RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016451
(389 letters)
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 597 bits (1541), Expect = 0.0
Identities = 189/329 (57%), Positives = 235/329 (71%), Gaps = 37/329 (11%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
+V INGFGRIGRLV+R+A R +V+VVA+NDPFI Y AYMFKYDSTHG + G ++ D
Sbjct: 3 RVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSH-D 61
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
D + ++GK I + +RDPA +PWG VD ++S+GVF + A H+ GAKKVVI+A
Sbjct: 62 DKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITA 121
Query: 211 PSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTA 270
PS+ APMFV+GVNE+ Y ++ IVSNASCTTNCLAPLAKV+++ FGI EGLMTTVH+ TA
Sbjct: 122 PSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSLTA 181
Query: 271 TQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK---------------------------- 302
TQKTVDGPS KDWRGGR AS NIIPSSTGAAK
Sbjct: 182 TQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVV 241
Query: 303 --------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGL 354
+Y+++K +K A+EG LKG+LGYT++ VVS+DF+GDS SSIFDA AGI L
Sbjct: 242 DLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQL 301
Query: 355 SASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
S F+KLVSWYDNE+GYS RV+DL+EH+A
Sbjct: 302 SPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 596 bits (1538), Expect = 0.0
Identities = 212/333 (63%), Positives = 245/333 (73%), Gaps = 37/333 (11%)
Query: 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGT-I 146
G K+GINGFGRIGRLV RVA +DV++VAVNDPFI YM YMFKYD+ HG +K + I
Sbjct: 2 GKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDI 61
Query: 147 NVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKV 206
+ D TL + K + VF R+P EIPW + G +YVVES+GVFT KA+AH+KGGAKKV
Sbjct: 62 KIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKV 121
Query: 207 VISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVH 266
VISAPS DAPMFV GVNE Y +++IVSNASCTTNCLAPLAKV+H+ FGI+EGLMTTVH
Sbjct: 122 VISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVH 181
Query: 267 ATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK------------------------ 302
A TATQKTVDGPS KDWRGGR AS NIIPSSTGAAK
Sbjct: 182 AITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVD 241
Query: 303 ------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKA 350
ASY+ +K+AIK ASEG LKGI+GY +ED+VS DFVGDSRSSIFDAKA
Sbjct: 242 VSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKA 301
Query: 351 GIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
GI L+ +F+KLV+WYDNEWGYSNRV+DLI HMA
Sbjct: 302 GIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 594 bits (1533), Expect = 0.0
Identities = 192/336 (57%), Positives = 233/336 (69%), Gaps = 39/336 (11%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
VGINGFGRIGRLVLR A V VVAVNDPFID +YM YMFKYDSTHG +KG++
Sbjct: 9 TVGINGFGRIGRLVLR-ACMEKGVKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEF-R 66
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
+ L ++ I V+ ++P +IPW G YVVES+GV+ +I AS H+ GA++VVISA
Sbjct: 67 NGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISA 126
Query: 211 PSADAPMFVVGVNEKTYKPN-MNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATT 269
PS DAPMFV+GVNE Y P MNIVSNASCTTNCLAPLAKV+HE FGI+EGLMTTVH+ T
Sbjct: 127 PSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYT 186
Query: 270 ATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK--------------------------- 302
ATQKTVDGPS K WR GRGA QNIIP+STGAAK
Sbjct: 187 ATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSV 246
Query: 303 ---------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIG 353
A Y +K A+K A++G + GIL YT+++VVS DF+GD+ SSIFDAKAGI
Sbjct: 247 VDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIA 306
Query: 354 LSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAAHN 389
L+ +F+KL+SWYDNE+GYS+RV+DL+ +M A N
Sbjct: 307 LNDNFVKLISWYDNEYGYSHRVVDLLRYMFSRDAEN 342
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 590 bits (1524), Expect = 0.0
Identities = 184/343 (53%), Positives = 224/343 (65%), Gaps = 40/343 (11%)
Query: 80 TIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTH 139
TK+GINGFGRIGRLV R A R D++VVA+NDPF+D ++ Y+ KYDS H
Sbjct: 2 AHHHHHHMAATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVH 61
Query: 140 GVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHM 199
G F + D L I K + VF+++DP++IPWG VD V ES+GVF T AS+H+
Sbjct: 62 GQFPCEVTH-ADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHL 120
Query: 200 KGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGIL 258
KGGAKKV++SAP D P++V+G+N Y IVSNASCTTNCLAPLAKV+++ FGI+
Sbjct: 121 KGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIV 180
Query: 259 EGLMTTVHATTATQKTVDGPSM--KDWRGGRGASQNIIPSSTGAAK-------------- 302
EGLMTTVHA+TA Q VDGPS KDWR GR A NIIP+STGAAK
Sbjct: 181 EGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLT 240
Query: 303 ----------------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGD 340
A YE+V IK A+EG LKGILGYT+++VVS DFV D
Sbjct: 241 GVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHD 300
Query: 341 SRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
+RSSIFD KAG+ L+ +F KLVSWYDNEWGYSNRVLDL H+
Sbjct: 301 NRSSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHIT 343
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 587 bits (1517), Expect = 0.0
Identities = 187/334 (55%), Positives = 227/334 (67%), Gaps = 41/334 (12%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
+GINGFGRIGRLVLR R+D+ VVA+NDPF+D +YMAY+ KYDS HG F GT+ V
Sbjct: 18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVE-V 76
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
L INGK++KVF +DPAEIPWG G V ES+GVFTT KAS H+KGGAKKV+IS
Sbjct: 77 SGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 136
Query: 210 APSAD-APMFVVGVNEKTYKP-NMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHA 267
AP D PM+V+GVN Y P N++SNASCTTNCLAPLAK+++++FGI+EGLMTTVH+
Sbjct: 137 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 196
Query: 268 TTATQKTVDGPSM--KDWRGGRGASQNIIPSSTGAAK----------------------- 302
TA Q TVDGPS KDWR GR A NIIP+STGAAK
Sbjct: 197 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 256
Query: 303 -------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAK 349
AS E++ A+K AS G +KGI+GYT +DVVS DF+G SSIFD
Sbjct: 257 DVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKN 316
Query: 350 AGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
A I L+ SF+KL+SWYDNE GYSNR++DL ++A
Sbjct: 317 ACIALNDSFVKLISWYDNESGYSNRLVDLAVYVA 350
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 586 bits (1514), Expect = 0.0
Identities = 200/332 (60%), Positives = 239/332 (71%), Gaps = 37/332 (11%)
Query: 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTIN 147
G KVG+NGFGRIGRLV R A VD+VA+NDPFID YM YMF+YDSTHG F GT+
Sbjct: 2 GKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVK 61
Query: 148 VVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVV 207
++ L ING I +F +RDP++I WGD G +YVVES+GVFTT+ KA AH++GGAK+V+
Sbjct: 62 A-ENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 120
Query: 208 ISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHA 267
ISAPSADAPMFV+GVN + Y ++ I+SNASCTTNCLAPLAKV+H+ FGI+EGLMTTVHA
Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 180
Query: 268 TTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK------------------------- 302
TATQKTVDGPS K WR GRGA QNIIP+STGAAK
Sbjct: 181 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV 240
Query: 303 -----------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAG 351
A Y+D+K +K ASEG LKGILGYT+ VVS+DF D+ SS FDA AG
Sbjct: 241 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG 300
Query: 352 IGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
I L+ F+KL+SWYDNE+GYSNRV+DL+ HMA
Sbjct: 301 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 332
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 585 bits (1510), Expect = 0.0
Identities = 193/330 (58%), Positives = 234/330 (70%), Gaps = 40/330 (12%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
KVGINGFGRIGR+V R A R D+++VA+ND +DA YMAYM KYDSTHG F GT+ V
Sbjct: 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEV-K 60
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
D L +NGK I+V ++RDPA + W + GVD V E++G+F T A H+ GAKKVV++
Sbjct: 61 DGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 120
Query: 211 PSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATT 269
PS D PMFV G N Y +IVSNASCTTNCLAPLAKV+++ FGI+EGLMTTVHATT
Sbjct: 121 PSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATT 179
Query: 270 ATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK--------------------------- 302
ATQKTVDGPS KDWRGGRGASQNIIPSSTGAAK
Sbjct: 180 ATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSV 239
Query: 303 ---------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIG 353
A+YE +KAA+K A+EG +KG+LGYT++DVVS DF G+ +S+FDAKAGI
Sbjct: 240 VDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIA 299
Query: 354 LSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
L+ +F+KLVSWYDNE GYSN+VLDLI H++
Sbjct: 300 LNDNFVKLVSWYDNETGYSNKVLDLIAHIS 329
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 568 bits (1467), Expect = 0.0
Identities = 172/351 (49%), Positives = 221/351 (62%), Gaps = 55/351 (15%)
Query: 90 TKVGINGFGRIGRLVLRVA----AFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGT 145
KVGINGFGRIGR+V + ++DVVAV D DA+Y AY +YD+ HG FK
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 146 INVV-------DDSTLEINGKLIK-VFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASA 197
+ D TL +NG I V ++R+PA++PWG GV+YV+ES+G+FT A A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 198 HMKGGAKKVVISAP-SADAPMFVVGVNEKTYKP-NMNIVSNASCTTNCLAPLAKV-VHEE 254
H++GGA+KVVISAP S A V+GVN Y P ++VSNASCTTNCLAP+ V V E
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEG 182
Query: 255 FGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK------------ 302
FG+ GLMTT+H+ TATQKTVDG S+KDWRGGR A+ NIIPS+TGAAK
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 303 ------------------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFV 338
S +++ AA+K AS+ +KGILGYTDE++VS DF+
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFI 302
Query: 339 GDSRSSIFDAKAGIGLSAS----FMKLVSWYDNEWGYSNRVLDLIEHMALV 385
D+RSSI+D+KA + + F K+VSWYDNEWGYS+RV+DL+ HMA
Sbjct: 303 NDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASK 353
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 517 bits (1334), Expect = 0.0
Identities = 152/331 (45%), Positives = 208/331 (62%), Gaps = 41/331 (12%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
KVGINGFGRIGR V R A D++VVAVND DA +A++ KYDS HG ++V +
Sbjct: 3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDAEVSV-N 60
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
+ L +NGK I V ++RDP + WG+ GVD VVES+G FT A+ H++ GAKKV+ISA
Sbjct: 61 GNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 120
Query: 211 PSADA-PMFVVGVNEKTYKP-NMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHAT 268
P+ + V+GVN+ Y P +++SNASCTTNCLAP AKV+HE+FGI+ G+MTTVH+
Sbjct: 121 PAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSY 180
Query: 269 TATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK-------------------------- 302
T Q+ +D P KD R R A+++IIP++TGAAK
Sbjct: 181 TNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVS 239
Query: 303 ----------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGI 352
+ E+V AA+K A+EG LKGIL Y++E +VS D+ G + SS DA + +
Sbjct: 240 VVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTM 299
Query: 353 GLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
+ +K+VSWYDNE GYS+RV+DL ++A
Sbjct: 300 VIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 498 bits (1286), Expect = e-178
Identities = 133/339 (39%), Positives = 191/339 (56%), Gaps = 48/339 (14%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
KV INGFGRIGRL R + ++VVAVND D +A++ KYD+ G F G + VV
Sbjct: 5 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVV 63
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
D +NGK +K FS+ D +++PW D +D V+E +G +T KA AH++ GAKKV+IS
Sbjct: 64 DGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS 122
Query: 210 APS-ADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHAT 268
AP+ D V N + + +VS ASCTTN LAP+AKV++++FG++EGLMTT+HA
Sbjct: 123 APATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAY 182
Query: 269 TATQKTVDGPSMK-DWRGGRGASQNIIPSSTGAAK------------------------- 302
T Q T D P K D R R A++NIIP+STGAAK
Sbjct: 183 TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG 242
Query: 303 ------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKA 350
+ E V A+K AS S GYT++++VS+D VG + S+FDA
Sbjct: 243 SLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQ 298
Query: 351 GIGLSAS---FMKLVSWYDNEWGYSNRVLDLIEHMALVA 386
+S +K+ +WYDNE Y+ +++ + ++A ++
Sbjct: 299 TRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELS 337
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 496 bits (1279), Expect = e-177
Identities = 137/332 (41%), Positives = 186/332 (56%), Gaps = 41/332 (12%)
Query: 91 KVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINV 148
KV INGFGRIGR LR R +DVV +ND K +++ KYDS G F +
Sbjct: 3 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKT 61
Query: 149 VDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208
DS + ++GK+IKV S R+P +PWGD G+D V+E +GVF A H++ GAKKV+I
Sbjct: 62 AGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI 121
Query: 209 SAPSADA-PMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHA 267
+AP P +VVGVNE+ Y I+SNASCTTNCLAP KV+ ++FGI++G MTT H+
Sbjct: 122 TAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHS 181
Query: 268 TTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK------------------------- 302
T Q+ +D +D R R A NI+P+STGAAK
Sbjct: 182 YTGDQRLLDAS-HRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNV 240
Query: 303 -----------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAG 351
E+V AA + +++ LKGIL DE +VS DF SS D+
Sbjct: 241 SVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLT 300
Query: 352 IGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
+ + +K+++WYDNEWGYS RV+DL + +A
Sbjct: 301 MVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 332
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 490 bits (1265), Expect = e-175
Identities = 142/345 (41%), Positives = 203/345 (58%), Gaps = 48/345 (13%)
Query: 83 KSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVF 142
+++ G+ K+ INGFGRIGR V + AF +D+VA+ND D K +A++ KYDST GV+
Sbjct: 15 QTQGPGSMKLAINGFGRIGRNVFK-IAFERGIDIVAIND-LTDPKTLAHLLKYDSTFGVY 72
Query: 143 KGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASA----H 198
+ D + ++G+ IK+ ++RDP +PW G+D V+ES+GVF++ H
Sbjct: 73 NKKVES-RDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDH 131
Query: 199 MK-GGAKKVVISAPSADA-PMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFG 256
+ GAKKV+++ P+ D V+GVN+ ++ VSNASCTTNCLAPLAKV+HE FG
Sbjct: 132 VNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFG 191
Query: 257 ILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK-------------- 302
I +GLMTTVHA T Q+ +D P D R R A+ +IIP+STGAAK
Sbjct: 192 IEQGLMTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLN 250
Query: 303 -----------------------GASYEDVKAAIKYASEG-SLKGILGYTDEDVVSNDFV 338
+ E++ + ++ ASE LKGILGYT++ +VS+D
Sbjct: 251 GTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIK 310
Query: 339 GDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
G+S SSI D + L F K++SWYDNE+GYS RV+DL + +
Sbjct: 311 GNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLV 355
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 490 bits (1264), Expect = e-175
Identities = 134/332 (40%), Positives = 197/332 (59%), Gaps = 41/332 (12%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
T+V INGFGRIGR+V R A ++VA+N + ++ +A++ KYD+ HG F GT+
Sbjct: 5 TRVAINGFGRIGRMVFRQAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFDGTVEAF 63
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
+D L ++GK+I++ + RDP E+PW D GV+ V+E++G F + KA H++ GAKKV+++
Sbjct: 64 EDH-LLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILT 122
Query: 210 APSADA-PMFVVGVNEKTYKP-NMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHA 267
AP + VVGVNE ++SNASCTTNCLAP+ KV+ E+FGI GLMTTVHA
Sbjct: 123 APGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHA 182
Query: 268 TTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK------------------------- 302
T QK +D P KD R R Q+IIP++TGAAK
Sbjct: 183 YTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNV 241
Query: 303 -----------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAG 351
+ E + A K + G+LKGI+ +++E +VS DF ++ S+I D +
Sbjct: 242 SLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDGLST 301
Query: 352 IGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
+ + +K+++WYDNEWGYS RV+DL+ +
Sbjct: 302 MVMGDRKVKVLAWYDNEWGYSRRVVDLVTLVV 333
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 487 bits (1257), Expect = e-174
Identities = 149/331 (45%), Positives = 198/331 (59%), Gaps = 43/331 (12%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
KVGINGFGRIGR V R V+V +ND D K +A++ KYDS + F G + D
Sbjct: 2 KVGINGFGRIGRQVFR-ILHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFPGEVAY-D 58
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
D L ++GK I+ + +DP EIPW + GV V+ES+GVFT KA AH++GGAKKV+I+A
Sbjct: 59 DQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITA 118
Query: 211 PSADA-PMFVVGVNEKTYKP-NMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHAT 268
P+ V+GVN + Y P +I+SNASCTTN LAP+ KV+ E FG+ + LMTTVH+
Sbjct: 119 PAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSY 178
Query: 269 TATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK-------------------------- 302
T Q+ +D P KD R R A+ NIIP++TGAAK
Sbjct: 179 TNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGS 237
Query: 303 ----------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGI 352
+ E+V AA+K A+EG LKGIL YT++++V D V D SSI DAK
Sbjct: 238 ISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTK 297
Query: 353 GLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
L + +K+ +WYDNEWGY+NRV DL+E +
Sbjct: 298 ALG-NMVKVFAWYDNEWGYANRVADLVELVL 327
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 487 bits (1257), Expect = e-174
Identities = 148/340 (43%), Positives = 212/340 (62%), Gaps = 50/340 (14%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
KVGINGFGRIGR R + R+++++VA+ND DAK++A++ KYDS HG+FKG++
Sbjct: 3 IKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFKGSVEAK 61
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
DDS + ++GK IKVF+++DP++IPWGD GVD V+E++GVF AS H++GGAKKV+I+
Sbjct: 62 DDS-IVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIIT 120
Query: 210 APSADA-PMFVVGVNEKTYKP-NMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHA 267
AP+ + V+GVNE+ Y P NI+SNASCTTNCLAP KV++E FG+ +G M TVHA
Sbjct: 121 APAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVHA 180
Query: 268 TTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK------------------------- 302
T Q+ +D P KD+R R A+ NI+P++TGAAK
Sbjct: 181 YTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPDG 239
Query: 303 ------------GASYEDVKAAIKYASEG-------SLKGILGYTDEDVVSNDFVGDSRS 343
+S E+V + A++ LK IL Y ++ +VS D VG+ S
Sbjct: 240 SLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPHS 299
Query: 344 SIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
+IFDA + + + + +WYDNEWGYS R+ DL+ ++A
Sbjct: 300 AIFDAPLTQ-VIDNLVHIAAWYDNEWGYSCRLRDLVIYLA 338
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 483 bits (1246), Expect = e-172
Identities = 132/335 (39%), Positives = 196/335 (58%), Gaps = 44/335 (13%)
Query: 90 TKVGINGFGRIGRLVLR--VAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTIN 147
+V INGFGRIGR LR D++VVA+N+ DA+ A++ +YDS G F I+
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFNADIS 61
Query: 148 VVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVV 207
++S + +NGK +K+ R+P +PW ++ +D V+ES+GVF T AS H++ GAKKV+
Sbjct: 62 YDENS-ITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 208 ISAPS--ADAPMFVVGVNEKTYKP-NMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTT 264
I+AP +V+GVN+ Y+ + ++SNASCTTNCLAP+AKV+H+ FGI++G MTT
Sbjct: 121 ITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTT 180
Query: 265 VHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK---------------------- 302
H+ T Q+ +D +D R R A+ NI+P++TGAAK
Sbjct: 181 THSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPT 239
Query: 303 --------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 348
E V ++ AS+ ++KGI+ Y+D +VS+DF G SSI D+
Sbjct: 240 PNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDS 299
Query: 349 KAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
+ + +K+++WYDNEWGYS RV+DL E A
Sbjct: 300 SLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAA 334
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 478 bits (1233), Expect = e-170
Identities = 132/335 (39%), Positives = 196/335 (58%), Gaps = 44/335 (13%)
Query: 90 TKVGINGFGRIGRLVLR--VAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTIN 147
+V INGFGRIGR LR D++VVA+N+ DA+ A++ +YDS G F I+
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFNADIS 61
Query: 148 VVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVV 207
++S + +NGK +K+ R+P +PW ++ +D V+ES+GVF T AS H++ GAKKV+
Sbjct: 62 YDENS-ITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 208 ISAPS--ADAPMFVVGVNEKTYKP-NMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTT 264
I+AP +V+GVN+ Y+ + ++SNASCTTNCLAP+AKV+H+ FGI++G MTT
Sbjct: 121 ITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTT 180
Query: 265 VHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK---------------------- 302
H+ T Q+ +D +D R R A+ NI+P++TGAAK
Sbjct: 181 THSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPT 239
Query: 303 --------------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 348
E V ++ AS+ ++KGI+ Y+D +VS+DF G SSI D+
Sbjct: 240 PNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDS 299
Query: 349 KAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
+ + +K+++WYDNEWGYS RV+DL E A
Sbjct: 300 SLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAA 334
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 471 bits (1214), Expect = e-167
Identities = 148/332 (44%), Positives = 205/332 (61%), Gaps = 42/332 (12%)
Query: 91 KVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINV 148
+V INGFGRIGRLV R+ R D++VVA+ND D K +A++ KYDS H F G +
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPGKVEY 60
Query: 149 VDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208
++S L ++GK IKVF++ DP+++PW D GVD+V+ES+GVF KA H++ GAKKV+I
Sbjct: 61 TENS-LIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII 119
Query: 209 SAPSADA-PMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHA 267
+AP+ V+G NE KP I+S ASCTTN +AP+ KV+HE+FGI+ G++TTVH+
Sbjct: 120 TAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHS 179
Query: 268 TTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK------------------------- 302
T Q+ +D P KD R R A+ NIIP++TGAAK
Sbjct: 180 YTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDG 238
Query: 303 -----------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAG 351
+ E+V A +K A+EG LKGI+GY DE +VS+D +G + S IFDA
Sbjct: 239 SITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATIT 298
Query: 352 IGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
+ +K+ SWYDNE+GYSNRV+D +E +
Sbjct: 299 NVIGGKLVKVASWYDNEYGYSNRVVDTLELLL 330
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 445 bits (1146), Expect = e-157
Identities = 132/333 (39%), Positives = 194/333 (58%), Gaps = 42/333 (12%)
Query: 90 TKVGINGFGRIGRLVLR--VAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTIN 147
+V INGFGRIGR +LR V + R D+ VVA+ND + A++ +YDS HG F +
Sbjct: 3 VRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLG-PVETNAHLLRYDSVHGRFPKEVE 61
Query: 148 VVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVV 207
V D+ +++ IKV + R+PAE+PW + VD +E +G+FT+ KA+ H++ GAK+V+
Sbjct: 62 VAGDT-IDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVI 120
Query: 208 ISAPSADA-PMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVH 266
+SAP+ A V GVN + ++SNASCTTNCLAP+A+V+++ GI +G MTT+H
Sbjct: 121 VSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTIH 180
Query: 267 ATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKG----------------------- 303
+ T Q T+D KD R A+ ++IP+STGAAK
Sbjct: 181 SYTGDQPTLDTMH-KDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTPN 239
Query: 304 -------------ASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKA 350
+ E+V AI+ A+ G LKGILGYTDE +VS+DF DS SS+F
Sbjct: 240 VSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHTDQ 299
Query: 351 GIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
+ + ++++SWYDNEWG+S+R+ D +
Sbjct: 300 TKVMDGTMVRILSWYDNEWGFSSRMSDTAVALG 332
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 431 bits (1110), Expect = e-152
Identities = 114/335 (34%), Positives = 169/335 (50%), Gaps = 44/335 (13%)
Query: 90 TKVGINGFGRIGRLVLRVA---AFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTI 146
+V INGFGRIGR V+R R ++ VVA+N+ DA MA++ KYD++HG F +
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELA-DAAGMAHLLKYDTSHGRFAWEV 61
Query: 147 NVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKV 206
+ L + I+V +R +PW + GVD V++ +GV+ + AH+ GAKKV
Sbjct: 62 RQ-ERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 207 VISAPSADA--PMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTT 264
+ S P ++ V GVN+ + IVSNASCTTNC+ P+ K++ + +GI G +TT
Sbjct: 121 LFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTT 180
Query: 265 VHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKG--------------------- 303
+H+ Q+ +D D R R ASQ+IIP T A G
Sbjct: 181 IHSAMHDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPT 239
Query: 304 ---------------ASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 348
+V ++ A++G+ GI+ YT+ +VS DF D S+I D
Sbjct: 240 INVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDG 299
Query: 349 KAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
A +K + W DNEWG++NR+LD MA
Sbjct: 300 TQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 426 bits (1097), Expect = e-150
Identities = 140/334 (41%), Positives = 189/334 (56%), Gaps = 45/334 (13%)
Query: 91 KVGINGFGRIGRLVLRVA---AFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTIN 147
+V ING+GRIGR +LR D+++VA+ND D K A++ +YD+ HG F GT++
Sbjct: 3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLG-DPKTNAHLTRYDTAHGKFPGTVS 61
Query: 148 VVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVV 207
V + S + +NG I+V + R+PA++PWG VD V+E +G FTT KA AH+KGGAKKV+
Sbjct: 62 V-NGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 208 ISAPSADA--PMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTV 265
ISAP V GVN T K ++SNASCTTNCLAPL K ++++ G+ +GLMTTV
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGLMTTV 180
Query: 266 HATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKG---------------------- 303
HA T Q D +D R R A+ ++IP+ TGAA
Sbjct: 181 HAYTNNQVLTDVYH-EDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPTI 239
Query: 304 --------------ASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAK 349
+ E+V +K ASEG LKGIL Y E +VS D+ D SS DA
Sbjct: 240 NVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDAS 299
Query: 350 AGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 383
+S +K+ SWYDNEWG+SNR+LD +
Sbjct: 300 LTK-VSGRLVKVSSWYDNEWGFSNRMLDTTVALM 332
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 320 bits (822), Expect = e-108
Identities = 45/342 (13%), Positives = 99/342 (28%), Gaps = 77/342 (22%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
V ING+G +G+ V A +DD+ V+ V+ D + + K + + + +
Sbjct: 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFE 62
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
+ +E+ G + + + D V++ + + + G K +
Sbjct: 63 KAGIEVAGTVDDMLDE------------ADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGG 110
Query: 211 PSADAP--MFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHAT 268
+ F N + + SC T L K +H+ FGI + V
Sbjct: 111 EKHEDIGLSFNSLSNYEESY-GKDYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVRRG 169
Query: 269 TATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK-------------------------- 302
+ GP IIP+
Sbjct: 170 ADPAQVSKGP-----------INAIIPNPPKLPSHHGPDVKTVLDINIDTMAVIVPTTLM 218
Query: 303 -----------GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAG 351
+ +D+ + + IL ++ + S + + + ++
Sbjct: 219 HQHNVMVEVEETPTVDDIIDVFEDTP----RVILISAEDGLTSTAEIMEYAKELGRSRND 274
Query: 352 IGLSASFMKLVSWYDN----------EWGYSNRVLDLIEHMA 383
+ + + ++ DN E +D + +
Sbjct: 275 LFEIPVWRESITVVDNEIYYMQAVHQESDIVPENVDAVRAIL 316
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 262 bits (671), Expect = 2e-85
Identities = 50/343 (14%), Positives = 98/343 (28%), Gaps = 71/343 (20%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
KV ING+G IG+ V + +DD++V+ V + A + + +K + +
Sbjct: 3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTK--TKPDFEARL----AVEKGYKLFVAIP 56
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
D+ + + + +I D VV+ + K K ++
Sbjct: 57 DNE-RVKLFEDAGIPVEGTILDIIED---ADIVVDGAPKKIGKQNLENIYKPHKVKAILQ 112
Query: 210 APSADA---PMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVH 266
F + + V SC T L + ++ I + + V
Sbjct: 113 GGEKAKDVEDNFNALWSYNRCY-GKDYVRVVSCNTTGLCRILYAINSIADIKKARIVLVR 171
Query: 267 ATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK------------------------ 302
GP + N + +
Sbjct: 172 RAADPNDDKTGPV-------NAITPNPVTVPSHHGPDVVSVVPEFEGKILTSAVIVPTTL 224
Query: 303 ------------GASYEDVKAAIKYASE-GSLKGILGYTDEDVV---SNDFVGDSRSSIF 346
S +D+ AIK +++ G++ + D G R I
Sbjct: 225 MHMHTLMVEVDGDVSRDDILEAIKKTPRIITVRAEDGFSSTAKIIEYGRDL-GRLRYDIN 283
Query: 347 D---AKAGIGLSASFMKLVSWYDNEWGYSNRV---LDLIEHMA 383
+ + I + + + L+ E S + +D I M
Sbjct: 284 ELVVWEESINVLENEIFLMQAVHQE---SIVIPENIDCIRAML 323
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 253 bits (647), Expect = 5e-82
Identities = 52/338 (15%), Positives = 94/338 (27%), Gaps = 72/338 (21%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
KVG+NG+G IG+ V +DD++++ + + AY K +
Sbjct: 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEFIP 60
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
+ + VD +V+++ + K G K +
Sbjct: 61 R----------FEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQG 110
Query: 210 APSADAP--MFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHA 267
AD FV N + N V SC T L + E + +M A
Sbjct: 111 GEKADVAEVSFVAQANYEAAL-GKNYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRAA 169
Query: 268 TTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAA-------------------------- 301
K RG A + + +
Sbjct: 170 DPNDTK----------RGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLMHVH 219
Query: 302 -------KGASYEDVKAAIKYASEGSL----KGILGYTDEDVVSNDFVGDSRSSIFD--- 347
K + +DV + + L KG + D +++++
Sbjct: 220 SVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDL-HREWNNLYEIAV 278
Query: 348 AKAGIGLSASFMKLVSWYDNEWGYSNRVL---DLIEHM 382
K I + + + + E S+ + D I M
Sbjct: 279 WKESINIKGNRLFYIQAVHQE---SDVIPENIDAIRAM 313
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 165 bits (418), Expect = 6e-48
Identities = 42/335 (12%), Positives = 87/335 (25%), Gaps = 65/335 (19%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHG-VFKGTINVV 149
V +NG+G IG+ V + D+ +V V Y A++ V + +I
Sbjct: 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAK--TSPNYEAFIAHRRGIRIYVPQQSIKKF 60
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
++S + + G + + D VV+++ +++ +
Sbjct: 61 EESGIPVAGTVEDLIK------------TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQG 108
Query: 210 APSADAPMFVVGVNEKTYKP-NMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHAT 268
A+ + + SC T L V++ + + T V
Sbjct: 109 GEKAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVSKVEKVRATIVRRA 168
Query: 269 TATQKTVDGPSMKDWRGGRGASQNIIPSSTGAA--------------------------- 301
++ GP +PS
Sbjct: 169 ADQKEVKKGPI-----NSLVPDPATVPSHHAKDVNSVIRNLDIATMAVIAPTTLMHMHFI 223
Query: 302 -----KGASYEDVKAAIKYASEGSL----KGILGYTDEDVVSND--FVGDSRSSIFDAKA 350
+D+ + ++ L + V+ D + +
Sbjct: 224 NITLKDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARDLKRDRNDIPEVMIFSD 283
Query: 351 GIGLSASFMKLVSWYDNEWGYSNRVL---DLIEHM 382
I + + L+ E S V D I
Sbjct: 284 SIYVKDDEVMLMYAVHQE---SIVVPENIDAIRAS 315
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB:
1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 37.6 bits (87), Expect = 0.004
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119
+V I G+G +GR V ++ A + D+D+V +
Sbjct: 5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGI 33
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 36.9 bits (86), Expect = 0.008
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 91 KVGINGFGRIGRL-VLRVAAFRDDVDVVAVNDPFIDA 126
++G+ G G IG+ + R+ ++VAV D +A
Sbjct: 4 RIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEA 40
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 36.8 bits (85), Expect = 0.009
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 86 SDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121
D + I G+G IGR L+ D ++ +
Sbjct: 6 DDKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVR 41
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 36.9 bits (86), Expect = 0.009
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 91 KVGINGFGRIGRL-VLRVAAFRDDVDVVAVNDPFIDA 126
K GI G G IG + R+A V+VVAV D
Sbjct: 25 KAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGR 61
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein
translocation, periplasmic oxidoreductase, signal
peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas
mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A*
1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Length = 433
Score = 36.7 bits (85), Expect = 0.010
Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 4/102 (3%)
Query: 21 TSSPSDRVKGSPTAAFSRN--LNTSSIFGTSVPSGSSSSSLQTCAAKGIQPIRATATEIP 78
S +D S T +R + S + A P +P
Sbjct: 14 AVSATDD-NASRTPNLNRRALVGGGVGLAARGALASGLQAATLPAGASQVPTTPAGRPMP 72
Query: 79 PTIQKSRSDGNTKVGINGFGRIGRL-VLRVAAFRDDVDVVAV 119
I+ D I G G+ +L A + A+
Sbjct: 73 YAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEAL 114
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding
rossmann fold, structural genomics; HET: MSE PG4 PGE;
1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 36.2 bits (84), Expect = 0.013
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDA 126
++ + G GR G+ +R A +V + D
Sbjct: 12 RLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDN 47
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 36.1 bits (84), Expect = 0.017
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDA 126
++ + G GRIG + A D+++V + DPFI+
Sbjct: 6 RIALFGAGRIGHVHAANIAANPDLELVVIADPFIEG 41
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 35.7 bits (83), Expect = 0.020
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 91 KVGINGFGRIGRL-VLRVAAFRDDVDVVAVNDPFIDA 126
+ I G GR+G + V +VA +
Sbjct: 10 RAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQ 46
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 34.9 bits (81), Expect = 0.036
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 91 KVGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDAKYMAYM 132
+GI G GRIGR V +F + + DP I + A
Sbjct: 167 TLGILGLGRIGREVATRMQSF--GMKTIG-YDPIISPEVSASF 206
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 34.9 bits (81), Expect = 0.039
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 92 VGINGFGRIGRLV-LRVAAFRDDVDVVAVNDPFIDA 126
+GI G GR+G+ V LR AF +V+ DP++
Sbjct: 171 LGIIGLGRVGQAVALRAKAF--GFNVLF-YDPYLSD 203
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 35.0 bits (81), Expect = 0.040
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFI 124
VG GRIG VLR F DV + D
Sbjct: 194 VGTVAAGRIGLAVLRRLAPF--DVHLHY-TDRHR 224
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 34.6 bits (80), Expect = 0.040
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 91 KVGINGFGRIGRLV-LRVAAFRDDVDVVAVNDPFIDA 126
K+G+ G G I + L + + + V P
Sbjct: 8 KMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVK 44
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 34.5 bits (80), Expect = 0.050
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPF 123
+G G GRIG+L+L+ F +++ +D
Sbjct: 167 IGTVGAGRIGKLLLQRLKPF--GCNLLY-HDRL 196
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 34.1 bits (79), Expect = 0.055
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDAKYMAYMFKYDS 137
VG+ G G IG++ +++ F V+ D F + + + DS
Sbjct: 149 VGVVGTGHIGQVFMQIMEGF--GAKVIT-YDIFRNPELEKKGYYVDS 192
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 34.0 bits (79), Expect = 0.055
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDAK 127
+GI GFGRIG V ++A A ++++ DP+ + +
Sbjct: 145 IGIIGFGRIGYQVAKIANAL--GMNILL-YDPYPNEE 178
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A
1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A*
1pu2_A* 1q2x_A*
Length = 367
Score = 34.5 bits (80), Expect = 0.056
Identities = 16/115 (13%), Positives = 32/115 (27%), Gaps = 13/115 (11%)
Query: 152 STLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211
+ G + D + +D +V G T + G + I A
Sbjct: 43 AAPSFGGTTGTLQDAFDLEAL----KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAA 98
Query: 212 SA-----DAPMFVVGVN----EKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGI 257
S+ DA + + VN + +CT + + + +
Sbjct: 99 SSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLV 153
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 34.2 bits (79), Expect = 0.063
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDAK 127
G+ G G++G ++ V V+ DP A+
Sbjct: 119 YGVVGAGQVGGRLVEVLRGL--GWKVLV-CDPPRQAR 152
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 34.2 bits (79), Expect = 0.065
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDAKYMAYM 132
VG+ G GRIG+LV + AF VVA DP++ A +
Sbjct: 145 VGVVGLGRIGQLVAQRIAAF--GAYVVA-YDPYVSPARAAQL 183
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural
genomics; 2.70A {Thermus thermophilus}
Length = 331
Score = 34.0 bits (79), Expect = 0.070
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 152 STLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211
L G+ I V +P G VD V+ S+G + AKA +GGA +V+
Sbjct: 41 VRLAFRGEEIPV------EPLPEGPLPVDLVLASAGGGISRAKALVWAEGGA--LVVDNS 92
Query: 212 SA-----DAPMFVVGVNEKTYKPNMNIVSNASCTT-NCLAPLAKVVHEEFGI 257
SA P+ V VN + + I++N +CTT L +H F
Sbjct: 93 SAWRYEPWVPLVVPEVNREKIFQHRGIIANPNCTTAILAMAL-WPLHRAFQA 143
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 33.8 bits (78), Expect = 0.076
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDA 126
++G+ G GRIG + DD + A++D D
Sbjct: 4 RIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDR 39
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 33.8 bits (78), Expect = 0.076
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDAKYMAYMFKYDS 137
+G+ G GRIG V AF + V+ D Y S
Sbjct: 144 LGVIGTGRIGSRVAMYGLAF--GMKVLC-YDVVKREDLKEKGCVYTS 187
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 33.8 bits (78), Expect = 0.079
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 91 KVGINGFGRIGRLV-LRVAAFRDDVDVVAVNDPFIDA 126
++G+ G G I + L V A D + P
Sbjct: 7 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAK 43
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 33.5 bits (76), Expect = 0.084
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121
VG+ G+G IG+ + R+ ++ A+ D
Sbjct: 2 LVGLIGYGAIGKFLAEWLE-RNGFEIAAILD 31
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase,
probable hydrolase, PS aeruginosa, structurual genomics;
2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Length = 340
Score = 33.6 bits (78), Expect = 0.085
Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 13/112 (11%)
Query: 152 STLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211
+ ++V D + V ++ + A A G VI
Sbjct: 47 QRMGFAESSLRV---GDVDSFDFS--SVGLAFFAAAAEVSRAHAERARAAGC--SVIDLS 99
Query: 212 SA----DAPMFVVGVNEKTYK--PNMNIVSNASCTTNCLAPLAKVVHEEFGI 257
A AP +V VN + ++S+ L + +
Sbjct: 100 GALEPSVAPPVMVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLLATLDC 151
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 33.7 bits (78), Expect = 0.094
Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 13/115 (11%)
Query: 152 STLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211
+ D + +D V+ G T A + G K I A
Sbjct: 42 PAPNFGKDAGMLHDAFDIESLK----QLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAA 97
Query: 212 SA-----DAPMFVVGVN----EKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGI 257
S +A + + VN +CT + + ++E +
Sbjct: 98 STLRMDKEAIITLDPVNLKQILHGIHHGTKTFVGGNCTVSLMLMALGGLYERGLV 152
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 33.4 bits (77), Expect = 0.10
Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 29/145 (20%)
Query: 91 KVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFID-AKYMAYMFKYDSTHGVFKGTIN 147
V I G G IG L +++A V + A+ + +T T++
Sbjct: 185 TVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAE------EVGATA-----TVD 233
Query: 148 VVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVV 207
+E + + GVD V+E +GV T+ +++ K G V+
Sbjct: 234 PSAGDVVEAIAGPVGL-----------VPGGVDVVIECAGVAETVKQSTRLAKAGGTVVI 282
Query: 208 ISAPSADA----PMFVVGVNEKTYK 228
+ F + E
Sbjct: 283 LGVLPQGEKVEIEPFDILFRELRVL 307
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 32.9 bits (76), Expect = 0.12
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDAK 127
+GI G+G IGR V +A AF + V+A +
Sbjct: 125 LGILGYGGIGRRVAHLAKAF--GMRVIA-YTRSSVDQ 158
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 33.4 bits (77), Expect = 0.12
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDAKYMAYMF 133
+GI G G +G + A + + DP A+ F
Sbjct: 122 IGIVGVGNVGSRLQTRLEAL--GIRTLL-CDPPRAARGDEGDF 161
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol,
oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Length = 332
Score = 33.0 bits (76), Expect = 0.13
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDA 126
+ G+ G I R + A +VV++ +
Sbjct: 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAER 37
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 32.9 bits (76), Expect = 0.13
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDAK 127
+GI GFGRIG V +A A + V+A D +
Sbjct: 145 IGIVGFGRIGTKVGIIANAM--GMKVLA-YDILDIRE 178
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 33.0 bits (76), Expect = 0.14
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFI 124
+ G GRIG VL F + + +
Sbjct: 167 IATIGAGRIGYRVLERLVPF--NPKELLY-YDYQ 197
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 32.1 bits (74), Expect = 0.23
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDA 126
VGI G G IG+ + R F V +
Sbjct: 149 VGILGMGAIGKAIARRLIPF--GVKLYY-WSRHRKV 181
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 32.5 bits (74), Expect = 0.24
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 91 KVGINGFGRIGRL-VLRVAAFRDDVDVVAVNDPFIDA 126
+ GI G G G + + D +VA DP D
Sbjct: 4 RFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDV 40
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease
(ssgcid); 1.55A {Burkholderia thailandensis}
Length = 377
Score = 32.2 bits (74), Expect = 0.25
Identities = 14/115 (12%), Positives = 28/115 (24%), Gaps = 13/115 (11%)
Query: 152 STLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211
+ ++ D ++ G T G I A
Sbjct: 46 KAPSFAKNETTLKDATSIDDLK----KCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAA 101
Query: 212 SA-----DAPMFVVGVN----EKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGI 257
S+ DA + + VN + +CT + + + E +
Sbjct: 102 SSLRMKDDAVIILDPVNLNVIKDALVNGTKNFIGGNCTVSLMLMALGGLFRENLV 156
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 32.2 bits (74), Expect = 0.26
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 35/111 (31%)
Query: 206 VVISAPSA-----DAPMFVVGVN----------EKTYKPNMNIVSNASCTTNCLAPLAKV 250
+V+S S D P+ +N ++ +V N +CT ++ K
Sbjct: 103 IVVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKP 162
Query: 251 VHEEFGILEGLMTTVHATT------ATQKTVDGPSMKDWRGGRGASQNIIP 295
+ E + + TT A + +++ NIIP
Sbjct: 163 LIEIATK-----SKIIITTLQAVSGAGYNGISFMAIEG---------NIIP 199
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 32.1 bits (73), Expect = 0.29
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122
V + G GR G + LR + +
Sbjct: 9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF 40
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 32.2 bits (74), Expect = 0.30
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 145 TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204
+ V+ + E + K I +G +E +GV ++IA A +K G K
Sbjct: 228 VTHKVERLSAEESAKKIVES---------FGGIEPAVALECTGVESSIAAAIWAVKFGGK 278
Query: 205 KVVISAPSADA--PMFVVGVNEKTYK 228
VI + P V E +
Sbjct: 279 VFVIGVGKNEIQIPFMRASVREVDLQ 304
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 31.8 bits (73), Expect = 0.33
Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 41/141 (29%)
Query: 178 GVDYVVES--SGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVN------- 223
VD V + S + A K G ++ S SA D P+ + VN
Sbjct: 83 DVDIVFSALPSDLAKKFEPEFA--KEGK--LIFSNASAYRMEEDVPLVIPEVNADHLELI 138
Query: 224 ---EKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATT------ATQKT 274
+ + I++N +C+T C K + ++FG+ V T A
Sbjct: 139 EIQREKRGWDGAIITNPNCSTICAVITLKPIMDKFGL-----EAVFIATMQAVSGAGYNG 193
Query: 275 VDGPSMKDWRGGRGASQNIIP 295
V ++ D N+IP
Sbjct: 194 VPSMAILD---------NLIP 205
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase;
HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB:
2ixb_A*
Length = 444
Score = 32.0 bits (72), Expect = 0.37
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122
++ G G+ + A RDDV++VA DP
Sbjct: 22 RIAFIAVGLRGQTHVENMARRDDVEIVAFADP 53
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 31.4 bits (72), Expect = 0.49
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 91 KVGINGFGRIGRLVLRVA-AFRDDVDVVAVN 120
KV + G G IG V ++ A V +
Sbjct: 126 KVAVLGLGEIGTRVGKILAAL--GAQVRGFS 154
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 31.0 bits (71), Expect = 0.59
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 171 EIPWGDYGVDYVVESSGVFTTIAKA--SAHMKGGAKKVVISAPSADA----PMFVVGVNE 224
EI G GV++ +ES+G + + + + G V+ AP + + +
Sbjct: 253 EITDG--GVNFALESTGSPEILKQGVDALGILGKI--AVVGAPQLGTTAQFDVNDLLLGG 308
Query: 225 KTYK 228
KT
Sbjct: 309 KTIL 312
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 31.1 bits (71), Expect = 0.60
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 93 GINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDA 126
GI G+G+IG+LV AF ++V+
Sbjct: 164 GIFGYGKIGQLVAGYGRAF--GMNVLV-WGRENSK 195
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 31.0 bits (69), Expect = 0.63
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMF 133
++ I+GF ++ + D+ ND + A +
Sbjct: 225 DRIVISGFSLGTEPMMVLGVLDKDIYAFVYNDFLCQTQERAVVM 268
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 31.0 bits (71), Expect = 0.68
Identities = 8/54 (14%), Positives = 18/54 (33%)
Query: 175 GDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYK 228
++E++GV T+ A A+ ++ D + + K
Sbjct: 226 ELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRK 279
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 30.7 bits (70), Expect = 0.68
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 91 KVGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFK 143
++ I G G+IG+ + A A + V+ VN A + + +T
Sbjct: 139 QLLIYGTGQIGQSLAAKASAL--GMHVIGVNTTGHPADHFHETVAFTATADALA 190
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 30.8 bits (70), Expect = 0.76
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDA 126
V G GR ++ + + +V D
Sbjct: 7 GVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDK 42
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH,
oxidoreductase; 1.80A {Staphylococcus aureus}
Length = 243
Score = 30.3 bits (69), Expect = 0.79
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122
K+ + G+G + + V R+A ++V V +
Sbjct: 4 MKILLIGYGAMNQRVARLAE-EKGHEIVGVIEN 35
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 30.1 bits (68), Expect = 0.80
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 86 SDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV-NDP 122
+ G+ +V I G GRIG R + +
Sbjct: 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 30.4 bits (69), Expect = 0.97
Identities = 18/177 (10%), Positives = 43/177 (24%), Gaps = 29/177 (16%)
Query: 61 TCAAKGIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFR--DDVDVVA 118
K I+ I +P + KV + G G IG L + +
Sbjct: 153 ADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANR 212
Query: 119 VNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYG 178
++ + N + S ++
Sbjct: 213 REPTEVEQTVIEET------------KTNYYNSSNGY--------------DKLKDSVGK 246
Query: 179 VDYVVESSGVFTTIAKAS-AHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIV 234
D +++++G I + + ++ + ++ N I+
Sbjct: 247 FDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTII 303
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 30.0 bits (68), Expect = 1.2
Identities = 3/36 (8%), Positives = 8/36 (22%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDA 126
+ G + ++ V + D
Sbjct: 6 RFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDN 41
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 1.3
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 257 ILEGLMT---TVHATTA--TQKTVD-GPSMKDWRGGRGASQNIIPSSTGAAKGASYEDVK 310
+L+GL+ V TT+ +++ D S+ G +G++ ++P S +DV+
Sbjct: 493 VLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVP-----FNQGSKQDVE 547
Query: 311 AAIKYASEGSLKGILGYTDEDVV 333
A I++ + G LG+ D D +
Sbjct: 548 ALIEFIYDTEKNGGLGW-DLDAI 569
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 29.9 bits (68), Expect = 1.4
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 145 TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204
T+N + S E ++ +I G G D+++E++G + + S ++ G
Sbjct: 244 TLNRRETSVEERRKAIM---------DITHG-RGADFILEATGDSRALLEGSELLRRGGF 293
Query: 205 KVVISAPSADAPM 217
V P+
Sbjct: 294 YSVAGVAVPQDPV 306
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 30.0 bits (68), Expect = 1.4
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDA 126
++ I G+G +G + +A+ D+++V V D +
Sbjct: 7 QLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEK 42
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 1.5
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 13/78 (16%)
Query: 7 LRSTAS---ASLVRADLTSSPSDRVKGSPTAAFSRNLNTSSI--FGTSVPSGSSSSSLQT 61
LR + +V + P T + I FG SG + +
Sbjct: 468 LRVLSGSISERIVDC-IIRLPVKW----ETTT---QFKATHILDFGPGGASGLGVLTHRN 519
Query: 62 CAAKGIQPIRATATEIPP 79
G++ I A +I P
Sbjct: 520 KDGTGVRVIVAGTLDINP 537
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich,
structural genomics, PSI-2, prote structure initiative;
1.74A {Klebsiella pneumoniae subsp}
Length = 241
Score = 29.6 bits (67), Expect = 1.6
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 83 KSRSDGNTKVGINGF--GRIGRLVLRVAAFRDDVDVVA 118
++ I GF G GR+ AA +
Sbjct: 108 ARHGGDAHRLLITGFCWG--GRITWLYAAHNPQLKAAV 143
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 29.9 bits (68), Expect = 1.6
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 3/30 (10%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVN 120
VG G G IG + + +
Sbjct: 148 VGFLGMGAIGLAMADRLQGW--GATLQYHE 175
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change,
half-OF-sites-reactivity, protein evolution, sequence
homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A*
2r00_C*
Length = 336
Score = 29.8 bits (68), Expect = 1.6
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 24/118 (20%)
Query: 152 STLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211
T NGK ++V ++ E W V + S+G + A + G VVI
Sbjct: 44 KTYRFNGKTVRV---QNVEEFDWS--QVHIALFSAGGELSAKWAPIAAEAGV--VVIDNT 96
Query: 212 SA-----DAPMFVVGVNE---KTYKPNMNIVSNASCTT----NCLAPLAKVVHEEFGI 257
S D P+ V VN ++ NI++N +C+T L P+ ++ GI
Sbjct: 97 SHFRYDYDIPLVVPEVNPEAIAEFRNR-NIIANPNCSTIQMLVALKPI----YDAVGI 149
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 29.5 bits (67), Expect = 1.7
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 175 GDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAP 216
GVD +E SG + + + + ++
Sbjct: 233 DGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVT 274
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 29.6 bits (67), Expect = 1.8
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 91 KVGINGFGRIGRL-VLRVAAFRDDVDVVAVNDPFID 125
K+G GFG+ L R+ ++V + D ++
Sbjct: 4 KMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVN 39
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D
structure, serine esterase, HYD aromatic hydrocarbons,
catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A*
1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A
1ggv_A*
Length = 236
Score = 29.2 bits (66), Expect = 1.9
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 83 KSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVA 118
+ + N KVG+ G+ G L VA+ + VD
Sbjct: 108 RHQPYSNGKVGLVGYSLGGALAFLVAS-KGYVDRAV 142
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 29.3 bits (66), Expect = 2.0
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 91 KVGINGFGRIGRLV-LRVAAFRDDVDVVAV 119
K+ + G G I + L V A D+++V
Sbjct: 4 KIAMIGLGDIAQKAYLPVLAQWPDIELVLC 33
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 29.5 bits (67), Expect = 2.0
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 91 KVGINGFGRIGRLV-LRVAAF 110
++G+ G G+IGR + R AF
Sbjct: 173 RIGVLGLGQIGRALASRAEAF 193
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB:
3upy_A*
Length = 446
Score = 29.4 bits (65), Expect = 2.1
Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
++G+ G G +G ++ A ++V A++ + + A + +G +
Sbjct: 25 RIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKA----IRTAYGDEENAREATT 80
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGV----FTTIAKASAHMKGGAKKV 206
+S + + K+ D I + +D +++++G+ T A + K +
Sbjct: 81 ESAMTRAIEAGKIAVTDDNDLI-LSNPLIDVIIDATGIPEVGAETGIAAIRNG----KHL 135
Query: 207 VISAPSADA 215
V+ AD
Sbjct: 136 VMMNVEADV 144
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 29.2 bits (66), Expect = 2.2
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 30/114 (26%)
Query: 178 GVDYVVES--SGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVN------- 223
D V + V I K+ + G V+S D P+ V VN
Sbjct: 93 ECDVVFSGLDADVAGDIEKSFV--EAGL--AVVSNAKNYRREKDVPLVVPIVNPEHIDVV 148
Query: 224 --------EKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATT 269
K K I+ ++C+T L K + E+FG ++ + TT
Sbjct: 149 ENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLKPLVEKFGPID----ALTTTT 198
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 29.2 bits (65), Expect = 2.2
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 91 KVGINGFGRIGRLVLRVA-AFRDDVDVVAVN 120
V + G GR+G V R A V V A
Sbjct: 157 NVAVLGLGRVGMSVARKFAALGAKVKVGARE 187
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 29.1 bits (66), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 91 KVGINGFGRIGRLV-LRVAAF 110
+VGI G GRIG V R AF
Sbjct: 166 RVGIIGLGRIGLAVAERAEAF 186
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 29.2 bits (66), Expect = 2.3
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 149 VDDSTLEINGKL--IKVFSKRDP-AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKK 205
D T++I +L V S++ P ++P +D++ E++G ++ +
Sbjct: 210 RPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVG 269
Query: 206 VVISAPS-------ADAPMFVVGVNEKTYK 228
++ PS A A + ++ K
Sbjct: 270 ALLGVPSDWAFEVDAGAFHREMVLHNKALV 299
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 29.1 bits (66), Expect = 2.3
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 91 KVGINGFGRIGRLVLRVA-AFRDDVDVVAVN 120
+GI G GRIG+ + + A F ++ ++ +
Sbjct: 152 TIGIIGLGRIGQAIAKRAKGF--NMRILYYS 180
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 29.1 bits (66), Expect = 2.8
Identities = 26/140 (18%), Positives = 43/140 (30%), Gaps = 21/140 (15%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
KV + G G IG + L VA VV D A + + + +
Sbjct: 174 KVLVCGAGPIGMVTLLVAKAMGAAQVVVT-DLSATRLSKAK--EIGADL-----VLQISK 225
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
+S EI K+ + +E +G +I + G V++
Sbjct: 226 ESPQEIARKVEGQL-----------GCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGL 274
Query: 211 PSADA--PMFVVGVNEKTYK 228
S P+ + E K
Sbjct: 275 GSEMTTVPLLHAAIREVDIK 294
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 28.8 bits (64), Expect = 3.1
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 178 GVDYVVESSGVFTTIAKASAHMKGGAKKVVIS-APSADAPMFVVGVN--EKTYKPNMNIV 234
+D+V +++ + + + +I P+A P V VN E K N+N+V
Sbjct: 71 DIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLGKLNVNMV 130
Query: 235 SNASCTT----NCLAPLAKVVHEE 254
+ T ++ +AKV + E
Sbjct: 131 TCGGQATIPMVAAVSRVAKVHYAE 154
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 28.7 bits (65), Expect = 3.2
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 170 AEIPWGDYGVDYVVESSGVFTTIAKA--SAHMKGGAKKVVISAPSADAPMFVVG-VNEKT 226
E+ G GVDY ++ +G T+ A G V+ A + + V + ++
Sbjct: 259 TELTAG--GVDYSLDCAGTAQTLKAAVDCTV-LGWGSCTVVGAKVDEMTIPTVDVILGRS 315
Query: 227 YK 228
Sbjct: 316 IN 317
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis,
NADH binding specificity, TB structural genomics
consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A
1yl7_A* 1yl6_A*
Length = 245
Score = 28.3 bits (64), Expect = 3.4
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 91 KVGINGF-GRIGRLVLRVAAFRDDVDVVAVNDP 122
+VG+ G G++G ++R A DD+ + A D
Sbjct: 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA 34
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 28.4 bits (64), Expect = 3.5
Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFID 125
K+ + G R L ++ + + +
Sbjct: 4 KICVIGSSGHFRYALE--GLDEECSITGIAPGVPE 36
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 28.7 bits (65), Expect = 3.7
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 170 AEIPWGDYGVDYVVESSGVFTTIAKA--SAHMKGGAKKVVISAPSADAPMFVVG---VNE 224
E+ G GVDY E G + A + H KG VV+ ++ + V
Sbjct: 254 IEMTDG--GVDYSFECIGNVKVMRAALEACH-KGWGVSVVVGVAASGEEIATRPFQLVTG 310
Query: 225 KTYK 228
+T+K
Sbjct: 311 RTWK 314
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 28.7 bits (65), Expect = 3.9
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 170 AEIPWGDYGVDYVVESSGVFTTIAKA--SAHMKGGAKKVVISAPSADA-----PMFVVGV 222
E+ G GVD+ E G T+ A + V++ P PM + +
Sbjct: 255 TEMSNG--GVDFSFEVIGRLDTMVTALSCCQ-EAYGVSVIVGVPPDSQNLSMNPMLL--L 309
Query: 223 NEKTYK 228
+ +T+K
Sbjct: 310 SGRTWK 315
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 28.4 bits (64), Expect = 4.0
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 170 AEIPWGDYGVDYVVESSGVFTTIAKA--SAHMKGGAKKVVISAPSADA----PMFVVGVN 223
+++ G GVD+ +E G + A S KG V++ P+ + +
Sbjct: 256 SKMTNG--GVDFSLECVGNVGVMRNALESCL-KGWGVSVLVGWTDLHDVATRPIQL--IA 310
Query: 224 EKTYK 228
+T+K
Sbjct: 311 GRTWK 315
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 27.5 bits (61), Expect = 4.1
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119
+ + G G+IG+++ + + V
Sbjct: 7 NICVVGAGKIGQMIAALLKTSSNYSVTVA 35
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 28.4 bits (64), Expect = 4.2
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 73 TATEIPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDA 126
++ + + +D K+ + G G +G+ + + A R V+VVAV D + +A
Sbjct: 3 VMIKLRDELGTATTDSAQKILLLGSGELGKEIA-IEAQRLGVEVVAV-DRYANA 54
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 28.3 bits (63), Expect = 4.4
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFI-DAKYMAYMFKYDSTHGVFKGTINV 148
+VG+ G + G L L AA V V PF+ D K + + + + +
Sbjct: 200 DRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRL 259
Query: 149 VDDSTLEINGKLIKVFSKRDPA 170
D E ++ D
Sbjct: 260 FDPRH-ERENEVFTKLGYIDVK 280
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 28.3 bits (64), Expect = 4.5
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 92 VGINGFGRIGRLVLRVA-AF 110
VGI G GRIG+ + R F
Sbjct: 158 VGIIGLGRIGQAIARRLKPF 177
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 28.3 bits (63), Expect = 4.7
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFI 124
++ I G + G + L V+A + + PF+
Sbjct: 192 ERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFL 226
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding,
oxidoreductase-oxidoreductase I complex; HET: 25A L14;
1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A*
2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A*
3q1l_A
Length = 366
Score = 28.3 bits (64), Expect = 5.1
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 178 GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVNEKTYKPNMN 232
GVD + S+G T+ A +K G VV+ S D P+ V VN +
Sbjct: 64 GVDIALFSAGSSTSAKYAPYAVKAGV--VVVDNTSYFRQNPDVPLVVPEVNAHALDAHNG 121
Query: 233 IVSNASCTTNCLAPLAKVVHEEFGI 257
I++ +C+T + + V +++G+
Sbjct: 122 IIACPNCSTIQMMVALEPVRQKWGL 146
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 27.9 bits (63), Expect = 5.2
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 165 SKRDPAEIP--WGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAP 216
+ D E+ GV+ ++E SG I + + G + ++ PS
Sbjct: 216 LEEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIR 269
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 28.1 bits (62), Expect = 5.2
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121
V I G G IG+ ++ + + + + D
Sbjct: 14 TVLIIGMGNIGKKLVELG----NFEKIYAYD 40
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1}
PDB: 3jsa_A*
Length = 331
Score = 28.0 bits (63), Expect = 5.2
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 25/129 (19%)
Query: 91 KVGINGFGRIGRLVLRV-------AAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFK 143
+ I G G +G +LR+ +VV V DS H +
Sbjct: 8 NLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFV---------------ADSLHSYYN 52
Query: 144 GTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKG-- 201
I++ + + G L + + A D VV+++ K A K
Sbjct: 53 ERIDIGKVISYKEKGSLDSLEYESISASE-ALARDFDIVVDATPASADGKKELAFYKETF 111
Query: 202 GAKKVVISA 210
K V++A
Sbjct: 112 ENGKDVVTA 120
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 27.9 bits (63), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVN 120
+G+ G GRIG+ V + A AF + VV
Sbjct: 147 LGLVGMGRIGQAVAKRALAF--GMRVVYHA 174
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox
sensing, winged helix, themophilus; HET: NAD; 2.16A
{Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB:
1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Length = 211
Score = 27.5 bits (61), Expect = 5.7
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 87 DGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121
+ + I G GR+G + F + ++ D
Sbjct: 78 NRKWGLCIVGMGRLGSALADYPGFGESFELRGFFD 112
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 28.0 bits (63), Expect = 5.7
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
D TL ++ + S + GD + ++ SG I + G +++
Sbjct: 214 DVTLVVDPAKEEESSIIERIRSAIGD-LPNVTIDCSGNEKCITIGINITRTGGTLMLVGM 272
Query: 211 PSADA--PMFVVGVNEKTYK 228
S P+ E K
Sbjct: 273 GSQMVTVPLVNACAREIDIK 292
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 28.0 bits (63), Expect = 5.9
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDA 126
VG+ G GRIGR+ ++ V+ D F
Sbjct: 149 VGVVGLGRIGRVAAQIFHGM--GATVIG-EDVFEIK 181
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 28.0 bits (63), Expect = 6.4
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 170 AEIPWGDYGVDYVVESSGVFTTIAKA--SAHMKGGAKKVVISAPSADAPMFVVG---VNE 224
E G GVDY VE +G T+ A S + G VV+ S + + + +
Sbjct: 255 CEKTNG--GVDYAVECAGRIETMMNALQSTY-CGSGVTVVLGLASPNERLPLDPLLLLTG 311
Query: 225 KTYK 228
++ K
Sbjct: 312 RSLK 315
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 27.6 bits (62), Expect = 7.4
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 91 KVGINGFGRIGRLVLRVA-AF 110
++GI G GRIGR + A F
Sbjct: 175 RLGIFGMGRIGRAIATRARGF 195
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 27.6 bits (62), Expect = 7.6
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 92 VGINGFGRIGRLVLRVAAF 110
+G G G I + + R A
Sbjct: 166 LGAVGLGAIQKEIARKAVH 184
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 27.5 bits (62), Expect = 7.7
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 92 VGINGFGRIGRLVLRVA-AF 110
+GI GFG IG+ + + A F
Sbjct: 149 LGIYGFGSIGQALAKRAQGF 168
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 27.1 bits (60), Expect = 8.6
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 98 GRIGRLVLRVAAFRDDVDVVAV 119
G+I R V+ A + +
Sbjct: 33 GQIARHVINQLADKQTIKQTLF 54
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 27.2 bits (61), Expect = 8.8
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 92 VGINGFGRIGRLVLRVA-AFRDDVDVVAVNDPFIDA 126
VG+ G G IG++ +++ F V+A DP+
Sbjct: 148 VGVMGTGHIGQVAIKLFKGFG--AKVIA-YDPYPMK 180
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 27.3 bits (61), Expect = 8.9
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 91 KVGINGFGRIGRL-VLRVAAFRDDVDVVAVNDPFIDA 126
+ + G GRI + D +++ V D A
Sbjct: 15 RFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAA 51
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 27.3 bits (60), Expect = 9.3
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFID 125
+G+ G G L+ AA + F D
Sbjct: 223 DAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSD 258
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.368
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,778,089
Number of extensions: 356595
Number of successful extensions: 846
Number of sequences better than 10.0: 1
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 172
Length of query: 389
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 294
Effective length of database: 4,049,298
Effective search space: 1190493612
Effective search space used: 1190493612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.0 bits)