCCHHHhc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCcc
Confidence 12222343 69999999999999999998888887 78876641 2 58999999
Q ss_pred CccCCCCCCCeEecCChhhhhhHHHHHHHHhhcCce--EEeeecccccCC
Q 016451 223 NEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGIL--EGLMTTVHATTA 270 (389)
Q Consensus 223 N~~~y~~~~~IISnaSCTTncLAPvlkvL~d~fGI~--~g~mTTVHA~T~ 270 (389)
|.+.+.+ .++|+||+|+|+++...|++|++..+|+ +..++|++++|+
T Consensus 135 ~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SG 183 (343)
T PRK00436 135 NREEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSG 183 (343)
T ss_pred CHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEeccc
Confidence 9998875 5899999999999999999999999998 899999999998
No 36
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.49 E-value=3.9e-13 Score=133.60 Aligned_cols=139 Identities=13% Similarity=0.081 Sum_probs=109.5
Q ss_pred cceeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 88 m~ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
|++||||.| +|.+|+.++|.|.++++++|+++..- + +..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~--------------~-------------~~~~------------ 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEA--------------K-------------RKDA------------ 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecC--------------C-------------CCcc------------
Confidence 789999999 99999999999999999998877531 0 0001
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC-----CCCCeEEeecCccCCCC--CCCeEecCCh
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP--NMNIVSNASC 239 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps-----~D~pt~V~GVN~~~y~~--~~~IISnaSC 239 (389)
.+.+..|. ++|+||.|++.-.+++.++...+.|+ +||+..+ .+.|..++++|++..+. ..++|+||.|
T Consensus 42 -~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPgC 116 (313)
T PRK11863 42 -AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPGC 116 (313)
T ss_pred -cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCCc
Confidence 11122344 68999999999999999998888888 6887664 25899999999654332 4689999999
Q ss_pred hhhhhHHHHHHHHhhcCceEEeeecccccCC
Q 016451 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTA 270 (389)
Q Consensus 240 TTncLAPvlkvL~d~fGI~~g~mTTVHA~T~ 270 (389)
.++++...|++|+++..|++...++++++|+
T Consensus 117 ~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG 147 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLLPADYPVSINAVSG 147 (313)
T ss_pred HHHHHHHHHHHHHHcCCcccCceEEEEEccc
Confidence 9999999999999976665655788999964
No 37
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.48 E-value=2.7e-13 Score=137.95 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=114.7
Q ss_pred cCCccccCCCCCcceeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCee
Q 016451 76 EIPPTIQKSRSDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTL 154 (389)
Q Consensus 76 ~~~~~~~~~~~~m~ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L 154 (389)
..+++...+ .|++||+|.| +|.+|+.++|.|.+++.++|+.+..- . + .|+. +... ..
T Consensus 27 ~~~~~~~~~--~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---~----------s-aG~~---i~~~---~~ 84 (381)
T PLN02968 27 SSASSSVKS--EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---R----------K-AGQS---FGSV---FP 84 (381)
T ss_pred ccCCCcccc--ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---h----------h-cCCC---chhh---Cc
Confidence 334444444 4667999999 99999999999999998998887541 0 0 1110 0000 00
Q ss_pred EECCEEEEEEecCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC-----CC--------CCeEEee
Q 016451 155 EINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----AD--------APMFVVG 221 (389)
Q Consensus 155 ~inGk~I~v~~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps-----~D--------~pt~V~G 221 (389)
.+.+....-+. +.+.-+|. ++|+||.|+|.-.+.+.++. ++.|+ +||+..+ ++ .|..+++
T Consensus 85 ~l~~~~~~~~~--~~~~~~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe 157 (381)
T PLN02968 85 HLITQDLPNLV--AVKDADFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPE 157 (381)
T ss_pred cccCcccccee--cCCHHHhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcc
Confidence 01111111111 11222353 79999999999888888887 57775 5675554 23 5788888
Q ss_pred cCccC-CC---------CCCCeEecCChhhhhhHHHHHHHHhhcCc--eEEeeecccccCC
Q 016451 222 VNEKT-YK---------PNMNIVSNASCTTNCLAPLAKVVHEEFGI--LEGLMTTVHATTA 270 (389)
Q Consensus 222 VN~~~-y~---------~~~~IISnaSCTTncLAPvlkvL~d~fGI--~~g~mTTVHA~T~ 270 (389)
+|.+. |. ...++|+||+|.|+++...|++|+++++| ++..+++++++|+
T Consensus 158 ~~~~~~yglpE~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSG 218 (381)
T PLN02968 158 LQKEAVYGLTELQREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSG 218 (381)
T ss_pred cchhhhcccchhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccc
Confidence 88774 42 23579999999999999999999999999 7899999999998
No 38
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.42 E-value=1.1e-13 Score=133.62 Aligned_cols=219 Identities=18% Similarity=0.230 Sum_probs=140.6
Q ss_pred eEE-Eec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 91 KVG-ING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 91 kVg-ING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
|+| |.| +|.+|+.++-.|.++|.|+|........+.-.- |.+ -|+|+.+.-. --.-..+.|.. -+
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~-ya~-----a~~wkqt~~l------p~~~~e~~V~e-c~ 71 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKR-YAF-----AGNWKQTDLL------PESAHEYTVEE-CT 71 (361)
T ss_pred cccceeeccchhHHHHHHHhccCCcceeeeecccccccCCc-eEe-----cccchhcccc------cchhhhhhHhh-cC
Confidence 456 999 999999999999999988864442210000000 111 1222221111 00012333422 23
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC-----CCCCeEEeecCccCCCC-C----------CC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP-N----------MN 232 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps-----~D~pt~V~GVN~~~y~~-~----------~~ 232 (389)
++.| . ++|+||...+.....|.-+.+.++|. +|+|+.+ .++|++|+.||.+.+|. . --
T Consensus 72 ~~~F--~--ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~ 145 (361)
T KOG4777|consen 72 ADSF--N--ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGA 145 (361)
T ss_pred hhhc--c--cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCce
Confidence 4443 2 89999999999888888888889998 8999886 25999999999998874 1 24
Q ss_pred eEecCChhhhhhHHHHHHHHhhc-CceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCCCCCHHHHHH
Q 016451 233 IVSNASCTTNCLAPLAKVVHEEF-GILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKGASYEDVKA 311 (389)
Q Consensus 233 IISnaSCTTncLAPvlkvL~d~f-GI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak~~~~e~In~ 311 (389)
||.|++|+|..+...+|+||++| .|++-.++|+||+++.--- |. --.-....||+|-.-|-....-.|.-+-
T Consensus 146 iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~a---pg----v~~vdildnilp~iggee~k~ewet~ki 218 (361)
T KOG4777|consen 146 IIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAA---PG----VELVDILDNILPGIGGEENKFEWETAKI 218 (361)
T ss_pred EEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcC---CC----chHHHHHHhhcCCCCccchhhhHHHHHh
Confidence 99999999998888899999999 5889999999999885221 11 0112245699998766544332222222
Q ss_pred HHHHhhcCCCCcccCccccceEeccCC
Q 016451 312 AIKYASEGSLKGILGYTDEDVVSNDFV 338 (389)
Q Consensus 312 ~~k~as~g~lkgil~yte~~~VS~Df~ 338 (389)
++..++ +..+ .+|+||..||.-.+
T Consensus 219 L~s~n~--~i~~-~~l~ee~~vsaqcn 242 (361)
T KOG4777|consen 219 LFSHNA--PILD-NGLNEEEMVSAQCN 242 (361)
T ss_pred hhccCC--cccc-ccccHHHhhhhhcc
Confidence 222221 2222 36678888887655
No 39
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.42 E-value=7.6e-13 Score=132.71 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=113.3
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
+||||.| +|.+|+.++|.|.+++.++++++-+...... ..+ ...|+.+.+. . ...+ ...+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sag---k~~--~~~~~~l~~~----------~---~~~~-~~~~ 61 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAG---KPV--SEVHPHLRGL----------V---DLNL-EPID 61 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcC---CCh--HHhCcccccc----------C---Ccee-ecCC
Confidence 5899999 7999999999999999999987633210000 000 0112111110 0 0111 1112
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC----C--------------------CCCeEEeecCc
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS----A--------------------DAPMFVVGVNE 224 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps----~--------------------D~pt~V~GVN~ 224 (389)
+++ |.+ ++|+||.|++...+.+.+...+++|+ +||+..+ . +.|..++++|.
T Consensus 62 ~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~ 136 (346)
T TIGR01850 62 EEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHR 136 (346)
T ss_pred HHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCH
Confidence 222 322 68999999999999999999888885 6775553 2 37789999998
Q ss_pred cCCCCCCCeEecCChhhhhhHHHHHHHHhhcCce--EEeeecccccCCC
Q 016451 225 KTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGIL--EGLMTTVHATTAT 271 (389)
Q Consensus 225 ~~y~~~~~IISnaSCTTncLAPvlkvL~d~fGI~--~g~mTTVHA~T~t 271 (389)
+.+.. .++|+||+|.++++...|++|++++.|+ +..++|++++|+.
T Consensus 137 ~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGa 184 (346)
T TIGR01850 137 EEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGA 184 (346)
T ss_pred HHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECccc
Confidence 88864 6799999999999999999999999887 7999999999984
No 40
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.42 E-value=5.3e-13 Score=132.01 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=113.6
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHH--HhhhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKY--MAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~--layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
++||||.|+|+||+..+..+.+.++++++++-|+ |++. +.+--+ ||. .... ++.. .+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi--d~es~gla~A~~----~Gi---~~~~--------~~ie-~L--- 62 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI--DPESDGLARARR----LGV---ATSA--------EGID-GL--- 62 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC--ChhhHHHHHHHH----cCC---Cccc--------CCHH-HH---
Confidence 6899999999999998888887778999999984 5542 222111 221 0001 1100 00
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc-CCCCCCCeEEeecCccCCCC--CCCeEecCChhhhh
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS-APSADAPMFVVGVNEKTYKP--NMNIVSNASCTTNC 243 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS-aps~D~pt~V~GVN~~~y~~--~~~IISnaSCTTnc 243 (389)
.++.+|. ++|+||+|||.....+.++..+++|+ .||. .|..+.|++|++||.+.... +.++|+|++|+|+.
T Consensus 63 --L~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~ 136 (302)
T PRK08300 63 --LAMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIP 136 (302)
T ss_pred --HhCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHH
Confidence 0122454 68999999999999999999999997 5564 44557999999999888754 45899999999999
Q ss_pred hHHHHHHHHhhcCceEEeeecccccC
Q 016451 244 LAPLAKVVHEEFGILEGLMTTVHATT 269 (389)
Q Consensus 244 LAPvlkvL~d~fGI~~g~mTTVHA~T 269 (389)
++..++.+++. ++.+.. +||.+.+
T Consensus 137 ~v~Al~~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 137 IVAAVSRVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred HHHHhcccCcC-ceeeee-eeehhhc
Confidence 99999998765 888877 8998887
No 41
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.23 E-value=3.2e-11 Score=119.85 Aligned_cols=137 Identities=16% Similarity=0.153 Sum_probs=107.9
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
.||+|.| .|-.|..++|.|..+|+++++.+..-. . | ...+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~---~--------------~----------------------~~~~ 42 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR---R--------------K----------------------DAAE 42 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc---c--------------c----------------------CcCC
Confidence 4899999 999999999999999999998886410 0 0 0001
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC-----CCCCeEEeecCccCCC--CCCCeEecCChhh
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYK--PNMNIVSNASCTT 241 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps-----~D~pt~V~GVN~~~y~--~~~~IISnaSCTT 241 (389)
++++ + .++|+||.|++...+++.++...++|+ +||+..+ .+.|..++++|.+..+ ...++|+||.|.+
T Consensus 43 ~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~a 117 (310)
T TIGR01851 43 RAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCYP 117 (310)
T ss_pred HhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCHH
Confidence 1111 1 168999999999999999998888888 6786654 2589999999865433 2468999999999
Q ss_pred hhhHHHHHHHHhhcCceEEeeecccccCC
Q 016451 242 NCLAPLAKVVHEEFGILEGLMTTVHATTA 270 (389)
Q Consensus 242 ncLAPvlkvL~d~fGI~~g~mTTVHA~T~ 270 (389)
+++...|++|+++..|++...+++++.|+
T Consensus 118 Ta~~LaL~PL~~~~li~~~~~~~~~a~SG 146 (310)
T TIGR01851 118 TGFIALMRPLVEAGILPADFPITINAVSG 146 (310)
T ss_pred HHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 99999999999987776666799999986
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.21 E-value=6.5e-11 Score=116.47 Aligned_cols=151 Identities=21% Similarity=0.197 Sum_probs=111.9
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHH--HhhhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKY--MAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~--layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
++||||+|.|+||+..+..+++.+++++++|-|+ +++. +..--+ ||. ...+++...-+
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~--d~es~~la~A~~----~Gi-----------~~~~~~~e~ll--- 60 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGI--DPESDGLARARE----LGV-----------KTSAEGVDGLL--- 60 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeC--CcccHHHHHHHH----CCC-----------CEEECCHHHHh---
Confidence 3799999999999988777777778999999985 4432 221111 221 11111111001
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCCCCeEEeecCccCCCC--CCCeEecCChhhhhh
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKP--NMNIVSNASCTTNCL 244 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D~pt~V~GVN~~~y~~--~~~IISnaSCTTncL 244 (389)
. +.++|+|++||+.....+.+...+++|+ .||.-.|..+.|++|+.||.+.... +.++|+++.|.|+.+
T Consensus 61 ~--------~~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~ 131 (285)
T TIGR03215 61 A--------NPDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPI 131 (285)
T ss_pred c--------CCCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHH
Confidence 0 1268999999999999999999999996 3444566667999999999888764 468999999999999
Q ss_pred HHHHHHHHhhcCceEEeeecccccCC
Q 016451 245 APLAKVVHEEFGILEGLMTTVHATTA 270 (389)
Q Consensus 245 APvlkvL~d~fGI~~g~mTTVHA~T~ 270 (389)
+..++.+++...+ .+++||++.+.
T Consensus 132 ~~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 132 VAAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHHhhccccE--EEEEEEEeecc
Confidence 9999999988866 46788998875
No 43
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.63 E-value=2.7e-08 Score=85.15 Aligned_cols=111 Identities=28% Similarity=0.284 Sum_probs=75.7
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCC-CHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFI-DAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~-~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
||||.| +|.+|+.++|.|.+.++++++.+-.... .-..+... |+.+.+ ...+.+.. .+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~------~~~~~~-------------~~~~~~~~-~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEV------FPHPKG-------------FEDLSVED-AD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHT------TGGGTT-------------TEEEBEEE-TS
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehh------cccccc-------------ccceeEee-cc
Confidence 799999 9999999999999999999988865311 01112122 221111 11222322 22
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCC-----CCCeEEeecCccCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVNEKTY 227 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~-----D~pt~V~GVN~~~y 227 (389)
+..+ .++|+||.|++...+.+.++..++.|+ .||+..+. +.|+++++||.+.+
T Consensus 61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i 118 (121)
T PF01118_consen 61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQI 118 (121)
T ss_dssp GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHH
T ss_pred hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHH
Confidence 2222 289999999999999999999999999 68876652 48999999998765
No 44
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.07 E-value=7.1e-05 Score=75.71 Aligned_cols=141 Identities=20% Similarity=0.242 Sum_probs=92.6
Q ss_pred cceeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCE-EEEEEe
Q 016451 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGK-LIKVFS 165 (389)
Q Consensus 88 m~ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk-~I~v~~ 165 (389)
|++||+|.| .|-.|-.++|.|..++++|+..+... ++ .|+--+++ .....|- ..++ +
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~----~~----------~g~~~~~~------~p~l~g~~~l~~-~ 59 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSR----ER----------AGKPVSDV------HPNLRGLVDLPF-Q 59 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeech----hh----------cCCchHHh------Cccccccccccc-c
Confidence 568999999 99999999999999999996555431 10 11100000 0001110 0111 2
Q ss_pred cCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCC----C-------------C----CeEEeec--
Q 016451 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA----D-------------A----PMFVVGV-- 222 (389)
Q Consensus 166 ~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~----D-------------~----pt~V~GV-- 222 (389)
.-+++.+ ...++|+||-|+.--.+++.++..++.|+| ||..+.+ | . .--|||.
T Consensus 60 ~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpE 135 (349)
T COG0002 60 TIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPE 135 (349)
T ss_pred cCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcc
Confidence 2234444 233689999999999999999999999995 7754431 0 0 2456654
Q ss_pred -CccCCCCCCCeEecCChhhhhhHHHHHHHHhh
Q 016451 223 -NEKTYKPNMNIVSNASCTTNCLAPLAKVVHEE 254 (389)
Q Consensus 223 -N~~~y~~~~~IISnaSCTTncLAPvlkvL~d~ 254 (389)
|.+++. .-+.|+||.|-.+|....++||-+.
T Consensus 136 l~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 136 LHREKIR-GAKLIANPGCYPTAAILALAPLVKA 167 (349)
T ss_pred cCHHHHh-cCCEeeCCCchHHHHHHHHHHHHHc
Confidence 333343 3589999999999999999999866
No 45
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.94 E-value=1.9e-05 Score=77.35 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=87.3
Q ss_pred cceeEEEeccChhHHHHHHHHHcC--CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEe
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS 165 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r--~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~ 165 (389)
|.+||||.|+|.||+.|.+.+... +.+++++|++. +++....+. + . ..+
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~--~~~~~~~~~-----------------~-------~-~~~-- 51 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN--AADLPPALA-----------------G-------R-VAL-- 51 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC--CHHHHHHhh-----------------c-------c-Ccc--
Confidence 678999999999999999998764 34899999985 332211111 0 0 111
Q ss_pred cCCCCCC-CCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCC-CCCCCeEEeecCccCCCCCCCeEecCChhhhh
Q 016451 166 KRDPAEI-PWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP-SADAPMFVVGVNEKTYKPNMNIVSNASCTTNC 243 (389)
Q Consensus 166 ~~dp~~i-~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISap-s~D~pt~V~GVN~~~y~~~~~IISnaSCTTnc 243 (389)
..+++++ .| .+|+|+||.|.-.-+|++++.|++|+.-+|+|-. -+|. .|--.+-. .......-|--+|-..-.
T Consensus 52 ~~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~-~~~~~l~~-~A~~~g~~i~ipSGAigG 126 (267)
T PRK13301 52 LDGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADD-ALRARLIA-AAEAGGARIRVPAGAIAG 126 (267)
T ss_pred cCCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCH-HHHHHHHH-HHHhCCCEEEEeChHHHh
Confidence 2345553 45 5899999999999999999999999988888744 2331 11000000 000011222234433333
Q ss_pred hHHHHHHHHhhcCceEEeeeccccc
Q 016451 244 LAPLAKVVHEEFGILEGLMTTVHAT 268 (389)
Q Consensus 244 LAPvlkvL~d~fGI~~g~mTTVHA~ 268 (389)
|--+ +.. ...|+.++.+||.-..
T Consensus 127 lD~l-~aa-~~~~~~~v~~~t~K~P 149 (267)
T PRK13301 127 LDYL-QAV-AGRDDAEVVYESRKPV 149 (267)
T ss_pred HHHH-HHh-hccCceEEEEEEecCh
Confidence 3222 222 3478999988877544
No 46
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.81 E-value=3.9e-05 Score=65.21 Aligned_cols=111 Identities=25% Similarity=0.250 Sum_probs=67.8
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
||||.| .|++|+.+++.+.+.+++++++|-+. +. .....++ ..|++.. + + +. .+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~--~~-~~~~~~~--~~~~~~~--------------~--~-~~--~~~ 56 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAAS--AR-SAGKRVS--EAGPHLK--------------G--E-VV--LEL 56 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEec--hh-hcCcCHH--HHCcccc--------------c--c-cc--ccc
Confidence 689999 79999999999999888999999441 11 0000000 0111100 0 0 00 112
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHH---HHHHCCCCEEEEcCCC-----CCCCeEEeecCccCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKAS---AHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTY 227 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~---~hl~aGaKkVIISaps-----~D~pt~V~GVN~~~y 227 (389)
+...|...++|+||-|++.-...+... ..++.|+ +||...+ .|.|.++++||.+.+
T Consensus 57 ~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 57 EPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred ccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 222344458899999999887766433 2334555 8885543 258999999997754
No 47
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.77 E-value=6.7e-05 Score=72.91 Aligned_cols=92 Identities=23% Similarity=0.285 Sum_probs=61.6
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
|||||.|+|+||+.+++.+.+.+++++++|-+.....+.....+ +. + +.++ .+.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----------------~~------~--~~~~--~d~ 55 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----------------GE------A--VRVV--SSV 55 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----------------cc------C--Ceee--CCH
Confidence 69999999999999999998887899988865311111111000 00 1 2222 234
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISap 211 (389)
+++ +..+|+|+|||+.-...+.+...+++|.. |++-.|
T Consensus 56 ~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~ 93 (265)
T PRK13303 56 DAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAVISV 93 (265)
T ss_pred HHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeCh
Confidence 444 23689999999998888999999999964 454333
No 48
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.60 E-value=0.00019 Score=72.27 Aligned_cols=90 Identities=22% Similarity=0.265 Sum_probs=63.0
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
++||||.|+|+||+.+++++..+++++||+|-|. -+++.+. + . .+ ++...+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr-~~~~~~~---~--~-~~----------------------v~~~~d 53 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSR-RGAETLD---T--E-TP----------------------VYAVAD 53 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcC-CcHHHHh---h--c-CC----------------------ccccCC
Confidence 5899999999999999999998889999999874 2223221 0 0 00 111011
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISap 211 (389)
... +. ..+|+|+-|++.....+.+...+++|. .||-|.+
T Consensus 54 ~~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~-NVV~s~~ 92 (324)
T TIGR01921 54 DEK--HL-DDVDVLILCMGSATDIPEQAPYFAQFA-NTVDSFD 92 (324)
T ss_pred HHH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCC-CEEECCC
Confidence 111 11 368999999999999999999999997 3555543
No 49
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.47 E-value=0.00037 Score=70.19 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=30.6
Q ss_pred cceeEEEeccChhHHHHHHHHHcCC---------CCcEEEEeCC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVNDP 122 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~---------~~~iVaINd~ 122 (389)
|++||||.|+|.||+.+++.+.++. +++||+|-|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 7799999999999999999987652 6899999773
No 50
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.38 E-value=0.00027 Score=68.85 Aligned_cols=95 Identities=20% Similarity=0.343 Sum_probs=61.6
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
|||+|+| +|++|+.+++.+.+.++++||++-|. .+++.. .+|- +.+.+. .-.| +.++ .+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~-~~~~~~----~~~~--~~~~~~---------~~~g--v~~~--~d 61 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFER-HGSSLQ----GTDA--GELAGI---------GKVG--VPVT--DD 61 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec-CCcccc----CCCH--HHhcCc---------CcCC--ceee--CC
Confidence 7999999 89999999999998889999999873 122111 0110 100000 0001 2222 23
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
++++ ...+|+|||+|......+.+...++.|.. ||+
T Consensus 62 ~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 62 LEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred HHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 4333 13589999999988888889999999864 555
No 51
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.26 E-value=0.00077 Score=65.06 Aligned_cols=92 Identities=29% Similarity=0.357 Sum_probs=65.5
Q ss_pred eeEEEeccChhHHHHHHHHHcC-CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r-~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
++|||+|+|+||..+++.+.+. -+|+++++-| .+.+..-.+.+ + +.++.. .+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D--~~~ek~~~~~~--~------------------~~~~~~-----s~ 53 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYD--RDEEKAKELEA--S------------------VGRRCV-----SD 53 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEec--CCHHHHHHHHh--h------------------cCCCcc-----cc
Confidence 4899999999999999988764 3699999988 35555444432 1 111110 01
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISap 211 (389)
.+++ -..+|+++||.+.---++...+.|++|..-+|+|-.
T Consensus 54 ide~---~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVG 93 (255)
T COG1712 54 IDEL---IAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVG 93 (255)
T ss_pred HHHH---hhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEech
Confidence 1111 137899999999888888999999999988888755
No 52
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.21 E-value=0.001 Score=65.04 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=59.1
Q ss_pred ceeEEEeccChhHHHHHHHHHcC-CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r-~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
++||||+|+|+||+.+++.+... ++++|++|-|+ +++...-+.+ -||. . .. ..
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr--~~~~a~~~a~---~~g~---~----------------~~--~~ 59 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR--DPQRHADFIW---GLRR---P----------------PP--VV 59 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC--CHHHHHHHHH---hcCC---C----------------cc--cC
Confidence 58999999999999999999873 67999999885 4443321111 0110 0 00 01
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
+++++-. .+|+|++|++...-.+.+...+++|.
T Consensus 60 ~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk 92 (271)
T PRK13302 60 PLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGK 92 (271)
T ss_pred CHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCC
Confidence 2333322 47999999999888888888999885
No 53
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.14 E-value=0.0011 Score=64.46 Aligned_cols=89 Identities=24% Similarity=0.319 Sum_probs=61.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCC-CCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~-~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
|||||+|+|+||+.+++.+.+.+ ++++++|-|+ +++....+.+ .+| . .++ .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~a~---~~~-----------------~---~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR--NLEKAENLAS---KTG-----------------A---KAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHHHH---hcC-----------------C---eeE--CC
Confidence 69999999999999999988764 6999999885 4544333221 000 0 111 23
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
.+++. .++|+|++|++...-.+.+...+++|.. |++.
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv~ 91 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VIIM 91 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEEE
Confidence 33333 2689999999988888888888888854 4443
No 54
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.08 E-value=0.00096 Score=64.55 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=58.2
Q ss_pred eeEEEecc-ChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGINGF-GRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgINGf-GrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
|||+|+|. |+||+.+++.+.+.++++||++-|. +++..... + . ..+.+ ..+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~--~~~~~~~~----------------~-~-------~~i~~--~~d 53 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDR--PGSPLVGQ----------------G-A-------LGVAI--TDD 53 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec--CCcccccc----------------C-C-------CCccc--cCC
Confidence 69999996 9999999999988778999999884 22211000 0 0 00111 122
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
.+++- . ++|+|+|+|......+.+...+++|.. ||+
T Consensus 54 l~~ll-~--~~DvVid~t~p~~~~~~~~~al~~G~~-vvi 89 (257)
T PRK00048 54 LEAVL-A--DADVLIDFTTPEATLENLEFALEHGKP-LVI 89 (257)
T ss_pred HHHhc-c--CCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 32221 1 589999999877778888899999874 444
No 55
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.01 E-value=0.00047 Score=69.47 Aligned_cols=35 Identities=40% Similarity=0.633 Sum_probs=29.7
Q ss_pred cceeEEEeccChhHHHHHHHHHcC--------C-CCcEEEEeCC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFR--------D-DVDVVAVNDP 122 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r--------~-~~~iVaINd~ 122 (389)
|++||+|.|||.||+.++|.+.++ + +++|++|.|.
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds 44 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDT 44 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 679999999999999999998763 1 4789999873
No 56
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0027 Score=62.39 Aligned_cols=102 Identities=20% Similarity=0.214 Sum_probs=64.2
Q ss_pred cceeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 88 m~ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
|+|||+|+| .||+||.++|++.+.++++|++.=+.. +. ...|+-.++.-. ++-..+.++.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~-~~----------~~~g~d~ge~~g-------~~~~gv~v~~- 61 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRP-GS----------LSLGSDAGELAG-------LGLLGVPVTD- 61 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecC-Cc----------cccccchhhhcc-------ccccCceeec-
Confidence 358999999 699999999999999999999886631 11 111211111100 0111122221
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps 212 (389)
+ +.-.....|++||-|-.-.+.+.++..++.|.+-||=|...
T Consensus 62 -~---~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf 103 (266)
T COG0289 62 -D---LLLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGF 103 (266)
T ss_pred -c---hhhcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCC
Confidence 1 11223468999999988888899988888886544435443
No 57
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.87 E-value=0.0012 Score=57.16 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=30.8
Q ss_pred eeEEEecc-ChhHHHHHHHHHcCCCCcEEEEeCC
Q 016451 90 TKVGINGF-GRIGRLVLRVAAFRDDVDVVAVNDP 122 (389)
Q Consensus 90 ikVgINGf-GrIGr~vlR~l~~r~~~~iVaINd~ 122 (389)
|||+|+|+ ||+||.+.+.+.++++++|+++-+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~ 34 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDR 34 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEec
Confidence 69999997 9999999999999889999999875
No 58
>PRK11579 putative oxidoreductase; Provisional
Probab=96.80 E-value=0.0049 Score=61.51 Aligned_cols=93 Identities=24% Similarity=0.381 Sum_probs=63.8
Q ss_pred ceeEEEeccChhHHH-HHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 89 NTKVGINGFGRIGRL-VLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 89 ~ikVgINGfGrIGr~-vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
++||||+|+|.||+. .++++...++++|+||-|+ +++...- + | .. ++++ .
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~--~~~~~~~--~----~---~~----------------~~~~--~ 54 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS--DATKVKA--D----W---PT----------------VTVV--S 54 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC--CHHHHHh--h----C---CC----------------Ccee--C
Confidence 589999999999985 5677777778999999995 4543320 1 1 00 0111 1
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps 212 (389)
+.+++ ..+.++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 55 ~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (346)
T PRK11579 55 EPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKPF 97 (346)
T ss_pred CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCCC
Confidence 22221 11236899999999999999999999998 567776663
No 59
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.79 E-value=0.0028 Score=63.88 Aligned_cols=33 Identities=36% Similarity=0.666 Sum_probs=28.3
Q ss_pred eeEEEeccChhHHHHHHHHHcC-------CCCcEEEEeCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFR-------DDVDVVAVNDP 122 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r-------~~~~iVaINd~ 122 (389)
|||+|.|||.||+.++|.|.++ .+++||+|-|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 4899999999999999998874 35889999774
No 60
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.77 E-value=0.0021 Score=66.72 Aligned_cols=93 Identities=26% Similarity=0.349 Sum_probs=56.1
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC---------CCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCE
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGK 159 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~---------~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk 159 (389)
++||||.|+|.||+.+++.+.++. +++|++|-+. +++.. .-+ . ..+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~--~~~~~-~~~-------------~--------~~~- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR--DLEKD-RGV-------------D--------LPG- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC--Chhhc-cCC-------------C--------Ccc-
Confidence 589999999999999999886542 5889999774 22211 000 0 000
Q ss_pred EEEEEecCCCCCCCCCccCccEEEeccCCC-CCHHHHHHHHHCCCCEEEEcCC
Q 016451 160 LIKVFSKRDPAEIPWGDYGVDYVVESSGVF-TTIAKASAHMKGGAKKVVISAP 211 (389)
Q Consensus 160 ~I~v~~~~dp~~i~W~~~gvD~VvEsTG~f-~t~e~a~~hl~aGaKkVIISap 211 (389)
..++ .+++++ ..+..+|+|+||||.. ...+.....+++|. .||..++
T Consensus 58 -~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 58 -ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred -ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 0111 122222 1234789999999864 33567778888884 4443344
No 61
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.67 E-value=0.0025 Score=64.78 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=28.5
Q ss_pred cceeEEEeccChhHHHHHHHHHcCC---------CCcEEEEeC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVND 121 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~---------~~~iVaINd 121 (389)
|+++|+|.|||.||+.+++.|.++. ++.|++|-+
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~ 43 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLG 43 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEe
Confidence 5689999999999999999987542 477888865
No 62
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.59 E-value=0.028 Score=53.86 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=31.1
Q ss_pred CcceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCC
Q 016451 87 DGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (389)
Q Consensus 87 ~m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~ 122 (389)
.+.+||+|-|||.||+.+++.|.+.+ ..||+|.|.
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g-~~vv~v~D~ 63 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAG-AKVVAVSDS 63 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Confidence 45679999999999999999998875 999999984
No 63
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.57 E-value=0.0037 Score=52.09 Aligned_cols=94 Identities=31% Similarity=0.385 Sum_probs=66.4
Q ss_pred eeEEEeccChhHHHHHHHHHcC-CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r-~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
|||||+|+|.+|+..++.+... +++++++|-|+ +++......+ .|| -. .+ . +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~--~~~~~~~~~~---~~~---~~-~~-~-----------------~ 53 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP--DPERAEAFAE---KYG---IP-VY-T-----------------D 53 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS--SHHHHHHHHH---HTT---SE-EE-S-----------------S
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC--CHHHHHHHHH---Hhc---cc-ch-h-----------------H
Confidence 6999999999999999999887 78999999996 5544322211 111 01 11 1 1
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps 212 (389)
.+++ +.+.++|+|+-||....-.+.+...+++|. .|++--|.
T Consensus 54 ~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 54 LEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp HHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 1111 122378999999999998999999999998 67777774
No 64
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.57 E-value=0.0055 Score=60.89 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=81.5
Q ss_pred CcceeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEe
Q 016451 87 DGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS 165 (389)
Q Consensus 87 ~m~ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~ 165 (389)
.|.+||.||| .||+|+.+.+++.. ++|+||+.-|+....+ +-.+.+.|..+.++.
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~-----------------------~~~~~~~g~~v~~~~ 64 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGV-----------------------GVTVEVCGVEVRLVG 64 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccc-----------------------cccceeccceeeeec
Confidence 4568999999 99999999999999 7899999877521000 011233444566652
Q ss_pred cCCCCCCC--CCccCcc-EEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCCCCeEEeecCccCCCCCCCeE--ecCChh
Q 016451 166 KRDPAEIP--WGDYGVD-YVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIV--SNASCT 240 (389)
Q Consensus 166 ~~dp~~i~--W~~~gvD-~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D~pt~V~GVN~~~y~~~~~II--SnaSCT 240 (389)
..|.++.- -.+..+| ++||-|-.-...+..+..++.|..-||=|....+. ......-...-.++ .|-|=-
T Consensus 65 ~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e-----~l~~~~~~~~i~vv~apNfSiG 139 (286)
T PLN02775 65 PSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRD-----RLLKDVEESGVYAVIAPQMGKQ 139 (286)
T ss_pred CccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHH-----HHHHHHhcCCccEEEECcccHH
Confidence 22322211 0111478 89998877777777888888887654444433211 00000001122333 455556
Q ss_pred hhhhHHHHHHHHhhcC
Q 016451 241 TNCLAPLAKVVHEEFG 256 (389)
Q Consensus 241 TncLAPvlkvL~d~fG 256 (389)
.|-|--+++..-+.|+
T Consensus 140 v~ll~~l~~~aA~~l~ 155 (286)
T PLN02775 140 VVAFQAAMEIMAEQFP 155 (286)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6666666666666654
No 65
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.06 E-value=0.016 Score=58.84 Aligned_cols=35 Identities=40% Similarity=0.628 Sum_probs=29.4
Q ss_pred cceeEEEeccChhHHHHHHHHHcCC---------CCcEEEEeCC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVNDP 122 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~---------~~~iVaINd~ 122 (389)
|++||+|.|||.||+.++|.+.++. ++++++|-+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 5799999999999999999998752 4778888763
No 66
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=96.00 E-value=0.14 Score=53.96 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=65.8
Q ss_pred eeEEEec-cChhHHHHHHHHHcCC-CCcEEEEeCCCCCHHHHhhhhc-ccccccccCceEEEecCC---eeE--ECCE--
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDS---TLE--INGK-- 159 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~-~~~iVaINd~~~~~~~layLlk-yDSthGkf~~~v~~~~~~---~L~--inGk-- 159 (389)
.||+|.| +|-||...++++.+.+ +|+++++.- ..+.+.++.+.+ |.. .-+.+.++. .|. +.|.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaa-g~Ni~lL~~q~~~f~p------~~v~v~d~~~~~~l~~~l~~~~~ 130 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAA-GSNVTLLADQVRKFKP------KLVAVRNESLVDELKEALADLDD 130 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEEC-CCCHHHHHHHHHHhCC------CEEEEcCHHHHHHHHHhhcCCCC
Confidence 5999999 8999999999998764 599999865 346666655332 221 112221100 000 0110
Q ss_pred EEEEEecC-CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 160 LIKVFSKR-DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 160 ~I~v~~~~-dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
.++++... +..++ -....+|+|+.+.+.+...+..-..+++| |+|.+
T Consensus 131 ~~~vl~G~egl~~l-a~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VAL 178 (454)
T PLN02696 131 KPEIIPGEEGIVEV-ARHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 178 (454)
T ss_pred CcEEEECHHHHHHH-HcCCCCCEEEEeCccccchHHHHHHHHCC-CcEEE
Confidence 12333311 11111 01126899999999998888878889999 56655
No 67
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.96 E-value=0.082 Score=50.33 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=30.5
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~ 122 (389)
+..||+|-|||.+|+.+++.|.+.+ ..+|+|.|.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G-~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG-GKVLAVSDP 55 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEEcC
Confidence 4579999999999999999999885 889999985
No 68
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.84 E-value=0.034 Score=57.47 Aligned_cols=110 Identities=21% Similarity=0.266 Sum_probs=66.3
Q ss_pred eeEEEec-cChhHHHHHHHHHcCC-CCcEEEEeCCCCCHHHHhhhhc-ccccccccCceEEEecCC---eeE--ECCEEE
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDS---TLE--INGKLI 161 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~-~~~iVaINd~~~~~~~layLlk-yDSthGkf~~~v~~~~~~---~L~--inGk~I 161 (389)
.||+|.| +|-||+..++++...+ .|+|+++.- ..+.+.+.-+.+ |.. .-+-+.++. .|. +.+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa-~~n~~~l~~q~~~f~p------~~v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSA-GKNVELLAEQAREFRP------KYVVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEc-CCCHHHHHHHHHHhCC------CEEEEcCHHHHHHHHHhhccCCc
Confidence 4899999 9999999999987654 699999962 135555544443 221 112221100 010 112123
Q ss_pred EEEecCC-CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 162 KVFSKRD-PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 162 ~v~~~~d-p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
+++...+ ..++ -...++|+|+.+++.+...+..-..+++| |+|.+
T Consensus 75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL 120 (385)
T PRK05447 75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL 120 (385)
T ss_pred eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence 3433222 1111 11226899999999999998888899999 45555
No 69
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.74 E-value=0.0079 Score=50.77 Aligned_cols=83 Identities=29% Similarity=0.356 Sum_probs=47.9
Q ss_pred ccChhHHHHHHHHHcCC---CCcEEEEeCCC--CCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 96 GFGRIGRLVLRVAAFRD---DVDVVAVNDPF--IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 96 GfGrIGr~vlR~l~~r~---~~~iVaINd~~--~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
|||.||+.+++.+.++. +++|++|-+.. .+.+....+ . + .... .+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~----------~-------~-~~~~----------~~~~ 52 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF----------P-------D-EAFT----------TDLE 52 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH----------T-------H-SCEE----------SSHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc----------c-------c-cccc----------CCHH
Confidence 89999999999999875 69999997741 001100000 0 0 0000 1111
Q ss_pred C-CCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcC
Q 016451 171 E-IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (389)
Q Consensus 171 ~-i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISa 210 (389)
+ +.| ..+|+|||||+.-...+.....|+.|. -||++
T Consensus 53 ~~~~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 53 ELIDD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp HHHTH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred HHhcC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 1 111 168999999998777777888888887 45554
No 70
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.40 E-value=0.071 Score=56.14 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=61.7
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCC--------CCCHHHHhhhhcccccc-cccCceEEEecCCeeEECCE
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP--------FIDAKYMAYMFKYDSTH-GVFKGTINVVDDSTLEINGK 159 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~--------~~~~~~layLlkyDSth-Gkf~~~v~~~~~~~L~inGk 159 (389)
..||+|-|||.||+.+++.|.+.+ ..||+|.|. ..|++.+ ++|--.+ |...+ +.+. .+.+
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~G-akVVavsDs~G~iyn~~GLD~~~L---~~~k~~~~~~l~~---~~~~----~~~~ 300 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLG-AKVVTCSDSSGYVYDEEGIDLEKL---KEIKEVRRGRISE---YAEE----FGAE 300 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHHH---HHHHHhcCCchhh---hhhh----cCCe
Confidence 469999999999999999999876 999999882 1244433 3322111 22111 0000 0001
Q ss_pred EEEEEecCCCCCCCCCccCccEEEecc-CCCCCHHHHHHHHHCCCCEEEE
Q 016451 160 LIKVFSKRDPAEIPWGDYGVDYVVESS-GVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 160 ~I~v~~~~dp~~i~W~~~gvD~VvEsT-G~f~t~e~a~~hl~aGaKkVII 208 (389)
. + ++++ .| ...+|+.+.|+ +.-.+.+.+..+.+.+|| +|+
T Consensus 301 ~--i----~~~~-i~-~~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 301 Y--L----EGGS-PW-SVPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred e--c----CCcc-cc-ccCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 1 1 2222 25 35799999997 566677888888877884 445
No 71
>PRK10206 putative oxidoreductase; Provisional
Probab=95.36 E-value=0.036 Score=55.71 Aligned_cols=95 Identities=23% Similarity=0.238 Sum_probs=61.4
Q ss_pred ceeEEEeccChhHH-HHHHHHHcC-CCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 89 NTKVGINGFGRIGR-LVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 89 ~ikVgINGfGrIGr-~vlR~l~~r-~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
++||||.|+|+|++ ..++.+... ++++|+||-|+ +++-....-+| | + ++++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~--~~~~~~~~~~~----~-----------------~--~~~~-- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRR--HAKPEEQAPIY----S-----------------H--IHFT-- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcC--ChhHHHHHHhc----C-----------------C--Cccc--
Confidence 37999999999885 346766543 57999999995 33322111111 1 0 0111
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps 212 (389)
.+.+++ ..+.++|.|+-||....-.+.+...+++| |.|++--|-
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPF 97 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecCC
Confidence 111111 12337899999999999999999999999 567776663
No 72
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.73 E-value=0.14 Score=49.94 Aligned_cols=96 Identities=25% Similarity=0.295 Sum_probs=64.2
Q ss_pred cceeEEEeccChhHH-HHHHHHHcCCC-CcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEe
Q 016451 88 GNTKVGINGFGRIGR-LVLRVAAFRDD-VDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS 165 (389)
Q Consensus 88 m~ikVgINGfGrIGr-~vlR~l~~r~~-~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~ 165 (389)
|++||||+|.|.|+. ..++++.+.++ +++|+|-|+ +++....+.+ .||.- . .+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~--~~~~a~~~a~---~~~~~----~---------------~~- 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR--DPERAEAFAE---EFGIA----K---------------AY- 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC--CHHHHHHHHH---HcCCC----c---------------cc-
Confidence 468999999997775 57888887766 799999885 5655433322 11110 0 00
Q ss_pred cCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCC
Q 016451 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (389)
Q Consensus 166 ~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISap 211 (389)
.+.+++ ..+..+|+|+=||....-.+.+.+.|++|. .|++--|
T Consensus 57 -~~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 57 -TDLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred -CCHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 011111 011258999999999999999999999997 5666666
No 73
>PLN02700 homoserine dehydrogenase family protein
Probab=94.67 E-value=0.052 Score=55.97 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=27.7
Q ss_pred cceeEEEeccChhHHHHHHHHHcCC--------CCcEEEEeC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRD--------DVDVVAVND 121 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~--------~~~iVaINd 121 (389)
|+++|+|.|+|.||+.+++.+.++. ++.|++|.+
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~ 43 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCD 43 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEEC
Confidence 4689999999999999999876532 367888866
No 74
>PLN02477 glutamate dehydrogenase
Probab=94.58 E-value=0.32 Score=50.78 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=29.9
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~ 122 (389)
-.+|+|-|||.||+.+++.|.+.+ ..||||.|.
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~G-akVVaVsD~ 238 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKG-GKIVAVSDI 238 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CEEEEEECC
Confidence 368999999999999999998886 899999885
No 75
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.55 E-value=0.053 Score=55.67 Aligned_cols=93 Identities=27% Similarity=0.352 Sum_probs=56.4
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCe---eEECCEEEEEEe
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDST---LEINGKLIKVFS 165 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~---L~inGk~I~v~~ 165 (389)
++|||++|-|..|+-++-.+..-+.|++|||.|...+....+ ||..++.-...++.++-.+ -.-.| +|.++.
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A----~~~ag~~~~~~~e~~~~s~~a~Ai~aG-Ki~vT~ 91 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRA----YDRAGGPKIEAVEADDASKMADAIEAG-KIAVTD 91 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHH----HHHhcCCcccccccchhhHHHHHHhcC-cEEEec
Confidence 589999999999998877776667799999999766655554 4555554332232211000 00112 233422
Q ss_pred cCCCCCCCCCccCccEEEeccCCC
Q 016451 166 KRDPAEIPWGDYGVDYVVESSGVF 189 (389)
Q Consensus 166 ~~dp~~i~W~~~gvD~VvEsTG~f 189 (389)
|.+ +-.....+|+|||+||.-
T Consensus 92 --D~~-~i~~~~~IdvIIdATG~p 112 (438)
T COG4091 92 --DAE-LIIANDLIDVIIDATGVP 112 (438)
T ss_pred --chh-hhhcCCcceEEEEcCCCc
Confidence 222 223334799999999964
No 76
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.44 E-value=0.082 Score=50.36 Aligned_cols=99 Identities=24% Similarity=0.230 Sum_probs=61.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhc--ccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK--YDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlk--yDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
|++.|+|.||+|+.++|.|.+++ .++++|-+ |.+....-++ +|. . -+..++....+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~---d~~~~~~~~~~~~~~-------~-------~v~gd~t~~~~---- 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDR---DEERVEEFLADELDT-------H-------VVIGDATDEDV---- 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEc---CHHHHHHHhhhhcce-------E-------EEEecCCCHHH----
Confidence 48999999999999999999986 68888854 5555443232 221 0 11112211111
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHH-HHHHHHH-CCCCEEEEcCCCC
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIA-KASAHMK-GGAKKVVISAPSA 213 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e-~a~~hl~-aGaKkVIISaps~ 213 (389)
..+..- ..+|+|+=+||.....- -+..+++ -|.++||..+.++
T Consensus 59 -L~~agi--~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 59 -LEEAGI--DDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -HHhcCC--CcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 122222 26899999999854443 3344444 6999988876653
No 77
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=94.40 E-value=0.047 Score=61.39 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=28.6
Q ss_pred CcceeEEEeccChhHHHHHHHHHcCC--------CCcEEEEeC
Q 016451 87 DGNTKVGINGFGRIGRLVLRVAAFRD--------DVDVVAVND 121 (389)
Q Consensus 87 ~m~ikVgINGfGrIGr~vlR~l~~r~--------~~~iVaINd 121 (389)
.+.++|+|.|||.||+.+++.|.++. ++.|++|-+
T Consensus 463 ~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~ 505 (819)
T PRK09436 463 DQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIAN 505 (819)
T ss_pred cccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEc
Confidence 36789999999999999999987542 467888864
No 78
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=94.36 E-value=0.081 Score=52.47 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=58.4
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe-CCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec-
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN-DPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK- 166 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN-d~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~- 166 (389)
+||.||| .|++||.+.+++.. ++|+||+.. |+ .. . +++...+.|..|.+...
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~----~~--------------~------~~~~~~~~g~~v~v~~~~ 55 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGG----EE--------------E------AENEAEVAGKEILLHGPS 55 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccc----cc--------------c------ccchhhhcccceeeeccc
Confidence 5899999 99999999999888 689999862 21 00 0 00112233334555211
Q ss_pred ---CCCCCCCCCccCcc-EEEeccCCCCCHHHHHHHHHCCCCEEEEcCC
Q 016451 167 ---RDPAEIPWGDYGVD-YVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (389)
Q Consensus 167 ---~dp~~i~W~~~gvD-~VvEsTG~f~t~e~a~~hl~aGaKkVIISap 211 (389)
.++..+. +...| ++||-|-.....+.++..++.|..-||=|..
T Consensus 56 ~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG 102 (275)
T TIGR02130 56 EREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPFVMGTTG 102 (275)
T ss_pred cccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCEEEcCCC
Confidence 1222221 12267 9999888777778888888888754433433
No 79
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.18 E-value=0.22 Score=48.81 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=63.4
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCC--------CCCHHHHhhhhcccccccc-cCceEEEecCCeeEECCE
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP--------FIDAKYMAYMFKYDSTHGV-FKGTINVVDDSTLEINGK 159 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~--------~~~~~~layLlkyDSthGk-f~~~v~~~~~~~L~inGk 159 (389)
-.||+|-|||.||+.+++.|.+.+ ..||+|.|. ..|++.+..|++|+..++. ... +. ..+.+-
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~G-akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~---~~----~~~~~a 109 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLELG-AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSE---YA----KKYGTA 109 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHH---Hh----hcCCCC
Confidence 369999999999999999999886 899999772 2355666556655542221 000 00 001110
Q ss_pred EEEEEecCCCCCCCCCccCccEEEec-cCCCCCHHHHHHHHHCCCCEEEE
Q 016451 160 LIKVFSKRDPAEIPWGDYGVDYVVES-SGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 160 ~I~v~~~~dp~~i~W~~~gvD~VvEs-TG~f~t~e~a~~hl~aGaKkVII 208 (389)
-.+ +++++ | ...+|+.+=| ++.-.+.+.+..-.+.+|| +|+
T Consensus 110 -~~~----~~~~~-~-~~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~ 151 (254)
T cd05313 110 -KYF----EGKKP-W-EVPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVA 151 (254)
T ss_pred -EEe----CCcch-h-cCCCcEEEeccccccCCHHHHHHHHHcCCE-EEE
Confidence 011 22222 5 3578988877 4666777777766566774 445
No 80
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.15 E-value=0.061 Score=49.02 Aligned_cols=31 Identities=39% Similarity=0.597 Sum_probs=27.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|||.|||+||+.+.+.+..-+ ++|.+.+-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~ 67 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFG-MRVIGYDR 67 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred CEEEEEEEcCCcCeEeeeeecCC-ceeEEecc
Confidence 48999999999999999999876 89888875
No 81
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=93.61 E-value=0.54 Score=46.44 Aligned_cols=239 Identities=22% Similarity=0.252 Sum_probs=118.5
Q ss_pred ceeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHh-hhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMA-YMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 89 ~ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~la-yLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
.+|||..| -|--|+.+.|.+...|.+++..+..- .++ --|+ +-|+ .++..+ .|...+ +.-.
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssr-----el~Gqkl~-~ytk----~eiqy~---~lst~D--~~kl-- 81 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSR-----ELAGQKLE-VYTK----LEIQYA---DLSTVD--AVKL-- 81 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehh-----hhcCCccc-Ccch----hheeec---ccchhh--HHHh--
Confidence 48999999 89999999999999999997666531 110 0000 1000 011110 111111 0000
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC---CC--eEEeec---Ccc-CCCCCCCeEecC
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD---AP--MFVVGV---NEK-TYKPNMNIVSNA 237 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D---~p--t~V~GV---N~~-~y~~~~~IISna 237 (389)
.+| .-+|..+.+-..-.-+.....-...--|-+||. -++| .| -.+||. |+. ++. +.+.|+||
T Consensus 82 ee~-------~avd~wvmaLPn~vckpfv~~~~s~~gks~iid-lsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNP 152 (340)
T KOG4354|consen 82 EEP-------HAVDHWVMALPNQVCKPFVSLTESSDGKSRIID-LSADWRFQPHKEWVYGLPELNDREDIK-NARLIANP 152 (340)
T ss_pred hcC-------CceeeeeeecchhhHHHHHHHHhhcCCceeeee-cchhhcCCcchheeecCcccccHHHHh-hhhhccCC
Confidence 111 134555555544333333332222334555663 3333 45 677775 422 222 35789999
Q ss_pred Chhhh----hhHHHHHHHHhhcCceEEeeecccccCCCcccccCCCCCCCCCCcccccccccCCCCCCC-----------
Q 016451 238 SCTTN----CLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK----------- 302 (389)
Q Consensus 238 SCTTn----cLAPvlkvL~d~fGI~~g~mTTVHA~T~tQ~lvD~p~~kd~R~~Raaa~NIIPtsTGaak----------- 302 (389)
.|-.+ .|.|++|.++-.-.| + .+--|++. --+|+ +.-.-.-.+.|+||..-.--.
T Consensus 153 GCYaTgsQl~l~Pllk~i~g~p~i---f--gvSGySGA---Gtkps--pkNd~~~l~nnlipY~ltdHiHerEIs~r~k~ 222 (340)
T KOG4354|consen 153 GCYATGSQLPLVPLLKAILGKPEI---F--GVSGYSGA---GTKPS--PKNDYSELANNLIPYGLTDHIHEREISQRSKV 222 (340)
T ss_pred CcccccCcccchHHHHHhcCCcce---e--eeccccCC---CCCCC--CccCHHHHhcCCccccccccchhHhHHHhhCC
Confidence 99544 367888887532211 1 11123331 11232 222333467777775422111
Q ss_pred -------------------------CCCHHHHHHHHHHhhcC-CCCcccCccccceEeccCCCCCcceEEeCCCcccccC
Q 016451 303 -------------------------GASYEDVKAAIKYASEG-SLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSA 356 (389)
Q Consensus 303 -------------------------~~~~e~In~~~k~as~g-~lkgil~yte~~~VS~Df~g~~~Ssi~D~~~t~~~~~ 356 (389)
.++.||+.+..|.--|+ +|--++ .|-|+| -|..|.-|-.+ - .-.--..+
T Consensus 223 ~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~--ddvPlv-kdv~gsh~v~~-g-gF~~~~~g 297 (340)
T KOG4354|consen 223 TVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVL--DDVPLV-KDVRGSHYVHM-G-GFPDRIPG 297 (340)
T ss_pred ceeechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeee--ccccce-eccCCcceeEe-c-cccCCCCC
Confidence 68889999998876544 344443 223554 34455443322 1 11112223
Q ss_pred CeEEEEEEeCCC
Q 016451 357 SFMKLVSWYDNE 368 (389)
Q Consensus 357 ~~vKl~~WYDNE 368 (389)
+.+-+++=-||-
T Consensus 298 ~Ravii~tIDNL 309 (340)
T KOG4354|consen 298 DRAVIISTIDNL 309 (340)
T ss_pred ceEEEEEehhhh
Confidence 446677777774
No 82
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=93.61 E-value=0.053 Score=60.92 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=28.3
Q ss_pred cceeEEEeccChhHHHHHHHHHcCC---------CCcEEEEeC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVND 121 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~---------~~~iVaINd 121 (389)
+.++|+|.|||.||+.++|.|.++. ++.|++|-+
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 5689999999999999999987641 477888854
No 83
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=93.15 E-value=0.44 Score=50.40 Aligned_cols=102 Identities=17% Similarity=0.258 Sum_probs=65.1
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCC--------CCHHHHhhhhcccccc-cccCceEEEecCCeeEECCE
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPF--------IDAKYMAYMFKYDSTH-GVFKGTINVVDDSTLEINGK 159 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~--------~~~~~layLlkyDSth-Gkf~~~v~~~~~~~L~inGk 159 (389)
-.+|+|-|||.+|..+++.|.+.+ ..||+|.|.. .|.+.+.++++|-..+ |+...-.. . ..|-
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~G-akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~------~-~~~a 308 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQLG-AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAK------H-SSTA 308 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhh------c-cCCc
Confidence 358999999999999999999886 8999999853 2366666666543211 22111000 0 0010
Q ss_pred EEEEEecCCCCCCCCCccCccEEEec-cCCCCCHHHHHHHHHCCCCE
Q 016451 160 LIKVFSKRDPAEIPWGDYGVDYVVES-SGVFTTIAKASAHMKGGAKK 205 (389)
Q Consensus 160 ~I~v~~~~dp~~i~W~~~gvD~VvEs-TG~f~t~e~a~~hl~aGaKk 205 (389)
+.. ++ +=.|. ..+|+.+=| ++.-++.+.|..-++.|||-
T Consensus 309 --~~~---~~-~~~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~ 348 (454)
T PTZ00079 309 --KYV---PG-KKPWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKL 348 (454)
T ss_pred --EEe---CC-cCccc-CCccEEEeccccccCCHHHHHHHHHcCCeE
Confidence 111 11 22475 579999877 56777888888777889953
No 84
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.62 E-value=0.54 Score=43.97 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=26.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
++|+|.|||++|+.+.+.|.+.+ .+|+ +.|
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D 58 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG-AKLI-VAD 58 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEc
Confidence 58999999999999999999886 7888 555
No 85
>PLN00016 RNA-binding protein; Provisional
Probab=92.51 E-value=0.39 Score=48.32 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=29.3
Q ss_pred CCcceeEEEe----c-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 86 SDGNTKVGIN----G-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 86 ~~m~ikVgIN----G-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
..|+.||.|. | +|.||+.+++.|.+++ .+|.++..
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R 88 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTR 88 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEec
Confidence 3456799999 8 9999999999999886 78877764
No 86
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=92.47 E-value=0.3 Score=45.85 Aligned_cols=95 Identities=20% Similarity=0.301 Sum_probs=59.7
Q ss_pred eeEEEeccChhHHHHHHHHH-cCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGINGFGRIGRLVLRVAA-FRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~-~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
.||+|.|.|.+|+.+++.+. ....++++++=|. +++.. |+ .++|.++ ....+
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~~----------~~-------------~i~g~~v--~~~~~ 137 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEKI----------GT-------------KIGGIPV--YHIDE 137 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--Chhhc----------CC-------------EeCCeEE--cCHHH
Confidence 58999999999999988643 3346999998763 22211 00 1123222 11122
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps 212 (389)
..++ ..+.++|+|+.|++.....+....-+++|.+.|+.-.|-
T Consensus 138 l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~ 180 (213)
T PRK05472 138 LEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPV 180 (213)
T ss_pred HHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCce
Confidence 2222 133479999999998776666777778998776554563
No 87
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.43 E-value=0.6 Score=45.07 Aligned_cols=133 Identities=23% Similarity=0.345 Sum_probs=78.3
Q ss_pred ceeEEEeccChhHHHHHHHHHcC-CCCc---EEEEeCCCCCHHHHhhhhc--ccccccccCceEEEecCCeeEECCEEEE
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFR-DDVD---VVAVNDPFIDAKYMAYMFK--YDSTHGVFKGTINVVDDSTLEINGKLIK 162 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r-~~~~---iVaINd~~~~~~~layLlk--yDSthGkf~~~v~~~~~~~L~inGk~I~ 162 (389)
+.||+|.|.|.||--++--++.. .-+| .|+| ||.. +-++...+ -.+|| |+ + .|
T Consensus 4 k~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgi-dp~s--dglaraarlgv~tt~---------eg---v--~~---- 62 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGI-DPQS--DGLARAARLGVATTH---------EG---V--IG---- 62 (310)
T ss_pred cceEEEEccCcccHHHHHHHHhcCCcccceeEEcc-CCCc--cHHHHHHhcCCcchh---------hH---H--HH----
Confidence 57999999999998655444444 2244 3445 3422 22332221 22222 11 0 01
Q ss_pred EEecCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCCCCeEEeecCccCCCC--CCCeEecCChh
Q 016451 163 VFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKP--NMNIVSNASCT 240 (389)
Q Consensus 163 v~~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D~pt~V~GVN~~~y~~--~~~IISnaSCT 240 (389)
+. +-|+ + .++|+|||+|......+.|.+..++|.+-+=+ .|.+=-|-+|+-||-+.-.. +-+.|.+ -
T Consensus 63 ll--~~p~---~--~di~lvfdatsa~~h~~~a~~~ae~gi~~idl-tpaaigp~vvp~~n~~eh~~a~nvnmvtc---g 131 (310)
T COG4569 63 LL--NMPE---F--ADIDLVFDATSAGAHVKNAAALAEAGIRLIDL-TPAAIGPYVVPVVNLEEHVDALNVNMVTC---G 131 (310)
T ss_pred HH--hCCC---C--CCcceEEeccccchhhcchHhHHhcCCceeec-chhccCCeeccccchHHhcCCCCcceEee---c
Confidence 11 1121 2 26789999999999999999999999965333 34444689999999877433 3445554 4
Q ss_pred hhhhHHHHHHHHh
Q 016451 241 TNCLAPLAKVVHE 253 (389)
Q Consensus 241 TncLAPvlkvL~d 253 (389)
..+-.|++....+
T Consensus 132 gqatipiv~avsr 144 (310)
T COG4569 132 GQATIPIVAAVSR 144 (310)
T ss_pred Ccccchhhhhhhh
Confidence 4455566555544
No 88
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.41 E-value=0.19 Score=47.71 Aligned_cols=94 Identities=23% Similarity=0.328 Sum_probs=64.1
Q ss_pred eeEEEeccChhHHHHHHHHHc-CCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAF-RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~-r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
.+|.|+|.|++||.++.--+. +.+|.|+++=| ++++.+ |+.-+.+. |..-.+
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FD--v~~~~V----------G~~~~~v~---------------V~~~d~ 137 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFD--VDPDKV----------GTKIGDVP---------------VYDLDD 137 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEec--CCHHHh----------CcccCCee---------------eechHH
Confidence 699999999999998876554 45799999988 355522 44333332 322122
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISap 211 (389)
.+++ -.+.++|+++-|...-...+-|..-+++|.|.++==+|
T Consensus 138 le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 138 LEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred HHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccc
Confidence 2211 12348999999999888888888889999987543345
No 89
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.10 E-value=1.3 Score=43.76 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=27.6
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|++||+|.|.|.||..+...|.+.+ .+|..++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG-ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC-CcEEEEec
Confidence 5679999999999999999998876 66666653
No 90
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.93 E-value=0.49 Score=46.31 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=27.2
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEc
Confidence 4899999 9999999999999886 78888754
No 91
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=91.72 E-value=0.19 Score=50.17 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=25.9
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
-.+|||.|||+|||.+.|.+..-+ ++|.+.+
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fg-m~V~~~d 175 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFG-AKVVYYS 175 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcC-CEEEEEC
Confidence 358999999999999999987665 7777664
No 92
>PRK14030 glutamate dehydrogenase; Provisional
Probab=91.47 E-value=1.3 Score=46.83 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=64.4
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCC--------CCCHHHHhhhhcccccccccCceEEEecCCeeEECCEE
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP--------FIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL 160 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~--------~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~ 160 (389)
-.+|+|-|||.+|..+++.|.+.+ ..||+|.|. ..|.+.+.+|++|-..+|..-... . . .+.|-+
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~G-akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~-~-~----~~~ga~ 300 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATELG-AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPY-A-E----KFPGST 300 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHH-H-h----cCCCCE
Confidence 469999999999999999998876 899996442 345666777777644333210000 0 0 111211
Q ss_pred EEEEecCCCCCCCCCccCccEEEec-cCCCCCHHHHHHHHHCCCC
Q 016451 161 IKVFSKRDPAEIPWGDYGVDYVVES-SGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 161 I~v~~~~dp~~i~W~~~gvD~VvEs-TG~f~t~e~a~~hl~aGaK 204 (389)
.+ ++++ .|. ..+|+.+=| ++.-++.+.|..-.+.+||
T Consensus 301 -~i----~~~~-~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak 338 (445)
T PRK14030 301 -FF----AGKK-PWE-QKVDIALPCATQNELNGEDADKLIKNGVL 338 (445)
T ss_pred -Ec----CCcc-cee-ccccEEeeccccccCCHHHHHHHHHcCCe
Confidence 11 1222 263 578988876 5777888888877777885
No 93
>PRK06487 glycerate dehydrogenase; Provisional
Probab=91.40 E-value=0.21 Score=49.93 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=26.1
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|||.|||+|||.+.|.+..-+ ++|++.+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fg-m~V~~~~~ 179 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFG-MRVLIGQL 179 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC-CEEEEECC
Confidence 48999999999999999997765 78777653
No 94
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=91.23 E-value=0.16 Score=51.29 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=54.7
Q ss_pred EEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCCC
Q 016451 92 VGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAE 171 (389)
Q Consensus 92 VgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~~ 171 (389)
|.|.|.|+||+.+++.|.++.+++-|.|-| .+.+.+..+.+. .. ...++. +.+ ...|++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~--r~~~~~~~~~~~--~~---~~~~~~------------~~~-d~~~~~~ 60 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVAD--RNPEKAERLAEK--LL---GDRVEA------------VQV-DVNDPES 60 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEE--SSHHHHHHHHT----T---TTTEEE------------EE---TTTHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEE--CCHHHHHHHHhh--cc---ccceeE------------EEE-ecCCHHH
Confidence 689999999999999999987663344545 366665555431 00 001111 111 1122222
Q ss_pred CCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 172 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 172 i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
+.=--.+.|+||.|.|.|....-++..++.|+ -.++
T Consensus 61 l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD 96 (386)
T PF03435_consen 61 LAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVD 96 (386)
T ss_dssp HHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEE
T ss_pred HHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceec
Confidence 11001267999999999988888889999998 4555
No 95
>PRK06932 glycerate dehydrogenase; Provisional
Probab=90.82 E-value=0.26 Score=49.27 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=25.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|||.|||+|||.+.|.+..-+ ++|++.+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg-~~V~~~~ 177 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALG-MKVLYAE 177 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCC-CEEEEEC
Confidence 58999999999999999987665 7776654
No 96
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=90.74 E-value=0.96 Score=43.02 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=28.1
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|||||.| .|++|..+++-+..|+ -+++||--
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEe
Confidence 5899999 9999999999999997 78889854
No 97
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=90.08 E-value=0.34 Score=44.92 Aligned_cols=95 Identities=24% Similarity=0.182 Sum_probs=54.5
Q ss_pred EEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 92 VgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
|.|.| +|.+|+.++++|... .++|.++-.. .....+.-|+.. | ..-++.+ ..+++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~~~V~~l~R~--~~~~~~~~l~~~---g----~~vv~~d--------------~~~~~ 56 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-GFSVRALVRD--PSSDRAQQLQAL---G----AEVVEAD--------------YDDPE 56 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TGCEEEEESS--SHHHHHHHHHHT---T----TEEEES---------------TT-HH
T ss_pred CEEECCccHHHHHHHHHHHhC-CCCcEEEEec--cchhhhhhhhcc---c----ceEeecc--------------cCCHH
Confidence 68999 999999999999995 5998886542 122333333311 1 1011110 11222
Q ss_pred CCCCCccCccEEEeccCCCCC-H-----HHHHHHHHCCCCEEEEcC
Q 016451 171 EIPWGDYGVDYVVESSGVFTT-I-----AKASAHMKGGAKKVVISA 210 (389)
Q Consensus 171 ~i~W~~~gvD~VvEsTG~f~t-~-----e~a~~hl~aGaKkVIISa 210 (389)
.+.=.=.|+|.||.+++.... . .-..+..++|+|++|.|.
T Consensus 57 ~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 57 SLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 221001289999999997632 2 233455678999988754
No 98
>PLN02928 oxidoreductase family protein
Probab=90.07 E-value=0.33 Score=49.26 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=27.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|||.|||+||+.+.+.+...+ ++|++.+.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG-~~V~~~dr 190 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFG-VKLLATRR 190 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC-CEEEEECC
Confidence 58999999999999999998776 88888764
No 99
>PLN02712 arogenate dehydrogenase
Probab=90.00 E-value=0.44 Score=52.59 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=44.1
Q ss_pred CCcccccccccccCcccccccCCccccCCCCCcceeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 56 SSSLQTCAAKGIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
++....+....-||........ +.....+++||||+|+|+||+.+.+.+...+ .+|++++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G-~~V~~~dr 400 (667)
T PLN02712 340 SSLDMMRFQGVAQKYEYNAQVS----GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQG-HTVLAYSR 400 (667)
T ss_pred hhhhhhhhhcccCCCCccchhh----hccCCCCCCEEEEEecCHHHHHHHHHHHHCc-CEEEEEEC
Confidence 4555566666778887764322 2223345679999999999999999998775 78888875
No 100
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=89.90 E-value=0.36 Score=48.80 Aligned_cols=30 Identities=37% Similarity=0.573 Sum_probs=25.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|||.|||+||+.+.+.+..-+ |+|.+.+
T Consensus 143 kTvGIiG~G~IG~~va~~l~afg-m~v~~~d 172 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFG-MKVIGYD 172 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEC
Confidence 48999999999999999988776 8877764
No 101
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=89.87 E-value=0.45 Score=42.60 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=29.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMF 133 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLl 133 (389)
+|||+.|+|++|+.+.+.|...+ ++|.+-|- +++.+.-+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g-~~v~~~d~---~~~~~~~~~ 41 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG-YEVTVYDR---SPEKAEALA 41 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT-TEEEEEES---SHHHHHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcC-CeEEeecc---chhhhhhhH
Confidence 59999999999999999999876 88776652 455544443
No 102
>PRK07574 formate dehydrogenase; Provisional
Probab=89.72 E-value=0.36 Score=49.90 Aligned_cols=31 Identities=42% Similarity=0.471 Sum_probs=26.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|||.|+|+||+.++|.|...+ ++|.+.+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG-~~V~~~dr 223 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFD-VKLHYTDR 223 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEECC
Confidence 47999999999999999998765 78777753
No 103
>PRK06436 glycerate dehydrogenase; Provisional
Probab=89.53 E-value=0.4 Score=47.92 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=26.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|||.|+|+||+.+.|.+...+ ++|++.+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG-~~V~~~~r 153 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFG-MNIYAYTR 153 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEECC
Confidence 58999999999999999876655 88877764
No 104
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.33 E-value=0.3 Score=43.02 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=27.4
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+||+|.|.||+|..+.++|.+.+ ++|++|-.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~s 41 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG-HEVVGVYS 41 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT-SEEEEESS
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC-CeEEEEEe
Confidence 479999999999999999999886 89988854
No 105
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=89.22 E-value=0.43 Score=48.00 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=23.7
Q ss_pred eeEEEeccChhHHHHHHHHH-cCCCCcEEEE
Q 016451 90 TKVGINGFGRIGRLVLRVAA-FRDDVDVVAV 119 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~-~r~~~~iVaI 119 (389)
.+|||.|||+|||.+.|.+. .-+ ++|++.
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fg-m~V~~~ 175 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFN-MPILYN 175 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCC-CEEEEE
Confidence 58999999999999999886 554 776644
No 106
>PRK14031 glutamate dehydrogenase; Provisional
Probab=89.16 E-value=1.5 Score=46.42 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=61.8
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCC--------CCCHHHHhhhhccccc-ccccCceEEEecCCeeEECCE
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP--------FIDAKYMAYMFKYDST-HGVFKGTINVVDDSTLEINGK 159 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~--------~~~~~~layLlkyDSt-hGkf~~~v~~~~~~~L~inGk 159 (389)
-.||+|-|||.+|...++.|.+.+ -.||+|.|. .+|++.+.|+.+|... +|+... +.+ . . |
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~G-AkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~---~~~--~--~-g- 297 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELG-GKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIRE---YAE--K--Y-G- 297 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhh---hHh--h--c-C-
Confidence 359999999999999999999886 899999881 1356656555443221 111110 000 0 0 1
Q ss_pred EEEEEecCCCCCCCCCccCccEEEecc-CCCCCHHHHHHHHHCCCCEEEE
Q 016451 160 LIKVFSKRDPAEIPWGDYGVDYVVESS-GVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 160 ~I~v~~~~dp~~i~W~~~gvD~VvEsT-G~f~t~e~a~~hl~aGaKkVII 208 (389)
.... ++++ +|. ..+|+.+=|. +.-++.+.|.+-...|+ ++|+
T Consensus 298 -a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~-~~V~ 340 (444)
T PRK14031 298 -CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGV-IAVS 340 (444)
T ss_pred -CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCC-eEEE
Confidence 1111 1222 364 5789888774 55577788876656677 2344
No 107
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.15 E-value=0.43 Score=49.57 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=25.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|||.|+|+||+.+++.+...+ ++|++.+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fG-m~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLG-MRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEC
Confidence 47999999999999999998775 7877664
No 108
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.12 E-value=0.44 Score=48.04 Aligned_cols=30 Identities=37% Similarity=0.548 Sum_probs=25.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|||.|+|+||+.+.+.+...+ ++|.+.+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G-~~V~~~d 180 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFG-MRILYYS 180 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence 58999999999999999998775 7877664
No 109
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.91 E-value=1.2 Score=43.70 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=24.7
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCC-CcEEEEe
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDD-VDVVAVN 120 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~-~~iVaIN 120 (389)
..||+|.|+|.||+.+.+.+...+. .+|.+++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~d 38 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGAD 38 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3589999999999999999987652 2555453
No 110
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=88.87 E-value=0.43 Score=48.23 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=24.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|||.|+||||+.+.|.+...+ ++|..-+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fg-m~v~y~~ 176 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFG-MKVLYYD 176 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCC-CEEEEEC
Confidence 48999999999999999998554 6655544
No 111
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.76 E-value=0.51 Score=45.85 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=26.7
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|.+||||.|+|++|..+.+.+...+ ++|.+.|
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g-~~v~~~d 32 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAG-YSLVVYD 32 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCC-CeEEEEc
Confidence 5579999999999999999998765 7776654
No 112
>PLN02712 arogenate dehydrogenase
Probab=88.62 E-value=0.74 Score=50.82 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=27.7
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
++||||+|+|+||+.+.+.+.+.+ ++|++++.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G-~~V~~~dr 83 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG-HTVLAHSR 83 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 358999999999999999998876 78888765
No 113
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.47 E-value=2 Score=43.25 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=53.7
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECC-EEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEING-KLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inG-k~I~v~~~~dp 169 (389)
+|.|.|.|.||-+.+..+.-.+--+|+++ |+ +++-+...-++.- ....++. +.... ...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~--~~~Rl~~A~~~~g--------------~~~~~~~~~~~~~---~~~ 230 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR--SPERLELAKEAGG--------------ADVVVNPSEDDAG---AEI 230 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC--CHHHHHHHHHhCC--------------CeEeecCccccHH---HHH
Confidence 79999999999988777766664566666 53 5555544333211 1111221 11000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
.++..+ .|+|+||||+|.....+.+-..++.|-+=+++.
T Consensus 231 ~~~t~g-~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 231 LELTGG-RGADVVIEAVGSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred HHHhCC-CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEe
Confidence 011111 489999999996555556665555444333333
No 114
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.40 E-value=1.6 Score=44.58 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=25.4
Q ss_pred ceeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 89 ~ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
..||+|.| +|.+|+.+.+.+...+ .+|..++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~d 129 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG-YQVRILE 129 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC-CeEEEeC
Confidence 36899999 9999999999998876 6655554
No 115
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=88.31 E-value=0.41 Score=39.41 Aligned_cols=90 Identities=29% Similarity=0.333 Sum_probs=56.5
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEE-ecCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVF-SKRD 168 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~-~~~d 168 (389)
.||+|.|.|+.|+.++...+....+.++++=|. +++.. | -.++| +.++ .-++
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~~~----------G-------------~~i~g--ipV~~~~~~ 56 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPEKI----------G-------------KEIGG--IPVYGSMDE 56 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTTTT----------T-------------SEETT--EEEESSHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCCcc----------C-------------cEECC--EEeeccHHH
Confidence 589999999999988755555445888887662 22211 1 12334 4444 2122
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISa 210 (389)
..+.- ++|+.+-|.+.-...+.+...+++|.|.++.=+
T Consensus 57 l~~~~----~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft 94 (96)
T PF02629_consen 57 LEEFI----EIDIAIITVPAEAAQEVADELVEAGIKGIVNFT 94 (96)
T ss_dssp HHHHC----TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEES
T ss_pred hhhhh----CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 21111 389999999877777788888899999876533
No 116
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=88.30 E-value=1.3 Score=51.41 Aligned_cols=91 Identities=18% Similarity=0.092 Sum_probs=60.7
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCc------------EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEEC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVD------------VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEIN 157 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~------------iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~in 157 (389)
.||+|.|.|+||+.+++.|.+.++++ +|+|.|+ +++....+.+ .+++ +
T Consensus 570 ~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~------~~~~-~----------- 629 (1042)
T PLN02819 570 QNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKETVE------GIEN-A----------- 629 (1042)
T ss_pred CcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHHHHH------hcCC-C-----------
Confidence 48999999999999999998877666 7899985 5554433322 0000 0
Q ss_pred CEEEEEEecCCCCCCC-CCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 158 GKLIKVFSKRDPAEIP-WGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 158 Gk~I~v~~~~dp~~i~-W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
+.+.+ ...|++++. +- .++|+|+-|++.+...+-+...+++|+
T Consensus 630 -~~v~l-Dv~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGk 673 (1042)
T PLN02819 630 -EAVQL-DVSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKK 673 (1042)
T ss_pred -ceEEe-ecCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCC
Confidence 01111 012222221 10 258999999999999999999999997
No 117
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=88.23 E-value=0.57 Score=46.91 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=26.4
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|||.|+|.||+.+.+.+...+ ++|.+.+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG-~~V~~~~~ 167 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWG-FPLRCWSR 167 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 48999999999999999998775 78777753
No 118
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.12 E-value=0.97 Score=44.84 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=26.7
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.-||+|.|+|++|+.+++.|...+ .+|..++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r 183 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG-ANVTVGAR 183 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 358999999999999999998876 67766654
No 119
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=88.07 E-value=1 Score=36.14 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=31.2
Q ss_pred eEEEeccChhHHHHHHHHHcCC--CCcEEEEeCCCCCHHHHhhhh
Q 016451 91 KVGINGFGRIGRLVLRVAAFRD--DVDVVAVNDPFIDAKYMAYMF 133 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~--~~~iVaINd~~~~~~~layLl 133 (389)
||||.|+|++|..+++-+.+.+ .-+|.-+++ .+++...++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~--r~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSS--RSPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEE--SSHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeecc--CcHHHHHHHH
Confidence 7999999999999999998875 245554645 3677776664
No 120
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=87.97 E-value=1.5 Score=41.74 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=25.2
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+|.|.| +|.||+.+++.|.+++ .+|.++.-
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeC
Confidence 478999 9999999999999886 78777653
No 121
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=87.95 E-value=0.61 Score=47.03 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=25.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
++|||.|+|+||+.+.+.+...+ ++|++.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G-~~V~~~d 176 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFG-ATITAYD 176 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEe
Confidence 48999999999999999998775 7877765
No 122
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=87.82 E-value=0.77 Score=44.77 Aligned_cols=103 Identities=16% Similarity=0.082 Sum_probs=57.8
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC----------CCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD----------DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEING 158 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~----------~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inG 158 (389)
+.||.|.|.|-+|-.+++.|...+ .++|+.|-.-.++...+-..+-++..-|+.+.++-.+ .--.+++
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~--ri~~~~~ 88 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVN--RLNQAMG 88 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHH--HHHhccC
Confidence 579999999999999999987531 1344444221234434433333445566665443321 1111224
Q ss_pred EEEEEEecC-CCCCCCCCccCccEEEeccCCCCCHHHHH
Q 016451 159 KLIKVFSKR-DPAEIPWGDYGVDYVVESSGVFTTIAKAS 196 (389)
Q Consensus 159 k~I~v~~~~-dp~~i~W~~~gvD~VvEsTG~f~t~e~a~ 196 (389)
-.++...++ ++.++ + .+.|+||+|+..+.++...-
T Consensus 89 ~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~ 124 (244)
T TIGR03736 89 TDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAIL 124 (244)
T ss_pred ceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHH
Confidence 334443322 22222 2 26899999999988875553
No 123
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=87.81 E-value=0.32 Score=44.82 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=40.1
Q ss_pred HHHHHhh-cCceEEeeecccccCCCc------------ccccCCCCCCCCCCcccccccccCCCC
Q 016451 248 AKVVHEE-FGILEGLMTTVHATTATQ------------KTVDGPSMKDWRGGRGASQNIIPSSTG 299 (389)
Q Consensus 248 lkvL~d~-fGI~~g~mTTVHA~T~tQ------------~lvD~p~~kd~R~~Raaa~NIIPtsTG 299 (389)
|++|+++ ++++++.++|++++|+.= .++.+...++.-..+..++|++|..-+
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~ 65 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGG 65 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSST
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCC
Confidence 6789997 999999999999999932 233332224556778899999999877
No 124
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=87.74 E-value=1.4 Score=37.75 Aligned_cols=83 Identities=24% Similarity=0.217 Sum_probs=54.1
Q ss_pred eEEEec----cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 91 KVGING----FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 91 kVgING----fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
+|+|.| -++.|+.+++.|.+++ ++|..||-- |+. +.|.+ ++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp~------------~~~------------------i~G~~--~y-- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNPK------------GGE------------------ILGIK--CY-- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT--EEEEESTT------------CSE------------------ETTEE---B--
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECCC------------ceE------------------ECcEE--ee--
Confidence 689999 6999999999999976 899999852 121 22321 21
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCC
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISap 211 (389)
.+.+++| ..+|+++-++..-...+..+...+.|+|.|++...
T Consensus 47 ~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 47 PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 1222221 36899999999877777777777889999988544
No 125
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.58 E-value=1.8 Score=45.13 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=61.7
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+||-|.|.|+||+.+++.|..+++.+|. |-| .+++.++.... ++.+ .++ .+.++- .+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAd--Rs~~~~~~i~~--~~~~----~v~-----~~~vD~--------~d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IAD--RSKEKCARIAE--LIGG----KVE-----ALQVDA--------ADV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEE-EEe--CCHHHHHHHHh--hccc----cce-----eEEecc--------cCh
Confidence 5899999999999999999988776654 444 35555554432 2222 111 122221 111
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
+.+.=--.+.|+||.|.+.|.+..-+++.++.|..=|-+|
T Consensus 60 ~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts 99 (389)
T COG1748 60 DALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTS 99 (389)
T ss_pred HHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcc
Confidence 0000000144999999999999999999999998544343
No 126
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.54 E-value=0.64 Score=44.77 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=73.5
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcc-cccccccCceEEEecCCeeEECC-EEEEEEec
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKY-DSTHGVFKGTINVVDDSTLEING-KLIKVFSK 166 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlky-DSthGkf~~~v~~~~~~~L~inG-k~I~v~~~ 166 (389)
..||.|.|.|-+|..+++.|...+==+|+-|.+-..++..+-..+-+ .++-|+.+-++..+ .-..+|- -+|....+
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~--~l~~inP~~~V~~~~~ 88 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAE--RIRDINPECEVDAVEE 88 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHH--HHHHHCCCcEEEEeee
Confidence 45899999999999999999876511233332212333333333222 34556544332110 0011221 11222211
Q ss_pred C-CCCCC-CCCccCccEEEeccCCCCCHHHHHHHH-HCCCCEEEEcCCCCCCCeEEeecCccCCCCCCCeEecCChhhhh
Q 016451 167 R-DPAEI-PWGDYGVDYVVESSGVFTTIAKASAHM-KGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNC 243 (389)
Q Consensus 167 ~-dp~~i-~W~~~gvD~VvEsTG~f~t~e~a~~hl-~aGaKkVIISaps~D~pt~V~GVN~~~y~~~~~IISnaSCTTnc 243 (389)
. +++++ .+-..+.|+||+|+..+..+...-... +.+ .|.|..+-...++|+..=-|+.-+.|.+|
T Consensus 89 ~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~------------ip~I~s~g~g~~~dp~~i~i~di~~t~~~ 156 (231)
T cd00755 89 FLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK------------IPVISSMGAGGKLDPTRIRVADISKTSGD 156 (231)
T ss_pred ecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC------------CCEEEEeCCcCCCCCCeEEEccEeccccC
Confidence 1 11111 111235899999999875543322221 223 23333233334555543345555667775
Q ss_pred hHHHHHHHHh---hcCce
Q 016451 244 LAPLAKVVHE---EFGIL 258 (389)
Q Consensus 244 LAPvlkvL~d---~fGI~ 258 (389)
|+++.+.. +-||.
T Consensus 157 --pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 157 --PLARKVRKRLRKRGIF 172 (231)
T ss_pred --cHHHHHHHHHHHcCCC
Confidence 66666653 44554
No 127
>PLN02306 hydroxypyruvate reductase
Probab=87.30 E-value=0.67 Score=47.93 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=24.6
Q ss_pred eeEEEeccChhHHHHHHHHH-cCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAA-FRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~-~r~~~~iVaIN 120 (389)
.+|||.|||+||+.+.|.+. .-+ ++|.+.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fG-m~V~~~d 196 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYD 196 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-CEEEEEC
Confidence 58999999999999999875 554 7877664
No 128
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.13 E-value=2.3 Score=46.35 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=33.8
Q ss_pred ccCcccccccCCccccCCCCCcceeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 67 IQPIRATATEIPPTIQKSRSDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~m~ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
..+.+++.....+........+.-.|.|.| .|.||+.+++.|.+++ .+|+++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G-~~Vval~ 111 (576)
T PLN03209 58 SGATKFSSAAIEAIPKELDTKDEDLAFVAGATGKVGSRTVRELLKLG-FRVRAGV 111 (576)
T ss_pred ccchhhhhhhhhccccccccCCCCEEEEECCCCHHHHHHHHHHHHCC-CeEEEEe
Confidence 344444443333333222222333688999 9999999999999886 7777764
No 129
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=86.97 E-value=0.71 Score=47.73 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=25.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|||+|+|+||+.+.+.+..-+ +++.+.+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G-~~V~~~d 146 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALG-IKTLLCD 146 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence 58999999999999999998776 8876654
No 130
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=86.91 E-value=1.9 Score=45.22 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=34.6
Q ss_pred cccccCcccccccCCccccCCCCCcceeEEEec-cChhHHHHHHHHHcCCCCcEEEE
Q 016451 64 AKGIQPIRATATEIPPTIQKSRSDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~m~ikVgING-fGrIGr~vlR~l~~r~~~~iVaI 119 (389)
-+++.|...+-.+...........-+..|-|.| +|++||++.+.|.+|+ |.+-+.
T Consensus 54 ~~~~~~~~~~~~e~~v~~~~~~~~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~ 109 (411)
T KOG1203|consen 54 KTPISPVTGTTSEAEVSPPNNNSKKPTTVLVVGATGKVGRRIVKILLKRG-FSVRAL 109 (411)
T ss_pred cCCCCccccccceeeeccCCCCCCCCCeEEEecCCCchhHHHHHHHHHCC-Ceeeee
Confidence 344555555444442222212222246899999 9999999999999997 665544
No 131
>PLN03139 formate dehydrogenase; Provisional
Probab=86.89 E-value=0.69 Score=47.93 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=25.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|||.|+|+||+.++|.+...+ ++|.+.+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG-~~V~~~d 229 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFN-CNLLYHD 229 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCC-CEEEEEC
Confidence 48999999999999999998764 7776654
No 132
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.64 E-value=1.7 Score=42.80 Aligned_cols=147 Identities=18% Similarity=0.249 Sum_probs=75.4
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcc-----c--ccccccCceEEEecCCeeEECCEEEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKY-----D--STHGVFKGTINVVDDSTLEINGKLIKV 163 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlky-----D--SthGkf~~~v~~~~~~~L~inGk~I~v 163 (389)
||||.|.|.+|+.+...+...+ ++++..+- +++.+....++ | -..|...... . + .. . ..|++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~---~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~--~-~~-~--~~l~~ 75 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAG-VDVLVFET---TEELATAGRNRIEKSLERAVSRGKLTERE-R--D-AA-L--ARLRF 75 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEEEEEC---CHHHHHHHHHHHHHHHHHHHhcccCChhh-H--H-HH-H--hCeEe
Confidence 8999999999999999888775 78666642 55554431110 0 0012211100 0 0 00 0 12233
Q ss_pred EecCCCCCCCCCccCccEEEeccCCCCCHHHH-----HHHH-HCCCCEEEEcCCCC----------CCCeEEeec---Cc
Q 016451 164 FSKRDPAEIPWGDYGVDYVVESSGVFTTIAKA-----SAHM-KGGAKKVVISAPSA----------DAPMFVVGV---NE 224 (389)
Q Consensus 164 ~~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a-----~~hl-~aGaKkVIISaps~----------D~pt~V~GV---N~ 224 (389)
. .+.+.+ .++|+||||...-...+.. +.+. ..++ +|.|+.|. ..|--+.|+ |+
T Consensus 76 ~--~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~~P 147 (286)
T PRK07819 76 T--TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFFNP 147 (286)
T ss_pred e--CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecCCC
Confidence 2 233322 3899999997765444332 2333 3344 77776541 133223333 22
Q ss_pred cCCCCCCCeEecCChhhhhhHHHHHHHHhhcC
Q 016451 225 KTYKPNMNIVSNASCTTNCLAPLAKVVHEEFG 256 (389)
Q Consensus 225 ~~y~~~~~IISnaSCTTncLAPvlkvL~d~fG 256 (389)
-.+.+--.||..+.+.-..++-+...+.+..|
T Consensus 148 ~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lg 179 (286)
T PRK07819 148 VPVLPLVELVPTLVTSEATVARAEEFASDVLG 179 (286)
T ss_pred cccCceEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 11112234666666666666666666555555
No 133
>PLN02256 arogenate dehydrogenase
Probab=86.54 E-value=0.88 Score=45.43 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=28.6
Q ss_pred CcceeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 87 DGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 87 ~m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
..++||+|.|+|.||..+.+.+.+.+ .+|++++.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~ 67 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSR 67 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEEC
Confidence 34579999999999999999998765 78888875
No 134
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.34 E-value=2.6 Score=42.24 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.1
Q ss_pred eeEEEeccChhHHHHHHHHHcCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
.||+|.|-|.||..+...+..++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~ 28 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKN 28 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCC
Confidence 59999999999999988877665
No 135
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=85.64 E-value=2.1 Score=43.64 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=57.2
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC-CCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~-~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
++||||.|. ++|+.-++++.+.+ +++||||-|. +.+...-+-+ .||. + .+ .
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~--~~erA~~~A~---~~gi-~-------------------~y--~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQ--GSERSRALAH---RLGV-P-------------------LY--C 54 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcC--CHHHHHHHHH---HhCC-C-------------------cc--C
Confidence 479999999 68999999998876 7999999995 5543322221 1221 0 00 1
Q ss_pred CCCCCCCCccCccEEEe--ccCCCCCHHHHHHHHHCCCCEEEEcCCC
Q 016451 168 DPAEIPWGDYGVDYVVE--SSGVFTTIAKASAHMKGGAKKVVISAPS 212 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvE--sTG~f~t~e~a~~hl~aGaKkVIISaps 212 (389)
+.+++. .+.++|+|.= ++....-.+.+...+++| |.|++=-|-
T Consensus 55 ~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aG-kHVL~EKPl 99 (343)
T TIGR01761 55 EVEELP-DDIDIACVVVRSAIVGGQGSALARALLARG-IHVLQEHPL 99 (343)
T ss_pred CHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCC-CeEEEcCCC
Confidence 122221 1124454444 223456678899999998 467775663
No 136
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=85.62 E-value=7.4 Score=38.47 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=52.7
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
+|.|.|.|-||...++.+...+ ..++++.-...+++.+. +++ + +|- +. + +-+.-.+. + .
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~~~~~~~~~~-~~~-~--~Ga---~~-v--------~~~~~~~~---~-~ 233 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRG-FEVYVLNRRDPPDPKAD-IVE-E--LGA---TY-V--------NSSKTPVA---E-V 233 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHH-HHH-H--cCC---EE-e--------cCCccchh---h-h
Confidence 7999999999999998888776 57777753111334432 222 0 121 00 1 10000000 0 0
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 171 ~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
. .+ .++|+||||+|.-...+.+-..++.|.+-|++.
T Consensus 234 ~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 234 K-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred h-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEe
Confidence 0 12 278999999996545566666777665333333
No 137
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.15 E-value=0.76 Score=43.92 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.1
Q ss_pred cceeEEEeccChhHHHHHHHHHcCC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
|++||+|.|+|.||..+++.+.+.+
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g 25 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASG 25 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCC
Confidence 5679999999999999999988764
No 138
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=84.73 E-value=1.1 Score=45.61 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=27.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~ 122 (389)
-+|||+|+|+||+.+.+.|...+ ++|++.|++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G-~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSG-VEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCc-CEEEEEECc
Confidence 47999999999999999999876 888777764
No 139
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.60 E-value=1.1 Score=43.45 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=29.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layL 132 (389)
|||+|+|.|.||..+.+.|.+++ ++|.+++- +.+.+..+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~---~~~~~~~a 39 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG-HTVYGVSR---RESTCERA 39 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC-CEEEEEEC---CHHHHHHH
Confidence 38999999999999999998875 77777752 45544443
No 140
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=84.02 E-value=1.1 Score=47.84 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=26.7
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|||.|||+||+.+.+.+...+ ++|.+.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~ 169 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFG-MKVLAYDP 169 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEECC
Confidence 48999999999999999998775 88888753
No 141
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=84.00 E-value=1.2 Score=46.08 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=25.5
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|||+|+|+||+.+.+.+...+ +++++.+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G-~~V~~~D 146 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLG-WKVLVCD 146 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEC
Confidence 57999999999999999998776 7876653
No 142
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.89 E-value=5.3 Score=39.21 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=23.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEE
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaI 119 (389)
+||+|.|.|.+|..++..+...+-.+|+-+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~ 32 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLF 32 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 599999999999999988877651265555
No 143
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=83.35 E-value=1.4 Score=44.28 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=30.7
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|.++|-|.|||.||+..+|.+..++.++||+.=+
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akpe~elvgawv 34 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKPELELVGAWV 34 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCCCCceEEEEe
Confidence 6789999999999999999999998899998744
No 144
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.27 E-value=7.2 Score=37.52 Aligned_cols=30 Identities=37% Similarity=0.361 Sum_probs=24.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|||+|.|.|.+|..+...|.+.+ .+|..+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG-HDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 48999999999999999888765 5655554
No 145
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.11 E-value=1.3 Score=47.43 Aligned_cols=31 Identities=35% Similarity=0.519 Sum_probs=26.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|||.|+|+||+.+.+.+...+ ++|++.+.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~ 171 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFG-MKVIAYDP 171 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEECC
Confidence 57999999999999999998775 88888863
No 146
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=83.02 E-value=2.6 Score=44.09 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=23.9
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaI 119 (389)
+|+|.|+|.||+.+++.+...+ ..++.+
T Consensus 204 tVvViG~G~IG~~va~~ak~~G-a~ViV~ 231 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQG-ARVIVT 231 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 7999999999999999998876 565554
No 147
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=82.81 E-value=10 Score=36.29 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=72.2
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|.|-|.||...++.+...+ .. |+++ +. +.+.+..+-+ +|- + ..++.+.. . ...
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~-~~--~~~r~~~a~~----~Ga---~--------~~i~~~~~---~-~~~ 179 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAG-AARVVAA-DP--SPDRRELALS----FGA---T--------ALAEPEVL---A-ERQ 179 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEE-CC--CHHHHHHHHH----cCC---c--------EecCchhh---H-HHH
Confidence 7899999999999999888776 65 6666 42 3444433222 221 0 11111100 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCCCCeEEeecCccC-CCCCCCeEecCChhhhhhHHHH
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKT-YKPNMNIVSNASCTTNCLAPLA 248 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D~pt~V~GVN~~~-y~~~~~IISnaSCTTncLAPvl 248 (389)
.++. ...++|+||||+|.-...+.+-..++.|.+-|++.......+ ..++... +..+..|+..-..+...+..++
T Consensus 180 ~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~ 255 (280)
T TIGR03366 180 GGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGP---VALDPEQVVRRWLTIRGVHNYEPRHLDQAV 255 (280)
T ss_pred HHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCc---eeeCHHHHHhCCcEEEecCCCCHHHHHHHH
Confidence 0011 113799999999976666667777777664444443321111 1122222 2223456655444445566777
Q ss_pred HHHHh
Q 016451 249 KVVHE 253 (389)
Q Consensus 249 kvL~d 253 (389)
+.|.+
T Consensus 256 ~~l~~ 260 (280)
T TIGR03366 256 RFLAA 260 (280)
T ss_pred HHHHh
Confidence 77765
No 148
>PRK08605 D-lactate dehydrogenase; Validated
Probab=82.47 E-value=1.6 Score=43.96 Aligned_cols=31 Identities=42% Similarity=0.475 Sum_probs=23.7
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
++|||.|+|+||+.+.+.+...-.++|.+.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d 177 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYD 177 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEEC
Confidence 5899999999999999988432136766553
No 149
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.85 E-value=2.2 Score=40.11 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=26.4
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC--CCc-EEEEeC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD--DVD-VVAVND 121 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~--~~~-iVaINd 121 (389)
.+||+|.|.|++|+.+++.+..++ +++ ++..++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 468999999999999999987664 355 666765
No 150
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=81.71 E-value=7 Score=38.10 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=47.1
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
+|.|+|.|-||...++.+...+ ...|.+-|. +.+.+....++ ..+|- .+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~--~~~rl~~a~~~------------------~~i~~--------~~~- 196 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAG-GSPPAVWET--NPRRRDGATGY------------------EVLDP--------EKD- 196 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEeCC--CHHHHHhhhhc------------------cccCh--------hhc-
Confidence 6899999999999999887776 554433342 33333211110 01110 000
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC
Q 016451 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 171 ~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK 204 (389)
...++|+||||+|.-...+.+-..++.|.+
T Consensus 197 ----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~ 226 (308)
T TIGR01202 197 ----PRRDYRAIYDASGDPSLIDTLVRRLAKGGE 226 (308)
T ss_pred ----cCCCCCEEEECCCCHHHHHHHHHhhhcCcE
Confidence 123789999999975555555566665553
No 151
>PLN02688 pyrroline-5-carboxylate reductase
Probab=80.65 E-value=3.3 Score=39.53 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=26.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCC---CcEEEEeCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDD---VDVVAVNDP 122 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~---~~iVaINd~ 122 (389)
|||||.|+|.+|..+++.|.+.+. .+|+..++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 489999999999999999987651 267777553
No 152
>PLN02572 UDP-sulfoquinovose synthase
Probab=80.27 E-value=3.4 Score=43.09 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=31.4
Q ss_pred CccccCCCCCcceeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 78 PPTIQKSRSDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 78 ~~~~~~~~~~m~ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|..++.+...+.+||-|-| .|.||+.++|.|.+++ .+|+++.
T Consensus 36 ~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d 78 (442)
T PLN02572 36 PSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVD 78 (442)
T ss_pred CCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 3333333334446899999 9999999999999886 7888764
No 153
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=80.20 E-value=9.5 Score=37.57 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=50.5
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|.|-||...++.+...+ . .|+++.. +.+.+..+.+ +|- ...++-+.-.+. +.
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~---~~~~~~~a~~----lGa-----------~~vi~~~~~~~~---~~ 229 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLG-AAEIVCADV---SPRSLSLARE----MGA-----------DKLVNPQNDDLD---HY 229 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEeC---CHHHHHHHHH----cCC-----------cEEecCCcccHH---HH
Confidence 7999999999999999888776 5 4555532 3444443332 221 011111100010 00
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK 204 (389)
.. ..+ ++|+||||+|.-.+.+.+-..++.|-+
T Consensus 230 ~~-~~g--~~D~vid~~G~~~~~~~~~~~l~~~G~ 261 (343)
T PRK09880 230 KA-EKG--YFDVSFEVSGHPSSINTCLEVTRAKGV 261 (343)
T ss_pred hc-cCC--CCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 00 112 589999999975455666677776663
No 154
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.82 E-value=2.2 Score=43.72 Aligned_cols=36 Identities=36% Similarity=0.512 Sum_probs=32.6
Q ss_pred CcceeEEEeccChhHHHHHHHHHcCC--CCcEEEEeCC
Q 016451 87 DGNTKVGINGFGRIGRLVLRVAAFRD--DVDVVAVNDP 122 (389)
Q Consensus 87 ~m~ikVgINGfGrIGr~vlR~l~~r~--~~~iVaINd~ 122 (389)
++.+|+||.|.|+|+|-+++++..-+ +..||||.|+
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~ 41 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP 41 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc
Confidence 45799999999999999999998766 7999999997
No 155
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=79.67 E-value=2.3 Score=41.87 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=26.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|||||.|+|++|..+.+.|.+.+ ++|+..|-
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g-~~v~v~dr 31 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG-HEVVGYDR 31 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC-CeEEEEEC
Confidence 38999999999999999998875 77766653
No 156
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.56 E-value=8.1 Score=40.26 Aligned_cols=91 Identities=21% Similarity=0.192 Sum_probs=52.5
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
.+|.|.|.|.+|..+++.|.+++ .+++.+.. .+.+....+.++=..+| + .+..+ ..+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d~--~~~~~~~~~~~~l~~~g-----v------~~~~~---------~~~ 73 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG-ARVTVVDD--GDDERHRALAAILEALG-----A------TVRLG---------PGP 73 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEeC--CchhhhHHHHHHHHHcC-----C------EEEEC---------CCc
Confidence 37999999999999999999887 67666643 12221111111000011 1 11111 111
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
. + ..++|+||.++|.--..+......+.|. .|++
T Consensus 74 ~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi--~v~~ 107 (480)
T PRK01438 74 T-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI--PVWG 107 (480)
T ss_pred c-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC--eecc
Confidence 1 1 1368999999998766666666666776 4554
No 157
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=79.37 E-value=6 Score=38.54 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=53.7
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|.|.||..+++.+...+ .. ++++.. +.+.+..+.+ +|- . ..++.+.-.. +..
T Consensus 166 ~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~~---~~~~~~~~~~----~ga-~----------~~i~~~~~~~---~~~ 223 (339)
T cd08239 166 TVLVVGAGPVGLGALMLARALG-AEDVIGVDP---SPERLELAKA----LGA-D----------FVINSGQDDV---QEI 223 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEECC---CHHHHHHHHH----hCC-C----------EEEcCCcchH---HHH
Confidence 7999999999999999888776 66 777643 3344433322 221 0 1111110000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
.++. ...++|+||||+|.-...+.+-.+++.|.+-+++.
T Consensus 224 ~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 224 RELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred HHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 0000 11278999999997655566667777766444343
No 158
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=78.58 E-value=9.4 Score=40.55 Aligned_cols=89 Identities=22% Similarity=0.184 Sum_probs=56.9
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
.+||.|.|+|+-|+.+.|.|.+++ .+ |.++|....++.. .. . .+... .|.+...+.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~-v~v~D~~~~~~~~--~~-----------~-------~~~~~--~i~~~~g~~ 62 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-AE-VTVSDDRPAPEGL--AA-----------Q-------PLLLE--GIEVELGSH 62 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC-Ce-EEEEcCCCCccch--hh-----------h-------hhhcc--CceeecCcc
Confidence 358999999999999999999987 44 4566631111000 00 0 00000 122222222
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK 204 (389)
+. .+|. ..|+||-+=|...+.....+..+.|++
T Consensus 63 ~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 63 DD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred ch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 33 4454 789999999999999988888889984
No 159
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.52 E-value=2.5 Score=41.78 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=26.7
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
-+|+|.|+|+||+.+++.|...+ .+|...|.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEEeC
Confidence 48999999999999999998887 67776664
No 160
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=78.33 E-value=4.3 Score=40.18 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=24.4
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaIN 120 (389)
||+|.|.|.+|+.++..|..++-. +|+.++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 899999999999999999887633 555554
No 161
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.29 E-value=2 Score=42.40 Aligned_cols=24 Identities=17% Similarity=0.345 Sum_probs=21.0
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
..+|.|.|.|-+|-.++..|...+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999998764
No 162
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=78.14 E-value=2.7 Score=41.34 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=25.8
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
||||+|+|++|..+.+.|.+.+ ++|+..|.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g-~~v~v~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDG-HEVVGYDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEEEEEC
Confidence 8999999999999999998875 78776653
No 163
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=78.09 E-value=4.2 Score=36.09 Aligned_cols=108 Identities=25% Similarity=0.343 Sum_probs=57.6
Q ss_pred EEEec-cChhHHHHHHHHHcCC-CCcEEEEeCCCCCHHHHhhhhc-ccccccccCceEEEecCC-------eeEECCEEE
Q 016451 92 VGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDS-------TLEINGKLI 161 (389)
Q Consensus 92 VgING-fGrIGr~vlR~l~~r~-~~~iVaINd~~~~~~~layLlk-yDSthGkf~~~v~~~~~~-------~L~inGk~I 161 (389)
|.|.| +|-||++.++.+.+.+ +|+|+++-- ..+.+.|..+.+ |.. .-+-+.++. .+.-.+..+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa-~~n~~~L~~q~~~f~p------~~v~i~~~~~~~~l~~~~~~~~~~~ 73 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSA-GSNIEKLAEQAREFKP------KYVVIADEEAYEELKKALPSKGPGI 73 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEE-SSTHHHHHHHHHHHT-------SEEEESSHHHHHHHHHHHHHTTSSS
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEc-CCCHHHHHHHHHHhCC------CEEEEcCHHHHHHHHHHhhhcCCCC
Confidence 68999 9999999999998875 699999865 356666665543 211 111111000 000011122
Q ss_pred EEEecCC-CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 162 KVFSKRD-PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 162 ~v~~~~d-p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
+++...+ ..++- ...++|+|+-+.-.|...+-.-..+++| |++-+
T Consensus 74 ~v~~G~~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g-k~iaL 119 (129)
T PF02670_consen 74 EVLSGPEGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAG-KDIAL 119 (129)
T ss_dssp EEEESHHHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTT-SEEEE
T ss_pred EEEeChHHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCC-CeEEE
Confidence 2322111 00000 1135788888877777777666777777 45544
No 164
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=77.85 E-value=3.1 Score=36.71 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=26.3
Q ss_pred EEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 92 VgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R 30 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVR 30 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEES
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEec
Confidence 67999 9999999999999997 89988875
No 165
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=77.83 E-value=5.2 Score=41.26 Aligned_cols=96 Identities=25% Similarity=0.354 Sum_probs=56.0
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEE-EEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK-VFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~-v~~~~dp 169 (389)
.|+|.|.|-||-.++.-+..-+.=.|+|| |+ .++.+.+-.++=-| -.+|.+... +-+ ..
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAv-D~--~~~Kl~~A~~fGAT---------------~~vn~~~~~~vv~--~i 247 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAV-DI--NPEKLELAKKFGAT---------------HFVNPKEVDDVVE--AI 247 (366)
T ss_pred eEEEEeccHhHHHHHHHHHHcCCceEEEE-eC--CHHHHHHHHhcCCc---------------eeecchhhhhHHH--HH
Confidence 59999999999998888776665678888 42 45555444432222 233333221 100 00
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
.++ | +.|+|++|||+|.....+.+-.....+=+-|||
T Consensus 248 ~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 248 VEL-T-DGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred HHh-c-CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 111 2 238999999999877666554433333333444
No 166
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=77.68 E-value=16 Score=35.18 Aligned_cols=83 Identities=27% Similarity=0.324 Sum_probs=52.6
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
+|.|+|.|.+|..+++.+...+ .+++++-. +.+...++.+ +|- +. .++-+ +.
T Consensus 158 ~vlV~g~g~vg~~~~q~a~~~G-~~vi~~~~---~~~~~~~~~~----~g~---~~--------~~~~~--------~~- 209 (319)
T cd08242 158 KVAVLGDGKLGLLIAQVLALTG-PDVVLVGR---HSEKLALARR----LGV---ET--------VLPDE--------AE- 209 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHHHH----cCC---cE--------EeCcc--------cc-
Confidence 6899999999999999998886 67766643 3455544443 221 00 01100 00
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC
Q 016451 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 171 ~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK 204 (389)
.++ .++|+++||+|.-...+.+..+++.+.+
T Consensus 210 -~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~ 240 (319)
T cd08242 210 -SEG--GGFDVVVEATGSPSGLELALRLVRPRGT 240 (319)
T ss_pred -ccC--CCCCEEEECCCChHHHHHHHHHhhcCCE
Confidence 223 2799999999875455666677877663
No 167
>PRK08507 prephenate dehydrogenase; Validated
Probab=77.39 E-value=3 Score=40.30 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=28.7
Q ss_pred eeEEEeccChhHHHHHHHHHcCC-CCcEEEEeCCCCCHHHHhhh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYM 132 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~-~~~iVaINd~~~~~~~layL 132 (389)
|||+|.|+|.+|..+.+.+.+.+ ..+|++++- +++.+..+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~---~~~~~~~~ 41 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDH---NELHLKKA 41 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC---CHHHHHHH
Confidence 38999999999999999998775 235666542 45544333
No 168
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=77.19 E-value=4.1 Score=40.98 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=22.5
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEE
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVA 118 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVa 118 (389)
.||+|.|-|.+|..+...+..++-.+|+-
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~L 35 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVL 35 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence 48999999999999988877665235333
No 169
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=76.95 E-value=3.2 Score=38.43 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=25.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHH
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~l 129 (389)
|||+|.|.|.+|-.+.-++.+.+ ++++++ | ++.+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~-D--~~~~~v 36 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGV-D--IDEEKV 36 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-SEEEEE----S-HHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCC-CEEEEE-e--CChHHH
Confidence 59999999999998888888886 898888 3 355544
No 170
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=76.86 E-value=3 Score=41.03 Aligned_cols=39 Identities=31% Similarity=0.507 Sum_probs=29.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layL 132 (389)
|||||+|+|++|..+.+.|.+.+ ++|+..|- +++.+..+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g-~~V~~~dr---~~~~~~~l 39 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG-HDCVGYDH---DQDAVKAM 39 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC-CEEEEEEC---CHHHHHHH
Confidence 38999999999999999998875 78777653 55544333
No 171
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=76.80 E-value=2.9 Score=41.47 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.6
Q ss_pred cceeEEEeccChhHHHHHHHHHcCC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
+.++|+|.|+|.||+.+.|.+.+++
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 4569999999999999999999886
No 172
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=76.59 E-value=8.6 Score=33.92 Aligned_cols=79 Identities=23% Similarity=0.227 Sum_probs=44.5
Q ss_pred eeEEEecc-ChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 90 TKVGINGF-GRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 90 ikVgINGf-GrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
|||+|.|. |.||..++-.|..++-. ||+-+.. +.+ .+.=...|-.|..+.. +..+.+.. .
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~---~~~-~~~g~a~Dl~~~~~~~-------------~~~~~i~~-~ 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI---NED-KAEGEALDLSHASAPL-------------PSPVRITS-G 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES---SHH-HHHHHHHHHHHHHHGS-------------TEEEEEEE-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEecc---Ccc-cceeeehhhhhhhhhc-------------cccccccc-c
Confidence 59999998 99999999988877532 3444432 111 1111122333332221 11233333 3
Q ss_pred CCCCCCCCccCccEEEeccCCCC
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFT 190 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~ 190 (389)
+.+++. ++|+||-+.|.-.
T Consensus 63 ~~~~~~----~aDivvitag~~~ 81 (141)
T PF00056_consen 63 DYEALK----DADIVVITAGVPR 81 (141)
T ss_dssp SGGGGT----TESEEEETTSTSS
T ss_pred cccccc----cccEEEEeccccc
Confidence 444442 7899999999754
No 173
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.31 E-value=11 Score=39.93 Aligned_cols=83 Identities=23% Similarity=0.217 Sum_probs=51.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
-||.|.|+|++|+..++.|..++ .+++ +.|. .++....+.+ +| + .+...+ ..+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~-~~D~--~~~~~~~l~~----~g-----~------~~~~~~--------~~~ 65 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPT-VCDD--DPDALRPHAE----RG-----V------ATVSTS--------DAV 65 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEE-EEcC--CHHHHHHHHh----CC-----C------EEEcCc--------chH
Confidence 37999999999999999888876 5644 4663 3333322211 11 0 111111 112
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
+.+. +.|+||.|.|.-.+.+......+.|+
T Consensus 66 ~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 66 QQIA----DYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred hHhh----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2221 46999999999887777766677777
No 174
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.27 E-value=5 Score=38.37 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=26.6
Q ss_pred eeEEEeccChhHHHHHHHHHcCC-CCcEEEEeCCCCCHHHH
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYM 129 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~-~~~iVaINd~~~~~~~l 129 (389)
|||||.|+|+||+.+++.|...+ .+..+.+-+. +.+..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r--~~~~~ 39 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR--NAQIA 39 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECC--CHHHH
Confidence 38999999999999999998764 2232344442 44444
No 175
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=76.08 E-value=2.9 Score=36.43 Aligned_cols=93 Identities=20% Similarity=0.208 Sum_probs=53.1
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
-||.|.|.|-+||.++..|.+.+ +. |.-+|- +.+....|.+ . + ++..+.+....+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nR---t~~ra~~l~~--~-~-----------------~~~~~~~~~~~~ 68 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALG-AKEITIVNR---TPERAEALAE--E-F-----------------GGVNIEAIPLED 68 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTT-SSEEEEEES---SHHHHHHHHH--H-H-----------------TGCSEEEEEGGG
T ss_pred CEEEEECCHHHHHHHHHHHHHcC-CCEEEEEEC---CHHHHHHHHH--H-c-----------------CccccceeeHHH
Confidence 48999999999999999999886 55 666775 4444433332 0 0 111122222121
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC--EEEEcC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK--KVVISA 210 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK--kVIISa 210 (389)
..+ .-..+|+||.||+..... --+.+++.+-+ ++++.-
T Consensus 69 ~~~---~~~~~DivI~aT~~~~~~-i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 69 LEE---ALQEADIVINATPSGMPI-ITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp HCH---HHHTESEEEE-SSTTSTS-STHHHHTTTCHHCSEEEES
T ss_pred HHH---HHhhCCeEEEecCCCCcc-cCHHHHHHHHhhhhceecc
Confidence 111 112689999999986542 22235554433 477754
No 176
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=75.65 E-value=3.1 Score=40.48 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=28.8
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhh
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAY 131 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~lay 131 (389)
||||.|+|.+|+.+.+.+.+.+ ++|+..|- +++.+..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G-~~V~~~dr---~~~~~~~ 37 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG-YQLHVTTI---GPEVADE 37 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC-CeEEEEcC---CHHHHHH
Confidence 6999999999999999998876 78777753 4444433
No 177
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=75.61 E-value=41 Score=32.31 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=53.0
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
+|.|+|.|.+|..+++.+...+ ++++++-+. .+....+-+ +|- . ..++.+ ++
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g-~~v~~~~~~---~~~~~~~~~----~g~-~----------~~~~~~--------~~- 221 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQG-AEVFAFTRS---GEHQELARE----LGA-D----------WAGDSD--------DL- 221 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEcCC---hHHHHHHHH----hCC-c----------EEeccC--------cc-
Confidence 6889999999999999887776 788777542 233322211 121 0 011110 00
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEE
Q 016451 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKV 206 (389)
Q Consensus 171 ~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkV 206 (389)
.+.++|++++++|.....+.+..+++.|.+-+
T Consensus 222 ----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v 253 (329)
T cd08298 222 ----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVV 253 (329)
T ss_pred ----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEE
Confidence 12368999999887777788888998776433
No 178
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=75.59 E-value=1.9 Score=37.37 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=29.3
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhcc
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKY 135 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlky 135 (389)
||.|.|.|.+|..+++.|...+ + ++.-+.+-..+++.+...+-|
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD~d~v~~~nl~r~~~~ 45 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-VGKITLIDFDTVELSNLNRQFLA 45 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEcCCCcCcchhhccccC
Confidence 6899999999999999998765 4 344443223455555544433
No 179
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=74.93 E-value=10 Score=38.70 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=35.5
Q ss_pred cceeEEEec-cChhHHHHHHHHHcCCCCcEEE-EeCCCCCHHHHhhhhccc
Q 016451 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVA-VNDPFIDAKYMAYMFKYD 136 (389)
Q Consensus 88 m~ikVgING-fGrIGr~vlR~l~~r~~~~iVa-INd~~~~~~~layLlkyD 136 (389)
+..+|-|-| .|-||.-+++.|++|+ ..|.| |-|+ -+.+...||.+.+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~-~~~k~~~~L~~l~ 53 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDP-EDEKKTEHLRKLE 53 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCc-chhhhHHHHHhcc
Confidence 346899999 9999999999999998 55555 5555 4666666776644
No 180
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=74.34 E-value=2.3 Score=43.53 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=20.7
Q ss_pred cceeEEEeccChhHHHHHHHHHcCC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
+--+|||.|+||||+.+++.|...+
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg 185 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFG 185 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhcc
Confidence 4458999999999999999886543
No 181
>PLN02602 lactate dehydrogenase
Probab=74.00 E-value=4.7 Score=41.25 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=72.1
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCC-cEEEE--eCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAV--NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~-~iVaI--Nd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
.||+|.|.|.||..++-.+..++-. +|+-| |.-. +.=...|-.|.. .+.+. ..+...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~------~~g~a~DL~~~~-------------~~~~~-~~i~~~ 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDK------LRGEMLDLQHAA-------------AFLPR-TKILAS 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCch------hhHHHHHHHhhh-------------hcCCC-CEEEeC
Confidence 5999999999999999888776522 33333 3211 111111322221 11111 122221
Q ss_pred CCCCCCCCCccCccEEEeccCCCC----CHH------------HHHHHHHCC--CCEEEEcCCCCCCCeEEeecCccCCC
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFT----TIA------------KASAHMKGG--AKKVVISAPSADAPMFVVGVNEKTYK 228 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~----t~e------------~a~~hl~aG--aKkVIISaps~D~pt~V~GVN~~~y~ 228 (389)
.+.+++ .++|+||-+.|.-. ++. .++.-.+.+ +.-+++|+|.. .-+.+. -....+.
T Consensus 98 ~dy~~~----~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvd-v~t~~~-~k~sg~p 171 (350)
T PLN02602 98 TDYAVT----AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVD-VLTYVA-WKLSGFP 171 (350)
T ss_pred CCHHHh----CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchH-HHHHHH-HHHhCCC
Confidence 223322 38899999988742 332 122222233 22345577742 111111 0111132
Q ss_pred CCCCeEecCChhhhhhHHHHHHHHhhcCceEEe
Q 016451 229 PNMNIVSNASCTTNCLAPLAKVVHEEFGILEGL 261 (389)
Q Consensus 229 ~~~~IISnaSCTTncLAPvlkvL~d~fGI~~g~ 261 (389)
..+||.- ||.-=-+.+-..|.+.+|+..--
T Consensus 172 -~~rviG~--gt~LDs~R~r~~lA~~l~v~~~~ 201 (350)
T PLN02602 172 -ANRVIGS--GTNLDSSRFRFLIADHLDVNAQD 201 (350)
T ss_pred -HHHEEee--cchHHHHHHHHHHHHHhCCCccc
Confidence 3566654 55555677888899999987543
No 182
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=73.72 E-value=4 Score=43.61 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
-+|+|.|+|+|||.+++.+...+ ++|+.++
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~G-a~ViV~e 284 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFG-ARVVVTE 284 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 47999999999999999998876 6766554
No 183
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=72.93 E-value=4.4 Score=39.95 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=25.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+||+|.|.|.+|+.+.+.|...+ .+|...|.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G-~~V~~~~r 35 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANG-HRVRVWSR 35 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 48999999999999999998876 67665553
No 184
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=72.53 E-value=18 Score=36.16 Aligned_cols=96 Identities=24% Similarity=0.318 Sum_probs=53.7
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|-|.||..+++.+...+ . .|+++. .+.+.+.++-+ +|- . ..++.+.-... +..
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~---~~~~r~~~a~~----~Ga-~----------~~i~~~~~~~~--~~i 252 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAG-ASQVVAVD---LNEDKLALARE----LGA-T----------ATVNAGDPNAV--EQV 252 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEEc---CCHHHHHHHHH----cCC-c----------eEeCCCchhHH--HHH
Confidence 6999999999999999888776 5 466663 24455543332 221 0 11111000000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
.++.. .++|+||||+|.-.+.+.+-..++.|-+-|++.
T Consensus 253 ~~~~~--~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 253 RELTG--GGVDYAFEMAGSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred HHHhC--CCCCEEEECCCChHHHHHHHHHHhcCCEEEEEc
Confidence 01111 278999999997656666667777666434443
No 185
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=72.50 E-value=7.7 Score=38.33 Aligned_cols=115 Identities=20% Similarity=0.235 Sum_probs=62.6
Q ss_pred eEEEeccChhHHHHHHHHHc----------CCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCE-
Q 016451 91 KVGINGFGRIGRLVLRVAAF----------RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGK- 159 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~----------r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk- 159 (389)
+|.|.|.|-+|--++++|.. .+++.+.-+|- .+.-|+ +++|+-+-++..| .-..||=.
T Consensus 32 ~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NR------Qi~A~~---~~iGk~Kv~vm~e--ri~~InP~c 100 (263)
T COG1179 32 HVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNR------QIHALL---GDIGKPKVEVMKE--RIKQINPEC 100 (263)
T ss_pred cEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccch------hhHhhh---hhcccHHHHHHHH--HHHhhCCCc
Confidence 79999999999999999974 35677666664 222344 4566654332211 11112210
Q ss_pred ---EEE-EEecCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCC--CCeE
Q 016451 160 ---LIK-VFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMF 218 (389)
Q Consensus 160 ---~I~-v~~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D--~pt~ 218 (389)
.+. .+.+.+.+++-. .+.||||||......+-..-.+...-..+||-|..... +||-
T Consensus 101 ~V~~~~~f~t~en~~~~~~--~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTr 163 (263)
T COG1179 101 EVTAINDFITEENLEDLLS--KGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTR 163 (263)
T ss_pred eEeehHhhhCHhHHHHHhc--CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCce
Confidence 010 111222333333 27899999999887765444433333335555554432 5654
No 186
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=72.28 E-value=5.5 Score=32.80 Aligned_cols=34 Identities=35% Similarity=0.559 Sum_probs=26.1
Q ss_pred EEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHH
Q 016451 92 VGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (389)
Q Consensus 92 VgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~l 129 (389)
|-|.|+|++|+.+++.|.++. .+++.|.. +++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~---d~~~~ 34 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDR---DPERV 34 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEES---SHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEEC---CcHHH
Confidence 468999999999999999954 78888864 55543
No 187
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.11 E-value=4.8 Score=41.23 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|||.|.|+|++|+.+.+.|.+++ .+++.|..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g-~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN-NDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CcEEEEEC
Confidence 48999999999999999998875 78888853
No 188
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.01 E-value=5.1 Score=39.24 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=30.3
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCC---CcEEEEeCCCCCHHHHhhhh
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDD---VDVVAVNDPFIDAKYMAYMF 133 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~---~~iVaINd~~~~~~~layLl 133 (389)
|.+||||.|.|.+|..+++.|.+++. .+|.+.|. +.+.+..+.
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r---~~~~~~~l~ 46 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL---NVSNLKNAS 46 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC---CHHHHHHHH
Confidence 55699999999999999999987652 24555542 445544443
No 189
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.81 E-value=5.1 Score=38.90 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=24.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCC---CCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD---DVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~---~~~iVaIN 120 (389)
|||+|.|.|.+|+.+++.|.+++ ..+|+..|
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~ 37 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN 37 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC
Confidence 48999999999999999998764 14555555
No 190
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=71.54 E-value=4.7 Score=41.47 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=26.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|||||.|.|.+|..+...|.+.+ .+|++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G-~~V~~~d 30 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG-HEVTGVD 30 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC-CeEEEEE
Confidence 48999999999999999998876 7877775
No 191
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=71.42 E-value=5.1 Score=39.55 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=24.9
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
||||.|.|++|..+.+.|.+.+ +++...|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~v~~ 30 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLHVTT 30 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEEEEe
Confidence 7999999999999999999876 6766554
No 192
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=71.34 E-value=6.6 Score=42.76 Aligned_cols=40 Identities=25% Similarity=0.459 Sum_probs=31.9
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhh
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layL 132 (389)
..+|-|.||||+|+.+.|.|.+++ +++++|.. |++..-.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~---d~~~v~~~ 439 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK-MRITVLER---DISAVNLM 439 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC-CCEEEEEC---CHHHHHHH
Confidence 347999999999999999998775 89888853 66665443
No 193
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=71.10 E-value=28 Score=36.72 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=28.5
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~ 122 (389)
.||+|-|||.+|+.+++.+.+.+ -+||++.|.
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~G-Akvva~sds 239 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELG-AKVVAVSDS 239 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcC-CEEEEEEcC
Confidence 58999999999999999998775 789999875
No 194
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=71.08 E-value=8.3 Score=38.45 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=24.5
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCC-CcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDD-VDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~-~~iVaIN 120 (389)
|||+|.| .|.+|..++..+..++- .+|+.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 5899999 59999999999988763 2466653
No 195
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=70.89 E-value=7.7 Score=40.49 Aligned_cols=110 Identities=20% Similarity=0.276 Sum_probs=63.2
Q ss_pred eeEEEec-cChhHHHHHHHHHcCC-CCcEEEEeCCCCCHHHHhhhhc-ccccccccCceEEEecCC---eeE--EC--CE
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDS---TLE--IN--GK 159 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~-~~~iVaINd~~~~~~~layLlk-yDSthGkf~~~v~~~~~~---~L~--in--Gk 159 (389)
.||+|.| +|-||++.++.+...+ +|+|+++.- ..+.+.+..+.+ |.. .-+-+.++. .+. .. |.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa-~~n~~~L~~q~~~f~p------~~v~i~d~~~~~~l~~~l~~~~~ 74 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSA-GKNVALMVEQILEFRP------KFVAIDDEASLKDLKTMLQQQGS 74 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEc-CCCHHHHHHHHHHcCC------CEEEEcCHHHHHHHHHHhhcCCC
Confidence 3899999 9999999999987654 699999865 345555554443 211 122221110 010 01 21
Q ss_pred EEEEEecCC-CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 160 LIKVFSKRD-PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 160 ~I~v~~~~d-p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
.++++...+ ..++ -....+|+|+-+.-.+....---..+++| |++-+
T Consensus 75 ~~~v~~G~~~l~~l-~~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaL 122 (389)
T TIGR00243 75 RTEVLVGEEGICEM-AALEDVDQVMNAIVGAAGLLPTLAAIRAG-KTIAL 122 (389)
T ss_pred CcEEEECHHHHHHH-HcCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEE
Confidence 234443221 1111 01125899999887777776666778888 55545
No 196
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=70.84 E-value=5.6 Score=38.72 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=25.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|||+|.|.|.+|..+.+.|...+ .++..++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g-~~V~~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG-HDVTLWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 59999999999999999998775 5655554
No 197
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=70.65 E-value=14 Score=36.95 Aligned_cols=90 Identities=20% Similarity=0.106 Sum_probs=57.0
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
-||-|.| +|++|..+++.+..-+--.+.+||- |++..++ .| ++++ +.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p------------------~~~~~~v----------~G--~~~y--~s 54 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTP------------------GKGGTTV----------LG--LPVF--DS 54 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCCEEEEECC------------------CCCccee----------cC--eecc--CC
Confidence 4899999 9999999999888765224555763 1111111 12 1222 23
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE-cCCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI-SAPS 212 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII-Saps 212 (389)
.+++|..- ++|+++-+.+.....+-.+...+.|+|.+|| |+..
T Consensus 55 v~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf 98 (286)
T TIGR01019 55 VKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVCITEGI 98 (286)
T ss_pred HHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 44455321 3799999988877777777777889887654 5543
No 198
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=70.57 E-value=11 Score=38.62 Aligned_cols=31 Identities=39% Similarity=0.496 Sum_probs=26.7
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+||.|.| .|.||+.+++.|.+++ .+|+++.-
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R 92 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRRG-YNVVAVAR 92 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEe
Confidence 5899999 9999999999999886 78777653
No 199
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=70.29 E-value=5 Score=38.97 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=58.4
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCC--------CCCHHHHhhhhc-ccccccccCceEEEecCCeeEECCEE
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP--------FIDAKYMAYMFK-YDSTHGVFKGTINVVDDSTLEINGKL 160 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~--------~~~~~~layLlk-yDSthGkf~~~v~~~~~~~L~inGk~ 160 (389)
.+|+|=|||.+|+.+++.|.+.+ ..||+|.|. ..|.+.+..+.+ +.+.-..++.. . -++
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~G-a~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~--~-------~~~-- 100 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELG-AKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLE--S-------PDG-- 100 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT-EEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHT--C-------SST--
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccc--c-------ccc--
Confidence 58999999999999999999986 889999442 234454443321 11100111100 0 000
Q ss_pred EEEEecCCCCCCCCCccCccEEEecc-CCCCCHHHHHHHHHCCCCEEEE
Q 016451 161 IKVFSKRDPAEIPWGDYGVDYVVESS-GVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 161 I~v~~~~dp~~i~W~~~gvD~VvEsT-G~f~t~e~a~~hl~aGaKkVII 208 (389)
...+.. .+++ | +..+|+.+=|. +.-.+.+.+...++.||| +|+
T Consensus 101 ~~~~~~--~~~i-l-~~~~DiliP~A~~~~I~~~~~~~~i~~~ak-iIv 144 (244)
T PF00208_consen 101 AEYIPN--DDEI-L-SVDCDILIPCALGNVINEDNAPSLIKSGAK-IIV 144 (244)
T ss_dssp SEEECH--HCHG-G-TSSSSEEEEESSSTSBSCHHHCHCHHTT-S-EEE
T ss_pred eeEecc--cccc-c-cccccEEEEcCCCCeeCHHHHHHHHhccCc-EEE
Confidence 001110 0111 3 35899999886 666777777767888886 345
No 200
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=70.24 E-value=5.5 Score=41.37 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=30.7
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMA 130 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~la 130 (389)
+||+|.|.|.+|..+...|.+++ +++++++- +++.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D~---~~~~v~ 40 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ-KQVIGVDI---NQHAVD 40 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC-CEEEEEeC---CHHHHH
Confidence 68999999999999999999886 88888862 555554
No 201
>PRK08618 ornithine cyclodeaminase; Validated
Probab=70.22 E-value=17 Score=36.30 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=52.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhc-ccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlk-yDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
-+|+|.|.|.+||..++++.....++-|.|=+. +++....+.+ +...+ . + .+..+ .+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r--~~~~a~~~~~~~~~~~---~----------~-----~~~~~--~~ 185 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR--TFEKAYAFAQEIQSKF---N----------T-----EIYVV--NS 185 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECC--CHHHHHHHHHHHHHhc---C----------C-----cEEEe--CC
Confidence 479999999999999988765445777777663 4444433321 00000 0 0 11111 12
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
+++.- .++|+|+-||+.... ... ..++.|+ .|++
T Consensus 186 ~~~~~---~~aDiVi~aT~s~~p-~i~-~~l~~G~--hV~~ 219 (325)
T PRK08618 186 ADEAI---EEADIIVTVTNAKTP-VFS-EKLKKGV--HINA 219 (325)
T ss_pred HHHHH---hcCCEEEEccCCCCc-chH-HhcCCCc--EEEe
Confidence 21110 268999999997743 334 6778888 5553
No 202
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=70.07 E-value=7.3 Score=42.65 Aligned_cols=39 Identities=28% Similarity=0.484 Sum_probs=31.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layL 132 (389)
-+|-|.||||+|+.+.|.|.+++ +++++|. .|++..-.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID---~d~~~v~~~ 439 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG-VKMTVLD---HDPDHIETL 439 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC-CCEEEEE---CCHHHHHHH
Confidence 47999999999999999998875 8988884 366655333
No 203
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=69.53 E-value=6 Score=40.94 Aligned_cols=37 Identities=35% Similarity=0.528 Sum_probs=26.4
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHh
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMA 130 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~la 130 (389)
.+||.||||||+.|.+.+..-+ +.++.- || +.+...+
T Consensus 148 TLgvlG~GrIGseVA~r~k~~g-m~vI~~-dp-i~~~~~~ 184 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAMG-MHVIGY-DP-ITPMALA 184 (406)
T ss_pred EEEEeecccchHHHHHHHHhcC-ceEEee-cC-CCchHHH
Confidence 5999999999999999887765 555544 44 3444443
No 204
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=68.85 E-value=7.2 Score=39.56 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
+||+|.|-|+||..++-.|..+.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~ 23 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQG 23 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccc
Confidence 48999999999999988886654
No 205
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=68.80 E-value=6 Score=40.29 Aligned_cols=31 Identities=32% Similarity=0.270 Sum_probs=26.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|||+|+|.+|+.+++.|...+ ++++..+.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG-VDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC-CEEEEEEC
Confidence 47999999999999999998876 77765554
No 206
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=68.77 E-value=19 Score=36.09 Aligned_cols=29 Identities=17% Similarity=0.575 Sum_probs=23.9
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|.|.|.|.||..+++.+...+ .+++++.
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~ 214 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVIS 214 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 6899999999999999888776 6666654
No 207
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=68.67 E-value=24 Score=35.33 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=23.7
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCC-cEEEE
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~-~iVaI 119 (389)
.||+|.|.|.||..++-.+..++-+ +|+-+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~ 37 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVII 37 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 4999999999999999988877633 44444
No 208
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=68.50 E-value=39 Score=32.97 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=51.4
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
+|.|.|.|.+|+.+++.+...+ .+++++-. +.+...++-+ +| .+ ..++.+.... ..
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G-~~v~~~~~---~~~~~~~~~~----~g-~~----------~vi~~~~~~~-----~~ 227 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALG-AEVTAFSR---SPSKKEDALK----LG-AD----------EFIATKDPEA-----MK 227 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHHHH----cC-Cc----------EEecCcchhh-----hh
Confidence 6888899999999988887765 57666533 2333333322 22 00 0111110000 00
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 171 ~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
.+ ..++|+|++|+|.-...+.+-.+++.+.+-+.+
T Consensus 228 ~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 228 KA---AGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred hc---cCCceEEEECCCCcchHHHHHHHhcCCCEEEEE
Confidence 11 237999999999765566677777766533333
No 209
>PLN02494 adenosylhomocysteinase
Probab=68.07 E-value=6.3 Score=42.15 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=25.6
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
-+|+|.|+|.||+.+++.+...+ ..|++++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G-a~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG-ARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 37999999999999999998776 6777764
No 210
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=67.36 E-value=7.2 Score=38.06 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=25.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.||||.|.|.+|..+++.+...+ ++|+..+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~d 34 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLLD 34 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CeEEEEe
Confidence 37999999999999999998876 7877775
No 211
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=67.34 E-value=71 Score=29.90 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=26.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
-||-|.|-|.+|...++.|.+.+ .+|+.|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEcC
Confidence 37999999999999999999876 56766763
No 212
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=66.56 E-value=30 Score=34.28 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=24.4
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCc-EEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~-iVaIN 120 (389)
-+|.|.|.|.||..+++.+...+ .+ ++++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAG-ASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 37999999999999999888776 54 66663
No 213
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=66.51 E-value=7.3 Score=38.32 Aligned_cols=39 Identities=8% Similarity=0.187 Sum_probs=29.4
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layL 132 (389)
.||||.|.|++|..+.+.+.+.+ ++|...|- +++.+..+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V~v~d~---~~~~~~~~ 40 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQLQVFDV---NPQAVDAL 40 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeEEEEcC---CHHHHHHH
Confidence 38999999999999999998876 67766653 44444333
No 214
>PRK06988 putative formyltransferase; Provisional
Probab=66.33 E-value=7.9 Score=38.79 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.9
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEE
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaI 119 (389)
|+|||.+.|++.+|...|+.|.+++ ++|++|
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~-~~i~~V 31 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG-VDVALV 31 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC-CCEEEE
Confidence 4579999999999999999999875 777766
No 215
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=66.06 E-value=8.5 Score=35.32 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=23.1
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
||||.|.|.+|+.+...+...+ ++++-+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d 29 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-YEVTLYD 29 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-SEEEEE-
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CcEEEEE
Confidence 7999999999999999888876 7766553
No 216
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=65.95 E-value=8.5 Score=37.13 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
|||+|.|.|.+|..+++.+.+.+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCC
Confidence 58999999999999999998764
No 217
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=65.87 E-value=3.3 Score=37.83 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.6
Q ss_pred eEEEeccChhHHHHHHHHHcCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~ 112 (389)
||.|.|.|-+|-.++..|...+
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999987765
No 218
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=65.72 E-value=8.7 Score=35.97 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=24.2
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|||+|.| .|.+|..+.+.|.+.+ .+|+..+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIGS 31 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 4899997 9999999999998875 5655443
No 219
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=65.63 E-value=7.9 Score=38.95 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=25.6
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.||||.|+|++|+.+++.|...+ ++++..++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~~ 34 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG-LNVIVGLR 34 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC-CeEEEEEC
Confidence 37999999999999999998876 67655454
No 220
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=65.48 E-value=10 Score=40.57 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=30.5
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHH
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~l 129 (389)
++=+|-|.|+||+||.+.|.|.+++ .+++.|.. |++..
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~---d~~~~ 453 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAAG-IPLVVIET---SRTRV 453 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHCC-CCEEEEEC---CHHHH
Confidence 3447899999999999999998876 78888853 55544
No 221
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=65.18 E-value=2.9 Score=39.51 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.0
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
..||.|.|.|-+|-.+++.|...+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999988765
No 222
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=64.95 E-value=3.4 Score=41.92 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.9
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDV 114 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~ 114 (389)
..||.|.|.|.+|..+++.|...+ +
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG-v 48 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG-I 48 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-C
Confidence 458999999999999999998775 5
No 223
>PLN02778 3,5-epimerase/4-reductase
Probab=64.93 E-value=17 Score=35.60 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=26.6
Q ss_pred CCcceeEEEec-cChhHHHHHHHHHcCCCCcEEE
Q 016451 86 SDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVA 118 (389)
Q Consensus 86 ~~m~ikVgING-fGrIGr~vlR~l~~r~~~~iVa 118 (389)
.+|++||-|-| .|.||+.+++.|.+++ .+++.
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~ 38 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQG-IDFHY 38 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCC-CEEEE
Confidence 35667999999 9999999999999886 56553
No 224
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=64.90 E-value=9 Score=37.34 Aligned_cols=32 Identities=13% Similarity=0.355 Sum_probs=26.1
Q ss_pred eeEEEeccChhHHHHHHHHHcCCC---CcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDD---VDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~---~~iVaINd 121 (389)
+||+|.|.|.+|..+.+.|.+.+. .+|++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 589999999999999999887642 46777764
No 225
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=64.80 E-value=8.4 Score=38.00 Aligned_cols=30 Identities=33% Similarity=0.235 Sum_probs=25.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+||+|.|.|.+|..+...+..++ .+|+.++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G-~~V~v~d 32 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG-HEVRLWD 32 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC-CeeEEEe
Confidence 38999999999999999998886 7777775
No 226
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=64.51 E-value=42 Score=33.15 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=28.5
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhh
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layL 132 (389)
+|.|.|.|.||..+++.+...+ ..++++.. +++.+..+
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~~---~~~~~~~~ 206 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAMG-AAVVAIDI---DPEKLEMM 206 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHH
Confidence 6999999999999999888876 67776632 44555444
No 227
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=64.50 E-value=8.5 Score=40.87 Aligned_cols=38 Identities=21% Similarity=0.132 Sum_probs=29.0
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHH
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~l 129 (389)
|.+||||+|.|.||..+...+...+ ++|+..+ + +++.+
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G-~~V~v~D-~--~~~~~ 40 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAG-IDVAVFD-P--HPEAE 40 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCC-CeEEEEe-C--CHHHH
Confidence 4458999999999999999988876 7766554 3 45544
No 228
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=64.47 E-value=8 Score=40.51 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=25.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
-+|+|.|+|.||+.+++.+...+ .+++++.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G-a~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG-ARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc-CEEEEEe
Confidence 38999999999999999998776 6766663
No 229
>PRK08818 prephenate dehydrogenase; Provisional
Probab=64.46 E-value=8.4 Score=39.81 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=24.8
Q ss_pred ceeEEEecc-ChhHHHHHHHHHcCCCCcEEEE
Q 016451 89 NTKVGINGF-GRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 89 ~ikVgINGf-GrIGr~vlR~l~~r~~~~iVaI 119 (389)
+.||+|.|+ |.||+.+.+++.++...+|.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 358999998 9999999999986534666554
No 230
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=64.39 E-value=8.8 Score=38.03 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=26.1
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|||+|.|.|.+|..+.+.|...+ .+|..++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG-VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CeEEEEeC
Confidence 48999999999999999998775 67666654
No 231
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=64.30 E-value=18 Score=36.03 Aligned_cols=90 Identities=28% Similarity=0.331 Sum_probs=50.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEE--EEEec
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLI--KVFSK 166 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I--~v~~~ 166 (389)
-+|.|.|.|-||..+++.+...+ . .++++.. +.+.+.++-+ +|- . ..++-+.. .+ .
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~---~~~~~~~~~~----~Ga-~----------~~i~~~~~~~~~--~ 247 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG-ASRIIGVDL---NPSKFEQAKK----FGV-T----------EFVNPKDHDKPV--Q 247 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcC---CHHHHHHHHH----cCC-c----------eEEcccccchhH--H
Confidence 37999999999999999888776 5 5666642 3444444322 221 0 01111000 00 0
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCC
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGG 202 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aG 202 (389)
+...++.- .++|+||||+|.-.....+-.+++.|
T Consensus 248 ~~v~~~~~--~~~d~vid~~G~~~~~~~~~~~~~~~ 281 (369)
T cd08301 248 EVIAEMTG--GGVDYSFECTGNIDAMISAFECVHDG 281 (369)
T ss_pred HHHHHHhC--CCCCEEEECCCChHHHHHHHHHhhcC
Confidence 00011111 27999999999754555555666654
No 232
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=64.09 E-value=13 Score=35.82 Aligned_cols=92 Identities=21% Similarity=0.061 Sum_probs=54.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
++++|.|+|.||..+.+.+...+ .|++-.|- -.++.++-+.+|= + .. |...+ .+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag-~eV~igs~--r~~~~~~a~a~~l-------------~--~~------i~~~~--~~ 55 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG-HEVIIGSS--RGPKALAAAAAAL-------------G--PL------ITGGS--NE 55 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC-CeEEEecC--CChhHHHHHHHhh-------------c--cc------cccCC--hH
Confidence 58999999999999999988775 67665543 3455454443321 0 11 11111 11
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISap 211 (389)
+-. ...|+||-+..-.--.+-++.+.+.=--|+||+.-
T Consensus 56 dA~----~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~t 93 (211)
T COG2085 56 DAA----ALADVVVLAVPFEAIPDVLAELRDALGGKIVIDAT 93 (211)
T ss_pred HHH----hcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecC
Confidence 111 25799999888655555555555422257999643
No 233
>PRK07201 short chain dehydrogenase; Provisional
Probab=64.04 E-value=45 Score=35.83 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=25.6
Q ss_pred eeEEEec-cChhHHHHHHHHHc-CCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAF-RDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~-r~~~~iVaINd 121 (389)
|||-|-| .|.||+.+++.|.+ ....+|+++..
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R 34 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVR 34 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3799999 99999999999985 23467777764
No 234
>PRK06444 prephenate dehydrogenase; Provisional
Probab=64.03 E-value=7.7 Score=36.56 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.7
Q ss_pred eeEEEec-cChhHHHHHHHHHcCC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRD 112 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~ 112 (389)
|||+|+| .|+.||.+.+.+...+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g 24 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG 24 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC
Confidence 4899999 8999999999887654
No 235
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=63.79 E-value=36 Score=34.94 Aligned_cols=85 Identities=24% Similarity=0.289 Sum_probs=49.8
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHH--hhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM--AYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~l--ayLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
||.|.|.|.+|+.++|.|.+++ .+ |.+.|.......- ..+++. -.| |.++...+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~-V~~sD~~~~~~~~~~~~~~~~--------------------~~g--i~~~~g~~ 56 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AE-VTVTDLKPNEELEPSMGQLRL--------------------NEG--SVLHTGLH 56 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CE-EEEEeCCCCccchhHHHHHhh--------------------ccC--cEEEecCc
Confidence 5789999999999999999887 55 4456631111100 011110 001 12221123
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
++++. +.|+||=+.|.-.+.+......+.|.
T Consensus 57 ~~~~~----~~d~vv~sp~i~~~~p~~~~a~~~~i 87 (433)
T TIGR01087 57 LEDLN----NADLVVKSPGIPPDHPLVQAAAKRGI 87 (433)
T ss_pred hHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 33332 57999999999776666666666776
No 236
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=63.47 E-value=24 Score=35.08 Aligned_cols=93 Identities=17% Similarity=0.292 Sum_probs=52.6
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
+|.|+|.|.||..+++.+...+ ..++++-+ +.+....+++ .+|- . . . ++... .....
T Consensus 183 ~vlV~G~G~vG~~av~~Ak~~G-~~vi~~~~---~~~~~~~~~~---~~Ga-~--~-------~-i~~~~-----~~~~~ 239 (357)
T PLN02514 183 RGGILGLGGVGHMGVKIAKAMG-HHVTVISS---SDKKREEALE---HLGA-D--D-------Y-LVSSD-----AAEMQ 239 (357)
T ss_pred eEEEEcccHHHHHHHHHHHHCC-CeEEEEeC---CHHHHHHHHH---hcCC-c--E-------E-ecCCC-----hHHHH
Confidence 6889999999999999888776 66666643 2233322222 1231 1 0 0 11000 00001
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 171 ~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
+.. .++|+||||+|.-.+.+.+-..++.|.+-|.+.
T Consensus 240 ~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 240 EAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred Hhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEEC
Confidence 111 168999999996555666667777776444443
No 237
>PLN02740 Alcohol dehydrogenase-like
Probab=63.10 E-value=19 Score=36.23 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=24.2
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaIN 120 (389)
+|.|+|.|.||..+++.+...+ . .|+++.
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~ 230 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARG-ASKIIGVD 230 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CCcEEEEc
Confidence 7999999999999999988876 5 466663
No 238
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=62.71 E-value=25 Score=34.77 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=21.5
Q ss_pred eEEEeccChhHHHHHHHHHc-CCCCcEEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAF-RDDVDVVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~-r~~~~iVaI 119 (389)
+|.|.|.|-||..+++.+.. .+...++++
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~ 195 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVF 195 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 69999999999988877653 333456655
No 239
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=62.63 E-value=15 Score=40.08 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=33.3
Q ss_pred CCCcceeEEEec-cChhHHHHHHHHHcCCCCcE-EEEeCCCCCHHHHhhhh
Q 016451 85 RSDGNTKVGING-FGRIGRLVLRVAAFRDDVDV-VAVNDPFIDAKYMAYMF 133 (389)
Q Consensus 85 ~~~m~ikVgING-fGrIGr~vlR~l~~r~~~~i-VaINd~~~~~~~layLl 133 (389)
.+.+.|||-|-| .|.||+.+.+.|.+++ .++ ++..|+ .|++.+.-++
T Consensus 376 ~~~~~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~~~~~l-~d~~~v~~~i 424 (668)
T PLN02260 376 PGKPSLKFLIYGRTGWIGGLLGKLCEKQG-IAYEYGKGRL-EDRSSLLADI 424 (668)
T ss_pred CCCCCceEEEECCCchHHHHHHHHHHhCC-CeEEeecccc-ccHHHHHHHH
Confidence 334457999999 9999999999998875 676 455553 4555544333
No 240
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=62.56 E-value=10 Score=37.30 Aligned_cols=32 Identities=28% Similarity=0.233 Sum_probs=27.5
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+||-|-| .|.||+.+++.|.+++..+|++++-
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4899999 8999999999998764578888863
No 241
>PLN02427 UDP-apiose/xylose synthase
Probab=62.51 E-value=10 Score=38.12 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=27.7
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+||-|-| .|.||+.+++.|.+++..+|+++..
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 5899999 9999999999999884478888864
No 242
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=62.42 E-value=40 Score=32.30 Aligned_cols=94 Identities=20% Similarity=0.278 Sum_probs=53.3
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|-|+| .|.+|..+++.+...+ .+++++.. +.+...++.+ +|- . . .++.+.-.+. +..
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~---s~~~~~~l~~----~Ga-~---------~-vi~~~~~~~~--~~v 204 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAG---SDDKVAWLKE----LGF-D---------A-VFNYKTVSLE--EAL 204 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHH----cCC-C---------E-EEeCCCccHH--HHH
Confidence 688999 8999999999888876 67777653 3344444432 231 0 0 1111000000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
. .+...++|+|+||+|. ...+.+-.+++.+.+-|.+
T Consensus 205 ~--~~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 205 K--EAAPDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred H--HHCCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 0 1112379999999997 4556666777766643333
No 243
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.00 E-value=11 Score=36.79 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=29.5
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhh
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMF 133 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLl 133 (389)
||+|.|.|.+|+.+...+..++ ++|+.++ .+++.+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G-~~V~~~d---~~~~~~~~~~ 41 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG-FQTTLVD---IKQEQLESAQ 41 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC-CcEEEEe---CCHHHHHHHH
Confidence 7999999999999999988875 7776664 2555554443
No 244
>PRK07680 late competence protein ComER; Validated
Probab=61.72 E-value=11 Score=36.52 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.6
Q ss_pred eeEEEeccChhHHHHHHHHHcCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
|||+|+|.|.+|+.+++.|.+.+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g 23 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESG 23 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCC
Confidence 37999999999999999998765
No 245
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=61.36 E-value=11 Score=36.78 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.2
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
||+|.|.|.+|+.+...+..++ ++|+.++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G-~~V~l~d 33 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTG-YDVTIVD 33 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcC-CeEEEEe
Confidence 7999999999999999998876 7777664
No 246
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=61.35 E-value=72 Score=30.09 Aligned_cols=90 Identities=21% Similarity=0.213 Sum_probs=50.6
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|.|.+|..+++.+...+ ++ ++++.. +.+....+-+ +|- . -.++.+...+. +..
T Consensus 132 ~vlI~g~g~vg~~~~~la~~~g-~~~v~~~~~---~~~~~~~~~~----~g~-~----------~~~~~~~~~~~--~~l 190 (312)
T cd08269 132 TVAVIGAGFIGLLFLQLAAAAG-ARRVIAIDR---RPARLALARE----LGA-T----------EVVTDDSEAIV--ERV 190 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC---CHHHHHHHHH----hCC-c----------eEecCCCcCHH--HHH
Confidence 6899999999999999888876 77 776654 3343332222 221 0 01111000000 000
Q ss_pred C-CCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 170 A-EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 170 ~-~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
. ..++ .++|++++|.|.-...+.+..+++.+.
T Consensus 191 ~~~~~~--~~vd~vld~~g~~~~~~~~~~~l~~~g 223 (312)
T cd08269 191 RELTGG--AGADVVIEAVGHQWPLDLAGELVAERG 223 (312)
T ss_pred HHHcCC--CCCCEEEECCCCHHHHHHHHHHhccCC
Confidence 0 0122 379999999986545566667777665
No 247
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=61.35 E-value=9 Score=38.39 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.7
Q ss_pred eEEEeccChhHHHHHHHHHcCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~ 112 (389)
||+|.|.|.||..++-.|..++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~ 22 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 7999999999999988887765
No 248
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=60.90 E-value=10 Score=37.63 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=24.1
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.||+|.|.|.||+.+++.+...+--+|..+|
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~ 209 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIAN 209 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 5899999999999999999875423444454
No 249
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.89 E-value=13 Score=36.47 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=25.5
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.||+|.|.|.+|..+...+...+ ++|+.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g-~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG-LQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 48999999999999999988765 7777664
No 250
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.88 E-value=25 Score=36.09 Aligned_cols=88 Identities=25% Similarity=0.248 Sum_probs=51.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
.+|.|.|-|++|+.+++.|.+++ .+|+++ |. .+.+.+...++ + |.-.| ++++....+
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~-d~-~~~~~~~~~~~-~-----------------l~~~~--~~~~~~~~~ 62 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG-AKVILT-DE-KEEDQLKEALE-E-----------------LGELG--IELVLGEYP 62 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eC-CchHHHHHHHH-H-----------------HHhcC--CEEEeCCcc
Confidence 47999999999999999999987 565544 53 12122211111 0 00001 112111112
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
.++ ..+.|+||-++|.....+......+.|.
T Consensus 63 ~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i 93 (450)
T PRK14106 63 EEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI 93 (450)
T ss_pred hhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 111 1258999999998887776666666676
No 251
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=60.63 E-value=11 Score=34.95 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=26.8
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
++|-|.| +|.||+.+++.|.+++ .++++++.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~-~~v~~~~r 32 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG-HEVRAAVR 32 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC-CEEEEEEe
Confidence 3789999 9999999999999995 77777764
No 252
>PRK05865 hypothetical protein; Provisional
Probab=60.10 E-value=25 Score=40.37 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=26.4
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|||.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEC
Confidence 3799999 8999999999999886 67777754
No 253
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.02 E-value=12 Score=36.24 Aligned_cols=30 Identities=37% Similarity=0.595 Sum_probs=25.7
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.||+|.|.|.+|..+...+..++ ++++.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g-~~V~~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG-YDVVMVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC-CceEEEe
Confidence 38999999999999999998876 6777764
No 254
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=59.75 E-value=45 Score=32.08 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=51.8
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
+|.|.|-|-+|+.+++.+...+ ++++++.. +.+...++-+ +| .. . .++.+......
T Consensus 165 ~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~---~~~~~~~~~~----~g-~~---------~-~~~~~~~~~~~----- 220 (330)
T cd08245 165 RVAVLGIGGLGHLAVQYARAMG-FETVAITR---SPDKRELARK----LG-AD---------E-VVDSGAELDEQ----- 220 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEeC---CHHHHHHHHH----hC-Cc---------E-EeccCCcchHH-----
Confidence 6899998889999999888776 77776654 3344434322 12 00 1 11111000000
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 171 ~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
. .. .++|+|++|.|.....+.+-.+++.+.+-+.++
T Consensus 221 ~--~~-~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 221 A--AA-GGADVILVTVVSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred h--cc-CCCCEEEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence 0 11 268999999876555566666776655444443
No 255
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=59.70 E-value=57 Score=33.58 Aligned_cols=92 Identities=20% Similarity=0.347 Sum_probs=59.4
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
+|+|.|+|=.|...++.+.... .+++|+.- +.+.+....+ .| ....++.+ +++
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~---~~~K~e~a~~----lG-----------Ad~~i~~~--------~~~ 221 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMG-AEVIAITR---SEEKLELAKK----LG-----------ADHVINSS--------DSD 221 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CeEEEEeC---ChHHHHHHHH----hC-----------CcEEEEcC--------Cch
Confidence 8999999999999888887776 89999854 3444422222 01 12233321 111
Q ss_pred CCC-CCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCC
Q 016451 171 EIP-WGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (389)
Q Consensus 171 ~i~-W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISap 211 (389)
.+. ..+ -+|+++++.+ ..+.+.+-..++.|-+-|++-.|
T Consensus 222 ~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 222 ALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 111 111 1899999999 88888888888877766666655
No 256
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=59.56 E-value=3.4 Score=39.16 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.2
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
..||.|.|.|-+|..+++.|...+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G 44 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG 44 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999997765
No 257
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=59.20 E-value=48 Score=33.00 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=23.7
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaIN 120 (389)
+|.|.|.|.+|..+++.+...+ . .++++.
T Consensus 187 ~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~ 216 (365)
T cd08277 187 TVAVFGLGAVGLSAIMGAKIAG-ASRIIGVD 216 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 7899999999999999888776 6 466663
No 258
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=58.94 E-value=17 Score=37.89 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=34.1
Q ss_pred eeEEEec-cChhHHHHHHHHHcCC-CCcEEEEeCCCCCHHHHhhhh
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMF 133 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~-~~~iVaINd~~~~~~~layLl 133 (389)
.||.|.| +|-||.+.|+.+...+ .|+|+|+.- ....+.|+-+.
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~a-g~n~~~l~~q~ 46 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAA-GKNVELLAEQI 46 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEec-CCcHHHHHHHH
Confidence 4899999 9999999999998875 599999975 34556555444
No 259
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=58.93 E-value=14 Score=36.52 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=23.7
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC-CCcEEEE
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD-DVDVVAV 119 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~-~~~iVaI 119 (389)
+|||+|.|.|.||..+...|.+.+ ++.+++-
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r 36 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 469999999999999998888764 3444433
No 260
>PRK08655 prephenate dehydrogenase; Provisional
Probab=58.83 E-value=12 Score=39.22 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=24.9
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|||+|.| +|.||+.+.+.+.+++ .+|..++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEE
Confidence 4899998 9999999999998876 6666554
No 261
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=58.47 E-value=29 Score=36.52 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=52.6
Q ss_pred eeEEEecc----ChhHHHHHHHHHcCCCC--cEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEE
Q 016451 90 TKVGINGF----GRIGRLVLRVAAFRDDV--DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKV 163 (389)
Q Consensus 90 ikVgINGf----GrIGr~vlR~l~~r~~~--~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v 163 (389)
-+|+|+|. |.+|+.+++.+.+.+ | +|..||-- |+..+ |. ++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~------------~~~i~------------------G~--~~ 54 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPK------------AGEIL------------------GV--KA 54 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCC------------CCccC------------------Cc--cc
Confidence 47999995 889999999998775 5 67778731 12222 21 11
Q ss_pred EecCCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 164 FSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 164 ~~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
+ .+.+++| ..+|+++-+++.-...+..+...+.|+|.+||
T Consensus 55 ~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 55 Y--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred c--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 1 1233333 25788888888766666667777778887754
No 262
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=58.31 E-value=5.9 Score=38.23 Aligned_cols=99 Identities=22% Similarity=0.230 Sum_probs=49.8
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhccc-ccccccCceEEEecCCee-EEC-CEEEEEE
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYD-STHGVFKGTINVVDDSTL-EIN-GKLIKVF 164 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyD-SthGkf~~~v~~~~~~~L-~in-Gk~I~v~ 164 (389)
.-||.|.|.|-+|..+++.|...+ + +|.-|.+-.+++..+...+-|+ ..-|+.+-+.-.+ .| .+| .-.|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~---~l~~lnp~v~i~~~ 107 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARA---ALARINPHIAIETI 107 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHH---HHHHHCCCCEEEEE
Confidence 358999999999999999988765 3 2333332233444444333331 1224332211000 00 011 1112222
Q ss_pred ecC-CCCCCC--CCccCccEEEeccCCCCCHH
Q 016451 165 SKR-DPAEIP--WGDYGVDYVVESSGVFTTIA 193 (389)
Q Consensus 165 ~~~-dp~~i~--W~~~gvD~VvEsTG~f~t~e 193 (389)
..+ ++.+++ |. +.|+||+|+..+..+.
T Consensus 108 ~~~i~~~~~~~~~~--~~DiVi~~~D~~~~r~ 137 (245)
T PRK05690 108 NARLDDDELAALIA--GHDLVLDCTDNVATRN 137 (245)
T ss_pred eccCCHHHHHHHHh--cCCEEEecCCCHHHHH
Confidence 211 111111 33 7899999999886654
No 263
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=58.15 E-value=36 Score=33.13 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=54.3
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
+|-|.|.|.+|..+.+.+...+ .+++++.. +.+.+.++-+ +|- ...++.+...+. +...
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G-~~vi~~~~---~~~~~~~~~~----~g~-----------~~~i~~~~~~~~--~~~~ 224 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMG-FRTVAISR---GSDKADLARK----LGA-----------HHYIDTSKEDVA--EALQ 224 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEeC---ChHHHHHHHH----cCC-----------cEEecCCCccHH--HHHH
Confidence 6899999999999999988876 67777754 2334434322 121 011221110000 0011
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 171 ~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
.|+ ++|+++|++|.-...+.+..++..+.+-|.+.
T Consensus 225 --~~~--~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 225 --ELG--GAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred --hcC--CCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 132 68999999875556666777777666444443
No 264
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=58.13 E-value=16 Score=36.63 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=23.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCC-cEEEE
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~-~iVaI 119 (389)
.||+|.|.|.||..++-.|..++-. +|+-+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~Li 34 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLV 34 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 4999999999999998888776532 44444
No 265
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=58.12 E-value=12 Score=39.41 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=24.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
-+|+|.|+|.||+.+++.+...+ ..|+.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G-a~ViV~d 242 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG-ARVIVTE 242 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 37999999999999999998876 6755553
No 266
>PRK06545 prephenate dehydrogenase; Validated
Probab=58.04 E-value=13 Score=37.78 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=23.3
Q ss_pred eEEEeccChhHHHHHHHHHcCC-CCcEEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRD-DVDVVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~-~~~iVaI 119 (389)
||+|.|+|.||..+.+.+..++ ++.+...
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~ 31 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGY 31 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEe
Confidence 7999999999999999998875 3444443
No 267
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.81 E-value=61 Score=34.07 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=49.6
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC-CC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR-DP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~-dp 169 (389)
||.|.|+|..|+.+++.|..++ .++. +.|. +......++. . .| |+++... ++
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G-~~V~-~~D~--~~~~~~~~l~--~-------------------~g--i~~~~~~~~~ 69 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELG-CDVV-VADD--NETARHKLIE--V-------------------TG--VADISTAEAS 69 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CEEE-EECC--ChHHHHHHHH--h-------------------cC--cEEEeCCCch
Confidence 7999999999999999999887 4544 4452 2222222211 0 01 1122111 22
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
++++ +.|+||-+.|.-.+........+.|.
T Consensus 70 ~~~~----~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 70 DQLD----SFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred hHhc----CCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 2231 57899999998777666666666776
No 268
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.59 E-value=47 Score=34.96 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=48.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCC--CHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFI--DAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~--~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
-||+|.|+|+-|+.++|.|..++ .++ .+.|... +......|- . .+ +.++...
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g-~~v-~~~d~~~~~~~~~~~~l~----------------~------~~--~~~~~~~ 62 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL-PAQ-ALTLFCNAVEAREVGALA----------------D------AA--LLVETEA 62 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC-CEE-EEEcCCCcccchHHHHHh----------------h------cC--EEEeCCC
Confidence 38999999999999999999886 453 3455310 111000110 0 01 1111112
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
+++.+ . ++|+||-+.|.-.+.+......+.|.
T Consensus 63 ~~~~~--~--~~d~vV~SpgI~~~~p~~~~a~~~~i 94 (468)
T PRK04690 63 SAQRL--A--AFDVVVKSPGISPYRPEALAAAARGT 94 (468)
T ss_pred ChHHc--c--CCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 22223 2 57999999998877766666666665
No 269
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=57.55 E-value=87 Score=30.28 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=51.9
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|-|.+|..+++.+...+ .+ ++++-. +.+...++.+| |. . ..++.+.....+ .--
T Consensus 168 ~VlV~g~g~vg~~~~~la~~~g-~~~v~~~~~---s~~~~~~~~~~----g~-~----------~~~~~~~~~~~~-~i~ 227 (343)
T cd08235 168 TVLVIGAGPIGLLHAMLAKASG-ARKVIVSDL---NEFRLEFAKKL----GA-D----------YTIDAAEEDLVE-KVR 227 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC---CHHHHHHHHHh----CC-c----------EEecCCccCHHH-HHH
Confidence 7899999999999999887765 66 655532 44444444332 21 0 011111000000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
...+. .++|+||+|+|.-...+.+..+++.+.+-+.+
T Consensus 228 ~~~~~--~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 228 ELTDG--RGADVVIVATGSPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred HHhCC--cCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 01112 36899999998543445556777776643333
No 270
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=57.24 E-value=23 Score=37.04 Aligned_cols=32 Identities=16% Similarity=0.350 Sum_probs=28.0
Q ss_pred ceeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 89 ~ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.|||-|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 36899999 9999999999999986 78888853
No 271
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=57.20 E-value=22 Score=35.32 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=29.6
Q ss_pred eeEEEeccChhHHHHHHHHHcCCC---CcEEEEeCCCCCHHHHhhhh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDD---VDVVAVNDPFIDAKYMAYMF 133 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~---~~iVaINd~~~~~~~layLl 133 (389)
+|||+.|+|.+|+.+++-|..++. .+|. |.++ +.+...++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~--~~e~~~~l~ 45 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTNR--SEEKRAALA 45 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeCC--CHHHHHHHH
Confidence 589999999999999999998862 3444 4443 455554443
No 272
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=57.14 E-value=75 Score=31.10 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.8
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaIN 120 (389)
+|.|+|.|.+|+.+++.+...+ + .++++.
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~~ 204 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAG-ASKIIVSE 204 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 6899999999999999888876 6 565553
No 273
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=57.12 E-value=14 Score=36.11 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=27.3
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|||-|.| .|.||+.+.+.+.+++ +++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~-~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG-YEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS-EEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC-CEEEEeCc
Confidence 6999999 9999999999998865 88988854
No 274
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=57.00 E-value=33 Score=32.99 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=50.3
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|.|.+|+.+++.+...+ +. ++++.. +.+...++-++ |. + ..++.+...... +
T Consensus 162 ~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~---~~~~~~~~~~~----g~---~--------~~~~~~~~~~~~-~-- 219 (334)
T cd08234 162 SVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEP---NEEKLELAKKL----GA---T--------ETVDPSREDPEA-Q-- 219 (334)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC---CHHHHHHHHHh----CC---e--------EEecCCCCCHHH-H--
Confidence 7899999999999999888876 66 555532 34444443221 11 0 011110000000 0
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK 204 (389)
...+ ..++|++|+|+|.-...+.+..+++.+.+
T Consensus 220 ~~~~--~~~vd~v~~~~~~~~~~~~~~~~l~~~G~ 252 (334)
T cd08234 220 KEDN--PYGFDVVIEATGVPKTLEQAIEYARRGGT 252 (334)
T ss_pred HHhc--CCCCcEEEECCCChHHHHHHHHHHhcCCE
Confidence 0111 23799999999854455566677876664
No 275
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=56.90 E-value=12 Score=39.80 Aligned_cols=129 Identities=13% Similarity=0.210 Sum_probs=67.4
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecC-CeeEE---CCEEEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDD-STLEI---NGKLIKVFS 165 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~-~~L~i---nGk~I~v~~ 165 (389)
.+|||.|+|.+|..+.+.|.+++ ++|...|- +.+...-+.+..-..|. .+....+ ..+.- +-+.|-+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~v~dr---~~~~~~~l~~~~~~~g~---~i~~~~s~~e~v~~l~~~d~Iil~- 73 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKISVYNR---TYEKTEEFVKKAKEGNT---RVKGYHTLEELVNSLKKPRKVILL- 73 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEEEEeC---CHHHHHHHHHhhhhcCC---cceecCCHHHHHhcCCCCCEEEEE-
Confidence 48999999999999999999887 77766653 55554444321000010 0000000 00100 00111111
Q ss_pred cCCCC-------C-CCCCccCccEEEeccCCC-CCH-HHHHHHHHCCCCEEEEcCC-C-----C-CCCeEEeecCccCCC
Q 016451 166 KRDPA-------E-IPWGDYGVDYVVESSGVF-TTI-AKASAHMKGGAKKVVISAP-S-----A-DAPMFVVGVNEKTYK 228 (389)
Q Consensus 166 ~~dp~-------~-i~W~~~gvD~VvEsTG~f-~t~-e~a~~hl~aGaKkVIISap-s-----~-D~pt~V~GVN~~~y~ 228 (389)
..++. . ++--+ .-|++||++-.+ .+. +.+....+.|+ -.+.+| | + .-|++++|-+.+.|+
T Consensus 74 v~~~~~v~~vi~~l~~~L~-~g~iIID~gn~~~~dt~~r~~~l~~~Gi--~fldapVSGG~~gA~~G~~lm~GG~~~a~~ 150 (470)
T PTZ00142 74 IKAGEAVDETIDNLLPLLE-KGDIIIDGGNEWYLNTERRIKRCEEKGI--LYLGMGVSGGEEGARYGPSLMPGGNKEAYD 150 (470)
T ss_pred eCChHHHHHHHHHHHhhCC-CCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEcCCCCCCHHHHhcCCEEEEeCCHHHHH
Confidence 01110 0 11111 238999987654 332 34445556777 467777 2 1 256899999988775
Q ss_pred C
Q 016451 229 P 229 (389)
Q Consensus 229 ~ 229 (389)
.
T Consensus 151 ~ 151 (470)
T PTZ00142 151 H 151 (470)
T ss_pred H
Confidence 3
No 276
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=56.76 E-value=73 Score=29.76 Aligned_cols=85 Identities=25% Similarity=0.343 Sum_probs=49.5
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|.|.+|+.+++.+...+ +. ++++-. +.+.+..+-+ +|..+ .+ ++...
T Consensus 100 ~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~---~~~~~~~~~~----~g~~~---------~~-~~~~~--------- 152 (277)
T cd08255 100 RVAVVGLGLVGLLAAQLAKAAG-AREVVGVDP---DAARRELAEA----LGPAD---------PV-AADTA--------- 152 (277)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEECC---CHHHHHHHHH----cCCCc---------cc-cccch---------
Confidence 6899999999999999888776 66 777642 3344432222 22100 00 10000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK 204 (389)
.. +...++|++|+|+|.-...+.+..+++.+.+
T Consensus 153 ~~--~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~ 185 (277)
T cd08255 153 DE--IGGRGADVVIEASGSPSALETALRLLRDRGR 185 (277)
T ss_pred hh--hcCCCCCEEEEccCChHHHHHHHHHhcCCcE
Confidence 00 1223799999998865445556666666553
No 277
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.74 E-value=15 Score=35.69 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=28.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAY 131 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~lay 131 (389)
.||+|.|.|.+|..+...+..++ ++|+..+ .+++.+..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G-~~V~l~d---~~~~~~~~ 42 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG-YDVLLND---VSADRLEA 42 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CeEEEEe---CCHHHHHH
Confidence 58999999999999999988875 7766664 24554433
No 278
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=56.70 E-value=31 Score=34.53 Aligned_cols=89 Identities=19% Similarity=0.088 Sum_probs=56.9
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
-||-|.| +|.+|+.+++.+.+.+ + .+..||-.. -||. +.|. +++ +
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~g-~~~v~pVnp~~----------~~~~------------------v~G~--~~y--~ 55 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAYG-TNIVGGVTPGK----------GGTT------------------VLGL--PVF--N 55 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHCC-CCEEEEECCCC----------CCCe------------------EeCe--ecc--C
Confidence 5899999 9999999999998764 4 444677310 0111 1121 122 2
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE-cCCC
Q 016451 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI-SAPS 212 (389)
Q Consensus 168 dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII-Saps 212 (389)
+.+++|=.. ++|++|-+.+.....+-.+.-.+.|+|.+|| |+..
T Consensus 56 sv~dlp~~~-~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf 100 (291)
T PRK05678 56 TVAEAVEAT-GANASVIYVPPPFAADAILEAIDAGIDLIVCITEGI 100 (291)
T ss_pred CHHHHhhcc-CCCEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 334444211 2899999999877777777778889997544 6543
No 279
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=55.75 E-value=86 Score=30.35 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=49.9
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC--
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD-- 168 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d-- 168 (389)
+|.|+|.|.+|..+++.+...+ .+++.+-+ .+.+...++-+ +|. . ..++.+.........
T Consensus 164 ~VlI~g~g~vg~~~~~la~~~G-~~~v~~~~--~~~~~~~~~~~----~g~-~----------~~i~~~~~~~~~~~~~~ 225 (341)
T cd08262 164 VALVIGCGPIGLAVIAALKARG-VGPIVASD--FSPERRALALA----MGA-D----------IVVDPAADSPFAAWAAE 225 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEC--CCHHHHHHHHH----cCC-c----------EEEcCCCcCHHHHHHHH
Confidence 6889999999999998888776 66444443 23454544433 221 1 011110000000000
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK 204 (389)
-...+. .++|+|+||.|.......+..+++.+.+
T Consensus 226 ~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~ 259 (341)
T cd08262 226 LARAGG--PKPAVIFECVGAPGLIQQIIEGAPPGGR 259 (341)
T ss_pred HHHhCC--CCCCEEEECCCCHHHHHHHHHHhccCCE
Confidence 000112 3699999999864344555667776663
No 280
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=55.64 E-value=3.3 Score=41.85 Aligned_cols=22 Identities=27% Similarity=0.140 Sum_probs=19.8
Q ss_pred eEEEeccChhHHHHHHHHHcCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~ 112 (389)
||.|.|.|-+|-.+++.|...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG 22 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999998765
No 281
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=55.50 E-value=15 Score=38.06 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=30.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhc
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK 134 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlk 134 (389)
|||+|.|.|.+|..+...+. .+ +++++++ .+.+.+.-+.+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G-~~VigvD---~d~~kv~~l~~ 40 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QN-HEVVALD---ILPSRVAMLND 40 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hC-CcEEEEE---CCHHHHHHHHc
Confidence 38999999999999996554 45 8988886 36666655544
No 282
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=55.29 E-value=94 Score=30.75 Aligned_cols=95 Identities=24% Similarity=0.287 Sum_probs=51.6
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|.|.+|+.+++.+...+ +. ++++.. +.+..-++-+ +|. .-.++.+.... . +..
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~---s~~~~~~~~~----~g~-----------~~v~~~~~~~~-~-~~l 248 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDV---RDEKLAKAKE----LGA-----------THTVNAAKEDA-V-AAI 248 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHHHH----hCC-----------ceEecCCcccH-H-HHH
Confidence 6889999999999999998776 66 666643 2333323322 121 00111110000 0 000
Q ss_pred -CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 170 -AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 170 -~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
...+ ..++|+||+|+|.-...+.+..+++.+.+-|.+
T Consensus 249 ~~~~~--~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 249 REITG--GRGVDVVVEALGKPETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred HHHhC--CCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEE
Confidence 0111 236899999998642345566788777643334
No 283
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=55.20 E-value=4.7 Score=37.63 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=28.1
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHh
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMA 130 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~la 130 (389)
.-||.|.|.|-+|..+++.|...+ + +|..+.+-.++.+.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchh
Confidence 358999999999999999998775 4 3444443223444443
No 284
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=55.04 E-value=19 Score=31.06 Aligned_cols=31 Identities=35% Similarity=0.274 Sum_probs=23.7
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|+|.|.|.+|+.+++.+...+..++..++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~ 50 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVN 50 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEc
Confidence 4899999999999999999877522344443
No 285
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=55.03 E-value=44 Score=32.43 Aligned_cols=91 Identities=31% Similarity=0.353 Sum_probs=50.3
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|.|.+|+.+++.+...+ +. ++++.. +.+...++-+ +|. . ..++.+.... ++.
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~---~~~~~~~l~~----~g~-~----------~~~~~~~~~~---~~~ 219 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKILG-AKRVIAVDI---DDEKLAVARE----LGA-D----------DTINPKEEDV---EKV 219 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC---CHHHHHHHHH----cCC-C----------EEecCccccH---HHH
Confidence 7899999999999999888776 66 666643 2344433322 221 0 0111110000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK 204 (389)
..+. ...++|++++|+|.-...+.+..+++.+.+
T Consensus 220 ~~~~-~~~~~d~vld~~g~~~~~~~~~~~l~~~G~ 253 (343)
T cd08236 220 RELT-EGRGADLVIEAAGSPATIEQALALARPGGK 253 (343)
T ss_pred HHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 0000 112589999999865455666677776653
No 286
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=54.82 E-value=11 Score=37.62 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=27.0
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC--------CCcEEEEeCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD--------DVDVVAVNDP 122 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~--------~~~iVaINd~ 122 (389)
+++|+|+|.|-|||.+++.+.... .+.+|+|.|.
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 478999999999999998876421 3778888773
No 287
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=54.23 E-value=45 Score=33.75 Aligned_cols=29 Identities=21% Similarity=0.649 Sum_probs=24.3
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|.|.|.|.||...++.+...+ .+++++-
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~ 209 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFG-LRVTVIS 209 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcC-CeEEEEe
Confidence 6899999999999999888876 6676664
No 288
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=54.20 E-value=12 Score=37.19 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=33.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhccc
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYD 136 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyD 136 (389)
|+||.+|+||.|..+.|.+.+++ -++|+- | .+++....|-.|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~y-D--~n~~av~~~~~~g 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGY-D--VNQTAVEELKDEG 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEEE-c--CCHHHHHHHHhcC
Confidence 47999999999999999999886 777775 3 3566666665543
No 289
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=53.99 E-value=69 Score=31.36 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=23.1
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaI 119 (389)
+|.|+|-|.+|...++.+...+ .+ ++++
T Consensus 163 ~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~ 191 (347)
T PRK10309 163 NVIIIGAGTIGLLAIQCAVALG-AKSVTAI 191 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 7999999999999999888776 66 4455
No 290
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.83 E-value=22 Score=36.56 Aligned_cols=100 Identities=25% Similarity=0.190 Sum_probs=51.1
Q ss_pred CcceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec
Q 016451 87 DGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (389)
Q Consensus 87 ~m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~ 166 (389)
.+--||.|.|.|.||-..+..+..-+--+|| |-|+.-..=.+|..|-.|- -. ....+. .+...
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VV-i~d~~~~Rle~Ak~~Ga~~---------~~------~~~~~~-~~~~~ 230 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVV-ITDLVANRLELAKKFGATV---------TD------PSSHKS-SPQEL 230 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEE-EeecCHHHHHHHHHhCCeE---------Ee------eccccc-cHHHH
Confidence 3445899999999998877777655433444 3353211112222232111 00 000000 00000
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
++.-+--.++...|++|||||.-.+.+.|-..++.|=
T Consensus 231 ~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gG 267 (354)
T KOG0024|consen 231 AELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGG 267 (354)
T ss_pred HHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCC
Confidence 0000001223348999999999999988877776544
No 291
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=53.82 E-value=58 Score=35.23 Aligned_cols=36 Identities=25% Similarity=0.176 Sum_probs=27.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHH
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~l 129 (389)
-||.|.|.|.||...++.+...+ -+|+++ |. +++.+
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~-D~--~~~rl 201 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLG-AIVRAF-DT--RPEVA 201 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEE-eC--CHHHH
Confidence 58999999999999999998877 355544 53 45444
No 292
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=53.74 E-value=30 Score=34.59 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=28.2
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhh
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMF 133 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLl 133 (389)
+|.|+|.|.||...++.+...+ . +++++.. +.+.+.++.
T Consensus 188 ~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~---~~~~~~~a~ 227 (368)
T TIGR02818 188 TVAVFGLGGIGLSVIQGARMAK-ASRIIAIDI---NPAKFELAK 227 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEcC---CHHHHHHHH
Confidence 7999999999999999888776 5 5666632 344454443
No 293
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=53.56 E-value=36 Score=34.32 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.4
Q ss_pred ceeEEEecc-ChhHHHHHHHHHcCC
Q 016451 89 NTKVGINGF-GRIGRLVLRVAAFRD 112 (389)
Q Consensus 89 ~ikVgINGf-GrIGr~vlR~l~~r~ 112 (389)
+.||+|.|. |.||..++-.|..++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~ 26 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGE 26 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 359999997 999999998887654
No 294
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=53.56 E-value=37 Score=33.06 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=52.4
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEE-EEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL-IKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~-I~v~~~~dp 169 (389)
+|.|+|.|.+|+.+++.+...+ ++++++.. +.+..-.+.+ +|. . . .++.+. -.+ .+..
T Consensus 168 ~vlV~g~g~vg~~~~~~a~~~G-~~vi~~~~---~~~~~~~~~~----~g~-~---~-------~i~~~~~~~~--~~~~ 226 (345)
T cd08260 168 WVAVHGCGGVGLSAVMIASALG-ARVIAVDI---DDDKLELARE----LGA-V---A-------TVNASEVEDV--AAAV 226 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEeC---CHHHHHHHHH----hCC-C---E-------EEccccchhH--HHHH
Confidence 7999999999999999888775 78777643 3344433322 221 0 0 111110 000 0000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
..+.++ ++|++|+|+|.-.....+..+++.+.+-+.+
T Consensus 227 ~~~~~~--~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 227 RDLTGG--GAHVSVDALGIPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred HHHhCC--CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Confidence 111222 6899999998544445566777766643333
No 295
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=53.06 E-value=25 Score=33.00 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=25.8
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+||.|.| .|.||+.+++.|.+++ .+|+++.
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~ 48 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKG-FAVKAGV 48 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCC-CEEEEEe
Confidence 4899999 8999999999998875 6777664
No 296
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=52.87 E-value=24 Score=28.12 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
.+++|.|+|.+|+.+++.+.+..
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~ 46 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG 46 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 48999999999999999988763
No 297
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.49 E-value=34 Score=35.71 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=51.2
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHH---HHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAK---YMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~---~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~ 167 (389)
||+|.|+|+.|+.+++.|..++ .++ .+.|..-... .... | .-.| +.++...
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G-~~V-~~~D~~~~~~~~~~~~~-l---------------------~~~g--i~~~~~~ 69 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLG-AKV-TAFDKKSEEELGEVSNE-L---------------------KELG--VKLVLGE 69 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCC-CEE-EEECCCCCccchHHHHH-H---------------------HhCC--CEEEeCC
Confidence 8999999999999999999887 554 4455311000 0001 1 0011 1111111
Q ss_pred C-CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 168 D-PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 168 d-p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
+ ++++ .+.|+||-+.|.-.+.+......+.|.+ |++
T Consensus 70 ~~~~~~----~~~dlVV~Spgi~~~~p~~~~a~~~~i~--i~s 106 (458)
T PRK01710 70 NYLDKL----DGFDVIFKTPSMRIDSPELVKAKEEGAY--ITS 106 (458)
T ss_pred CChHHh----ccCCEEEECCCCCCCchHHHHHHHcCCc--EEe
Confidence 1 2223 2579999999987777767766777773 454
No 298
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=52.49 E-value=78 Score=31.54 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=23.4
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaI 119 (389)
+|.|+|-|.||...++.+...+ . .++++
T Consensus 189 ~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~ 217 (368)
T cd08300 189 TVAVFGLGAVGLAVIQGAKAAG-ASRIIGI 217 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 6999999999999999888776 5 46666
No 299
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=52.40 E-value=18 Score=37.06 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=29.2
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHH
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~l 129 (389)
+.+|-|.|+|++|+.+++.|.+++ .+++.|.. +++..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~-~~v~vid~---~~~~~ 267 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG-YSVKLIER---DPERA 267 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CeEEEEEC---CHHHH
Confidence 358999999999999999988865 78877843 55543
No 300
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=52.29 E-value=95 Score=30.51 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=24.2
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaIN 120 (389)
+|-|+|.|-+|..+++.+...+ . .++++.
T Consensus 180 ~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~ 209 (361)
T cd08231 180 TVVVQGAGPLGLYAVAAAKLAG-ARRVIVID 209 (361)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 6899999999999999888776 6 676664
No 301
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=52.27 E-value=54 Score=31.34 Aligned_cols=94 Identities=22% Similarity=0.226 Sum_probs=53.1
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|-|+| -|.+|..+++.+...+ +.++++.. +.+..-++-+ +|- . ..++.+... .+..
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~~----~g~-~----------~v~~~~~~~---~~~~ 206 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLG-YEVVASTG---KADAADYLKK----LGA-K----------EVIPREELQ---EESI 206 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC-CeEEEEec---CHHHHHHHHH----cCC-C----------EEEcchhHH---HHHH
Confidence 688999 4999999999998886 77777654 2333333322 121 0 011111100 0000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
.. +...++|+|+||+|. ...+.+-.++..+.+-+.+.
T Consensus 207 ~~--~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 207 KP--LEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred Hh--hccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEe
Confidence 01 122368999999997 45666677777666433443
No 302
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=52.22 E-value=31 Score=33.02 Aligned_cols=95 Identities=21% Similarity=0.241 Sum_probs=53.1
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
+|-|+|.|.+|+.+++.+...+ +.++++.. +.+...++-+ +|. . . .++.+.... .+. ..
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G-~~V~~~~~---s~~~~~~~~~----~g~-~-~---------~~~~~~~~~-~~~-~~ 226 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMG-AAVIAVDI---KEEKLELAKE----LGA-D-E---------VLNSLDDSP-KDK-KA 226 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CEEEEEcC---CHHHHHHHHH----hCC-C-E---------EEcCCCcCH-HHH-HH
Confidence 6888899999999999888776 77776643 3444433322 221 0 0 011000000 000 00
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 171 ~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
..+ ..++|+|++|.|.-...+.+..+++.|.+-+.+
T Consensus 227 ~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 227 AGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred Hhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 111 237999999998655566677888877744334
No 303
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=51.80 E-value=83 Score=31.28 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=23.9
Q ss_pred eEEEecc-ChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGINGF-GRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgINGf-GrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|.|+|- |.||..+++.+...+ .+++++-
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~ 190 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLHG-CYVVGSA 190 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEc
Confidence 6999995 999999999888776 6776653
No 304
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=51.77 E-value=6.2 Score=38.04 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.0
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
..||.|.|.|-+|..+++.|...+
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~G 47 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAG 47 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999998765
No 305
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=51.69 E-value=36 Score=33.91 Aligned_cols=95 Identities=21% Similarity=0.288 Sum_probs=52.1
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|-|.+|..+++.+...+ .+ ++++.. +.+....+-+ +|. . ..++.+...+. ...
T Consensus 189 ~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~---~~~k~~~~~~----~g~-~----------~~i~~~~~~~~--~~v 247 (365)
T cd08278 189 SIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDI---VDSRLELAKE----LGA-T----------HVINPKEEDLV--AAI 247 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHHHH----cCC-c----------EEecCCCcCHH--HHH
Confidence 6899999999999999888876 64 555543 2333322221 221 0 11111100000 001
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
.++. ..++|+|+||+|.-...+.+..+++.+.+-|.+
T Consensus 248 ~~~~--~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 248 REIT--GGGVDYALDTTGVPAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred HHHh--CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEe
Confidence 1111 247999999998644556677778777643333
No 306
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=51.59 E-value=16 Score=37.37 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=25.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|||.+.|.|.|||..+-.++.+...+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEE
Confidence 4899999999999777666666558888885
No 307
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.30 E-value=61 Score=33.30 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=49.3
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCC-H-HHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFID-A-KYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~-~-~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
+|.|.|.|++|+.++|.|.+++ .+|+. .|.... . ....+|-+ + | +.++...+
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G-~~V~~-~d~~~~~~~~~~~~l~~----~------------------g--~~~~~~~~ 60 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLG-ANVTV-NDGKPFSENPEAQELLE----E------------------G--IKVICGSH 60 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCC-CEEEE-EcCCCccchhHHHHHHh----c------------------C--CEEEeCCC
Confidence 6899999999999999999887 56444 453111 1 11111110 0 1 11111122
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
+.++. +.+.|+||-+.|.-.+........+.|.
T Consensus 61 ~~~~~--~~~~d~vV~s~gi~~~~~~~~~a~~~~i 93 (447)
T PRK02472 61 PLELL--DEDFDLMVKNPGIPYTNPMVEKALEKGI 93 (447)
T ss_pred CHHHh--cCcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 22221 1147999999998877766666667776
No 308
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=51.21 E-value=19 Score=37.45 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=25.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|+|.|+|.||+.+++.|...+-.+|+.+|-
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 48999999999999999998875245666664
No 309
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.98 E-value=19 Score=37.16 Aligned_cols=96 Identities=29% Similarity=0.365 Sum_probs=53.7
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEE--EEEecCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLI--KVFSKRD 168 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I--~v~~~~d 168 (389)
.++|.|+|-+|-.++.-+..++-=.|++| | ++++...+ --.+| .-+ .+|-+.. .+ +|.
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgv-D--iN~~Kf~~----ak~fG----aTe-------~iNp~d~~~~i-~ev- 254 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGV-D--INPDKFEK----AKEFG----ATE-------FINPKDLKKPI-QEV- 254 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcCcccEEEE-e--cCHHHHHH----HHhcC----cce-------ecChhhccccH-HHH-
Confidence 59999999999999988887776678887 3 23333211 11111 111 2222100 11 111
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCC-CCEEEE
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGG-AKKVVI 208 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aG-aKkVII 208 (389)
. +.-.+-|+||-|||+|.-.++..|-..-..| =+-|+|
T Consensus 255 i--~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 255 I--IEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred H--HHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 0 1112459999999999887776655444444 223454
No 310
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=50.92 E-value=1.5e+02 Score=27.79 Aligned_cols=87 Identities=26% Similarity=0.365 Sum_probs=52.4
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
.|.|.| .|.+|+.+.+.+...+ ..+.++.. +.+..-.+.+ +|- . ......+
T Consensus 135 ~vli~g~~~~~g~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~~----~g~-~---------~~~~~~~---------- 186 (305)
T cd08270 135 RVLVTGASGGVGRFAVQLAALAG-AHVVAVVG---SPARAEGLRE----LGA-A---------EVVVGGS---------- 186 (305)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHH----cCC-c---------EEEeccc----------
Confidence 688999 5999999999888776 67666643 3344433322 221 1 0111110
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
++...++|++++|+|.- ..+.+-.+++.+.+-|.+.
T Consensus 187 ---~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 187 ---ELSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSVG 222 (305)
T ss_pred ---cccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEEe
Confidence 01123799999999974 5566777888776444443
No 311
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=50.79 E-value=28 Score=35.16 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=27.0
Q ss_pred ceeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 89 ~ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+||.|-| .|-||+.+++.|.+++ .+|+++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG-HYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC-CEEEEEE
Confidence 35899999 8999999999999886 7888775
No 312
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=50.70 E-value=5.5 Score=37.35 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=23.9
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCc-EEEE
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVD-VVAV 119 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~-iVaI 119 (389)
..||+|.|.|-+|..++..|...+ +. |+-+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G-vg~i~lv 51 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG-IGKLILV 51 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEE
Confidence 468999999999999999988765 53 4434
No 313
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=50.46 E-value=20 Score=36.73 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=25.6
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
-||.|.|+|++|+.+++.+...+ .+|+.++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d 197 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTILD 197 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 47999999999999999998876 6766665
No 314
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=50.44 E-value=81 Score=30.51 Aligned_cols=91 Identities=24% Similarity=0.241 Sum_probs=50.9
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|.|.+|..+++.+..++ + .++++ + .+.+...++-+ +|.. .+..... . +.. .+
T Consensus 170 ~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~-~--~~~~~~~~~~~----~g~~--~~~~~~~-~--~~~---~l------ 227 (344)
T cd08284 170 TVAVIGCGPVGLCAVLSAQVLG-AARVFAV-D--PVPERLERAAA----LGAE--PINFEDA-E--PVE---RV------ 227 (344)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CceEEEE-c--CCHHHHHHHHH----hCCe--EEecCCc-C--HHH---HH------
Confidence 7899999999999999998886 5 67777 3 23344444333 2210 0110000 0 000 00
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK 204 (389)
.++. ...++|++|||+|.-...+.+..+++.+.+
T Consensus 228 ~~~~-~~~~~dvvid~~~~~~~~~~~~~~l~~~g~ 261 (344)
T cd08284 228 REAT-EGRGADVVLEAVGGAAALDLAFDLVRPGGV 261 (344)
T ss_pred HHHh-CCCCCCEEEECCCCHHHHHHHHHhcccCCE
Confidence 0000 123789999999864445566667766653
No 315
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=50.36 E-value=21 Score=34.40 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=23.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|||+|.|.|.||..+...|.+.+ .+|..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEEEe
Confidence 48999999999999999988765 4544443
No 316
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.32 E-value=73 Score=33.56 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.7
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
||.|.|+|+.|+.++|.|..++ .++.+ .|
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G-~~v~~-~D 37 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHG-ARLRV-AD 37 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCC-CEEEE-Ec
Confidence 7999999999999999999887 66554 45
No 317
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=50.12 E-value=16 Score=38.77 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=30.4
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhh
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMF 133 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLl 133 (389)
+|||.|+|++|+.+++.|.+++ ++|+..|. +++...-+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~v~dr---t~~~~~~l~ 39 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-FTVSVYNR---TPEKTDEFL 39 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-CeEEEEeC---CHHHHHHHH
Confidence 4899999999999999999886 78777664 455554444
No 318
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=49.78 E-value=32 Score=33.39 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=24.1
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|||-|-| .|-||+.+.+.|.+++ +++++.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~ 30 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIALD 30 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEec
Confidence 3899999 8999999999998886 456553
No 319
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=49.59 E-value=22 Score=34.50 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=26.4
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|||-|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILDN 32 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEec
Confidence 4799999 9999999999999876 78887753
No 320
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=49.33 E-value=23 Score=35.04 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=23.0
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEE
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaI 119 (389)
|.|||+|.|.|.||-.+.-.|...+ .++..|
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv 31 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAG-LPVRLI 31 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCC-CCeEEE
Confidence 4569999999999998877776654 444444
No 321
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.05 E-value=21 Score=36.69 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=25.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
-||.|.|+|.+|+.+++.|.+++ .+|++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G-~~V~g~D 33 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG-VYVIGVD 33 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC-CEEEEEe
Confidence 37999999999999999999887 5655554
No 322
>PLN02827 Alcohol dehydrogenase-like
Probab=48.92 E-value=45 Score=33.65 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=23.0
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaI 119 (389)
+|.|.|.|.||..+++.+...+ .. ++++
T Consensus 196 ~VlV~G~G~vG~~~iqlak~~G-~~~vi~~ 224 (378)
T PLN02827 196 SVVIFGLGTVGLSVAQGAKLRG-ASQIIGV 224 (378)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 7899999999999999888776 64 5555
No 323
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=48.82 E-value=1.1e+02 Score=29.64 Aligned_cols=95 Identities=21% Similarity=0.274 Sum_probs=51.7
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|-|+| -|.||..+++.+..++ .+++++-. +.+.+..+.+ +|- + ..++.+...... +..
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~---s~~~~~~~~~----lGa-~----------~vi~~~~~~~~~-~~~ 200 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAG---SDEKVAYLKK----LGF-D----------VAFNYKTVKSLE-ETL 200 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHH----cCC-C----------EEEeccccccHH-HHH
Confidence 689999 7999999999888776 67766643 3344434322 221 0 111111000000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
.... ..++|+||||+|.- ..+.+-.+++.|.+-|.+
T Consensus 201 ~~~~--~~gvdvv~d~~G~~-~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 201 KKAS--PDGYDCYFDNVGGE-FSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred HHhC--CCCeEEEEECCCHH-HHHHHHHHhCcCcEEEEe
Confidence 0111 13799999999964 335555667666643434
No 324
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=48.53 E-value=22 Score=39.24 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=26.0
Q ss_pred cceeEEEeccChhHHHHHHHHHcCC-CCcEEEEe
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRD-DVDVVAVN 120 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~-~~~iVaIN 120 (389)
|..||+|.|+|.+|+.+.+.+...+ ..+|++++
T Consensus 2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d 35 (735)
T PRK14806 2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVD 35 (735)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3358999999999999999998775 23566664
No 325
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=48.46 E-value=16 Score=37.99 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.9
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
+.+|||.|||..|+.+.+-+...+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcC
Confidence 579999999999999999988876
No 326
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=48.27 E-value=1.7e+02 Score=27.71 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=25.6
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
-+|.|+| .|.||..+++.+...+ .+++++.+
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G-~~v~~~~~ 172 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARG-INVINLVR 172 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCC-CeEEEEec
Confidence 3689998 7999999999988886 67777765
No 327
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=48.16 E-value=20 Score=37.45 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=28.6
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAY 131 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~lay 131 (389)
|||||.|.|.+|..+...+.+ . +++++++- +.+.+.-
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~-~~V~g~D~---~~~~ve~ 43 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-S-RQVVGFDV---NKKRILE 43 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-C-CEEEEEeC---CHHHHHH
Confidence 589999999999999888655 4 89988863 5555533
No 328
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=48.06 E-value=14 Score=35.64 Aligned_cols=100 Identities=16% Similarity=0.237 Sum_probs=49.8
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhccc-ccccccCceEEEecCCee-EEC-CEEEEEEec
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYD-STHGVFKGTINVVDDSTL-EIN-GKLIKVFSK 166 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyD-SthGkf~~~v~~~~~~~L-~in-Gk~I~v~~~ 166 (389)
||.|.|.|-+|-.+++.|...+ +. |+-|.+-.++...+-..|-|+ ..-|+.+.++-.+ .| .+| +-+|....+
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~---~l~~~np~v~i~~~~~ 76 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAE---AVNDRNPNCKVVPYQN 76 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHH---HHHHHCCCCEEEEEec
Confidence 6899999999999999987664 22 222322123444443333332 2235544332110 00 011 111222221
Q ss_pred C-CC-CCCC---CCccCccEEEeccCCCCCHHHHH
Q 016451 167 R-DP-AEIP---WGDYGVDYVVESSGVFTTIAKAS 196 (389)
Q Consensus 167 ~-dp-~~i~---W~~~gvD~VvEsTG~f~t~e~a~ 196 (389)
+ ++ .+++ |+ +.|+||+|+..+..+....
T Consensus 77 ~i~~~~~~~~~f~~--~~DvVi~a~Dn~~aR~~ln 109 (234)
T cd01484 77 KVGPEQDFNDTFFE--QFHIIVNALDNIIARRYVN 109 (234)
T ss_pred cCChhhhchHHHHh--CCCEEEECCCCHHHHHHHH
Confidence 1 00 1111 33 7899999999887665443
No 329
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=47.81 E-value=1.1e+02 Score=29.92 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=23.9
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|.|+| .|.+|..+++.+..++ .+++++-
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~ 183 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKG-CYVVGSA 183 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEe
Confidence 689999 5999999999888876 6766654
No 330
>PLN02702 L-idonate 5-dehydrogenase
Probab=47.66 E-value=44 Score=33.04 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=51.7
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec-CCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK-RDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~-~dp 169 (389)
+|.|+|-|.+|..+++.+...+ ...+.+-+. +.+.+..+-+ +|- + . .+.++.+.....+. ...
T Consensus 184 ~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~--~~~~~~~~~~----~g~-~-~-------~~~~~~~~~~~~~~~~~~ 247 (364)
T PLN02702 184 NVLVMGAGPIGLVTMLAARAFG-APRIVIVDV--DDERLSVAKQ----LGA-D-E-------IVLVSTNIEDVESEVEEI 247 (364)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEECC--CHHHHHHHHH----hCC-C-E-------EEecCcccccHHHHHHHH
Confidence 7899999999999999888776 553333342 3333332222 221 0 0 11111110000000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
.+. .+ .++|+||||+|.-...+.+..+++.+.+-|++
T Consensus 248 ~~~-~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 248 QKA-MG-GGIDVSFDCVGFNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred hhh-cC-CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 001 11 26899999999644566777888877643333
No 331
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=47.66 E-value=87 Score=32.60 Aligned_cols=87 Identities=22% Similarity=0.232 Sum_probs=53.1
Q ss_pred eEEEeccChhHHH-HHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRL-VLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~-vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
||.|.|.|..|+. ++|.|.+++ .++ .+.|.. ..+.+..|-+ . | +.++...++
T Consensus 9 ~v~viG~G~sG~s~~a~~L~~~G-~~V-~~~D~~-~~~~~~~l~~-----------------~-----g--i~~~~~~~~ 61 (461)
T PRK00421 9 RIHFVGIGGIGMSGLAEVLLNLG-YKV-SGSDLK-ESAVTQRLLE-----------------L-----G--AIIFIGHDA 61 (461)
T ss_pred EEEEEEEchhhHHHHHHHHHhCC-CeE-EEECCC-CChHHHHHHH-----------------C-----C--CEEeCCCCH
Confidence 7999999999999 799999887 564 455632 2122222211 0 1 112111233
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISa 210 (389)
+.+. +.|+||-+.|.-.+.+......+.|. -|++-
T Consensus 62 ~~~~----~~d~vv~spgi~~~~~~~~~a~~~~i--~i~~~ 96 (461)
T PRK00421 62 ENIK----DADVVVYSSAIPDDNPELVAARELGI--PVVRR 96 (461)
T ss_pred HHCC----CCCEEEECCCCCCCCHHHHHHHHCCC--cEEeH
Confidence 3332 57999999999877766666667776 35543
No 332
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=47.62 E-value=72 Score=29.04 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=23.8
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|.|+|.|.+|+.+++.+...+ .+++++.
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~g-~~v~~~~ 165 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAAG-ARVIVTD 165 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEc
Confidence 7999997779999999888776 6776664
No 333
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=47.54 E-value=65 Score=34.93 Aligned_cols=151 Identities=15% Similarity=0.107 Sum_probs=72.7
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
-||.|.|.|++|+..++.+...+ ..++++ |. +.+.+...-++.-.+-.++. . +++ =.-+|..-.+.++...
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG-A~V~v~-d~--~~~rle~a~~lGa~~v~v~~--~-e~g--~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG-AIVRAF-DT--RPEVKEQVQSMGAEFLELDF--K-EEG--GSGDGYAKVMSEEFIA 235 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eC--CHHHHHHHHHcCCeEEeccc--c-ccc--cccccceeecCHHHHH
Confidence 48999999999999999988876 344443 42 44444322222111100110 0 000 0011222222211110
Q ss_pred ---CCCCCCccCccEEEecc---CC----CCCHHHHHHHHHCCCCEEEEcCC---CCC------CCeEEe--ecCccCCC
Q 016451 170 ---AEIPWGDYGVDYVVESS---GV----FTTIAKASAHMKGGAKKVVISAP---SAD------APMFVV--GVNEKTYK 228 (389)
Q Consensus 170 ---~~i~W~~~gvD~VvEsT---G~----f~t~e~a~~hl~aGaKkVIISap---s~D------~pt~V~--GVN~~~y~ 228 (389)
+.++=.-.++|+||.|. |. +++.+. -.-++.|. ||+.-. .-+ .++++. ||.+--++
T Consensus 236 ~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~em-v~~MKpGs--vIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~gv~ 312 (511)
T TIGR00561 236 AEMELFAAQAKEVDIIITTALIPGKPAPKLITEEM-VDSMKAGS--VIVDLAAEQGGNCEYTKPGEVYTTENQVKVIGYT 312 (511)
T ss_pred HHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHH-HhhCCCCC--EEEEeeeCCCCCEEEecCceEEEecCCEEEEeeC
Confidence 00110013699999999 64 355554 45677787 777322 111 356664 46665665
Q ss_pred CCCCeEec--CChhhhhhHHHHHHHH
Q 016451 229 PNMNIVSN--ASCTTNCLAPLAKVVH 252 (389)
Q Consensus 229 ~~~~IISn--aSCTTncLAPvlkvL~ 252 (389)
+-..-+.. .-=-.+.|.+.++-|-
T Consensus 313 nlPs~~p~~AS~l~s~nl~~~l~~l~ 338 (511)
T TIGR00561 313 DLPSRLPTQSSQLYGTNLVNLLKLLC 338 (511)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHH
Confidence 41111111 1123456777777774
No 334
>PRK10083 putative oxidoreductase; Provisional
Probab=47.42 E-value=74 Score=30.78 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=50.2
Q ss_pred eEEEeccChhHHHHHHHHHc-CCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAF-RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~-r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|-|-+|..+++.+.. .+ ..++.+-+ .+.+.+..+.+ +|. +. .++-+.-.+ . +..
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~--~~~~~~~~~~~----~Ga-~~----------~i~~~~~~~-~-~~~ 222 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYN-VKAVIVAD--RIDERLALAKE----SGA-DW----------VINNAQEPL-G-EAL 222 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHhCC-CCEEEEEc--CCHHHHHHHHH----hCC-cE----------EecCccccH-H-HHH
Confidence 78999999999999888764 35 55333333 24455533332 221 10 111110000 0 001
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
.... .++|+||||+|.-.....+..+++.|.+-+.+
T Consensus 223 ~~~g---~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 223 EEKG---IKPTLIIDAACHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred hcCC---CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 1111 24689999999644456666777776644444
No 335
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.42 E-value=25 Score=35.63 Aligned_cols=35 Identities=31% Similarity=0.266 Sum_probs=27.2
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHH
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~l 129 (389)
||||+|.|.||+.+...+...+ ++++.. |+ +++.+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG-~~V~l~-D~--~~~~~ 43 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHG-LDVVAW-DP--APGAE 43 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCC-CeEEEE-eC--CHHHH
Confidence 7999999999999999888776 786655 43 44443
No 336
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=47.39 E-value=95 Score=29.46 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=49.2
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+| .|.+|..+++.+...+ .+++++.. +.+...++.++ |- ...++.+... .+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~~~----g~-----------~~~~~~~~~~----~~~ 205 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG-YTVVALTG---KEEQADYLKSL----GA-----------SEVLDREDLL----DES 205 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHhc----CC-----------cEEEcchhHH----HHH
Confidence 689999 5999999999888776 66555432 33444444332 21 0111111000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
.+ .+...++|+|++|+|. ...+.+..++..+.
T Consensus 206 ~~-~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g 237 (325)
T cd05280 206 KK-PLLKARWAGAIDTVGG-DVLANLLKQTKYGG 237 (325)
T ss_pred HH-HhcCCCccEEEECCch-HHHHHHHHhhcCCC
Confidence 00 0122368999999997 45566666776554
No 337
>PRK08219 short chain dehydrogenase; Provisional
Probab=47.28 E-value=26 Score=31.55 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=25.3
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.++-|.| .|.||+.+++.|.++ .+++++..
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r 34 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT--HTLLLGGR 34 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh--CCEEEEeC
Confidence 4789999 999999999999877 67777753
No 338
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=47.22 E-value=32 Score=34.01 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=26.6
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+||-|.| .|.||+.+++.|.+++ .+|+++.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r 42 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG-YTVHATLR 42 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 4899999 9999999999999886 78877643
No 339
>PLN00106 malate dehydrogenase
Probab=46.95 E-value=27 Score=35.40 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=71.2
Q ss_pred eeEEEecc-ChhHHHHHHHHHcCCCC-cEEEE--eCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEE-EE
Q 016451 90 TKVGINGF-GRIGRLVLRVAAFRDDV-DVVAV--NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK-VF 164 (389)
Q Consensus 90 ikVgINGf-GrIGr~vlR~l~~r~~~-~iVaI--Nd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~-v~ 164 (389)
.||+|.|. |+||..+...|..++-. +|+-+ |.+ ..+ .-|-.|+... . .+. +.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~--~g~------a~Dl~~~~~~----------~-----~i~~~~ 75 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT--PGV------AADVSHINTP----------A-----QVRGFL 75 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC--Cee------EchhhhCCcC----------c-----eEEEEe
Confidence 39999997 99999999988866532 34333 221 110 0011111110 0 111 11
Q ss_pred ecCCC-CCCCCCccCccEEEeccCCCCC----HH------------HHHHHHHCCCCEEEE--cCCCCC-CCeEEeecCc
Q 016451 165 SKRDP-AEIPWGDYGVDYVVESSGVFTT----IA------------KASAHMKGGAKKVVI--SAPSAD-APMFVVGVNE 224 (389)
Q Consensus 165 ~~~dp-~~i~W~~~gvD~VvEsTG~f~t----~e------------~a~~hl~aGaKkVII--Saps~D-~pt~V~GVN~ 224 (389)
...++ +.+ .++|+||-+.|.-.. +. -++.-.+.+.+.+|| |+|... .|.+.+-+-.
T Consensus 76 ~~~d~~~~l----~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~ 151 (323)
T PLN00106 76 GDDQLGDAL----KGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKK 151 (323)
T ss_pred CCCCHHHHc----CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHH
Confidence 11111 112 379999999987433 22 222333456565554 777531 2322221211
Q ss_pred -cCCCCCCCeEecCChhhhhhHHHHHHHHhhcCceE
Q 016451 225 -KTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILE 259 (389)
Q Consensus 225 -~~y~~~~~IISnaSCTTncLAPvlkvL~d~fGI~~ 259 (389)
..+. .++++.-.. -=.+.+-..|.+++|+.-
T Consensus 152 ~s~~p-~~~viG~~~---LDs~Rl~~~lA~~lgv~~ 183 (323)
T PLN00106 152 AGVYD-PKKLFGVTT---LDVVRANTFVAEKKGLDP 183 (323)
T ss_pred cCCCC-cceEEEEec---chHHHHHHHHHHHhCCCh
Confidence 1222 367887742 344577888899999863
No 340
>PRK07877 hypothetical protein; Provisional
Probab=46.82 E-value=7.2 Score=43.74 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=52.7
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCC--cEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECC-EEEEEEe
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDV--DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEING-KLIKVFS 165 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~--~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inG-k~I~v~~ 165 (389)
.-||+|.|.| +|-.++..|...+ + +|.-|-.-.+++..+=..+--.+.-|+.+-++-.+ .-..+|- -+|..+.
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraG-vvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~--~l~~inp~i~v~~~~ 182 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEG-LCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAAR--RIAELDPYLPVEVFT 182 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHcc-CCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHH--HHHHHCCCCEEEEEe
Confidence 4689999999 8999988877554 2 22222111122222222211112235443221110 0111221 2344443
Q ss_pred cC-CCCCCCCCccCccEEEeccCCCCCHHHHH-HHHHCCC
Q 016451 166 KR-DPAEIPWGDYGVDYVVESSGVFTTIAKAS-AHMKGGA 203 (389)
Q Consensus 166 ~~-dp~~i~W~~~gvD~VvEsTG~f~t~e~a~-~hl~aGa 203 (389)
+. ++++++=--.++|+||||+..|.++-... ...+.|.
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i 222 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI 222 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 32 22222200126899999999997765443 2234444
No 341
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=46.81 E-value=30 Score=36.77 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.7
Q ss_pred ceeEEEecc-ChhHHHHHHHHHcC
Q 016451 89 NTKVGINGF-GRIGRLVLRVAAFR 111 (389)
Q Consensus 89 ~ikVgINGf-GrIGr~vlR~l~~r 111 (389)
++||+|.|. |.||-.++-.|..+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 589999997 99999999988876
No 342
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=46.76 E-value=31 Score=30.95 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=25.9
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+.||.|.|.|++|+..++++..-+ .+++.+.+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~ 51 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDE 51 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC-CEEEeccC
Confidence 369999999999999999998887 77777754
No 343
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=46.66 E-value=97 Score=29.62 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=50.3
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+| .|.+|..+++.+...+ .+++++.. +.+...++.+ .+|. ...+.. .. ... . +..
T Consensus 148 ~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~---~~~~~~~~~~---~~g~-~~~~~~--------~~--~~~-~-~~v 207 (329)
T cd05288 148 TVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAG---SDEKCRWLVE---ELGF-DAAINY--------KT--PDL-A-EAL 207 (329)
T ss_pred EEEEecCcchHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHh---hcCC-ceEEec--------CC--hhH-H-HHH
Confidence 688999 7999999999888776 67766643 3344444432 1221 001110 00 000 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK 204 (389)
.+ +...++|++|||+|.. ..+.+-.+++.+.+
T Consensus 208 ~~--~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~ 239 (329)
T cd05288 208 KE--AAPDGIDVYFDNVGGE-ILDAALTLLNKGGR 239 (329)
T ss_pred HH--hccCCceEEEEcchHH-HHHHHHHhcCCCce
Confidence 11 1123799999999973 45556667766653
No 344
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=46.16 E-value=33 Score=31.68 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=22.1
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCH
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDA 126 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~ 126 (389)
++.|.|||.+||-+++.|...+ . -|.|-| +||
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~G-a-~V~V~e--~DP 56 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLG-A-RVTVTE--IDP 56 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT---EEEEE---SSH
T ss_pred EEEEeCCCcccHHHHHHHhhCC-C-EEEEEE--CCh
Confidence 6899999999999999998876 2 234555 355
No 345
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.98 E-value=28 Score=33.94 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=24.6
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.||+|.|.|.+|..+...+...+ .+|+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G-~~V~l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG-FDVTIYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC-CeEEEEe
Confidence 48999999999999999888765 6666553
No 346
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.91 E-value=29 Score=35.02 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=24.6
Q ss_pred ceeEEEecc-ChhHHHHHHHHHcCCC------CcEEEE
Q 016451 89 NTKVGINGF-GRIGRLVLRVAAFRDD------VDVVAV 119 (389)
Q Consensus 89 ~ikVgINGf-GrIGr~vlR~l~~r~~------~~iVaI 119 (389)
++||+|.|- |.||..+++.|..++- .+|+.+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~ 39 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL 39 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE
Confidence 468999995 9999999999987542 266666
No 347
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=45.91 E-value=63 Score=31.55 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.6
Q ss_pred Eec-cChhHHHHHHHHHcCCC
Q 016451 94 ING-FGRIGRLVLRVAAFRDD 113 (389)
Q Consensus 94 ING-fGrIGr~vlR~l~~r~~ 113 (389)
|-| .|.+|+.+++.|+++++
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~ 22 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGY 22 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCC
Confidence 456 99999999999999985
No 348
>PLN02206 UDP-glucuronate decarboxylase
Probab=45.88 E-value=24 Score=36.96 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=27.3
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+||-|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~ 151 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDN 151 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCc-CEEEEEeC
Confidence 6899999 9999999999999986 68888753
No 349
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.61 E-value=80 Score=32.62 Aligned_cols=85 Identities=16% Similarity=0.138 Sum_probs=50.0
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEe-cCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS-KRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~-~~dp 169 (389)
-|.|.|.|.+|+.++|.|.+++ .+ |.+.|....+.....|-+ . .-| +.+.. ..++
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G-~~-v~~~D~~~~~~~~~~l~~-----------------~---~~g--~~~~~~~~~~ 63 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG-IP-FAVMDSREQPPGLDTLAR-----------------E---FPD--VELRCGGFDC 63 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC-Ce-EEEEeCCCCchhHHHHHh-----------------h---cCC--cEEEeCCCCh
Confidence 4899999999999999999987 55 445663111111111100 0 001 22221 1234
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
+.++ +.|+||-+.|.-.+.+......+.|.
T Consensus 64 ~~~~----~~d~vV~sp~i~~~~p~~~~a~~~~i 93 (448)
T PRK03803 64 ELLV----QASEIIISPGLALDTPALRAAAAMGI 93 (448)
T ss_pred HHhc----CCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 4442 57999999998777666666666776
No 350
>PLN02240 UDP-glucose 4-epimerase
Probab=45.40 E-value=30 Score=33.76 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=27.3
Q ss_pred ceeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 89 ~ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
..||-|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDN 37 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 35899999 9999999999999886 78888753
No 351
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=45.39 E-value=1.4e+02 Score=30.45 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=24.0
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+|.|.|.|.||..+++.+...+ ..++.+.|
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d 217 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLG-AAVVIVGD 217 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CceEEEeC
Confidence 6888999999999999888776 66555555
No 352
>PRK09291 short chain dehydrogenase; Provisional
Probab=45.35 E-value=30 Score=31.88 Aligned_cols=31 Identities=26% Similarity=0.185 Sum_probs=26.0
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|-|.| .|.||+.+++.|.+++ ..++++..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG-HNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 4688999 9999999999999886 77777643
No 353
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=44.54 E-value=72 Score=30.82 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=25.4
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
++.|.|.|.+||.+++.+.+.+ .+|..+|.
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g-~~v~v~~R 148 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKAD-CNVIIANR 148 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 7899999999999999998876 57666664
No 354
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=44.52 E-value=78 Score=30.35 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=53.5
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+| .|.+|+.+++.+...+..+++++.. +.+..-++-+ +|- . ..++.+. .. . +..
T Consensus 152 ~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~---~~~~~~~~~~----~g~-~----------~~~~~~~-~~-~-~~i 210 (336)
T cd08252 152 TLLIIGGAGGVGSIAIQLAKQLTGLTVIATAS---RPESIAWVKE----LGA-D----------HVINHHQ-DL-A-EQL 210 (336)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCcEEEEEcC---ChhhHHHHHh----cCC-c----------EEEeCCc-cH-H-HHH
Confidence 689999 7999999999888776467766643 2333333322 221 0 0111110 00 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
....+ .++|++++|+|.-...+.+..++..+.+-+.++
T Consensus 211 ~~~~~--~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 211 EALGI--EPVDYIFCLTDTDQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred HhhCC--CCCCEEEEccCcHHHHHHHHHHhcCCCEEEEec
Confidence 11122 379999999986445566667777666433343
No 355
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=44.49 E-value=71 Score=30.84 Aligned_cols=96 Identities=22% Similarity=0.336 Sum_probs=51.4
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
+|.|.|-|.+|..+++.+...+...++++.. +.+....+-+ +|- +. .++.+.. + . ++..
T Consensus 170 ~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~----~g~-~~----------~~~~~~~-~-~-~~i~ 228 (340)
T cd05284 170 TVVVIGVGGLGHIAVQILRALTPATVIAVDR---SEEALKLAER----LGA-DH----------VLNASDD-V-V-EEVR 228 (340)
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHH----hCC-cE----------EEcCCcc-H-H-HHHH
Confidence 6899997779999999888765467777643 2333323322 221 10 1111100 0 0 0000
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 171 ~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
++. ...++|+|+||+|.-...+.+-.++..+.+-+.+
T Consensus 229 ~~~-~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 229 ELT-GGRGADAVIDFVGSDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred HHh-CCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEE
Confidence 000 1136899999999634455566677766643333
No 356
>PRK06046 alanine dehydrogenase; Validated
Probab=44.20 E-value=32 Score=34.51 Aligned_cols=38 Identities=29% Similarity=0.227 Sum_probs=30.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHH
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~l 129 (389)
.+|||.|.|.+|+..++.+...+.++.+.|-++ +++..
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r--~~~~~ 167 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR--TKSSA 167 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECC--CHHHH
Confidence 589999999999999999886556999998885 44433
No 357
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=44.10 E-value=24 Score=37.84 Aligned_cols=129 Identities=15% Similarity=0.233 Sum_probs=69.6
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccc-----cCceEEEecCCeeEECCEEEEEE
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGV-----FKGTINVVDDSTLEINGKLIKVF 164 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGk-----f~~~v~~~~~~~L~inGk~I~v~ 164 (389)
.+||++|+|.+|+.+.+.|.+++ ++|+.-|- +++...-+.+--...|. .....++.. .| .+-.+-++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G-~~V~V~NR---t~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~--~l--~~~dvIi~ 78 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKG-FPISVYNR---TTSKVDETVERAKKEGNLPLYGFKDPEDFVL--SI--QKPRSVII 78 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCC-CeEEEECC---CHHHHHHHHHhhhhcCCcccccCCCHHHHHh--cC--CCCCEEEE
Confidence 48999999999999999999887 88776664 44443333220000020 000000000 00 00111111
Q ss_pred ecCCCCC--------CCCCccCccEEEeccCCC--CCHHHHHHHHHCCCCEEEEcCC-C-----C-CCCeEEeecCccCC
Q 016451 165 SKRDPAE--------IPWGDYGVDYVVESSGVF--TTIAKASAHMKGGAKKVVISAP-S-----A-DAPMFVVGVNEKTY 227 (389)
Q Consensus 165 ~~~dp~~--------i~W~~~gvD~VvEsTG~f--~t~e~a~~hl~aGaKkVIISap-s-----~-D~pt~V~GVN~~~y 227 (389)
--.+++. ++--+ .-|++||++-.. .+.+.++.+.+.|+ -.|.+| + + .-|++++|-+.+.|
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~-~G~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~~a~ 155 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYME-PGDCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSFEAY 155 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcC-CCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCHHHH
Confidence 1122211 12111 238999998775 34455556666788 467777 2 1 35699999998887
Q ss_pred CC
Q 016451 228 KP 229 (389)
Q Consensus 228 ~~ 229 (389)
+.
T Consensus 156 ~~ 157 (493)
T PLN02350 156 KN 157 (493)
T ss_pred HH
Confidence 54
No 358
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=44.02 E-value=1e+02 Score=34.87 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=49.7
Q ss_pred eEEEeccChhHHHH-HHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLV-LRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~v-lR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|.|.|.+|+.. +|.|.+++ .++ .+.|.. ....+..|-+ + | |.++...++
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G-~~V-~~sD~~-~~~~~~~L~~----~------------------g--i~~~~g~~~ 58 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG-YSV-SGSDLS-EGKTVEKLKA----K------------------G--ARFFLGHQE 58 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC-CeE-EEECCC-CChHHHHHHH----C------------------C--CEEeCCCCH
Confidence 59999999999997 89998887 564 456642 2222333211 0 1 111111222
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
+.++ +.|+||-+.|.-.+.+......+.|.
T Consensus 59 ~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 88 (809)
T PRK14573 59 EHVP----EDAVVVYSSSISKDNVEYLSAKSRGN 88 (809)
T ss_pred HHcC----CCCEEEECCCcCCCCHHHHHHHHCCC
Confidence 2221 57999999998877666666666666
No 359
>PRK05866 short chain dehydrogenase; Provisional
Probab=43.70 E-value=48 Score=32.12 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=24.9
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|-|.| .|-||+.+++.+.+++ .+|+.+.
T Consensus 41 k~vlItGasggIG~~la~~La~~G-~~Vi~~~ 71 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRG-ATVVAVA 71 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 3688999 8999999999998876 6776664
No 360
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.98 E-value=1.1e+02 Score=31.36 Aligned_cols=86 Identities=21% Similarity=0.224 Sum_probs=51.7
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec-CCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK-RDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~-~dp 169 (389)
+|.|.|+|..|+..++.|..++ .++.+ .|....+.... .|. .| +.++.. .++
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G-~~v~~-~D~~~~~~~~~----------------------~l~-~g--~~~~~~~~~~ 60 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARG-VTPRV-IDTRITPPGLD----------------------KLP-EN--VERHTGSLND 60 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCC-CeEEE-EcCCCCchhHH----------------------HHh-cC--CEEEeCCCCH
Confidence 7999999999999999888776 56554 44211110000 110 02 112111 122
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
..+ . +.|+||-+.|.-.+.+......+.|++ |++
T Consensus 61 ~~~--~--~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~ 94 (438)
T PRK03806 61 EWL--L--AADLIVASPGIALAHPSLSAAADAGIE--IVG 94 (438)
T ss_pred HHh--c--CCCEEEECCCCCCCCHHHHHHHHCCCe--EEE
Confidence 222 1 468999999987777777777888984 554
No 361
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=42.87 E-value=26 Score=34.44 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=21.1
Q ss_pred EEEeccChhHHHHHHHHHcCCCCcEEEE
Q 016451 92 VGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 92 VgINGfGrIGr~vlR~l~~r~~~~iVaI 119 (389)
|+|.|.|.+|..+...+..++-.+|+-+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~ 28 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLL 28 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 6899999999999887776541265555
No 362
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=42.79 E-value=1.5e+02 Score=28.92 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=22.8
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaI 119 (389)
+|-|+|.|.||..+++.+...+ .+ ++++
T Consensus 169 ~vlI~g~g~iG~~~~~lak~~G-~~~v~~~ 197 (351)
T cd08285 169 TVAVFGIGPVGLMAVAGARLRG-AGRIIAV 197 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 7899999999999999887776 54 5554
No 363
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=42.52 E-value=11 Score=38.78 Aligned_cols=111 Identities=20% Similarity=0.208 Sum_probs=55.1
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhccc-ccccccCceEEEe----cCCeeEECCEEEE
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYD-STHGVFKGTINVV----DDSTLEINGKLIK 162 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyD-SthGkf~~~v~~~----~~~~L~inGk~I~ 162 (389)
..||.|.|.|-+|..+++.|...+ + +|.-|.+-.+++..+-..+-|+ +.-|+.+.+.-.+ -+..+.+....-+
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 119 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER 119 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee
Confidence 458999999999999999998765 3 3333433233444444333232 1123322111000 0111222111111
Q ss_pred EEecCCCCCCCCCccCccEEEeccCCCCCHHHHH-HHHHCCCC
Q 016451 163 VFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKAS-AHMKGGAK 204 (389)
Q Consensus 163 v~~~~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~-~hl~aGaK 204 (389)
+ +++++.---.++|+||+|+..|.++.... ...+.|..
T Consensus 120 i----~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP 158 (370)
T PRK05600 120 L----TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTP 158 (370)
T ss_pred c----CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 2 11111100136899999999998775433 23345553
No 364
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.28 E-value=1.6e+02 Score=30.32 Aligned_cols=87 Identities=20% Similarity=0.291 Sum_probs=51.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
.+|.|.|.|.+|+.++|.|.+++ ..+++. |....++....|-+ . ..| +.++....+
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g-~~v~~~-d~~~~~~~~~~l~~-------------------~-~~g--i~~~~g~~~ 61 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG-AEVAAY-DAELKPERVAQIGK-------------------M-FDG--LVFYTGRLK 61 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eCCCCchhHHHHhh-------------------c-cCC--cEEEeCCCC
Confidence 37999999999999999999887 665544 42111111111100 0 001 222221212
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
..+ + .+.|+||-+.|.-.+........+.|.
T Consensus 62 ~~~-~--~~~d~vv~spgi~~~~p~~~~a~~~~i 92 (445)
T PRK04308 62 DAL-D--NGFDILALSPGISERQPDIEAFKQNGG 92 (445)
T ss_pred HHH-H--hCCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 111 1 267999999999877777776667776
No 365
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=41.86 E-value=58 Score=32.39 Aligned_cols=92 Identities=23% Similarity=0.294 Sum_probs=49.7
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEE-EEecCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK-VFSKRD 168 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~-v~~~~d 168 (389)
+|.|+|-|.+|..+++.+...+ .. ++++.- +.+...++-+ +|. +. .++.+... -+. +.
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~---~~~~~~~~~~----~g~-~~----------~v~~~~~~~~~~-~~ 245 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDI---NKDKFEKAKQ----LGA-TE----------CINPRDQDKPIV-EV 245 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHHHH----hCC-Ce----------ecccccccchHH-HH
Confidence 7889999999999999888776 54 455431 3344434322 221 10 11111000 000 00
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHH-CCCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMK-GGAK 204 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~-aGaK 204 (389)
..++. ..++|+||||+|.-...+.+-.+++ .|.+
T Consensus 246 l~~~~--~~~~d~vid~~g~~~~~~~~~~~l~~~~G~ 280 (365)
T cd05279 246 LTEMT--DGGVDYAFEVIGSADTLKQALDATRLGGGT 280 (365)
T ss_pred HHHHh--CCCCcEEEECCCCHHHHHHHHHHhccCCCE
Confidence 01111 1379999999986445566667776 6664
No 366
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=41.71 E-value=32 Score=32.81 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=25.8
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+|-|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEe
Confidence 789999 8999999999999886 67777754
No 367
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=41.51 E-value=1.6e+02 Score=28.53 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=24.1
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|.|+|.|.+|..+++.+...+...++++.
T Consensus 169 ~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~ 198 (345)
T cd08286 169 TVAIVGAGPVGLAALLTAQLYSPSKIIMVD 198 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 688999999999999888877645666653
No 368
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.44 E-value=1.5e+02 Score=30.68 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=50.8
Q ss_pred eEEEeccChhHHHHHHHHHcCCC-CcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEec-CC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDD-VDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK-RD 168 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~-~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~-~d 168 (389)
||.|.|.|.+|+..++.|+.+.. .++. +.|....+.... .|.- | ++++.. .+
T Consensus 9 ~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~----------------------~l~~-g--~~~~~g~~~ 62 (438)
T PRK04663 9 NVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQE----------------------QLPE-D--VELHSGGWN 62 (438)
T ss_pred eEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHH----------------------Hhhc-C--CEEEeCCCC
Confidence 79999999999999999987743 5544 556311111000 1110 1 222222 24
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
+++++ +.|+||-+.|.-.+.+......+.|.
T Consensus 63 ~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 63 LEWLL----EADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred hHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 44442 57999999999877776666667776
No 369
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=41.28 E-value=1e+02 Score=29.32 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=24.1
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|.|+| .|.+|+.+++.+...+ ..++++-
T Consensus 165 ~vlI~ga~g~vG~~~~~~a~~~g-~~v~~~~ 194 (332)
T cd08259 165 TVLVTGAGGGVGIHAIQLAKALG-ARVIAVT 194 (332)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-CeEEEEe
Confidence 689999 7999999999998876 6766654
No 370
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=41.19 E-value=34 Score=33.96 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=27.2
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+||-|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN-QTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 5899999 9999999999999986 78888843
No 371
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=40.89 E-value=36 Score=32.18 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=26.2
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+|-|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG-HDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC-CeEEEEeC
Confidence 488999 9999999999999985 78888875
No 372
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=40.53 E-value=2.2e+02 Score=27.54 Aligned_cols=89 Identities=24% Similarity=0.282 Sum_probs=48.6
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|.|-+|+.+++.+...+ + .++++.. +.+... +++ .+|. . . .++.+...+ +..
T Consensus 168 ~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~---s~~~~~-~~~---~~g~-~---------~-vi~~~~~~~-~~~-- 225 (339)
T cd08232 168 RVLVTGAGPIGALVVAAARRAG-AAEIVATDL---ADAPLA-VAR---AMGA-D---------E-TVNLARDPL-AAY-- 225 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC---CHHHHH-HHH---HcCC-C---------E-EEcCCchhh-hhh--
Confidence 6889999999999998888775 5 5555532 223332 222 1221 0 0 111110001 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK 204 (389)
.+ ...++|+|++|+|.....+..-.+++.+.+
T Consensus 226 --~~-~~~~vd~vld~~g~~~~~~~~~~~L~~~G~ 257 (339)
T cd08232 226 --AA-DKGDFDVVFEASGAPAALASALRVVRPGGT 257 (339)
T ss_pred --hc-cCCCccEEEECCCCHHHHHHHHHHHhcCCE
Confidence 00 112689999999864445666678877663
No 373
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.50 E-value=39 Score=33.60 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.8
Q ss_pred eeEEEeccChhHHHHHHHHHcCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
|||+|.|.|.+|..++..+..++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g 23 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRG 23 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 48999999999999999988876
No 374
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=40.30 E-value=33 Score=32.47 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=25.2
Q ss_pred eEEEec-cChhHHHHHHHHHcCC-CCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRD-DVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~-~~~iVaIN 120 (389)
||-|-| +|-||+.+++.|.+++ +.+|++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 578999 9999999999998864 47888775
No 375
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=40.04 E-value=2.4e+02 Score=27.28 Aligned_cols=92 Identities=24% Similarity=0.265 Sum_probs=50.9
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
+|-|+|.|.+|+.+++.+...+ ++++++.. +.+...++-+ +| .. . .++.+...+ . +...
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~---s~~~~~~~~~----~g-~~---------~-v~~~~~~~~-~-~~l~ 220 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARG-ARVIVVDI---DDERLEFARE----LG-AD---------D-TINVGDEDV-A-ARLR 220 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEECC---CHHHHHHHHH----hC-CC---------E-EecCcccCH-H-HHHH
Confidence 6889999999999999888876 77777743 3444443321 22 01 0 111110000 0 0000
Q ss_pred -CCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCE
Q 016451 171 -EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKK 205 (389)
Q Consensus 171 -~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKk 205 (389)
..++ .++|++++|.|.-...+.+..+++.+.+-
T Consensus 221 ~~~~~--~~vd~vld~~g~~~~~~~~~~~l~~~G~~ 254 (337)
T cd08261 221 ELTDG--EGADVVIDATGNPASMEEAVELVAHGGRV 254 (337)
T ss_pred HHhCC--CCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 1122 36899999987533445556677766543
No 376
>PRK08017 oxidoreductase; Provisional
Probab=39.65 E-value=42 Score=30.91 Aligned_cols=30 Identities=27% Similarity=0.133 Sum_probs=25.0
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
-+|-|.| .|.||+.+++.+.+++ .+++++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 3689999 7999999999999876 6777664
No 377
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=39.64 E-value=36 Score=32.15 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=24.5
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
||.|.| .|.||+.+++.|.+++ .+++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeC
Confidence 578999 8999999999999876 6777664
No 378
>PRK07326 short chain dehydrogenase; Provisional
Probab=39.58 E-value=42 Score=30.50 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=25.7
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|-|.| .|.||+.+++.+.+++ .+|+++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g-~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG-YKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC-CEEEEee
Confidence 4789999 9999999999999875 7877775
No 379
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=39.44 E-value=40 Score=34.23 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=25.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|||.|-|..||.+.+++...+ ++++.+.
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG-~~v~~~d 32 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG-YKVIVLD 32 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEe
Confidence 48999999999999999998886 8877764
No 380
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=38.89 E-value=39 Score=35.16 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=25.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCC-cEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~-~iVaINd 121 (389)
.+|+|.|.|.||+.+++.|...+ + +|+.+|.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeC
Confidence 48999999999999999998775 5 5555654
No 381
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=38.86 E-value=1.5e+02 Score=28.80 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=51.6
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
.|.|+|-|.+|..+++.+..++ .+ ++++.. +.+.. .+++ .+|- . ..++.+..... ++.
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~G-~~~v~~~~~---~~~~~-~~~~---~~ga-~----------~v~~~~~~~~~--~~i 229 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRLG-AERIIAMSR---HEDRQ-ALAR---EFGA-T----------DIVAERGEEAV--ARV 229 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEECC---CHHHH-HHHH---HcCC-c----------eEecCCcccHH--HHH
Confidence 6888999999999998888776 65 666643 22222 2221 0221 0 11111110000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
..+. ...++|+++||+|.-...+.+..+++.+..-++++
T Consensus 230 ~~~~-~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 230 RELT-GGVGADAVLECVGTQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred HHhc-CCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEec
Confidence 0111 12368999999986555667777777665333333
No 382
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=38.62 E-value=13 Score=37.83 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.0
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
..||.|.|.|-+|..+++.|...+
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~G 51 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAG 51 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999988664
No 383
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=38.50 E-value=40 Score=35.99 Aligned_cols=38 Identities=29% Similarity=0.457 Sum_probs=29.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCC-CCcEEEEeCCCCCHHHHh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMA 130 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~-~~~iVaINd~~~~~~~la 130 (389)
|||+|.|.|.+|-.+.-.+.+++ .++++++. .+.+.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD---~~~~~v~ 40 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVD---ISVPRID 40 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE---CCHHHHH
Confidence 58999999999998887777764 58888883 3555543
No 384
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=38.32 E-value=1e+02 Score=29.70 Aligned_cols=139 Identities=21% Similarity=0.273 Sum_probs=71.2
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~ 170 (389)
.|.|+|.|.+|+.+++.+...+ +.++++... .+.+...++-+ +|- . .+ +.+.-... +...
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~G-~~v~~~~~~-~~~~~~~~~~~----~g~-~-~~----------~~~~~~~~--~~l~ 226 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQG-ATVVVVGTE-KDEVRLDVAKE----LGA-D-AV----------NGGEEDLA--ELVN 226 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CEEEEECCC-CCHHHHHHHHH----hCC-c-cc----------CCCcCCHH--HHHH
Confidence 5788999999999999988876 777666321 23333333222 221 0 01 00000000 0000
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCCCCCCeEEeecCccCCCCCCCeEecCChhhhhhHHHHHH
Q 016451 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKV 250 (389)
Q Consensus 171 ~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps~D~pt~V~GVN~~~y~~~~~IISnaSCTTncLAPvlkv 250 (389)
.+ ....++|+++||.|.-...+.+..+++.+.+-+.++..... + +...+.+ .+.....|..+-.++...+.-+++.
T Consensus 227 ~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~-~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~~ 302 (306)
T cd08258 227 EI-TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPL-A-ASIDVER-IIQKELSVIGSRSSTPASWETALRL 302 (306)
T ss_pred HH-cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCC-C-cccCHHH-HhhcCcEEEEEecCchHhHHHHHHH
Confidence 00 12236899999997544445566778766644445443311 1 1111111 1122345666666667777777776
Q ss_pred HHh
Q 016451 251 VHE 253 (389)
Q Consensus 251 L~d 253 (389)
+++
T Consensus 303 ~~~ 305 (306)
T cd08258 303 LAS 305 (306)
T ss_pred Hhc
Confidence 654
No 385
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=37.80 E-value=2.2e+02 Score=27.25 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=24.4
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+|.|+| .|.+|..+++.+...+ .+++++-.
T Consensus 143 ~vlI~g~~g~ig~~~~~lak~~G-~~v~~~~~ 173 (327)
T PRK10754 143 QFLFHAAAGGVGLIACQWAKALG-AKLIGTVG 173 (327)
T ss_pred EEEEEeCCcHHHHHHHHHHHHcC-CEEEEEeC
Confidence 788997 9999999998888776 77776643
No 386
>PRK05586 biotin carboxylase; Validated
Probab=37.72 E-value=41 Score=34.95 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=27.9
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|.-||+|.|-|.+|+.+++++.+.+ +++|+|-
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG-~~~v~v~ 32 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMG-IETVAVY 32 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC-CcEEEEc
Confidence 3359999999999999999999886 8888883
No 387
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=37.09 E-value=48 Score=31.86 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=18.3
Q ss_pred EEEecc-ChhHHHHHHHHHcCC
Q 016451 92 VGINGF-GRIGRLVLRVAAFRD 112 (389)
Q Consensus 92 VgINGf-GrIGr~vlR~l~~r~ 112 (389)
|+|.|- |.+|..++..+...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 689998 999999999887765
No 388
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=37.02 E-value=41 Score=36.04 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=29.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMA 130 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~la 130 (389)
.||||+|.|.+|+.+...+...+ ++++..+ .+++.+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG-~~V~l~d---~~~e~l~ 42 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAG-HQVLLYD---IRAEALA 42 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC-CeEEEEe---CCHHHHH
Confidence 37999999999999999988776 8877665 3555554
No 389
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=36.98 E-value=38 Score=35.81 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=24.8
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEE
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaI 119 (389)
|..+|||.|+|-||--+.-+...++ ++++++
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~G-~~ViG~ 38 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASAG-FKVIGV 38 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHcC-CceEeE
Confidence 4479999999999988766665555 888887
No 390
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=36.55 E-value=1.4e+02 Score=30.36 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=53.0
Q ss_pred eEEEec-cChhHHHHHHHHHcCC--CCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEE-EEEec
Q 016451 91 KVGING-FGRIGRLVLRVAAFRD--DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLI-KVFSK 166 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~--~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I-~v~~~ 166 (389)
+|.|+| .|.||...++.+...+ -..++++ + .+.+.+..+.++ +|. ... ..+-....++-+.. .+ .
T Consensus 178 ~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~-~--~~~~r~~~a~~~---~~~-~~~--~~Ga~~~~i~~~~~~~~-~- 246 (410)
T cd08238 178 NTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT-D--VNDERLARAQRL---FPP-EAA--SRGIELLYVNPATIDDL-H- 246 (410)
T ss_pred EEEEEeCCCHHHHHHHHHHHhcccCCceEEEE-c--CCHHHHHHHHHh---ccc-ccc--ccCceEEEECCCccccH-H-
Confidence 789998 8999999988887653 1246555 3 234444333221 010 000 00000011221000 00 0
Q ss_pred CCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEcC
Q 016451 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (389)
Q Consensus 167 ~dp~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISa 210 (389)
+...++ .+..++|+|||++|.-.+.+.+-.+++.+.+.+++..
T Consensus 247 ~~v~~~-t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 247 ATLMEL-TGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred HHHHHH-hCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 000001 1223799999999976666667777775554455533
No 391
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=36.50 E-value=39 Score=35.68 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=26.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
-||-|.|.|-+|+++++.|.+++--.|.-+|-
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR 210 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANR 210 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC
Confidence 47999999999999999999987344555665
No 392
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=36.49 E-value=12 Score=31.03 Aligned_cols=91 Identities=21% Similarity=0.334 Sum_probs=51.2
Q ss_pred hHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCCCCCCCCccCc
Q 016451 100 IGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGV 179 (389)
Q Consensus 100 IGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp~~i~W~~~gv 179 (389)
||...++.+...+ .+|+++-. +.+.+.++-+ +| ....+...+ .. +. +...++- +..++
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~---~~~k~~~~~~----~G-a~~~~~~~~-~~--~~---------~~i~~~~-~~~~~ 59 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDR---SEEKLELAKE----LG-ADHVIDYSD-DD--FV---------EQIRELT-GGRGV 59 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEES---SHHHHHHHHH----TT-ESEEEETTT-SS--HH---------HHHHHHT-TTSSE
T ss_pred hHHHHHHHHHHcC-CEEEEEEC---CHHHHHHHHh----hc-ccccccccc-cc--cc---------ccccccc-ccccc
Confidence 7888888888887 78877753 5555555443 33 110111100 00 00 0011111 12489
Q ss_pred cEEEeccCCCCCHHHHHHHHHCCCCEEEEcCCC
Q 016451 180 DYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (389)
Q Consensus 180 D~VvEsTG~f~t~e~a~~hl~aGaKkVIISaps 212 (389)
|+||||+|.-...+.+-..++.|.+-|++..+.
T Consensus 60 d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 60 DVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp EEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred eEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 999999997666677777777777656665554
No 393
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=36.47 E-value=1.1e+02 Score=30.35 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=18.9
Q ss_pred EEEeccChhHHHHHHHHHcCCC
Q 016451 92 VGINGFGRIGRLVLRVAAFRDD 113 (389)
Q Consensus 92 VgINGfGrIGr~vlR~l~~r~~ 113 (389)
|+|.|.|.||..++-.+..++-
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~ 22 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGL 22 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCC
Confidence 5899999999999988887763
No 394
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=36.40 E-value=10 Score=42.14 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=21.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
.||.|.|.|-+|-.++|.|..-+
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~G 361 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWG 361 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcC
Confidence 67999999999999999998765
No 395
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=36.39 E-value=43 Score=28.61 Aligned_cols=33 Identities=30% Similarity=0.268 Sum_probs=28.6
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|.-||-|.|-|.|+.+++|.+.+.+ ++.|+||.
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~G-i~tv~v~s 33 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELG-IETVAVNS 33 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC-CcceeccC
Confidence 4458999999999999999999997 99999986
No 396
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=36.30 E-value=64 Score=24.97 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=24.0
Q ss_pred eEEEeccChhHHHHHHHHHcCC-CCcEEEEeC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRD-DVDVVAVND 121 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~-~~~iVaINd 121 (389)
||.|.|-|.||-.++..+.+.+ ++.++.-++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 6899999999999999998875 344444444
No 397
>PRK07023 short chain dehydrogenase; Provisional
Probab=36.28 E-value=48 Score=30.49 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=24.6
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEE
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaI 119 (389)
+++-|.| .|.||+.+.+.+.+++ .+++.+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G-~~v~~~ 31 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG-IAVLGV 31 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC-CEEEEE
Confidence 4899999 9999999999998876 676655
No 398
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=36.24 E-value=1.9e+02 Score=28.98 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=27.8
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhh
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMF 133 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLl 133 (389)
+|.|.| .|.||..+++.+...+ ++++++-. +.+...++.
T Consensus 196 ~vlV~ga~g~iG~a~~~lak~~G-~~vv~~~~---s~~~~~~~~ 235 (393)
T cd08246 196 NVLIWGASGGLGSMAIQLARAAG-ANPVAVVS---SEEKAEYCR 235 (393)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC-CeEEEEeC---CHHHHHHHH
Confidence 789999 5999999998888776 77666632 344444443
No 399
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=36.21 E-value=43 Score=35.87 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=29.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhh
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAY 131 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~lay 131 (389)
-||||+|.|.+|+.+.+.+...+ ++|+..+ .+++.+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG-~~V~l~D---~~~e~l~~ 45 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAG-HTVLLYD---ARAGAAAA 45 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEe---CCHHHHHH
Confidence 37999999999999999988776 8877664 25555443
No 400
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=36.17 E-value=2.7e+02 Score=27.02 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=22.9
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaI 119 (389)
+|.|+|.|.+|+.+++.+...+ . .++++
T Consensus 166 ~vlV~g~g~vg~~~~~la~~~G-~~~v~~~ 194 (341)
T cd05281 166 SVLITGCGPIGLMAIAVAKAAG-ASLVIAS 194 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEE
Confidence 6889999999999999888776 6 46666
No 401
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=36.08 E-value=44 Score=32.72 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=24.4
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|||-|-| .|.||+.+++.|.+++.-.++++.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 3799999 999999999999988633344443
No 402
>PLN02858 fructose-bisphosphate aldolase
Probab=36.07 E-value=41 Score=40.60 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=27.2
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|..+||+.|+|.+|..+.+.|...+ ++|.+.|
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G-~~V~v~d 354 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSN-FSVCGYD 354 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCC-CEEEEEe
Confidence 4468999999999999999998876 7877665
No 403
>PLN00198 anthocyanidin reductase; Provisional
Probab=35.76 E-value=46 Score=32.54 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=25.0
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEE
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaI 119 (389)
.+|-|-| .|-||+.+++.|.+++ .+|+++
T Consensus 10 ~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~ 39 (338)
T PLN00198 10 KTACVIGGTGFLASLLIKLLLQKG-YAVNTT 39 (338)
T ss_pred CeEEEECCchHHHHHHHHHHHHCC-CEEEEE
Confidence 5799999 9999999999999886 677655
No 404
>PLN02214 cinnamoyl-CoA reductase
Probab=35.67 E-value=52 Score=32.66 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=25.8
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|-|-| .|.||+.+++.|.+++ .+|+++.
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~ 41 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG-YTVKGTV 41 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe
Confidence 4799999 8999999999999886 6777764
No 405
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=35.52 E-value=51 Score=32.82 Aligned_cols=144 Identities=16% Similarity=0.146 Sum_probs=72.4
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+||+|.|.|.+|..++-.+..++..+++.+ |..-+... ... .|--|.. ..+. .++ .|+.. .|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vvlv-Di~~~l~~-g~a--~d~~~~~-----~~~~-----~~~-~i~~t--~d~ 64 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLL-DVVEGIPQ-GKA--LDMYEAS-----PVGG-----FDT-KVTGT--NNY 64 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEE-eCCCChhH-HHH--Hhhhhhh-----hccC-----CCc-EEEec--CCH
Confidence 489999999999999998888753365544 32222222 111 1221110 0100 111 23321 233
Q ss_pred CCCCCCccCccEEEeccCCCCCH------------HHHHHH---H-HCC--CCEEEEcCCCCCCCeEEeecCccCCCCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTI------------AKASAH---M-KGG--AKKVVISAPSADAPMFVVGVNEKTYKPNM 231 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~------------e~a~~h---l-~aG--aKkVIISaps~D~pt~V~GVN~~~y~~~~ 231 (389)
+++ .++|+||-|.|.-... +..+.. + +.+ ++=+++|+|..=.-.+++-. ..+ +.+
T Consensus 65 ~~~----~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~--sg~-~~~ 137 (305)
T TIGR01763 65 ADT----ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQK--SGF-PKE 137 (305)
T ss_pred HHh----CCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH--HCc-CHH
Confidence 332 3789999999953221 111111 1 222 22234477742111112111 113 235
Q ss_pred CeEecCChhhhhhHHHHHHHHhhcCceE
Q 016451 232 NIVSNASCTTNCLAPLAKVVHEEFGILE 259 (389)
Q Consensus 232 ~IISnaSCTTncLAPvlkvL~d~fGI~~ 259 (389)
+||.- ||.---+.+-+.|.+.||+..
T Consensus 138 rviG~--g~~lds~R~~~~la~~l~v~~ 163 (305)
T TIGR01763 138 RVIGQ--AGVLDSARFRTFIAMELGVSV 163 (305)
T ss_pred HEEEe--ccchHHHHHHHHHHHHhCcCH
Confidence 67654 666666788899999999863
No 406
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=35.49 E-value=51 Score=29.70 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=24.1
Q ss_pred EEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 92 VgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|-|.| +|.||+.+++.|.+++ .+++++..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~ 30 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSR 30 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEES
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Cccccccc
Confidence 56889 9999999999999987 56666655
No 407
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=35.38 E-value=67 Score=34.12 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=31.8
Q ss_pred ccCcccccccCCccccCCCCCcceeEEEeccChhHHHHHHHHHcCCCCcEEEE
Q 016451 67 IQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaI 119 (389)
+||.+...+... ......++..+|.|+|-|..|-.+...|..++ ++++-|
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~dVlIVGaGpaGl~lA~~L~~~G-~~v~vi 52 (547)
T PRK08132 3 YQTPKFPYRPHA--DQDADDPARHPVVVVGAGPVGLALAIDLAQQG-VPVVLL 52 (547)
T ss_pred CcccCccCCCCc--cccCCCCCcCCEEEECCCHHHHHHHHHHHhCC-CcEEEE
Confidence 455555544422 22223346679999999999998887776654 555444
No 408
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=35.32 E-value=1e+02 Score=30.15 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=49.5
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|.|.+|..+.+.+...+ . .++++.. +.+...++-++ |- ...++.+..... +..
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~---~~~~~~~~~~~----g~-----------~~~~~~~~~~~~--~~~ 236 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKALG-PANIIVVDI---DEAKLEAAKAA----GA-----------DVVVNGSDPDAA--KRI 236 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHHHHh----CC-----------cEEecCCCccHH--HHH
Confidence 6899999999999999888776 5 3444422 23333333222 21 011221111100 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
.. -+.. ++|+||||+|.-...+.+..++..+.
T Consensus 237 ~~-~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g 268 (350)
T cd08240 237 IK-AAGG-GVDAVIDFVNNSATASLAFDILAKGG 268 (350)
T ss_pred HH-HhCC-CCcEEEECCCCHHHHHHHHHHhhcCC
Confidence 00 0223 68999999986555666777777665
No 409
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=35.11 E-value=61 Score=29.26 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=25.9
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|-|.| .|.||+.+++.+.+++ .+|+.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG-AKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 5799999 9999999999999886 56666654
No 410
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=35.06 E-value=85 Score=28.78 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=25.5
Q ss_pred eeEEEeccChh-HHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRI-GRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrI-Gr~vlR~l~~r~~~~iVaINd 121 (389)
-||.|.|.|.+ |+.+++.|.+++ ..++.+|.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r 76 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHS 76 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC-CEEEEEEC
Confidence 48999999985 998999998876 56766775
No 411
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=35.00 E-value=46 Score=36.47 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=27.7
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+||-|-| .|-||+.+++.|.++...+|+++..
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 5899999 9999999999999864588888864
No 412
>PLN00203 glutamyl-tRNA reductase
Probab=34.80 E-value=43 Score=36.22 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=26.1
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|+|.|.|.+|+.+++.|..++--+|+.+|-
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR 298 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR 298 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 48999999999999999999876224666764
No 413
>PLN02583 cinnamoyl-CoA reductase
Probab=34.62 E-value=51 Score=31.88 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=25.4
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|-|-| .|.||+.+++.|.+++ .+|+++.
T Consensus 8 ~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~ 37 (297)
T PLN02583 8 SVCVMDASGYVGFWLVKRLLSRG-YTVHAAV 37 (297)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 689999 9999999999999886 7877764
No 414
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=34.39 E-value=1.4e+02 Score=28.73 Aligned_cols=31 Identities=23% Similarity=0.108 Sum_probs=25.6
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCc-EEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVD-VVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~-iVaIN 120 (389)
+..-|.| +|..|+-+++.+.|.+.|. +++|-
T Consensus 19 ~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~ 51 (238)
T KOG4039|consen 19 MSGFVLGATGLCGGGLLKHAQEAPQFSKVYAIL 51 (238)
T ss_pred cceEEEeccccccHHHHHHHHhcccceeEEEEE
Confidence 4678999 9999999999999998765 44554
No 415
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=34.36 E-value=54 Score=30.38 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=24.8
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|+|-|.| .|.||+.+.+.+.+++ .+|+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEE
Confidence 3688999 9999999999999876 6766664
No 416
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.16 E-value=49 Score=34.29 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=23.5
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|||.|.|+|+.|+.++|.|. ++ .+++ +.|
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G-~~V~-~~D 29 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KF-GGVD-IFD 29 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CC-CeEE-EEc
Confidence 47999999999999999999 76 5543 444
No 417
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=34.14 E-value=1.2e+02 Score=30.79 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=38.8
Q ss_pred CccEEEeccCCCCCHHHHHHHHHCCCCEEEEcCC-CCCCCeEEeecCccCCCCCCCeEecCChhh
Q 016451 178 GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP-SADAPMFVVGVNEKTYKPNMNIVSNASCTT 241 (389)
Q Consensus 178 gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIISap-s~D~pt~V~GVN~~~y~~~~~IISnaSCTT 241 (389)
..|++|...-.-...+-.+.|++-|| +|+.+. .+|+-+.|--+|.=.+- .-.+|+.++-.|
T Consensus 230 ~e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~dvd~~vk~~~~V~Ii-~GGlV~~s~~it 291 (351)
T COG5322 230 QEDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPKDVDTSVKNVGGVRII-PGGLVEHSLDIT 291 (351)
T ss_pred ccceEEEEeecCCCceechhhccCCe--EEEcCCcCcccccccccCCCeEEe-cCccccCccccc
Confidence 44666666666666778899999999 999876 45655566555532222 134566555433
No 418
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=33.81 E-value=50 Score=30.73 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=22.8
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+|+|.|||.-|+.....|.+++ ++|+--+.
T Consensus 6 ~IAViGyGsQG~a~AlNLrDSG-~~V~Vglr 35 (165)
T PF07991_consen 6 TIAVIGYGSQGHAHALNLRDSG-VNVIVGLR 35 (165)
T ss_dssp EEEEES-SHHHHHHHHHHHHCC--EEEEEE-
T ss_pred EEEEECCChHHHHHHHHHHhCC-CCEEEEec
Confidence 7999999999999999999886 77654433
No 419
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=33.69 E-value=61 Score=29.17 Aligned_cols=30 Identities=23% Similarity=0.021 Sum_probs=24.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
-||-|.|-|++|...++.|++.+ .+|+-|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 37999999999999999998875 5666664
No 420
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=33.40 E-value=48 Score=31.83 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=25.1
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|-|-| .|.||+.+++.|.+++ .+|+++.
T Consensus 6 ~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 6 VVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred EEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 799999 9999999999999986 6776654
No 421
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.15 E-value=62 Score=29.80 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=25.7
Q ss_pred cceeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 88 m~ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|...|-|.| .|.||+.+++.|.+++ .+++.+.
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g-~~vi~~~ 33 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAG-FDLAIND 33 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 333577889 9999999999999886 6777764
No 422
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=33.04 E-value=2.4e+02 Score=28.37 Aligned_cols=28 Identities=32% Similarity=0.315 Sum_probs=22.6
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEE
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaI 119 (389)
+|.|+| .|.||..+++.+...+ ..++.+
T Consensus 192 ~vlV~Ga~g~vG~~ai~~ak~~G-~~vi~~ 220 (398)
T TIGR01751 192 NVLIWGAAGGLGSYATQLARAGG-GNPVAV 220 (398)
T ss_pred EEEEEcCCcHHHHHHHHHHHHcC-CeEEEE
Confidence 789999 5999999998888776 665555
No 423
>PRK06153 hypothetical protein; Provisional
Probab=32.96 E-value=20 Score=37.53 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=23.4
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEE
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaI 119 (389)
.||+|.|.|=+|-.++..|..-+=-+|+-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LV 206 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLF 206 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEE
Confidence 589999999999999999887652244444
No 424
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=32.83 E-value=66 Score=29.30 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=26.0
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.+|.|-| .|.||+.+++.+.+++ .+|+++..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r 38 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADG-AEVIVVDI 38 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 4789999 9999999999999886 67777643
No 425
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=32.81 E-value=1.6e+02 Score=27.62 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=51.0
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+| .|.+|..+++.+...+ ++++++.. +.+..-++.+ +|- . .+ ++... .+ .+..
T Consensus 145 ~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~~----~g~-~---------~~-~~~~~-~~--~~~i 202 (320)
T cd08243 145 TLLIRGGTSSVGLAALKLAKALG-ATVTATTR---SPERAALLKE----LGA-D---------EV-VIDDG-AI--AEQL 202 (320)
T ss_pred EEEEEcCCChHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHh----cCC-c---------EE-EecCc-cH--HHHH
Confidence 788999 6999999999998886 77777754 3344433322 121 0 11 11000 00 0001
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaK 204 (389)
. .+ ..++|+|++|+|.. ..+.+..++..+.+
T Consensus 203 ~--~~-~~~~d~vl~~~~~~-~~~~~~~~l~~~g~ 233 (320)
T cd08243 203 R--AA-PGGFDKVLELVGTA-TLKDSLRHLRPGGI 233 (320)
T ss_pred H--Hh-CCCceEEEECCChH-HHHHHHHHhccCCE
Confidence 1 12 24799999999963 45566677776653
No 426
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.81 E-value=1.1e+02 Score=31.65 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=24.2
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
||.|.|.|..|+..+|.|..++ .++. +.|
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G-~~V~-~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG-WEVV-VSD 30 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CEEE-EEC
Confidence 7899999999999999999887 5544 445
No 427
>PRK10537 voltage-gated potassium channel; Provisional
Probab=32.47 E-value=67 Score=33.46 Aligned_cols=30 Identities=13% Similarity=-0.007 Sum_probs=25.1
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.|-|.|+|++|+.+++.|.+++ .+++.|-+
T Consensus 242 HvII~G~g~lg~~v~~~L~~~g-~~vvVId~ 271 (393)
T PRK10537 242 HFIICGHSPLAINTYLGLRQRG-QAVTVIVP 271 (393)
T ss_pred eEEEECCChHHHHHHHHHHHCC-CCEEEEEC
Confidence 5889999999999999998775 67777743
No 428
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=32.30 E-value=47 Score=31.14 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=23.8
Q ss_pred EEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 93 GING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 93 gING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
-|-| .|.||+.+++.|.+++ .+|++++.
T Consensus 2 lVtGatG~iG~~l~~~L~~~g-~~V~~~~r 30 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDG-HEVTILTR 30 (292)
T ss_pred EEEcccchhhHHHHHHHHHcC-CEEEEEeC
Confidence 4778 9999999999999876 78888764
No 429
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=32.11 E-value=1.6e+02 Score=28.56 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=51.9
Q ss_pred EEEeccCCCCCHHHHHHHHHCCCCEEEEcCC-CCC----------C-CeEEeecCccCCCCCCCeEecCChhhhhh--HH
Q 016451 181 YVVESSGVFTTIAKASAHMKGGAKKVVISAP-SAD----------A-PMFVVGVNEKTYKPNMNIVSNASCTTNCL--AP 246 (389)
Q Consensus 181 ~VvEsTG~f~t~e~a~~hl~aGaKkVIISap-s~D----------~-pt~V~GVN~~~y~~~~~IISnaSCTTncL--AP 246 (389)
+-+.-.|..++.|.++..++.||.||||... ..+ - --+|.++.... +++...+.....+...+ .-
T Consensus 75 ~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~-~g~~~~v~~~Gw~~~~~~~~~ 153 (243)
T TIGR01919 75 VVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLE-DGEWHTLGNRGWSDGGGDLEV 153 (243)
T ss_pred CCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEec-CCceEEEECCCeecCCCcHHH
Confidence 3456678999999999999999999998322 111 0 12555664321 22123454443333232 22
Q ss_pred HHHHHHhhcCceEEeeeccccc
Q 016451 247 LAKVVHEEFGILEGLMTTVHAT 268 (389)
Q Consensus 247 vlkvL~d~fGI~~g~mTTVHA~ 268 (389)
+++-+ +.+|+.+.++|.|..-
T Consensus 154 ~~~~~-~~~g~~~ii~tdI~~d 174 (243)
T TIGR01919 154 LERLL-DSGGCSRVVVTDSKKD 174 (243)
T ss_pred HHHHH-HhCCCCEEEEEecCCc
Confidence 34444 6789999999988653
No 430
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=32.02 E-value=60 Score=31.82 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=23.9
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEE
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaI 119 (389)
.||-|-| +|-||+.+++.|.+++ .+++.+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~ 31 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVV 31 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEE
Confidence 3899999 9999999999999886 454444
No 431
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=31.83 E-value=3.2e+02 Score=27.36 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=23.6
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaI 119 (389)
+|.|+|.|.+|..+++.+...+ . .++++
T Consensus 206 ~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~ 234 (384)
T cd08265 206 YVVVYGAGPIGLAAIALAKAAG-ASKVIAF 234 (384)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEE
Confidence 6899999999999999998887 5 46665
No 432
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=31.38 E-value=1e+02 Score=29.81 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=51.6
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~d 168 (389)
+|-|+| .|.+|..+++.+...+ . +++++.. +.+...++.+ .+|- + . .++.+...+ . +.
T Consensus 157 ~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~---s~~~~~~~~~---~lGa-~---------~-vi~~~~~~~-~-~~ 216 (345)
T cd08293 157 TMVVSGAAGACGSLAGQIGRLLG-CSRVVGICG---SDEKCQLLKS---ELGF-D---------A-AINYKTDNV-A-ER 216 (345)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcC---CHHHHHHHHH---hcCC-c---------E-EEECCCCCH-H-HH
Confidence 789999 5999999999888776 6 6777643 3333333321 1221 0 0 111100000 0 00
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 169 p~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
..++. ..|+|+||||+|.-. .+.+-.+++.|.+-|.+
T Consensus 217 i~~~~--~~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 217 LRELC--PEGVDVYFDNVGGEI-SDTVISQMNENSHIILC 253 (345)
T ss_pred HHHHC--CCCceEEEECCCcHH-HHHHHHHhccCCEEEEE
Confidence 01111 137999999999743 45566677766643333
No 433
>PRK06924 short chain dehydrogenase; Provisional
Probab=31.04 E-value=69 Score=29.47 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.6
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|-|.| .|.||+.+++.|.+++ .+|+.+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g-~~V~~~~ 32 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKG-THVISIS 32 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcC-CEEEEEe
Confidence 688999 9999999999999886 6776664
No 434
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=31.02 E-value=70 Score=32.25 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred eeEEEecc-ChhHHHHHHHHHcCC
Q 016451 90 TKVGINGF-GRIGRLVLRVAAFRD 112 (389)
Q Consensus 90 ikVgINGf-GrIGr~vlR~l~~r~ 112 (389)
|||+|.|. |.||..++-.|..++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~ 24 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP 24 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 58999997 999999998887765
No 435
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.99 E-value=1.6e+02 Score=29.36 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=19.5
Q ss_pred eeEEEeccCh-hHHHHHHHHHcCC
Q 016451 90 TKVGINGFGR-IGRLVLRVAAFRD 112 (389)
Q Consensus 90 ikVgINGfGr-IGr~vlR~l~~r~ 112 (389)
-+|.|.|.|. +||.+...|.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~g 183 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNAN 183 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCC
Confidence 3799999886 9999999888775
No 436
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=30.99 E-value=67 Score=31.31 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
-+|.|.|.|.+||.++++|...+--+|..+|-
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 37999999999999999999876235555554
No 437
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=30.88 E-value=2.8e+02 Score=26.44 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=51.7
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+| .|.+|+.+++.+...+ .+++++.. +.+...++-+ +|. . .+ ++....... +..
T Consensus 142 ~vlI~ga~g~ig~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~~----~g~-~-~v---------~~~~~~~~~--~~~ 200 (329)
T cd08250 142 TVLVTAAAGGTGQFAVQLAKLAG-CHVIGTCS---SDEKAEFLKS----LGC-D-RP---------INYKTEDLG--EVL 200 (329)
T ss_pred EEEEEeCccHHHHHHHHHHHHcC-CeEEEEeC---cHHHHHHHHH----cCC-c-eE---------EeCCCccHH--HHH
Confidence 689999 8999999988887775 67766643 2333433322 221 0 00 110000000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEEc
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (389)
... .+ .++|+||+|+|. ...+.+..++..+.+-|.++
T Consensus 201 ~~~-~~-~~vd~v~~~~g~-~~~~~~~~~l~~~g~~v~~g 237 (329)
T cd08250 201 KKE-YP-KGVDVVYESVGG-EMFDTCVDNLALKGRLIVIG 237 (329)
T ss_pred HHh-cC-CCCeEEEECCcH-HHHHHHHHHhccCCeEEEEe
Confidence 011 12 379999999996 34455667776666434343
No 438
>PRK12320 hypothetical protein; Provisional
Probab=30.59 E-value=60 Score=36.52 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=26.7
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|||-|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG-HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeC
Confidence 3899999 9999999999999886 68777754
No 439
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=30.32 E-value=72 Score=29.29 Aligned_cols=31 Identities=32% Similarity=0.169 Sum_probs=25.2
Q ss_pred cceeEEEec-cChhHHHHHHHHHcCCCCcEEEE
Q 016451 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 88 m~ikVgING-fGrIGr~vlR~l~~r~~~~iVaI 119 (389)
|+.+|-|.| .|-||+.+++.+.+++ .+++.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g-~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG-WSVGIN 32 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEE
Confidence 555899999 9999999999999886 666543
No 440
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=30.16 E-value=68 Score=31.65 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEE
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVV 117 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iV 117 (389)
|||+|.|.|.+|..+...|.+.+ .+|.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g-~~V~ 27 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK-ISVN 27 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CeEE
Confidence 48999999999999999888765 3443
No 441
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=29.86 E-value=2.1e+02 Score=27.91 Aligned_cols=28 Identities=36% Similarity=0.319 Sum_probs=22.8
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaI 119 (389)
+|.|+|.|-+|..+++.+...+ .. ++++
T Consensus 165 ~vlI~g~g~vG~~a~~lak~~G-~~~v~~~ 193 (343)
T cd05285 165 TVLVFGAGPIGLLTAAVAKAFG-ATKVVVT 193 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEE
Confidence 7889999999999999888776 55 5555
No 442
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=29.86 E-value=64 Score=30.54 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.1
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
||-|.| .|.||+.+++.|.+++ .+++++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEe
Confidence 577999 9999999999998876 6776664
No 443
>PRK08267 short chain dehydrogenase; Provisional
Probab=29.76 E-value=77 Score=29.44 Aligned_cols=29 Identities=28% Similarity=0.205 Sum_probs=24.7
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
++-|.| .|.||+.+.+.+.+++ ..|+.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G-~~V~~~~ 32 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG-WRVGAYD 32 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC-CeEEEEe
Confidence 688999 9999999999999886 6776664
No 444
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=29.68 E-value=94 Score=31.20 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=24.5
Q ss_pred CcceeEEEeccChhHHHHHHHHHcCCCCcEEEE
Q 016451 87 DGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 87 ~m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaI 119 (389)
+..++|.|+|-|..|-.++..|..++ +++.-+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G-~~v~v~ 47 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSG-LRIALI 47 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCC-CEEEEE
Confidence 44578999999999999888887654 554444
No 445
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=29.30 E-value=30 Score=32.27 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.0
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
..||.|.|.|-+|-.+++.|...+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~G 42 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAG 42 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999998765
No 446
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=29.29 E-value=1.2e+02 Score=33.59 Aligned_cols=114 Identities=24% Similarity=0.278 Sum_probs=0.0
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|=|-| .|-||..++|.+++.+==+|+-...- |+-.|.+..+- +++..-..-.-.+-..+|.
T Consensus 252 ~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~----E~~~~~i~~el-------------~~~~~~~~~~~~igdVrD~ 314 (588)
T COG1086 252 TVLVTGGGGSIGSELCRQILKFNPKEIILFSRD----EYKLYLIDMEL-------------REKFPELKLRFYIGDVRDR 314 (588)
T ss_pred EEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCc----hHHHHHHHHHH-------------HhhCCCcceEEEecccccH
Q ss_pred CCCC--CCccCccEEEec------------------cCCCCCHHHHHHHHHCCCCEEEE-cCCCCCCCeEEee
Q 016451 170 AEIP--WGDYGVDYVVES------------------SGVFTTIAKASAHMKGGAKKVVI-SAPSADAPMFVVG 221 (389)
Q Consensus 170 ~~i~--W~~~gvD~VvEs------------------TG~f~t~e~a~~hl~aGaKkVII-Saps~D~pt~V~G 221 (389)
+.+. ..++.+|+|+.+ |..+-+..-+++.++.|+|++|. |.-.+=.|+=|||
T Consensus 315 ~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 315 DRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred HHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhh
No 447
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=29.11 E-value=65 Score=27.60 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=52.0
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhcccc-cccccCceEEEecCCeeE-EC-CEEEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDS-THGVFKGTINVVDDSTLE-IN-GKLIKVFS 165 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyDS-thGkf~~~v~~~~~~~L~-in-Gk~I~v~~ 165 (389)
.||.|.|.|.+|-.+++.|...+ + ++.-+.+-..+++.+.+-+-|.. .-|+.+.+.-. +.|. +| +-.+..+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~---~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAK---ERLQEINPDVEVEAIP 78 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHH---HHHHHHSTTSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHH---HHHHHhcCceeeeeee
Confidence 48999999999999999987765 3 33334333455666655333322 22543322110 0110 11 22233333
Q ss_pred cCCCC-CCCCCc-cCccEEEeccCCCCCHHHHHH
Q 016451 166 KRDPA-EIPWGD-YGVDYVVESSGVFTTIAKASA 197 (389)
Q Consensus 166 ~~dp~-~i~W~~-~gvD~VvEsTG~f~t~e~a~~ 197 (389)
.. .. +..+.. .+.|+||+|++.+..+.....
T Consensus 79 ~~-~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~ 111 (135)
T PF00899_consen 79 EK-IDEENIEELLKDYDIVIDCVDSLAARLLLNE 111 (135)
T ss_dssp SH-CSHHHHHHHHHTSSEEEEESSSHHHHHHHHH
T ss_pred cc-cccccccccccCCCEEEEecCCHHHHHHHHH
Confidence 22 11 000111 278999999998665544443
No 448
>PRK08328 hypothetical protein; Provisional
Probab=29.07 E-value=34 Score=32.63 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.0
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
.-||.|.|.|-+|..++..|...+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~G 50 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAG 50 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999988765
No 449
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=28.80 E-value=1.2e+02 Score=30.09 Aligned_cols=95 Identities=22% Similarity=0.310 Sum_probs=51.5
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|.|.+|..+++.+...+ .. ++++.. +.+....+-+ +|- . . .++.+..... ++.
T Consensus 185 ~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~---~~~~~~~~~~----~g~-~-~---------vv~~~~~~~~--~~l 243 (363)
T cd08279 185 TVAVIGCGGVGLNAIQGARIAG-ASRIIAVDP---VPEKLELARR----FGA-T-H---------TVNASEDDAV--EAV 243 (363)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEEcC---CHHHHHHHHH----hCC-e-E---------EeCCCCccHH--HHH
Confidence 7899999999999999888776 65 666643 2333333211 221 0 0 1111100000 000
Q ss_pred CCCCCC-ccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 170 AEIPWG-DYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 170 ~~i~W~-~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
..|. ..++|++++|+|.-...+.+..+++.+.+-+.+
T Consensus 244 --~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 244 --RDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred --HHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEE
Confidence 0111 236899999998644456666777766643333
No 450
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=28.61 E-value=1e+02 Score=29.49 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=23.2
Q ss_pred EEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 92 VgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|-|.| .|-||+.+++.|.+++ .+++++-|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~ 31 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVD 31 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEec
Confidence 56888 9999999999999886 55566544
No 451
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=28.48 E-value=84 Score=26.94 Aligned_cols=29 Identities=34% Similarity=0.308 Sum_probs=22.9
Q ss_pred EEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 92 VGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 92 VgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
|+|.|.|.||..+.-.|.+.+ .++..+-.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g-~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG-HDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCC-CceEEEEc
Confidence 789999999999998887754 66655644
No 452
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=28.45 E-value=71 Score=33.17 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=27.8
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+-||+|.|-|.++..+++++.+.+ ++++++.
T Consensus 2 ~kkili~g~g~~~~~~~~aa~~lG-~~vv~~~ 32 (449)
T TIGR00514 2 LDKILIANRGEIALRILRACKELG-IKTVAVH 32 (449)
T ss_pred cceEEEeCCCHHHHHHHHHHHHcC-CeEEEEE
Confidence 349999999999999999999986 9999984
No 453
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=28.43 E-value=1.2e+02 Score=29.36 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=25.5
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+|-|-| .|.||+.+++.|.+++ .+|+++.+
T Consensus 7 ~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r 37 (322)
T PLN02986 7 LVCVTGASGYIASWIVKLLLLRG-YTVKATVR 37 (322)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 799999 9999999999999886 67776543
No 454
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.11 E-value=80 Score=28.82 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=24.8
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|-|.| .|.||+.+++.+.+++ .+|+++.
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G-~~V~~~~ 36 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEG-ARVVVTD 36 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 789999 9999999999999886 6766664
No 455
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=28.09 E-value=4.3e+02 Score=24.94 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=24.4
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|.|+| -|.+|..+++.+...+ .+++++.
T Consensus 145 ~vlI~g~~~~~g~~~~~la~~~g-~~v~~~~ 174 (324)
T cd08244 145 VVLVTAAAGGLGSLLVQLAKAAG-ATVVGAA 174 (324)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 689999 8999999999888876 7777664
No 456
>PRK05086 malate dehydrogenase; Provisional
Probab=28.00 E-value=79 Score=31.63 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=43.0
Q ss_pred CccEEEeccCCCCCHH----------------HHHHHHHCCCCEEEE--cCCCCCCCe-EEee-c-CccCCCCCCCeEec
Q 016451 178 GVDYVVESSGVFTTIA----------------KASAHMKGGAKKVVI--SAPSADAPM-FVVG-V-NEKTYKPNMNIVSN 236 (389)
Q Consensus 178 gvD~VvEsTG~f~t~e----------------~a~~hl~aGaKkVII--Saps~D~pt-~V~G-V-N~~~y~~~~~IISn 236 (389)
++|+||-|.|.-.... -.+.-.+.+-+++|| |+|. |+-+ ++.. + +...+ +.+++|.-
T Consensus 69 ~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~-D~~t~~~~~~~~~~sg~-p~~rvig~ 146 (312)
T PRK05086 69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV-NTTVAIAAEVLKKAGVY-DKNKLFGV 146 (312)
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch-HHHHHHHHHHHHHhcCC-CHHHEEee
Confidence 7999999999854421 111222345555544 6664 2211 1110 0 22223 34678877
Q ss_pred CChhhhhhHHHHHHHHhhcCceE
Q 016451 237 ASCTTNCLAPLAKVVHEEFGILE 259 (389)
Q Consensus 237 aSCTTncLAPvlkvL~d~fGI~~ 259 (389)
|+ ---+.+-..|.+.+|+..
T Consensus 147 --~~-Lds~R~~~~ia~~l~~~~ 166 (312)
T PRK05086 147 --TT-LDVIRSETFVAELKGKQP 166 (312)
T ss_pred --ec-HHHHHHHHHHHHHhCCCh
Confidence 53 444678888999999874
No 457
>PRK15076 alpha-galactosidase; Provisional
Probab=27.89 E-value=68 Score=33.75 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=11.6
Q ss_pred eeEEEeccChhHH
Q 016451 90 TKVGINGFGRIGR 102 (389)
Q Consensus 90 ikVgINGfGrIGr 102 (389)
+||+|.|-|.+|-
T Consensus 2 ~KIaIIGaGsvg~ 14 (431)
T PRK15076 2 PKITFIGAGSTVF 14 (431)
T ss_pred cEEEEECCCHHHh
Confidence 6999999999983
No 458
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=27.84 E-value=67 Score=35.05 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=27.4
Q ss_pred eeEEEec-cChhHHHHHHHHHcCC-CCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~-~~~iVaINd 121 (389)
+||-|-| +|.||+.+++.|.+++ +.+|+++..
T Consensus 7 ~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 7 KNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 4899999 9999999999999873 578888853
No 459
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=27.80 E-value=75 Score=31.18 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=25.7
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+|-|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG-YEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC-CEEEEEec
Confidence 678899 9999999999999886 68887743
No 460
>PRK12827 short chain dehydrogenase; Provisional
Probab=27.60 E-value=88 Score=28.41 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=25.4
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+++-|.| .|-||+.+++.|.+++ .+++.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 5799999 9999999999999886 6776654
No 461
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=27.57 E-value=4e+02 Score=24.97 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=23.1
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaI 119 (389)
||.|+|-|.+|..-++.|++.+ -.|+.|
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~g-a~VtVv 38 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAG-AQLRVI 38 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCC-CEEEEE
Confidence 7999999999999999999876 444444
No 462
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=27.13 E-value=2.3e+02 Score=26.24 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=24.6
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+|.|+| .|.+|+.+.+.+...+ +.++++..
T Consensus 139 ~vlI~g~~g~~g~~~~~~a~~~g-~~v~~~~~ 169 (320)
T cd05286 139 TVLVHAAAGGVGLLLTQWAKALG-ATVIGTVS 169 (320)
T ss_pred EEEEEcCCchHHHHHHHHHHHcC-CEEEEEcC
Confidence 689999 8999999999888776 77777643
No 463
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=26.84 E-value=77 Score=31.80 Aligned_cols=129 Identities=17% Similarity=0.201 Sum_probs=67.2
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhccccccccc-CceE-EEecCCeeEE----CCEEE-E
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVF-KGTI-NVVDDSTLEI----NGKLI-K 162 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf-~~~v-~~~~~~~L~i----nGk~I-~ 162 (389)
+|||.+|+|..|..+.+-|..++ +++..-|- +++--+-+++ .+|-- ..+. +.-.+-.++| |+..+ .
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r---~~~ka~~~~~---~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~ 73 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNR---TPEKAAELLA---AAGATVAASPAEAAAEADVVITMLPDDAAVRA 73 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-CEEEEEeC---ChhhhhHHHH---HcCCcccCCHHHHHHhCCEEEEecCCHHHHHH
Confidence 48999999999999999999987 88777764 3333122221 12211 0000 0000001111 11100 0
Q ss_pred EEecCCCCCCCCCccCccEEEeccCCC--CCHHHHHHHHHCCCCEEEEcCC-C-------CCCCeEEeecCccCCCC
Q 016451 163 VFSKRDPAEIPWGDYGVDYVVESSGVF--TTIAKASAHMKGGAKKVVISAP-S-------ADAPMFVVGVNEKTYKP 229 (389)
Q Consensus 163 v~~~~dp~~i~W~~~gvD~VvEsTG~f--~t~e~a~~hl~aGaKkVIISap-s-------~D~pt~V~GVN~~~y~~ 229 (389)
|.. .+-.-+.+-. .-.++|||+-.- .+++.++.+.+.|. -.+.+| | +...+|+.|--.+.|+.
T Consensus 74 V~~-g~~g~~~~~~-~G~i~IDmSTisp~~a~~~a~~~~~~G~--~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r 146 (286)
T COG2084 74 VLF-GENGLLEGLK-PGAIVIDMSTISPETARELAAALAAKGL--EFLDAPVSGGVPGAAAGTLTIMVGGDAEAFER 146 (286)
T ss_pred HHh-CccchhhcCC-CCCEEEECCCCCHHHHHHHHHHHHhcCC--cEEecCccCCchhhhhCceEEEeCCCHHHHHH
Confidence 000 0000111111 125888887543 33455566666787 467888 2 13778999988887764
No 464
>PRK05884 short chain dehydrogenase; Provisional
Probab=26.79 E-value=86 Score=28.91 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=24.1
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|+-|-| .|.||+.+++.+.+++ .+|+.+.
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g-~~v~~~~ 31 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDG-HKVTLVG 31 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 788999 8999999999998876 5766653
No 465
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.49 E-value=67 Score=34.17 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=24.0
Q ss_pred CcceeEEEeccChhHHHHHHHHHcCCCCcEE
Q 016451 87 DGNTKVGINGFGRIGRLVLRVAAFRDDVDVV 117 (389)
Q Consensus 87 ~m~ikVgINGfGrIGr~vlR~l~~r~~~~iV 117 (389)
.|+.+|+|+|.|..|-..+|.|.+.+ ++++
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g-~~v~ 33 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREG-HEVV 33 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCC-CCce
Confidence 45679999999999999999998763 4433
No 466
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=26.26 E-value=79 Score=31.65 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=25.5
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
||+|.|-|..|+.+++++.+.+ ++++++.
T Consensus 1 kililG~g~~~~~l~~aa~~~G-~~v~~~d 29 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLG-VEVIAVD 29 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CEEEEEe
Confidence 7999999999999999998886 8877774
No 467
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=25.96 E-value=57 Score=28.79 Aligned_cols=32 Identities=31% Similarity=0.749 Sum_probs=25.4
Q ss_pred CeeEECCEEEEEEecCCCC---CCCCCccCccEEEec
Q 016451 152 STLEINGKLIKVFSKRDPA---EIPWGDYGVDYVVES 185 (389)
Q Consensus 152 ~~L~inGk~I~v~~~~dp~---~i~W~~~gvD~VvEs 185 (389)
+++-++++..+.+.+++++ +|||. .+|+|.=+
T Consensus 25 GkimiGDkaFEFyn~~n~~dyIQIPW~--eI~~V~a~ 59 (118)
T PF06115_consen 25 GKIMIGDKAFEFYNDRNVEDYIQIPWE--EIDYVIAS 59 (118)
T ss_pred CeEEEcccceEeecCCChhhcEEeChh--heeEEEEE
Confidence 4788888999999988886 58998 78877543
No 468
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.81 E-value=98 Score=28.08 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=24.6
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEE
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaI 119 (389)
.++-|.| .|.||+.+++.+.+++ .+++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG-AKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 4789999 9999999999998875 777666
No 469
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=25.70 E-value=84 Score=31.38 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=25.2
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|||.|-|..|+.+.+++.+.+ ++++++.
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG-~~v~~~d 29 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLG-IKVHVLD 29 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CEEEEEC
Confidence 4899999999999999998886 8877774
No 470
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=25.65 E-value=4e+02 Score=25.87 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=23.0
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaI 119 (389)
+|.|+|-|.+|..+++.+...+ .+ ++++
T Consensus 164 ~vlI~~~g~vg~~a~~la~~~G-~~~v~~~ 192 (340)
T TIGR00692 164 SVLVTGAGPIGLMAIAVAKASG-AYPVIVS 192 (340)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEE
Confidence 6788899999999999888776 65 6666
No 471
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=25.65 E-value=5.4e+02 Score=24.88 Aligned_cols=91 Identities=26% Similarity=0.264 Sum_probs=48.4
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+|-|.+|..+++.+...+ . .++++ + ...+...++-+ .|- ...++.+.-.+. +..
T Consensus 166 ~vlV~~~g~vg~~~~~la~~~G-~~~v~~~-~--~~~~~~~~~~~----lg~-----------~~~~~~~~~~~~--~~~ 224 (341)
T PRK05396 166 DVLITGAGPIGIMAAAVAKHVG-ARHVVIT-D--VNEYRLELARK----MGA-----------TRAVNVAKEDLR--DVM 224 (341)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CCEEEEE-c--CCHHHHHHHHH----hCC-----------cEEecCccccHH--HHH
Confidence 7889999999999988887765 5 46666 3 13333322211 111 011111100000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHCCC
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGa 203 (389)
.++.. ..++|+||||.|.-...+.+..+++.+.
T Consensus 225 ~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G 257 (341)
T PRK05396 225 AELGM-TEGFDVGLEMSGAPSAFRQMLDNMNHGG 257 (341)
T ss_pred HHhcC-CCCCCEEEECCCCHHHHHHHHHHHhcCC
Confidence 11111 2379999999986545555666776665
No 472
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=25.51 E-value=3.2e+02 Score=27.31 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=23.5
Q ss_pred eEEEeccChhHHHHHHHHHcCCCC-cEEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~-~iVaI 119 (389)
+|.|.|-|.||..+++.+...+ . .++++
T Consensus 193 ~VlV~G~g~vG~~~~~~a~~~G-~~~Vi~~ 221 (373)
T cd08299 193 TCAVFGLGGVGLSAIMGCKAAG-ASRIIAV 221 (373)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 6889999999999999888876 6 56666
No 473
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=25.50 E-value=1.4e+02 Score=28.45 Aligned_cols=38 Identities=11% Similarity=0.160 Sum_probs=27.4
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhh
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layL 132 (389)
+|.|+| -|.+|+.+++.+...+ ..++.+-. +.+...++
T Consensus 143 ~vlI~ga~g~~g~~~~~~a~~~g-~~v~~~~~---~~~~~~~~ 181 (334)
T PTZ00354 143 SVLIHAGASGVGTAAAQLAEKYG-AATIITTS---SEEKVDFC 181 (334)
T ss_pred EEEEEcCCchHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHH
Confidence 699999 8999999999998876 66544432 34555444
No 474
>PRK07577 short chain dehydrogenase; Provisional
Probab=25.34 E-value=97 Score=28.07 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=24.6
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+|-|.| .|.||+.+++.+.+++ .+++.+.
T Consensus 5 ~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~ 34 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLG-HQVIGIA 34 (234)
T ss_pred EEEEECCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 688999 9999999999999886 6776664
No 475
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=25.27 E-value=90 Score=32.89 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=27.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
-||-|.|-|.|+..++|++.+.+ +++|+|..
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~G-i~~v~v~~ 33 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMG-IRSVAIYS 33 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC
Confidence 48999999999999999999986 88888854
No 476
>PLN02650 dihydroflavonol-4-reductase
Probab=25.19 E-value=84 Score=30.93 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=24.5
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEE
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaI 119 (389)
+|-|-| .|.||+.+++.|.+++ .+|+++
T Consensus 7 ~iLVTGatGfIGs~l~~~L~~~G-~~V~~~ 35 (351)
T PLN02650 7 TVCVTGASGFIGSWLVMRLLERG-YTVRAT 35 (351)
T ss_pred EEEEeCCcHHHHHHHHHHHHHCC-CEEEEE
Confidence 799999 9999999999999886 677665
No 477
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=25.08 E-value=52 Score=30.68 Aligned_cols=26 Identities=8% Similarity=0.281 Sum_probs=22.1
Q ss_pred ceeEEEeccChhHHHHHHHHHcCCCCc
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRDDVD 115 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~~~~ 115 (389)
..||.|.|.|-+|-.+++.|...+ +.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~G-Vg 46 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSG-IG 46 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcC-CC
Confidence 358999999999999999998765 44
No 478
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=25.00 E-value=3.7e+02 Score=25.93 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=25.3
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
-+|.|+| .|.+|..+++.+...+ ++++++.+
T Consensus 164 ~~vlI~g~~g~ig~~~~~~a~~~G-~~v~~~~~ 195 (350)
T cd08248 164 KRVLILGGSGGVGTFAIQLLKAWG-AHVTTTCS 195 (350)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CeEEEEeC
Confidence 3789999 7999999999888776 67777654
No 479
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=24.80 E-value=4e+02 Score=25.99 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=22.4
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCc-EEEEe
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVN 120 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~-iVaIN 120 (389)
+|.|.|.|.+|..+++.+...+ .. ++++.
T Consensus 177 ~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~ 206 (350)
T cd08256 177 VVVLAGAGPLGLGMIGAARLKN-PKKLIVLD 206 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEc
Confidence 5788889999999999888876 44 44443
No 480
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.76 E-value=1.2e+02 Score=27.41 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=23.3
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEE
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVA 118 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVa 118 (389)
.+|-|.| .|-||+.+++.+.+++ .+++.
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g-~~v~~ 35 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAG-ADVVV 35 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CeEEE
Confidence 4799999 9999999999999886 45444
No 481
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=24.69 E-value=3.3e+02 Score=26.22 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=22.7
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEE
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaI 119 (389)
+|.|.|.|.+|..+++.+...+.-.++++
T Consensus 170 ~VlI~g~g~vg~~~iqlak~~g~~~v~~~ 198 (347)
T cd05278 170 TVAVIGAGPVGLCAVAGARLLGAARIIAV 198 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 68888999999999998887762256666
No 482
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=24.69 E-value=4.3e+02 Score=25.70 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=53.3
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeCCCCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEEEecCCC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd~~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v~~~~dp 169 (389)
+|.|+| .|.+|..+++.+...+ +.++++..+ +...++-+ +|- ...+.. ... .. . +..
T Consensus 157 ~vlI~ga~g~vg~~~~~~a~~~G-~~v~~~~~~----~~~~~~~~----~g~-~~v~~~--------~~~--~~-~-~~l 214 (339)
T cd08249 157 PVLIWGGSSSVGTLAIQLAKLAG-YKVITTASP----KNFDLVKS----LGA-DAVFDY--------HDP--DV-V-EDI 214 (339)
T ss_pred EEEEEcChhHHHHHHHHHHHHcC-CeEEEEECc----ccHHHHHh----cCC-CEEEEC--------CCc--hH-H-HHH
Confidence 689999 6999999999998876 677766432 23323311 231 111111 000 00 0 001
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHC--CCCEEEEc
Q 016451 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKG--GAKKVVIS 209 (389)
Q Consensus 170 ~~i~W~~~gvD~VvEsTG~f~t~e~a~~hl~a--GaKkVIIS 209 (389)
.++. ..++|+|||++|.-.....+..+++. |.+-|.+.
T Consensus 215 ~~~~--~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g 254 (339)
T cd08249 215 RAAT--GGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLL 254 (339)
T ss_pred HHhc--CCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEec
Confidence 1111 23689999999964456667778877 66444443
No 483
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=24.62 E-value=97 Score=30.85 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=26.3
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|||.+.|.+.++..+++.|.++ ++++++|=
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~-~~~i~~Vv 30 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES-GHEVVAVV 30 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCcEEEEE
Confidence 5899999999999999999987 48888774
No 484
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.60 E-value=78 Score=31.84 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.9
Q ss_pred eeEEEeccChhHHHHHHHHHcCC
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
+||+|.|.|.+|..+...|.+.+
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC
Confidence 68999999999999999888775
No 485
>PRK14851 hypothetical protein; Provisional
Probab=24.38 E-value=23 Score=39.56 Aligned_cols=98 Identities=20% Similarity=0.181 Sum_probs=48.1
Q ss_pred eeEEEeccChhHHHHHHHHHcCCCCc-EEEEeCCCCCHHHHhhhhcc-cccccccCceEEEecCCeeEEC-CEEEEEEec
Q 016451 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKY-DSTHGVFKGTINVVDDSTLEIN-GKLIKVFSK 166 (389)
Q Consensus 90 ikVgINGfGrIGr~vlR~l~~r~~~~-iVaINd~~~~~~~layLlky-DSthGkf~~~v~~~~~~~L~in-Gk~I~v~~~ 166 (389)
-||+|.|.|-+|-.++..|...+ +. |.-|..-.+++..+-..+-| .+.-|+.+-++-.+ .-..+| +-+|..+.+
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~G-VG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~--~l~~inP~~~I~~~~~ 120 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTG-IGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKE--QALSINPFLEITPFPA 120 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhC-CCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHH--HHHHhCCCCeEEEEec
Confidence 58999999999999999887654 21 11121101222223222212 23335544332110 011233 224445443
Q ss_pred C-CCCCCCCCccCccEEEeccCCCC
Q 016451 167 R-DPAEIPWGDYGVDYVVESSGVFT 190 (389)
Q Consensus 167 ~-dp~~i~W~~~gvD~VvEsTG~f~ 190 (389)
. ++++++---.++|+||||+..|.
T Consensus 121 ~i~~~n~~~~l~~~DvVid~~D~~~ 145 (679)
T PRK14851 121 GINADNMDAFLDGVDVVLDGLDFFQ 145 (679)
T ss_pred CCChHHHHHHHhCCCEEEECCCCCc
Confidence 2 22332211137999999998764
No 486
>PTZ00325 malate dehydrogenase; Provisional
Probab=24.37 E-value=1.1e+02 Score=31.08 Aligned_cols=141 Identities=21% Similarity=0.150 Sum_probs=73.1
Q ss_pred CcceeEEEecc-ChhHHHHHHHHHcCCCC-cEEEEeCC-CCCHHHHhhhhcccccccccCceEEEecCCeeEECCEEEEE
Q 016451 87 DGNTKVGINGF-GRIGRLVLRVAAFRDDV-DVVAVNDP-FIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKV 163 (389)
Q Consensus 87 ~m~ikVgINGf-GrIGr~vlR~l~~r~~~-~iVaINd~-~~~~~~layLlkyDSthGkf~~~v~~~~~~~L~inGk~I~v 163 (389)
.|. ||+|.|. |+||..+...+..++.. +|+-+ |. ....+-| |--|+.. ...+
T Consensus 7 ~~~-KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~-Di~~~~g~a~------Dl~~~~~-----------------~~~v 61 (321)
T PTZ00325 7 KMF-KVAVLGAAGGIGQPLSLLLKQNPHVSELSLY-DIVGAPGVAA------DLSHIDT-----------------PAKV 61 (321)
T ss_pred CCC-EEEEECCCCHHHHHHHHHHhcCCCCCEEEEE-ecCCCccccc------chhhcCc-----------------CceE
Confidence 454 9999997 99999999888765422 33333 21 0111100 1111100 0112
Q ss_pred EecCCCCC--CCCCccCccEEEeccCCCCCH-----H-----------HHHHHHHCCCCEEEE--cCCCCCCCeEEee--
Q 016451 164 FSKRDPAE--IPWGDYGVDYVVESSGVFTTI-----A-----------KASAHMKGGAKKVVI--SAPSADAPMFVVG-- 221 (389)
Q Consensus 164 ~~~~dp~~--i~W~~~gvD~VvEsTG~f~t~-----e-----------~a~~hl~aGaKkVII--Saps~D~pt~V~G-- 221 (389)
....++.+ -.. .|.|+||-+.|.-... + -.++-.+.|.+++|+ |+|- |.-+.+..
T Consensus 62 ~~~td~~~~~~~l--~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv-dv~~~~~~~~ 138 (321)
T PTZ00325 62 TGYADGELWEKAL--RGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV-NSTVPIAAET 138 (321)
T ss_pred EEecCCCchHHHh--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH-HHHHHHHHhh
Confidence 11122221 011 3899999999985441 1 112233468888766 5553 22111110
Q ss_pred -cCccCCCCCCCeEecCChhhhhhHHHHHHHHhhcCceE
Q 016451 222 -VNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILE 259 (389)
Q Consensus 222 -VN~~~y~~~~~IISnaSCTTncLAPvlkvL~d~fGI~~ 259 (389)
-....+. ..+++... +-=-+.+-..|.+++|+.-
T Consensus 139 ~~~~sg~p-~~~viG~g---~LDs~R~r~~la~~l~v~~ 173 (321)
T PTZ00325 139 LKKAGVYD-PRKLFGVT---TLDVVRARKFVAEALGMNP 173 (321)
T ss_pred hhhccCCC-hhheeech---hHHHHHHHHHHHHHhCcCh
Confidence 0111222 35788773 3666889999999999873
No 487
>PRK07578 short chain dehydrogenase; Provisional
Probab=24.26 E-value=1.7e+02 Score=26.09 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=22.9
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
++-|-| .|.||+.+.+.+.++ .+|+.+.
T Consensus 2 ~vlItGas~giG~~la~~l~~~--~~vi~~~ 30 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR--HEVITAG 30 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc--CcEEEEe
Confidence 688999 899999999999876 5666654
No 488
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=24.23 E-value=1.1e+02 Score=27.02 Aligned_cols=30 Identities=33% Similarity=0.395 Sum_probs=25.2
Q ss_pred eEEEeccChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgINGfGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
++.|.|.|.-|+.+++.|.++ .+++++.=|
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid 30 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLD 30 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEc
Confidence 478999999999999998765 488888765
No 489
>PRK08177 short chain dehydrogenase; Provisional
Probab=23.95 E-value=1.1e+02 Score=27.80 Aligned_cols=30 Identities=20% Similarity=0.036 Sum_probs=24.7
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
+|-|-| .|.||+.+++.+.+++ ..|+++..
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r 33 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERG-WQVTATVR 33 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCC-CEEEEEeC
Confidence 578999 9999999999999876 67766643
No 490
>PRK07074 short chain dehydrogenase; Provisional
Probab=23.95 E-value=1.1e+02 Score=28.28 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=24.1
Q ss_pred eEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 91 kVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
++-|.| .|.||+.+.+.|.+++ .+|+.+.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g-~~v~~~~ 33 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAG-DRVLALD 33 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCC-CEEEEEe
Confidence 688889 8999999999998876 6766664
No 491
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=23.89 E-value=95 Score=32.56 Aligned_cols=105 Identities=21% Similarity=0.284 Sum_probs=59.9
Q ss_pred Eec-cChhHHHHHHHHHcC-CCCcEEEEeCCCCCHHHHhhhhc-ccccccccCceEEEecCC---eeE--ECCEEEEEEe
Q 016451 94 ING-FGRIGRLVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDS---TLE--INGKLIKVFS 165 (389)
Q Consensus 94 ING-fGrIGr~vlR~l~~r-~~~~iVaINd~~~~~~~layLlk-yDSthGkf~~~v~~~~~~---~L~--inGk~I~v~~ 165 (389)
|.| +|-||++.++.+... ++|+|+++.- ..+.+.+..+.+ |.. .-+-+.++. .+. ..+..++++.
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa-~~n~~~L~~q~~~f~p------~~v~i~~~~~~~~l~~~l~~~~~~v~~ 73 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTA-NYNIELLEQQIKRFQP------RIVSVADKELADTLRTRLSANTSKITY 73 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEEC-CCCHHHHHHHHHHhCC------CEEEEcCHHHHHHHHHhccCCCcEEEE
Confidence 568 999999999998865 4699999965 346666655443 211 112221110 010 1222234433
Q ss_pred cCC-CCC-CCCCccCccEEEeccCCCCCHHHHHHHHHCCCCEEEE
Q 016451 166 KRD-PAE-IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (389)
Q Consensus 166 ~~d-p~~-i~W~~~gvD~VvEsTG~f~t~e~a~~hl~aGaKkVII 208 (389)
..+ ..+ ..+ ..+|+|+-+.-.+...+-.-..+++| |++-+
T Consensus 74 G~~~l~~l~~~--~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaL 115 (383)
T PRK12464 74 GTDGLIAVATH--PGSDLVLSSVVGAAGLLPTIEALKAK-KDIAL 115 (383)
T ss_pred CHHHHHHHHcC--CCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEE
Confidence 221 111 111 26899999887777777666778888 55555
No 492
>PRK07411 hypothetical protein; Validated
Probab=23.88 E-value=29 Score=35.85 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=20.8
Q ss_pred ceeEEEeccChhHHHHHHHHHcCC
Q 016451 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (389)
Q Consensus 89 ~ikVgINGfGrIGr~vlR~l~~r~ 112 (389)
..||.|.|.|-+|-.++..|...+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~G 61 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAG 61 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999887654
No 493
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=23.86 E-value=1.1e+02 Score=27.72 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=25.2
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEeC
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaINd 121 (389)
.++.|.| .|.||+.+.+.+..++ .+++.++.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R 60 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGR 60 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcC
Confidence 4799999 7999999999998776 57666653
No 494
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=23.78 E-value=93 Score=30.91 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=26.2
Q ss_pred cceeEEEeccChhHHH-HHHHHH----cCCCCcEEEEeC-CCCCHHHHh
Q 016451 88 GNTKVGINGFGRIGRL-VLRVAA----FRDDVDVVAVND-PFIDAKYMA 130 (389)
Q Consensus 88 m~ikVgINGfGrIGr~-vlR~l~----~r~~~~iVaINd-~~~~~~~la 130 (389)
|.+||||.-.|.||-. +++.++ +|+++++..+.. +-++++.+.
T Consensus 1 mvvKiGiiKlGNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~ 49 (277)
T PRK00994 1 MVVKIGIIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVE 49 (277)
T ss_pred CeEEEEEEEecccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHH
Confidence 6789999999999984 344443 355666554432 123444443
No 495
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.77 E-value=96 Score=29.66 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=26.4
Q ss_pred cEEEeccCCCCCHHHHHHHHHCCCCEEEEcCC
Q 016451 180 DYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (389)
Q Consensus 180 D~VvEsTG~f~t~e~a~~hl~aGaKkVIISap 211 (389)
++-+...|...+.+.++..++.||.+|+|...
T Consensus 74 ~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 74 FIPLTVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 44567789999999999999999999988543
No 496
>PRK07024 short chain dehydrogenase; Provisional
Probab=23.22 E-value=1.2e+02 Score=28.19 Aligned_cols=31 Identities=29% Similarity=0.220 Sum_probs=24.8
Q ss_pred ceeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 89 ~ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
+.+|-|-| .|-||+.+.+.|.+++ ..|+.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G-~~v~~~~ 33 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG-ATLGLVA 33 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 34788888 9999999999998876 5666554
No 497
>PRK05993 short chain dehydrogenase; Provisional
Probab=23.21 E-value=1.1e+02 Score=28.93 Aligned_cols=30 Identities=23% Similarity=0.188 Sum_probs=25.0
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
.+|-|.| .|.||+.+++.+.+++ .+|+++.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G-~~Vi~~~ 35 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDG-WRVFATC 35 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 3688999 8999999999998876 6777664
No 498
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=23.19 E-value=1.1e+02 Score=28.23 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=25.2
Q ss_pred eeEEEec-cChhHHHHHHHHHcCCCCcEEEEe
Q 016451 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 90 ikVgING-fGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
-+|-|-| .|.||+.+++.+.+++ .+|+.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G-~~V~~~~ 41 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAG-AEVILNG 41 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcC-CEEEEEe
Confidence 3788999 9999999999999886 6776654
No 499
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=23.09 E-value=1.1e+02 Score=31.59 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=28.0
Q ss_pred cceeEEEeccChhHHHHHHHHHcCCCCcEEEEe
Q 016451 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (389)
Q Consensus 88 m~ikVgINGfGrIGr~vlR~l~~r~~~~iVaIN 120 (389)
|..||.|.|-|.+|+.+++++.+.+ +.++++.
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG-~~~v~~~ 32 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLG-IRTVAIY 32 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC-CeEEEEe
Confidence 4569999999999999999999887 8888774
No 500
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=23.08 E-value=1.2e+02 Score=30.52 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.4
Q ss_pred eEEEecc-ChhHHHHHHHHHcCC
Q 016451 91 KVGINGF-GRIGRLVLRVAAFRD 112 (389)
Q Consensus 91 kVgINGf-GrIGr~vlR~l~~r~ 112 (389)
||+|.|. |.||..++-.|..++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~ 23 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQP 23 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCC
Confidence 7999997 999999988887765
Done!