BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016457
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 119/254 (46%), Gaps = 12/254 (4%)
Query: 2 EMEAEESQSQPKSQSCDNVNSIKR--FGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
E EA +Q P S + + + + + LK ++ + + P +W +A S +
Sbjct: 11 ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 68
Query: 60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
++K++ G++ GH ++ +++S S ++L S S D T++ WD S + +
Sbjct: 69 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 126
Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
+ S +FC +F ++ +++ ++ WD + K + L +H + V+ VHF +
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRD 184
Query: 180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
+ +VS+S DGL +DT L+++I+ F K++ T TL
Sbjct: 185 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 240
Query: 240 SIWDWKDGQNVASF 253
+WD+ G+ + ++
Sbjct: 241 KLWDYSKGKCLKTY 254
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 119/254 (46%), Gaps = 12/254 (4%)
Query: 2 EMEAEESQSQPKSQSCDNVNSIKR--FGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
E EA +Q P S + + + + + LK ++ + + P +W +A S +
Sbjct: 9 ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 66
Query: 60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
++K++ G++ GH ++ +++S S ++L S S D T++ WD S + +
Sbjct: 67 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 124
Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
+ S +FC +F ++ +++ ++ WD + K + L +H + V+ VHF +
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRD 182
Query: 180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
+ +VS+S DGL +DT L+++I+ F K++ T TL
Sbjct: 183 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238
Query: 240 SIWDWKDGQNVASF 253
+WD+ G+ + ++
Sbjct: 239 KLWDYSKGKCLKTY 252
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 36 PNGEW--LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 91
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 150
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 151 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 205
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTY 233
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 39 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 94
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 95 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 153
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 154 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 208
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 39 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 94
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 95 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 153
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 154 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 208
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 38 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 93
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 94 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 152
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 153 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 207
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 208 NGKYILAATLDNTLKLWDYSKGKCLKTY 235
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 33 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 88
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 147
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 148 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 202
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTY 230
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 32 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 87
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 88 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 146
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 147 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 201
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 202 NGKYILAATLDNTLKLWDYSKGKCLKTY 229
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 39 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 94
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 95 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 153
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 154 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 208
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 50 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 105
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 106 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 164
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 165 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 219
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 220 NGKYILAATLDNTLKLWDYSKGKCLKTY 247
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 29 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 84
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 85 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 143
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 144 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 198
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 199 NGKYILAATLDNTLKLWDYSKGKCLKTY 226
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 34 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 89
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 90 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 148
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 149 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 203
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 204 NGKYILAATLDNTLKLWDYSKGKCLKTY 231
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 33 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 88
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 147
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 148 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 202
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTY 230
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 36 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 91
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 150
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 151 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 205
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTY 233
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 36 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 91
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + K + L +
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 150
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 151 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 205
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTY 233
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 100/208 (48%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 36 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 91
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + + L +
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL-PA 150
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 151 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 205
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T TL +WD+ G+ + ++
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTY 233
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 99/208 (47%), Gaps = 10/208 (4%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P +W +A S + ++K++ G++ GH ++ +++S S ++L S S D T
Sbjct: 36 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 91
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
++ WD S + ++ S +FC +F ++ +++ ++ WD + + L +
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL-PA 150
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
H + V+ VHF + + +VS+S DGL +DT L+++I+ F
Sbjct: 151 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 205
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
K++ T L +WD+ G+ + ++
Sbjct: 206 NGKYILAATLDNDLKLWDYSKGKCLKTY 233
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 78 GHSSTVNQISFSGPSTPHVLH-----SCSSDGTIRAWDTRS---FHEVWSVTAGSQEIFC 129
GHS+ V +++ H+LH S + D + WDTRS V A + E+ C
Sbjct: 227 GHSAVVEDVAW------HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 130 FSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188
SF ++++LA G + + WD RN K ESH +++ QVH+ P+N+ + S+
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 189 DGLICTFD 196
D + +D
Sbjct: 341 DRRLNVWD 348
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 78 GHSSTVNQISFSGPSTPHVLH-----SCSSDGTIRAWDTRS---FHEVWSVTAGSQEIFC 129
GHS+ V +++ H+LH S + D + WDTRS V A + E+ C
Sbjct: 227 GHSAVVEDVAW------HLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 130 FSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188
SF ++++LA G + + WD RN K ESH +++ QVH+ P+N+ + S+
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 189 DGLICTFD 196
D + +D
Sbjct: 341 DRRLNVWD 348
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%)
Query: 50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLH-----SCSSDG 104
W + AV VV + TG H++ V +S+ H+LH S + D
Sbjct: 205 WDISAVPKEGKVVDAKTIFTG--------HTAVVEDVSW------HLLHESLFGSVADDQ 250
Query: 105 TIRAWDTRSFH---EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVA 160
+ WDTRS + SV A + E+ C SF ++++LA G + + WD RN K
Sbjct: 251 KLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 310
Query: 161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
ESH +++ QV + P+N+ + S+ D + +D
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 78 GHSSTVNQISFSGPSTPHVLH-----SCSSDGTIRAWDTR---SFHEVWSVTAGSQEIFC 129
GH++ V +++ H+LH S + D + WDTR + +V A + E+ C
Sbjct: 231 GHTAVVEDVAW------HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 284
Query: 130 FSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188
SF ++++LA G + + WD RN K ESH +++ QV + P+N+ + S+
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 189 DGLICTFD 196
D + +D
Sbjct: 345 DRRLHVWD 352
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 78 GHSSTVNQISFSGPSTPHVLH-----SCSSDGTIRAWDTR---SFHEVWSVTAGSQEIFC 129
GH++ V +++ H+LH S + D + WDTR + +V A + E+ C
Sbjct: 229 GHTAVVEDVAW------HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282
Query: 130 FSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188
SF ++++LA G + + WD RN K ESH +++ QV + P+N+ + S+
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 189 DGLICTFD 196
D + +D
Sbjct: 343 DRRLHVWD 350
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 78 GHSSTVNQISFSGPSTPHVLH-----SCSSDGTIRAWDTR---SFHEVWSVTAGSQEIFC 129
GH++ V +++ H+LH S + D + WDTR + +V A + E+ C
Sbjct: 233 GHTAVVEDVAW------HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 286
Query: 130 FSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188
SF ++++LA G + + WD RN K ESH +++ QV + P+N+ + S+
Sbjct: 287 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 189 DGLICTFD 196
D + +D
Sbjct: 347 DRRLHVWD 354
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD- 110
L+AV+ S ++++ +P+T Q GH + +N++ F P P++L S S D +R W+
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH-PRDPNLLLSVSKDHALRLWNI 181
Query: 111 -TRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
T + ++ G + E+ + + +++ G ++ W +K+ + ++ES+
Sbjct: 182 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-- 239
Query: 169 DVTQVHFVPNNQNK 182
+ PN N+
Sbjct: 240 -----DYNPNKTNR 248
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111
L+AV+ S ++++ +P+T Q GH + +N++ F P P++L S S D +R W+
Sbjct: 82 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH-PRDPNLLLSVSKDHALRLWNI 140
Query: 112 RSFHEVW---SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
++ V V E+ + + +++ G ++ W +K+ + ++ES+
Sbjct: 141 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-- 198
Query: 169 DVTQVHFVPNNQNK 182
+ PN N+
Sbjct: 199 -----DYNPNKTNR 207
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD- 110
L+AV+ S ++++ +P+T Q GH + +N++ F P P++L S S D +R W+
Sbjct: 87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH-PRDPNLLLSVSKDHALRLWNI 145
Query: 111 -TRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
T + ++ G + E+ + + +++ G ++ W +K+ + ++ES+
Sbjct: 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-- 203
Query: 169 DVTQVHFVPNNQNK 182
+ PN N+
Sbjct: 204 -----DYNPNKTNR 212
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD- 110
L+AV+ S ++++ +P+T Q GH + +N++ F P P++L S S D +R W+
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH-PRDPNLLLSVSKDHALRLWNI 144
Query: 111 -TRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
T + ++ G + E+ + + +++ G ++ W +K+ + ++ES+
Sbjct: 145 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-- 202
Query: 169 DVTQVHFVPNNQNK 182
+ PN N+
Sbjct: 203 -----DYNPNKTNR 211
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111
L+AV+ S ++++ +P+T Q GH + +N++ F P P++L S S D +R W+
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH-PRDPNLLLSVSKDHALRLWNI 144
Query: 112 RSFHEVW---SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
++ V V E+ + + +++ G ++ W +K+ + ++ES+
Sbjct: 145 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-- 202
Query: 169 DVTQVHFVPNNQNK 182
+ PN N+
Sbjct: 203 -----DYNPNKTNR 211
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109
+S+M + +K++ TG + KGH+ +V ISF + +L SCS+D TI+ W
Sbjct: 120 FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD--HSGKLLASCSADMTIKLW 177
Query: 110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWD 152
D + F + ++ + S + D++++A I+ W+
Sbjct: 178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 22/173 (12%)
Query: 39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF---------- 88
++V + P D +L+A + V+++ T + E + H V IS+
Sbjct: 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Query: 89 ---------SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYL 139
SG P +L S S D TI+ WD + + ++ + F ++
Sbjct: 295 EATGSETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 353
Query: 140 LAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
L+ ++ WD++NK+ + L +H VT + F VV+ SVD +
Sbjct: 354 LSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDF-HKTAPYVVTGSVDQTV 404
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
+K++ TG GH + V + F S + SC+ D T+R WD ++ + +
Sbjct: 318 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMKT 375
Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR 154
+ A + F + Y++ ++ W+ R
Sbjct: 376 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 11/229 (4%)
Query: 77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
+ H+ V FS + SC +D T++ + + ++ + A E+ C +F
Sbjct: 619 RPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
Y+ +++ WD K V +E H E V HF N N ++ A+ G F
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFT-NKSNHLLLAT--GSNDFFL 732
Query: 197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENA 256
D+N + ++ SV F ++ L + TL +WD + S
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCR-FSPDDELLASCSADGTLRLWDVRSANERKSINVK 791
Query: 257 RSLASDSWTLDDVDYFVD-CHYPGEGENLWVIGGTGAGTVGYFPVNYGG 304
R S +DV+ V C + +G+ + V V F ++ G
Sbjct: 792 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIV---AAKNKVLLFDIHTSG 837
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 47 KNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTI 106
K++ L+A + +KL+ + GH+++VN FS +L SCS+DGT+
Sbjct: 717 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD--ELLASCSADGTL 774
Query: 107 RAWDTRSFHEVWSVTAG----SQE---------IFCFSFGGSTDYLLAAGCGSQIQFWDW 153
R WD RS +E S+ S E + C S+ D ++ A +++ +D
Sbjct: 775 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDI 833
Query: 154 RNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS 187
+A + H + F P + V++ S
Sbjct: 834 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 867
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111
L ++LS V+L++ + +C+GH S V+ + FS + + + S D TIR W+T
Sbjct: 861 LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL--TASDDQTIRVWET 918
Query: 112 RS--------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE 163
+ + V E + L AG QI D+ + QV+C
Sbjct: 919 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI---DYLPEAQVSCCC 975
Query: 164 ES-HVEDVT--------QVHFVPNNQ 180
S H+E V ++ +PNN+
Sbjct: 976 LSPHLEYVAFGDEDGAIKIIELPNNR 1001
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 11/229 (4%)
Query: 77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
+ H+ V FS + SC +D T++ + + ++ + A E+ C +F
Sbjct: 612 RPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
Y+ +++ WD K V +E H E V HF N N ++ A+ G F
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFT-NKSNHLLLAT--GSNDFFL 725
Query: 197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENA 256
D+N + ++ SV F ++ L + TL +WD + S
Sbjct: 726 KLWDLNQKECRNTMFGHTNSVNHCR-FSPDDELLASCSADGTLRLWDVRSANERKSINVK 784
Query: 257 RSLASDSWTLDDVDYFVD-CHYPGEGENLWVIGGTGAGTVGYFPVNYGG 304
R S +DV+ V C + +G+ + V V F ++ G
Sbjct: 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIV---AAKNKVLLFDIHTSG 830
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 47 KNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTI 106
K++ L+A + +KL+ + GH+++VN FS +L SCS+DGT+
Sbjct: 710 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD--ELLASCSADGTL 767
Query: 107 RAWDTRSFHEVWSVTAG----SQE---------IFCFSFGGSTDYLLAAGCGSQIQFWDW 153
R WD RS +E S+ S E + C S+ D ++ A +++ +D
Sbjct: 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDI 826
Query: 154 RNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS 187
+A + H + F P + V++ S
Sbjct: 827 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 860
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111
L ++LS V+L++ + +C+GH S V+ + FS + + + S D TIR W+T
Sbjct: 854 LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL--TASDDQTIRVWET 911
Query: 112 RS--------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE 163
+ + V E + L AG QI D+ + QV+C
Sbjct: 912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI---DYLPEAQVSCCC 968
Query: 164 ES-HVEDVT--------QVHFVPNNQ 180
S H+E V ++ +PNN+
Sbjct: 969 LSPHLEYVAFGDEDGAIKIIELPNNR 994
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF----HEVWSVTAGSQEIFCFSFGGS 135
SST++ ++F TP +L + +S G ++ WD R ++ S+T + C +
Sbjct: 191 SSTLHAVTFL--RTPEIL-TVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPN 247
Query: 136 TDYLLAAG-CGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT 194
+++A G + WD R L ++H ++ +VHF P+N + + S DG +
Sbjct: 248 QQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWH 307
Query: 195 FDTGGDINDDDLL 207
+D D+ + L
Sbjct: 308 WDASTDVPEKSSL 320
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120
VKL++ GQ GHSS+VN ++F + S S D T++ W+ R+ + ++
Sbjct: 244 TVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDG--QTIASASDDKTVKLWN-RNGQLLQTL 299
Query: 121 TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ 180
T S ++ +F + +A ++ W+ RN + + L H V V F P+ Q
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTL-TGHSSSVWGVAFSPDGQ 357
Query: 181 NKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGF 222
+ SAS D + ++ G LL+++ +SV V F
Sbjct: 358 T-IASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAF 393
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120
VKL++ GQ GHSS+V ++FS + S S D T++ W+ R+ + ++
Sbjct: 80 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWN-RNGQLLQTL 135
Query: 121 TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ 180
T S ++ +F + +A ++ W+ RN + + L H V V F P+ Q
Sbjct: 136 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDGQ 193
Query: 181 NKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGF 222
+ SAS D + ++ G LL+++ +SV V F
Sbjct: 194 T-IASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAF 229
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120
VKL++ GQ GHSS+V ++FS + S S D T++ W+ R+ + ++
Sbjct: 449 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWN-RNGQLLQTL 504
Query: 121 TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ 180
T S + +F + +A ++ W+ RN + + L H V V F P+ Q
Sbjct: 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDGQ 562
Query: 181 NKVVSASVDGLI 192
+ SAS D +
Sbjct: 563 T-IASASSDKTV 573
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
+GHS V+ + S S S S DGT+R WD + ++++ +F
Sbjct: 83 RGHSHFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 140
Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV 184
+++ I+ W+ + +ESH E V+ V F PN+ N ++
Sbjct: 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 62 VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
++L+ TG + GH+ V ++FS + V S S D TI+ W+T + ++V
Sbjct: 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV--SGSRDKTIKLWNTLGVCK-YTVQ 166
Query: 122 --AGSQEIFCFSFGGSTDYLLAAGCG--SQIQFWDWRNKKQVACLEESHVEDVTQVHFVP 177
+ S+ + C F ++ + CG ++ W+ N K L+ +H+ ++
Sbjct: 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHIGHTGYLN--- 219
Query: 178 NNQNKVVSASVDGLICTFDTGG--------DINDDDLLESVINVGTSVGKVGFFGETNKH 229
V+ S DG +C +GG D+N+ L + ++ G + + F N++
Sbjct: 220 -----TVTVSPDGSLCA--SGGKDGQAMLWDLNEGKHLYT-LDGGDIINALCF--SPNRY 269
Query: 230 LWCLTHIETLSIWD 243
C ++ IWD
Sbjct: 270 WLCAATGPSIKIWD 283
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 5/152 (3%)
Query: 62 VKLYSPV-TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120
+KL++ + +Y+ + + HS V+ + FS S+ ++ SC D ++ W+ + +
Sbjct: 152 IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211
Query: 121 TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ 180
+ + + + G Q WD K + L+ + + + F PN
Sbjct: 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI--INALCFSPNRY 269
Query: 181 NKVVSASVDGLICTFDTGGDINDDDLLESVIN 212
+ A+ I +D G I D+L + VI+
Sbjct: 270 --WLCAATGPSIKIWDLEGKIIVDELKQEVIS 299
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
+GHS V+ + S S S S DGT+R WD + ++++ +F
Sbjct: 60 RGHSHFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 117
Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV 184
+++ I+ W+ + +ESH E V+ V F PN+ N ++
Sbjct: 118 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 165
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 62 VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
++L+ TG + GH+ V ++FS + V S S D TI+ W+T + ++V
Sbjct: 87 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV--SGSRDKTIKLWNTLGVCK-YTVQ 143
Query: 122 --AGSQEIFCFSFGGSTDYLLAAGCG--SQIQFWDWRNKKQVACLEESHVEDVTQVHFVP 177
+ S+ + C F ++ + CG ++ W+ N K L+ +H+ ++
Sbjct: 144 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHIGHTGYLN--- 196
Query: 178 NNQNKVVSASVDGLICTFDTGG--------DINDDDLLESVINVGTSVGKVGFFGETNKH 229
V+ S DG +C +GG D+N+ L + ++ G + + F N++
Sbjct: 197 -----TVTVSPDGSLCA--SGGKDGQAMLWDLNEGKHLYT-LDGGDIINALCF--SPNRY 246
Query: 230 LWCLTHIETLSIWD 243
C ++ IWD
Sbjct: 247 WLCAATGPSIKIWD 260
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 5/152 (3%)
Query: 62 VKLYSPV-TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120
+KL++ + +Y+ + + HS V+ + FS S+ ++ SC D ++ W+ + +
Sbjct: 129 IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 188
Query: 121 TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ 180
+ + + + G Q WD K + L+ + + + F PN
Sbjct: 189 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI--INALCFSPNRY 246
Query: 181 NKVVSASVDGLICTFDTGGDINDDDLLESVIN 212
+ A+ I +D G I D+L + VI+
Sbjct: 247 --WLCAATGPSIKIWDLEGKIIVDELKQEVIS 276
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 11/176 (6%)
Query: 79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST-- 136
H++ ++ SF+ S +L + S DGT WD S + S ++ C S
Sbjct: 153 HTNYLSACSFTN-SDMQIL-TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG 210
Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
+ ++ GC + WD R+ + V E+H DV V + P+ + S S D +D
Sbjct: 211 NTFVSGGCDKKAMVWDMRSGQCVQAF-ETHESDVNSVRYYPSG-DAFASGSDDATCRLYD 268
Query: 197 TGGDINDDDL-LESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA 251
D ES+I +SV F + + L+ + T+++WD G V+
Sbjct: 269 LRADREVAIYSKESIIFGASSVD----FSLSGRLLFAGYNDYTINVWDVLKGSRVS 320
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 17/176 (9%)
Query: 61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120
+VK++ P T +GH++ V + F G HV+ S S D +IR WD + + + ++
Sbjct: 260 MVKVWDPETETCLHTLQGHTNRVYSLQFDG---IHVV-SGSLDTSIRVWDVETGNCIHTL 315
Query: 121 TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVHFVPN 178
T + + L++ S ++ WD + + + L+ H VT + F
Sbjct: 316 TG--HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--- 370
Query: 179 NQNKVVSASVDGLICTFD--TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWC 232
N+N V+++S DG + +D TG I + LES G S G V +N L C
Sbjct: 371 NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES----GGSGGVVWRIRASNTKLVC 422
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
N +K++S VTG+ GH+ V +S +++ S S+D T++ W+ + + +
Sbjct: 139 NTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHT 194
Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
+ + + C +++ + ++ WD + + L + V V V +
Sbjct: 195 LYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL----MGHVAAVRCVQYD 248
Query: 180 QNKVVSASVDGLICTFD 196
+VVS + D ++ +D
Sbjct: 249 GRRVVSGAYDFMVKVWD 265
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 20/193 (10%)
Query: 58 STNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117
S V + SP GH + VN + F + S S D TI+ W+T + V
Sbjct: 234 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----KYIVSASGDRTIKVWNTSTCEFV 289
Query: 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLE--ESHVEDVTQVH 174
++ + I C + D L+ +G + I+ WD ACL E H E V +
Sbjct: 290 RTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIR 343
Query: 175 FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSV---GKVGFFGETNKHLW 231
F + ++VS + DG I +D + D + + T V G+V +
Sbjct: 344 F---DNKRIVSGAYDGKIKVWDLVAAL-DPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIV 399
Query: 232 CLTHIETLSIWDW 244
+H +T+ IWD+
Sbjct: 400 SSSHDDTILIWDF 412
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 7/141 (4%)
Query: 57 LSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116
L N +K++ T + GH+ +V + + V+ + SSD T+R WD +
Sbjct: 150 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD----ERVIITGSSDSTVRVWDVNTGEM 205
Query: 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFV 176
+ ++ + + F ++ I WD + + L V V+ V
Sbjct: 206 LNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWDMASPTDIT-LRRVLVGHRAAVNVV 262
Query: 177 PNNQNKVVSASVDGLICTFDT 197
+ +VSAS D I ++T
Sbjct: 263 DFDDKYIVSASGDRTIKVWNT 283
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
N+VK++ TG+ + KGH++ V ++ S + + S DG R WD +
Sbjct: 176 NLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS--LCASSDKDGVARLWDLTKGEALSE 233
Query: 120 VTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH 166
+ AG+ CFS Y + A I+ +D NK + L H
Sbjct: 234 MAAGAPINQICFS---PNRYWMCAATEKGIRIFDLENKDIIVELAPEH 278
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 24/195 (12%)
Query: 65 YSPVTGQYSGEC---------KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH 115
+ P ++S EC +GHS+ V+ ++ S V S S D ++R W+ ++
Sbjct: 43 WGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAV--SASWDHSLRLWNLQNGQ 100
Query: 116 EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHF 175
+ ++++ +F +++ G + ++ W+ + + +H + V+ V F
Sbjct: 101 CQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRF 160
Query: 176 VPN-NQNKVVSASVDGLICTFD--TGGDINDDDLLESVINVGTSV-----GKVGFFGETN 227
P+ + +VS D L+ +D TG + D L+ N TSV G + + +
Sbjct: 161 SPSLDAPVIVSGGWDNLVKVWDLATGRLVTD---LKGHTNYVTSVTVSPDGSLCASSDKD 217
Query: 228 --KHLWCLTHIETLS 240
LW LT E LS
Sbjct: 218 GVARLWDLTKGEALS 232
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 62 VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS--FHEVWS 119
++L++ GQ + GH+ V ++FS P ++ S D +R W+ + H + S
Sbjct: 91 LRLWNLQNGQCQYKFLGHTKDVLSVAFS-PDNRQIV-SGGRDNALRVWNVKGECMHTL-S 147
Query: 120 VTAGSQEIFCFSFGGSTD--YLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVP 177
A + + C F S D +++ G + ++ WD + V L + H VT V P
Sbjct: 148 RGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL-KGHTNYVTSVTVSP 206
Query: 178 NNQNKVVSASVDGLICTFD-TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI 236
+ + S+ DG+ +D T G+ S + G + ++ F N++ C
Sbjct: 207 DG-SLCASSDKDGVARLWDLTKGEA------LSEMAAGAPINQICF--SPNRYWMCAATE 257
Query: 237 ETLSIWD 243
+ + I+D
Sbjct: 258 KGIRIFD 264
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 97 LHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK 156
L + + D IR WD + V + Q+I+ + S D L++ ++ WD R
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197
Query: 157 KQVACLEESHVED-VTQVHFVPNNQNKVVSASVDGLICTFDT 197
+ C +ED VT V P + + + S+D + +D+
Sbjct: 198 Q---CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 9/158 (5%)
Query: 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL 97
D Y+ + D +A +++++ + +GH + + + PS ++
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLV 181
Query: 98 HSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK 157
S S D T+R WD R+ +++ G Y+ A ++ WD
Sbjct: 182 -SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 158 QVACLEES------HVEDVTQVHFVPNNQNKVVSASVD 189
V L+ H + V V F + Q+ VVS S+D
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLD 277
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 16/149 (10%)
Query: 52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111
L+A S +KL+ + GH+++VN FS +L SCS+DGT++ WD
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDK--LLASCSADGTLKLWDA 778
Query: 112 RSFHEVWSVTAGS--------QE-----IFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ 158
S +E S+ QE + C S+ ++ A ++I +D
Sbjct: 779 TSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAA-KNKIFLFDIHTSGL 837
Query: 159 VACLEESHVEDVTQVHFVPNNQNKVVSAS 187
+ + H + F P N VV+ S
Sbjct: 838 LGEIHTGHHSTIQYCDFSPQNHLAVVALS 866
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
P+N L V+LS V+L++ + +C+GH S V+ + FS P L S S D T
Sbjct: 856 PQN--HLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFS-PDGSSFLTS-SDDQT 911
Query: 106 IRAWDTRS--------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK 157
IR W+T+ + V E+ + L G QI D+ +
Sbjct: 912 IRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQI---DYLTEA 968
Query: 158 QVAC 161
QV+C
Sbjct: 969 QVSC 972
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/199 (18%), Positives = 76/199 (38%), Gaps = 7/199 (3%)
Query: 77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
+ H+ V FS + SC +D T++ + + ++ + A E+ C +F
Sbjct: 618 RPHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
++ +++ W+ + V +E H E V HF ++ + +++ G F
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHTYDE-HSEQVNCCHFTNSSHHLLLAT---GSSDCFL 731
Query: 197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENA 256
D+N + ++ SV F +K L + TL +WD S
Sbjct: 732 KLWDLNQKECRNTMFGHTNSVNHCR-FSPDDKLLASCSADGTLKLWDATSANERKSINVK 790
Query: 257 RSLASDSWTLDDVDYFVDC 275
+ + +D++ V C
Sbjct: 791 QFFLNLEDPQEDMEVIVKC 809
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 62 VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110
VK+++ +TG+ HS VN F+ S +L + SSD ++ WD
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 63 KLYSPVTGQYSG----ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW 118
KLY Y G GH+ V+ ++ S + + S S D T+R WD R+
Sbjct: 55 KLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI--SSSWDKTLRLWDLRTGTTYK 112
Query: 119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESHVEDVTQVHFVP 177
E++ +F +L+AG +I+ W+ + + + E E+H + V+ V + P
Sbjct: 113 RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172
Query: 178 --NNQNKV 183
+ NKV
Sbjct: 173 IMKSANKV 180
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHS 99
YV + +D S ++V L +V +Y + GH + V +S++ HVL S
Sbjct: 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR----HVLSS 191
Query: 100 CSSDGTIRAWDTR-SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN 155
S G I D R + H++ ++ S E+ ++ L + G + +Q WD R+
Sbjct: 192 GSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 76 CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGS 135
+GH V + S T + S S D IR WD + ++ S+ AG + + +F
Sbjct: 76 LEGHQLGVVSVDIS--HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD 133
Query: 136 TDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTF 195
+ YL ++ + + K+ L ++ + + + + P+ + + S ++DG+I F
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGK-YLASGAIDGIINIF 191
Query: 196 D 196
D
Sbjct: 192 D 192
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/157 (19%), Positives = 68/157 (43%), Gaps = 4/157 (2%)
Query: 40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHS 99
++ I D +A ++ ++ TG+ +GH+ + ++FS S +L +
Sbjct: 166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS--QLLVT 223
Query: 100 CSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV 159
S DG I+ +D + + +++ + + +F + +++ ++ WD + V
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283
Query: 160 ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
+ H + V V + N +K+VS D I +D
Sbjct: 284 HTFFD-HQDQVWGVKY-NGNGSKIVSVGDDQEIHIYD 318
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Query: 72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFS 131
+ G +GH ++V +S G +++ S S D T+ WD ++ ++ + I+
Sbjct: 262 FVGVLRGHMASVRTVSGHG----NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317
Query: 132 FGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL 191
+ ++A + I+ WD N + + L + H V + + +VSA+ DG
Sbjct: 318 YDHERKRCISASMDTTIRIWDLENGELMYTL-QGHTALVGLLRL---SDKFLVSAAADGS 373
Query: 192 ICTFDTGGDIND 203
I G D ND
Sbjct: 374 I----RGWDAND 381
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 62 VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
++++ G+ +GH++ V + S L S ++DG+IR WD + +S
Sbjct: 334 IRIWDLENGELMYTLQGHTALVGLLRLSDK----FLVSAAADGSIRGWDANDYSRKFSYH 389
Query: 122 AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN 181
+ + +D +L +G +Q ++ R+ K V + ++D Q+ V N +
Sbjct: 390 HTNLSAITTFY--VSDNILVSGSENQFNIYNLRSGKLV---HANILKDADQIWSV-NFKG 443
Query: 182 KVVSASVD 189
K + A+V+
Sbjct: 444 KTLVAAVE 451
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 78 GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD 137
GHS V + S S S S DG +R WD + ++++ +F
Sbjct: 428 GHSHFVEDVVLS--SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 138 YLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVHFVPNN-QNKVVSASVDGLI 192
+++A I+ W+ + + E E H + V+ V F PN Q +VSAS D +
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFS 131
+ G +GH ++V +S G +++ S S D T+ WD ++ ++ + I+
Sbjct: 262 FVGVLRGHXASVRTVSGHG----NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTI 317
Query: 132 FGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL 191
+ ++A + I+ WD N + L + H V + + +VSA+ DG
Sbjct: 318 YDHERKRCISASXDTTIRIWDLENGELXYTL-QGHTALVGLLRL---SDKFLVSAAADGS 373
Query: 192 ICTFDTGGDIND 203
I G D ND
Sbjct: 374 I----RGWDAND 381
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 62 VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
++++ G+ +GH++ V + S L S ++DG+IR WD + +S
Sbjct: 334 IRIWDLENGELXYTLQGHTALVGLLRLSDK----FLVSAAADGSIRGWDANDYSRKFSYH 389
Query: 122 AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN 181
+ + +D +L +G +Q ++ R+ K V + ++D Q+ V N +
Sbjct: 390 HTNLSAITTFY--VSDNILVSGSENQFNIYNLRSGKLV---HANILKDADQIWSV-NFKG 443
Query: 182 KVVSASVD 189
K + A+V+
Sbjct: 444 KTLVAAVE 451
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 67 PVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV-----T 121
PV+ +G KG++S+ + P L + S D T WD + + +
Sbjct: 148 PVSRVLTGH-KGYASSCQYV----PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS 202
Query: 122 AGSQEIFCFSFGG-STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ 180
+ ++ S + + ++ C + ++ WD R + H D+ V F P+ Q
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 181 NKVVSASVDGLICTFD--TGGDI--------NDDDLLESVINVGTSV-GKVGFFGETN 227
+ + S DG FD TG + +D+ L V +V S+ G++ F G +N
Sbjct: 263 -RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN 319
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 4/155 (2%)
Query: 101 SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA 160
S D IR ++ + +V A I + + Y+L+ ++ W+W N +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKV 220
E H V V F P + + S +D + + G + L V V
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYV 190
Query: 221 GFFGETNK-HLWCLTHIETLSIWDWKDGQNVASFE 254
++ +K ++ + T+ IWD++ VA+ E
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 37 GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHV 96
G +YV + P D M + +K++ T +GH S V+ F P+ P +
Sbjct: 186 GVNYV-DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH-PTLPII 243
Query: 97 LHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFS 131
+ S S DGT++ W++ ++ ++ G + +C +
Sbjct: 244 I-SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 4/155 (2%)
Query: 101 SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA 160
S D IR ++ + +V A I + + Y+L+ ++ W+W N +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKV 220
E H V V F P + + S +D + + G + L V V
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYV 190
Query: 221 GFFGETNK-HLWCLTHIETLSIWDWKDGQNVASFE 254
++ +K ++ + T+ IWD++ VA+ E
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 37 GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHV 96
G +YV + P D M + +K++ T +GH S V+ F P+ P +
Sbjct: 186 GVNYV-DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH-PTLPII 243
Query: 97 LHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFS 131
+ S S DGT++ W++ ++ ++ G + +C +
Sbjct: 244 I-SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 16/161 (9%)
Query: 101 SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA 160
S D IR ++ + +V A I + + Y+L+ ++ W+W N +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGK- 219
E H V V F P + + S +D + + G +S N + G+
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG---------QSTPNFTLTTGQE 184
Query: 220 -----VGFFGETNK-HLWCLTHIETLSIWDWKDGQNVASFE 254
V ++ +K ++ + T+ IWD++ VA+ E
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 37 GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHV 96
G +YV + P D M + +K++ T +GH S V+ F P+ P +
Sbjct: 186 GVNYV-DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH-PTLPII 243
Query: 97 LHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFS 131
+ S S DGT++ W++ ++ ++ G + +C +
Sbjct: 244 I-SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 37 GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHV 96
G +YV + P D M + +K++ T +GH S V+ F P+ P +
Sbjct: 186 GVNYV-DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH-PTLPII 243
Query: 97 LHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFS 131
+ S S DGT++ W++ ++ ++ G + +C +
Sbjct: 244 I-SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 16/161 (9%)
Query: 101 SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA 160
S D IR ++ + +V A I + + Y+L+ ++ W+W N +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGK- 219
E H V V F P + + S +D + + G +S N + G+
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG---------QSTPNFTLTTGQE 184
Query: 220 -----VGFFGETNK-HLWCLTHIETLSIWDWKDGQNVASFE 254
V ++ +K ++ + T+ IWD++ VA+ E
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 79 HSSTVNQISFSGP-STPHVLHSCSSDGTIRAWDTRSFHEVWSVT-------------AGS 124
+S+++ + FS S + H +S G I ++T + S++ A S
Sbjct: 242 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 301
Query: 125 QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV 170
+ SF S + L +AG +++FWD + K+++ L H +D+
Sbjct: 302 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL-NMHCDDI 346
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 79 HSSTVNQISFSGP-STPHVLHSCSSDGTIRAWDTRSFHEVWSVT-------------AGS 124
+S+++ + FS S + H +S G I ++T + S++ A S
Sbjct: 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291
Query: 125 QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV 170
+ SF S + L +AG +++FWD + K+++ L H +D+
Sbjct: 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL-NMHCDDI 336
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 24/64 (37%)
Query: 96 VLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN 155
V SC SDG I WD + V + C L G + ++ WD R
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214
Query: 156 KKQV 159
+Q+
Sbjct: 215 GRQL 218
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 52 LMAVSLSTNVVKLYSPVTGQY--SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109
L+A + + VKLY + +GH STV ++F PS L SCS D T+R W
Sbjct: 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD-PSGQR-LASCSDDRTVRIW 221
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
Query: 28 LKNSIQTNFGDD--YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ 85
L ++ T GDD VF+ P +D SL+ ++ + HS VN
Sbjct: 263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ--------------AHSQDVNC 308
Query: 86 ISFSGPSTPHVLHSCSSDGTIRAW 109
++++ P P +L SCS DG + W
Sbjct: 309 VAWN-PKEPGLLASCSDDGEVAFW 331
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111
L+AV V+L +G S +GH + +S+S P ++L + S+D ++ WD
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS-PRYDYILATASADSRVKLWDV 216
Query: 112 R 112
R
Sbjct: 217 R 217
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 78 GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR 112
HSS VN ++ + P + SC DG I WDTR
Sbjct: 179 AHSSEVNCVA-ACPGKDTIFLSCGEDGRILLWDTR 212
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 73 SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSF 132
+G+ GH ++ + F+ T +L S S DGT+R W + + SQ I S+
Sbjct: 240 TGKLIGHHGPISVLEFN--DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW 297
Query: 133 GGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV-TQVHFVPNNQNKVVSASVDGL 191
G D +++ ++ W + KQ L S V+ V + + K A +DG
Sbjct: 298 VGD-DKVISCSMDGSVRLW---SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353
Query: 192 ICTFD 196
+ +D
Sbjct: 354 VNVYD 358
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 53 MAVSLSTNVVKLYSPVTGQ--YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110
+A S VK++ G + +GH V Q++++ P ++L SCS D + W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW- 86
Query: 111 TRSFHEVWSVT---AGSQEIFCFSFGGSTDYLLAAGCGS 146
R + W + AG DY L CGS
Sbjct: 87 -REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGS 124
>pdb|4D8M|A Chain A, Crystal Structure Of Bacillus Thuringiensis Cry5b
Nematocidal Toxin
Length = 587
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 183 VVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIW 242
V+SA V + + GD+N D L G K G E N L +
Sbjct: 421 VISAYVPMELVPENVIGDVNADTKLPLTQLKGFPFEKYG--SEYNNRGISL-------VR 471
Query: 243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGEN 283
+W +G N N++S+ Y + C Y +G+N
Sbjct: 472 EWINGNNAVKLSNSQSVGIQITNQTKQKYEIRCRYASKGDN 512
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,177,612
Number of Sequences: 62578
Number of extensions: 597788
Number of successful extensions: 1616
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1417
Number of HSP's gapped (non-prelim): 147
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)