Query 016456
Match_columns 389
No_of_seqs 182 out of 837
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:01:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 1.5E-37 3.3E-42 320.5 16.7 319 26-365 105-441 (590)
2 PF02893 GRAM: GRAM domain; I 99.7 6.8E-18 1.5E-22 127.7 6.5 67 28-94 1-69 (69)
3 smart00568 GRAM domain in gluc 99.6 3.9E-16 8.3E-21 115.1 6.9 59 35-93 1-60 (61)
4 KOG1032 Uncharacterized conser 99.1 6.3E-11 1.4E-15 123.4 6.1 280 18-314 241-526 (590)
5 KOG4347 GTPase-activating prot 98.2 8.5E-07 1.8E-11 91.1 3.7 106 22-146 5-114 (671)
6 PF14470 bPH_3: Bacterial PH d 97.6 0.0013 2.9E-08 52.1 12.2 70 36-106 1-72 (96)
7 PF14844 PH_BEACH: PH domain a 97.5 0.00016 3.6E-09 59.0 5.4 66 42-107 2-83 (106)
8 PF10698 DUF2505: Protein of u 95.6 1.5 3.2E-05 38.4 18.8 149 206-365 4-158 (159)
9 cd01201 Neurobeachin Neurobeac 95.3 0.07 1.5E-06 43.5 6.7 89 40-144 1-104 (108)
10 PF11605 Vps36_ESCRT-II: Vacuo 94.1 0.35 7.5E-06 38.2 7.8 62 36-97 10-77 (89)
11 cd08868 START_STARD1_3_like Ch 92.4 4.2 9.1E-05 37.0 13.7 121 205-336 52-180 (208)
12 cd08871 START_STARD10-like Lip 91.3 8.3 0.00018 35.4 14.4 50 287-336 122-175 (222)
13 PF01852 START: START domain; 90.9 5.4 0.00012 35.7 12.6 148 205-365 50-203 (206)
14 cd08876 START_1 Uncharacterize 89.9 14 0.0003 32.9 15.3 145 204-365 44-193 (195)
15 cd08869 START_RhoGAP C-termina 89.0 9.2 0.0002 34.6 12.4 118 205-336 48-170 (197)
16 cd00177 START Lipid-binding ST 88.8 15 0.00033 32.0 13.9 122 204-336 42-167 (193)
17 smart00234 START in StAR and p 88.8 17 0.00037 32.5 15.0 79 285-364 120-202 (206)
18 cd08905 START_STARD1-like Chol 88.2 20 0.00044 32.7 14.6 146 205-361 53-205 (209)
19 cd08870 START_STARD2_7-like Li 86.7 25 0.00053 32.0 14.1 148 206-364 55-208 (209)
20 cd08904 START_STARD6-like Lipi 86.6 20 0.00044 32.7 13.1 141 204-359 49-200 (204)
21 cd08907 START_STARD8-like C-te 86.6 7.7 0.00017 35.5 10.1 52 285-336 124-178 (205)
22 PF06115 DUF956: Domain of unk 85.9 8.4 0.00018 31.9 9.0 66 42-108 9-76 (118)
23 cd05018 CoxG Carbon monoxide d 84.2 22 0.00047 29.3 15.8 72 288-366 72-143 (144)
24 smart00683 DM16 Repeats in sea 83.9 5.2 0.00011 28.6 6.1 52 40-92 1-54 (55)
25 PF08567 TFIIH_BTF_p62_N: TFII 83.4 5.5 0.00012 30.6 6.7 52 57-108 13-66 (79)
26 PF07289 DUF1448: Protein of u 82.9 10 0.00022 37.3 9.7 100 35-150 150-255 (339)
27 PF00407 Bet_v_1: Pathogenesis 81.4 35 0.00075 29.5 12.7 142 204-369 7-151 (151)
28 cd07821 PYR_PYL_RCAR_like Pyra 81.2 28 0.0006 28.3 13.4 108 204-334 4-112 (140)
29 KOG4471 Phosphatidylinositol 3 80.7 7 0.00015 41.0 8.0 104 26-144 26-134 (717)
30 PF11696 DUF3292: Protein of u 78.4 6.3 0.00014 41.9 7.1 84 44-145 519-634 (642)
31 cd08908 START_STARD12-like C-t 77.8 32 0.00069 31.5 10.8 119 205-336 56-177 (204)
32 cd08913 START_STARD14-like Lip 75.2 74 0.0016 29.9 12.9 41 289-329 161-205 (240)
33 cd08909 START_STARD13-like C-t 75.1 44 0.00096 30.6 10.9 117 206-336 57-178 (205)
34 cd08872 START_STARD11-like Cer 74.2 67 0.0014 30.0 12.2 79 288-368 136-230 (235)
35 cd08906 START_STARD3-like Chol 71.9 80 0.0017 28.8 15.8 148 204-362 52-206 (209)
36 cd08874 START_STARD9-like C-te 71.5 82 0.0018 28.8 12.9 117 205-334 49-176 (205)
37 PF06017 Myosin_TH1: Myosin ta 70.0 78 0.0017 28.5 11.4 88 9-96 14-111 (199)
38 cd08867 START_STARD4_5_6-like 67.0 97 0.0021 27.9 14.3 150 204-366 49-205 (206)
39 cd08873 START_STARD14_15-like 66.2 1.2E+02 0.0025 28.5 12.8 117 205-332 81-203 (235)
40 PF06713 bPH_4: Bacterial PH d 64.2 42 0.0009 25.2 7.0 63 62-144 5-72 (74)
41 PF04283 CheF-arch: Chemotaxis 57.9 12 0.00026 34.7 3.7 36 54-93 24-59 (221)
42 PF07289 DUF1448: Protein of u 57.4 62 0.0013 31.9 8.5 103 36-151 19-130 (339)
43 cd08910 START_STARD2-like Lipi 57.3 1.5E+02 0.0033 26.9 14.4 142 206-360 54-202 (207)
44 PF03703 bPH_2: Bacterial PH d 55.3 79 0.0017 23.2 7.4 48 59-107 5-56 (80)
45 cd08911 START_STARD7-like Lipi 53.8 1.7E+02 0.0037 26.5 15.5 145 207-363 51-205 (207)
46 cd07823 SRPBCC_5 Ligand-bindin 50.9 1.5E+02 0.0032 24.8 12.6 61 301-366 82-144 (146)
47 cd08903 START_STARD5-like Lipi 50.2 2E+02 0.0043 26.1 15.4 147 205-362 50-205 (208)
48 COG4687 Uncharacterized protei 48.2 63 0.0014 26.6 5.8 76 53-145 20-96 (122)
49 cd08861 OtcD1_ARO-CYC_like N-t 42.7 1.9E+02 0.004 23.7 10.1 32 305-336 82-113 (142)
50 PRK10724 hypothetical protein; 42.5 1.1E+02 0.0024 26.6 7.1 27 308-334 98-124 (158)
51 cd07818 SRPBCC_1 Ligand-bindin 40.7 1.1E+02 0.0024 25.4 6.8 58 307-366 91-148 (150)
52 cd07813 COQ10p_like Coenzyme Q 39.9 1.3E+02 0.0028 24.7 7.1 28 308-335 82-109 (138)
53 PF04707 PRELI: PRELI-like fam 36.8 2.8E+02 0.006 24.0 13.0 77 275-355 61-140 (157)
54 PF03517 Voldacs: Regulator of 36.8 50 0.0011 28.0 3.9 48 58-107 1-52 (135)
55 PF08512 Rtt106: Histone chape 36.3 2.1E+02 0.0046 22.5 8.1 72 56-146 11-85 (95)
56 cd01244 PH_RasGAP_CG9209 RAS_G 35.9 1.4E+02 0.0031 23.8 6.2 46 60-106 26-73 (98)
57 cd08866 SRPBCC_11 Ligand-bindi 35.5 2E+02 0.0043 23.6 7.5 50 308-358 88-138 (144)
58 cd08877 START_2 Uncharacterize 33.0 3.7E+02 0.008 24.2 11.8 122 203-336 48-186 (215)
59 KOG3238 Chloride ion current i 31.7 72 0.0016 28.9 4.1 25 47-71 25-49 (216)
60 KOG3294 WW domain binding prot 29.3 40 0.00087 31.5 2.2 49 55-103 46-95 (261)
61 PF15436 PGBA_N: Plasminogen-b 28.6 47 0.001 30.7 2.5 55 304-359 164-218 (218)
62 PF05391 Lsm_interact: Lsm int 28.3 18 0.00039 20.5 -0.1 14 21-34 6-19 (21)
63 PF04386 SspB: Stringent starv 27.3 92 0.002 27.1 4.1 36 57-92 66-101 (155)
64 COG2867 Oligoketide cyclase/li 25.3 1.7E+02 0.0037 25.3 5.2 28 308-335 86-113 (146)
65 cd07817 SRPBCC_8 Ligand-bindin 25.2 2.5E+02 0.0054 22.6 6.3 27 308-334 80-106 (139)
66 PHA02122 hypothetical protein 25.2 64 0.0014 23.0 2.1 41 27-67 18-63 (65)
67 PF00169 PH: PH domain; Inter 24.2 3E+02 0.0065 20.4 6.8 51 56-107 18-77 (104)
68 cd08860 TcmN_ARO-CYC_like N-te 23.4 3.4E+02 0.0073 23.0 6.9 28 306-334 86-113 (146)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=100.00 E-value=1.5e-37 Score=320.48 Aligned_cols=319 Identities=22% Similarity=0.345 Sum_probs=238.5
Q ss_pred ccccccccc--cccCCCeeeEEEEeeeeeccccceEEEeecCeeeEEeccCCceeEEEEecccceeeeeccccccc-CcE
Q 016456 26 KPGPLQTIF--NLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFIN-PAI 102 (389)
Q Consensus 26 ~~~~f~~lF--~lp~~E~Ll~~f~C~l~~~~~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~~~-~~i 102 (389)
...+|...+ ++|++|.|+.+|+|+|+|.+++|||||+++.||||||+++||+++++||+.+|+.|+|.++++++ ++|
T Consensus 105 ~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i 184 (590)
T KOG1032|consen 105 AGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAI 184 (590)
T ss_pred cchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcce
Confidence 344455555 38899999999999999999999999999999999999999999999999999999999999875 589
Q ss_pred EEEEecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHHHHHHHhhhh-hhhhhhhhhcccccCCC-CCcCCccccc
Q 016456 103 TIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRIAKNYHKML-EAEKKEKAESALRAHSS-SIRGSRRQAK 180 (389)
Q Consensus 103 ~I~~~~g~~~~~~~~~~~~~g~~~~~f~sf~~rd~~~~~l~~~~~~~~~~l-~~e~~~~~~s~l~~~ss-~~~gs~~~~~ 180 (389)
.|.+ ++.+|+|++|.+||.+|.++..+.+.....- .........+....+.. +..++. ++
T Consensus 185 ~i~t----------------~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~--~~ 246 (590)
T KOG1032|consen 185 EITT----------------GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNV--DN 246 (590)
T ss_pred EEec----------------CCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCccccccc--cc
Confidence 8884 2458999999999999997755443321100 00000000000000000 000000 00
Q ss_pred ccccc-----CCC------CCCCCCCccccccccccceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCC
Q 016456 181 IAEET-----VTK------PEKLQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAAD 249 (389)
Q Consensus 181 ~~e~~-----~~~------~~~~~~~~~e~~~~~v~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~ 249 (389)
.+.++ .+. ......... ...-++.+..+++++..+|.++|+| ..|+..+++.++..++...+|....
T Consensus 247 ~~~~s~~~~s~~~~~~e~~~~~~~~~~~-~~~~v~~~~~~s~~~~~~~~~lf~d-~~~~~~~l~~~~~~~vs~~~~~~~~ 324 (590)
T KOG1032|consen 247 SQSPSALQNSFDSPKEEELEHDFSCSLS-RLFGVLGRLPFSAPIGAFFSLLFGD-NTFFFFFLEDQDEIQVSPIPWKGPR 324 (590)
T ss_pred CCCccccccccCCCcccccccccccccc-ccccccccccccccccccceeeccC-cceeeeccccccccccccccccCCC
Confidence 00000 000 000111111 1123677889999999999999994 5577788999999999999999865
Q ss_pred CCCCeEEEEEEEEecCCCCCCCceeEeEEEEEEEcCCCCeEEEEEEeecCCCCCCCeEEEEEEEEEEecCCCceEEEEEE
Q 016456 250 EYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKV 329 (389)
Q Consensus 250 ~~~~~~R~ity~~~l~~~lgpk~t~~~e~Q~~~~~~d~~~~vv~~~~~~~dVPygd~F~v~~r~~it~~~~~~c~l~V~~ 329 (389)
. +...|.++|+.++..++|||++.|..+|.+.+..-..|+.|...+.+++|||++.|.|.+||+|+|.+++.|++.+++
T Consensus 325 ~-~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~~ 403 (590)
T KOG1032|consen 325 S-GILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVST 403 (590)
T ss_pred c-cceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeeccee
Confidence 4 678999999999999999999999999999876555679999999999999999999999999999999999999999
Q ss_pred eEEEeeeccchhhhhhch--HHHHHHHHHHHHHHHHhh
Q 016456 330 GAHFKKWCVMQSKIKTGA--VNEYKKEVELMLETARSY 365 (389)
Q Consensus 330 ~V~f~K~t~~K~~Ie~~~--~~~~k~~~~~~l~~~~k~ 365 (389)
+|.|.+++|.+.+++.++ .+.+-+.++.++..+++.
T Consensus 404 ~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~ 441 (590)
T KOG1032|consen 404 SVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEEL 441 (590)
T ss_pred EEEeccCchhhccccccccchhhHHHHHHHHHhccHHH
Confidence 999999999999998866 555666666666644433
No 2
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.73 E-value=6.8e-18 Score=127.68 Aligned_cols=67 Identities=33% Similarity=0.664 Sum_probs=48.4
Q ss_pred ccccccccccCCCeeeEEEEeeeee-ccccceEEEeecCeeeEEeccCCcee-EEEEecccceeeeecc
Q 016456 28 GPLQTIFNLLPDELVEHSYSCALER-SFLYHGRMYVSAWHICFHSNVFSKQM-KVIIPIGDIDEIRRSQ 94 (389)
Q Consensus 28 ~~f~~lF~lp~~E~Ll~~f~C~l~~-~~~~~Grlyit~~~lcFys~~~g~~~-~~~i~~~dI~~I~k~~ 94 (389)
+.||++|+||.+|.|+.+|.|+|.+ +++.+|+||||++||||+|+.+|..+ +++|||.||.+|+|.+
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 3699999999999999999999998 99999999999999999999999887 9999999999999863
No 3
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.64 E-value=3.9e-16 Score=115.13 Aligned_cols=59 Identities=39% Similarity=0.715 Sum_probs=56.5
Q ss_pred cccCCCeeeEEEEeeeeeccccceEEEeecCeeeEEeccCCcee-EEEEecccceeeeec
Q 016456 35 NLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQM-KVIIPIGDIDEIRRS 93 (389)
Q Consensus 35 ~lp~~E~Ll~~f~C~l~~~~~~~Grlyit~~~lcFys~~~g~~~-~~~i~~~dI~~I~k~ 93 (389)
+||++|.|+.+|.|+|.+.++.+||||||++||||+|+.+|+.+ +++||+.||.+|+|.
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 37899999999999999999999999999999999999999988 999999999999986
No 4
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.12 E-value=6.3e-11 Score=123.39 Aligned_cols=280 Identities=25% Similarity=0.341 Sum_probs=169.7
Q ss_pred CCCcccccccccccccccccCCCeeeEEEEeeeeeccccceEEEeecCeeeEEeccCCceeEEEEecccceeeeeccccc
Q 016456 18 QGPTVVHQKPGPLQTIFNLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAF 97 (389)
Q Consensus 18 ~~~~~~~~~~~~f~~lF~lp~~E~Ll~~f~C~l~~~~~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~ 97 (389)
+.+.+..+.+..|...|++|.+|.++.+|+|.+.+..+++|+++++-...+||+++||-.+.+...|.++..++......
T Consensus 241 ~~~~~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~ 320 (590)
T KOG1032|consen 241 QGNVDNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPW 320 (590)
T ss_pred ccccccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccc
Confidence 45577788999999999999999999999999999999999999999999999999999999999999999999987775
Q ss_pred ccCcEEEEEecCC---CC---CCCCCCCCCCCceEEEEeeecchHHHHHHHHHHHHHHhhhhhhhhhhhhhcccccCCCC
Q 016456 98 INPAITIILRMGA---GG---HGVPPLGSPDGRVRYKFASFWNRNHALRQLQRIAKNYHKMLEAEKKEKAESALRAHSSS 171 (389)
Q Consensus 98 ~~~~i~I~~~~g~---~~---~~~~~~~~~~g~~~~~f~sf~~rd~~~~~l~~~~~~~~~~l~~e~~~~~~s~l~~~ss~ 171 (389)
..+...+..+..+ |. +|+++-. ..+...+.+..+... ++.+...........+.......---...++.+
T Consensus 321 ~~~~~~~~~r~~~y~~~l~~~~gPk~t~-~~~~~~l~~~~~~~~---~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~ 396 (590)
T KOG1032|consen 321 KGPRSGILLRTLSYTKGLPAKSGPKSTD-CEGTQTLHHQDLEKY---FRVLSETLTPDVPSGDSFYVKTRYLISRAGSNS 396 (590)
T ss_pred cCCCccceeEeccCCccCCCcCCCcccc-ccceeeEEeccchhh---hhhhheeccCCccccceeeeeEEEEEEecCCcc
Confidence 4443222222222 22 3333321 123445555444432 455554433322211100000000000000000
Q ss_pred CcCCccccccccccCCCCCCCCCCccccccccccceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCC
Q 016456 172 IRGSRRQAKIAEETVTKPEKLQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEY 251 (389)
Q Consensus 172 ~~gs~~~~~~~e~~~~~~~~~~~~~~e~~~~~v~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~ 251 (389)
. ...+.... ...+ .... -.+..+.....++.++.+ .-+|+ +..-...-+...+...+.-.+|+ .+..
T Consensus 397 ~-----~l~v~~~V-~~~~--~sw~--~~~~~~~~~~~k~lv~~~-~~~~~-~~e~~~~~~~~~~~~~~~~~~~~-v~~~ 463 (590)
T KOG1032|consen 397 C-----KLKVSTSV-EWTK--SSWD--VPVSEIGSNTLKDLVEIL-EKLLE-NGEELAKNQEKEDELTYEGSPWE-VEKP 463 (590)
T ss_pred e-----eecceeEE-Eecc--Cchh--hccccccccchhhHHHHH-HHHHh-ccHHHHHhhcccccccccCCCcc-ccCC
Confidence 0 00000000 0000 0000 001112122334444444 33455 22222222222333344445899 6667
Q ss_pred CCeEEEEEEEEecCCCCCCCceeEeEEEEEEEcCCCCeEEEEEEeecCCCCCCCeEEEEEEEE
Q 016456 252 DGQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWH 314 (389)
Q Consensus 252 ~~~~R~ity~~~l~~~lgpk~t~~~e~Q~~~~~~d~~~~vv~~~~~~~dVPygd~F~v~~r~~ 314 (389)
++.+|...|.---..++++....+...|...+.++...+++++....+++|||++|.++.||.
T Consensus 464 ~~~v~~~~~~~~~~~~i~~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~ 526 (590)
T KOG1032|consen 464 GGTVRQLSYKEVWNKPISPDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR 526 (590)
T ss_pred CceeeeeccccccccccccccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh
Confidence 889999888865456688888888888888877776789999999999999999999999996
No 5
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=98.21 E-value=8.5e-07 Score=91.06 Aligned_cols=106 Identities=22% Similarity=0.338 Sum_probs=86.4
Q ss_pred ccccccccccccccccCCCeeeEEEEeeeee---ccccceEEEeecCeeeEEeccCCceeEEEEecccceeeeeccccc-
Q 016456 22 VVHQKPGPLQTIFNLLPDELVEHSYSCALER---SFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAF- 97 (389)
Q Consensus 22 ~~~~~~~~f~~lF~lp~~E~Ll~~f~C~l~~---~~~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~- 97 (389)
+.+.++++| .+|.|| |.|..+-.|.++. +...+||||+|++++||.|-..+ .+.+++|+..|.+|++.....
T Consensus 5 ~ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~ 80 (671)
T KOG4347|consen 5 DARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSL 80 (671)
T ss_pred hhhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCcccc
Confidence 356788899 999999 9999999998873 56789999999999999998775 589999999999999998443
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHHHH
Q 016456 98 INPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRIA 146 (389)
Q Consensus 98 ~~~~i~I~~~~g~~~~~~~~~~~~~g~~~~~f~sf~~rd~~~~~l~~~~ 146 (389)
+...|.+.++ +...+.|..+.+|+..+-.+....
T Consensus 81 ~~~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k~~~~~ 114 (671)
T KOG4347|consen 81 FTQLISLFTS---------------NMVGMRFGGLTERLKLLSKLHLPP 114 (671)
T ss_pred chhhhHHhhc---------------CcceEEecchhhHHHHHHHHhchH
Confidence 3446777764 345789999999998876665543
No 6
>PF14470 bPH_3: Bacterial PH domain
Probab=97.64 E-value=0.0013 Score=52.15 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=57.9
Q ss_pred ccCCCeeeEEEEeeeee-ccccceEEEeecCeeeEEecc-CCceeEEEEecccceeeeecccccccCcEEEEE
Q 016456 36 LLPDELVEHSYSCALER-SFLYHGRMYVSAWHICFHSNV-FSKQMKVIIPIGDIDEIRRSQHAFINPAITIIL 106 (389)
Q Consensus 36 lp~~E~Ll~~f~C~l~~-~~~~~Grlyit~~~lcFys~~-~g~~~~~~i~~~dI~~I~k~~~~~~~~~i~I~~ 106 (389)
|.+||.++....|.+.. .....|.+++|+++|.|+... +|......+||++|.+|+..++. +.+.|.|.+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~ 72 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET 72 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE
Confidence 56899999999998773 345779999999999999875 66678899999999999998665 346788877
No 7
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=97.53 E-value=0.00016 Score=58.98 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=49.1
Q ss_pred eeEEEEeeeee-ccccceEEEeecCeeeEEec---------------cCCceeEEEEecccceeeeecccccccCcEEEE
Q 016456 42 VEHSYSCALER-SFLYHGRMYVSAWHICFHSN---------------VFSKQMKVIIPIGDIDEIRRSQHAFINPAITII 105 (389)
Q Consensus 42 Ll~~f~C~l~~-~~~~~Grlyit~~~lcFys~---------------~~g~~~~~~i~~~dI~~I~k~~~~~~~~~i~I~ 105 (389)
++.++.|.+.. .....|+|.||+++|+|..+ .........+|+.||..|-+..-.+-..||+|.
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF 81 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIF 81 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEE
Confidence 56789999986 45689999999999999876 223345678999999999987554444599999
Q ss_pred Ee
Q 016456 106 LR 107 (389)
Q Consensus 106 ~~ 107 (389)
+.
T Consensus 82 ~~ 83 (106)
T PF14844_consen 82 FS 83 (106)
T ss_dssp ET
T ss_pred Ec
Confidence 84
No 8
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.55 E-value=1.5 Score=38.36 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=95.3
Q ss_pred ceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecC-CC-----CCCCceeEeEEE
Q 016456 206 NDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCN-SP-----MCPPDTAMTEYQ 279 (389)
Q Consensus 206 ~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~-~~-----lgpk~t~~~e~Q 279 (389)
..+||+|++++|.+|.+ ..|+..-+...+..+..+..-...+ ++....+.=..|-. -| +-+..-.+.+++
T Consensus 4 ~~~~~~~~~~v~~~~~d--~~y~~~r~~~~g~~~~~~~~~~~~~--~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTD--EDYWEARCAALGADNAEVESFEVDG--DGVRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcC--HHHHHHHHHHcCCCCceEEEEEEcC--CeEEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 46899999999997654 4588877777777666666666543 23322232233321 11 223333455555
Q ss_pred EEEEcCCCCeEEEEEEeecCCCCCCCeEEEEEEEEEEecCCCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHHHHH
Q 016456 280 HAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELML 359 (389)
Q Consensus 280 ~~~~~~d~~~~vv~~~~~~~dVPygd~F~v~~r~~it~~~~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~~~l 359 (389)
+..... +..+..+.....+ |....+...+.++. ++.+|++.+...|.-. =.++-++||+.+.+...+.++.--
T Consensus 80 ~w~~~~-~g~~~g~~~~~~~----G~P~~~~G~~~L~~-~~~gt~~~~~g~v~v~-VPlvGgkiE~~v~~~~~~~~~~e~ 152 (159)
T PF10698_consen 80 TWTPLD-DGRRTGTFTVSIP----GAPVSISGTMRLRP-DGGGTRLTVEGEVKVK-VPLVGGKIEKAVAENLRKLLEAEQ 152 (159)
T ss_pred EEecCC-CCeEEEEEEEEec----CceEEEEEEEEEec-CCCCEEEEEEEEEEEE-EccccHHHHHHHHHHHHHHHHHHH
Confidence 553222 3345555544444 67789999999988 6667988888877542 247889999999888777777666
Q ss_pred HHHHhh
Q 016456 360 ETARSY 365 (389)
Q Consensus 360 ~~~~k~ 365 (389)
+.+.+.
T Consensus 153 ~~~~~w 158 (159)
T PF10698_consen 153 EFTAEW 158 (159)
T ss_pred HHHHhh
Confidence 665543
No 9
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=95.29 E-value=0.07 Score=43.50 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=62.7
Q ss_pred CeeeEEEEeeeee-ccccceEEEeecCeeeEEecc----C-Cc---------eeEEEEecccceeeeecccccccCcEEE
Q 016456 40 ELVEHSYSCALER-SFLYHGRMYVSAWHICFHSNV----F-SK---------QMKVIIPIGDIDEIRRSQHAFINPAITI 104 (389)
Q Consensus 40 E~Ll~~f~C~l~~-~~~~~Grlyit~~~lcFys~~----~-g~---------~~~~~i~~~dI~~I~k~~~~~~~~~i~I 104 (389)
|.++.+..|.+.. -.-..|++=||+.+|||.-.- + +. .....+++++|.+|-+..-.+-..|++|
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEi 80 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALEL 80 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEE
Confidence 5678889999985 455789999999999999521 1 11 1123789999999988765444559999
Q ss_pred EEecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHH
Q 016456 105 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR 144 (389)
Q Consensus 105 ~~~~g~~~~~~~~~~~~~g~~~~~f~sf~~rd~~~~~l~~ 144 (389)
... |+ .-.|-.|-+++.+-.++..
T Consensus 81 F~~--------------d~--~~~f~~F~~~~~~k~vv~~ 104 (108)
T cd01201 81 FLA--------------SR--TSIFFAFPDQNAVKKVVYA 104 (108)
T ss_pred EEe--------------CC--ceEEEEeCcHHHHHHHHhh
Confidence 984 33 2256678887776666554
No 10
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=94.05 E-value=0.35 Score=38.25 Aligned_cols=62 Identities=18% Similarity=0.332 Sum_probs=39.5
Q ss_pred ccCCCeee-EEEEeeeee---cc--ccceEEEeecCeeeEEeccCCceeEEEEecccceeeeeccccc
Q 016456 36 LLPDELVE-HSYSCALER---SF--LYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAF 97 (389)
Q Consensus 36 lp~~E~Ll-~~f~C~l~~---~~--~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~ 97 (389)
|.++|.++ ..-.+.|.. +. ...|++|+|.++||+.-..-.....+.+||.+|..++...+.+
T Consensus 10 L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~ 77 (89)
T PF11605_consen 10 LEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL 77 (89)
T ss_dssp --TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT
T ss_pred cCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc
Confidence 44566655 344455552 33 3589999999999998654443447899999999997765543
No 11
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=92.44 E-value=4.2 Score=37.00 Aligned_cols=121 Identities=12% Similarity=0.160 Sum_probs=60.6
Q ss_pred cceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCC-CCCcee-EeEEEEEE
Q 016456 205 YNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPM-CPPDTA-MTEYQHAV 282 (389)
Q Consensus 205 ~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~l-gpk~t~-~~e~Q~~~ 282 (389)
.+.+++++++.+|..++.|-. . ++.+|-.+...+.-+..+..++ +.|... +.+. +|-+.+ ....++..
T Consensus 52 ~~~~i~~~~~~v~~~l~~d~~-~-------~~~Wd~~~~~~~~i~~~d~~~~-i~y~~~-~~~~~~~vs~RDfV~~r~~~ 121 (208)
T cd08868 52 LTGVLDCPAEFLYNELVLNVE-S-------LPSWNPTVLECKIIQVIDDNTD-ISYQVA-AEAGGGLVSPRDFVSLRHWG 121 (208)
T ss_pred EEEEEcCCHHHHHHHHHcCcc-c-------cceecCcccceEEEEEecCCcE-EEEEEe-cCcCCCcccccceEEEEEEE
Confidence 356889999999998886532 1 2211211111111110111222 334321 1111 232222 22233333
Q ss_pred EcCCCCeEEEEEEeecCCCCCCCe-EE---EEEEEEEEecCC--CceEEEEEEeEEEeee
Q 016456 283 LSPDKKIFVFETVQQAHDVPFGSY-FE---IHCRWHLETISE--NSSTIDIKVGAHFKKW 336 (389)
Q Consensus 283 ~~~d~~~~vv~~~~~~~dVPygd~-F~---v~~r~~it~~~~--~~c~l~V~~~V~f~K~ 336 (389)
.. ++.++++......+..|-..- -+ ....|+|++.++ ++|.|...+.++..++
T Consensus 122 ~~-~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~ 180 (208)
T cd08868 122 IR-ENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW 180 (208)
T ss_pred ec-CCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC
Confidence 33 344444444434356664443 33 457899999854 7899998888888765
No 12
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=91.30 E-value=8.3 Score=35.44 Aligned_cols=50 Identities=8% Similarity=0.077 Sum_probs=36.8
Q ss_pred CCeEEEEEEeecCCCCCCCe-EE---EEEEEEEEecCCCceEEEEEEeEEEeee
Q 016456 287 KKIFVFETVQQAHDVPFGSY-FE---IHCRWHLETISENSSTIDIKVGAHFKKW 336 (389)
Q Consensus 287 ~~~~vv~~~~~~~dVPygd~-F~---v~~r~~it~~~~~~c~l~V~~~V~f~K~ 336 (389)
+.++++..+...+++|-..- -+ ....|+|++.++++|++...+.++..++
T Consensus 122 ~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~ 175 (222)
T cd08871 122 GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS 175 (222)
T ss_pred CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC
Confidence 55666666666678886554 22 3456899998888999999999988775
No 13
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=90.92 E-value=5.4 Score=35.73 Aligned_cols=148 Identities=12% Similarity=0.156 Sum_probs=82.7
Q ss_pred cceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCCCCCcee-EeEEEEEEE
Q 016456 205 YNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTA-MTEYQHAVL 283 (389)
Q Consensus 205 ~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~-~~e~Q~~~~ 283 (389)
...+++.++..++..++.+.. .+-......+ .+.... + + ..-+.+...... .+|-..+ ....+....
T Consensus 50 ~~~~v~~~~~~~~~~~~~~~~----~Wd~~~~~~~-~le~~~---~-~--~~i~~~~~~~~~-~~p~~~RDfv~~~~~~~ 117 (206)
T PF01852_consen 50 AEGVVPASPEQVVEDLLDDRE----QWDKMCVEAE-VLEQID---E-D--TDIVYFVMKSPW-PGPVSPRDFVFLRSWRK 117 (206)
T ss_dssp EEEEESSCHHHHHHHHHCGGG----HHSTTEEEEE-EEEEEE---T-T--EEEEEEEEE-CT-TTTSSEEEEEEEEEEEE
T ss_pred EEEEEcCChHHHHHHHHhhHh----hcccchhhhe-eeeecC---C-C--CeEEEEEecccC-CCCCCCcEEEEEEEEEE
Confidence 345788999988998887543 2211111101 011111 1 1 222222222212 1232223 222333333
Q ss_pred cCCCCeEEEEEEeecCCCCC--CCeEEEE---EEEEEEecCCCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHHHH
Q 016456 284 SPDKKIFVFETVQQAHDVPF--GSYFEIH---CRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELM 358 (389)
Q Consensus 284 ~~d~~~~vv~~~~~~~dVPy--gd~F~v~---~r~~it~~~~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~~~ 358 (389)
..++.++++..+...+..|- .++-+++ ..|+|++.+++.|++.....++...+. -+.++...+.....+.++.+
T Consensus 118 ~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i-P~~~~n~~~~~~~~~~~~~~ 196 (206)
T PF01852_consen 118 DEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI-PSWLVNMVVKSQPPNFLKNL 196 (206)
T ss_dssp CTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred eccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC-hHHHHHHHHHHhHHHHHHHH
Confidence 45666777777777787774 5555544 679999999999999999999887653 24444445555666666776
Q ss_pred HHHHHhh
Q 016456 359 LETARSY 365 (389)
Q Consensus 359 l~~~~k~ 365 (389)
.+.++++
T Consensus 197 ~~~~~~~ 203 (206)
T PF01852_consen 197 RKALKKQ 203 (206)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 6666654
No 14
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=89.88 E-value=14 Score=32.92 Aligned_cols=145 Identities=12% Similarity=0.090 Sum_probs=74.1
Q ss_pred ccceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEE-ecCCCCCCCceeEeEEEEEE
Q 016456 204 IYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRS-LCNSPMCPPDTAMTEYQHAV 282 (389)
Q Consensus 204 v~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~-~l~~~lgpk~t~~~e~Q~~~ 282 (389)
-...+++++++++|+++.. .+...+|........+ +... + .+ ..+.|.. ...-|+.+.. .....+..
T Consensus 44 k~~~~i~~s~e~v~~vi~d--~e~~~~w~~~~~~~~v-ie~~---~-~~---~~i~~~~~~~p~pvs~Rd--fv~~~~~~ 111 (195)
T cd08876 44 KAVAEVDASIEAFLALLRD--TESYPQWMPNCKESRV-LKRT---D-DN---ERSVYTVIDLPWPVKDRD--MVLRSTTE 111 (195)
T ss_pred EEEEEEeCCHHHHHHHHhh--hHhHHHHHhhcceEEE-eecC---C-CC---cEEEEEEEecccccCCce--EEEEEEEE
Confidence 4455789999999998763 3344444433222222 1111 1 11 1223322 1111122222 22222223
Q ss_pred EcCCCCeEEEEEEeecCCCCCCC----eEEEEEEEEEEecCCCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHHHH
Q 016456 283 LSPDKKIFVFETVQQAHDVPFGS----YFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELM 358 (389)
Q Consensus 283 ~~~d~~~~vv~~~~~~~dVPygd----~F~v~~r~~it~~~~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~~~ 358 (389)
...++..++|.......++|-.. .+.....|.|++.++++|+|.....+.+.. .+-+.+|...+... ...+
T Consensus 112 ~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g-~iP~~lv~~~~~~~----~~~~ 186 (195)
T cd08876 112 QDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGG-SIPGWLANAFAKDA----PYNT 186 (195)
T ss_pred EcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCC-CCCHHHHHHHHHHH----HHHH
Confidence 22223455555543333345332 356677899999999999999999998865 35566666554443 3344
Q ss_pred HHHHHhh
Q 016456 359 LETARSY 365 (389)
Q Consensus 359 l~~~~k~ 365 (389)
++.+++.
T Consensus 187 l~~l~~~ 193 (195)
T cd08876 187 LENLRKQ 193 (195)
T ss_pred HHHHHHh
Confidence 4444443
No 15
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=88.98 E-value=9.2 Score=34.58 Aligned_cols=118 Identities=12% Similarity=0.153 Sum_probs=62.8
Q ss_pred cceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCCCCCceeEeEEEEEEEc
Q 016456 205 YNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLS 284 (389)
Q Consensus 205 ~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~~~e~Q~~~~~ 284 (389)
...+++.++++++.+++.. ++.+|-.+..++..+.-+....-+.|..+..-|+.+..- |.........
T Consensus 48 ~~~~v~a~~~~v~~~l~d~-----------r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDf-V~~r~~~~~~ 115 (197)
T cd08869 48 ASTEVEAPPEEVLQRILRE-----------RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDY-VVLRTWRTDL 115 (197)
T ss_pred EEEEeCCCHHHHHHHHHHH-----------HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceE-EEEEEEEecC
Confidence 3567899999999987631 233344333333322111122233344432222322221 2221122223
Q ss_pred CCCCeEEEEEEee-c-CCCCCCC---eEEEEEEEEEEecCCCceEEEEEEeEEEeee
Q 016456 285 PDKKIFVFETVQQ-A-HDVPFGS---YFEIHCRWHLETISENSSTIDIKVGAHFKKW 336 (389)
Q Consensus 285 ~d~~~~vv~~~~~-~-~dVPygd---~F~v~~r~~it~~~~~~c~l~V~~~V~f~K~ 336 (389)
.++. |+|..... . ..+|= + .+.....|+|++.++++|+|...++++..++
T Consensus 116 ~~g~-~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 116 PKGA-CVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGR 170 (197)
T ss_pred CCCc-EEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence 3443 44434333 2 24554 4 3556688999999889999999999988774
No 16
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=88.83 E-value=15 Score=32.00 Aligned_cols=122 Identities=14% Similarity=0.188 Sum_probs=64.3
Q ss_pred ccceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCCCCCceeEeEEEEEEE
Q 016456 204 IYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVL 283 (389)
Q Consensus 204 v~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~~~e~Q~~~~ 283 (389)
-...++++|+++++.+|+..+ ....+-... .+.. .-...+.+.......|..| .|+.|..--+.. ....
T Consensus 42 k~~~~i~~~~~~v~~~l~d~~--~~~~w~~~~--~~~~---vl~~~~~~~~i~~~~~~~p--~p~~~Rdfv~~~--~~~~ 110 (193)
T cd00177 42 KAEGVIPASPEQVFELLMDID--LRKKWDKNF--EEFE---VIEEIDEHTDIIYYKTKPP--WPVSPRDFVYLR--RRRK 110 (193)
T ss_pred EEEEEECCCHHHHHHHHhCCc--hhhchhhcc--eEEE---EEEEeCCCeEEEEEEeeCC--CccCCccEEEEE--EEEE
Confidence 346688999999999887522 222221111 1111 1111111112222233333 234444432222 2222
Q ss_pred cCCCCeEEEEEEeecCCCCCC-CeEEEEE---EEEEEecCCCceEEEEEEeEEEeee
Q 016456 284 SPDKKIFVFETVQQAHDVPFG-SYFEIHC---RWHLETISENSSTIDIKVGAHFKKW 336 (389)
Q Consensus 284 ~~d~~~~vv~~~~~~~dVPyg-d~F~v~~---r~~it~~~~~~c~l~V~~~V~f~K~ 336 (389)
..++.++++..+...+.+|-. ++-+.+. -|+|.+.++++|++.....++...+
T Consensus 111 ~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 111 LDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred cCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence 234566666555544445654 5555554 3899999889999999999988764
No 17
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=88.76 E-value=17 Score=32.52 Aligned_cols=79 Identities=13% Similarity=0.152 Sum_probs=49.9
Q ss_pred CCCCeEEEEEEeecCCCCC-CCe---EEEEEEEEEEecCCCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHHHHHH
Q 016456 285 PDKKIFVFETVQQAHDVPF-GSY---FEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLE 360 (389)
Q Consensus 285 ~d~~~~vv~~~~~~~dVPy-gd~---F~v~~r~~it~~~~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~~~l~ 360 (389)
.++.++++..+...+++|= ..+ ......|+|++.+++.|++.....++..++ +=+.++...........++.|.+
T Consensus 120 ~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~ 198 (206)
T smart00234 120 VDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVA 198 (206)
T ss_pred CCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHH
Confidence 4455555544555566662 333 345678999999988999999999998875 23455555455555555555554
Q ss_pred HHHh
Q 016456 361 TARS 364 (389)
Q Consensus 361 ~~~k 364 (389)
.+++
T Consensus 199 ~~~~ 202 (206)
T smart00234 199 TLQK 202 (206)
T ss_pred HHHH
Confidence 4443
No 18
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=88.18 E-value=20 Score=32.67 Aligned_cols=146 Identities=9% Similarity=0.050 Sum_probs=74.8
Q ss_pred cceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCCCCCcee-EeEEEEEEE
Q 016456 205 YNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTA-MTEYQHAVL 283 (389)
Q Consensus 205 ~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~-~~e~Q~~~~ 283 (389)
.+.+++++++.++..+|.|-... .++ +-++..-+....-+..+ .+.|......|+++=+.+ ....++...
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e~~-~~W-------~~~~~~~~vl~~id~~~-~i~y~~~~p~p~~~vs~RD~V~~~~~~~ 123 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRMEQM-GEW-------NPNVKEVKILQRIGKDT-LITHEVAAETAGNVVGPRDFVSVRCAKR 123 (209)
T ss_pred EEEEecCCHHHHHHHHHhchhhh-cee-------cccchHHHHHhhcCCCc-eEEEEEeccCCCCccCccceEEEEEEEE
Confidence 46689999999998888753211 111 11111111111111112 223322111222221222 223344444
Q ss_pred cCCCCeEEEEEEeecCCCCC-CCe---EEEEEEEEEEecCC--CceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHHH
Q 016456 284 SPDKKIFVFETVQQAHDVPF-GSY---FEIHCRWHLETISE--NSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVEL 357 (389)
Q Consensus 284 ~~d~~~~vv~~~~~~~dVPy-gd~---F~v~~r~~it~~~~--~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~~ 357 (389)
. ++.++++......+.+|= .++ ......|+|++.++ ++|+|...+.++..++ +=+.++.+...+...+.+..
T Consensus 124 ~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~~~ 201 (209)
T cd08905 124 R-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFANH 201 (209)
T ss_pred c-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHHHH
Confidence 3 344566655555555553 333 34567899999866 7899999998888765 33556665555555555544
Q ss_pred HHHH
Q 016456 358 MLET 361 (389)
Q Consensus 358 ~l~~ 361 (389)
+=+.
T Consensus 202 Lr~~ 205 (209)
T cd08905 202 LRQR 205 (209)
T ss_pred HHHH
Confidence 4433
No 19
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=86.70 E-value=25 Score=32.02 Aligned_cols=148 Identities=9% Similarity=0.103 Sum_probs=77.9
Q ss_pred ceEe-ecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCCCCCceeEeEEEEEEEc
Q 016456 206 NDVF-PCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLS 284 (389)
Q Consensus 206 ~~~~-~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~~~e~Q~~~~~ 284 (389)
..++ ++|++.|++++.. ..+-.++........+- +..+ ....+.+-+....--|+.+.. .....+....
T Consensus 55 ~~~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~~~~l----e~~~--~~~~~i~y~~~~~P~P~s~RD--~V~~r~~~~~ 124 (209)
T cd08870 55 RGVFEDCTPELLRDFYWD--DEYRKKWDETVIEHETL----EEDE--KSGTEIVRWVKKFPFPLSDRE--YVIARRLWES 124 (209)
T ss_pred EEEEcCCCHHHHHHHHcC--hhhHhhhhhheeeEEEE----EecC--CCCcEEEEEEEECCCcCCCce--EEEEEEEEEc
Confidence 4567 6899999998865 33433343322221111 1111 101233333333223343433 2222233333
Q ss_pred CCCCeEEEEEEeecCCCCCCCeEE---EEEEEEEEec--CCCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHHHHH
Q 016456 285 PDKKIFVFETVQQAHDVPFGSYFE---IHCRWHLETI--SENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELML 359 (389)
Q Consensus 285 ~d~~~~vv~~~~~~~dVPygd~F~---v~~r~~it~~--~~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~~~l 359 (389)
.++.++++......+.+|-.+.-+ ....|+|++. ++++|.+.+.+..+= +..+=+.++...+..+....++.|-
T Consensus 125 ~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~ 203 (209)
T cd08870 125 DDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKKLE 203 (209)
T ss_pred CCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHHHH
Confidence 345555555555556778653333 4578999998 677888877776653 3334455666666666666666665
Q ss_pred HHHHh
Q 016456 360 ETARS 364 (389)
Q Consensus 360 ~~~~k 364 (389)
+.+++
T Consensus 204 ~a~~~ 208 (209)
T cd08870 204 NALRK 208 (209)
T ss_pred HHHhc
Confidence 55544
No 20
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=86.63 E-value=20 Score=32.74 Aligned_cols=141 Identities=11% Similarity=0.106 Sum_probs=74.5
Q ss_pred ccceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEe--cccccCCCCCCeEEEEEEEEecCC--C-CCCCceeEeEE
Q 016456 204 IYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVM--GQWHAADEYDGQVREITFRSLCNS--P-MCPPDTAMTEY 278 (389)
Q Consensus 204 v~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~--~~W~~~~~~~~~~R~ity~~~l~~--~-lgpk~t~~~e~ 278 (389)
-++.+++++++.+|+.|+.... ++.+|-.+ ..+-..- +..+ .|.|..--.. + ++|.. ....
T Consensus 49 k~egvi~~~~e~v~~~l~~~e~---------r~~Wd~~~~~~~iie~I--d~~T-~I~~~~~~~~~~~~vspRD--fV~v 114 (204)
T cd08904 49 RVEGIIPESPAKLIQFMYQPEH---------RIKWDKSLQVYKMLQRI--DSDT-FICHTITQSFAMGSISPRD--FVDL 114 (204)
T ss_pred EEEEEecCCHHHHHHHHhccch---------hhhhcccccceeeEEEe--CCCc-EEEEEecccccCCcccCce--EEEE
Confidence 4466899999999999765211 12122222 2222211 1112 2344331111 1 44443 2233
Q ss_pred EEEEEcCCCCeEEEEEEeecCCCC-CCC---eEEEEEEEEEEecCC--CceEEEEEEeEEEeeeccchhhhhhchHHHHH
Q 016456 279 QHAVLSPDKKIFVFETVQQAHDVP-FGS---YFEIHCRWHLETISE--NSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYK 352 (389)
Q Consensus 279 Q~~~~~~d~~~~vv~~~~~~~dVP-ygd---~F~v~~r~~it~~~~--~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k 352 (389)
++.....++.+++...+...+..| -.+ .+..-+-|++.+.++ ++|+|..+.+++..++ +=+++|++..-..+.
T Consensus 115 r~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~-lP~~vv~~~~~~~~~ 193 (204)
T cd08904 115 VHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN-LSRSVIEKTMPTNLV 193 (204)
T ss_pred EEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC-CCHHHHHHHhHHHHH
Confidence 332222344445545555555544 233 444556799999865 4799999999877653 447888876666655
Q ss_pred HHHHHHH
Q 016456 353 KEVELML 359 (389)
Q Consensus 353 ~~~~~~l 359 (389)
+.+..+-
T Consensus 194 ~f~~~~~ 200 (204)
T cd08904 194 NLILDAK 200 (204)
T ss_pred HHHHHHH
Confidence 5555443
No 21
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=86.55 E-value=7.7 Score=35.46 Aligned_cols=52 Identities=8% Similarity=0.120 Sum_probs=44.3
Q ss_pred CCCCeEEEEEEeecCCCCCCC---eEEEEEEEEEEecCCCceEEEEEEeEEEeee
Q 016456 285 PDKKIFVFETVQQAHDVPFGS---YFEIHCRWHLETISENSSTIDIKVGAHFKKW 336 (389)
Q Consensus 285 ~d~~~~vv~~~~~~~dVPygd---~F~v~~r~~it~~~~~~c~l~V~~~V~f~K~ 336 (389)
+.+.++++..+..-+++|.-. .-...++|.|++.++++|+|.-.++|++.++
T Consensus 124 ~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 124 PRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred CCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 445788888888888888765 6677899999999999999999999999875
No 22
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=85.93 E-value=8.4 Score=31.91 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=47.4
Q ss_pred eeEEEEeeeeeccccceEEEeecCeeeEEeccCCceeEEEEecccceeeeecccc--cccCcEEEEEec
Q 016456 42 VEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHA--FINPAITIILRM 108 (389)
Q Consensus 42 Ll~~f~C~l~~~~~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~--~~~~~i~I~~~~ 108 (389)
+...-...+...+.-+|++.|-++-+=||.+-= .+--+.|||.+|..|...-.. ...+-..|.|+.
T Consensus 9 vdl~~~ats~~g~~~yGkimiGDkaFEFyn~~n-~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~ 76 (118)
T PF06115_consen 9 VDLTTKATSYLGLGKYGKIMIGDKAFEFYNDRN-VEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKK 76 (118)
T ss_pred EEEEEeeEEEecccccCeEEEcccceEeecCCC-hhhcEEeChhheeEEEEEEEECCCEEeeEEEEECC
Confidence 333444555566778999999999999997632 255688999999999887542 123457888864
No 23
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=84.25 E-value=22 Score=29.27 Aligned_cols=72 Identities=11% Similarity=0.034 Sum_probs=45.1
Q ss_pred CeEEEEEEeecCCCCCCCeEEEEEEEEEEecCCCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHHHHHHHHHhhh
Q 016456 288 KIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLETARSYI 366 (389)
Q Consensus 288 ~~~vv~~~~~~~dVPygd~F~v~~r~~it~~~~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~~~l~~~~k~v 366 (389)
..+.+.... .+-+........|.|++. ++.|+|.....+.+.. .++.+...-.-...++.....++.+++.+
T Consensus 72 ~~~~~~~~~----~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 72 ESYTITGEG----KGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred cEEEEEEEE----cCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456655432 122556789999999997 6779999998888654 34444444444445555566666655543
No 24
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=83.90 E-value=5.2 Score=28.60 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=39.0
Q ss_pred CeeeEEEEeeeee--ccccceEEEeecCeeeEEeccCCceeEEEEecccceeeee
Q 016456 40 ELVEHSYSCALER--SFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRR 92 (389)
Q Consensus 40 E~Ll~~f~C~l~~--~~~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k 92 (389)
|.++..+.-.+-- ..---|+|+||+=++..||..- ....+.||+..|.+|..
T Consensus 1 E~v~~~~~~Ved~kgn~G~~G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~~ 54 (55)
T smart00683 1 ERVLTRINGVEDTKGNNGDLGVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVRV 54 (55)
T ss_pred CEEEeeecCeEecCCCCCCeeEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEEe
Confidence 4556666665542 3445599999999999999875 36789999999988753
No 25
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=83.42 E-value=5.5 Score=30.64 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=36.1
Q ss_pred ceEEEeecCe--eeEEeccCCceeEEEEecccceeeeecccccccCcEEEEEec
Q 016456 57 HGRMYVSAWH--ICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRM 108 (389)
Q Consensus 57 ~Grlyit~~~--lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~~~~~i~I~~~~ 108 (389)
.|.|||++++ +-+--+--+-...+.|++.+|...+..+...=--.++|..+.
T Consensus 13 ~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~ 66 (79)
T PF08567_consen 13 DGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKVMLKIVLKD 66 (79)
T ss_dssp EEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTEEEEEEETT
T ss_pred CcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcceEEEEEEec
Confidence 4999999999 888765433334799999999999887665211157777653
No 26
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=82.91 E-value=10 Score=37.30 Aligned_cols=100 Identities=22% Similarity=0.301 Sum_probs=72.0
Q ss_pred cccCCCeeeEEEEeeee--eccccceEEEeecCeeeEEeccCCceeEEEEecccceeeeecccccccCcEEEEEecCCCC
Q 016456 35 NLLPDELVEHSYSCALE--RSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRMGAGG 112 (389)
Q Consensus 35 ~lp~~E~Ll~~f~C~l~--~~~~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~~~~~i~I~~~~g~~~ 112 (389)
.|-|+|.+.....-.|. .++---|.+++|+-++-.|+++- -.-.+.||+-.|.+|....+ .+.+++.|.|...
T Consensus 150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~n-e~fNVSiPylqi~~i~ir~S-KfG~aLVieT~~~--- 224 (339)
T PF07289_consen 150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMN-ESFNVSIPYLQIKSIRIRDS-KFGPALVIETSES--- 224 (339)
T ss_pred eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCC-ccccccchHhhheeeeeecc-ccceEEEEEEecc---
Confidence 47789999999998886 45555599999999999999753 35678999999999998766 4567888888542
Q ss_pred CCCCCCCCCCCceEEEEeeecch----HHHHHHHHHHHHHHh
Q 016456 113 HGVPPLGSPDGRVRYKFASFWNR----NHALRQLQRIAKNYH 150 (389)
Q Consensus 113 ~~~~~~~~~~g~~~~~f~sf~~r----d~~~~~l~~~~~~~~ 150 (389)
.| .|....=+++ +..++-|..||+.+.
T Consensus 225 ---------sG--gYVLGFRvDP~ErL~~l~KEi~sLh~vy~ 255 (339)
T PF07289_consen 225 ---------SG--GYVLGFRVDPEERLQELFKEIQSLHKVYS 255 (339)
T ss_pred ---------CC--cEEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 13 4555444663 344555555665554
No 27
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=81.41 E-value=35 Score=29.53 Aligned_cols=142 Identities=11% Similarity=0.145 Sum_probs=77.0
Q ss_pred ccceEeecCHHHHHhHhcCCCCchHHHHH-HHcCCcceEecccccCCCCCCeEEEEEEEEecCCCCCCCceeEeEEEEEE
Q 016456 204 IYNDVFPCTAEQFFTLLFSDDSTFTNEYR-AARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAV 282 (389)
Q Consensus 204 v~~~~~~~s~~~lf~llF~d~s~f~~~~~-~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~~~e~Q~~~ 282 (389)
..+.+.++|++.||.++-. ...++.... ..-+.-++.-+.|.. ++..|.++|... || .-...|++.
T Consensus 7 ~~E~~~~~~a~k~~ka~~~-~~~llpki~P~~i~sve~~eGdgg~----gGSIk~~~f~~~-----~~---~~~~Kekve 73 (151)
T PF00407_consen 7 EVEVEVKVSADKLWKAFKS-SPHLLPKILPHVIKSVEVVEGDGGP----GGSIKKWTFGPG-----GP---FKYVKEKVE 73 (151)
T ss_dssp EEEEEESS-HHHHHHHHTT-HHHHHHHHSTTTEEEEEEEESSSST----TT-EEEEEEETT-----SS---EEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHhc-CccchhhhChhhceeEEEEccCCCC----CCeEEEEEecCC-----CC---cceeEEEEE
Confidence 4456789999999998654 333333332 222334555578864 468899999852 22 234567777
Q ss_pred Ec-CCCCeEEEEEEeecCCCCCCCeEEEEEEEEEEecCCCceEEEEEEeEEEeeeccchhhhhhc-hHHHHHHHHHHHHH
Q 016456 283 LS-PDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTG-AVNEYKKEVELMLE 360 (389)
Q Consensus 283 ~~-~d~~~~vv~~~~~~~dVPygd~F~v~~r~~it~~~~~~c~l~V~~~V~f~K~t~~K~~Ie~~-~~~~~k~~~~~~l~ 360 (389)
.. .++..+.... . .+=+.+++..-.....+.+.+++.|.++... +|.+.. +.. ..+...+.+..+++
T Consensus 74 ~~D~~~~~~~y~v--i-EGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~--~Ye~~~------~~~~~p~~~~~~~~~~~K 142 (151)
T PF00407_consen 74 AIDEENKTITYTV--I-EGDVLGDYKSFKSTIQKIPKGDGGCVVKWTI--EYEKKG------EDVPPPEKYLDFAVGMFK 142 (151)
T ss_dssp EEETTTTEEEEEE--E-EETTGTTTEEEEEEEEEEEETTSCEEEEEEE--EEEESS------TSCHHHHHHHHHHHHHHH
T ss_pred eecCCCcEEEEEE--E-eccccccEEEEEEEEEecCCCCCceEEEEEE--EEEecC------CCCCCcHHHHHHHHHHHH
Confidence 53 3333333322 1 2222344444334444446666667666555 555421 111 34455556778888
Q ss_pred HHHhhhhcC
Q 016456 361 TARSYIKTR 369 (389)
Q Consensus 361 ~~~k~v~~~ 369 (389)
.+..++.+|
T Consensus 143 ~ieayLlan 151 (151)
T PF00407_consen 143 AIEAYLLAN 151 (151)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcC
Confidence 888887654
No 28
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=81.21 E-value=28 Score=28.30 Aligned_cols=108 Identities=10% Similarity=0.135 Sum_probs=53.7
Q ss_pred ccceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCCCCCceeEeEEEEEEE
Q 016456 204 IYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVL 283 (389)
Q Consensus 204 v~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~~~e~Q~~~~ 283 (389)
....++++|++.+|+++-. -..+ ..+.-. ...+. +.......+..|.+.+. .| ....+++..
T Consensus 4 ~~~~~i~a~~~~V~~~l~d-~~~~-~~w~~~--~~~~~---~~~~~~~~g~~~~~~~~------~g-----~~~~~~i~~ 65 (140)
T cd07821 4 TVSVTIDAPADKVWALLSD-FGGL-HKWHPA--VASCE---LEGGGPGVGAVRTVTLK------DG-----GTVRERLLA 65 (140)
T ss_pred EEEEEECCCHHHHHHHHhC-cCch-hhhccC--cceEE---eecCCCCCCeEEEEEeC------CC-----CEEEEEehh
Confidence 3456899999999998653 3322 233221 12221 21111112344444332 12 112233332
Q ss_pred -cCCCCeEEEEEEeecCCCCCCCeEEEEEEEEEEecCCCceEEEEEEeEEEe
Q 016456 284 -SPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFK 334 (389)
Q Consensus 284 -~~d~~~~vv~~~~~~~dVPygd~F~v~~r~~it~~~~~~c~l~V~~~V~f~ 334 (389)
.+....+.+.... .+.|+. .....|.++..++++|+|.......-.
T Consensus 66 ~~~~~~~i~~~~~~--~~~~~~---~~~~~~~~~~~~~~~t~v~~~~~~~~~ 112 (140)
T cd07821 66 LDDAERRYSYRIVE--GPLPVK---NYVATIRVTPEGDGGTRVTWTAEFDPP 112 (140)
T ss_pred cCccCCEEEEEecC--CCCCcc---cceEEEEEEECCCCccEEEEEEEEecC
Confidence 2221445544332 124433 456789999988878888777765443
No 29
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.66 E-value=7 Score=41.00 Aligned_cols=104 Identities=22% Similarity=0.354 Sum_probs=71.3
Q ss_pred ccccccccccccCCCeee-EEEEeeeeeccccceEEEeecCeeeEEeccCCceeEEEEecccceeeeecccccc-cC--c
Q 016456 26 KPGPLQTIFNLLPDELVE-HSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFI-NP--A 101 (389)
Q Consensus 26 ~~~~f~~lF~lp~~E~Ll-~~f~C~l~~~~~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~~-~~--~ 101 (389)
.+.+....|.+-++|.++ ..|-|-+.. ...|+|+||+-.|+|.+.-.+....+-+||.=|..|||.-++.- -| .
T Consensus 26 ~~~~~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~ 103 (717)
T KOG4471|consen 26 EDENLQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFG 103 (717)
T ss_pred ccccccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCccee
Confidence 344466677766666665 455666555 78899999999999999877766788899999999999876532 23 5
Q ss_pred EEEEEecCCCCCCCCCCCCCCCceEEEEeeecc-hHHHHHHHHH
Q 016456 102 ITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN-RNHALRQLQR 144 (389)
Q Consensus 102 i~I~~~~g~~~~~~~~~~~~~g~~~~~f~sf~~-rd~~~~~l~~ 144 (389)
|+|..+.. ....+-|..+-. |-..++.|..
T Consensus 104 L~i~CKDm-------------r~lR~~fk~~~q~r~~~~e~L~~ 134 (717)
T KOG4471|consen 104 LEITCKDM-------------RNLRCAFKQEEQCRRDWFERLNR 134 (717)
T ss_pred EEEEeccc-------------cceeeecCcccccHHHHHHHHHH
Confidence 77776531 245666666642 3344555544
No 30
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=78.45 E-value=6.3 Score=41.87 Aligned_cols=84 Identities=14% Similarity=0.298 Sum_probs=59.9
Q ss_pred EEEEeeeeeccccceEEEeecC----eeeEEeccC------------CceeEEEEecccceeeeecccccc---------
Q 016456 44 HSYSCALERSFLYHGRMYVSAW----HICFHSNVF------------SKQMKVIIPIGDIDEIRRSQHAFI--------- 98 (389)
Q Consensus 44 ~~f~C~l~~~~~~~Grlyit~~----~lcFys~~~------------g~~~~~~i~~~dI~~I~k~~~~~~--------- 98 (389)
..|.|-|..+- |.+||+.. -|||.+... +......||+.||.+++|.-+...
T Consensus 519 v~F~AR~~Gkk---G~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa 595 (642)
T PF11696_consen 519 VEFPARYKGKK---GHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWA 595 (642)
T ss_pred eeeeeecCCcc---ceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeee
Confidence 34888887654 99999944 689977511 124568999999999999966421
Q ss_pred ------cCcEEEE-EecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHHH
Q 016456 99 ------NPAITII-LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRI 145 (389)
Q Consensus 99 ------~~~i~I~-~~~g~~~~~~~~~~~~~g~~~~~f~sf~~rd~~~~~l~~~ 145 (389)
.+++.|. ++ .|+ .|.++....||+.|+.|-.+
T Consensus 596 ~g~kEv~DGL~I~g~~--------------~g~-~y~lTA~~~RDeLFNRLiAm 634 (642)
T PF11696_consen 596 LGEKEVVDGLVIVGDE--------------PGQ-EYHLTAMPRRDELFNRLIAM 634 (642)
T ss_pred cCCcccccceEEeccC--------------CCC-EEEEEecchHHHHHHHHHhc
Confidence 2345555 32 344 78999999999999887653
No 31
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=77.81 E-value=32 Score=31.47 Aligned_cols=119 Identities=11% Similarity=0.122 Sum_probs=64.1
Q ss_pred cceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCCCCCceeEeEEEEEEEc
Q 016456 205 YNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLS 284 (389)
Q Consensus 205 ~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~~~e~Q~~~~~ 284 (389)
...+++.++.++..++..+ ..-|. -.+..|+..+.-+....-+-|....--|+.+.. -|.........
T Consensus 56 ~~~~i~a~~~~vl~~lld~-~~~Wd----------~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD-~V~~Rs~~~~~ 123 (204)
T cd08908 56 TTIEVPAAPEEILKRLLKE-QHLWD----------VDLLDSKVIEILDSQTEIYQYVQNSMAPHPARD-YVVLRTWRTNL 123 (204)
T ss_pred EEEEeCCCHHHHHHHHHhh-HHHHH----------HHhhheEeeEecCCCceEEEEEccCCCCCCCcE-EEEEEEEEEeC
Confidence 3557899999999988664 21222 222223322211222233344432112221111 12221222223
Q ss_pred CCCCeEEEEEEeecCCCCCCCeEE---EEEEEEEEecCCCceEEEEEEeEEEeee
Q 016456 285 PDKKIFVFETVQQAHDVPFGSYFE---IHCRWHLETISENSSTIDIKVGAHFKKW 336 (389)
Q Consensus 285 ~d~~~~vv~~~~~~~dVPygd~F~---v~~r~~it~~~~~~c~l~V~~~V~f~K~ 336 (389)
.++.+.++..+.....+|-. ..+ +.++|.|++.++++|+|...++++..++
T Consensus 124 ~~g~~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 124 PKGACALLATSVDHDRAPVA-GVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGH 177 (204)
T ss_pred CCCeEEEEEeecCcccCCcC-ceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCC
Confidence 45555444444566678844 444 4788999999999999999999988664
No 32
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=75.17 E-value=74 Score=29.88 Aligned_cols=41 Identities=5% Similarity=-0.101 Sum_probs=29.0
Q ss_pred eEEEEEEeecCCCCC----CCeEEEEEEEEEEecCCCceEEEEEE
Q 016456 289 IFVFETVQQAHDVPF----GSYFEIHCRWHLETISENSSTIDIKV 329 (389)
Q Consensus 289 ~~vv~~~~~~~dVPy----gd~F~v~~r~~it~~~~~~c~l~V~~ 329 (389)
|++.-.....+++|= =--+.....|+|.+.+++.|+|....
T Consensus 161 yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~ 205 (240)
T cd08913 161 YVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYN 205 (240)
T ss_pred EEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEE
Confidence 445556667788873 33456788999999889999985433
No 33
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=75.10 E-value=44 Score=30.59 Aligned_cols=117 Identities=10% Similarity=0.114 Sum_probs=67.5
Q ss_pred ceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCCCCCcee-EeEEEEEE-E
Q 016456 206 NDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTA-MTEYQHAV-L 283 (389)
Q Consensus 206 ~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~-~~e~Q~~~-~ 283 (389)
..+++.++.++.+.+.. .|..+|-.+..|...+.-+..+-.+.|... . +.|-..+ +....... .
T Consensus 57 ~~ei~~~p~~VL~~vl~-----------~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~--~-~~P~~~RD~v~~R~w~~~ 122 (205)
T cd08909 57 SVEVEAPPSVVLNRVLR-----------ERHLWDEDFLQWKVVETLDKQTEVYQYVLN--C-MAPHPSRDFVVLRSWRTD 122 (205)
T ss_pred EEEeCCCHHHHHHHHHh-----------hHhhHHhhcceeEEEEEeCCCcEEEEEEee--c-CCCCCCCEEEEEEEEEEe
Confidence 44678888888777643 244344444444443222222334455542 1 2232222 22222212 2
Q ss_pred cCCCCeEEEEEEeecCCCCCCCeEE---EEEEEEEEecCCCceEEEEEEeEEEeee
Q 016456 284 SPDKKIFVFETVQQAHDVPFGSYFE---IHCRWHLETISENSSTIDIKVGAHFKKW 336 (389)
Q Consensus 284 ~~d~~~~vv~~~~~~~dVPygd~F~---v~~r~~it~~~~~~c~l~V~~~V~f~K~ 336 (389)
.++|.+.++..+...++.|--+..+ ..++|.|++.++++|+|.--+.+++.++
T Consensus 123 ~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 123 LPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred CCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 2456666666666666676654443 4688999999988999999999999775
No 34
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=74.23 E-value=67 Score=29.98 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=48.3
Q ss_pred CeEEEEEEeecCCCCCC-CeEEEEEE---------------EEEEecCCCceEEEEEEeEEEeeeccchhhhhhchHHHH
Q 016456 288 KIFVFETVQQAHDVPFG-SYFEIHCR---------------WHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEY 351 (389)
Q Consensus 288 ~~~vv~~~~~~~dVPyg-d~F~v~~r---------------~~it~~~~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~ 351 (389)
.++++..+...+++|=. ++.++... |.+++ .+.+|++...+.++--++ +=..+|...+..+.
T Consensus 136 ~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~-iP~wvvn~~~k~~~ 213 (235)
T cd08872 136 TWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGW-APASVLRAVYKREY 213 (235)
T ss_pred eEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCC-ccHHHHHHHHHhhc
Confidence 34666666666777655 66666642 34444 456888888888877654 22556666666665
Q ss_pred HHHHHHHHHHHHhhhhc
Q 016456 352 KKEVELMLETARSYIKT 368 (389)
Q Consensus 352 k~~~~~~l~~~~k~v~~ 368 (389)
-+.++.+=..+++..+.
T Consensus 214 P~~l~~~~~~~~~~~~~ 230 (235)
T cd08872 214 PKFLKRFTSYVQEKTKG 230 (235)
T ss_pred hHHHHHHHHHHHHhcCC
Confidence 55566555555554443
No 35
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=71.92 E-value=80 Score=28.81 Aligned_cols=148 Identities=7% Similarity=0.032 Sum_probs=74.8
Q ss_pred ccceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCCCCCcee-EeEEEEEE
Q 016456 204 IYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTA-MTEYQHAV 282 (389)
Q Consensus 204 v~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~-~~e~Q~~~ 282 (389)
-.+.++++|++.||..+|.|-.. +..++-++..=+....-+... .|.|....-.+.||=+.+ .....+..
T Consensus 52 k~~~~v~~~~~~l~~~ll~D~~~--------~~~W~~~~~~~~vi~~~~~~~-~i~Y~v~~p~~~~pv~~RDfV~~r~~~ 122 (209)
T cd08906 52 ILKAFMQCPAELVYQEVILQPEK--------MVLWNKTVSACQVLQRVDDNT-LVSYDVAAGAAGGVVSPRDFVNVRRIE 122 (209)
T ss_pred EEEEEEcCCHHHHHHHHHhChhh--------ccccCccchhhhheeeccCCc-EEEEEEccccccCCCCCCceEEEEEEE
Confidence 44668899999999777765321 111122111111111111122 234532111111232222 33333333
Q ss_pred EcCCCCeEEEEEEeecCCCCC-CCeEEEE---EEEEEEe--cCCCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHH
Q 016456 283 LSPDKKIFVFETVQQAHDVPF-GSYFEIH---CRWHLET--ISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVE 356 (389)
Q Consensus 283 ~~~d~~~~vv~~~~~~~dVPy-gd~F~v~---~r~~it~--~~~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~ 356 (389)
... +.++++..+...+.+|= -++-+++ +-|++.. .++++|++.....++..++ +=+.+|.+...+...+.++
T Consensus 123 ~~~-~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~~lvN~~~~~~~~~~~~ 200 (209)
T cd08906 123 RRR-DRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPRYLIHQSLAATMFEFAS 200 (209)
T ss_pred ecC-CcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence 433 34566666655555653 3444455 4566665 4577899988888887663 3366666666666555555
Q ss_pred HHHHHH
Q 016456 357 LMLETA 362 (389)
Q Consensus 357 ~~l~~~ 362 (389)
.+-+.+
T Consensus 201 ~LR~~~ 206 (209)
T cd08906 201 HLRQRI 206 (209)
T ss_pred HHHHHH
Confidence 554444
No 36
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=71.49 E-value=82 Score=28.77 Aligned_cols=117 Identities=9% Similarity=0.027 Sum_probs=59.8
Q ss_pred cceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCC--CCCceeEeEEEEEE
Q 016456 205 YNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPM--CPPDTAMTEYQHAV 282 (389)
Q Consensus 205 ~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~l--gpk~t~~~e~Q~~~ 282 (389)
.+.+++.|+.+++++|-. -.. ...+.... ..++.....+...+-+.++.+.--|+ .|.. ....+...
T Consensus 49 ge~~v~as~~~v~~ll~D-~~~-r~~Wd~~~-------~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RD--fV~l~~~~ 117 (205)
T cd08874 49 GAGVIKAPLATVWKAVKD-PRT-RFLYDTMI-------KTARIHKTFTEDICLVYLVHETPLCLLKQPRD--FCCLQVEA 117 (205)
T ss_pred EEEEEcCCHHHHHHHHhC-cch-hhhhHHhh-------hheeeeeecCCCeEEEEEEecCCCCCCCCCCe--EEEEEEEE
Confidence 466889999999998843 221 11121111 22222111122334444554321112 2222 22223333
Q ss_pred EcCCCCeEEEEEEeec-CCCC-----CCCeEEEEEEEEEEec---CCCceEEEEEEeEEEe
Q 016456 283 LSPDKKIFVFETVQQA-HDVP-----FGSYFEIHCRWHLETI---SENSSTIDIKVGAHFK 334 (389)
Q Consensus 283 ~~~d~~~~vv~~~~~~-~dVP-----ygd~F~v~~r~~it~~---~~~~c~l~V~~~V~f~ 334 (389)
. .++.++ |...... +.+| |=.-+.+...|.|.+. ++++|+|....+++=-
T Consensus 118 ~-~~~~~v-i~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 118 K-EGELSV-VACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred E-CCCcEE-EEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 3 333344 4333322 2555 2335677889999998 7788999888887654
No 37
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=70.02 E-value=78 Score=28.54 Aligned_cols=88 Identities=26% Similarity=0.198 Sum_probs=53.9
Q ss_pred ccccccc--CCCCCcccccccccccccccc-cCCCeeeEEEEeee-eec-cccceEEEeecCeeeEEe-----ccCCcee
Q 016456 9 ARRRASL--DKQGPTVVHQKPGPLQTIFNL-LPDELVEHSYSCAL-ERS-FLYHGRMYVSAWHICFHS-----NVFSKQM 78 (389)
Q Consensus 9 ~~~~~~~--~~~~~~~~~~~~~~f~~lF~l-p~~E~Ll~~f~C~l-~~~-~~~~Grlyit~~~lcFys-----~~~g~~~ 78 (389)
.+|+.++ ...+.-..-..+..+.++++- ..+|.++.+-.+.= .|. -+..=.|.||+++||.-. .......
T Consensus 14 ~r~~~S~~r~f~gDyL~~~~~~~~~~~~~~~~~~e~vlFs~~v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~ 93 (199)
T PF06017_consen 14 ERRRSSVNRPFQGDYLGLNNNPKLQKILEKNEGDEKVLFSDRVQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKL 93 (199)
T ss_pred cccccccCccccccccCccccccHHHHHHhccCCcceEEEEEEEEecCCCCccceEEEEeCCeEEEEEEeecCCceeeEE
Confidence 3455553 333332223445667777743 22665554433321 132 233455789999999986 5566678
Q ss_pred EEEEecccceeeeecccc
Q 016456 79 KVIIPIGDIDEIRRSQHA 96 (389)
Q Consensus 79 ~~~i~~~dI~~I~k~~~~ 96 (389)
+..||+.+|.+|..++..
T Consensus 94 kr~i~l~~I~~IsvS~~~ 111 (199)
T PF06017_consen 94 KRRIPLSDITGISVSPLS 111 (199)
T ss_pred EeccCcccccEEEEccCC
Confidence 899999999999887643
No 38
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=67.05 E-value=97 Score=27.90 Aligned_cols=150 Identities=6% Similarity=0.063 Sum_probs=69.8
Q ss_pred ccceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCCCCCcee-EeEEEEEE
Q 016456 204 IYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTA-MTEYQHAV 282 (389)
Q Consensus 204 v~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~-~~e~Q~~~ 282 (389)
-.+.++++++++++.+++........++ +-.+...+.-..-+..+.-+.+..|-. ++++=+.+ ....+...
T Consensus 49 k~~~~i~~~~~~v~~~l~d~~~~~r~~W-------d~~~~~~~~le~id~~~~i~~~~~p~~-~~~~vs~RDfV~~~~~~ 120 (206)
T cd08867 49 RAEGIVDALPEKVIDVIIPPCGGLRLKW-------DKSLKHYEVLEKISEDLCVGRTITPSA-AMGLISPRDFVDLVYVK 120 (206)
T ss_pred EEEEEEcCCHHHHHHHHHhcCccccccc-------cccccceEEEEEeCCCeEEEEEEcccc-ccCccCCcceEEEEEEE
Confidence 4456889999999998876221111111 111111111000011223233333321 11221222 22333333
Q ss_pred EcCCCCeEEEEEEeecCCCCCC-CeEE---EEEEEEEEecC--CCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHH
Q 016456 283 LSPDKKIFVFETVQQAHDVPFG-SYFE---IHCRWHLETIS--ENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVE 356 (389)
Q Consensus 283 ~~~d~~~~vv~~~~~~~dVPyg-d~F~---v~~r~~it~~~--~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~ 356 (389)
...++.+++...+...+..|-- ++-+ ....|++++.. +++|.+...+.++..++ +=+.++.+.+.+. +.
T Consensus 121 ~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP~~lvn~~~~~~----~~ 195 (206)
T cd08867 121 RYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IPQSLVESAMPSN----LV 195 (206)
T ss_pred EeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-CcHHHHHhhhhhh----HH
Confidence 3444433333333333555543 3333 45678888654 56899998888888664 3355555554444 33
Q ss_pred HHHHHHHhhh
Q 016456 357 LMLETARSYI 366 (389)
Q Consensus 357 ~~l~~~~k~v 366 (389)
.+++.+++.|
T Consensus 196 ~~~~~lr~~~ 205 (206)
T cd08867 196 NFYTDLVKGV 205 (206)
T ss_pred HHHHHHHHhc
Confidence 4444444443
No 39
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=66.17 E-value=1.2e+02 Score=28.49 Aligned_cols=117 Identities=9% Similarity=-0.032 Sum_probs=58.2
Q ss_pred cceEeecCHHHHHhHhcCCCCchHHHHHHHcC-CcceEecccccCCCCCCeEEEEEEEEecCCCCCCCceeEeEEEEEEE
Q 016456 205 YNDVFPCTAEQFFTLLFSDDSTFTNEYRAARK-DTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVL 283 (389)
Q Consensus 205 ~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~-~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~~~e~Q~~~~ 283 (389)
.+.++++|++.++++|.. .. .-.++-.... ...+..-. ....-+..+.|.--|+.|..- |........
T Consensus 81 ~e~~vd~s~~~v~dlL~D-~~-~R~~WD~~~~e~evI~~id--------~d~~iyy~~~p~PwPvk~RDf-V~~~s~~~~ 149 (235)
T cd08873 81 VELKVQTCASDAFDLLSD-PF-KRPEWDPHGRSCEEVKRVG--------EDDGIYHTTMPSLTSEKPNDF-VLLVSRRKP 149 (235)
T ss_pred EEEEecCCHHHHHHHHhC-cc-hhhhhhhcccEEEEEEEeC--------CCcEEEEEEcCCCCCCCCceE-EEEEEEEec
Confidence 455689999999998853 22 1112211111 11111111 111223333332223444442 222222222
Q ss_pred cCCCCeEEEEEEeec-CCCCCCCeE----EEEEEEEEEecCCCceEEEEEEeEE
Q 016456 284 SPDKKIFVFETVQQA-HDVPFGSYF----EIHCRWHLETISENSSTIDIKVGAH 332 (389)
Q Consensus 284 ~~d~~~~vv~~~~~~-~dVPygd~F----~v~~r~~it~~~~~~c~l~V~~~V~ 332 (389)
..++..|+|...... +.+|=..-| .+...|+|++.++++|+|....+++
T Consensus 150 ~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 150 ATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred cCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 233334655555444 445433333 4678899999999999998887764
No 40
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=64.16 E-value=42 Score=25.24 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=38.8
Q ss_pred eecCeeeEEeccCCceeEEEEecccceeeeecccccc-----cCcEEEEEecCCCCCCCCCCCCCCCceEEEEeeecchH
Q 016456 62 VSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFI-----NPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRN 136 (389)
Q Consensus 62 it~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~~-----~~~i~I~~~~g~~~~~~~~~~~~~g~~~~~f~sf~~rd 136 (389)
|++++|.-+.-.+ ... ||+.+|.+|++.++.+. ...|.|... +. +.+..|-.+++
T Consensus 5 i~~~~L~I~~G~~---~~~-I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~---------------~~-~~i~IsP~~~~ 64 (74)
T PF06713_consen 5 IEDDYLIIKCGFF---KKK-IPIEDIRSIRPTKNPLSSPALSLDRLEIYYG---------------KY-KSILISPKDKE 64 (74)
T ss_pred EeCCEEEEEECCc---ccE-EEhHHccEEEecCCccccccccccEEEEEEC---------------CC-CEEEEECCCHH
Confidence 3566666654422 222 99999999999976532 246777762 11 22666777766
Q ss_pred HHHHHHHH
Q 016456 137 HALRQLQR 144 (389)
Q Consensus 137 ~~~~~l~~ 144 (389)
+-.+.|+.
T Consensus 65 ~FI~~L~k 72 (74)
T PF06713_consen 65 EFIAELQK 72 (74)
T ss_pred HHHHHHHh
Confidence 66565554
No 41
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=57.87 E-value=12 Score=34.68 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=31.2
Q ss_pred cccceEEEeecCeeeEEeccCCceeEEEEecccceeeeec
Q 016456 54 FLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRS 93 (389)
Q Consensus 54 ~~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~ 93 (389)
-+..||+.+|+++|.|-.+ ..+..|||++|.+|...
T Consensus 24 ~W~~~rIiLs~~rlvl~~~----~~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 24 KWVKGRIILSNDRLVLAFN----DGKITIPLSSIEDIGVR 59 (221)
T ss_pred CcEEEEEEEecCEEEEEcC----CCeEEEecceeEecccc
Confidence 4688999999999999864 45779999999999885
No 42
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=57.38 E-value=62 Score=31.93 Aligned_cols=103 Identities=17% Similarity=0.284 Sum_probs=69.6
Q ss_pred ccCCCeeeEEEEeeee-e-ccccceEEEeecCeeeEEeccCCceeEEEEecccceeeeecccc-cc---cCcEEEEEecC
Q 016456 36 LLPDELVEHSYSCALE-R-SFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHA-FI---NPAITIILRMG 109 (389)
Q Consensus 36 lp~~E~Ll~~f~C~l~-~-~~~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~-~~---~~~i~I~~~~g 109 (389)
+-++|.+++.+.-.=- + .--..|+|+||+=.|..+|...- ...+.|=+.-|.+|+..... .+ .-++.|.++-+
T Consensus 19 lr~GE~~i~~~~~VEDtKGN~G~~G~l~vTNLR~iW~s~~~~-r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~ 97 (339)
T PF07289_consen 19 LRPGEFIIDRLDPVEDTKGNNGDRGRLVVTNLRLIWHSLKRP-RINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFN 97 (339)
T ss_pred cccceEEEEeeeceeeccCCCCCeeEEEEEeeeeEEeccCCC-ceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecC
Confidence 5578888887765433 2 22356999999999999997543 46677778888887755332 22 23888887632
Q ss_pred CCCCCCCCCCCCCCceEEEEeeecchH---HHHHHHHHHHHHHhh
Q 016456 110 AGGHGVPPLGSPDGRVRYKFASFWNRN---HALRQLQRIAKNYHK 151 (389)
Q Consensus 110 ~~~~~~~~~~~~~g~~~~~f~sf~~rd---~~~~~l~~~~~~~~~ 151 (389)
+.+..|+|+...... ..|..+..+|+.+..
T Consensus 98 ------------~~rfEFiFt~~~~~~~~~~lf~~v~~v~raY~t 130 (339)
T PF07289_consen 98 ------------NTRFEFIFTNLSPNSPRQRLFTSVQAVYRAYET 130 (339)
T ss_pred ------------CceEEEEeccCCCCCccchHHHHHHHHHHHHHH
Confidence 235677887664322 458899999988753
No 43
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=57.33 E-value=1.5e+02 Score=26.87 Aligned_cols=142 Identities=11% Similarity=0.072 Sum_probs=69.8
Q ss_pred ceEee-cCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecCCCCCCCceeEeEEEEEEEc
Q 016456 206 NDVFP-CTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLS 284 (389)
Q Consensus 206 ~~~~~-~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~~~e~Q~~~~~ 284 (389)
..+|+ ++++.|++++.. ..+-.++...... -+.. ..+ + .+.+-+....--|+.+..- |.........
T Consensus 54 ~~~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~-~~~~-----~~~-~--~~i~y~~~k~PwPvs~RD~-V~~r~~~~~~ 121 (207)
T cd08910 54 FGVLEDCSPSLLADVYMD--LEYRKQWDQYVKE-LYEK-----ECD-G--ETVIYWEVKYPFPLSNRDY-VYIRQRRDLD 121 (207)
T ss_pred EEEEcCCCHHHHHHHHhC--HHHHHHHHHHHHh-heee-----cCC-C--CEEEEEEEEcCCCCCCceE-EEEEEecccc
Confidence 45777 899999998764 3343333222111 0111 111 1 2333333332233444432 2111122222
Q ss_pred CCCC-e-EEEEEEeecCCCCCCCeE----EEEEEEEEEecCCCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHHHH
Q 016456 285 PDKK-I-FVFETVQQAHDVPFGSYF----EIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELM 358 (389)
Q Consensus 285 ~d~~-~-~vv~~~~~~~dVPygd~F----~v~~r~~it~~~~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~~~ 358 (389)
.++. . +++......+++|-.+-| .....|+|++.++++|++...+..+--++ +=+.++...+.++....++.+
T Consensus 122 ~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~-IP~wlvN~~~~~~~~~~l~~l 200 (207)
T cd08910 122 VEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM-IPSWLINWAAKNGVPNFLKDM 200 (207)
T ss_pred CCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc-chHHHHHHHHHHhhHHHHHHH
Confidence 2333 2 334444555677755433 36688999988888899999888876432 223344444444443444443
Q ss_pred HH
Q 016456 359 LE 360 (389)
Q Consensus 359 l~ 360 (389)
=+
T Consensus 201 ~k 202 (207)
T cd08910 201 QK 202 (207)
T ss_pred HH
Confidence 33
No 44
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=55.27 E-value=79 Score=23.18 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=37.7
Q ss_pred EEEeecCeeeEEeccCCceeEEEEecccceeeeeccccc--ccC--cEEEEEe
Q 016456 59 RMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAF--INP--AITIILR 107 (389)
Q Consensus 59 rlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~--~~~--~i~I~~~ 107 (389)
+..++++.|...+.+++ .....+|+..|.+|+-..+.+ ..+ .|.+.+.
T Consensus 5 ~y~i~~~~l~i~~G~~~-~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~ 56 (80)
T PF03703_consen 5 GYTITDDRLIIRSGLFS-KRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTA 56 (80)
T ss_pred EEEEECCEEEEEECeEE-EEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEEC
Confidence 47889999999997776 677889999999999988764 233 5777664
No 45
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=53.81 E-value=1.7e+02 Score=26.45 Aligned_cols=145 Identities=11% Similarity=0.080 Sum_probs=70.9
Q ss_pred eEe-ecCHHHHHhHhcCCCCchHHHHHHHcCCcce-EecccccCCCCCCeEEEEEEEEecCCCCCCCceeEeEEEEEEEc
Q 016456 207 DVF-PCTAEQFFTLLFSDDSTFTNEYRAARKDTNL-VMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLS 284 (389)
Q Consensus 207 ~~~-~~s~~~lf~llF~d~s~f~~~~~~~~~~~di-~~~~W~~~~~~~~~~R~ity~~~l~~~lgpk~t~~~e~Q~~~~~ 284 (389)
.++ ++|+++|++++.. .++-.++........+ ... . ...++-+-+....--|+.+.. .....++...
T Consensus 51 ~~~~d~s~~~~~~~~~D--~~~r~~Wd~~~~~~~~le~~-----~--~~~~~i~y~~~~~P~P~s~RD--~V~~r~~~~~ 119 (207)
T cd08911 51 GSFDDVTARDFLNVQLD--LEYRKKWDATAVELEVVDED-----P--ETGSEIIYWEMQWPKPFANRD--YVYVRRYIID 119 (207)
T ss_pred EEEcCCCHHHHHHHHhC--HHHHHHHHhhheeEEEEEcc-----C--CCCCEEEEEEEECCCCCCCcc--EEEEEEEEEc
Confidence 456 8999999998875 3444444332222111 110 0 001222223222212333332 3333344444
Q ss_pred CCCCeEEEEEE-eecCCCCCCC----eEEEEEEEEEEecC---CCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHH
Q 016456 285 PDKKIFVFETV-QQAHDVPFGS----YFEIHCRWHLETIS---ENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVE 356 (389)
Q Consensus 285 ~d~~~~vv~~~-~~~~dVPygd----~F~v~~r~~it~~~---~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~ 356 (389)
.++..++|... ...+.+|-.. -......|+|++.. ++.|++.+.+..+--++ +=.+++..-+..+..+.++
T Consensus 120 ~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~-IP~~lvN~~~~~~~~~~l~ 198 (207)
T cd08911 120 EENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVN-IPSYITSWVAMSGMPDFLE 198 (207)
T ss_pred CCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCc-cCHHHHHHHHHhhccHHHH
Confidence 44444444433 3334677554 33467899999873 56788877666544332 2244444445555444555
Q ss_pred HHHHHHH
Q 016456 357 LMLETAR 363 (389)
Q Consensus 357 ~~l~~~~ 363 (389)
.+-+.+.
T Consensus 199 ~l~~a~~ 205 (207)
T cd08911 199 RLRNAAL 205 (207)
T ss_pred HHHHHHh
Confidence 5544443
No 46
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=50.92 E-value=1.5e+02 Score=24.80 Aligned_cols=61 Identities=7% Similarity=-0.005 Sum_probs=39.9
Q ss_pred CCCCCeEEEEEEEEEEecCCCceEEEEEEeEEEeee--ccchhhhhhchHHHHHHHHHHHHHHHHhhh
Q 016456 301 VPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKW--CVMQSKIKTGAVNEYKKEVELMLETARSYI 366 (389)
Q Consensus 301 VPygd~F~v~~r~~it~~~~~~c~l~V~~~V~f~K~--t~~K~~Ie~~~~~~~k~~~~~~l~~~~k~v 366 (389)
.+.+....+...|.++. .++.|+|.+...+..... .+++.+|++.+ ++.++.+++-+++.+
T Consensus 82 ~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~----~~~~~~~~~~l~~~~ 144 (146)
T cd07823 82 ARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVA----GRLLAQFAANLEARL 144 (146)
T ss_pred CCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHH----HHHHHHHHHHHHHHh
Confidence 45555668888999988 556899999999887763 45555555543 333455555444443
No 47
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=50.18 E-value=2e+02 Score=26.09 Aligned_cols=147 Identities=7% Similarity=0.053 Sum_probs=71.9
Q ss_pred cceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEEecC--CCCCCCceeEeEEEEEE
Q 016456 205 YNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCN--SPMCPPDTAMTEYQHAV 282 (389)
Q Consensus 205 ~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~~l~--~~lgpk~t~~~e~Q~~~ 282 (389)
.+.+++++++++|.+++.....+-.++ +-.+..-+..+.-+..+..+.+..|-. ..+.|.. ....++..
T Consensus 50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W-------~~~~~~~~vle~id~~~~i~~~~~p~~~~~~vs~RD--fV~~~~~~ 120 (208)
T cd08903 50 GEGIVYATLEQVWDCLKPAAGGLRVKW-------DQNVKDFEVVEAISDDVSVCRTVTPSAAMKIISPRD--FVDVVLVK 120 (208)
T ss_pred EEEEecCCHHHHHHHHHhccchhhhhh-------hhccccEEEEEEecCCEEEEEEecchhcCCCcCCCc--eEEEEEEE
Confidence 667899999999999874222111112 111111111000111222223333311 1133333 33334444
Q ss_pred EcCCCCeEEEEEEee-cCCC-CCCCeEEEEEE---EEEEec--CCCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHH
Q 016456 283 LSPDKKIFVFETVQQ-AHDV-PFGSYFEIHCR---WHLETI--SENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEV 355 (389)
Q Consensus 283 ~~~d~~~~vv~~~~~-~~dV-Pygd~F~v~~r---~~it~~--~~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~ 355 (389)
...+ .+|++..... .+.. |-.++.+++.. |.+... ++++|.|..++.++..++ +=+.+|.+...+.....+
T Consensus 121 ~~~d-~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~-iP~~lvn~~~~~~~~~~~ 198 (208)
T cd08903 121 RYED-GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY-LPQTVVDSFFPASMAEFY 198 (208)
T ss_pred ecCC-ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC-cCHHHHHHHhhHHHHHHH
Confidence 4444 3455544222 2233 33566666443 455555 457899999999988654 336666665555555555
Q ss_pred HHHHHHH
Q 016456 356 ELMLETA 362 (389)
Q Consensus 356 ~~~l~~~ 362 (389)
..+-+.+
T Consensus 199 ~~Lr~~~ 205 (208)
T cd08903 199 NNLTKAV 205 (208)
T ss_pred HHHHHHH
Confidence 5554444
No 48
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.22 E-value=63 Score=26.55 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=52.1
Q ss_pred ccccceEEEeecCeeeEEeccCCceeEEEEecccceeeeeccccc-ccCcEEEEEecCCCCCCCCCCCCCCCceEEEEee
Q 016456 53 SFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAF-INPAITIILRMGAGGHGVPPLGSPDGRVRYKFAS 131 (389)
Q Consensus 53 ~~~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~-~~~~i~I~~~~g~~~~~~~~~~~~~g~~~~~f~s 131 (389)
.+.-.|++-|...-+-||-+. .-..-+.|||.+|..|-...... +.+-..|.|.. +| +|.|+|
T Consensus 20 g~~~~GkiliGDkgfEFYn~~-nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td~-------------~g--k~~FaS 83 (122)
T COG4687 20 GFAEYGKILIGDKGFEFYNDR-NVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTDT-------------QG--KVRFAS 83 (122)
T ss_pred ehhhcCeEEEcccceeecCCC-ChhheeEecHHHhheeheeehhhhhcceEEEEEcC-------------Cc--eEEEEe
Confidence 344689999999999998653 23566889999999887665543 56667777743 23 778877
Q ss_pred ecchHHHHHHHHHH
Q 016456 132 FWNRNHALRQLQRI 145 (389)
Q Consensus 132 f~~rd~~~~~l~~~ 145 (389)
=-+ ..+++.+..-
T Consensus 84 kds-g~iLk~ir~y 96 (122)
T COG4687 84 KDS-GKILKKIREY 96 (122)
T ss_pred CCc-hhHHHHHHHH
Confidence 654 3444444443
No 49
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=42.74 E-value=1.9e+02 Score=23.66 Aligned_cols=32 Identities=6% Similarity=0.216 Sum_probs=25.6
Q ss_pred CeEEEEEEEEEEecCCCceEEEEEEeEEEeee
Q 016456 305 SYFEIHCRWHLETISENSSTIDIKVGAHFKKW 336 (389)
Q Consensus 305 d~F~v~~r~~it~~~~~~c~l~V~~~V~f~K~ 336 (389)
+-...+.+|.+++.++++|+|+....+.+...
T Consensus 82 ~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 82 PVASMSGEWRFEPLGGGGTRVTLRHDFTLGID 113 (142)
T ss_pred ChhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence 34567889999998877899888888887754
No 50
>PRK10724 hypothetical protein; Provisional
Probab=42.55 E-value=1.1e+02 Score=26.58 Aligned_cols=27 Identities=15% Similarity=0.490 Sum_probs=23.0
Q ss_pred EEEEEEEEEecCCCceEEEEEEeEEEe
Q 016456 308 EIHCRWHLETISENSSTIDIKVGAHFK 334 (389)
Q Consensus 308 ~v~~r~~it~~~~~~c~l~V~~~V~f~ 334 (389)
..+..|.|.+.++++|+|.....++|.
T Consensus 98 ~l~g~W~f~p~~~~~t~V~~~l~fef~ 124 (158)
T PRK10724 98 KLIGGWKFTPLSQEACRIEFHLDFEFT 124 (158)
T ss_pred hccceEEEEECCCCCEEEEEEEEEEEc
Confidence 478999999998888998888888864
No 51
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=40.75 E-value=1.1e+02 Score=25.38 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=35.9
Q ss_pred EEEEEEEEEEecCCCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHHHHHHHHHhhh
Q 016456 307 FEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLETARSYI 366 (389)
Q Consensus 307 F~v~~r~~it~~~~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~~~l~~~~k~v 366 (389)
......|.++..+ ++|+|.+...+....... -.++........++.++..|+.++..+
T Consensus 91 ~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~lk~~~ 148 (150)
T cd07818 91 ATNDVEFTLEPVG-GGTKVTWGMSGELPFPLK-LMYLFLDMDKMIGKDFEKGLANLKAVL 148 (150)
T ss_pred ccceEEEEEEEcC-CceEEEEEEEecCCchHH-HHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999984 469999888776554322 134444444455555666666655543
No 52
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=39.93 E-value=1.3e+02 Score=24.66 Aligned_cols=28 Identities=18% Similarity=0.580 Sum_probs=23.5
Q ss_pred EEEEEEEEEecCCCceEEEEEEeEEEee
Q 016456 308 EIHCRWHLETISENSSTIDIKVGAHFKK 335 (389)
Q Consensus 308 ~v~~r~~it~~~~~~c~l~V~~~V~f~K 335 (389)
..+..|.|++.++++|+|.....+++..
T Consensus 82 ~~~g~w~~~p~~~~~T~v~~~~~~~~~~ 109 (138)
T cd07813 82 HLEGEWRFKPLGENACKVEFDLEFEFKS 109 (138)
T ss_pred hceeEEEEEECCCCCEEEEEEEEEEECC
Confidence 3688999999998899888888887764
No 53
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=36.81 E-value=2.8e+02 Score=23.98 Aligned_cols=77 Identities=14% Similarity=0.278 Sum_probs=54.7
Q ss_pred EeEEEEEEEcCCCCeEEEEEEeecCCCCCCCeEEEEEEEEEEecCC--CceEEEEEEeEEEee-eccchhhhhhchHHHH
Q 016456 275 MTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISE--NSSTIDIKVGAHFKK-WCVMQSKIKTGAVNEY 351 (389)
Q Consensus 275 ~~e~Q~~~~~~d~~~~vv~~~~~~~dVPygd~F~v~~r~~it~~~~--~~c~l~V~~~V~f~K-~t~~K~~Ie~~~~~~~ 351 (389)
|...+.-.+.+.++.+.+.+ ..+-|++.+.|+.+....+.+. +.|.+.-.+.|.... ...+.+.||+-.++..
T Consensus 61 ~~~~E~S~vD~~~k~l~~~t----~Nls~~~~~~v~E~~~Y~~~p~np~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~f 136 (157)
T PF04707_consen 61 CYIIEESIVDPKNKTLTTKT----RNLSFSSFLSVEETCVYKPHPDNPNWTLFKQEATISIKGSFSGFSSRIEKFSVSRF 136 (157)
T ss_pred EEEEEEEEEECCCCEEEEEE----EEcccCceeEEEEEEEEEECCCCCCcceEEEEEEEEEeCchhhHhHHHHHHHHHHH
Confidence 44444445555556666544 4567899999999999888765 678898889888654 3578899998776654
Q ss_pred HHHH
Q 016456 352 KKEV 355 (389)
Q Consensus 352 k~~~ 355 (389)
++..
T Consensus 137 ~~na 140 (157)
T PF04707_consen 137 KSNA 140 (157)
T ss_pred HHHH
Confidence 4444
No 54
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=36.75 E-value=50 Score=27.98 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=26.3
Q ss_pred eEEEeecCeeeEEec-cCCceeEEEEeccccee--eeeccc-ccccCcEEEEEe
Q 016456 58 GRMYVSAWHICFHSN-VFSKQMKVIIPIGDIDE--IRRSQH-AFINPAITIILR 107 (389)
Q Consensus 58 Grlyit~~~lcFys~-~~g~~~~~~i~~~dI~~--I~k~~~-~~~~~~i~I~~~ 107 (389)
|.||||+..|.++++ -. ..-+.||+..|.= |.+... ....++|-+.+.
T Consensus 1 g~L~Vt~~~l~w~~~~~~--~~G~~ipY~sI~lHAisr~~~~~~~~~~lY~qld 52 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNEDS--SKGFSIPYPSISLHAISRDPSGSFPEPCLYLQLD 52 (135)
T ss_dssp EEEEEETTEEEEEET--T--TEEEEESS---SEEE--SS-S-S--S--EEEEEE
T ss_pred CEEEEecCEEEEECCCcC--CcceeecCCeEEEEEeecCCCCCCCCceEEEEEe
Confidence 789999999999983 23 4678889988853 333322 222356666653
No 55
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=36.26 E-value=2.1e+02 Score=22.47 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=42.4
Q ss_pred cceEEEeecCeeeEEeccCCceeEEEEecccceeeeeccc-ccccC--cEEEEEecCCCCCCCCCCCCCCCceEEEEeee
Q 016456 56 YHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQH-AFINP--AITIILRMGAGGHGVPPLGSPDGRVRYKFASF 132 (389)
Q Consensus 56 ~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~-~~~~~--~i~I~~~~g~~~~~~~~~~~~~g~~~~~f~sf 132 (389)
-+|-||.+++.|-|-.. +--+.|+++||..|+-+.. ..-.- .+.|.++. .+...+.|++.
T Consensus 11 ~~g~L~pl~~~l~f~~~----kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~-------------~~~~~~~fs~I 73 (95)
T PF08512_consen 11 NEGFLYPLEKCLLFGLE----KPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKD-------------YEGPPHEFSSI 73 (95)
T ss_dssp EEEEEEEESSEEEEECS----SS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT--------------TS-EEEEEEE
T ss_pred cCEEEEEccceEEEecC----CCeEEEEhhHeeEEEEEecccCcceEEEEEEEEec-------------CCCCcEEEeeE
Confidence 45999999997766221 3457899999999998663 22111 45566631 12346788776
Q ss_pred cchHHHHHHHHHHH
Q 016456 133 WNRNHALRQLQRIA 146 (389)
Q Consensus 133 ~~rd~~~~~l~~~~ 146 (389)
. |++ +..|..-+
T Consensus 74 ~-~~e-~~~l~~~l 85 (95)
T PF08512_consen 74 D-REE-YDNLKDFL 85 (95)
T ss_dssp E-GGG-HHHHHHHH
T ss_pred C-HHH-HHHHHHHH
Confidence 4 443 45555443
No 56
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=35.94 E-value=1.4e+02 Score=23.77 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=32.8
Q ss_pred EEeecCeeeEEeccCCceeEEEEecccceeeeecccccc--cCcEEEEE
Q 016456 60 MYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFI--NPAITIIL 106 (389)
Q Consensus 60 lyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~~--~~~i~I~~ 106 (389)
.-+|.+.|+||-.-. ..-+-.|||.+|..|+....... .+.++|.+
T Consensus 26 F~Lt~~~L~Y~k~~~-~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt 73 (98)
T cd01244 26 FQLTTTHLSWAKDVQ-CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVC 73 (98)
T ss_pred EEECCCEEEEECCCC-CceeeeEEccceEEEEEcCCcccCCCceEEEEe
Confidence 345667788876543 46677899999999997765433 35788887
No 57
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=35.53 E-value=2e+02 Score=23.57 Aligned_cols=50 Identities=8% Similarity=0.135 Sum_probs=30.9
Q ss_pred EEEEEEEEEecCC-CceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHHHH
Q 016456 308 EIHCRWHLETISE-NSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELM 358 (389)
Q Consensus 308 ~v~~r~~it~~~~-~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~~~ 358 (389)
..+..|.++..++ ++|+|.....+.+.. .+.-.++..-........++.+
T Consensus 88 ~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~~p~~l~~~~~~~~~~~~l~~l 138 (144)
T cd08866 88 RFEGSWRLEPLADGGGTLLTYEVEVKPDF-FAPVFLVEFVLRQDLPTNLLAI 138 (144)
T ss_pred ceEEEEEEEECCCCCeEEEEEEEEEEeCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 5689999999887 789988888777653 3334444433333333333333
No 58
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=33.00 E-value=3.7e+02 Score=24.24 Aligned_cols=122 Identities=8% Similarity=-0.019 Sum_probs=62.8
Q ss_pred cccceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCCCCCCeEEEEEEEE-ecCCCCCCCceeEeEEEEE
Q 016456 203 GIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRS-LCNSPMCPPDTAMTEYQHA 281 (389)
Q Consensus 203 ~v~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~~~~~~~R~ity~~-~l~~~lgpk~t~~~e~Q~~ 281 (389)
.-.+.+++.++..+..+|.. .+....+.-....... +... +.. ..+.|.. .+--|++....-+ ..+.+
T Consensus 48 ~k~e~~i~~~~~~~~~vl~d--~~~~~~W~p~~~~~~~-l~~~------~~~-~~v~y~~~~~PwPv~~RD~v~-~~~~~ 116 (215)
T cd08877 48 LRMEGEIDGPLFNLLALLNE--VELYKTWVPFCIRSKK-VKQL------GRA-DKVCYLRVDLPWPLSNREAVF-RGFGV 116 (215)
T ss_pred EEEEEEecCChhHeEEEEeh--hhhHhhhcccceeeEE-Eeec------CCc-eEEEEEEEeCceEecceEEEE-EEEEE
Confidence 34567889999999887764 3333333222211111 1111 111 2333432 2112244443322 23444
Q ss_pred EEc-CCCCeEEEEEEeec--CC--------CCCCC-----eEEEEEEEEEEecCCCceEEEEEEeEEEeee
Q 016456 282 VLS-PDKKIFVFETVQQA--HD--------VPFGS-----YFEIHCRWHLETISENSSTIDIKVGAHFKKW 336 (389)
Q Consensus 282 ~~~-~d~~~~vv~~~~~~--~d--------VPygd-----~F~v~~r~~it~~~~~~c~l~V~~~V~f~K~ 336 (389)
... .++ .++|...... .+ +|=.+ --.....|.|++.++++|.+...+.++-..+
T Consensus 117 ~~~~~~~-~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~ 186 (215)
T cd08877 117 DRLEENG-QIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMS 186 (215)
T ss_pred eeeccCC-CEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcc
Confidence 332 344 3444343322 11 55444 2456778999999999999999998875544
No 59
>KOG3238 consensus Chloride ion current inducer protein [Inorganic ion transport and metabolism]
Probab=31.66 E-value=72 Score=28.94 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.5
Q ss_pred EeeeeeccccceEEEeecCeeeEEe
Q 016456 47 SCALERSFLYHGRMYVSAWHICFHS 71 (389)
Q Consensus 47 ~C~l~~~~~~~Grlyit~~~lcFys 71 (389)
...+.+++.-.|+|||+++.|-.-+
T Consensus 25 ~a~ln~kvlg~GTlYIa~s~LsWl~ 49 (216)
T KOG3238|consen 25 KAVLNRKVLGTGTLYIAESTLSWLS 49 (216)
T ss_pred heeecCcccccceEEEecceEEeee
Confidence 3556688999999999999999887
No 60
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=29.32 E-value=40 Score=31.50 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=38.7
Q ss_pred ccceEEEeecCeeeEEeccC-CceeEEEEecccceeeeecccccccCcEE
Q 016456 55 LYHGRMYVSAWHICFHSNVF-SKQMKVIIPIGDIDEIRRSQHAFINPAIT 103 (389)
Q Consensus 55 ~~~Grlyit~~~lcFys~~~-g~~~~~~i~~~dI~~I~k~~~~~~~~~i~ 103 (389)
-..|.||||+.+|-|-+.-- -+...+.+||.-+.+++-.+..+-.|-|+
T Consensus 46 ~kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~klnQPvF~aNyik 95 (261)
T KOG3294|consen 46 TKKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVKLNQPVFGANYIK 95 (261)
T ss_pred ceeeeEEeecceEEEecCCCCcchhhhcchhhhhhhceecCcccccceee
Confidence 36799999999999988763 34556899999999999988876555443
No 61
>PF15436 PGBA_N: Plasminogen-binding protein pgbA N-terminal
Probab=28.55 E-value=47 Score=30.71 Aligned_cols=55 Identities=11% Similarity=0.009 Sum_probs=46.6
Q ss_pred CCeEEEEEEEEEEecCCCceEEEEEEeEEEeeeccchhhhhhchHHHHHHHHHHHH
Q 016456 304 GSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELML 359 (389)
Q Consensus 304 gd~F~v~~r~~it~~~~~~c~l~V~~~V~f~K~t~~K~~Ie~~~~~~~k~~~~~~l 359 (389)
|.+|.+...+-+...+..++.+-.+.+|+-.+..||. +..++..+.+...|+.++
T Consensus 164 cqSF~iL~~~~~~~~~~~~~q~PFySRv~~i~~~~~~-~~~s~~~~~Y~~YY~~Ll 218 (218)
T PF15436_consen 164 CQSFAILEKKPFDTSSVEKTQLPFYSRVEGIDTGWFG-FFGSSKSKNYFPYYDALL 218 (218)
T ss_pred cCceeEEEEEecccCCcceeccCceEeecccccceee-ccCCccccchHHHHHhhC
Confidence 6789999888988766789999999999999999998 777777788888877653
No 62
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=28.35 E-value=18 Score=20.52 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=10.9
Q ss_pred cccccccccccccc
Q 016456 21 TVVHQKPGPLQTIF 34 (389)
Q Consensus 21 ~~~~~~~~~f~~lF 34 (389)
+...+.|.+||++|
T Consensus 6 ~~~p~SNddFrkmf 19 (21)
T PF05391_consen 6 TAKPKSNDDFRKMF 19 (21)
T ss_pred ccCccchHHHHHHH
Confidence 44567789999988
No 63
>PF04386 SspB: Stringent starvation protein B; InterPro: IPR007481 Escherichia coli stringent starvation protein B (SspB), is thought to enhance the specificity of degradation of tmRNA-tagged proteins by the ClpXP protease. The tmRNA tag, also known as ssrA, is an 11-aa peptide added to the C terminus of proteins stalled during translation, targets proteins for degradation by ClpXP and ClpAP. SspB is a cytoplasmic protein that specifically binds to residues 1-4 and 7 of the tag. Binding of SspB enhances degradation of tagged proteins by ClpX, and masks sequence elements important for ClpA interactions, inhibiting degradation by ClpA []. However, more recent work has cast doubt on the importance of SspB in wild-type cells []. SspB is encoded in an operon whose synthesis is stimulated by carbon, amino acid, and phosphate starvation. SspB may play a special role during nutrient stress, for example by ensuring rapid degradation of the products of stalled translation, without causing a global increase in degradation of all ClpXP substrates [].; PDB: 2NYS_A 2QAZ_D 2QAS_A 1OX9_A 1OX8_A 1YFN_C 1TWB_B 1OU9_C 1OU8_B 1ZSZ_B ....
Probab=27.29 E-value=92 Score=27.12 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=30.2
Q ss_pred ceEEEeecCeeeEEeccCCceeEEEEecccceeeee
Q 016456 57 HGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRR 92 (389)
Q Consensus 57 ~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k 92 (389)
-..|-|.+++|.|....-|....+.|||.-|..|--
T Consensus 66 ~~~L~v~~d~i~f~arF~G~~~~i~VP~~AV~aiya 101 (155)
T PF04386_consen 66 VRDLSVDNDAISFTARFGGVPESIYVPFSAVLAIYA 101 (155)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEEEEEGGGEEEEEE
T ss_pred cCCcEEECCEEEEEEEECCEEEEEEEhHHhhheeec
Confidence 357899999999999999999999999988877654
No 64
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=25.34 E-value=1.7e+02 Score=25.26 Aligned_cols=28 Identities=18% Similarity=0.489 Sum_probs=24.1
Q ss_pred EEEEEEEEEecCCCceEEEEEEeEEEee
Q 016456 308 EIHCRWHLETISENSSTIDIKVGAHFKK 335 (389)
Q Consensus 308 ~v~~r~~it~~~~~~c~l~V~~~V~f~K 335 (389)
+...+|.|++.+++.|+|....+-+|..
T Consensus 86 ~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 86 YLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhcCceEEEECCCCceEEEEEEEeeehh
Confidence 5788999999999999998888887754
No 65
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.23 E-value=2.5e+02 Score=22.57 Aligned_cols=27 Identities=0% Similarity=-0.033 Sum_probs=19.7
Q ss_pred EEEEEEEEEecCCCceEEEEEEeEEEe
Q 016456 308 EIHCRWHLETISENSSTIDIKVGAHFK 334 (389)
Q Consensus 308 ~v~~r~~it~~~~~~c~l~V~~~V~f~ 334 (389)
..+..|.+++.++++|+|.........
T Consensus 80 ~~~~~~~f~~~~~~~T~vt~~~~~~~~ 106 (139)
T cd07817 80 PNAGSVRFRPAPGRGTRVTLTIEYEPP 106 (139)
T ss_pred CcceEEEEEECCCCCeEEEEEEEEECC
Confidence 445777788877778888887776654
No 66
>PHA02122 hypothetical protein
Probab=25.19 E-value=64 Score=23.01 Aligned_cols=41 Identities=7% Similarity=0.241 Sum_probs=30.7
Q ss_pred cccccccccccCCCeeeEEEE----eeeee-ccccceEEEeecCee
Q 016456 27 PGPLQTIFNLLPDELVEHSYS----CALER-SFLYHGRMYVSAWHI 67 (389)
Q Consensus 27 ~~~f~~lF~lp~~E~Ll~~f~----C~l~~-~~~~~Grlyit~~~l 67 (389)
.+.|..||+-.-+..++++|. |.... .+..+|+|+|.+..|
T Consensus 18 e~afi~l~g~~~~~iiihs~~~~gd~v~vn~e~~~ng~l~i~qt~~ 63 (65)
T PHA02122 18 EEAFIGLLGDGCENIIIHSFKDDGDEVIVNFELVVNGKLIINQTRL 63 (65)
T ss_pred HHHHHHhhCCCCCcEEEEeeccCCCEEEEEEEEEECCEEEEeeEEE
Confidence 456777777666889999996 66554 777899999977654
No 67
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=24.19 E-value=3e+02 Score=20.38 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=35.5
Q ss_pred cceEEEeecCeeeEEeccC---CceeEEEEecccceeeeecccc------cccCcEEEEEe
Q 016456 56 YHGRMYVSAWHICFHSNVF---SKQMKVIIPIGDIDEIRRSQHA------FINPAITIILR 107 (389)
Q Consensus 56 ~~Grlyit~~~lcFys~~~---g~~~~~~i~~~dI~~I~k~~~~------~~~~~i~I~~~ 107 (389)
..--+.|+++.|++|.+.- .......|++.++ .|...... .-.+.+.|.+.
T Consensus 18 k~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 18 KKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEET
T ss_pred EEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeC
Confidence 3345677888999988766 5577789999999 56554443 12357888873
No 68
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=23.36 E-value=3.4e+02 Score=23.00 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=23.3
Q ss_pred eEEEEEEEEEEecCCCceEEEEEEeEEEe
Q 016456 306 YFEIHCRWHLETISENSSTIDIKVGAHFK 334 (389)
Q Consensus 306 ~F~v~~r~~it~~~~~~c~l~V~~~V~f~ 334 (389)
......+|.|+..+++ |+|.......+.
T Consensus 86 ~~~m~~~W~f~~~~~g-T~V~~~~~~~~~ 113 (146)
T cd08860 86 FAYMNIRWEYTEVPEG-TRMRWVQDFEMK 113 (146)
T ss_pred cceeeeeEEEEECCCC-EEEEEEEEEEEC
Confidence 5688899999998665 999888888776
Done!