BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016455
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
+ GA+ NAS D GI TPL LA +G +EIV E+ + V D++G
Sbjct: 68 KNGADVNAS--DLTGI----------TPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGH 114
Query: 90 NILHVAIKYRQLEIFELVVQ 109
LH+A KY LEI E++++
Sbjct: 115 TPLHLAAKYGHLEIVEVLLK 134
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 48 SSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELV 107
++ +++ TPL LA +G +EIV E+ V D G LH+A LEI E++
Sbjct: 41 NATDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 108 VQMEVPMRRLVRKIDNGGNTLLHMT 132
++ V DN G+T LH+
Sbjct: 100 LKHGAD----VNAYDNDGHTPLHLA 120
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 42 QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL 101
+ G ++ + N TPL LA ++G +E+VK + V D GR LH+A + L
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHL 81
Query: 102 EIFELVVQMEVPMRRLVRKIDNGGNTLLHMTG 133
E+ +L+++ V D G T LH+
Sbjct: 82 EVVKLLLEAGAD----VNAKDKNGRTPLHLAA 109
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 53 NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEV 112
N TPL LA ++G +E+VK + V D GR LH+A + LE+ +L+++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 113 PMRRLVRKIDNGGNTLLHMTG 133
V D G T LH+
Sbjct: 60 D----VNAKDKNGRTPLHLAA 76
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 42 QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL 101
+ G ++ + N TPL LA ++G +E+VK + V D GR LH+A + L
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHL 114
Query: 102 EIFELVVQ 109
E+ +L+++
Sbjct: 115 EVVKLLLE 122
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 53 NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEV 112
N TPL LA ++G +E+VK + V D GR LH+A + LE+ +L+++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 113 PMRRLVRKIDNGGNTLLHMTG 133
V D G T LH+
Sbjct: 60 D----VNAKDKNGRTPLHLAA 76
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 42 QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL 101
+ G ++ + N TPL LA ++G +E+VK + V D GR LH+A + L
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHL 81
Query: 102 EIFELVVQ 109
E+ +L+++
Sbjct: 82 EVVKLLLE 89
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 15 EITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF 74
E T + QD + GA+ NA +D G+ TPL LA K G +EIV E+
Sbjct: 20 EATRAGQDDEVRILMANGADVNA--MDDAGV----------TPLHLAAKRGHLEIV-EVL 66
Query: 75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
+ V D GR LH+A LEI E++++
Sbjct: 67 LKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 15 EITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF 74
E T + QD + GA+ NA +D G+ TPL LA K G +EIV E+
Sbjct: 20 EATRAGQDDEVRILMANGADVNA--MDDAGV----------TPLHLAAKRGHLEIV-EVL 66
Query: 75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
+ V D GR LH+A LEI E++++
Sbjct: 67 LKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 15 EITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF 74
E + QD + GA+ NA+ D G+ TPL LA G +EIV E+
Sbjct: 20 EAARAGQDDEVRILMANGADVNAT--DASGL----------TPLHLAATYGHLEIV-EVL 66
Query: 75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGI 134
+ V ID G LH+A LEI E++++ V +D G+T LH+ I
Sbjct: 67 LKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD----VNAVDTWGDTPLHLAAI 122
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
++GA+ NA +D G TPL LA G +EIV E+ + V +D G
Sbjct: 68 KHGADVNA--IDIXG----------STPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGD 114
Query: 90 NILHVAIKYRQLEIFELVVQ 109
LH+A LEI E++++
Sbjct: 115 TPLHLAAIMGHLEIVEVLLK 134
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 30 RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
R G + + G ++A++ TPL LA SG +EIV E+ + V+ D G
Sbjct: 23 RAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGY 81
Query: 90 NILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMT 132
LH+A + LEI E++++ V +D+ G T LH+
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNGAD----VNAMDSDGMTPLHLA 120
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
TPL LA G +EIV E+ V +D +G LH+A K+ LEI E++++
Sbjct: 82 TPLHLAAYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 15 EITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF 74
E T + QD + GA+ NA +D G+ TPL LA K G +EIV E+
Sbjct: 20 EATRAGQDDEVRILMANGADVNA--MDDAGV----------TPLHLAAKRGHLEIV-EVL 66
Query: 75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
+ V D GR LH+A LEI E++++
Sbjct: 67 LKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 15 EITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF 74
E + QD + GA+ NA+ D G+ TPL LA G +EIV E+
Sbjct: 20 EAARAGQDDEVRILMANGADVNAT--DASGL----------TPLHLAATYGHLEIV-EVL 66
Query: 75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGI 134
+ V ID G LH+A LEI E++++ V +D G+T LH+ I
Sbjct: 67 LKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD----VNAVDTWGDTPLHLAAI 122
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
++GA+ NA +D G TPL LA G +EIV E+ + V +D G
Sbjct: 68 KHGADVNA--IDIMG----------STPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGD 114
Query: 90 NILHVAIKYRQLEIFELVVQ 109
LH+A LEI E++++
Sbjct: 115 TPLHLAAIMGHLEIVEVLLK 134
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 54 AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
TPL LA K+G +EIV E+ Y V D+ G LH+A LEI E++++
Sbjct: 47 GHTPLHLAAKTGHLEIV-EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 48 SSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELV 107
++ +D+ +TPL LA G +EIV E+ + V D G LH+A Y LEI E++
Sbjct: 41 NAEDDSGKTPLHLAAIKGHLEIV-EVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 108 VQ 109
++
Sbjct: 100 LK 101
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 48 SSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI--LHVAIKYRQLEIFE 105
S N A+ L A K+G +E VK++ V Q+V D EGR LH A Y ++ + E
Sbjct: 4 GSGNSEADRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVSVVE 61
Query: 106 LVVQMEVPMRRLVRKIDNGGNTLLH 130
++Q V D GG LH
Sbjct: 62 YLLQHGAD----VHAKDKGGLVPLH 82
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 45 IGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI--LHVAIKYRQLE 102
+G S N A+ L A K+G +E VK++ V Q+V D EGR LH A Y ++
Sbjct: 3 MGISLGNSEADRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVS 60
Query: 103 IFELVVQMEVPMRRLVRKIDNGGNTLLH 130
+ E ++Q V D GG LH
Sbjct: 61 VVEYLLQHGAD----VHAKDKGGLVPLH 84
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 32 GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
GA+ NAS D + TPL A K G EIVK + + V D +GR
Sbjct: 27 GADVNASDSDGR------------TPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTP 73
Query: 92 LHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH 130
LH A K EI +L++ V D+ G T LH
Sbjct: 74 LHYAAKEGHKEIVKLLISKGAD----VNAKDSDGRTPLH 108
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 43 KGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE 102
KG ++ + + TPL A K G EIVK + + V D +GR LH A K E
Sbjct: 59 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKE 117
Query: 103 IFELVV 108
I +L++
Sbjct: 118 IVKLLI 123
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 43 KGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE 102
KG ++ + + TPL A K G EIVK + + V D +GR L +A ++ E
Sbjct: 92 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEE 150
Query: 103 IFELVVQM 110
I +L+ +
Sbjct: 151 IVKLLEKQ 158
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 17/79 (21%)
Query: 32 GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGR 89
GA+PNAS D + TPL A ++G EIVK + + P A D +GR
Sbjct: 27 GADPNASDSDGR------------TPLHYAAENGHKEIVKLLLSKGADPNAK---DSDGR 71
Query: 90 NILHVAIKYRQLEIFELVV 108
LH A + EI +L++
Sbjct: 72 TPLHYAAENGHKEIVKLLL 90
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
+Y A+ NAS D+ G TPL LA G +EIV E+ Y V +D +G
Sbjct: 68 KYAADVNAS--DKSGW----------TPLHLAAYRGHLEIV-EVLLKYGADVNAMDYQGY 114
Query: 90 NILHVAIKYRQLEIFELVVQ 109
LH+A + LEI E++++
Sbjct: 115 TPLHLAAEDGHLEIVEVLLK 134
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMR 115
TPL L +G +EI+ E+ Y V D G LH+A LEI E++++
Sbjct: 49 TPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD-- 105
Query: 116 RLVRKIDNGGNTLLHMT 132
V +D G T LH+
Sbjct: 106 --VNAMDYQGYTPLHLA 120
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 54 AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVP 113
+TPL LA + G +EIV E+ V +D G LH+A K LEI E++++
Sbjct: 47 GDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 114 MRRLVRKIDNGGNTLLHMT 132
V D G+T LH+
Sbjct: 106 ----VNADDTIGSTPLHLA 120
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
TPL LA K G +EIV E+ Y V D G LH+A LEI E++++
Sbjct: 82 TPLHLAAKRGHLEIV-EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 23/104 (22%)
Query: 32 GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGR 89
GA+ NAS D K TPL LA ++G E+VK + + P A D +G+
Sbjct: 27 GADVNASDSDGK------------TPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGK 71
Query: 90 NILHVAIKYRQLEIFELVV-QMEVPMRRLVRKIDNGGNTLLHMT 132
LH+A + E+ +L++ Q P + D+ G T LH+
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAK-----DSDGKTPLHLA 110
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 31 YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEG 88
GA+PNA D K TPL LA ++G E+VK + + P D +G
Sbjct: 92 QGADPNAKDSDGK------------TPLHLAAENGHKEVVKLLLSQGADPNTS---DSDG 136
Query: 89 RNILHVAIKYRQLEIFELV 107
R L +A ++ E+ +L+
Sbjct: 137 RTPLDLAREHGNEEVVKLL 155
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 50 ANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI--LHVAIKYRQLEIFELV 107
N A+ L A K+G +E VK++ V Q+V D EGR LH A Y ++ + E +
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61
Query: 108 VQMEVPMRRLVRKIDNGGNTLLH 130
+Q V D GG LH
Sbjct: 62 LQHGAD----VHAKDKGGLVPLH 80
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMR 115
TPL LA + G +EIV+ + V D +G LH+A + LEI E++++
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 93
Query: 116 RLVRKIDNGGNTLLHMT 132
V D G T LH+
Sbjct: 94 --VNAKDKDGYTPLHLA 108
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
TPL LA + G +EIV+ + V D +G LH+A + LEI E++++
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMR 115
TPL LA + G +EIV+ + V D +G LH+A + LEI E++++
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 93
Query: 116 RLVRKIDNGGNTLLHMT 132
V D G T LH+
Sbjct: 94 --VNAKDKDGYTPLHLA 108
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
TPL LA + G +EIV+ + V D +G LH+A + LEI E++++
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMR 115
TPL LA + G +EIV+ + V D +G LH+A + LEI E++++
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 105
Query: 116 RLVRKIDNGGNTLLHMT 132
V D G T LH+
Sbjct: 106 --VNAKDKDGYTPLHLA 120
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
TPL LA + G +EIV+ + V D +G LH+A + LEI E++++
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
++GA+ NA D TPL LA +G +EIV E+ Y V D G
Sbjct: 68 KHGADVNARDTD------------GWTPLHLAADNGHLEIV-EVLLKYGADVNAQDAYGL 114
Query: 90 NILHVAIKYRQLEIFELVVQ 109
LH+A LEI E++++
Sbjct: 115 TPLHLAADRGHLEIVEVLLK 134
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 48 SSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELV 107
++ +D TPL LA G EIV E+ + V D +G LH+A LEI E++
Sbjct: 41 NAHDDQGSTPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 108 VQ 109
++
Sbjct: 100 LK 101
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 48 SSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELV 107
++ +DN TPL LA +G +EIV E+ V D G LH+A LEI E++
Sbjct: 33 NATDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91
Query: 108 VQMEVPMRRLVRKIDNGGNTLLHMTGI 134
++ V D G T LH+ +
Sbjct: 92 LKHGAD----VNAYDRAGWTPLHLAAL 114
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
+ GA+ NAS D GI TPL LA G +EIV E+ + V D G
Sbjct: 60 KNGADVNAS--DSAGI----------TPLHLAAYDGHLEIV-EVLLKHGADVNAYDRAGW 106
Query: 90 NILHVAIKYRQLEIFELVVQ 109
LH+A QLEI E++++
Sbjct: 107 TPLHLAALSGQLEIVEVLLK 126
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 14 WEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEI 73
E + QD + GA+ NA VD G+ TPL LA SG +EIV E+
Sbjct: 19 LEAARAGQDDEVRILIANGADVNA--VDNTGL----------TPLHLAAVSGHLEIV-EV 65
Query: 74 FNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMT 132
+ V+ D G LH+A LEI E++++ V D G+T LH+
Sbjct: 66 LLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD----VNAFDMTGSTPLHLA 120
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
TPL LA +G +EIV E+ Y V D G LH+A LEI E++++
Sbjct: 82 TPLHLAAMTGHLEIV-EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
TPL LA + G +EIV E+ V D G LH+A K LEI E++++
Sbjct: 82 TPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
+ GA+ NA VD G+ TPL LA G +EIV E+ V D EG
Sbjct: 68 KNGADVNA--VDHAGM----------TPLRLAALFGHLEIV-EVLLKNGADVNANDMEGH 114
Query: 90 NILHVAIKYRQLEIFELVVQ 109
LH+A + LEI E++++
Sbjct: 115 TPLHLAAMFGHLEIVEVLLK 134
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 48 SSANDNAE-----TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE 102
+ A+ NAE TPL LA +G +EIV E+ V +D G L +A + LE
Sbjct: 36 NGADVNAEDASGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLE 94
Query: 103 IFELVVQMEVPMRRLVRKIDNGGNTLLHMTGI 134
I E++++ V D G+T LH+ +
Sbjct: 95 IVEVLLKNGAD----VNANDMEGHTPLHLAAM 122
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 42 QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA--VEHIDDEGRNILHVAIKY- 98
+ G + N+ ETPLFLA + G E K + + + +H+D R+I + +
Sbjct: 146 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 205
Query: 99 --RQLEIFELV 107
R L+ + LV
Sbjct: 206 IVRLLDEYNLV 216
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 32 GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
GA+ NA+ D+KG TPL LA +EIV E+ + V D++G
Sbjct: 37 GADVNAN--DRKG----------NTPLHLAADYDHLEIV-EVLLKHGADVNAHDNDGSTP 83
Query: 92 LHVAIKYRQLEIFELVVQ 109
LH+A + LEI E++++
Sbjct: 84 LHLAALFGHLEIVEVLLK 101
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 58 LFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRL 117
L A ++G + V+ I V D +G LH+A Y LEI E++++
Sbjct: 18 LLEAARAGQDDEVR-ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD---- 72
Query: 118 VRKIDNGGNTLLHMTGI 134
V DN G+T LH+ +
Sbjct: 73 VNAHDNDGSTPLHLAAL 89
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 51 NDNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGRNILHVAIKYRQLEIFELVV 108
+D+ TP +A G +E+VK +++ + P + I ++G LH+A+ + E+ + ++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 109 QMEVPMR 115
+ +R
Sbjct: 128 ENGASVR 134
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 51 NDNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGRNILHVAIKYRQLEIFELVV 108
+D+ TP +A G +E+VK +++ + P + I ++G LH+A+ + E+ + ++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 109 QMEVPMR 115
+ +R
Sbjct: 128 ENGASVR 134
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 51 NDNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGRNILHVAIKYRQLEIFELVV 108
+D+ TP +A G +E+VK +++ + P + I ++G LH+A+ + E+ + ++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 109 QMEVPMR 115
+ +R
Sbjct: 128 ENGASVR 134
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 42 QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA--VEHIDDEGRNILHVAIKYR 99
+ G + N+ ETPLFLA + G E K + + + +H+D R+I + +
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 237
Query: 100 QLEIFEL 106
+ + +L
Sbjct: 238 IVRLLDL 244
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 14 WEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEI 73
E + QD + GA+ NA +D+ G+ TPL LA + G +EIV E+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNA--LDEDGL----------TPLHLAAQLGHLEIV-EV 65
Query: 74 FNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
Y V D+ G LH+A LEI E++++
Sbjct: 66 LLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 42 QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA--VEHIDDEGRNILHVAIKYR 99
+ G + N+ ETPLFLA + G E K + + + +H+D R+I + +
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 237
Query: 100 QLEIFEL 106
+ + +L
Sbjct: 238 IVRLLDL 244
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 42 QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA--VEHIDDEGRNILHVAIKY- 98
+ G + N+ ETPLFLA + G E K + + + +H+D R+I + +
Sbjct: 179 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 238
Query: 99 --RQLEIFELV 107
R L+ + LV
Sbjct: 239 IVRLLDEYNLV 249
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 42 QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA--VEHIDDEGRNI 91
+ G + N+ ETPLFLA + G E K + + + +H+D R+I
Sbjct: 69 KNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL 101
+ G ++ + N TPL LA G +EIV E+ Y V D G L++A + L
Sbjct: 56 RNGADVNAVDTNGTTPLHLAASLGHLEIV-EVLLKYGADVNAKDATGITPLYLAAYWGHL 114
Query: 102 EIFELVVQ 109
EI E++++
Sbjct: 115 EIVEVLLK 122
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
TPL +A G +EIV E+ V +D G LH+A LEI E++++
Sbjct: 37 TPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 42 QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA--VEHIDDEGRNI 91
+ G + N+ ETPLFLA + G E K + + + +H+D R+I
Sbjct: 143 KNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 194
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 64 SGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDN 123
SG +E +KE D + R LH A EI E ++Q+ VP V D+
Sbjct: 17 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDKDD 72
Query: 124 GGNTLLHMTGIKRSDYVPEKMEG 146
G + LH+ D + + + G
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLG 95
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 64 SGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDN 123
SG +E +KE D + R LH A EI E ++Q+ VP V D+
Sbjct: 16 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDKDD 71
Query: 124 GGNTLLHMTGIKRSDYVPEKMEG 146
G + LH+ D + + + G
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLG 94
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 14 WEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEI 73
E + QD + GA+ NA D+ G+ TPL+LAT G +EIV E+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAK--DEYGL----------TPLYLATAHGHLEIV-EV 65
Query: 74 FNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
V +D G LH+A LEI E++++
Sbjct: 66 LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 32 GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
GA+ NAS D + TPL A ++G E+VK + + V D +GR
Sbjct: 27 GADVNASDSDGR------------TPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTP 73
Query: 92 LHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH 130
LH A + E+ +L++ V D+ G T LH
Sbjct: 74 LHHAAENGHKEVVKLLISKGAD----VNAKDSDGRTPLH 108
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMR 115
TPL LA G +EIV E+ V D G LH+A + LEI E++++
Sbjct: 49 TPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD-- 105
Query: 116 RLVRKIDNGGNTLLHMT 132
V D+ G T LH+
Sbjct: 106 --VNAKDDNGITPLHLA 120
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 42 QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL 101
+ G ++ +DN TPL LA G +EIV E+ Y V D G+ ++I
Sbjct: 101 KNGADVNAKDDNGITPLHLAANRGHLEIV-EVLLKYGADVNAQDKFGKTAFDISINNGNE 159
Query: 102 EIFELVVQM 110
++ E++ ++
Sbjct: 160 DLAEILQKL 168
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 47 ESSANDN-----AETPLFLATKSGCIEIVKEIFNV-YPQAVEHIDDEGRNILHVAIKYRQ 100
E++AN N TPL +A + G +E V + QA + +G LHVA KY +
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC--MTKKGFTPLHVAAKYGK 158
Query: 101 LEIFELVVQME 111
+ + EL+++ +
Sbjct: 159 VRVAELLLERD 169
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 42 QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL 101
Q+G + +N ETPL +A ++G E+ K + + D+ + LH A +
Sbjct: 35 QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARIGHT 93
Query: 102 EIFELVVQ 109
+ +L+++
Sbjct: 94 NMVKLLLE 101
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 40 VDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGRNILHVAIK 97
V +KG + +++ +TP+ LA + G IE+V + +AV+ D R +
Sbjct: 299 VGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNH 358
Query: 98 YRQLEIFE 105
+ ++IF+
Sbjct: 359 HNIVDIFD 366
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 21 QDQSKPKIHRYGANPNASSVDQ---KGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY 77
+D + P +H N +A V + KG ++ + + TPL LA K+G EIVK +
Sbjct: 7 KDGNTP-LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AK 64
Query: 78 PQAVEHIDDEGRNILHVAIKYRQLEIFELV 107
V +G H+A K EI +L+
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 48 SSANDNAE-----TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE 102
+ A+ NAE TPL LA + +EIV E+ V ID G LH+ Y LE
Sbjct: 36 NGADVNAEDKVGLTPLHLAAMNDHLEIV-EVLLKNGADVNAIDAIGETPLHLVAMYGHLE 94
Query: 103 IFELVVQ 109
I E++++
Sbjct: 95 IVEVLLK 101
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 51 NDNAETPLFLATKSGCIEIVKEIFNVYP--QAVEHID 85
+D ETPLFLA + G E K + + + + +H+D
Sbjct: 181 DDKDETPLFLAAREGSYEASKALLDNFANREITDHMD 217
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 26 PKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF--NVYPQAVEH 83
P + ++GAN A + DQ PL LA + G ++VK + N P
Sbjct: 103 PLLLKHGANAGARNADQA------------VPLHLACQQGHFQVVKCLLDSNAKPNKK-- 148
Query: 84 IDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPE 142
D G L A E+ L++Q + +N GNT LH I++ +V E
Sbjct: 149 -DLSGNTPLIYACSGGHHELVALLLQHGAS----INASNNKGNTALHEAVIEKHVFVVE 202
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 64 SGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDN 123
SG ++ +KE D + R LH A EI E ++Q+ VP V D+
Sbjct: 16 SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDKDD 71
Query: 124 GGNTLLHMTGIKRSDYV 140
G + LH+ D +
Sbjct: 72 AGWSPLHIAASAGXDEI 88
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 64 SGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDN 123
SG ++ +KE D + R LH A EI E ++Q+ VP V D+
Sbjct: 16 SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDKDD 71
Query: 124 GGNTLLHMTGIKRSDYV 140
G + LH+ D +
Sbjct: 72 AGWSPLHIAASAGRDEI 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,358,187
Number of Sequences: 62578
Number of extensions: 451672
Number of successful extensions: 1388
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 115
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)