Query 016453
Match_columns 389
No_of_seqs 277 out of 848
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04832 SOUL: SOUL heme-bindi 100.0 2.7E-49 5.9E-54 360.1 12.6 168 215-383 1-176 (176)
2 PF10184 DUF2358: Uncharacteri 99.9 3.4E-26 7.5E-31 194.5 14.1 107 74-183 2-113 (113)
3 TIGR02096 conserved hypothetic 99.3 3.6E-11 7.8E-16 102.1 12.0 98 92-191 18-123 (129)
4 KOG4457 Uncharacterized conser 99.3 2.1E-11 4.6E-16 108.7 10.2 118 65-184 28-165 (202)
5 PF07366 SnoaL: SnoaL-like pol 99.1 8.3E-10 1.8E-14 94.0 10.8 110 79-191 3-121 (126)
6 cd00781 ketosteroid_isomerase 99.1 5.8E-10 1.3E-14 94.0 9.3 94 92-191 23-119 (122)
7 PF12680 SnoaL_2: SnoaL-like d 98.9 1.7E-08 3.7E-13 80.4 10.5 86 93-183 16-102 (102)
8 PF07858 LEH: Limonene-1,2-epo 97.9 7.9E-05 1.7E-09 64.8 8.7 112 74-191 5-118 (125)
9 TIGR02960 SigX5 RNA polymerase 97.3 0.0027 5.8E-08 62.6 11.9 90 92-191 224-317 (324)
10 PRK08241 RNA polymerase factor 97.2 0.0031 6.8E-08 62.8 10.9 112 70-191 211-327 (339)
11 PRK10016 DNA gyrase inhibitor; 96.9 0.056 1.2E-06 47.8 15.1 142 229-384 2-154 (156)
12 PF06445 GyrI-like: GyrI-like 96.5 0.1 2.2E-06 44.0 13.4 141 229-383 2-155 (155)
13 TIGR02246 conserved hypothetic 96.1 0.12 2.7E-06 42.9 11.6 81 74-154 4-91 (128)
14 COG4319 Ketosteroid isomerase 96.0 0.092 2E-06 46.3 10.5 100 74-175 10-116 (137)
15 cd00531 NTF2_like Nuclear tran 95.7 0.13 2.7E-06 41.3 9.8 107 78-188 3-124 (124)
16 COG3631 Ketosteroid isomerase- 95.0 0.21 4.5E-06 43.9 9.4 111 75-191 6-125 (133)
17 COG3449 DNA gyrase inhibitor [ 94.9 0.36 7.9E-06 43.4 10.7 140 229-382 2-149 (154)
18 KOG2546 Abl interactor ABI-1, 94.6 0.0032 6.9E-08 64.2 -3.2 125 48-178 42-177 (483)
19 PF13474 SnoaL_3: SnoaL-like d 93.1 1.2 2.5E-05 36.4 10.0 80 92-174 19-103 (121)
20 COG4308 LimA Limonene-1,2-epox 91.4 0.63 1.4E-05 40.2 6.3 109 74-191 10-121 (130)
21 PRK10016 DNA gyrase inhibitor; 91.3 1.4 2.9E-05 38.9 8.8 71 311-383 2-72 (156)
22 PF14534 DUF4440: Domain of un 91.1 1.9 4.2E-05 34.0 8.7 80 92-174 19-99 (107)
23 COG5485 Predicted ester cyclas 88.7 1.2 2.5E-05 38.7 5.7 90 97-191 30-125 (131)
24 smart00871 AraC_E_bind Bacteri 87.6 15 0.00034 30.6 15.4 124 250-383 26-158 (158)
25 COG4978 Transcriptional regula 85.2 6.6 0.00014 35.3 9.0 139 231-383 6-152 (153)
26 PF03284 PHZA_PHZB: Phenazine 84.1 15 0.00032 33.0 10.3 96 93-191 38-143 (162)
27 PF06445 GyrI-like: GyrI-like 83.1 3.6 7.7E-05 34.5 6.1 57 311-367 2-60 (155)
28 PF13577 SnoaL_4: SnoaL-like d 81.6 15 0.00033 30.0 9.4 80 74-154 7-94 (127)
29 COG3449 DNA gyrase inhibitor [ 81.4 10 0.00022 34.3 8.5 70 311-382 2-72 (154)
30 COG4922 Uncharacterized protei 79.1 17 0.00037 31.4 8.6 71 110-191 43-114 (129)
31 PF02136 NTF2: Nuclear transpo 75.0 11 0.00024 31.0 6.5 77 77-154 4-85 (118)
32 COG3708 Uncharacterized protei 69.2 50 0.0011 29.8 9.7 90 287-384 66-156 (157)
33 PRK15121 right oriC-binding tr 64.1 25 0.00054 34.2 7.3 69 313-383 215-288 (289)
34 PRK09636 RNA polymerase sigma 62.4 47 0.001 32.3 9.0 77 92-183 191-277 (293)
35 smart00871 AraC_E_bind Bacteri 62.0 47 0.001 27.6 7.9 55 312-366 2-59 (158)
36 TIGR03357 VI_zyme type VI secr 57.4 1.1E+02 0.0024 26.3 9.5 92 63-155 14-111 (133)
37 COG4978 Transcriptional regula 40.5 1.2E+02 0.0026 27.3 7.1 56 310-366 3-58 (153)
38 PHA00159 endonuclease I 36.9 54 0.0012 29.2 4.1 46 340-385 20-69 (148)
39 cd00780 NTF2 Nuclear transport 30.7 3.1E+02 0.0067 22.6 9.0 59 77-136 8-67 (119)
40 PF14526 Cass2: Integron-assoc 28.6 3.6E+02 0.0078 22.7 13.6 117 252-382 30-150 (150)
41 PF08332 CaMKII_AD: Calcium/ca 22.8 5.1E+02 0.011 22.5 9.0 63 93-155 24-93 (128)
42 COG5429 Uncharacterized secret 22.7 34 0.00074 33.1 0.5 16 181-196 76-91 (261)
No 1
>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []. It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.
Probab=100.00 E-value=2.7e-49 Score=360.10 Aligned_cols=168 Identities=36% Similarity=0.565 Sum_probs=134.1
Q ss_pred CCCCCceeEeeecCCeEEEEecCcEEEEeccC----CcccchhHHHhhhcccCCCCCCCCCCCCCcEEEEeecC---CC-
Q 016453 215 DLETPKYQILKRTANYEVRRYSPFIVVETNGD----KLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDN---EL- 286 (389)
Q Consensus 215 ~~E~P~Y~Vl~~~~~yEiR~Y~~~~~a~t~~~----~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~---~~- 286 (389)
+.|||+|+|+++.++||||+|++++||||+.. +.|...||++|++||+|+|+++++|+||+||++++.+. .|
T Consensus 1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~~~~~~~~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~~~~~~~~~ 80 (176)
T PF04832_consen 1 DIECPPYEVLKKGDDYEIRRYPPAKWASTTVSGCSFEEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVIPMTAESCE 80 (176)
T ss_dssp --BS-SEEEECCCSSCEEEEE--CEEEEEEEECS-HHHHHHHHHHHHHHHHCT-CTT------BS-EEEEEEETTTTTCE
T ss_pred CCcCCCeEEEEeCCCEEEEEECCceEEEEEecCCChhHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEEcCCCcccC
Confidence 47999999999999999999999999999876 34788999999999999999999999999999998421 23
Q ss_pred cEEEEEEEecCCCCCCCCCCCCCCCeeEEEeCCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCcccCceEEEEEcCC
Q 016453 287 KKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDP 366 (389)
Q Consensus 287 ~~~tmsF~lP~~~~~~~~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~Gl~~~~~~~~A~Yd~P 366 (389)
+.++|||+||++++.++||+|+|++|+|+++|++++||++|+|+++++.+.+++++|+++|+++|+...+.+++|+||+|
T Consensus 81 ~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~a~Yd~P 160 (176)
T PF04832_consen 81 KEYTMSFFLPSEYQAENPPKPTDPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDGLKDKGYYYVAGYDPP 160 (176)
T ss_dssp CEEEEEEE--HHHC-TS---BSSTTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTTHHCCCEEEEEESSSS
T ss_pred CcEEEEEEcCcccccccCCCCCCCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCCcCCCeEEEEcCCC
Confidence 68999999999999899999999999999999999999999999999999999999999999999996679999999999
Q ss_pred CCCCCCCceeeEEEEec
Q 016453 367 GQTWSFIMRNEVLIWLE 383 (389)
Q Consensus 367 ~~t~~~~RrNEV~i~v~ 383 (389)
|+++++|||||||+|+
T Consensus 161 -~~~~~~R~NEV~i~v~ 176 (176)
T PF04832_consen 161 -FTPPFNRRNEVWIPVK 176 (176)
T ss_dssp --SSSSSSCEEEEEE--
T ss_pred -CCCccCcceEEEEecC
Confidence 8899999999999986
No 2
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=99.94 E-value=3.4e-26 Score=194.46 Aligned_cols=107 Identities=33% Similarity=0.624 Sum_probs=98.1
Q ss_pred HHHHHHHhhccccccCCCccccccCCceEEeCCCCcccChHHHHHHHH---HHhhhc--ccEEEEEEeEEcCCcEEEEEE
Q 016453 74 WLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNIS---MLKMVF--RPAFQLHWVKQTGPYEITTRW 148 (389)
Q Consensus 74 ~~~~~L~~dy~~lf~~~~~~~~iY~~dv~F~DP~~~~~Gl~~y~~~~~---~L~~~~--~~~f~v~~~~~~~~~~i~~rW 148 (389)
++++.||+||+++| .+.++.+||++||+|+||+++|+|+++|+++|+ .++.++ +++++|+++.+.+++.|.+||
T Consensus 2 ~~~~~Lr~D~~~~f-~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~rW 80 (113)
T PF10184_consen 2 DVIRTLREDLPRFF-TGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRARW 80 (113)
T ss_pred hHHHHHHHHHHHHh-cCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEEE
Confidence 58999999999999 477899999999999999999999999999954 555533 799999999998866999999
Q ss_pred EEEEEecCCCCCCcEEEEEEEEEEEeCCCCceEEe
Q 016453 149 TMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSH 183 (389)
Q Consensus 149 ~m~~~~~~Lpw~~~i~v~G~S~l~~~~~~GkI~~H 183 (389)
+|++.+ ++||+|.+.++|+|+|++|++ |+|++|
T Consensus 81 ~~~g~~-~l~w~p~~~~~G~S~~~ln~~-g~I~~H 113 (113)
T PF10184_consen 81 RLRGVP-RLPWRPRISFDGTSTYTLNSD-GLIYRH 113 (113)
T ss_pred EEEEEe-CCCcCCcEEEEEEEEEEECCC-CcEEeC
Confidence 999987 999999999999999999999 999999
No 3
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.29 E-value=3.6e-11 Score=102.06 Aligned_cols=98 Identities=10% Similarity=0.134 Sum_probs=81.8
Q ss_pred ccccccCCceEEeCCCC--cccChHHHHHHHHHHhhhc-ccEEEEEEeEEcCCcEEEEEEEEEEEecC----C-CCCCcE
Q 016453 92 IDRTAYDEQVKFRDPIT--KHDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEITTRWTMVMKFMP----L-PWKPEL 163 (389)
Q Consensus 92 ~~~~iY~~dv~F~DP~~--~~~Gl~~y~~~~~~L~~~~-~~~f~v~~~~~~~~~~i~~rW~m~~~~~~----L-pw~~~i 163 (389)
...++|++|++|.||.. .+.|++++++.++.+...+ +.+++++++...+++.+.+.|+|++.++. + +.+.++
T Consensus 18 ~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~~~g~~~g~~~~g~~~ 97 (129)
T TIGR02096 18 AVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVVVCRNDEGVRVAAEWTVHGTYRTAFLGLPASGKTY 97 (129)
T ss_pred HHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchhhceeEEEEecCCcEEEEEEEEeeeeccccCCCCCCCCEE
Confidence 38899999999999975 4678999999998776444 77899988877663499999999999832 2 356688
Q ss_pred EEEEEEEEEEeCCCCceEEeeeeeccCC
Q 016453 164 VFTGTSVMGINPETGKFCSHLDLWDSIK 191 (389)
Q Consensus 164 ~v~G~S~l~~~~~~GkI~~H~DyWD~~~ 191 (389)
.+.|++.++|+ + |||++|++|||...
T Consensus 98 ~~~~~~~~~~~-~-gkI~~~~~y~D~~~ 123 (129)
T TIGR02096 98 SIRGVTFFVFD-D-GKIKRETTYYNLAT 123 (129)
T ss_pred EeeeeEEEEEe-C-CEEEEEEEEecHHH
Confidence 99999999998 6 99999999999765
No 4
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=2.1e-11 Score=108.70 Aligned_cols=118 Identities=22% Similarity=0.369 Sum_probs=96.9
Q ss_pred CCCCccCHHHHHHHHHhhccccccCCCccccccCCceEEeCCCCcc--cChHHHHHHHHHHh---hhc--ccEEEEEEeE
Q 016453 65 PPQSTVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKH--DTISGYLFNISMLK---MVF--RPAFQLHWVK 137 (389)
Q Consensus 65 ~~~~~~~~~~~~~~L~~dy~~lf~~~~~~~~iY~~dv~F~DP~~~~--~Gl~~y~~~~~~L~---~~~--~~~f~v~~~~ 137 (389)
.++...+++.+-+.|++.+|.+|. ...+.++|+.||+|.|-+..+ .|+..|...|.+++ .++ +.+|++.++.
T Consensus 28 ~~~~pe~L~~~yerLr~tlPklF~-~~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt 106 (202)
T KOG4457|consen 28 EKPAPEQLEHVYERLRETLPKLFR-RRMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVT 106 (202)
T ss_pred cCCChHHHHHHHHHHHHHhHHHHh-hcccceeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeec
Confidence 445667889999999999999999 668999999999999999865 59999999988775 334 5788888887
Q ss_pred E-cCCcEEEEEEEEEEEe-cCCCCCCcE-----------EEEEEEEEEEeCCCCceEEee
Q 016453 138 Q-TGPYEITTRWTMVMKF-MPLPWKPEL-----------VFTGTSVMGINPETGKFCSHL 184 (389)
Q Consensus 138 ~-~~~~~i~~rW~m~~~~-~~Lpw~~~i-----------~v~G~S~l~~~~~~GkI~~H~ 184 (389)
. .++.++..|||+.|.. .++-|++.+ .++|-|++.+|++ |.|++|+
T Consensus 107 ~h~d~~Tvr~RWRv~gvsv~~~f~~~~l~~~de~~~~~swyDgYSv~yl~~~-GlI~kh~ 165 (202)
T KOG4457|consen 107 PHIDEGTVRCRWRVKGVSVTRIFMNPRLLRFDERMQNLSWYDGYSVLYLDGN-GLIYKHT 165 (202)
T ss_pred ccCCCceEEEEEEEecceEeeeeechHHhhHHHHhcccccccceeEEEECCC-ceEEeee
Confidence 5 4458999999999875 233455532 4899999999988 9999996
No 5
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=99.09 E-value=8.3e-10 Score=93.96 Aligned_cols=110 Identities=18% Similarity=0.267 Sum_probs=90.6
Q ss_pred HHhhccccccCCC--ccccccCCceEEeCCC-CcccChHHHHHHHHHHhhhc-ccEEEEEEeEEcCCcEEEEEEEEEEEe
Q 016453 79 LYDDLPHLFDDQG--IDRTAYDEQVKFRDPI-TKHDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEITTRWTMVMKF 154 (389)
Q Consensus 79 L~~dy~~lf~~~~--~~~~iY~~dv~F~DP~-~~~~Gl~~y~~~~~~L~~~~-~~~f~v~~~~~~~~~~i~~rW~m~~~~ 154 (389)
+++.|...+..+. ...++|++|+.+.+|. ....|+++|+..+..+...| +.++++.++...| +.+.++|+++|+|
T Consensus 3 v~~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~g-d~v~~~~~~~Gth 81 (126)
T PF07366_consen 3 VRRFYEEVWNRGDLDALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEIEDVVAEG-DRVAVRWTFTGTH 81 (126)
T ss_dssp HHHHHHHHHHTT-GCHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEET-TEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CEEEEEEEEEEee
Confidence 4445555544333 4889999999999997 68889999999999887766 8899999998888 9999999999999
Q ss_pred cC-----CCCCCcEEEEEEEEEEEeCCCCceEEeeeeeccCC
Q 016453 155 MP-----LPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (389)
Q Consensus 155 ~~-----Lpw~~~i~v~G~S~l~~~~~~GkI~~H~DyWD~~~ 191 (389)
.. -|-+..+.+.|++.++|++ |||++|..+||..+
T Consensus 82 ~g~~~g~~ptgk~v~~~~~~~~~~~~--gkI~e~~~~~D~~~ 121 (126)
T PF07366_consen 82 TGEFMGIPPTGKPVEFRGMSIFRFED--GKIVEEWVYFDELS 121 (126)
T ss_dssp SSEBTTBE-TTEEEEEEEEEEEEEET--TEEEEEEEEECHHH
T ss_pred cCCcCCcCCCCCEEEEEEEEEEEEEC--CEEEEEEEEECHHH
Confidence 43 1355688999999999994 99999999999755
No 6
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=99.08 E-value=5.8e-10 Score=94.01 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=74.5
Q ss_pred ccccccCCceEEeCCCC--cccChHHHHHHHHHHhh-hcccEEEEEEeEEcCCcEEEEEEEEEEEecCCCCCCcEEEEEE
Q 016453 92 IDRTAYDEQVKFRDPIT--KHDTISGYLFNISMLKM-VFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGT 168 (389)
Q Consensus 92 ~~~~iY~~dv~F~DP~~--~~~Gl~~y~~~~~~L~~-~~~~~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~ 168 (389)
...++|++|++|.||.. .++|++++++.+..+.. ....++.+......+ +.+.+.|+++... -+..+.+.|+
T Consensus 23 ~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~----~g~~~~~~~~ 97 (122)
T cd00781 23 GIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGGAKRLELTGPVRASHG-GEAAFAFRVEFEW----EGQPCVVRVI 97 (122)
T ss_pred HHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhccCceEEecCceeeecC-CEEEEEEEEEEEe----CCceEEEEEE
Confidence 48899999999999975 48999999998887643 334444444444455 7788899998765 2667899999
Q ss_pred EEEEEeCCCCceEEeeeeeccCC
Q 016453 169 SVMGINPETGKFCSHLDLWDSIK 191 (389)
Q Consensus 169 S~l~~~~~~GkI~~H~DyWD~~~ 191 (389)
+.++|+++ |||.++++|||...
T Consensus 98 ~v~~~~~d-GkI~~~~~y~d~~~ 119 (122)
T cd00781 98 DVMRFDAD-GRIVSMRAYWGPVN 119 (122)
T ss_pred EEEEECCC-ccChHHHHhcCccc
Confidence 99999877 99999999999865
No 7
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=98.89 E-value=1.7e-08 Score=80.43 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=75.4
Q ss_pred cccccCCceEEeCCCCcccChHHHHHHHHHHhh-hcccEEEEEEeEEcCCcEEEEEEEEEEEecCCCCCCcEEEEEEEEE
Q 016453 93 DRTAYDEQVKFRDPITKHDTISGYLFNISMLKM-VFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVM 171 (389)
Q Consensus 93 ~~~iY~~dv~F~DP~~~~~Gl~~y~~~~~~L~~-~~~~~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~S~l 171 (389)
..++|+|||+|.||...+.|.+++...++.+.. ....+++++++...| +.+.+.|+++++. .+-+..+.+.|++.+
T Consensus 16 i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-d~v~~~~~~~~~~--~~~g~~~~~~~~~~~ 92 (102)
T PF12680_consen 16 IAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRFEIHDIFADG-DRVVVEWTVTGTT--PPTGQPISFRGCSVF 92 (102)
T ss_dssp HHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEET-TEEEEEEEEEEEE--TTTSCEEEEEEEEEE
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEEEEEEcC-CEEEEEEEEEEEE--cCCCCEEEEEEEEEE
Confidence 679999999999998899999999999887754 457899999998888 8999999999974 356778899999999
Q ss_pred EEeCCCCceEEe
Q 016453 172 GINPETGKFCSH 183 (389)
Q Consensus 172 ~~~~~~GkI~~H 183 (389)
+|. + |||++|
T Consensus 93 ~~~-d-gkI~~~ 102 (102)
T PF12680_consen 93 RFE-D-GKIVEH 102 (102)
T ss_dssp EEE-T-TEEEEE
T ss_pred EEE-C-CEEEEC
Confidence 996 5 999998
No 8
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=97.86 E-value=7.9e-05 Score=64.75 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=74.6
Q ss_pred HHHHHHHhhccccccCCCccccccCCc-eEEeCCCCcccChHHHHHHHHHH-hhhcccEEEEEEeEEcCCcEEEEEEEEE
Q 016453 74 WLVGFLYDDLPHLFDDQGIDRTAYDEQ-VKFRDPITKHDTISGYLFNISML-KMVFRPAFQLHWVKQTGPYEITTRWTMV 151 (389)
Q Consensus 74 ~~~~~L~~dy~~lf~~~~~~~~iY~~d-v~F~DP~~~~~Gl~~y~~~~~~L-~~~~~~~f~v~~~~~~~~~~i~~rW~m~ 151 (389)
++++.|.+-+....... ....+.++| ++..-|+-.++|+++..+.++.+ ..+....++||.+...| .+.+.+|+-
T Consensus 5 ~vV~~F~~a~~~~D~~~-a~~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~~~~~~~~e~~i~~iaadg--~~VltER~D 81 (125)
T PF07858_consen 5 EVVRAFLAALEDRDVDA-ALASLFDDDAVYHNVPLPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIAADG--DVVLTERTD 81 (125)
T ss_dssp HHHHHHHHHHHHT-HHH-HHHHCEECC-EEEETTTEEEESHHHHHHHHHCCHCCCEEEEEEEEEEEEET--TEEEEEEEE
T ss_pred HHHHHHHHHHHcCCHHH-HHHHhcCCCcEEEeCCCCCcccHHHHHHHHHHHhcccceeEEEEEEEeecC--CEEEEEeEe
Confidence 34555555554333211 245778999 88899999999999999998877 45557889999998766 667777776
Q ss_pred EEecCCCCCCcEEEEEEEEEEEeCCCCceEEeeeeeccCC
Q 016453 152 MKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (389)
Q Consensus 152 ~~~~~Lpw~~~i~v~G~S~l~~~~~~GkI~~H~DyWD~~~ 191 (389)
--. ...++..+.+.-|-++.+. + |||+.-|||||+..
T Consensus 82 ~l~-~~dG~~~~~~~V~GvfEv~-d-GkI~~WRDYFD~~~ 118 (125)
T PF07858_consen 82 VLR-FADGPLRIQFPVCGVFEVR-D-GKITLWRDYFDLAD 118 (125)
T ss_dssp EEE-ETTTTEEEEEEEEEEEEEE-T-TEEEEEEEE--HHH
T ss_pred eee-eecCCeEEEEEEEEEEEEE-C-CEEEEEeccCCHHH
Confidence 654 1122234444444445555 4 99999999999865
No 9
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=97.29 E-value=0.0027 Score=62.63 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=66.9
Q ss_pred ccccccCCceEEeCCCC--cccChHHHHHHHHHH--hhhcccEEEEEEeEEcCCcEEEEEEEEEEEecCCCCCCcEEEEE
Q 016453 92 IDRTAYDEQVKFRDPIT--KHDTISGYLFNISML--KMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTG 167 (389)
Q Consensus 92 ~~~~iY~~dv~F~DP~~--~~~Gl~~y~~~~~~L--~~~~~~~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G 167 (389)
-..+++++||+|.+|.. .+.|.+++...|..+ ...+ ..+.+......| +.+.+.|... +-+..+.+.|
T Consensus 224 ~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~-~~~~~~~~~~~g-~~~~v~~~~~------~~~~~~~~~~ 295 (324)
T TIGR02960 224 ALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGEGA-AGMRLLPTIANG-QPAAAMYMRR------PDAERHTAFQ 295 (324)
T ss_pred HHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhcccccC-CceeEEEeeecC-CceEEEEEEc------CCCCeeeeeE
Confidence 37899999999999985 499999999888776 3222 344444444556 6777776311 1244678999
Q ss_pred EEEEEEeCCCCceEEeeeeeccCC
Q 016453 168 TSVMGINPETGKFCSHLDLWDSIK 191 (389)
Q Consensus 168 ~S~l~~~~~~GkI~~H~DyWD~~~ 191 (389)
+..++|. + |||.....|||...
T Consensus 296 v~~~~~~-d-GkI~~~~~~~~~~~ 317 (324)
T TIGR02960 296 LHVLEIR-G-GRITHVTAFLDGPS 317 (324)
T ss_pred EEEEEEc-C-CcEEEEEEEcCCHH
Confidence 9999995 6 99999999999765
No 10
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=97.16 E-value=0.0031 Score=62.76 Aligned_cols=112 Identities=9% Similarity=-0.080 Sum_probs=74.6
Q ss_pred cCHHHHHHHHHhhccccccCCC--ccccccCCceEEeCCCCc--ccChHHHHHHHHHHhhhc-ccEEEEEEeEEcCCcEE
Q 016453 70 VDVEWLVGFLYDDLPHLFDDQG--IDRTAYDEQVKFRDPITK--HDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEI 144 (389)
Q Consensus 70 ~~~~~~~~~L~~dy~~lf~~~~--~~~~iY~~dv~F~DP~~~--~~Gl~~y~~~~~~L~~~~-~~~f~v~~~~~~~~~~i 144 (389)
.+.+...+.+++.|..+.. ++ ...++++|||++.+|-.. +.|.+++...+..+.... ...+.+......| +.+
T Consensus 211 ~~~~~~~~~v~~~~~A~~~-gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~g-~~v 288 (339)
T PRK08241 211 PDDPEERALLARYVAAFEA-YDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVPTRANG-QPA 288 (339)
T ss_pred CCChHHHHHHHHHHHHHhc-CCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhhccccCCCceEEEEeecCC-CeE
Confidence 3444444555554544433 33 377999999999999875 999999998887763222 1233443334445 566
Q ss_pred EEEEEEEEEecCCCCCCcEEEEEEEEEEEeCCCCceEEeeeeeccCC
Q 016453 145 TTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (389)
Q Consensus 145 ~~rW~m~~~~~~Lpw~~~i~v~G~S~l~~~~~~GkI~~H~DyWD~~~ 191 (389)
.+.+. .. .-+..+.+.|++.++++ + |||.+-++|||...
T Consensus 289 ~~~~~---~~---~~g~~~~~~~v~v~~v~-d-GkI~~~~~y~d~~~ 327 (339)
T PRK08241 289 FAQYM---RD---PDGGGHRPWALHVLELR-G-GRIAHVTSFLDTTL 327 (339)
T ss_pred EEEEE---Ec---CCCCeeecceEEEEEEe-C-CEEEEEEEEcChhh
Confidence 66432 11 22456788899999999 6 99999999999743
No 11
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=96.86 E-value=0.056 Score=47.79 Aligned_cols=142 Identities=18% Similarity=0.155 Sum_probs=93.2
Q ss_pred CeEEEEecCcEEEEeccC--C-cccchhHHHhhhcccCCCCCCCCCCCCCcEEEEeecCC----Cc--EEEEEEEecCCC
Q 016453 229 NYEVRRYSPFIVVETNGD--K-LSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDNE----LK--KVSIQIVLPQDK 299 (389)
Q Consensus 229 ~yEiR~Y~~~~~a~t~~~--~-~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~----~~--~~tmsF~lP~~~ 299 (389)
+++|+..++..++..... . .....+|.+|+.++..+|-. .+ +.+.-..+.. .+ ++-+++.+|...
T Consensus 2 ~v~i~~~~~~~va~ir~~g~~~~~~~~~~~~L~~~~~~~~l~-----~~-~~~~i~~D~p~~~~~~~~R~d~~i~v~~~~ 75 (156)
T PRK10016 2 NYEIKQEQKRTIAGFHLVGPWEQTVKQGFEQLMMWVDSHNIV-----PK-EWVAVYYDNPDEVPAEKLRCDTVVTVPDDF 75 (156)
T ss_pred ceEEEEccCceEEEEEeecCchhHHHHHHHHHHHHHHHcCCC-----CC-cEEEEECCCCCCCChHHceeeEEEEeCCCc
Confidence 467888888888765532 1 23568999999999655432 22 2333322111 12 378899999864
Q ss_pred CCCCCCCCCCCCeeEEEeCCeEEEEEEecCCCChHHHHHHHHH-HHHHHHhCCCcccCceEEEEEc-CCCCCCCCCceee
Q 016453 300 DMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKE-LHTSLIRDGLRPKIGCLLARYN-DPGQTWSFIMRNE 377 (389)
Q Consensus 300 ~~~~~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~-L~~~L~~~Gl~~~~~~~~A~Yd-~P~~t~~~~RrNE 377 (389)
. +| +.+..+.+..+|++++||..+.|. -+.+.+.-.. +.+||..+|.+..+.+-+--|. .|. .+-.-.=|
T Consensus 76 ~---~~-~~~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~~~~~p~~E~Y~~~~~--~~~~~~te 147 (156)
T PRK10016 76 V---LP-ENSEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQMAPKPCFEVYLNDGA--EDGYWDIE 147 (156)
T ss_pred c---cC-CCCCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCccCCCCCEEEeCCCCC--CCCcEEEE
Confidence 2 22 223479999999999999999995 4456666656 7899999999987544444454 341 12233459
Q ss_pred EEEEecc
Q 016453 378 VLIWLEE 384 (389)
Q Consensus 378 V~i~v~~ 384 (389)
|||+|+.
T Consensus 148 i~iPI~~ 154 (156)
T PRK10016 148 MYVPVQK 154 (156)
T ss_pred EEEEeEE
Confidence 9999974
No 12
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=96.46 E-value=0.1 Score=44.05 Aligned_cols=141 Identities=21% Similarity=0.245 Sum_probs=93.5
Q ss_pred CeEEEEecCcEEEEeccC----Ccc-cchhHHHhhhcccCCCCCCCCCCCCCcEEEEeecC----CC--cEEEEEEEecC
Q 016453 229 NYEVRRYSPFIVVETNGD----KLS-GSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDN----EL--KKVSIQIVLPQ 297 (389)
Q Consensus 229 ~yEiR~Y~~~~~a~t~~~----~~A-~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~----~~--~~~tmsF~lP~ 297 (389)
+++|+.-++..++..... ... ....+.+|..++.-.+... ...|.+.-..+. .. -.+.+++.++.
T Consensus 2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (155)
T PF06445_consen 2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNITDDEEFRYDIGVEVDE 77 (155)
T ss_dssp CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTSSTGCEEEEEEEEEECT
T ss_pred CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhccc----CCCcceeEEeccccccCCcceEEEEEEEEcc
Confidence 478888888888765543 111 5678888888875221111 444555443321 12 34555666555
Q ss_pred CCCCCCCCCCCCCCeeEEEeCCeEEEEEEecCCCChHHHHHHHHHHHH-HHHhCCCcccCc-eEEEEEcCCCCCCCCCce
Q 016453 298 DKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHT-SLIRDGLRPKIG-CLLARYNDPGQTWSFIMR 375 (389)
Q Consensus 298 ~~~~~~~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~-~L~~~Gl~~~~~-~~~A~Yd~P~~t~~~~Rr 375 (389)
.. +..+++....+|++.+|+..|.|.. +.+.+....|.. +|.+.|+....+ .+-.-.+.| ++..-.-.
T Consensus 78 ~~-------~~~~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~~~~~~~~E~y~~~~-~~~~~~~~ 147 (155)
T PF06445_consen 78 DV-------PNPDGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYERRDGPDFEIYLNDP-DTDEEEYV 147 (155)
T ss_dssp TC-------SGCTTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCEEESSEEEEEEESST-TTTSCGEE
T ss_pred cc-------cCCceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCccCCCCcEEEECCCC-CCCCCceE
Confidence 42 3466789999999999999999988 778888889999 999999954444 344444555 33344567
Q ss_pred eeEEEEec
Q 016453 376 NEVLIWLE 383 (389)
Q Consensus 376 NEV~i~v~ 383 (389)
=||||||+
T Consensus 148 ~ei~iPik 155 (155)
T PF06445_consen 148 TEIYIPIK 155 (155)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEC
Confidence 79999985
No 13
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=96.05 E-value=0.12 Score=42.94 Aligned_cols=81 Identities=6% Similarity=-0.067 Sum_probs=54.0
Q ss_pred HHHHHHHhhccccccCCC--ccccccCCceEEeCCC-CcccChHHHHHHHHHHhh-hcc---cEEEEEEeEEcCCcEEEE
Q 016453 74 WLVGFLYDDLPHLFDDQG--IDRTAYDEQVKFRDPI-TKHDTISGYLFNISMLKM-VFR---PAFQLHWVKQTGPYEITT 146 (389)
Q Consensus 74 ~~~~~L~~dy~~lf~~~~--~~~~iY~~dv~F~DP~-~~~~Gl~~y~~~~~~L~~-~~~---~~f~v~~~~~~~~~~i~~ 146 (389)
+.|+.|.+.|...+..++ ...++|++|+.|.++. ..+.|.++++.++..+.. ... .++++..+...+++.+.+
T Consensus 4 ~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~ 83 (128)
T TIGR02246 4 RAIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIV 83 (128)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEE
Confidence 356666666776666555 4889999999999554 467999999998875542 222 355555666566566666
Q ss_pred EEEEEEEe
Q 016453 147 RWTMVMKF 154 (389)
Q Consensus 147 rW~m~~~~ 154 (389)
....++..
T Consensus 84 ~~~~~~~~ 91 (128)
T TIGR02246 84 HAIQTITA 91 (128)
T ss_pred EEEEEEEc
Confidence 55544443
No 14
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=95.96 E-value=0.092 Score=46.32 Aligned_cols=100 Identities=8% Similarity=-0.022 Sum_probs=71.6
Q ss_pred HHHHHHHhhccccccCCCc--cccccCCceEEeCCC-CcccChHHHHHHHHHHhhhc--ccEEEEEEeE--EcCCcEEEE
Q 016453 74 WLVGFLYDDLPHLFDDQGI--DRTAYDEQVKFRDPI-TKHDTISGYLFNISMLKMVF--RPAFQLHWVK--QTGPYEITT 146 (389)
Q Consensus 74 ~~~~~L~~dy~~lf~~~~~--~~~iY~~dv~F~DP~-~~~~Gl~~y~~~~~~L~~~~--~~~f~v~~~~--~~~~~~i~~ 146 (389)
..|+.+-.|+...+...+. ..+.|+||++|=||. -.++|.++|++.++....++ ...|++.++. ..| +.+++
T Consensus 10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~G-D~a~~ 88 (137)
T COG4319 10 DAIRAAIADWAAAVRAKDADAVADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESG-DVAFV 88 (137)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccC-CEEEE
Confidence 4566666666555554543 678899999999997 58899999999999887555 5688888876 567 77776
Q ss_pred EEEEEEEecCCCCCCcEEEEEEEEEEEeC
Q 016453 147 RWTMVMKFMPLPWKPELVFTGTSVMGINP 175 (389)
Q Consensus 147 rW~m~~~~~~Lpw~~~i~v~G~S~l~~~~ 175 (389)
.=..++.- +.+.++.....|.-++.|..
T Consensus 89 ~~~~~~~~-~~~dg~~~~~~~Rat~v~rK 116 (137)
T COG4319 89 TALLLLTG-TKKDGPPADLAGRATYVFRK 116 (137)
T ss_pred EEeeeeec-cCCCCcchhheeeeEEEEEE
Confidence 65555544 23556666677777777763
No 15
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=95.67 E-value=0.13 Score=41.33 Aligned_cols=107 Identities=14% Similarity=0.067 Sum_probs=66.5
Q ss_pred HHHhhccccccCCC--ccccccCCceEEeCCC-----CcccChHHHHHHHHHHhh--hcccEE-EEEEeEEcCC---cEE
Q 016453 78 FLYDDLPHLFDDQG--IDRTAYDEQVKFRDPI-----TKHDTISGYLFNISMLKM--VFRPAF-QLHWVKQTGP---YEI 144 (389)
Q Consensus 78 ~L~~dy~~lf~~~~--~~~~iY~~dv~F~DP~-----~~~~Gl~~y~~~~~~L~~--~~~~~f-~v~~~~~~~~---~~i 144 (389)
.|...|...+..+. .+..+|++|++|..|. ....|+++++..++.+.. ....++ .-..+...++ ..+
T Consensus 3 ~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~ 82 (124)
T cd00531 3 QFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVVV 82 (124)
T ss_pred HHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEEE
Confidence 45555666655232 4889999999999998 577899999988876643 122222 1122222322 235
Q ss_pred EEEEEEEEEecCCCCCCcEEEEEEEEEEEeC--CCCceEEeeeeec
Q 016453 145 TTRWTMVMKFMPLPWKPELVFTGTSVMGINP--ETGKFCSHLDLWD 188 (389)
Q Consensus 145 ~~rW~m~~~~~~Lpw~~~i~v~G~S~l~~~~--~~GkI~~H~DyWD 188 (389)
...|.+..... +....+.|.-...+.. +.+||...+.+||
T Consensus 83 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~~ 124 (124)
T cd00531 83 SVFGVLRTRGD----GEQDVFAGGQTFVLRPQGGGGKIANRRFRLD 124 (124)
T ss_pred EEEEEEEEccC----CceeEEEEEEEEEEEEeCCEEEEEEEEEecC
Confidence 66677666541 3445566666666653 1288999988885
No 16
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=94.98 E-value=0.21 Score=43.89 Aligned_cols=111 Identities=12% Similarity=-0.042 Sum_probs=80.4
Q ss_pred HHHHHHhhccccccCCC--ccccccCCceEEeCCCC------cccChHHHHHHHHHHhhhc-ccEEEEEEeEEcCCcEEE
Q 016453 75 LVGFLYDDLPHLFDDQG--IDRTAYDEQVKFRDPIT------KHDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEIT 145 (389)
Q Consensus 75 ~~~~L~~dy~~lf~~~~--~~~~iY~~dv~F~DP~~------~~~Gl~~y~~~~~~L~~~~-~~~f~v~~~~~~~~~~i~ 145 (389)
..+.++.-|..+.. ++ -+.+++++|+++.=|.. -..|.+..+..|..+...+ .+++++..+...|+..+.
T Consensus 6 ~~~~v~~~f~a~~~-GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~gD~~~~ 84 (133)
T COG3631 6 NTDLVRRYFAALSR-GDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIEDGRFTVETVYVSGDPVGA 84 (133)
T ss_pred hhhHHHHHHHHHhc-CCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhhcccccccceEEEEcCCceEE
Confidence 44555555665554 33 48899999999984442 2346776677777776666 889999999998977776
Q ss_pred EEEEEEEEecCCCCCCcEEEEEEEEEEEeCCCCceEEeeeeeccCC
Q 016453 146 TRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (389)
Q Consensus 146 ~rW~m~~~~~~Lpw~~~i~v~G~S~l~~~~~~GkI~~H~DyWD~~~ 191 (389)
+.|.-.... .-+....-.=+..+++.+ |||++-++|||.-.
T Consensus 85 v~~~~~~~~---~~G~~~~~~~~~v~~vrd--GrI~~~~~y~D~~~ 125 (133)
T COG3631 85 VFRTRGRVS---RTGKPYENRYAFVIRVRD--GRITRYREYVDTLA 125 (133)
T ss_pred EEEecCccc---ccCceeecceEEEEEEeC--CEEEEEEEEechHh
Confidence 777665332 235556667788899984 99999999999876
No 17
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=94.87 E-value=0.36 Score=43.44 Aligned_cols=140 Identities=18% Similarity=0.211 Sum_probs=94.4
Q ss_pred CeEEEEecCcEEEEeccC--CcccchhHHHhhhcccCCCCCCCCCCCCCcEEEEeec------CCCcEEEEEEEecCCCC
Q 016453 229 NYEVRRYSPFIVVETNGD--KLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYD------NELKKVSIQIVLPQDKD 300 (389)
Q Consensus 229 ~yEiR~Y~~~~~a~t~~~--~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~------~~~~~~tmsF~lP~~~~ 300 (389)
++||+..++..+|.-... ..-..++|.+|..+-.-+|--. -++..+.-..+ .+.-++-.|..+|...
T Consensus 2 dv~I~e~p~~~VA~~rh~G~~~~~~~~~~~l~~W~~~~~l~p----~~S~~~gI~~ddP~~Tp~e~~R~D~cv~v~~~~- 76 (154)
T COG3449 2 DVEIIELPPIPVAYLRHVGDPATLKQTFEQLIAWRRENGLLP----EQSETLGIYQDDPDTTPAEKCRYDACVVVPEPI- 76 (154)
T ss_pred CceEEecCCceEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCC----CCceEEEEecCCCCCCCHHHceeeEEEEcCCcc-
Confidence 689999999999876533 2235689999999886544322 13333332221 1123577888888432
Q ss_pred CCCCCCCCCCCeeEEEeCCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCcccCceEEEEEcCCCCCCCCCceeeEEE
Q 016453 301 MSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDPGQTWSFIMRNEVLI 380 (389)
Q Consensus 301 ~~~~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~Gl~~~~~~~~A~Yd~P~~t~~~~RrNEV~i 380 (389)
+++++.|..-+.|++.+||.+|.|.. ++--..-..-+.+||.+.|....+.+.+.+|=..+ ...-..|+.+
T Consensus 77 -----~~n~~~v~~~~i~GG~YAV~r~~~~~-d~~~~aw~~if~ewlp~Sg~~~~d~P~~e~y~n~~---~~~~~~e~~v 147 (154)
T COG3449 77 -----PENSEGVQLGEIPGGLYAVARFRGTA-DDLAKAWGYIFGEWLPASGYEPRDRPILERYLNFP---AEDPEHEIEV 147 (154)
T ss_pred -----CCCCCceeEeeecCCceEEEEEeccH-HHHHHHHHHHHhhhccccCcccCCCchHHHHhccC---CCCcceeEEE
Confidence 23577899999999999999999976 33444445567888999999999888888885552 3445555554
Q ss_pred Ee
Q 016453 381 WL 382 (389)
Q Consensus 381 ~v 382 (389)
+|
T Consensus 148 di 149 (154)
T COG3449 148 DI 149 (154)
T ss_pred EE
Confidence 43
No 18
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=94.65 E-value=0.0032 Score=64.24 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=96.7
Q ss_pred chhhhhhhhccc----ccCCCCCCCccC--HHHHHHHHHhhccccccCCCccccccCCceEEeCCCCcccChHHHHHHHH
Q 016453 48 NQNLKWAVRLSL----VDQSSPPQSTVD--VEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNIS 121 (389)
Q Consensus 48 ~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~L~~dy~~lf~~~~~~~~iY~~dv~F~DP~~~~~Gl~~y~~~~~ 121 (389)
.+.-|.|.+-+. |+.+ .-.+++| +..+++.|+...+.|+. ....-++|+.+|.|.|+.+.+.+|..|+.|+.
T Consensus 42 s~~kk~aleetk~~ttQsla-svaYqIN~la~~~l~mL~lQ~~~L~~-mEs~vn~isq~V~ihkekvArreIg~lttnk~ 119 (483)
T KOG2546|consen 42 SADKKAALEETKAYTTQSLA-SVAYQINTLAGHALRMLDLQAPQLRY-MESQVNHISQTVDIHKEKVARREIGNLTTNKG 119 (483)
T ss_pred cccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhheecchhhhhhhccceeeccc
Confidence 445555555442 2222 3338888 89999999999999988 55677999999999999999999999999887
Q ss_pred HHh---hhc--ccEEEEEEeEEcCCcEEEEEEEEEEEecCCCCCCcEEEEEEEEEEEeCCCC
Q 016453 122 MLK---MVF--RPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETG 178 (389)
Q Consensus 122 ~L~---~~~--~~~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~S~l~~~~~~G 178 (389)
.++ .++ .+...+.-+++.= +..+++|+-||. +.+|..+-.++|+++..|+.. |
T Consensus 120 ~~r~hkiIap~nl~~~iryvrkPi-d~~mLd~igHGI--r~~~~~rg~~~g~~t~~l~rs-~ 177 (483)
T KOG2546|consen 120 LSRQHKIIAPANLEVPIRYVRKPI-DYSMLDDIGHGI--RGSWETRGRFDGTSTGKLSRS-G 177 (483)
T ss_pred cccccceeccccCCCCccceeccc-cceeeecccccc--ccccccccCcCcccccccCCC-C
Confidence 664 222 3445555666655 689999999998 668999999999999999965 5
No 19
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=93.14 E-value=1.2 Score=36.37 Aligned_cols=80 Identities=8% Similarity=-0.037 Sum_probs=53.3
Q ss_pred ccccccCCceEEeCCCC--cccChHHHHHHHHHHh-hhcccEEEEEEeE--EcCCcEEEEEEEEEEEecCCCCCCcEEEE
Q 016453 92 IDRTAYDEQVKFRDPIT--KHDTISGYLFNISMLK-MVFRPAFQLHWVK--QTGPYEITTRWTMVMKFMPLPWKPELVFT 166 (389)
Q Consensus 92 ~~~~iY~~dv~F~DP~~--~~~Gl~~y~~~~~~L~-~~~~~~f~v~~~~--~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~ 166 (389)
...++|++|+.+.+|.. .+.|.++++.+++... ..-...+++.++. ..+ +.+.+.+.+++... .-+......
T Consensus 19 ~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~a~~~~~~~~~~~--~~~~~~~~~ 95 (121)
T PF13474_consen 19 ALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSG-DVAVVTGEFRLRFR--NDGEEIEMR 95 (121)
T ss_dssp HHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEET-TEEEEEEEEEEEEE--CTTCEEEEE
T ss_pred HHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECC-CEEEEEEEEEEEEe--cCCccceee
Confidence 37899999999998664 5679999999988653 3444556555543 344 88888888877763 334444454
Q ss_pred EEEEEEEe
Q 016453 167 GTSVMGIN 174 (389)
Q Consensus 167 G~S~l~~~ 174 (389)
|..++.|-
T Consensus 96 ~r~t~v~~ 103 (121)
T PF13474_consen 96 GRATFVFR 103 (121)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 44444443
No 20
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.41 E-value=0.63 Score=40.16 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=67.0
Q ss_pred HHHHHHHhhccccccCCCccccccCCceEEeC-CCCcccChHHHHHHHH-HHhhhcccEEEEEEeEEcCCcEEEEEEEEE
Q 016453 74 WLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRD-PITKHDTISGYLFNIS-MLKMVFRPAFQLHWVKQTGPYEITTRWTMV 151 (389)
Q Consensus 74 ~~~~~L~~dy~~lf~~~~~~~~iY~~dv~F~D-P~~~~~Gl~~y~~~~~-~L~~~~~~~f~v~~~~~~~~~~i~~rW~m~ 151 (389)
++++.|.+-+++...+. ....+..+|-++.+ |+.+++|.+.-...+. .+.....-.|+|+.+...| +.+.. =|.-
T Consensus 10 ~~V~aF~aA~~~~d~~~-avr~~~~~d~v~~n~gis~i~G~~~~ia~l~~~~~~~~~~ef~I~riAadg-~~Vlt-ER~D 86 (130)
T COG4308 10 RTVEAFLAALQEDDGDA-AVRRLGTPDTVYNNVGISTIHGPAETIALLRPRMAGILGFEFKILRIAADG-GAVLT-ERLD 86 (130)
T ss_pred HHHHHHHHHHHhcCccH-HHHHhcCCCeeeccCCcccccchhhhhhhhccccCCcceeEEEEEEEeccc-ceehh-hhhh
Confidence 35556666666554422 46677877777775 5679999997666544 3334445689999987766 43322 2222
Q ss_pred EEecCCCCCCc-EEEEEEEEEEEeCCCCceEEeeeeeccCC
Q 016453 152 MKFMPLPWKPE-LVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (389)
Q Consensus 152 ~~~~~Lpw~~~-i~v~G~S~l~~~~~~GkI~~H~DyWD~~~ 191 (389)
.+ .-++. ..+.-|-.+.+. + |||+.-|||+|+..
T Consensus 87 -~~---~~g~~~~~~~V~GvfEV~-~-~rI~~WRDYFDv~~ 121 (130)
T COG4308 87 -AR---IDGPLWVQFWVCGVFEVE-D-GRIVLWRDYFDVND 121 (130)
T ss_pred -hh---ccCCcEEEEEEEEEEEEe-C-CEEEeehhhhhHHH
Confidence 11 11221 234445556666 3 89999999999866
No 21
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=91.32 E-value=1.4 Score=38.92 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=54.3
Q ss_pred CeeEEEeCCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCcccCceEEEEEcCCCCCCCCCceeeEEEEec
Q 016453 311 TLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDPGQTWSFIMRNEVLIWLE 383 (389)
Q Consensus 311 ~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~Gl~~~~~~~~A~Yd~P~~t~~~~RrNEV~i~v~ 383 (389)
+|.|++.|+..++.++..|...+ .+.+.-.+|.+++.++|+... .++...||.|.-+++..-|=+|.|-+.
T Consensus 2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~~~-~~~~i~~D~p~~~~~~~~R~d~~i~v~ 72 (156)
T PRK10016 2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIVPK-EWVAVYYDNPDEVPAEKLRCDTVVTVP 72 (156)
T ss_pred ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCCCC-cEEEEECCCCCCCChHHceeeEEEEeC
Confidence 58999999999999999998753 477888999999999999864 478888999944444443444544443
No 22
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=91.05 E-value=1.9 Score=33.99 Aligned_cols=80 Identities=11% Similarity=-0.058 Sum_probs=51.9
Q ss_pred ccccccCCceEEeCCCCcccChHHHHHHHHHHh-hhcccEEEEEEeEEcCCcEEEEEEEEEEEecCCCCCCcEEEEEEEE
Q 016453 92 IDRTAYDEQVKFRDPITKHDTISGYLFNISMLK-MVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSV 170 (389)
Q Consensus 92 ~~~~iY~~dv~F~DP~~~~~Gl~~y~~~~~~L~-~~~~~~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~S~ 170 (389)
...++|+||+.|..|.....|.+++...+..-. .....+++..++...+ +.+.+.=+.+... .- .+..+.+.|...
T Consensus 19 ~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~g-d~a~~~~~~~~~~-~~-~g~~~~~~~~~~ 95 (107)
T PF14534_consen 19 ALASLYADDFVFVGPGGTILGKEAILAAFKSGFARFSSIKFEDVEVRVLG-DTAVVRGRWTFTW-RG-DGEPVTIRGRFT 95 (107)
T ss_dssp HHHTTEEEEEEEEETTSEEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEET-TEEEEEEEEEEEE-TT-TTEEEEEEEEEE
T ss_pred HHHhhhCCCEEEECCCCCEeCHHHHHHHHhhccCCCceEEEEEEEEEEEC-CEEEEEEEEEEEE-ec-CCceEEEEEEEE
Confidence 378999999999999998889888877665421 1123455556666666 6665554444444 21 345566777666
Q ss_pred EEEe
Q 016453 171 MGIN 174 (389)
Q Consensus 171 l~~~ 174 (389)
..+-
T Consensus 96 ~v~~ 99 (107)
T PF14534_consen 96 SVWK 99 (107)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 23
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=88.65 E-value=1.2 Score=38.71 Aligned_cols=90 Identities=13% Similarity=0.196 Sum_probs=64.8
Q ss_pred cCCceEEeCCCCcccChHHHHHHHHHHhhhc-ccEEEEEEeEEcCCcEEEEEEEEEEEecC----C-CCCCcEEEEEEEE
Q 016453 97 YDEQVKFRDPITKHDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEITTRWTMVMKFMP----L-PWKPELVFTGTSV 170 (389)
Q Consensus 97 Y~~dv~F~DP~~~~~Gl~~y~~~~~~L~~~~-~~~f~v~~~~~~~~~~i~~rW~m~~~~~~----L-pw~~~i~v~G~S~ 170 (389)
+-+|+++-. +...|+++|..++-..+.-+ +-+|++..+...+ +.+..|=+|.|.++. + |-|+++.+.-.--
T Consensus 30 fv~~~v~~n--g~~~glsgyr~ml~~df~aiPdl~f~ie~lvae~-~~vaarl~Fdctp~G~i~Gip~nGkrV~Fse~vf 106 (131)
T COG5485 30 FVDGNVMHN--GRLQGLSGYREMLVRDFSAIPDLSFEIERLVAEG-DRVAARLTFDCTPSGEIMGIPPNGKRVRFSENVF 106 (131)
T ss_pred CCcCeeeeC--CceechHHHHHHHHhhHhhCCCcceEEEEEeecC-CceEEEEEEccCcCceEeccCCCCcEEEeehhhh
Confidence 445555542 46789999999877666444 7899998887766 889999999987743 2 4566677666666
Q ss_pred EEEeCCCCceEEeeeeeccCC
Q 016453 171 MGINPETGKFCSHLDLWDSIK 191 (389)
Q Consensus 171 l~~~~~~GkI~~H~DyWD~~~ 191 (389)
|.|- + |||++|.-..|..+
T Consensus 107 y~f~-~-~KI~~vwsv~Dk~a 125 (131)
T COG5485 107 YEFE-N-GKIVEVWSVIDKMA 125 (131)
T ss_pred hhhc-C-CeEEeeehhccHHH
Confidence 6665 4 89999977666654
No 24
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=87.56 E-value=15 Score=30.60 Aligned_cols=124 Identities=12% Similarity=0.092 Sum_probs=72.4
Q ss_pred cchhHHHhhhcccCCCCCCCCCCCCCcEEEEee--cCC--C--cEEEEEEEecCCCCCCCCCCCCCCCeeEEEeCCeEEE
Q 016453 250 GSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAY--DNE--L--KKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAA 323 (389)
Q Consensus 250 ~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~--~~~--~--~~~tmsF~lP~~~~~~~~P~P~d~~V~i~~~p~~~va 323 (389)
....|.+|..++...+....... .+++.-.. +.. . -++.+++.++... .. ...+.+...|++.++
T Consensus 26 i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~---~~----~~~~~~~~~p~~~y~ 96 (158)
T smart00871 26 IPELWQRLIAWAKELGLLPIGPS--GPPYGVYYDDPDDTPEGEFRYDAGVEVSDEV---EN----PEGVETKEIPAGKYA 96 (158)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCC--ccEEEEECCCCCCCChhHeEEEEEEEeCCCC---CC----CCCceEEEECCCcEE
Confidence 45678888888754433221111 23333221 111 1 2455555555431 11 235889999999999
Q ss_pred EEEecCCCChHHHHHHHHHHHHHHHhCCCccc---CceEEEEEcCCCCCCCCCceeeEEEEec
Q 016453 324 VLKFSGKPTEDIVHEKEKELHTSLIRDGLRPK---IGCLLARYNDPGQTWSFIMRNEVLIWLE 383 (389)
Q Consensus 324 V~~F~G~~te~~~~~~~~~L~~~L~~~Gl~~~---~~~~~A~Yd~P~~t~~~~RrNEV~i~v~ 383 (389)
+..|.|. ..+.+.+...+|..++..+|.... +..+---++.|..+.+....=|++|+|+
T Consensus 97 ~~~~~g~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~E~y~~~~~~~~~~~~~~ei~ipv~ 158 (158)
T smart00871 97 VFTHKGG-SYDEIQETWEAIYGEWLPNSGYELRDAGPDFEIYLNDPADTDPEELVTEIYIPIK 158 (158)
T ss_pred EEEEcCC-CHHHHHHHHHHHHHhhcccCCCccCcCCceEEEEeCCCCCCChhHeEEEEEEEcC
Confidence 9999993 467788999999999888875432 3222233444421223345778998874
No 25
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=85.25 E-value=6.6 Score=35.33 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=82.7
Q ss_pred EEEEecCcEEEEecc---CCcccchhHHHhhhcccCCCCCCCCCCCCCcEEEEee--c--CCCcEEEEEEEecCCCCCCC
Q 016453 231 EVRRYSPFIVVETNG---DKLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAY--D--NELKKVSIQIVLPQDKDMSS 303 (389)
Q Consensus 231 EiR~Y~~~~~a~t~~---~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~--~--~~~~~~tmsF~lP~~~~~~~ 303 (389)
.+...++..++.... ........++.|.++.+-++ .+.++ |+..... + +..-..-+++++-...
T Consensus 6 ~~~~~~~~~v~~ir~~~~~~~~~~~~~~el~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~s~~i~~~~---- 76 (153)
T COG4978 6 VIKKLEEIKVVGIRFTGIPERLIEQVYSELCNFLKSNG----IIPIG-PYGATIFHEPLKEEDVDIEVSIPISGEV---- 76 (153)
T ss_pred EEEeecceeEEEEEEecCcHHHHHHHHHHHHHHHhhcC----ccccC-CceEEEEeeeecccccccceeEEEEEec----
Confidence 455666666654432 22345567777777775332 11222 3332221 1 0001123344432221
Q ss_pred CCCCCCCCeeEEEeCCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCcccCceEEEEEcCCC-CCCCCCceeeEEEEe
Q 016453 304 LPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDPG-QTWSFIMRNEVLIWL 382 (389)
Q Consensus 304 ~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~Gl~~~~~~~~A~Yd~P~-~t~~~~RrNEV~i~v 382 (389)
+ .|+++.+...|+++++...|.|... .+.+.-++|.++++++|++..|..+=.--.+|. -..+..=.-||+|++
T Consensus 77 -~--~~~~~~~~~~P~g~~a~~~~~G~~~--~~~~~y~rli~~iee~g~~i~g~~~E~y~~d~~~~~~~~e~~tei~i~v 151 (153)
T COG4978 77 -E--GDIDIKIKTLPKGKYACIIHKGSYE--EVEQAYKRLIEYIEENGLEIIGPSREVYLIDPATEVNPEEYLTEIQIPV 151 (153)
T ss_pred -C--CCCcceeEEccCceEEEEEEEcCcc--cHHHHHHHHHHHHHHhCCcccCceEEEEecCCccccChhHeEEEEEEEe
Confidence 1 6889999999999999999999874 477888999999999999998864433344442 112234567888777
Q ss_pred c
Q 016453 383 E 383 (389)
Q Consensus 383 ~ 383 (389)
+
T Consensus 152 ~ 152 (153)
T COG4978 152 K 152 (153)
T ss_pred e
Confidence 5
No 26
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=84.14 E-value=15 Score=32.99 Aligned_cols=96 Identities=10% Similarity=0.027 Sum_probs=62.1
Q ss_pred cccccCCceEEeCCCC------cccChHHHHHHHHHHhhhc-c-cEEEEEEeEEcCCcEEEEEEEEEEEecCCCCCCcEE
Q 016453 93 DRTAYDEQVKFRDPIT------KHDTISGYLFNISMLKMVF-R-PAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELV 164 (389)
Q Consensus 93 ~~~iY~~dv~F~DP~~------~~~Gl~~y~~~~~~L~~~~-~-~~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~ 164 (389)
-.++|++|=.=--..+ -++|.+++.+....+-.+| + -+..|.-...++++.+.+.=.=+++. .+|+-|+..
T Consensus 38 Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcFPDWeW~nv~ifeT~DP~~fwVEcdG~G~i-~fpGypeg~ 116 (162)
T PF03284_consen 38 RHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCFPDWEWYNVRIFETQDPNHFWVECDGRGKI-LFPGYPEGY 116 (162)
T ss_dssp GGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHSTT-EEEEEEEEEBSSTTEEEEEEEEEEEE---TTS--EE
T ss_pred hheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHCCCcEEEEEEeecccCCCEEEEEecCccce-ecCCCCccc
Confidence 4467777765544443 4789999998655555555 3 24444444446678999999999987 788888776
Q ss_pred EEEEE--EEEEeCCCCceEEeeeeeccCC
Q 016453 165 FTGTS--VMGINPETGKFCSHLDLWDSIK 191 (389)
Q Consensus 165 v~G~S--~l~~~~~~GkI~~H~DyWD~~~ 191 (389)
++-.= -+.|+ + |||...|+|.+..+
T Consensus 117 y~NHfiHsFel~-n-GkI~~~REFmNp~q 143 (162)
T PF03284_consen 117 YENHFIHSFELE-N-GKIKRNREFMNPFQ 143 (162)
T ss_dssp EEEEEEEEEEEE-T-TEEEEEEEEE-HHH
T ss_pred ceeeeEEEEEee-C-CEEEeehhhcCHHH
Confidence 65433 34555 3 99999999987766
No 27
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=83.10 E-value=3.6 Score=34.47 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=48.8
Q ss_pred CeeEEEeCCeEEEEEEecCCCChHH-HHHHHHHHHHHHHhCCCc-ccCceEEEEEcCCC
Q 016453 311 TLDLRKVEGGIAAVLKFSGKPTEDI-VHEKEKELHTSLIRDGLR-PKIGCLLARYNDPG 367 (389)
Q Consensus 311 ~V~i~~~p~~~vaV~~F~G~~te~~-~~~~~~~L~~~L~~~Gl~-~~~~~~~A~Yd~P~ 367 (389)
+|.|++.|+.+++..+..|...+.. +.+...+|.+++.+.++. ....++..-||.|.
T Consensus 2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 60 (155)
T PF06445_consen 2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLSTDPGPIIGIYYDNPN 60 (155)
T ss_dssp CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCSSSSEEEEEEECCT
T ss_pred CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcccCCCcceeEEecccc
Confidence 5899999999999999999988877 899999999999999876 44567777788773
No 28
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=81.61 E-value=15 Score=30.04 Aligned_cols=80 Identities=13% Similarity=-0.027 Sum_probs=53.7
Q ss_pred HHHHHHHhhccccccCCC--ccccccCCceEEeCCC---CcccChHHHHHHHHHHhhhc-c-cEEEE-EEeEEcCCcEEE
Q 016453 74 WLVGFLYDDLPHLFDDQG--IDRTAYDEQVKFRDPI---TKHDTISGYLFNISMLKMVF-R-PAFQL-HWVKQTGPYEIT 145 (389)
Q Consensus 74 ~~~~~L~~dy~~lf~~~~--~~~~iY~~dv~F~DP~---~~~~Gl~~y~~~~~~L~~~~-~-~~f~v-~~~~~~~~~~i~ 145 (389)
+.|+.|...|........ ...++|++|++|.=+- ..+.|++++...+.....-. . .++.. ..+...+ +.+.
T Consensus 7 ~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dg-d~A~ 85 (127)
T PF13577_consen 7 AAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDG-DTAT 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcC-CEEE
Confidence 356666667776666554 4889999999997663 58999999999887653211 1 11111 1222355 7899
Q ss_pred EEEEEEEEe
Q 016453 146 TRWTMVMKF 154 (389)
Q Consensus 146 ~rW~m~~~~ 154 (389)
++|.+...+
T Consensus 86 ~~~~~~~~~ 94 (127)
T PF13577_consen 86 VRSYVLATH 94 (127)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999999886
No 29
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=81.42 E-value=10 Score=34.29 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=56.3
Q ss_pred CeeEEEeCCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCcccC-ceEEEEEcCCCCCCCCCceeeEEEEe
Q 016453 311 TLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKI-GCLLARYNDPGQTWSFIMRNEVLIWL 382 (389)
Q Consensus 311 ~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~Gl~~~~-~~~~A~Yd~P~~t~~~~RrNEV~i~v 382 (389)
+|.|++.|+..||..+-.| .+..+.+-..+|.+|.+++|+-+.. .....-||+|--|++..=|=-+.+-+
T Consensus 2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p~~S~~~gI~~ddP~~Tp~e~~R~D~cv~v 72 (154)
T COG3449 2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLPEQSETLGIYQDDPDTTPAEKCRYDACVVV 72 (154)
T ss_pred CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCCCCHHHceeeEEEEc
Confidence 6899999999999999999 7889999999999999999998874 56677789995455554444444444
No 30
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.09 E-value=17 Score=31.37 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=41.7
Q ss_pred ccChHHHHHHHHHHhhhc-ccEEEEEEeEEcCCcEEEEEEEEEEEecCCCCCCcEEEEEEEEEEEeCCCCceEEeeeeec
Q 016453 110 HDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWD 188 (389)
Q Consensus 110 ~~Gl~~y~~~~~~L~~~~-~~~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~S~l~~~~~~GkI~~H~DyWD 188 (389)
=.|.+++.++|..++... ..+..|......| +-+++.---.. .-|+ .-...-+-++++++ |||++| ||
T Consensus 43 pdGk~~fv~fFt~ffk~~P~~~~kiVr~iadG-dLV~vh~hqt~---~~pg--~~~~v~~DtfR~dd--gkivEH---WD 111 (129)
T COG4922 43 PDGKDGFVRFFTEFFKEKPRISTKIVRVIADG-DLVTVHYHQTV---SEPG--SYTTVTFDTFRIDD--GKIVEH---WD 111 (129)
T ss_pred CCchHHHHHHHHHHHHhCccccceeeEEeccC-CEEEEEEeeee---CCCC--cceeEEEEEEEeeC--Cceeec---cc
Confidence 469999999988664222 3445555555566 66655422211 1121 12344466788884 899887 66
Q ss_pred cCC
Q 016453 189 SIK 191 (389)
Q Consensus 189 ~~~ 191 (389)
...
T Consensus 112 viq 114 (129)
T COG4922 112 VIQ 114 (129)
T ss_pred hhh
Confidence 665
No 31
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=75.00 E-value=11 Score=31.00 Aligned_cols=77 Identities=10% Similarity=-0.049 Sum_probs=50.8
Q ss_pred HHHHhhcccccc-CCCccccccCCceEEeCCCCc--ccChHHHHHHHHHHhhhcccEEEEEEeEEc--CCcEEEEEEEEE
Q 016453 77 GFLYDDLPHLFD-DQGIDRTAYDEQVKFRDPITK--HDTISGYLFNISMLKMVFRPAFQLHWVKQT--GPYEITTRWTMV 151 (389)
Q Consensus 77 ~~L~~dy~~lf~-~~~~~~~iY~~dv~F~DP~~~--~~Gl~~y~~~~~~L~~~~~~~f~v~~~~~~--~~~~i~~rW~m~ 151 (389)
.+++.-|..+.. +...+..+|++|..+.++... +.|.++..+.+..|-.-. +++.+..+..+ +.....+-+..+
T Consensus 4 ~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~~-~~~~i~~~d~qp~~~~~~~i~i~v~ 82 (118)
T PF02136_consen 4 SFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPATG-VQHRITSVDCQPSPSSDGSILITVT 82 (118)
T ss_dssp HHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTSS-EEEEEEEEEEEEEEECCSEEEEEEE
T ss_pred HHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCcc-cEEEecccccccccccCCcEEEEEE
Confidence 344444554444 233588999999999999887 899999998877774222 36777666544 223345566677
Q ss_pred EEe
Q 016453 152 MKF 154 (389)
Q Consensus 152 ~~~ 154 (389)
|..
T Consensus 83 G~~ 85 (118)
T PF02136_consen 83 GQF 85 (118)
T ss_dssp EEE
T ss_pred eEE
Confidence 766
No 32
>COG3708 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.24 E-value=50 Score=29.79 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=61.3
Q ss_pred cEEEEEEEecCCCCCCCCCCCCCCCeeEEEeCCeEEEEEEecCCCChHHHHHH-HHHHHHHHHhCCCcccCceEEEEEcC
Q 016453 287 KKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEK-EKELHTSLIRDGLRPKIGCLLARYND 365 (389)
Q Consensus 287 ~~~tmsF~lP~~~~~~~~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~-~~~L~~~L~~~Gl~~~~~~~~A~Yd~ 365 (389)
++++-...+.-... ..+|++ ....++|+.++||-...|...+ +++. -.....++.+.+.+..+...+=.||.
T Consensus 66 g~~~y~i~~ev~~~-~~~pe~----~~~i~iPa~~YavFt~~G~~~~--i~etw~~I~~~~~~~~~~~~~~~~~fE~Yd~ 138 (157)
T COG3708 66 GEFDYYIGVEVEDF-EDLPEG----MEVIEIPASTYAVFTHKGPIEE--IQETWQEIWKEWFPSSGYRHAEGPEFEVYDE 138 (157)
T ss_pred CCEEEEEEEEeecc-ccCCCC----ceEEEeccceEEEEEecCCHHH--HHHHHHHHHHhhcccccccccCCCceEEecC
Confidence 44554444444322 455654 6788999999999999998866 5554 44566668888988776557778866
Q ss_pred CCCCCCCCceeeEEEEecc
Q 016453 366 PGQTWSFIMRNEVLIWLEE 384 (389)
Q Consensus 366 P~~t~~~~RrNEV~i~v~~ 384 (389)
= -.-.-+=.=||||+|..
T Consensus 139 ~-~~~~~~~~veIyIpV~k 156 (157)
T COG3708 139 R-DPDSGNGKVEIYIPVKK 156 (157)
T ss_pred C-CCCCCCceEEEEEEEec
Confidence 3 11244678899999864
No 33
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=64.11 E-value=25 Score=34.19 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=47.4
Q ss_pred eEEEeCCeEEEEEEecCCCChHHHHHHHHH-HHHHHHhCCCcccCceEEEEEc----CCCCCCCCCceeeEEEEec
Q 016453 313 DLRKVEGGIAAVLKFSGKPTEDIVHEKEKE-LHTSLIRDGLRPKIGCLLARYN----DPGQTWSFIMRNEVLIWLE 383 (389)
Q Consensus 313 ~i~~~p~~~vaV~~F~G~~te~~~~~~~~~-L~~~L~~~Gl~~~~~~~~A~Yd----~P~~t~~~~RrNEV~i~v~ 383 (389)
....+|++++||..|.|...+ +.+-... +.+||-+.|+...+.+-+-.|. +|..+..-.-.=||||||+
T Consensus 215 ~~~~Ip~G~YAvF~~~G~~~~--l~~~~~~Iy~~WLP~sg~~~~~~p~~e~y~~~~~~~~~~~~~~~~~ei~iPi~ 288 (289)
T PRK15121 215 HPVMLQGGEYVMFTYEGLGTG--LQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEYLIPIR 288 (289)
T ss_pred ceEeeCCCCEEEEEEeCCHHH--HHHHHHHHHHHHCCCCCccccCCCCEEEEecccCccccCCCceEEEEEEEEec
Confidence 678889999999999999743 5555555 5689999999887755555553 3311222233349999986
No 34
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=62.45 E-value=47 Score=32.34 Aligned_cols=77 Identities=10% Similarity=-0.027 Sum_probs=45.2
Q ss_pred ccccccCCceEEe-CCC-------CcccChHHHHHHHHHHhhhccc--EEEEEEeEEcCCcEEEEEEEEEEEecCCCCCC
Q 016453 92 IDRTAYDEQVKFR-DPI-------TKHDTISGYLFNISMLKMVFRP--AFQLHWVKQTGPYEITTRWTMVMKFMPLPWKP 161 (389)
Q Consensus 92 ~~~~iY~~dv~F~-DP~-------~~~~Gl~~y~~~~~~L~~~~~~--~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~ 161 (389)
-+.++++|||+|. |.- ..+.|.+...+.|..+...+.+ .+.+.-+...| +.+.+. ...+.
T Consensus 191 ~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~~~~~~~~~~~~vnG-~~a~~~-~~~~~-------- 260 (293)
T PRK09636 191 ALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYGPGGSTLVRLALVNG-LPGFVT-AEADG-------- 260 (293)
T ss_pred HHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhccCCCceEEEEEEECC-ceeEEE-EeCCc--------
Confidence 3889999999999 542 4578999988888776544433 23333333455 333322 22211
Q ss_pred cEEEEEEEEEEEeCCCCceEEe
Q 016453 162 ELVFTGTSVMGINPETGKFCSH 183 (389)
Q Consensus 162 ~i~v~G~S~l~~~~~~GkI~~H 183 (389)
..++..+.++ + |||..=
T Consensus 261 ---~~~~~~~~~~-~-g~I~~i 277 (293)
T PRK09636 261 ---EPQTTALEVE-D-GKIVAI 277 (293)
T ss_pred ---eEEEEEEEEE-C-CEEEEE
Confidence 1345555665 4 888763
No 35
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=62.04 E-value=47 Score=27.61 Aligned_cols=55 Identities=22% Similarity=0.152 Sum_probs=44.3
Q ss_pred eeEEEeCCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCccc---CceEEEEEcCC
Q 016453 312 LDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPK---IGCLLARYNDP 366 (389)
Q Consensus 312 V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~Gl~~~---~~~~~A~Yd~P 366 (389)
+.|...|+.+++..++.|...+..+.+...+|.+++...++... +..+..-|+.|
T Consensus 2 ~~i~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (158)
T smart00871 2 VRIVELPAFKVAGLRHRGPYEEEKIPELWQRLIAWAKELGLLPIGPSGPPYGVYYDDP 59 (158)
T ss_pred CEEEEcCCceEEEEEeecCcccccHHHHHHHHHHHHHHcCCCCCCCCccEEEEECCCC
Confidence 67899999999999999998765678888889999988886543 35677777777
No 36
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=57.36 E-value=1.1e+02 Score=26.25 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=55.3
Q ss_pred CCCCCCccCHHHHHHHHHhhccccccCCCccccccCCce---EEeC-CCCcccChHHHHHHHHHHhhhcccEEEEEEeEE
Q 016453 63 SSPPQSTVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQV---KFRD-PITKHDTISGYLFNISMLKMVFRPAFQLHWVKQ 138 (389)
Q Consensus 63 ~~~~~~~~~~~~~~~~L~~dy~~lf~~~~~~~~iY~~dv---~F~D-P~~~~~Gl~~y~~~~~~L~~~~~~~f~v~~~~~ 138 (389)
|.+....++..++.+.+++++..++.+.. -.....+|. -|.| +++.-.....+.+.+...-.-++||+...+|..
T Consensus 14 ~~~~~~~~~~~~l~~sI~~~L~~LLnTr~-g~~~~~~~yGl~d~~~~~~~~~~~~~~i~~~I~~aI~r~EPRl~~~~V~~ 92 (133)
T TIGR03357 14 ESPSTRRSSAEQLRESIRRHLERLLNTRR-GSCASLPDYGLPDLNDLSLSSADDRRRIRRAIEQAIERYEPRLSSVRVTA 92 (133)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHccCC-CccccccccCCcccccccccCHHHHHHHHHHHHHHHHhcCCCcCceEEEE
Confidence 33445677889999999999999988542 111122222 3333 333323333444444444455689988877765
Q ss_pred cC--CcEEEEEEEEEEEec
Q 016453 139 TG--PYEITTRWTMVMKFM 155 (389)
Q Consensus 139 ~~--~~~i~~rW~m~~~~~ 155 (389)
.. .....+++.+.+.++
T Consensus 93 ~~~~~~~~~l~f~I~~~l~ 111 (133)
T TIGR03357 93 LEDEEDPLALRFRIEAELD 111 (133)
T ss_pred ecCCCCccEEEEEEEEEEE
Confidence 32 245688888888873
No 37
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=40.47 E-value=1.2e+02 Score=27.27 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=45.0
Q ss_pred CCeeEEEeCCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCcccCceEEEEEcCC
Q 016453 310 ETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDP 366 (389)
Q Consensus 310 ~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~Gl~~~~~~~~A~Yd~P 366 (389)
-+|.+.++++..++.+++-|. .+..+.+-..+|.+.+...|..+.+.+..-.|-.|
T Consensus 3 ~e~~~~~~~~~~v~~ir~~~~-~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 58 (153)
T COG4978 3 VEVVIKKLEEIKVVGIRFTGI-PERLIEQVYSELCNFLKSNGIIPIGPYGATIFHEP 58 (153)
T ss_pred cccEEEeecceeEEEEEEecC-cHHHHHHHHHHHHHHHhhcCccccCCceEEEEeee
Confidence 357899999999999999998 78899999999999999999777664433333333
No 38
>PHA00159 endonuclease I
Probab=36.90 E-value=54 Score=29.23 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCcccCceEEEEE----cCCCCCCCCCceeeEEEEeccc
Q 016453 340 EKELHTSLIRDGLRPKIGCLLARY----NDPGQTWSFIMRNEVLIWLEEF 385 (389)
Q Consensus 340 ~~~L~~~L~~~Gl~~~~~~~~A~Y----d~P~~t~~~~RrNEV~i~v~~~ 385 (389)
+.+-.+.|++.|+.+.=+.....| +.=..||.|.+.|.|+|+++++
T Consensus 20 E~k~ak~Le~~gv~~~yE~~ki~y~~pA~~~~YTPDF~LpnGiiiEvKG~ 69 (148)
T PHA00159 20 EDKVSKQLEKKGVKFDYELWKIPYVIPASDHKYTPDFLLPNGIIIETKGL 69 (148)
T ss_pred HHHHHHHHHhcCCCeEeeeeeeeeeccCCCCeeCCceecCCCCEEEeccc
Confidence 344667888999877644444444 3233688899999999999986
No 39
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=30.65 E-value=3.1e+02 Score=22.63 Aligned_cols=59 Identities=8% Similarity=0.054 Sum_probs=39.6
Q ss_pred HHHHhhccccccCCCccccccCCceEEeCCC-CcccChHHHHHHHHHHhhhcccEEEEEEe
Q 016453 77 GFLYDDLPHLFDDQGIDRTAYDEQVKFRDPI-TKHDTISGYLFNISMLKMVFRPAFQLHWV 136 (389)
Q Consensus 77 ~~L~~dy~~lf~~~~~~~~iY~~dv~F~DP~-~~~~Gl~~y~~~~~~L~~~~~~~f~v~~~ 136 (389)
.+++.-|..+..+...+..+|+++..|.=+- +.+.|.+++...+..|.. ..+..++..+
T Consensus 8 ~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l~~lp~-~~~~~~i~~~ 67 (119)
T cd00780 8 AFVQQYYSIFDNNREGLHRLYGDTSMLSREGMKQVTGRDAIVEKLSSLPF-QKTKHKITTV 67 (119)
T ss_pred HHHHHHHHHHhcCHHHHHhhcCCCcEEEECCceEecCHHHHHHHHHhCCC-cceEEEEEEE
Confidence 3445555555443335889999999999777 889999998887665531 1445555444
No 40
>PF14526 Cass2: Integron-associated effector binding protein; PDB: 3GK6_A.
Probab=28.61 E-value=3.6e+02 Score=22.75 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=54.9
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcEEEEeecCC--CcEEEEEEEecCCCCCCCCCCCCCCCeeEEEeCCeEEEEEEecC
Q 016453 252 TGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDNE--LKKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVLKFSG 329 (389)
Q Consensus 252 ~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~--~~~~tmsF~lP~~~~~~~~P~P~d~~V~i~~~p~~~vaV~~F~G 329 (389)
.-+.++++... ..++....+++.-..+.+ .+.+++..-+|-+-. ...|. .....++|+..+++..+.|
T Consensus 30 ~lw~~~~~~~~-----~~~~~~~~~~y~vy~~ye~~~~~~~~~vg~~v~~~-~~~~~----~~~~~~ip~~~Y~~~~~~G 99 (150)
T PF14526_consen 30 ELWQEFFKEGK-----LPNIKPDGPIYGVYHDYESYEGDYDYEVGVPVKED-DEVPE----GFVIIEIPAGKYAVFTVKG 99 (150)
T ss_dssp HHHHHHHHHT------GGG--TT--EEEEEE--SSTTS-EEEEEEESS--T-TTSTT-----EE-EEE--EEEEEEEEES
T ss_pred HHHHHHHHhch-----hhhcCCCCCEEEEEeccccCCCCeEEEEEEEecCC-ccCCC----CceEEEECCEeEEEEEEeC
Confidence 44555554431 222344467776654322 355666666665533 23333 4788899999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHh--CCCcccCceEEEEEcCCCCCCCCCceeeEEEEe
Q 016453 330 KPTEDIVHEKEKELHTSLIR--DGLRPKIGCLLARYNDPGQTWSFIMRNEVLIWL 382 (389)
Q Consensus 330 ~~te~~~~~~~~~L~~~L~~--~Gl~~~~~~~~A~Yd~P~~t~~~~RrNEV~i~v 382 (389)
-.. +.+.+.-.++-+++.+ .++.....+-+--|..-. +..-.=||+|+|
T Consensus 100 ~~~-~~i~~~w~~i~~~~~~~~~~~~r~~~~dfE~Y~~~~---~~~~~~eIyIpI 150 (150)
T PF14526_consen 100 PYP-EAIIEAWQKIWEWFEEENNDYERAYGPDFEVYPEDP---SENYEVEIYIPI 150 (150)
T ss_dssp STT-HHHHHHHHHHHHHH--------B--SEEEEE--SSS-------EEEEEEEB
T ss_pred CCh-HHHHHHHHHHHHHHHhhCCCceeccCCCeEEEcCCC---CceeEEEEEEEC
Confidence 765 3455555666666654 556665566677775542 224567888876
No 41
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=22.84 E-value=5.1e+02 Score=22.51 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=39.5
Q ss_pred cccccCCc-eEEeCCC--CcccChHHHHHHHHHHhhhc--ccEEEEEE--eEEcCCcEEEEEEEEEEEec
Q 016453 93 DRTAYDEQ-VKFRDPI--TKHDTISGYLFNISMLKMVF--RPAFQLHW--VKQTGPYEITTRWTMVMKFM 155 (389)
Q Consensus 93 ~~~iY~~d-v~F~DP~--~~~~Gl~~y~~~~~~L~~~~--~~~f~v~~--~~~~~~~~i~~rW~m~~~~~ 155 (389)
-..+|++| ..|.-.. +-+.|++..+.||.++-.-- ..+-.|.+ |..-|++.+.+.-.-.+.+.
T Consensus 24 ~~~ly~~d~av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~~~Ai~~gvy~f~~~ 93 (128)
T PF08332_consen 24 YAKLYAPDVAVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGDNAAIDAGVYTFQFV 93 (128)
T ss_dssp HHHHEEEEEEEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEESTTEEEEEEEEEEEEE
T ss_pred HhhhcCCCeeEeccccCCceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCCCEEEEeeEEEEEee
Confidence 67899999 5555444 25689999999999553111 12233333 33346578877777777763
No 42
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=22.74 E-value=34 Score=33.12 Aligned_cols=16 Identities=31% Similarity=0.655 Sum_probs=11.4
Q ss_pred EEeeeeeccCCCCCCc
Q 016453 181 CSHLDLWDSIKNNDYF 196 (389)
Q Consensus 181 ~~H~DyWD~~~~~~~f 196 (389)
.+|+||||--.=...|
T Consensus 76 syhVdYWdYlGWkDtl 91 (261)
T COG5429 76 SYHVDYWDYLGWKDTL 91 (261)
T ss_pred EEeecccccCCccccc
Confidence 5899999987633333
Done!