BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016456
         (389 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S-
           Adenosylmethionine-dependent Radical Enzyme
 pdb|1R30|B Chain B, The Crystal Structure Of Biotin Synthase, An S-
           Adenosylmethionine-dependent Radical Enzyme
          Length = 369

 Score = 31.2 bits (69), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 322 SSTIDIKVGAHFK--KWCVMQSKIKTGAVNEYKKEVELMLETARSYIKTRTSG 372
           S+ + IK GA  +  K+C   S+ KTG   E   EVE +LE+AR   K + +G
Sbjct: 66  STLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESAR---KAKAAG 115


>pdb|2WB8|A Chain A, Crystal Structure Of Haspin Kinase
          Length = 352

 Score = 28.9 bits (63), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 220 LFSDDSTFTNE-YRAARKDTNLVMGQWHAADEY-------DGQVREITFRSLCNSP 267
           LF+ D  +  + YR  +K+ N   G++H            D  ++++TF++ CN+P
Sbjct: 264 LFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTP 319


>pdb|3DLZ|A Chain A, Crystal Structure Of Human Haspin In Complex With Amp
 pdb|3E7V|A Chain A, Crystal Structure Of Human Haspin With A
           Pyrazolo-Pyrimidine Ligand
 pdb|3F2N|A Chain A, Crystal Structure Of Human Haspin With An
           Imidazo-Pyridazine Ligand
 pdb|3FMD|A Chain A, Crystal Structure Of Human Haspin With An Isoquinoline
           Ligand
 pdb|3IQ7|A Chain A, Crystal Structure Of Human Haspin In Complex With
           5-Iodotubercidin
          Length = 357

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 220 LFSDDSTFTNE-YRAARKDTNLVMGQWHAADEY-------DGQVREITFRSLCNSP 267
           LF+ D  +  + YR  +K+ N   G++H            D  ++++TF++ CN+P
Sbjct: 269 LFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTP 324


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,981,186
Number of Sequences: 62578
Number of extensions: 434456
Number of successful extensions: 768
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 3
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)