Citrus Sinensis ID: 016452

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
cccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccEEEEEEEEEEccccEEEEEEccccccccccEEEEEEEccccccEEEEEEccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEccccEEccccccEEEEcccccccccccccEEEEEEEEEcccEEEEEccccccHHHHHHHHHHccccccccc
ccHHHHHHHHcccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHcccEEEcEEEccccccccEEEEEEEEccccccEEEEccccccccccccEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEccccccccccccccccccEEccccccccccccccEEEEEEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEEcccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
MTIKSIIHDMMwrrshrvvgdaadhdmaggssptccwanlPQELLREILAKIEAadsawpsrRSVVACAGVCRSWRQITKEIVkvpelsgyltfpisvkqpgprdyLLQCFIkrnrstqtYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLhsddmskgsstylgklrsnflgtkfivydgqpphagakmtrsrSTRLanlkqvspripfgnysVAHISYELNvlgsrgprrmqcvmdsipasaiesggvaptqteflfsnadsfpsipffrsksnrsekflsgplacqkdgalvlrnkaprWHEQLQCWCLNFHGRVTVASVKNfqlvaspengpagleHEKIILQFGkvgkdlftmdyrypISAFQAFAICLSSfdtkiace
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEaadsawpsrrSVVACAGVCRSWRQITKEivkvpelsgyltfpisvkqpgpRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIislhsddmskgSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTrlanlkqvspripfgnySVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
*****IIHDMMWRRSHRVVGDAAD**MAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDM***SSTYLGKLRSNFLGTKFIVYDG**********************VSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPA*AI****VAPTQTEFLFSNADSFPSIPFF*********FLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKI***
**IKS*****************************************************************************************PISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHA**************************Y*VAHISYELNVLGSRGPRRMQCVM**************************************************CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP***PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPH*********STRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
********************************PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHA***********LANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIES******************************************KDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIAC*
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MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query389 2.2.26 [Sep-21-2011]
Q10LG8403 Tubby-like F-box protein yes no 0.997 0.962 0.683 1e-160
Q8VY21406 Tubby-like F-box protein yes no 0.992 0.950 0.689 1e-156
Q8H485406 Tubby-like F-box protein yes no 0.907 0.869 0.697 1e-150
Q9SQU1380 Tubby-like F-box protein no no 0.958 0.981 0.636 1e-133
Q6NPQ1389 Tubby-like F-box protein no no 0.966 0.966 0.614 1e-130
Q75HX5445 Tubby-like F-box protein no no 0.958 0.838 0.553 1e-124
Q2QXB2445 Tubby-like F-box protein no no 1.0 0.874 0.514 1e-123
Q6Z2G9428 Tubby-like F-box protein no no 0.902 0.820 0.595 1e-122
Q7XSV4462 Tubby-like F-box protein no no 0.969 0.816 0.512 1e-118
Q8LJA9448 Tubby-like F-box protein no no 0.994 0.863 0.511 1e-118
>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1 Back     alignment and function desciption
 Score =  564 bits (1454), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 276/404 (68%), Positives = 317/404 (78%), Gaps = 16/404 (3%)

Query: 1   MTIKSIIHDM-----------MWRRSHRVVGDA----ADHDMAGGSSPTCCWANLPQELL 45
           M+ +S+I +M           +  RSHR  G A    A       +    CWA LP ELL
Sbjct: 1   MSFRSLIQEMRDEFGSISRHSLRSRSHRGGGGAPRVAAVGPAEAAAMQQSCWAQLPPELL 60

Query: 46  REILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRD 105
           RE+L +IE ++  WPSRR VVACAGVCRSWR ITKEIV+VPE SG LTFPIS+KQPGPRD
Sbjct: 61  REVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQPGPRD 120

Query: 106 YLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGS 165
             L+CFI+RNR+TQTY+LY+ LT ALADDGKFLLAARKCR+ TCTDY+ISL   DMSKGS
Sbjct: 121 GTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGS 180

Query: 166 STYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISY 225
           +TY+GKLRSNFLGTKF VYD  PP+ GA +++SRS R+  L QVSPR+P GNY V+HISY
Sbjct: 181 NTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSARVVGLNQVSPRVPAGNYPVSHISY 240

Query: 226 ELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEK 285
           ELNVLG+RGPRRM C+MDSIP SA++ GG APTQTEF  S  DSFPSI FFRSKS R + 
Sbjct: 241 ELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSGLDSFPSISFFRSKSARIDS 300

Query: 286 FLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLE 345
             S  L+ QK+  LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVAS ENGP   E
Sbjct: 301 ATS-QLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDENGPTNQE 359

Query: 346 HEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 389
            +K+ILQFGK+GKDLFTMDYRYPISAFQ+FAICLSSFDTKIACE
Sbjct: 360 QDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 403

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1 Back     alignment and function description
>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQU1|TLP9_ARATH Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1 Back     alignment and function description
>sp|Q6NPQ1|TLP11_ARATH Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1 Back     alignment and function description
>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1 Back     alignment and function description
>sp|Q7XSV4|TLP7_ORYSJ Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1 Back     alignment and function description
>sp|Q8LJA9|TLP3_ORYSJ Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
255551637390 phosphoric diester hydrolase, putative [ 0.989 0.987 0.794 0.0
302399101392 TLP domain class transcription factor [M 1.0 0.992 0.772 1e-179
356555565385 PREDICTED: tubby-like F-box protein 6-li 0.974 0.984 0.788 1e-179
118486104392 unknown [Populus trichocarpa] 0.987 0.979 0.783 1e-179
224107205395 f-box family protein [Populus trichocarp 0.987 0.972 0.779 1e-178
356549056389 PREDICTED: tubby-like F-box protein 6-li 0.974 0.974 0.775 1e-177
357447461393 Tubby-like F-box protein [Medicago trunc 0.994 0.984 0.766 1e-176
225436797405 PREDICTED: tubby-like F-box protein 3-li 0.992 0.953 0.730 1e-174
449518857386 PREDICTED: LOW QUALITY PROTEIN: tubby-li 0.979 0.987 0.751 1e-174
225432392374 PREDICTED: tubby-like F-box protein 6-li 0.910 0.946 0.813 1e-174
>gi|255551637|ref|XP_002516864.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223543952|gb|EEF45478.1| phosphoric diester hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/389 (79%), Positives = 339/389 (87%), Gaps = 4/389 (1%)

Query: 5   SIIHDMMWR-RSHRVVGDAADHDMAGGS---SPTCCWANLPQELLREILAKIEAADSAWP 60
           S I  M+ R RSHRVV D      A  S       CWAN+PQELLRE+L +IEA++S+WP
Sbjct: 2   SSIRSMIIRSRSHRVVQDGLAPPHAVESRLGEDISCWANMPQELLREVLMRIEASESSWP 61

Query: 61  SRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQT 120
            R+SVVACAGVCR+WR +TKE+VKVPE+SG LTFPISVKQPGPRD+LLQCFIKR RSTQT
Sbjct: 62  PRKSVVACAGVCRTWRHMTKELVKVPEISGKLTFPISVKQPGPRDFLLQCFIKRCRSTQT 121

Query: 121 YHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTK 180
           Y+LYLSLTNAL DDGK LLAARKCRR TCTDYIISL +DDMSKGSSTY+GKLRSNFLGTK
Sbjct: 122 YYLYLSLTNALTDDGKLLLAARKCRRTTCTDYIISLDADDMSKGSSTYVGKLRSNFLGTK 181

Query: 181 FIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQC 240
           F V+DGQPPHAGAKM +SRSTRL NLKQVSPR+P GNY +AH+SYELNVLGSRGPRRMQC
Sbjct: 182 FTVFDGQPPHAGAKMMKSRSTRLVNLKQVSPRVPAGNYPIAHMSYELNVLGSRGPRRMQC 241

Query: 241 VMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALV 300
           VMD+IPA++I  GG APTQTEF   + D  PS+PFFRSKSN  E FLSGPL+ QKDGAL+
Sbjct: 242 VMDAIPATSIGPGGTAPTQTEFAHHSVDILPSLPFFRSKSNCVENFLSGPLSSQKDGALI 301

Query: 301 LRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDL 360
           L+NK+PRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGP G EHEKIILQFGKVGKDL
Sbjct: 302 LKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPPGPEHEKIILQFGKVGKDL 361

Query: 361 FTMDYRYPISAFQAFAICLSSFDTKIACE 389
           FTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 362 FTMDYRYPISAFQAFAICLSSFDTKIACE 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302399101|gb|ADL36845.1| TLP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|356555565|ref|XP_003546101.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|118486104|gb|ABK94895.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224107205|ref|XP_002314408.1| f-box family protein [Populus trichocarpa] gi|222863448|gb|EEF00579.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549056|ref|XP_003542914.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|357447461|ref|XP_003594006.1| Tubby-like F-box protein [Medicago truncatula] gi|355483054|gb|AES64257.1| Tubby-like F-box protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225436797|ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449518857|ref|XP_004166452.1| PREDICTED: LOW QUALITY PROTEIN: tubby-like F-box protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225432392|ref|XP_002276906.1| PREDICTED: tubby-like F-box protein 6-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
TAIR|locus:2081101380 TLP9 "AT3G06380" [Arabidopsis 0.958 0.981 0.638 4.9e-124
TAIR|locus:2180034389 TLP11 "AT5G18680" [Arabidopsis 0.969 0.969 0.618 8.5e-120
TAIR|locus:2025327455 TLP1 "AT1G76900" [Arabidopsis 0.606 0.518 0.563 2.8e-111
TAIR|locus:2032950445 TLP10 "AT1G25280" [Arabidopsis 0.655 0.573 0.539 1.7e-109
TAIR|locus:2194686429 TLP5 "AT1G43640" [Arabidopsis 0.766 0.694 0.555 1.9e-108
TAIR|locus:2062121394 TLP2 "AT2G18280" [Arabidopsis 0.940 0.928 0.540 1.8e-103
TAIR|locus:2036730413 TLP6 "AT1G47270" [Arabidopsis 0.866 0.815 0.562 3e-101
TAIR|locus:2009610379 TLP7 "AT1G53320" [Arabidopsis 0.591 0.606 0.493 4.2e-96
MGI|MGI:2651573505 Tub "tubby candidate gene" [Mu 0.223 0.172 0.542 4.7e-39
RGD|3918505 Tub "tubby homolog (mouse)" [R 0.223 0.172 0.542 4.7e-39
TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
 Identities = 253/396 (63%), Positives = 296/396 (74%)

Query:     1 MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-W 59
             MT +S++ +M   R HRVV  AA    A  S P   W+ LP+ELLREIL ++E  D   W
Sbjct:     1 MTFRSLLQEMR-SRPHRVVHAAAS--TANSSDPFS-WSELPEELLREILIRVETVDGGDW 56

Query:    60 PSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQ 119
             PSRR+VVACAGVCRSWR +TKEIV VPE S  LTFPIS+KQ GPRD L+QCFIKRNR+TQ
Sbjct:    57 PSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSLVQCFIKRNRNTQ 116

Query:   120 TYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGT 179
             +YHLYL LT +L D+GKFLLAA K +RATCTDYIISL SDD+SK S+ YLG++RSNFLGT
Sbjct:   117 SYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGT 176

Query:   180 KFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQ 239
             KF V+DG    A AKM +SRS+   N  +VSPR+P G+Y +AHISYELNVLGSRGPRRM+
Sbjct:   177 KFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQGSYPIAHISYELNVLGSRGPRRMR 232

Query:   240 CVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDG-- 297
             C+MD+IP S +ES GV  + +   FS+  S    P FRS    S+   S   +C   G  
Sbjct:   233 CIMDTIPMSIVESRGVVASTSISSFSSRSS----PVFRS---HSKPLRSNSASCSDSGNN 285

Query:   298 ----ALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQF 353
                  LVL NKAPRWHEQL+CWCLNFHGRVTVASVKNFQLVA  +   AG   E+IILQF
Sbjct:   286 LGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVKNFQLVAVSDC-EAGQTSERIILQF 344

Query:   354 GKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 389
             GKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct:   345 GKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 380
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0009620 "response to fungus" evidence=IMP
TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2651573 Tub "tubby candidate gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3918 Tub "tubby homolog (mouse)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H485TLP11_ORYSJNo assigned EC number0.69770.90740.8694yesno
Q8VY21TLP3_ARATHNo assigned EC number0.68940.99220.9507yesno
Q10LG8TLP6_ORYSJNo assigned EC number0.68310.99740.9627yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
pfam01167243 pfam01167, Tub, Tub family 1e-122
pfam1293747 pfam12937, F-box-like, F-box-like 3e-04
pfam0064648 pfam00646, F-box, F-box domain 0.001
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 0.004
>gnl|CDD|216339 pfam01167, Tub, Tub family Back     alignment and domain information 
 Score =  353 bits (907), Expect = e-122
 Identities = 127/286 (44%), Positives = 165/286 (57%), Gaps = 46/286 (16%)

Query: 101 PGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDG--KFLLAARKCRRATCTDYIISLH 157
           P PR   +QC I R++S   Y L+ +    L  ++G  KFLLAARK +R+  ++Y+ISL 
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 158 SDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGN 217
             D+S+    Y+GKLRSNFLGTKF V+D       A++             V+P++  G 
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARL-------------VTPKVASGR 107

Query: 218 YSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFR 277
             +A + YE NVLG RGPR+M  +M  IP+S        P Q                  
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIPSSHE----RVPIQPL---------------- 147

Query: 278 SKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP 337
              N  E  LS      K+  LVL NKAPRW++QLQ + LNFHGRVT ASVKNFQ+V + 
Sbjct: 148 ---NDQESLLSRWQNKNKESLLVLHNKAPRWNDQLQSYVLNFHGRVTQASVKNFQIVHAS 204

Query: 338 ENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 383
                  + + I+LQFG+V KD+FTMDYRYP+SAFQAFAICLSSFD
Sbjct: 205 -------DPDYIVLQFGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 389
KOG2502355 consensus Tub family proteins [General function pr 100.0
PF01167246 Tub: Tub family; InterPro: IPR000007 Tubby, an aut 100.0
KOG2503565 consensus Tubby superfamily protein TULP4 [General 99.77
PF12043346 DUF3527: Domain of unknown function (DUF3527); Int 98.33
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.79
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.51
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 97.38
smart0025641 FBOX A Receptor for Ubiquitination Targets. 97.25
KOG2997366 consensus F-box protein FBX9 [General function pre 89.48
>KOG2502 consensus Tub family proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-127  Score=937.33  Aligned_cols=311  Identities=59%  Similarity=0.984  Sum_probs=287.6

Q ss_pred             CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHhhhcCcccccccccccccccCCCCCceEEEEEEE
Q 016452           35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKR  114 (389)
Q Consensus        35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~iv~~p~~~g~~tFp~sLkqPgPr~~~iQC~I~R  114 (389)
                      +.|++||||||+|+|+|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||++|+||||+|.++||+|+|
T Consensus        43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R  122 (355)
T KOG2502|consen   43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR  122 (355)
T ss_pred             chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCceEEEEeecccccc--CCCeEEEEEEecccCCcceEEEEecCCCCCCCCCceeeeeeccceecEEEEecCCCCCCC
Q 016452          115 NRSTQTYHLYLSLTNALA--DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAG  192 (389)
Q Consensus       115 ~k~~~tY~LyL~l~~~~~--e~gkfLLaArK~rr~~tsnYiISld~~dlSr~s~~yvGKLRSNflGTkF~iYD~g~p~~~  192 (389)
                      ||+|++|+||++|++++.  |++||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|..   
T Consensus       123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~---  199 (355)
T KOG2502|consen  123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVN---  199 (355)
T ss_pred             ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCC---
Confidence            999999999999999763  789999999999999999999999999999999999999999999999999999732   


Q ss_pred             CccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCcccccCCCCCCccceecccCCCCCCC
Q 016452          193 AKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPS  272 (389)
Q Consensus       193 a~~~~~rs~~~~~~k~vsp~~p~g~~ela~V~Ye~NVLg~rGPRrM~~~m~~Ip~s~i~~gg~~P~~~~~~~~~~~~~~~  272 (389)
                             .+|.++      ++|+++++||+|+||+||||+||||||+|+||.||.++  +||++|.|+...+..      
T Consensus       200 -------~~r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~------  258 (355)
T KOG2502|consen  200 -------PSRRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS------  258 (355)
T ss_pred             -------cccccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc------
Confidence                   122333      68899999999999999999999999999999999987  899998887654311      


Q ss_pred             ccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEEEeCCCCCCCCCCCCeEEEE
Q 016452          273 IPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ  352 (389)
Q Consensus       273 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQ  352 (389)
                                   .+...++..++++++|+||+|+|||++||||||||||||+||||||||||..       ++++||||
T Consensus       259 -------------~l~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQ  318 (355)
T KOG2502|consen  259 -------------LLFRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQ  318 (355)
T ss_pred             -------------hhhhccccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEeccC-------CCCEEEEE
Confidence                         1222333347899999999999999999999999999999999999999974       56999999


Q ss_pred             eeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016452          353 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  389 (389)
Q Consensus       353 FGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACE  389 (389)
                      |||||||+|||||+||||+||||||||||||+|||||
T Consensus       319 FGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  319 FGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE  355 (355)
T ss_pred             eeeeccceeeecccCccHHHHHHHHHHHhccccccCC
Confidence            9999999999999999999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function Back     alignment and domain information
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only] Back     alignment and domain information
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
1s31_A273 Crystal Structure Analysis Of The Human Tub Protein 1e-45
1c8z_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Leng 6e-45
1i7e_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Boun 2e-44
2fim_A276 Structure Of The C-Terminal Domain Of Human Tubby-L 1e-43
3c5n_A246 Structure Of Human Tulp1 In Complex With Ip3 Length 6e-41
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273 Back     alignment and structure 
Iteration: 1

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 160/301 (53%), Gaps = 62/301 (20%)
Query: 100 QPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGK--FLLAARKCRRATCTD 151
           +P P+   ++C I R++         TY L+L       +DGK  FLLA RK +++  ++
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 78
Query: 152 YIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVS 210
           Y+IS+   D+S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q  
Sbjct: 79  YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ-- 132
Query: 211 PRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNAD 268
                    +A + YE NVLG +GPR+M  +   +P   +  E   + P           
Sbjct: 133 --------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP----------- 170
Query: 269 SFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASV 328
                       N  E  L+       +  + L+NK P W++  Q + LNFHGRVT ASV
Sbjct: 171 -----------RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASV 219
Query: 329 KNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIAC 388
           KNFQ++        G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+AC
Sbjct: 220 KNFQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLAC 272
Query: 389 E 389
           E
Sbjct: 273 E 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265 Back     alignment and structure
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265 Back     alignment and structure
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276 Back     alignment and structure
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 5e-96
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 1e-93
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 2e-05
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 5e-04
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276 Back     alignment and structure
 Score =  287 bits (734), Expect = 5e-96
 Identities = 101/293 (34%), Positives = 146/293 (49%), Gaps = 46/293 (15%)

Query: 98  VKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGK-FLLAARKCRRATCTDYIISL 156
           V +P P+   ++C + R++      +Y S    L  + K FLLA RK +R+   +Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 157 HSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFG 216
              ++S+G   ++GKLRSN LG +F V+D                     +  S  +   
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASL 133

Query: 217 NYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFF 276
              +A + YE NVLG RGPRRM  ++  + A                    +  P  P  
Sbjct: 134 RQELAAVIYETNVLGFRGPRRMTVIIPGMSA------------------ENERVPIRP-- 173

Query: 277 RSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS 336
               N S+  L        +  + L NK P W++    + LNF GRVT ASVKNFQ+V +
Sbjct: 174 ---RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA 230

Query: 337 PENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 389
            +        + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD K+ACE
Sbjct: 231 DD-------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 100.0
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 100.0
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.13
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 96.92
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 96.79
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.62
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.88
3v7d_B 464 Cell division control protein 4; WD 40 domain, pho 94.38
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 92.51
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 92.18
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 91.03
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Back     alignment and structure
Probab=100.00  E-value=7.7e-91  Score=672.60  Aligned_cols=242  Identities=40%  Similarity=0.718  Sum_probs=186.4

Q ss_pred             cccCCCCCceEEEEEEEeecC------ceEEEEeeccccccCCCeEEEEEEecccCCcceEEEEecCCCCCCCCCceeee
Q 016452           98 VKQPGPRDYLLQCFIKRNRST------QTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGK  171 (389)
Q Consensus        98 LkqPgPr~~~iQC~I~R~k~~------~tY~LyL~l~~~~~e~gkfLLaArK~rr~~tsnYiISld~~dlSr~s~~yvGK  171 (389)
                      |+||+|+|+++||+|+|||+|      ++|||||+     .++++|||||||+|+++|+||+||+|++||||++++||||
T Consensus        29 l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGK  103 (276)
T 2fim_A           29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK  103 (276)
T ss_dssp             GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred             hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEE
Confidence            999999999999999999998      59999995     4788999999999999999999999999999999999999


Q ss_pred             eeccceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCccccc
Q 016452          172 LRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIE  251 (389)
Q Consensus       172 LRSNflGTkF~iYD~g~p~~~a~~~~~rs~~~~~~k~vsp~~p~g~~ela~V~Ye~NVLg~rGPRrM~~~m~~Ip~s~i~  251 (389)
                      |||||+||+|+|||+|.+++.               ..||+++.+++|||+|+||+||||++|||+|+|+||.+.    +
T Consensus       104 LrSNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~----~  164 (276)
T 2fim_A          104 LRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS----A  164 (276)
T ss_dssp             EEECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECBC----T
T ss_pred             EEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc----c
Confidence            999999999999999954321               135667788999999999999999999999999998542    2


Q ss_pred             CCCCCCccceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceecccccee
Q 016452          252 SGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNF  331 (389)
Q Consensus       252 ~gg~~P~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNF  331 (389)
                      +|+..|.+.    .               ...++++.++++...+++++|+||+|+|||++|||||||+||||+||||||
T Consensus       165 ~~~~~~~~p----~---------------~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNF  225 (276)
T 2fim_A          165 ENERVPIRP----R---------------NASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNF  225 (276)
T ss_dssp             TSCBCCCCC----S---------------STTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCE
T ss_pred             CCCEecccC----C---------------CcccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeeccccceE
Confidence            333333211    0               011112222233456789999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016452          332 QLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  389 (389)
Q Consensus       332 QLv~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACE  389 (389)
                      |||+++       ++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus       226 QLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          226 QIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             EEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             EEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            999874       678999999999999999999999999999999999999999998
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 389
d1c8za_265 d.23.1.1 (A:) Transcriptional factor tubby, C-term 1e-105
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-04
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  309 bits (794), Expect = e-105
 Identities = 98/310 (31%), Positives = 153/310 (49%), Gaps = 52/310 (16%)

Query: 83  VKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALA---DDGKFLL 139
           ++V +L  +        +P P+   ++C I R++      ++ +    L        FLL
Sbjct: 5   IEVQDLEEFAL------RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLL 58

Query: 140 AARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSR 199
           A RK +++  ++Y+IS+   D+S+G  +Y+GKLRSN +GTKF VYD       A      
Sbjct: 59  AGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKA------ 112

Query: 200 STRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQ 259
                     +         +A + YE NVLG +GPR+M  ++  +             +
Sbjct: 113 -------SSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNE 165

Query: 260 TEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNF 319
            E L +           R ++               +  + L+NK P W++  Q + LNF
Sbjct: 166 HETLLA-----------RWQNK------------NTESIIELQNKTPVWNDDTQSYVLNF 202

Query: 320 HGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICL 379
           HGRVT ASVKNFQ++          + + I++QFG+V +D+FTMDY YP+ A QAFAI L
Sbjct: 203 HGRVTQASVKNFQIIHGN-------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIAL 255

Query: 380 SSFDTKIACE 389
           SSFD+K+ACE
Sbjct: 256 SSFDSKLACE 265
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
d1c8za_265 Transcriptional factor tubby, C-terminal domain {M 100.0
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.04
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.82
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 96.69
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.65
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.7e-86  Score=631.79  Aligned_cols=246  Identities=41%  Similarity=0.709  Sum_probs=205.5

Q ss_pred             cccCCCCCceEEEEEEEeecCc------eEEEEeeccccccCCCeEEEEEEecccCCcceEEEEecCCCCCCCCCceeee
Q 016452           98 VKQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGK  171 (389)
Q Consensus        98 LkqPgPr~~~iQC~I~R~k~~~------tY~LyL~l~~~~~e~gkfLLaArK~rr~~tsnYiISld~~dlSr~s~~yvGK  171 (389)
                      |.||||+|++|||+|+|||+++      +|+|||+..   .++++|||||||+|+++++|||||+|++|+||++++||||
T Consensus        14 l~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~---~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~yvGK   90 (265)
T d1c8za_          14 ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRE---DGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGK   90 (265)
T ss_dssp             HHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECT---TSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCCCSEE
T ss_pred             hcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccC---CCceeEEEEEeeecCCCcceEEEEccHHHhcccccceeEE
Confidence            9999999999999999999875      688888632   3345799999999999999999999999999999999999


Q ss_pred             eeccceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCccccc
Q 016452          172 LRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIE  251 (389)
Q Consensus       172 LRSNflGTkF~iYD~g~p~~~a~~~~~rs~~~~~~k~vsp~~p~g~~ela~V~Ye~NVLg~rGPRrM~~~m~~Ip~s~i~  251 (389)
                      |||||+||+|+|||+|.+++.++..             +....+.++|||+|+||+||||+||||+|+|+||.++.+...
T Consensus        91 lrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~~~~~  157 (265)
T d1c8za_          91 LRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHER  157 (265)
T ss_dssp             EEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCTTSCB
T ss_pred             eeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEEecCCCccccc
Confidence            9999999999999999665543311             112234578999999999999999999999999987532110


Q ss_pred             CCCCCCccceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceecccccee
Q 016452          252 SGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNF  331 (389)
Q Consensus       252 ~gg~~P~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNF  331 (389)
                          .    .+.          |     ....++.+....+...+++++|+||+|+||++++||+|||+|||++||||||
T Consensus       158 ----~----~~~----------p-----~~~~~~~~~~~~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~~SvKNF  214 (265)
T d1c8za_         158 ----V----CIR----------P-----RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNF  214 (265)
T ss_dssp             ----C----CCC----------C-----SSTTSSHHHHHHTTCCSSEEEEEECCCEEETTTTEEEEEETTEEEECBTTEE
T ss_pred             ----c----ccC----------C-----CCcchhhhHHhhccCcccceEEecCCCeeeccCCEEEeccCCEEeccccceE
Confidence                0    010          0     0111122222334467899999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016452          332 QLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  389 (389)
Q Consensus       332 QLv~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACE  389 (389)
                      |||+..       +++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       215 ql~~~~-------~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         215 QIIHGN-------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             EEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             EEEeCC-------CCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            999863       678999999999999999999999999999999999999999998
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure