BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016454
(389 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P72991|FTSH3_SYNY3 ATP-dependent zinc metalloprotease FtsH 3 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH3 PE=1 SV=1
Length = 616
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 229 KRRILV--HEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGR 286
KR+ LV HEAGH L+ LM DP+ + + +G+AG W + + G
Sbjct: 415 KRKTLVAYHEAGHALVGALMPD------YDPVQKISIIPRGRAGGLTWFTPSEDRMESGL 468
Query: 287 LSGTAFDRYSMVLFAGIAAEALIYGEAE---GGEND 319
S + V G AE +I+GE E G ND
Sbjct: 469 YSRSYLQNQMAVALGGRIAEEIIFGEEEVTTGASND 504
>sp|Q67T82|FTSH2_SYMTH ATP-dependent zinc metalloprotease FtsH 2 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH2 PE=3 SV=1
Length = 587
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 23/102 (22%)
Query: 226 PPYKRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAG----TQFWDEKM--- 278
P KRR+ VHEAGH L+A L DP+ + + +G+AG T +++M
Sbjct: 407 PEEKRRVAVHEAGHALVATLTPGA------DPVQKVTIIPRGRAGGFTLTTPEEDQMLYT 460
Query: 279 NNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDE 320
+EL E RL +L G+AAE ++ GE G D+
Sbjct: 461 RSEL-EARLK---------MLLGGLAAEEVLLGERSTGAQDD 492
>sp|Q9FH02|FTSH5_ARATH ATP-dependent zinc metalloprotease FTSH 5, chloroplastic
OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1
Length = 704
Score = 38.5 bits (88), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 229 KRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLS 288
KR + HEAGH L+ LM DP+ + + +GQAG + L G S
Sbjct: 506 KRLVAYHEAGHALVGALMPE------YDPVAKISIIPRGQAGGLTFFAPSEERLESGLYS 559
Query: 289 GTAFDRYSMVLFAGIAAEALIYGE---AEGGEND 319
+ + V G AE +I+G+ G ND
Sbjct: 560 RSYLENQMAVALGGRVAEEVIFGDENVTTGASND 593
>sp|Q39102|FTSH1_ARATH ATP-dependent zinc metalloprotease FTSH 1, chloroplastic
OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2
Length = 716
Score = 38.5 bits (88), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 229 KRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLS 288
KR + HEAGH L+ LM DP+ + + +GQAG + L G S
Sbjct: 518 KRLVAYHEAGHALVGALMPE------YDPVAKISIIPRGQAGGLTFFAPSEERLESGLYS 571
Query: 289 GTAFDRYSMVLFAGIAAEALIYGE---AEGGEND 319
+ + V G AE +I+G+ G ND
Sbjct: 572 RSYLENQMAVALGGRVAEEVIFGDENVTTGASND 605
>sp|Q39444|FTSH_CAPAN ATP-dependent zinc metalloprotease FTSH, chloroplastic (Fragment)
OS=Capsicum annuum GN=FTSH PE=2 SV=1
Length = 662
Score = 38.5 bits (88), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 229 KRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLS 288
K+ + HEAGH L+ LM DP+ + + +GQAG + L G S
Sbjct: 486 KKLVAYHEAGHALVGALMPE------YDPVAKISIIPRGQAGGLTFFAPSEERLESGLYS 539
Query: 289 GTAFDRYSMVLFAGIAAEALIYGE---AEGGEND 319
+ + V G AE +I+GE G ND
Sbjct: 540 RSYLENQMAVALGGRVAEEVIFGEDNVTTGASND 573
>sp|A1TZE0|FTSH_MARAV ATP-dependent zinc metalloprotease FtsH OS=Marinobacter aquaeolei
(strain ATCC 700491 / DSM 11845 / VT8) GN=ftsH PE=3 SV=1
Length = 633
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 209 DAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLM--GCPIRGVILDPIVAMQMGIQ 266
D + LG AQ++ P + + HE GH ++AY M P+ + + P M MG+
Sbjct: 424 DRLILGEERDAQLT---PEEREAVAYHECGHAIMAYYMPKADPLTKITIIP-HGMAMGVT 479
Query: 267 GQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGE-AEGGEND 319
Q + +K N E L DR V+ G +AE +IYGE + G +ND
Sbjct: 480 EQTPKE---DKYN--YTESYLE----DRIK-VMLGGRSAEKIIYGEVSTGAQND 523
>sp|Q5Z974|FTSH1_ORYSJ ATP-dependent zinc metalloprotease FTSH 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=FTSH1 PE=2 SV=1
Length = 686
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 229 KRRILV-HEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRL 287
KRR++ HEAGH L+ LM DP+ + + +GQAG + L G
Sbjct: 487 KRRLVAYHEAGHALVGALMPE------YDPVAKISIIPRGQAGGLTFFAPSEERLESGLY 540
Query: 288 SGTAFDRYSMVLFAGIAAEALIYGE---AEGGEND 319
S + + V G AE +I+G+ G ND
Sbjct: 541 SRSYLENQMAVALGGRVAEEVIFGQENVTTGASND 575
>sp|Q60AK1|FTSH_METCA ATP-dependent zinc metalloprotease FtsH OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=ftsH PE=3
SV=1
Length = 637
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 229 KRRILVHEAGHLLIAYLM--GCPIRGVILDPIVAMQMGIQGQAGTQ----FWDEKMNNEL 282
K R+ VHE+GH L+A ++ G P+ V + P A +G Q + ++++ +++
Sbjct: 448 KHRVAVHESGHALVAEIVPTGQPVHKVSIIPRGAAALGFTLQLPVEEKFLSTEQELKDQI 507
Query: 283 AEGRLSGTAFDRYSMVLFAGIAAEALIYGE-AEGGENDENLFRSICVLLQPPLSMAQM 339
A +L G AE L++GE + G +ND I + L M+++
Sbjct: 508 A--------------ILLGGRTAEELVFGESSSGAQNDLEKASEIARTMVCSLGMSKV 551
>sp|Q2JNP0|FTSH_SYNJB ATP-dependent zinc metalloprotease FtsH OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=ftsH PE=3 SV=1
Length = 638
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 229 KRRILV--HEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGR 286
+R+ LV HEAGH L+ L+ DPI + + +GQAG W ++++ G
Sbjct: 423 RRKELVAYHEAGHALVGSLLPN------YDPIQKVTIIPRGQAGGLTWFMPSDDDM--GL 474
Query: 287 LSGTAFDRYSMVLFAGIAAEALIYGEAE 314
+ V G AE ++YGE+E
Sbjct: 475 TTRAHLKNMMTVALGGRVAEEVVYGESE 502
>sp|Q1D491|FTSH_MYXXD ATP-dependent zinc metalloprotease FtsH OS=Myxococcus xanthus
(strain DK 1622) GN=ftsH PE=3 SV=1
Length = 638
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 206 ALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLM-GCPIRGVILDPIVAMQMG 264
A D +F+G + I + K+ VHEAGH L+A L+ GC DP+ + +
Sbjct: 390 AAKDKVFMGPERRSMIMTE--KEKKNTAVHEAGHALLAKLLPGC-------DPLHKVTII 440
Query: 265 IQGQAGTQFW----DEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGEND 319
+GQA W ++K+N D+ SM + IA E + + G ND
Sbjct: 441 PRGQALGVTWSLPTEDKVNG------YKKQMLDQISMAMGGRIAEELMFNEMSSGAAND 493
>sp|B9L3S8|FTSH2_THERP ATP-dependent zinc metalloprotease FtsH 2 OS=Thermomicrobium roseum
(strain ATCC 27502 / DSM 5159 / P-2) GN=ftsH2 PE=3 SV=1
Length = 699
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 229 KRRILVHEAGHLLIAYLM--GCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGR 286
+R + HEAGH ++AY P+R + + P +G+ QA + N+L GR
Sbjct: 506 RRLVAYHEAGHAVVAYFTPGADPLRKISIVP-RGRALGVTVQAPEEDRFNYTRNQLL-GR 563
Query: 287 LSGTAFDRYSMVLFAGIAAEALIYGE-AEGGEND 319
L+ VL G AAE L++ E G +ND
Sbjct: 564 LA---------VLLGGRAAEQLVFHEVTTGAQND 588
>sp|D2QZ34|FTSH_PIRSD ATP-dependent zinc metalloprotease FtsH OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ftsH PE=3
SV=1
Length = 700
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 21/109 (19%)
Query: 229 KRRILVHEAGHLLIAYLM--GCPIRGVILDP--IVAMQMGIQGQAGTQFWDEKMNNELAE 284
K R+ HE+GH L+AY + P+ V + P + A+ +Q G +F M E
Sbjct: 478 KLRVAYHESGHALVAYSLPNTDPVHKVSIIPRGLAALGYTMQRPEGDRFL---MTQSELE 534
Query: 285 GRLSGTAFDRYSMVLFAGIAAEALIYGE-AEGGEND----ENLFRSICV 328
R+ VL AG AE +I+ + + G +ND ++ R +C+
Sbjct: 535 SRIQ---------VLLAGTIAEEIIFTDISTGAQNDLERATDIARRMCM 574
>sp|Q67LC0|FTSH1_SYMTH ATP-dependent zinc metalloprotease FtsH 1 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH1 PE=3 SV=1
Length = 594
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 235 HEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQA--GTQFWDEKMNNELAEGRLSGTAF 292
HEAGH L G +RG D +V + + G+ T F D+ L R AF
Sbjct: 408 HEAGH----ALAGLALRGS--DRLVRVTILPHGRGLGHTLFRDQDEERYLHTRR---DAF 458
Query: 293 DRYSMVLFAGIAAEALIYGEAEGGENDE 320
DR + L AG AAEAL+ GE G D+
Sbjct: 459 DRLTE-LLAGRAAEALVLGEVSAGAADD 485
>sp|O82150|FTSH_TOBAC ATP-dependent zinc metalloprotease FTSH, chloroplastic OS=Nicotiana
tabacum GN=FTSH PE=2 SV=2
Length = 714
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 229 KRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLS 288
K+ + HEAGH L+ LM DP+ + + +GQAG + L G S
Sbjct: 509 KKLVAYHEAGHALVGALMPE------YDPVAKISIIPRGQAGGLTFFAPSEERLESGLYS 562
Query: 289 GTAFDRYSMVLFAGIAAEALIYGE---AEGGEND 319
+ + V AE +I+G+ G ND
Sbjct: 563 RSYLENQMAVALGERVAEEVIFGQDNVTTGASND 596
>sp|P45219|FTSHL_HAEIN ATP-dependent zinc metalloprotease FtsH homolog OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_1465 PE=3 SV=1
Length = 381
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 20/106 (18%)
Query: 229 KRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQA-GTQFWDEKMNNELAEG-- 285
K HEAGH ++ YL P DP+ + + +G+A G F+ L EG
Sbjct: 153 KESTAYHEAGHAIVGYL--VPEH----DPVHKVTIIPRGRALGVTFF-------LPEGDQ 199
Query: 286 -RLSGTAFDRYSMVLFAGIAAEALIYGE---AEGGENDENLFRSIC 327
+S + L+AG AE LIYGE + G ND + +I
Sbjct: 200 ISISQKQLESKLSTLYAGRLAEDLIYGEENISTGASNDIKVATNIA 245
>sp|P71377|FTSH_HAEIN ATP-dependent zinc metalloprotease FtsH OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ftsH PE=3
SV=1
Length = 635
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 20/106 (18%)
Query: 229 KRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQA-GTQFWDEKMNNELAEG-- 285
K HEAGH ++ YL P DP+ + + +G+A G F+ L EG
Sbjct: 407 KESTAYHEAGHAIVGYL--VPEH----DPVHKVTIIPRGRALGVTFF-------LPEGDQ 453
Query: 286 -RLSGTAFDRYSMVLFAGIAAEALIYGE---AEGGENDENLFRSIC 327
+S + L+AG AE LIYGE + G ND + +I
Sbjct: 454 ISISQKQLESKLSTLYAGRLAEDLIYGEENISTGASNDIKVATNIA 499
>sp|B3DV46|FTSH1_METI4 ATP-dependent zinc metalloprotease FtsH 1 OS=Methylacidiphilum
infernorum (isolate V4) GN=ftsH1 PE=3 SV=1
Length = 636
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 229 KRRILVHEAGHLLIAYL--MGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGR 286
+ R+ HE GH L+A+ P+R + + P +G Q T +EL
Sbjct: 436 RERVAYHEVGHALVAFYSEHAEPVRKISIVPRGKSALGYTLQLPTAQKYLLSKSEL---- 491
Query: 287 LSGTAFDRYSMVLFAGIAAEALIYGE-AEGGENDENLFRSICVLLQPPLSMAQMSNQARW 345
DR V G AAE LIYG+ G END + +I + M + S A +
Sbjct: 492 -----LDRIC-VAMGGRAAEELIYGDITTGAENDLEVATTIARQMVCLYGMGEKSGLAHY 545
>sp|A0LN68|FTSH_SYNFM ATP-dependent zinc metalloprotease FtsH OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=ftsH PE=3 SV=1
Length = 647
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 226 PPYKRRILVHEAGHLLIAYLMGC--PIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELA 283
P K + HEAGH L+A L+ P+ V + P +G Q T+ NEL
Sbjct: 440 PKEKEIVAYHEAGHALVAMLLPNVDPVNKVSIIPRGIAALGYTQQLPTEDRYLMTRNEL- 498
Query: 284 EGRLSGTAFDRYSMVLFAGIAAEALIYGE-AEGGEND 319
DR VL G +E +I+G+ + G +ND
Sbjct: 499 --------LDRLQ-VLLGGRVSEEIIFGDVSTGAQND 526
>sp|Q9TJ83|FTSH_CYAME ATP-dependent zinc metalloprotease FtsH OS=Cyanidioschyzon merolae
GN=ftsH PE=3 SV=1
Length = 603
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 229 KRRILVHEAGHLLIAYLM--GCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGR 286
KR I HE GH L A L+ P++ V L P Q + T F + + L++ +
Sbjct: 409 KRLIAYHETGHALTATLLPNHPPVQKVTLIP------RRQAKGLTWFMQDNERDLLSKSQ 462
Query: 287 LSGTAFDRYSMVLFAGIAAEALIYGEAE---GGEND 319
L MV G AAE ++G AE G ND
Sbjct: 463 LMSMI-----MVALGGRAAEEAVFGNAEVTTGASND 493
>sp|C7M0M0|FTSH_ACIFD ATP-dependent zinc metalloprotease FtsH OS=Acidimicrobium
ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882
/ ICP) GN=ftsH PE=3 SV=1
Length = 660
Score = 32.0 bits (71), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 229 KRRILVHEAGHLLIAYLMGC--PIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGR 286
K R+ HE GH ++AY++ P+ V + P M +G+ TQ E+ +
Sbjct: 429 KERVAFHEGGHAVLAYVLDYSDPVHKVTILP-TGMALGV-----TQQLPERDRHLYPREY 482
Query: 287 LSGTAFDRYSMVLFAGIAAEALIYGE-AEGGEND 319
+ T +V G AE L+YG+ + G ND
Sbjct: 483 IEDTL-----VVRMGGRVAELLVYGDLSTGAAND 511
>sp|C8WEG0|FTSH_ZYMMN ATP-dependent zinc metalloprotease FtsH OS=Zymomonas mobilis subsp.
mobilis (strain NCIB 11163) GN=ftsH PE=3 SV=1
Length = 662
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 229 KRRILVHEAGHLLIA-YLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRL 287
KR HEAGH L++ ++ GC DP+ + + +G+A W+ ++L+ +
Sbjct: 435 KRSTAYHEAGHALVSLHIPGC-------DPLHKVTVIPRGRALGVTWNLPERDQLS---I 484
Query: 288 SGTAFDRYSMVLFAGIAAEALIYGEAE---GGEND 319
+ + F G AE L+YGE G ND
Sbjct: 485 NIKQMKARLALCFGGRIAEQLVYGEDSLNTGASND 519
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,966,362
Number of Sequences: 539616
Number of extensions: 5712594
Number of successful extensions: 12681
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 12665
Number of HSP's gapped (non-prelim): 33
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)