Query         016455
Match_columns 389
No_of_seqs    596 out of 2592
Neff          9.1 
Searched_HMMs 13730
Date          Mon Mar 25 13:52:28 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016455.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016455hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1uoha_ d.211.1.1 (A:) 26S pro  99.9 1.4E-24   1E-28  191.7  10.4  161    5-192    21-217 (223)
  2 d1oy3d_ d.211.1.1 (D:) Transcr  99.9 1.4E-24 9.9E-29  195.0   6.8  165    2-189    23-237 (255)
  3 d1myoa_ d.211.1.1 (A:) Myotrop  99.9   1E-23 7.3E-28  167.3   8.9  104   26-134     4-110 (118)
  4 d1uoha_ d.211.1.1 (A:) 26S pro  99.9 3.1E-23 2.2E-27  183.0   9.9  131    2-141    84-217 (223)
  5 d1s70b_ d.211.1.1 (B:) Myosin   99.9 1.3E-22 9.6E-27  185.4  11.3  159    2-187    54-275 (291)
  6 d1bd8a_ d.211.1.1 (A:) Cell cy  99.9 1.1E-21 7.8E-26  163.1  11.5  130    2-141    16-149 (156)
  7 d1ycsb1 d.211.1.1 (B:327-456)   99.9 4.6E-22 3.3E-26  160.4   8.1  113   24-141     1-119 (130)
  8 d1bi7b_ d.211.1.1 (B:) Cell cy  99.9 8.7E-23 6.4E-27  163.5   3.7  111   25-141     4-118 (125)
  9 d2fo1e1 d.211.1.1 (E:1021-1297  99.8 2.1E-22 1.6E-26  182.3   6.2  182    3-189    16-266 (277)
 10 d1oy3d_ d.211.1.1 (D:) Transcr  99.8 1.2E-21 8.7E-26  175.5  10.6  132    2-141    59-241 (255)
 11 d1ot8a_ d.211.1.1 (A:) Neuroge  99.8 3.3E-22 2.4E-26  173.7   6.7  161    2-189     3-201 (209)
 12 d1ihba_ d.211.1.1 (A:) p18ink4  99.8 1.7E-21 1.3E-25  161.3  10.6  133    1-141    14-149 (156)
 13 d1iknd_ d.211.1.1 (D:) I-kappa  99.8 7.1E-22 5.2E-26  173.7   6.3  162    2-189    20-190 (221)
 14 d2fo1e1 d.211.1.1 (E:1021-1297  99.8 2.8E-21   2E-25  174.8   9.1  130    5-141    58-270 (277)
 15 d1ixva_ d.211.1.1 (A:) 26S pro  99.8 6.4E-21 4.6E-25  167.8  10.7  114   51-186   102-215 (229)
 16 d1myoa_ d.211.1.1 (A:) Myotrop  99.8 7.1E-22 5.2E-26  156.5   3.8  108   55-186     3-110 (118)
 17 d1dcqa1 d.211.1.1 (A:369-522)   99.8 2.4E-21 1.7E-25  160.7   5.9  114   23-141     5-130 (154)
 18 d1awcb_ d.211.1.1 (B:) GA bind  99.8 7.8E-21 5.7E-25  156.8   9.0  131    2-141    16-149 (153)
 19 d1ihba_ d.211.1.1 (A:) p18ink4  99.8 7.8E-21 5.7E-25  157.3   8.4  140   26-189     3-145 (156)
 20 d1sw6a_ d.211.1.1 (A:) Swi6 an  99.8 1.8E-21 1.3E-25  179.5   4.7  155    9-185    94-300 (301)
 21 d1ot8a_ d.211.1.1 (A:) Neuroge  99.8   2E-20 1.5E-24  162.2  10.6  132    2-141    37-205 (209)
 22 d1bd8a_ d.211.1.1 (A:) Cell cy  99.8 1.1E-20   8E-25  156.9   7.9  137   27-189     5-145 (156)
 23 d1n11a_ d.211.1.1 (A:) Ankyrin  99.8 4.6E-20 3.3E-24  175.9  11.7  164    2-189   179-375 (408)
 24 d1awcb_ d.211.1.1 (B:) GA bind  99.8 5.8E-20 4.2E-24  151.5   9.2  139   26-189     4-145 (153)
 25 d1bi7b_ d.211.1.1 (B:) Cell cy  99.8   1E-19 7.4E-24  145.4   9.9  103    2-109    17-123 (125)
 26 d1n11a_ d.211.1.1 (A:) Ankyrin  99.8 4.2E-20 3.1E-24  176.2   9.0  132    2-141   245-379 (408)
 27 d1k1aa_ d.211.1.1 (A:) bcl-3 {  99.8 6.3E-20 4.6E-24  159.0   8.4  154    9-188    28-221 (228)
 28 d1k1aa_ d.211.1.1 (A:) bcl-3 {  99.8 4.9E-19 3.5E-23  153.3  11.0  132    2-141    54-226 (228)
 29 d1wdya_ d.211.1.1 (A:) RNase L  99.8 7.7E-19 5.6E-23  159.1  12.4  165    1-189    18-265 (285)
 30 d1wdya_ d.211.1.1 (A:) RNase L  99.8 9.6E-19   7E-23  158.5  12.8  118    2-123   162-284 (285)
 31 d1iknd_ d.211.1.1 (D:) I-kappa  99.8 7.2E-19 5.3E-23  154.1  11.1  132    2-141    53-194 (221)
 32 d1ixva_ d.211.1.1 (A:) 26S pro  99.8 2.8E-18   2E-22  150.6  13.0  130    2-135    48-216 (229)
 33 d1dcqa1 d.211.1.1 (A:369-522)   99.8   4E-18 2.9E-22  140.9  12.8  110    3-113    21-139 (154)
 34 d1sw6a_ d.211.1.1 (A:) Swi6 an  99.7   1E-18 7.5E-23  160.8   9.5  125    2-133   121-300 (301)
 35 d1s70b_ d.211.1.1 (B:) Myosin   99.7 3.7E-18 2.7E-22  155.4  12.6  112   25-141    41-155 (291)
 36 d1ycsb1 d.211.1.1 (B:327-456)   99.7 1.2E-18 8.8E-23  140.0   7.3  106    2-111    15-126 (130)
 37 d2ajaa1 a.118.24.1 (A:3-348) H  99.7 6.7E-20 4.9E-24  172.2  -3.5  138    3-142    61-214 (346)
 38 d2ajaa1 a.118.24.1 (A:3-348) H  99.7 5.7E-19 4.2E-23  165.8  -1.6  108    2-113   107-222 (346)

No 1  
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90  E-value=1.4e-24  Score=191.69  Aligned_cols=161  Identities=17%  Similarity=0.141  Sum_probs=122.0

Q ss_pred             HHHHhCCCCCccccccCCCCcHHHHHccCCCChh------------------------------------hHhhcCCCCC
Q 016455            5 RFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS------------------------------------SVDQKGIGES   48 (389)
Q Consensus         5 ~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~------------------------------------~Ll~~ga~~n   48 (389)
                      ++|.+.+.+++.+|.+   +.+|||+|+..|..+                                    .|+++|++++
T Consensus        21 ~~l~~~~~~~~~~D~~---G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~   97 (223)
T d1uoha_          21 ESILADKSLATRTDQD---SRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN   97 (223)
T ss_dssp             HHHHHCGGGGGCCCTT---SCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHhCCCcCcCcCCC---CCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeE
Confidence            4444566777777763   445677666555332                                    4677888888


Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCccc
Q 016455           49 SANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTL  128 (389)
Q Consensus        49 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~Tp  128 (389)
                      .+|.+|.||||+|+..|+.+++++|+ +.|.+++.+|..|.||||+|+..++.+++++|.+.+.+    ++.+|.+|+||
T Consensus        98 ~~d~~g~tpL~~A~~~~~~e~~~~Ll-~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~----i~~~d~~g~Tp  172 (223)
T d1uoha_          98 AVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS----TNIQDTEGNTP  172 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTCCCH
T ss_pred             eeCCCCCchhhHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccce----eeeccCCCCce
Confidence            88888889999998888888888888 67888888888888999999888888888888888887    88888889999


Q ss_pred             chhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhhhhH
Q 016455          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELR  192 (389)
Q Consensus       129 Lh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~~~~  192 (389)
                      ||+|+..++.+++      .++++.+             ..++.+|++|+||+|+|+..+.+..
T Consensus       173 L~~Aa~~g~~~~v------~~LL~~G-------------ad~~~~d~~g~tpl~~A~~~~~~i~  217 (223)
T d1uoha_         173 LHLACDEERVEEA------KLLVSQG-------------ASIYIENKEEKTPLQVAKGGLGLIL  217 (223)
T ss_dssp             HHHHHHTTCHHHH------HHHHHTT-------------CCSCCCCTTSCCHHHHCCTTHHHHH
T ss_pred             eccccccCcHHHH------HHHHHCC-------------CCCCCCCCCCCCHHHHHHCCCHHHH
Confidence            9999888877666      1111111             1157899999999999976555443


No 2  
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.89  E-value=1.4e-24  Score=194.96  Aligned_cols=165  Identities=21%  Similarity=0.186  Sum_probs=131.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC-
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY-   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~-   77 (389)
                      +++++|+++|++++..|.....+.||||.|+..+..+   .|+++|++++.+|.+|.||||+|+..|+.++++.|++.. 
T Consensus        23 ~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~  102 (255)
T d1oy3d_          23 PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP  102 (255)
T ss_dssp             HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCC
T ss_pred             HHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhcc
Confidence            6889999999986655554456778899988877655   889999999999999999999999999999998886411 


Q ss_pred             ---------------------------------------------CCCccccccCCChHHHHHHHhCChHHHHHHHccCC
Q 016455           78 ---------------------------------------------PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEV  112 (389)
Q Consensus        78 ---------------------------------------------~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~  112 (389)
                                                                   +.+++.+|.+|+||||+|+++++.+++++|++.++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~  182 (255)
T d1oy3d_         103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA  182 (255)
T ss_dssp             SSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             chhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccc
Confidence                                                         12345678889999999999999999999999988


Q ss_pred             ccccccc-ccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          113 PMRRLVR-KIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       113 ~~~~~~~-~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      +    .+ .++..|+||||+|++.++.+++      .++++.             ...++.+|++|+||+|+|.+.+.
T Consensus       183 ~----~~~~~~~~g~TpL~~A~~~~~~~~v------~~Ll~~-------------gadin~~d~~g~t~L~~A~~~~~  237 (255)
T d1oy3d_         183 D----LNKPEPTCGRTPLHLAVEAQAASVL------ELLLKA-------------GADPTARMYGGRTPLGSALLRPN  237 (255)
T ss_dssp             C----TTCCCTTTCCCHHHHHHHTTCHHHH------HHHHHT-------------TCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             c----ccccccccccccccccccccHHHHH------HHHHHC-------------CCCCCCCCCCCCCHHHHHHHCCC
Confidence            7    44 4577899999999999887766      111111             01257899999999999887654


No 3  
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.89  E-value=1e-23  Score=167.34  Aligned_cols=104  Identities=16%  Similarity=0.137  Sum_probs=98.9

Q ss_pred             HHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChH
Q 016455           26 PKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        26 ~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~  102 (389)
                      +||++|+..|..+   .|+++|+|+|.+|.+|+||||+|+..|+.+++++|+ ..|++++.+|.+|+||||+|+.+|+.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll-~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHH-HSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccc-cccceeeecccccccchhhhhhcCchh
Confidence            6799999998876   889999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHHHHHccCCcccccccccccCCcccchhccc
Q 016455          103 IFELVVQMEVPMRRLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus       103 iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~  134 (389)
                      ++++|+++|++    ++.+|.+|+||||+|..
T Consensus        83 ~v~~Ll~~Gad----~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          83 CVKLLLSKGAD----KTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHHHTTCCC----SSSSSSSTCCCCCTCSS
T ss_pred             hhhhhhccccc----ceeeCCCCCCHHHHHhH
Confidence            99999999999    99999999999999954


No 4  
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.88  E-value=3.1e-23  Score=183.02  Aligned_cols=131  Identities=15%  Similarity=0.220  Sum_probs=118.6

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+++|..|.+   +.+|||.|+..+..+   +|+++|++++.+|..|.||||+|+..|+.++++.|+ ..+
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~---g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~-~~~  159 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQN---GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL-YYK  159 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTT---CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             chhHHHhccCceeEeeCCC---CCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhc-ccc
Confidence            7899999999999999974   456788887776655   889999999999999999999999999999999998 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      .+++.+|.+|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|. .++.+++
T Consensus       160 ~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad----~~~~d~~g~tpl~~A~-~~~~~i~  217 (223)
T d1uoha_         160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS----IYIENKEEKTPLQVAK-GGLGLIL  217 (223)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHCC-TTHHHHH
T ss_pred             ceeeeccCCCCceeccccccCcHHHHHHHHHCCCC----CCCCCCCCCCHHHHHH-CCCHHHH
Confidence            99999999999999999999999999999999999    9999999999999985 5665554


No 5  
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=99.87  E-value=1.3e-22  Score=185.41  Aligned_cols=159  Identities=18%  Similarity=0.197  Sum_probs=132.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+|+|..|.+   +.+|||.|+..|..+   +|+++|++.+..+..+.+|||.|+..|+.++++.|++ .+
T Consensus        54 ~~v~~Ll~~Gadvn~~d~~---G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~-~~  129 (291)
T d1s70b_          54 EEVLRLLERGADINYANVD---GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS-QG  129 (291)
T ss_dssp             HHHHHHHHHCCCTTCBCTT---CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TT
T ss_pred             HHHHHHHHCCCCCCccCCC---CCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccc-cC
Confidence            7899999999999999974   456788888777655   8999999999999999999999999999999999983 33


Q ss_pred             CCc------------------------------------------------------------cccccCCChHHHHHHHh
Q 016455           79 QAV------------------------------------------------------------EHIDDEGRNILHVAIKY   98 (389)
Q Consensus        79 ~~~------------------------------------------------------------~~~d~~G~t~Lh~A~~~   98 (389)
                      ...                                                            ...+..|.||||.|+..
T Consensus       130 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~  209 (291)
T d1s70b_         130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (291)
T ss_dssp             CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             cccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHc
Confidence            322                                                            22445688999999999


Q ss_pred             CChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCC
Q 016455           99 RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGF  178 (389)
Q Consensus        99 ~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~  178 (389)
                      |+.+++++|++.|++    +|.+|.+|+||||+|++.|+.+++      .++++.+.             .++.+|++|+
T Consensus       210 ~~~~~~~~Ll~~g~d----in~~~~~g~TpL~~A~~~g~~~iv------~lLl~~Ga-------------dv~~~d~~G~  266 (291)
T d1s70b_         210 GYTEVLKLLIQARYD----VNIKDYDGWTPLHAAAHWGKEEAC------RILVENLC-------------DMEAVNKVGQ  266 (291)
T ss_dssp             TCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHHHTTCHHHH------HHHHHTTC-------------CTTCCCTTSC
T ss_pred             CChhhhcccccceec----ccccccCCCCHHHHHHHcCCHHHH------HHHHHCCC-------------CCCCcCCCCC
Confidence            999999999999998    999999999999999999998877      22221111             1578899999


Q ss_pred             ChHHHHhhh
Q 016455          179 TPEELFATA  187 (389)
Q Consensus       179 Tpl~la~~~  187 (389)
                      ||+|+|++.
T Consensus       267 TaL~~A~e~  275 (291)
T d1s70b_         267 TAFDVADED  275 (291)
T ss_dssp             CTTTSCCSG
T ss_pred             CHHHHHHHH
Confidence            999999863


No 6  
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85  E-value=1.1e-21  Score=163.11  Aligned_cols=130  Identities=15%  Similarity=0.197  Sum_probs=115.9

Q ss_pred             HHHHHHHhC-CCCCccccccCCCCcHHHHHccCCCC---hhhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRR-DTSWEITDSFQDQSKPKIHRYGANPN---ASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~-ga~vn~~d~~~~~~~~~lh~a~~~~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      |+++.|+++ |+++|..|.   .+.+|+|.|+. +.   ++.|+++|++++..+..|.+|++.++..++.++++.++ +.
T Consensus        16 ~~vk~lL~~~~~~~n~~d~---~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~   90 (156)
T d1bd8a_          16 QEVRRLLHRELVHPDALNR---FGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV-EH   90 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCCT---TSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHHhCCCCCCccCC---CCCcccccccc-ccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            678888875 789999986   45577887764 43   34889999999999999999999999999999999999 67


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +.+++.+|.+|+||||+|++.|+.+++++|+ .|++    ++.+|.+|+||||+|++.|+.+++
T Consensus        91 ~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~----~~~~d~~G~TpL~~A~~~g~~~iv  149 (156)
T d1bd8a_          91 GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESD----LHRRDARGLTPLELALQRGAQDLV  149 (156)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC----TTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred             ccccccccCCCCeeecccccccccccccccc-cccc----ccccCCCCCCHHHHHHHcCCHHHH
Confidence            8899999999999999999999999999887 5777    899999999999999999998877


No 7  
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85  E-value=4.6e-22  Score=160.42  Aligned_cols=113  Identities=18%  Similarity=0.124  Sum_probs=100.8

Q ss_pred             CcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCC
Q 016455           24 SKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        24 ~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~  100 (389)
                      +++.|+.|+..|..+   .|+++|+|+|.+|.+|+||||+|+..|+.+++++|+ +.+++++.+|.+|+||||+|+.+|+
T Consensus         1 pl~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll-~~g~~~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           1 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccc-ccccccccccccCcccccccchhhH
Confidence            356788898888765   889999999999999999999999999999999999 6789999999999999999999999


Q ss_pred             hHHHHHHHccCCccccccccccc-CCcccchhc--cccCCCccc
Q 016455          101 LEIFELVVQMEVPMRRLVRKIDN-GGNTLLHMT--GIKRSDYVP  141 (389)
Q Consensus       101 ~~iv~~Ll~~g~~~~~~~~~~d~-~G~TpLh~A--~~~~~~~~~  141 (389)
                      .+++++|+++|++    ++.+|. +|+||++++  +++|+.+++
T Consensus        80 ~~~v~~Ll~~ga~----v~~~~~~~~~~~~~~~~a~~~g~~eiv  119 (130)
T d1ycsb1          80 VQVCKFLVESGAA----VFAMTYSDMQTAADKCEEMEEGYTQCS  119 (130)
T ss_dssp             HHHHHHHHHTTCC----TTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             HHHHHHHHHcCCC----cccccCCCCCCHHHHHHHHHcChHHHH
Confidence            9999999999998    887774 588887665  567777777


No 8  
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85  E-value=8.7e-23  Score=163.54  Aligned_cols=111  Identities=11%  Similarity=0.099  Sum_probs=101.0

Q ss_pred             cHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCC-hHHHHHHHhCC
Q 016455           25 KPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR-NILHVAIKYRQ  100 (389)
Q Consensus        25 ~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~-t~Lh~A~~~~~  100 (389)
                      ..+||.|+..|..+   .|+++|+|+|.+|.+|.||+|+|+ .|+.+++++|+ +.|++++.+|..|. ||||+|+++|+
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll-~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLL-LHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHH-TTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccccc
Confidence            35689998888766   889999999999999999999774 79999999999 78999999998876 69999999999


Q ss_pred             hHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455          101 LEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       101 ~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      .+++++|+++|++    ++.+|.+|+||||+|+++|+.+++
T Consensus        82 ~~~v~~Ll~~ga~----~~~~d~~G~T~l~~A~~~g~~~~v  118 (125)
T d1bi7b_          82 LDTLVVLHRAGAR----LDVRDAWGRLPVDLAEELGHRDVA  118 (125)
T ss_dssp             HHHHHHHHHHTCC----SSCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             ccccccccccccc----cccccCCCCCHHHHHHHcCCHHHH
Confidence            9999999999998    999999999999999999998877


No 9  
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}
Probab=99.85  E-value=2.1e-22  Score=182.25  Aligned_cols=182  Identities=15%  Similarity=0.133  Sum_probs=126.8

Q ss_pred             HHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---h--------HhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHH
Q 016455            3 LARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---S--------VDQKGIGESSANDNAETPLFLATKSGCIEIVK   71 (389)
Q Consensus         3 ~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~--------Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~   71 (389)
                      +++.|.+.+++  ..|.  ..+.||||+|+..|..+   .        ++++|+|+|.+|.+|+||||+|+..|+.++++
T Consensus        16 ~~~~l~~~~~n--~~~~--~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~   91 (277)
T d2fo1e1          16 ITEPITRESVN--IIDP--RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA   91 (277)
T ss_dssp             CCSCCSTTTTT--TCCC--SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhcCCC--cCCC--CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccc
Confidence            34455566655  4443  24678899999888665   3        36789999999999999999999999999999


Q ss_pred             HHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCc--------------------------------------
Q 016455           72 EIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVP--------------------------------------  113 (389)
Q Consensus        72 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~--------------------------------------  113 (389)
                      +|+ +.|++++.+|.+|+||||+|+..++.++++++...+..                                      
T Consensus        92 ~Ll-~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (277)
T d2fo1e1          92 YLM-KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA  170 (277)
T ss_dssp             HHH-HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTC
T ss_pred             ccc-ccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccc
Confidence            999 78999999999999999999999998888877543210                                      


Q ss_pred             -----ccccccccccCCcccchhccccCCCccccc--------------CCChhHHhhHHHHHHHHHHhhcch-hhhhhc
Q 016455          114 -----MRRLVRKIDNGGNTLLHMTGIKRSDYVPEK--------------MEGPALVLQEELLWYERVEEVSIP-HFRNHR  173 (389)
Q Consensus       114 -----~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~--------------l~~~~l~l~~~~~~~~~v~~~~~~-~~~~~~  173 (389)
                           .....+..+.+|.||||+++..++.+..+.              .+...++........+.++.+... ..++.+
T Consensus       171 ~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~  250 (277)
T d2fo1e1         171 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV  250 (277)
T ss_dssp             CSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC
T ss_pred             cccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCc
Confidence                 001223455677888888877666544311              112234433333333333333221 125788


Q ss_pred             cCCCCChHHHHhhhhh
Q 016455          174 NNMGFTPEELFATANN  189 (389)
Q Consensus       174 n~~g~Tpl~la~~~~~  189 (389)
                      |.+|+||+|+|.+.+.
T Consensus       251 d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         251 DATDHTARQLAQANNH  266 (277)
T ss_dssp             CSSSCCHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHcCC
Confidence            9999999999998764


No 10 
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.85  E-value=1.2e-21  Score=175.47  Aligned_cols=132  Identities=16%  Similarity=0.151  Sum_probs=111.5

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhh------------------------------------
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQ------------------------------------   42 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~------------------------------------   42 (389)
                      |++++|+++|+++|.+|.+   +.+|+|.|+..+..+   .|++                                    
T Consensus        59 ~iv~~Ll~~ga~i~~~d~~---g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (255)
T d1oy3d_          59 STVEKLYAAGAGVLVAERG---GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN  135 (255)
T ss_dssp             HHHHHHHHTTCCSSCCCTT---SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------
T ss_pred             ccccccccccccccccccc---cchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcc
Confidence            7899999999999999974   457788888766543   2221                                    


Q ss_pred             -----------cCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCcc-ccccCCChHHHHHHHhCChHHHHHHHcc
Q 016455           43 -----------KGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVE-HIDDEGRNILHVAIKYRQLEIFELVVQM  110 (389)
Q Consensus        43 -----------~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~-~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  110 (389)
                                 .+.+++.+|.+|.||||+|++.|+.++++.|++. +.+.+ ..+..|+||||+|++.|+.+++++|+++
T Consensus       136 ~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~  214 (255)
T d1oy3d_         136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA  214 (255)
T ss_dssp             --------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcc-cccccccccccccccccccccccHHHHHHHHHHC
Confidence                       2444567788999999999999999999999954 55554 4678899999999999999999999999


Q ss_pred             CCcccccccccccCCcccchhccccCCCccc
Q 016455          111 EVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       111 g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |++    ++.+|.+|+||||+|++.++.+++
T Consensus       215 gad----in~~d~~g~t~L~~A~~~~~~~i~  241 (255)
T d1oy3d_         215 GAD----PTARMYGGRTPLGSALLRPNPILA  241 (255)
T ss_dssp             TCC----TTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             CCC----CCCCCCCCCCHHHHHHHCCCHHHH
Confidence            999    999999999999999999998877


No 11 
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.85  E-value=3.3e-22  Score=173.69  Aligned_cols=161  Identities=16%  Similarity=0.234  Sum_probs=133.3

Q ss_pred             HHHHHHHhCCCCCcc-ccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHH---------
Q 016455            2 ELARFLIRRDTSWEI-TDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIE---------   68 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~-~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~---------   68 (389)
                      |+|++|+++|+|+|. .|.   .+.+|||+|+..|..+   +|+++|+++|.+|..+.++++.++..++.+         
T Consensus         3 ~~v~~Ll~~g~din~~~d~---~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDK---TGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHCCCCcCcCcCC---CCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence            899999999999997 475   5568899999888765   899999999999999999999888665433         


Q ss_pred             -------------------------HHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCccccccccccc
Q 016455           69 -------------------------IVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDN  123 (389)
Q Consensus        69 -------------------------~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~  123 (389)
                                               ..+.|. ..+.+++.+|..|+||||.|+.+++.++++.+++.+.+    ++.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~----~~~~d~  154 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLI-TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN----RDAQDD  154 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHH-HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----TTCCCT
T ss_pred             ccccccccccccccccccccccchhhhhhhh-hhcccccccCCCCCCcchhhcccCcceeeeeecccccc----cccccc
Confidence                                     333344 67788899999999999999999999999999999988    899999


Q ss_pred             CCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          124 GGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       124 ~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      +|+||||+|+..|+.++++      +++..      .       ..++.+|.+|+||+|+|++.+.
T Consensus       155 ~g~TpL~~A~~~g~~~~v~------~Ll~~------g-------ad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         155 KDETPLFLAAREGSYEASK------ALLDN------F-------ANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             TCCCHHHHHHHTTCHHHHH------HHHHT------T-------CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccchhccccHHHHHH------HHHHC------C-------CCCCCcCCCCCCHHHHHHHcCC
Confidence            9999999999999988771      11111      0       1157889999999999998754


No 12 
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85  E-value=1.7e-21  Score=161.34  Aligned_cols=133  Identities=16%  Similarity=0.243  Sum_probs=120.2

Q ss_pred             CHHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            1 MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      .|+++.|+++|+|+|.+|.   .+.+|||.|+ .+..+   .|+++|++++.++..|.+|++.++..++.+.++.++ .+
T Consensus        14 ~~~v~~Ll~~g~d~n~~d~---~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~-~~   88 (156)
T d1ihba_          14 LEQLTSLLQNNVNVNAQNG---FGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EF   88 (156)
T ss_dssp             HHHHHHHTTSCCCTTCCCT---TSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HT
T ss_pred             HHHHHHHHHCCCCcCccCC---cccccccccc-cccccccccccccccccccccccCcccccccccccccccccccc-cc
Confidence            3789999999999999997   4567888775 45554   889999999999999999999999999999999999 78


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +.+++..|..|.+|+|+|+..++.+++++|++++..   +.+.+|.+|+||||+|++.++.+++
T Consensus        89 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~---~~~~~d~~g~TpL~~A~~~~~~~iv  149 (156)
T d1ihba_          89 QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACDLARLYGRNEVV  149 (156)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccc---cccccCCCCCCHHHHHHHcCCHHHH
Confidence            889999999999999999999999999999998862   2899999999999999999998776


No 13 
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.84  E-value=7.1e-22  Score=173.66  Aligned_cols=162  Identities=20%  Similarity=0.225  Sum_probs=126.2

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC-
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY-   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~-   77 (389)
                      ++++.+...|+++|.+|.   .+.||||+|+..+..+   .|+++|+|++.+|..|.||||.|+..|+.++++.+++.. 
T Consensus        20 ~li~~~~~~~~~in~~d~---~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~   96 (221)
T d1iknd_          20 EVIRQVKGDLAFLNFQNN---LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT   96 (221)
T ss_dssp             CCCC-----CCCCCCCCT---TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             HHHHHHHhCCCCcccCCC---CCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcc
Confidence            456778889999999987   5558899988887655   788999999999999999999999999999999998432 


Q ss_pred             ----CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccc-cCCcccchhccccCCCcccccCCChhHHhh
Q 016455           78 ----PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKID-NGGNTLLHMTGIKRSDYVPEKMEGPALVLQ  152 (389)
Q Consensus        78 ----~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d-~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~  152 (389)
                          ....+....+|+||||.|+..++.++++++++.|..    ++.++ .+|+||||+|++.|+.++++      +++.
T Consensus        97 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~----~~~~~~~~G~T~L~~A~~~g~~~~v~------~Ll~  166 (221)
T d1iknd_          97 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD----VNAQEPCNGRTALHLAVDLQNPDLVS------LLLK  166 (221)
T ss_dssp             TTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC----TTCCCTTTCCCHHHHHHHTTCHHHHH------HHHT
T ss_pred             cccccccccccccccchhhhHHhhcCChhheeeecccCcc----cccccccCCCCccccccccccHHHHH------HHHh
Confidence                122344556789999999999999999999999887    66554 67999999999999987762      1111


Q ss_pred             HHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          153 EELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      .             ...++.+|.+|+||+|+|.+.+.
T Consensus       167 ~-------------gad~~~~~~~G~tpl~~A~~~~~  190 (221)
T d1iknd_         167 C-------------GADVNRVTYQGYSPYQLTWGRPS  190 (221)
T ss_dssp             T-------------TCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             c-------------CCcccccCCCCCCHHHHHHHCCC
Confidence            1             11257899999999999987643


No 14 
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}
Probab=99.83  E-value=2.8e-21  Score=174.83  Aligned_cols=130  Identities=13%  Similarity=0.160  Sum_probs=105.1

Q ss_pred             HHHHhCCCCCccccccCCCCcHHHHHccCCCCh---hhHhhcCCCCCcCCCCCCcHHHHHHHcCcH--------------
Q 016455            5 RFLIRRDTSWEITDSFQDQSKPKIHRYGANPNA---SSVDQKGIGESSANDNAETPLFLATKSGCI--------------   67 (389)
Q Consensus         5 ~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~---~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~--------------   67 (389)
                      +.++++|+|||.+|.   .+.||||+|+..+..   ++|+++|+|++.+|.+|.||+|+|+..|+.              
T Consensus        58 ~~~l~~Gadvn~~d~---~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~  134 (277)
T d2fo1e1          58 KECIAAGADVNAMDC---DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG  134 (277)
T ss_dssp             HHHHHTCCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred             hHHHHcCCCccccCC---CCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccc
Confidence            456788888888886   455677777766654   478888888888887777777776655544              


Q ss_pred             ------------------------------------------------------------------HHHHHHHHHCCCCc
Q 016455           68 ------------------------------------------------------------------EIVKEIFNVYPQAV   81 (389)
Q Consensus        68 ------------------------------------------------------------------~~v~~Ll~~~~~~~   81 (389)
                                                                                        ++++.++...+.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~  214 (277)
T d2fo1e1         135 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK  214 (277)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred             cccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccc
Confidence                                                                              34444444567777


Q ss_pred             cccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           82 EHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        82 ~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +.+|..|+||||+|++.|+.+++++|+++|++    +|.+|.+|+||||+|++.|+.+++
T Consensus       215 ~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad----in~~d~~G~T~L~~A~~~~~~~iv  270 (277)
T d2fo1e1         215 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS----VEAVDATDHTARQLAQANNHHNIV  270 (277)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----SSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC----CCCcCCCCCCHHHHHHHcCCHHHH
Confidence            88899999999999999999999999999999    999999999999999999998877


No 15 
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.83  E-value=6.4e-21  Score=167.83  Aligned_cols=114  Identities=19%  Similarity=0.151  Sum_probs=88.2

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccch
Q 016455           51 NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH  130 (389)
Q Consensus        51 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh  130 (389)
                      +..+.||++.++..++.++++.|+ ..+.+.+..|..|+||||+|+.+|+.+++++|++.+..   .+|.+|.+|+||||
T Consensus       102 ~~~~~~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~---~in~~d~~g~TpLh  177 (229)
T d1ixva_         102 TNQGVTCLHLAVGKKWFEVSQFLI-ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS---AVNWQDKQGWTPLF  177 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC---CSCCCCTTSCCHHH
T ss_pred             ccccccccccccccchhhhhhhhh-hhcccccccCCCCCCccchhhhcccccccccccccccc---cccccccccCCchh
Confidence            344555555666666777777777 67778888999999999999999999999999998743   38999999999999


Q ss_pred             hccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhh
Q 016455          131 MTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       131 ~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~  186 (389)
                      +|++.++.+++      ..++..            ....++.+|++|+||+|+|.+
T Consensus       178 ~A~~~~~~~~v------~~Ll~~------------~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         178 HALAEGHGDAA------VLLVEK------------YGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             HHHHTTCHHHH------HHHHHH------------HCCCSCCCCTTSCCTGGGCSC
T ss_pred             hhcccccHHHH------HHHHHh------------cCCCCCCcCCCCCCHHHHHhh
Confidence            99999987776      111110            001257899999999999875


No 16 
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.83  E-value=7.1e-22  Score=156.48  Aligned_cols=108  Identities=22%  Similarity=0.220  Sum_probs=94.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccc
Q 016455           55 ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus        55 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~  134 (389)
                      .|||++|+++|+.++++.|+ +.|++++.+|.+|+||||+|+.+|+.+++++|+++|++    +|.+|.+|+||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll-~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d----in~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD----INAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-TTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT----TTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHH-Hhhhccccccccccccccccccccccccccccccccce----eeecccccccchhhhhh
Confidence            48999999999999999999 78999999999999999999999999999999999998    99999999999999999


Q ss_pred             cCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhh
Q 016455          135 KRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       135 ~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~  186 (389)
                      .++.+++      .++++.+             ..++.+|++|+||+|++..
T Consensus        78 ~~~~~~v------~~Ll~~G-------------ad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          78 EGHVSCV------KLLLSKG-------------ADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TTCCHHH------HHHHTTC-------------CCSSSSSSSTCCCCCTCSS
T ss_pred             cCchhhh------hhhhccc-------------ccceeeCCCCCCHHHHHhH
Confidence            9998877      2221111             1157889999999998843


No 17 
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.82  E-value=2.4e-21  Score=160.67  Aligned_cols=114  Identities=15%  Similarity=0.207  Sum_probs=98.2

Q ss_pred             CCcHHHHHccCCCChh---hHhhcCCCCCcC------CCCCCcHHHHHHHc---CcHHHHHHHHHHCCCCccccccCCCh
Q 016455           23 QSKPKIHRYGANPNAS---SVDQKGIGESSA------NDNAETPLFLATKS---GCIEIVKEIFNVYPQAVEHIDDEGRN   90 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~------d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t   90 (389)
                      ..++.++.|...+.+.   .++..|+|++..      +..|+||||+|++.   |+.+++++|+ ++|++++.+|.+|+|
T Consensus         5 ~~l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll-~~gadin~~d~~g~T   83 (154)
T d1dcqa1           5 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQTGKGST   83 (154)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH-HHCSCTTCCCTTCCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHH-HcCCChhhhhhhhcc
Confidence            4456677777777776   445678887644      67799999999974   6789999999 678999999999999


Q ss_pred             HHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           91 ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        91 ~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |||+|++.|+.+++++|+++|++    ++.+|.+|+||||+|++.++.+++
T Consensus        84 pLh~A~~~~~~~~v~~Ll~~gad----~~~~d~~g~tpL~~A~~~~~~~i~  130 (154)
T d1dcqa1          84 ALHYCCLTDNAECLKLLLRGKAS----IEIANESGETPLDIAKRLKHEHCE  130 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccccccccccCcc----ccccCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999998    999999999999999999988777


No 18 
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.82  E-value=7.8e-21  Score=156.81  Aligned_cols=131  Identities=18%  Similarity=0.218  Sum_probs=117.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++||++|++++ .|.   .+.+|||+|+..+..+   .+.......+..+..+.+++|.++...+.+.++.++ ..+
T Consensus        16 ~~v~~LL~~ga~~~-~~~---~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~   90 (153)
T d1awcb_          16 DEVRILMANGAPFT-TDW---LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KHG   90 (153)
T ss_dssp             HHHHHHHHHTCCCC-CCT---TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-TTT
T ss_pred             HHHHHHHHcCCCcc-ccc---CCCccccccccccccccccccccccccccccccccccccccccccccceeeeccc-ccC
Confidence            78999999999987 454   5567899998877766   556666777777888999999999999999999998 788


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      .+.+.+|.+|+||||+|+..|+.+++++|++.|++    ++.+|.+|+||||+|+.+|+.+++
T Consensus        91 ~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad----~~~~d~~g~Tpl~~A~~~g~~eiv  149 (153)
T d1awcb_          91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD----VHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CccccccccCchHHHhhhhcchhheeeeccccccC----CcccCCCCCCHHHHHHHcCCHHHH
Confidence            89999999999999999999999999999999999    999999999999999999998876


No 19 
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82  E-value=7.8e-21  Score=157.33  Aligned_cols=140  Identities=20%  Similarity=0.239  Sum_probs=120.2

Q ss_pred             HHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChH
Q 016455           26 PKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        26 ~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~  102 (389)
                      .+||.|+..|.++   .|+++|+|+|.+|.+|.||||+|+ .|+.+++++|+ +.+++++.++.+|.++++.++.+++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll-~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccc-ccccccccccccCcccccccccccccc
Confidence            5799999888776   889999999999999999999886 79999999999 788999999999999999999999999


Q ss_pred             HHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHH
Q 016455          103 IFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEE  182 (389)
Q Consensus       103 iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~  182 (389)
                      .++.+++.+.+    ++..|..|.+|||+|++.++.+++      ...++.            .....+.+|++|+||+|
T Consensus        81 ~~~~l~~~~~~----~~~~~~~~~~~l~~a~~~~~~~~~------~~Ll~~------------~~~~~~~~d~~g~TpL~  138 (156)
T d1ihba_          81 TLQTLLEFQAD----VNIEDNEGNLPLHLAAKEGHLRVV------EFLVKH------------TASNVGHRNHKGDTACD  138 (156)
T ss_dssp             HHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH------HHHHHH------------SCCCTTCCCTTSCCHHH
T ss_pred             ccccccccccc----cccccccccccccccccccccccc------cccccc------------ccccccccCCCCCCHHH
Confidence            99999999988    899999999999999999887665      111110            01124788999999999


Q ss_pred             HHhhhhh
Q 016455          183 LFATANN  189 (389)
Q Consensus       183 la~~~~~  189 (389)
                      +|.+.+.
T Consensus       139 ~A~~~~~  145 (156)
T d1ihba_         139 LARLYGR  145 (156)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9987643


No 20 
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.82  E-value=1.8e-21  Score=179.49  Aligned_cols=155  Identities=17%  Similarity=0.184  Sum_probs=111.3

Q ss_pred             hCCCCCccc-cccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcH---HHHHHHHHHCCCCc
Q 016455            9 RRDTSWEIT-DSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCI---EIVKEIFNVYPQAV   81 (389)
Q Consensus         9 ~~ga~vn~~-d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~---~~v~~Ll~~~~~~~   81 (389)
                      ..+.|+|.. |.   .+.+|||+|+..|..+   +|+++|+|++.+|..|+||||.|+..++.   +.++.+++....++
T Consensus        94 ~~~~dvn~~~D~---~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~  170 (301)
T d1sw6a_          94 NTQLNLNIPVDE---HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL  170 (301)
T ss_dssp             TSCCCSCSCCST---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG
T ss_pred             ccCCCcCcCcCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhh
Confidence            457788865 64   4557899999888765   88999999999999999999999987752   22233333334567


Q ss_pred             cccccCCChHHHHHHHhCCh----H--------HHHHHHccCCc---------------------------------ccc
Q 016455           82 EHIDDEGRNILHVAIKYRQL----E--------IFELVVQMEVP---------------------------------MRR  116 (389)
Q Consensus        82 ~~~d~~G~t~Lh~A~~~~~~----~--------iv~~Ll~~g~~---------------------------------~~~  116 (389)
                      +.+|..|+||||+++..+..    .        +++.+.+.+..                                 ...
T Consensus       171 ~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  250 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc
Confidence            88899999999999875542    2        23333333221                                 011


Q ss_pred             cccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHh
Q 016455          117 LVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFA  185 (389)
Q Consensus       117 ~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~  185 (389)
                      .+|.+|.+|+||||+|++.|+.+++      .++++.+.             .++.+|++|+||+|+|+
T Consensus       251 ~in~~D~~G~TpLh~A~~~g~~~iv------~~Ll~~GA-------------d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         251 MLNAQDSNGDTCLNIAARLGNISIV------DALLDYGA-------------DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHH------HHHHHTTC-------------CTTCCCTTSCCGGGGTC
T ss_pred             CccCCCCCCCCHHHHHHHcCCHHHH------HHHHHCCC-------------CCCCCCCCCCCHHHHcC
Confidence            3688999999999999999998887      22222111             15889999999999885


No 21 
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.81  E-value=2e-20  Score=162.20  Aligned_cols=132  Identities=13%  Similarity=0.083  Sum_probs=114.1

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCC-------------------------------------CChhhHhhcC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGAN-------------------------------------PNASSVDQKG   44 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~-------------------------------------~~~~~Ll~~g   44 (389)
                      |++++|+++|+++|..+..+.+.   ++.+...                                     ...+.|.+.|
T Consensus        37 e~v~~Ll~~g~~~n~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  113 (209)
T d1ot8a_          37 DAAKRLLDAGADANSQDNTGRTP---LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD  113 (209)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCH---HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTT
T ss_pred             HHHHHHHhhcccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence            78999999999999888654432   2211111                                     1112577789


Q ss_pred             CCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccC
Q 016455           45 IGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNG  124 (389)
Q Consensus        45 a~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~  124 (389)
                      ++++.+|..|.||||.++..|..++++.++ ..+.+++..|.+|+||||+|+.+|+.+++++|+++|++    ++.+|.+
T Consensus       114 ~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~-~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad----~n~~d~~  188 (209)
T d1ot8a_         114 ADINAADNSGKTALHWAAAVNNTEAVNILL-MHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN----REITDHM  188 (209)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTT
T ss_pred             ccccccCCCCCCcchhhcccCcceeeeeec-cccccccccccccccccchhccccHHHHHHHHHHCCCC----CCCcCCC
Confidence            999999999999999999999999999999 77889999999999999999999999999999999999    9999999


Q ss_pred             CcccchhccccCCCccc
Q 016455          125 GNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       125 G~TpLh~A~~~~~~~~~  141 (389)
                      |+||||+|+++|+.+++
T Consensus       189 g~Tpl~~A~~~~~~~iv  205 (209)
T d1ot8a_         189 DRLPRDVASERLHHDIV  205 (209)
T ss_dssp             SCCHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHcCCHHHH
Confidence            99999999999998877


No 22 
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.81  E-value=1.1e-20  Score=156.87  Aligned_cols=137  Identities=18%  Similarity=0.192  Sum_probs=116.7

Q ss_pred             HHHHccCCCChh---hHh-hcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChH
Q 016455           27 KIHRYGANPNAS---SVD-QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        27 ~lh~a~~~~~~~---~Ll-~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~  102 (389)
                      .||.|+..|.++   .|+ +.|+++|.+|..|+||||+|+ .|+.+++++|+ ..+.+++..+.+|.+|++.++..++.+
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll-~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccc-ccccccccccccccccccccccccccc
Confidence            388888888776   445 468999999999999999986 58899999999 778899999999999999999999999


Q ss_pred             HHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHH
Q 016455          103 IFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEE  182 (389)
Q Consensus       103 iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~  182 (389)
                      +++.++++|++    +|.+|.+|+||||+|++.++.++++      +++       +       ...++.+|.+|+||+|
T Consensus        83 ~~~~~l~~~~~----~n~~~~~~~t~L~~A~~~~~~~i~~------~L~-------~-------~~~~~~~d~~G~TpL~  138 (156)
T d1bd8a_          83 TLKVLVEHGAD----VNVPDGTGALPIHLAVQEGHTAVVS------FLA-------A-------ESDLHRRDARGLTPLE  138 (156)
T ss_dssp             HHHHHHHTTCC----SCCCCTTSCCHHHHHHHHTCHHHHH------HHH-------T-------TSCTTCCCTTSCCHHH
T ss_pred             ccccccccccc----cccccCCCCeeeccccccccccccc------ccc-------c-------cccccccCCCCCCHHH
Confidence            99999999998    9999999999999999999877661      110       0       1125788999999999


Q ss_pred             HHhhhhh
Q 016455          183 LFATANN  189 (389)
Q Consensus       183 la~~~~~  189 (389)
                      +|.+.+.
T Consensus       139 ~A~~~g~  145 (156)
T d1bd8a_         139 LALQRGA  145 (156)
T ss_dssp             HHHHSCC
T ss_pred             HHHHcCC
Confidence            9987654


No 23 
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.80  E-value=4.6e-20  Score=175.95  Aligned_cols=164  Identities=18%  Similarity=0.218  Sum_probs=128.7

Q ss_pred             HHHHHHHhCCCCCccccccCCC------------------------------CcHHHHHccCCCChh---hHhhcCCCCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQ------------------------------SKPKIHRYGANPNAS---SVDQKGIGES   48 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~------------------------------~~~~lh~a~~~~~~~---~Ll~~ga~~n   48 (389)
                      +++++|+++|+++|..+..+.+                              +.+++|.|+..+..+   .+.+.+.+.+
T Consensus       179 ~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~  258 (408)
T d1n11a_         179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN  258 (408)
T ss_dssp             HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             HHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccc
Confidence            5788999999998877654332                              122344444333332   5556677888


Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCccc
Q 016455           49 SANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTL  128 (389)
Q Consensus        49 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~Tp  128 (389)
                      ..|..|.||+|.|++.++.+++++|+ +.|++++..+..+.||||.|+..++.++++++++.|++    +|.+|.+|+||
T Consensus       259 ~~~~~g~~~l~~a~~~~~~~i~~~Ll-~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~----in~~d~~G~T~  333 (408)
T d1n11a_         259 LGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD----VNAKTKLGYSP  333 (408)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC----TTCCCTTSCCH
T ss_pred             cccCCCCChhhhhhhcCcHHHHHHHH-HCCCccccccccccccchhhcccCcceeeeeecccccc----ccccCCCCCCH
Confidence            88889999999999999999999999 67889999999999999999999999999999999988    99999999999


Q ss_pred             chhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       129 Lh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      ||+|++.|+.+++      .+++..+.             .++.+|++|+||+|+|.+.+.
T Consensus       334 Lh~A~~~g~~~iv------~~Ll~~GA-------------d~n~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         334 LHQAAQQGHTDIV------TLLLKNGA-------------SPNEVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             HHHHHHTTCHHHH------HHHHHTTC-------------CSCCCCSSSCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHH------HHHHHCCC-------------CCCCCCCCCCCHHHHHHHcCC
Confidence            9999999988776      22221111             157899999999999988744


No 24 
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.80  E-value=5.8e-20  Score=151.46  Aligned_cols=139  Identities=16%  Similarity=0.116  Sum_probs=118.3

Q ss_pred             HHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChH
Q 016455           26 PKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        26 ~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~  102 (389)
                      +|||.|+..|..+   .|+++|++++ .|..|+||||+|+..++.++++.++ ..+...+..+..+.+++|.++...+.+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccc-cccccccccccccccccccccccccce
Confidence            6789898887765   8999999987 6899999999999999999999998 666667778889999999999999999


Q ss_pred             HHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHH
Q 016455          103 IFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEE  182 (389)
Q Consensus       103 iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~  182 (389)
                      +++++.+.+++    .+.+|.+|+||||+|+..++.+++      .+.+..      .       ..++.+|++|+||+|
T Consensus        82 ~~~~l~~~~~~----~~~~~~~g~T~L~~A~~~g~~~iv------~~ll~~------g-------ad~~~~d~~g~Tpl~  138 (153)
T d1awcb_          82 IVEVLLKHGAD----VNAKDMLKMTALHWATEHNHQEVV------ELLIKY------G-------ADVHTQSKFCKTAFD  138 (153)
T ss_dssp             HHHHHHTTTCC----TTCCCTTSCCHHHHHHHTTCHHHH------HHHHHT------T-------CCTTCCCTTSCCHHH
T ss_pred             eeecccccCCc----cccccccCchHHHhhhhcchhhee------eecccc------c-------cCCcccCCCCCCHHH
Confidence            99999999988    899999999999999999987776      111111      0       115778999999999


Q ss_pred             HHhhhhh
Q 016455          183 LFATANN  189 (389)
Q Consensus       183 la~~~~~  189 (389)
                      +|++.+.
T Consensus       139 ~A~~~g~  145 (153)
T d1awcb_         139 ISIDNGN  145 (153)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9997654


No 25 
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79  E-value=1e-19  Score=145.39  Aligned_cols=103  Identities=15%  Similarity=0.149  Sum_probs=90.7

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCC---hhhHhhcCCCCCcCCCCCC-cHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPN---ASSVDQKGIGESSANDNAE-TPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~---~~~Ll~~ga~~n~~d~~G~-tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      |++++|+++|+|+|.+|.++   .+++|.+. .+.   +++|+++|+++|.+|..|. ||||+|++.|+.+++++|+ +.
T Consensus        17 ~~v~~Ll~~gad~n~~~~~g---~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll-~~   91 (125)
T d1bi7b_          17 EEVRALLEAGANPNAPNSYG---RRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RA   91 (125)
T ss_dssp             HHHHHHHTTTCCTTCCCSSS---CCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH-HH
T ss_pred             HHHHHHHHcCCccccccccc---cccccccc-ccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            78999999999999999744   45566543 454   4489999999999998876 6999999999999999999 56


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ  109 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  109 (389)
                      |++++.+|.+|+||||+|+++|+.+++++|+.
T Consensus        92 ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          92 GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            89999999999999999999999999999975


No 26 
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79  E-value=4.2e-20  Score=176.20  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=119.6

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.+++.+.+.+..+..   +.+++|.++..+..+   +|+++|++++..+..+.||||.++..++.++++.++ ..|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~---g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll-~~g  320 (408)
T d1n11a_         245 EMVALLLSKQANGNLGNKS---GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL-QHQ  320 (408)
T ss_dssp             HHHHHHHTTTCCTTCCCTT---CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH-HTT
T ss_pred             hHhhhhhccccccccccCC---CCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeec-ccc
Confidence            5678889999998888864   446677776666544   889999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ++++.+|.+|+||||+|+++|+.+++++|+++|++    +|.+|.+|+||||+|++.|+.+++
T Consensus       321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd----~n~~d~~G~t~L~~A~~~~~~~iv  379 (408)
T d1n11a_         321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS----PNEVSSDGTTPLAIAKRLGYISVT  379 (408)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999    999999999999999999998776


No 27 
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79  E-value=6.3e-20  Score=159.00  Aligned_cols=154  Identities=14%  Similarity=0.115  Sum_probs=108.5

Q ss_pred             hCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC-------
Q 016455            9 RRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP-------   78 (389)
Q Consensus         9 ~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~-------   78 (389)
                      +.|+++|..|.+   +.+|||.|+..+..+   .|+++|++.+..+..|.++++.|...++.++++.+.....       
T Consensus        28 ~~g~~in~~d~~---g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  104 (228)
T d1k1aa_          28 QGGRELDIYNNL---RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE  104 (228)
T ss_dssp             HTTCCSCCCCTT---SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT
T ss_pred             HCCCCCCccCCC---CCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcccccccccc
Confidence            577777777753   345677776666544   6777777777777777777777777776666655543210       


Q ss_pred             ------------------------------CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCccc
Q 016455           79 ------------------------------QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTL  128 (389)
Q Consensus        79 ------------------------------~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~Tp  128 (389)
                                                    ......+..|.++||.|+..+..++++.+++.|.+    .+.+|.+|+||
T Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~----~~~~d~~g~t~  180 (228)
T d1k1aa_         105 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN----VNAQMYSGSSA  180 (228)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCBCTTSCBH
T ss_pred             ccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc----cccccccCcch
Confidence                                          11122334678889999999999999999988877    88999999999


Q ss_pred             chhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhh
Q 016455          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       129 Lh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      ||+|++.|+.+++      .++++.+             ..++.+|.+|+||+|+|.+++
T Consensus       181 L~~A~~~g~~~~v------~~Ll~~G-------------ad~n~~d~~G~TpL~~A~~~~  221 (228)
T d1k1aa_         181 LHSASGRGLLPLV------RTLVRSG-------------ADSSLKNCHNDTPLMVARSRR  221 (228)
T ss_dssp             HHHHHHHTCHHHH------HHHHHTT-------------CCTTCCCTTSCCTTTTCSSHH
T ss_pred             HHHHHHcCCHHHH------HHHHHCC-------------CCCCCCCCCCCCHHHHHHhCC
Confidence            9999999887766      1111111             115788999999999998654


No 28 
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77  E-value=4.9e-19  Score=153.27  Aligned_cols=132  Identities=15%  Similarity=0.148  Sum_probs=106.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh----------------------------------------hHh
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS----------------------------------------SVD   41 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~----------------------------------------~Ll   41 (389)
                      |++++|+++|+++|..+..+...   ++.+...+..+                                        .|.
T Consensus        54 ~iv~~Ll~~ga~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  130 (228)
T d1k1aa_          54 SVVRLLVTAGASPMALDRHGQTA---AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL  130 (228)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCH---HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccc---cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhh
Confidence            78999999999999888754433   33222221111                                        223


Q ss_pred             hcCCCC-CcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccc
Q 016455           42 QKGIGE-SSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK  120 (389)
Q Consensus        42 ~~ga~~-n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~  120 (389)
                      ....+. ...+..|.+|+|.|+..+..++++.++ ..+.+.+.+|..|+||||+|+.+|+.+++++|+++|++    +|.
T Consensus       131 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad----~n~  205 (228)
T d1k1aa_         131 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD----SSL  205 (228)
T ss_dssp             HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----TTC
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhhhh-hhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCC----CCC
Confidence            334443 344567999999999999999999999 78899999999999999999999999999999999999    999


Q ss_pred             cccCCcccchhccccCCCccc
Q 016455          121 IDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       121 ~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +|.+|+||||+|+++++.+++
T Consensus       206 ~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         206 KNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             CCTTSCCTTTTCSSHHHHHHH
T ss_pred             CCCCCCCHHHHHHhCCCcccc
Confidence            999999999999998876654


No 29 
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77  E-value=7.7e-19  Score=159.13  Aligned_cols=165  Identities=18%  Similarity=0.154  Sum_probs=115.0

Q ss_pred             CHHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCc----------------------------
Q 016455            1 MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESS----------------------------   49 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~----------------------------   49 (389)
                      +|++++|+++|+|+|.++.  ..+.+|||+|+..+..+   .|++.|.+.+.                            
T Consensus        18 ~e~vk~Ll~~G~din~~~~--~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (285)
T d1wdya_          18 VDLVQQLLEGGANVNFQEE--EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG   95 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCCT--TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCCcCccCC--CCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhc
Confidence            3789999999999997764  35678899888877644   44443332211                            


Q ss_pred             ------------------------------------------------CCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCc
Q 016455           50 ------------------------------------------------ANDNAETPLFLATKSGCIEIVKEIFNVYPQAV   81 (389)
Q Consensus        50 ------------------------------------------------~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   81 (389)
                                                                      .+..|.||||+|+++|+.++++.|++..++++
T Consensus        96 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i  175 (285)
T d1wdya_          96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV  175 (285)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT
T ss_pred             ccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc
Confidence                                                            12346777777777777777777776667777


Q ss_pred             cccccCCChHHHHHHHhC----ChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHH
Q 016455           82 EHIDDEGRNILHVAIKYR----QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLW  157 (389)
Q Consensus        82 ~~~d~~G~t~Lh~A~~~~----~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~  157 (389)
                      +..|..|.++.+.+...+    ..+++++|+++|++    ++.+|.+|+||||.|++.++.++++      +.+.     
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~----~n~~~~~g~t~L~~a~~~~~~~~v~------~lL~-----  240 (285)
T d1wdya_         176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD----VNVRGERGKTPLILAVEKKHLGLVQ------RLLE-----  240 (285)
T ss_dssp             TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC----SSCCCTTSCCHHHHHHHTTCHHHHH------HHHH-----
T ss_pred             ccccCCCCcccccccccccchHHHHHHHHHHHCCCC----CCccCCCCCCccchhhhcCcHHHHH------HHHH-----
Confidence            777777777766655433    24577777777777    7888999999999999988866551      1110     


Q ss_pred             HHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          158 YERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       158 ~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                             .....++.+|.+|.||+|+|++.+.
T Consensus       241 -------~~g~din~~d~~G~TpL~~A~~~~~  265 (285)
T d1wdya_         241 -------QEHIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             -------SSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             -------cCCCCCcCCCCCCCCHHHHHHHcCC
Confidence                   0111267889999999999998653


No 30 
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77  E-value=9.6e-19  Score=158.48  Aligned_cols=118  Identities=15%  Similarity=0.243  Sum_probs=104.6

Q ss_pred             HHHHHHHhC-CCCCccccccCCCCcHHHHHccCCCCh----hhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHH
Q 016455            2 ELARFLIRR-DTSWEITDSFQDQSKPKIHRYGANPNA----SSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 e~v~~Ll~~-ga~vn~~d~~~~~~~~~lh~a~~~~~~----~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      |++++|+++ |+++|..+..+.........++..+..    +.|+++|++++.+|.+|.||||+|++.|+.+++++|++.
T Consensus       162 ~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            678899964 899999998776666666666666544    378999999999999999999999999999999999977


Q ss_pred             CCCCccccccCCChHHHHHHHhCChHHHHHHHccCCccccccccccc
Q 016455           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDN  123 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~  123 (389)
                      +|.+++.+|.+|+||||+|+++|+.+++++|+++|++    +|.+|.
T Consensus       242 ~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd----~n~~d~  284 (285)
T d1wdya_         242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TDCGDL  284 (285)
T ss_dssp             SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC----SCCSSC
T ss_pred             CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCcccC
Confidence            8999999999999999999999999999999999999    998874


No 31 
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.76  E-value=7.2e-19  Score=154.13  Aligned_cols=132  Identities=20%  Similarity=0.243  Sum_probs=111.1

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCCh---hhHhhcCCCC------CcCCCCCCcHHHHHHHcCcHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNA---SSVDQKGIGE------SSANDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~---~~Ll~~ga~~------n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      +++++|+++|+|++..|..   +.+|+|.++..+..   +.|++.+.+.      +....+|.||||.|+..|+.++++.
T Consensus        53 ~iv~~L~~~g~d~~~~d~~---g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  129 (221)
T d1iknd_          53 EIAEALLGAGCDPELRDFR---GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL  129 (221)
T ss_dssp             HHHHCCCSCCCCSCCCCTT---CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ccccccccccccccccccc---cccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheee
Confidence            6889999999999999874   44678877766654   4677766554      2345678999999999999999999


Q ss_pred             HHHHCCCCcccc-ccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           73 IFNVYPQAVEHI-DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        73 Ll~~~~~~~~~~-d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ++ ..+..++.. +.+|+||||+|++.|+.+++++|+++|++    ++.+|.+|+||||+|++.++.+++
T Consensus       130 l~-~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad----~~~~~~~G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         130 LV-SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             HH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             ec-ccCcccccccccCCCCccccccccccHHHHHHHHhcCCc----ccccCCCCCCHHHHHHHCCCHHHH
Confidence            99 556666655 46899999999999999999999999999    999999999999999999887766


No 32 
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.75  E-value=2.8e-18  Score=150.61  Aligned_cols=130  Identities=18%  Similarity=0.199  Sum_probs=110.9

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh--------------------------------------hHhhc
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS--------------------------------------SVDQK   43 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~--------------------------------------~Ll~~   43 (389)
                      |++++|+++|+++|..+..+..+.+++|.+...+..+                                      .|++.
T Consensus        48 ~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  127 (229)
T d1ixva_          48 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN  127 (229)
T ss_dssp             HHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence            7899999999999877766666666666444332211                                      46678


Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHc-cCCcccccccccc
Q 016455           44 GIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ-MEVPMRRLVRKID  122 (389)
Q Consensus        44 ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~d  122 (389)
                      |.+.+.+|.+|+||||+|+..|+.++++.|++..+.+++.+|.+|+||||+|+++|+.+++++|++ .|++    ++.+|
T Consensus       128 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad----~~~~d  203 (229)
T d1ixva_         128 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE----YDLVD  203 (229)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC----SCCCC
T ss_pred             cccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC----CCCcC
Confidence            888889999999999999999999999999966668899999999999999999999999999996 5898    99999


Q ss_pred             cCCcccchhcccc
Q 016455          123 NGGNTLLHMTGIK  135 (389)
Q Consensus       123 ~~G~TpLh~A~~~  135 (389)
                      .+|+||||+|+..
T Consensus       204 ~~g~t~l~~A~~~  216 (229)
T d1ixva_         204 NKGAKAEDVALNE  216 (229)
T ss_dssp             TTSCCTGGGCSCH
T ss_pred             CCCCCHHHHHhhH
Confidence            9999999999853


No 33 
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.75  E-value=4e-18  Score=140.89  Aligned_cols=110  Identities=12%  Similarity=0.041  Sum_probs=93.3

Q ss_pred             HHHHHHhCCCCCccccc---cCCCCcHHHHHccC---CCC---hhhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHH
Q 016455            3 LARFLIRRDTSWEITDS---FQDQSKPKIHRYGA---NPN---ASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEI   73 (389)
Q Consensus         3 ~v~~Ll~~ga~vn~~d~---~~~~~~~~lh~a~~---~~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~L   73 (389)
                      .+..++..|+|++....   ....+.+|||.|+.   .+.   +++|+++|+|+|.+|.+|+||||+|+..|+.+++++|
T Consensus        21 ~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~L  100 (154)
T d1dcqa1          21 GLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL  100 (154)
T ss_dssp             HHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccc
Confidence            45667788988775521   12356788998874   343   4589999999999999999999999999999999999


Q ss_pred             HHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCc
Q 016455           74 FNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVP  113 (389)
Q Consensus        74 l~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~  113 (389)
                      + +.|++++.+|.+|+||||+|+++|+.+++++|++.++.
T Consensus       101 l-~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         101 L-RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             H-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             c-ccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9 78999999999999999999999999999999987654


No 34 
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.75  E-value=1e-18  Score=160.76  Aligned_cols=125  Identities=10%  Similarity=0.076  Sum_probs=97.7

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCC------ChhhHhh-cCCCCCcCCCCCCcHHHHHHHcCc----HHH-
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANP------NASSVDQ-KGIGESSANDNAETPLFLATKSGC----IEI-   69 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~------~~~~Ll~-~ga~~n~~d~~G~tpLh~Aa~~g~----~~~-   69 (389)
                      |++++|+++|+|++.+|.   .+.+|||.|+..+      .++.+++ .+.+++.+|..|+||||+++..+.    ... 
T Consensus       121 ~~v~~Ll~~gad~~~~d~---~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~  197 (301)
T d1sw6a_         121 ELVKHLVKHGSNRLYGDN---MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA  197 (301)
T ss_dssp             HHHHHHHHTTCCTTBCCT---TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHHHCCCCCCcCCc---ccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHHHHhCccccHHHH
Confidence            789999999999999997   4557888887644      3333433 245567889999999999886543    222 


Q ss_pred             -------HHHHHHHCCC------------------------------------CccccccCCChHHHHHHHhCChHHHHH
Q 016455           70 -------VKEIFNVYPQ------------------------------------AVEHIDDEGRNILHVAIKYRQLEIFEL  106 (389)
Q Consensus        70 -------v~~Ll~~~~~------------------------------------~~~~~d~~G~t~Lh~A~~~~~~~iv~~  106 (389)
                             ++.+++....                                    .+|.+|.+|+||||+|+++|+.+++++
T Consensus       198 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~  277 (301)
T d1sw6a_         198 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA  277 (301)
T ss_dssp             HHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHH
Confidence                   2333322111                                    168889999999999999999999999


Q ss_pred             HHccCCcccccccccccCCcccchhcc
Q 016455          107 VVQMEVPMRRLVRKIDNGGNTLLHMTG  133 (389)
Q Consensus       107 Ll~~g~~~~~~~~~~d~~G~TpLh~A~  133 (389)
                      |+++|++    ++.+|++|.||||+|+
T Consensus       278 Ll~~GAd----~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         278 LLDYGAD----PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHTTCC----TTCCCTTSCCGGGGTC
T ss_pred             HHHCCCC----CCCCCCCCCCHHHHcC
Confidence            9999999    9999999999999997


No 35 
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=99.74  E-value=3.7e-18  Score=155.37  Aligned_cols=112  Identities=19%  Similarity=0.209  Sum_probs=103.1

Q ss_pred             cHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCCh
Q 016455           25 KPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL  101 (389)
Q Consensus        25 ~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~  101 (389)
                      .++||.|+..|+++   .|+++|+|+|.+|.+|.||||+|+.+|+.+++++|+ +.+.+.+..+..+.+|||.|+..++.
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll-~~~~~~~~~~~~~~~~L~~a~~~~~~  119 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAASCGYL  119 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeec-cccccccccccccccccccccccccc
Confidence            47799999888776   889999999999999999999999999999999999 77888889999999999999999999


Q ss_pred             HHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455          102 EIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       102 ~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ++++.|++.|+.    .+.+|.+|.+|+++|+..++.+..
T Consensus       120 ~~~~~l~~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~  155 (291)
T d1s70b_         120 DIAEYLISQGAH----VGAVNSEGDTPLDIAEEEAMEELL  155 (291)
T ss_dssp             HHHHHHHHTTCC----TTCCCTTSCCHHHHCCSHHHHHHH
T ss_pred             chhhcccccCcc----cccccccCccccccccccccchhc
Confidence            999999999988    889999999999999987776554


No 36 
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.74  E-value=1.2e-18  Score=139.99  Aligned_cols=106  Identities=12%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |+++.|+++|+|+|.+|.   .+.+|||.|+..+..+   .|+++|+++|.+|.+|+||||+|+.+|+.+++++|+ ++|
T Consensus        15 ~~v~~Ll~~g~d~n~~d~---~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~g   90 (130)
T d1ycsb1          15 DLVQRIIYEVDDPSLPND---EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV-ESG   90 (130)
T ss_dssp             HHHHHHTSTTSSCCCCCT---TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCcccccc---ccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHH-HcC
Confidence            789999999999999997   4557888888777654   889999999999999999999999999999999999 789


Q ss_pred             CCcccccc-CCChHHHHH--HHhCChHHHHHHHccC
Q 016455           79 QAVEHIDD-EGRNILHVA--IKYRQLEIFELVVQME  111 (389)
Q Consensus        79 ~~~~~~d~-~G~t~Lh~A--~~~~~~~iv~~Ll~~g  111 (389)
                      ++++.++. +|+|+++++  +++|+.+++++|++.+
T Consensus        91 a~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          91 AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             CCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99998775 588887765  5778999999998753


No 37 
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}
Probab=99.72  E-value=6.7e-20  Score=172.23  Aligned_cols=138  Identities=7%  Similarity=-0.016  Sum_probs=107.1

Q ss_pred             HHHHHHhCCCCCcccc--------ccCCCCcHHHHHccCCCChh------hHhhcCCCCCcCCCCCCcHHHHHHHcCcHH
Q 016455            3 LARFLIRRDTSWEITD--------SFQDQSKPKIHRYGANPNAS------SVDQKGIGESSANDNAETPLFLATKSGCIE   68 (389)
Q Consensus         3 ~v~~Ll~~ga~vn~~d--------~~~~~~~~~lh~a~~~~~~~------~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~   68 (389)
                      +.+.|...+++.+..+        ..+..+.++||.|+..|+.+      .|+++|+++|.+|.+|+||||+||++|+.+
T Consensus        61 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~  140 (346)
T d2ajaa1          61 VRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH  140 (346)
T ss_dssp             HHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHH
Confidence            4455555554444332        12235678899999998753      478899999999999999999999999999


Q ss_pred             HHHHHHHHCCCCccccc--cCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccc
Q 016455           69 IVKEIFNVYPQAVEHID--DEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPE  142 (389)
Q Consensus        69 ~v~~Ll~~~~~~~~~~d--~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~  142 (389)
                      +|++|+ +.|++++..|  .+|+||||+|+++|+.+++++|++.|++ ....+..+.+|.||+|.|+.+|+.++++
T Consensus       141 ~v~~Ll-~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~~~~~t~l~~A~~~g~~~iv~  214 (346)
T d2ajaa1         141 VLNRLC-ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVIN  214 (346)
T ss_dssp             HHHHHH-HSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             HHHHHH-HcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCc-ccccccccCCCcchhhHHhhcCHHHHHH
Confidence            999999 7788888776  4699999999999999999999999875 1223556677889999999999998884


No 38 
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}
Probab=99.68  E-value=5.7e-19  Score=165.78  Aligned_cols=108  Identities=9%  Similarity=0.090  Sum_probs=87.5

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCC--CCCCcHHHHHHHcCcHHHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSAN--DNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d--~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      |+++.|++.|+++|..|.   .+.+|||.|+..|+.+   +|+++|++++..|  .+|.||||+|+++|+.+++++|+ +
T Consensus       107 ~~~~~L~~~~~~in~~~~---~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll-~  182 (346)
T d2ajaa1         107 DTLCLLLTSDEIVKVIQA---ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC-E  182 (346)
T ss_dssp             HHHTTC--CCSSCC--CH---HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHH-H
T ss_pred             HHHHHHHhCCCcccccCC---CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHH-H
Confidence            345568999999999997   5568899999998866   8999999998765  46999999999999999999999 5


Q ss_pred             CCCCc---cccccCCChHHHHHHHhCChHHHHHHHccCCc
Q 016455           77 YPQAV---EHIDDEGRNILHVAIKYRQLEIFELVVQMEVP  113 (389)
Q Consensus        77 ~~~~~---~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~  113 (389)
                      .+.+.   +..+.+|.||+|.|+++|+.+++++|++.|++
T Consensus       183 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         183 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             cCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence            55443   44556778889999999999999999999876


Done!