Query 016457
Match_columns 389
No_of_seqs 674 out of 1882
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 07:01:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2E-56 4.4E-61 356.4 27.0 310 12-357 128-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 8.3E-53 1.8E-57 335.8 24.3 292 31-361 107-441 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-52 2.9E-57 338.5 21.3 284 38-357 175-458 (459)
4 KOG0286 G-protein beta subunit 100.0 1.3E-47 2.9E-52 295.8 31.0 289 32-357 48-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 2.8E-48 6E-53 313.6 20.0 268 10-299 186-458 (459)
6 KOG0315 G-protein beta subunit 100.0 6E-45 1.3E-49 275.0 29.0 288 12-326 11-306 (311)
7 KOG0279 G protein beta subunit 100.0 2.2E-44 4.8E-49 276.2 29.7 296 33-360 9-314 (315)
8 KOG0315 G-protein beta subunit 100.0 4.4E-44 9.6E-49 270.3 27.7 272 51-363 11-292 (311)
9 KOG0265 U5 snRNP-specific prot 100.0 1.5E-43 3.2E-48 274.4 27.0 292 30-357 38-336 (338)
10 KOG0284 Polyadenylation factor 100.0 2.9E-45 6.3E-50 294.9 17.6 286 38-361 96-382 (464)
11 KOG0273 Beta-transducin family 100.0 5.8E-43 1.3E-47 286.6 30.1 306 13-359 193-523 (524)
12 KOG0285 Pleiotropic regulator 100.0 8.7E-44 1.9E-48 282.0 23.9 300 31-363 143-443 (460)
13 KOG0295 WD40 repeat-containing 100.0 6.8E-44 1.5E-48 283.1 22.3 291 30-358 99-405 (406)
14 KOG0286 G-protein beta subunit 100.0 2.9E-42 6.2E-47 266.3 29.0 265 13-299 69-343 (343)
15 KOG0645 WD40 repeat protein [G 100.0 4.9E-41 1.1E-45 256.8 30.2 293 32-359 7-311 (312)
16 KOG0279 G protein beta subunit 100.0 8.2E-41 1.8E-45 256.7 29.1 272 13-301 30-313 (315)
17 KOG0316 Conserved WD40 repeat- 100.0 3.9E-41 8.4E-46 252.4 25.4 286 32-359 10-299 (307)
18 KOG0318 WD40 repeat stress pro 100.0 7.8E-40 1.7E-44 271.8 35.7 316 13-362 162-563 (603)
19 KOG0266 WD40 repeat-containing 100.0 2.7E-40 5.9E-45 294.2 32.9 288 38-359 159-454 (456)
20 KOG0282 mRNA splicing factor [ 100.0 6E-42 1.3E-46 281.6 18.5 291 29-357 204-503 (503)
21 KOG0273 Beta-transducin family 100.0 1E-40 2.2E-45 273.5 25.3 287 37-362 177-485 (524)
22 KOG0296 Angio-associated migra 100.0 3.8E-40 8.3E-45 261.9 27.8 295 29-359 54-398 (399)
23 KOG0263 Transcription initiati 100.0 2.4E-41 5.2E-46 294.0 21.6 284 31-364 370-654 (707)
24 cd00200 WD40 WD40 domain, foun 100.0 3.5E-39 7.6E-44 274.3 34.5 285 34-357 4-289 (289)
25 KOG0319 WD40-repeat-containing 100.0 7E-40 1.5E-44 282.4 28.4 316 12-361 118-579 (775)
26 KOG0291 WD40-repeat-containing 100.0 4.2E-39 9.2E-44 278.2 31.7 311 19-361 285-614 (893)
27 KOG0293 WD40 repeat-containing 100.0 2.7E-40 5.8E-45 266.9 22.6 291 34-361 219-515 (519)
28 KOG0284 Polyadenylation factor 100.0 1E-40 2.2E-45 268.8 16.1 267 13-301 110-380 (464)
29 KOG0281 Beta-TrCP (transducin 100.0 1.9E-40 4.1E-45 262.4 15.7 278 38-362 197-480 (499)
30 PLN00181 protein SPA1-RELATED; 100.0 2.1E-37 4.6E-42 295.8 39.7 307 20-358 457-792 (793)
31 KOG0319 WD40-repeat-containing 100.0 4E-39 8.6E-44 277.8 24.7 307 15-361 297-621 (775)
32 KOG0276 Vesicle coat complex C 100.0 6.9E-39 1.5E-43 271.5 25.4 279 38-353 13-293 (794)
33 KOG0291 WD40-repeat-containing 100.0 1.6E-37 3.4E-42 268.6 34.0 287 38-363 265-554 (893)
34 KOG0295 WD40 repeat-containing 100.0 5.6E-39 1.2E-43 255.2 22.5 267 12-300 121-405 (406)
35 KOG0318 WD40 repeat stress pro 100.0 3.2E-37 7E-42 256.3 33.1 333 13-364 73-522 (603)
36 KOG0275 Conserved WD40 repeat- 100.0 2.2E-39 4.7E-44 254.4 17.6 284 38-357 213-507 (508)
37 KOG0316 Conserved WD40 repeat- 100.0 1.1E-37 2.4E-42 233.9 21.7 252 72-362 9-260 (307)
38 KOG0643 Translation initiation 100.0 4.4E-37 9.5E-42 234.8 25.3 292 35-360 6-318 (327)
39 KOG0268 Sof1-like rRNA process 100.0 6.6E-39 1.4E-43 254.8 15.9 308 34-388 61-387 (433)
40 KOG0645 WD40 repeat protein [G 100.0 1.9E-36 4E-41 231.9 28.2 268 13-301 29-311 (312)
41 KOG0278 Serine/threonine kinas 100.0 3.4E-38 7.4E-43 238.7 17.4 283 38-362 14-300 (334)
42 KOG0285 Pleiotropic regulator 100.0 4.5E-37 9.7E-42 244.0 24.5 273 13-302 165-440 (460)
43 KOG0265 U5 snRNP-specific prot 100.0 7E-37 1.5E-41 237.5 25.0 271 10-299 58-336 (338)
44 KOG0263 Transcription initiati 100.0 3.5E-37 7.6E-42 268.2 23.6 260 13-304 392-652 (707)
45 KOG0276 Vesicle coat complex C 100.0 2.4E-37 5.2E-42 262.2 21.8 255 74-363 7-261 (794)
46 KOG0277 Peroxisomal targeting 100.0 6.5E-37 1.4E-41 232.3 21.6 283 42-358 12-308 (311)
47 KOG1188 WD40 repeat protein [G 100.0 1.1E-36 2.5E-41 240.4 22.9 327 51-389 41-376 (376)
48 KOG0313 Microtubule binding pr 100.0 9.1E-36 2E-40 238.2 26.7 290 30-360 97-419 (423)
49 KOG0266 WD40 repeat-containing 100.0 9.2E-36 2E-40 265.3 29.8 266 13-301 173-454 (456)
50 KOG0292 Vesicle coat complex C 100.0 3.3E-36 7.2E-41 264.7 25.7 288 38-361 9-323 (1202)
51 KOG1446 Histone H3 (Lys4) meth 100.0 3E-34 6.6E-39 224.8 32.5 292 33-361 8-305 (311)
52 KOG0277 Peroxisomal targeting 100.0 4.8E-36 1E-40 227.6 21.5 264 19-300 36-308 (311)
53 KOG0281 Beta-TrCP (transducin 100.0 2E-37 4.4E-42 245.3 13.9 267 13-305 209-481 (499)
54 KOG0313 Microtubule binding pr 100.0 2.8E-35 6E-40 235.5 26.0 265 15-301 119-418 (423)
55 KOG0306 WD40-repeat-containing 100.0 4.5E-35 9.7E-40 253.4 29.3 313 12-361 78-582 (888)
56 KOG0305 Anaphase promoting com 100.0 1.9E-35 4E-40 252.8 26.3 280 41-361 180-463 (484)
57 KOG0306 WD40-repeat-containing 100.0 2.9E-35 6.3E-40 254.5 26.9 281 38-361 373-666 (888)
58 KOG0296 Angio-associated migra 100.0 1.9E-34 4.1E-39 229.6 27.9 268 10-301 75-398 (399)
59 KOG0282 mRNA splicing factor [ 100.0 2.3E-36 4.9E-41 248.9 16.8 269 13-299 229-503 (503)
60 cd00200 WD40 WD40 domain, foun 100.0 9.8E-34 2.1E-38 240.7 33.6 265 12-299 22-289 (289)
61 KOG0640 mRNA cleavage stimulat 100.0 3.2E-35 6.8E-40 229.5 21.8 289 38-359 112-426 (430)
62 PLN00181 protein SPA1-RELATED; 100.0 1.8E-33 3.8E-38 268.9 37.8 278 13-300 497-792 (793)
63 KOG0292 Vesicle coat complex C 100.0 1.7E-34 3.7E-39 254.0 27.7 272 12-304 22-324 (1202)
64 KOG1407 WD40 repeat protein [F 100.0 2.9E-34 6.2E-39 218.8 25.3 284 35-359 16-311 (313)
65 KOG0288 WD40 repeat protein Ti 100.0 8.7E-36 1.9E-40 240.8 15.8 282 38-357 175-459 (459)
66 KOG0283 WD40 repeat-containing 100.0 6.8E-35 1.5E-39 256.0 22.5 246 38-302 267-577 (712)
67 KOG0289 mRNA splicing factor [ 100.0 6.8E-34 1.5E-38 231.3 25.7 286 38-358 219-505 (506)
68 KOG0274 Cdc4 and related F-box 100.0 1.3E-33 2.7E-38 250.7 28.7 279 38-365 208-488 (537)
69 KOG0283 WD40 repeat-containing 100.0 2.6E-34 5.6E-39 252.4 22.5 258 74-361 260-578 (712)
70 KOG0310 Conserved WD40 repeat- 100.0 4.7E-34 1E-38 235.6 22.5 297 22-359 10-309 (487)
71 KOG0293 WD40 repeat-containing 100.0 3.9E-34 8.6E-39 231.3 21.2 267 13-302 238-514 (519)
72 KOG0310 Conserved WD40 repeat- 100.0 2.1E-33 4.5E-38 231.8 25.2 261 21-305 48-313 (487)
73 KOG0300 WD40 repeat-containing 100.0 4E-33 8.6E-38 218.6 21.8 295 31-361 140-478 (481)
74 PTZ00421 coronin; Provisional 100.0 1.7E-31 3.6E-36 237.0 32.6 259 40-326 22-309 (493)
75 KOG0647 mRNA export protein (c 100.0 3.7E-32 8.1E-37 211.5 24.7 278 38-347 27-311 (347)
76 KOG0305 Anaphase promoting com 100.0 1.8E-32 4E-37 234.5 25.3 260 20-303 196-463 (484)
77 KOG0274 Cdc4 and related F-box 100.0 4E-32 8.7E-37 241.1 28.4 263 13-305 220-486 (537)
78 KOG0275 Conserved WD40 repeat- 100.0 9.4E-34 2E-38 222.8 15.6 269 9-299 223-507 (508)
79 KOG0278 Serine/threonine kinas 100.0 1E-33 2.2E-38 214.6 14.6 264 16-305 34-301 (334)
80 PTZ00420 coronin; Provisional 100.0 7.1E-31 1.5E-35 234.0 34.5 229 56-305 50-297 (568)
81 KOG0299 U3 snoRNP-associated p 100.0 9E-32 2E-36 220.6 25.8 298 38-361 142-458 (479)
82 PTZ00420 coronin; Provisional 100.0 1.2E-30 2.5E-35 232.6 33.5 247 16-281 49-318 (568)
83 KOG0772 Uncharacterized conser 100.0 1.1E-31 2.4E-36 223.1 25.0 295 34-361 162-490 (641)
84 KOG1408 WD40 repeat protein [F 100.0 1.1E-31 2.3E-36 231.6 25.7 312 19-361 344-715 (1080)
85 KOG0288 WD40 repeat protein Ti 100.0 3.1E-33 6.7E-38 226.1 14.9 262 12-298 188-458 (459)
86 KOG1036 Mitotic spindle checkp 100.0 3.7E-31 8.1E-36 206.6 25.6 277 38-348 13-293 (323)
87 PTZ00421 coronin; Provisional 100.0 1.6E-30 3.5E-35 230.7 33.3 268 14-303 35-333 (493)
88 KOG0973 Histone transcription 100.0 1.8E-31 4E-36 240.5 25.6 288 38-361 13-357 (942)
89 KOG1539 WD repeat protein [Gen 100.0 2.7E-30 5.8E-35 226.4 31.3 323 16-361 177-608 (910)
90 KOG0641 WD40 repeat protein [G 100.0 1.4E-29 3.1E-34 189.6 30.0 293 31-359 25-349 (350)
91 KOG0294 WD40 repeat-containing 100.0 1.3E-30 2.9E-35 204.0 25.4 247 72-361 35-283 (362)
92 KOG0268 Sof1-like rRNA process 100.0 3.8E-32 8.3E-37 216.4 16.1 269 7-303 75-347 (433)
93 KOG0308 Conserved WD40 repeat- 100.0 5.9E-32 1.3E-36 230.6 18.3 281 43-361 29-329 (735)
94 KOG0264 Nucleosome remodeling 100.0 5.9E-31 1.3E-35 215.7 22.2 262 35-302 121-405 (422)
95 KOG0308 Conserved WD40 repeat- 100.0 4.3E-31 9.2E-36 225.4 21.3 324 14-361 40-395 (735)
96 KOG1446 Histone H3 (Lys4) meth 100.0 2.1E-29 4.7E-34 197.7 28.4 256 71-363 5-266 (311)
97 KOG0643 Translation initiation 100.0 8.4E-31 1.8E-35 200.6 20.0 267 13-303 24-319 (327)
98 KOG1407 WD40 repeat protein [F 100.0 9.5E-30 2.1E-34 194.2 24.8 255 12-292 33-293 (313)
99 KOG0772 Uncharacterized conser 100.0 1.3E-30 2.9E-35 216.7 21.9 267 13-299 181-485 (641)
100 KOG0294 WD40 repeat-containing 100.0 5.1E-30 1.1E-34 200.8 23.5 242 38-304 43-284 (362)
101 KOG0264 Nucleosome remodeling 100.0 2.6E-30 5.6E-35 211.9 22.6 258 79-362 123-407 (422)
102 KOG0301 Phospholipase A2-activ 100.0 7.2E-30 1.6E-34 219.5 25.4 280 32-361 7-290 (745)
103 KOG0289 mRNA splicing factor [ 100.0 1.4E-29 3E-34 206.4 25.8 266 12-300 232-505 (506)
104 KOG1539 WD repeat protein [Gen 100.0 1.4E-29 3E-34 222.0 27.5 307 13-359 216-648 (910)
105 KOG2096 WD40 repeat protein [G 100.0 1.3E-29 2.8E-34 198.9 23.9 305 22-358 62-401 (420)
106 KOG0973 Histone transcription 100.0 2.2E-29 4.7E-34 227.2 24.8 274 12-305 26-359 (942)
107 KOG0300 WD40 repeat-containing 100.0 2E-29 4.4E-34 197.9 20.8 279 7-303 156-478 (481)
108 KOG0301 Phospholipase A2-activ 100.0 4.2E-29 9.2E-34 214.8 23.1 258 13-304 27-291 (745)
109 KOG0639 Transducin-like enhanc 100.0 2E-29 4.2E-34 209.3 18.3 256 19-300 438-703 (705)
110 KOG0639 Transducin-like enhanc 100.0 2.6E-29 5.6E-34 208.6 18.8 284 32-358 413-703 (705)
111 KOG0299 U3 snoRNP-associated p 100.0 1.3E-28 2.8E-33 202.2 21.6 249 73-361 135-412 (479)
112 KOG1332 Vesicle coat complex C 100.0 4.7E-29 1E-33 188.7 17.2 249 38-302 11-287 (299)
113 KOG0269 WD40 repeat-containing 100.0 3.2E-29 6.9E-34 218.0 18.1 288 38-361 39-342 (839)
114 KOG0647 mRNA export protein (c 100.0 1E-27 2.3E-32 186.8 24.6 249 14-282 43-306 (347)
115 KOG1273 WD40 repeat protein [G 100.0 6.2E-28 1.3E-32 189.2 23.4 281 41-361 26-324 (405)
116 KOG0646 WD40 repeat protein [G 100.0 3.3E-28 7.1E-33 200.2 22.5 272 60-361 18-309 (476)
117 KOG0321 WD40 repeat-containing 100.0 4.3E-28 9.3E-33 206.8 23.4 294 42-365 53-397 (720)
118 KOG2048 WD40 repeat protein [G 100.0 4.7E-27 1E-31 201.8 29.1 289 38-360 25-320 (691)
119 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.8E-26 3.9E-31 197.8 33.2 276 51-362 2-282 (300)
120 KOG4283 Transcription-coupled 100.0 1.4E-27 2.9E-32 185.7 23.0 292 38-359 43-365 (397)
121 KOG0640 mRNA cleavage stimulat 100.0 3.1E-28 6.7E-33 190.6 19.3 267 13-301 126-426 (430)
122 KOG0646 WD40 repeat protein [G 100.0 2.5E-28 5.3E-33 200.9 19.6 242 21-280 61-330 (476)
123 KOG1036 Mitotic spindle checkp 100.0 2E-27 4.3E-32 185.9 23.2 253 16-291 30-294 (323)
124 KOG4328 WD40 protein [Function 100.0 8.2E-28 1.8E-32 197.4 21.9 296 38-359 186-495 (498)
125 KOG2055 WD40 repeat protein [G 100.0 1.6E-27 3.5E-32 195.9 23.6 283 38-359 213-512 (514)
126 KOG1332 Vesicle coat complex C 100.0 4.1E-28 8.8E-33 183.6 18.5 230 13-245 25-286 (299)
127 KOG2106 Uncharacterized conser 100.0 4.3E-26 9.4E-31 189.6 31.6 299 18-359 177-521 (626)
128 KOG2106 Uncharacterized conser 100.0 1.3E-26 2.8E-31 192.7 28.3 315 12-358 258-625 (626)
129 KOG0270 WD40 repeat-containing 100.0 1.6E-27 3.4E-32 195.1 22.1 251 38-305 173-453 (463)
130 KOG1408 WD40 repeat protein [F 100.0 5.7E-28 1.2E-32 208.7 20.1 274 12-302 393-714 (1080)
131 KOG0269 WD40 repeat-containing 100.0 1.3E-28 2.8E-33 214.3 16.2 244 40-302 89-341 (839)
132 KOG0650 WD40 repeat nucleolar 100.0 8E-27 1.7E-31 197.7 25.3 291 32-356 393-732 (733)
133 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.5E-25 3.4E-30 192.0 34.0 264 15-305 5-283 (300)
134 KOG1063 RNA polymerase II elon 100.0 1.3E-26 2.7E-31 199.6 26.2 319 12-361 207-650 (764)
135 KOG1274 WD40 repeat protein [G 100.0 3.6E-26 7.9E-31 202.8 28.0 246 38-302 13-263 (933)
136 KOG0641 WD40 repeat protein [G 100.0 1.5E-25 3.3E-30 168.1 26.4 247 38-301 89-349 (350)
137 KOG2445 Nuclear pore complex c 100.0 1.2E-25 2.6E-30 175.8 26.0 251 38-303 13-320 (361)
138 KOG4378 Nuclear protein COP1 [ 100.0 1.4E-26 3E-31 192.2 20.4 280 17-326 8-299 (673)
139 KOG0267 Microtubule severing p 100.0 2.3E-28 4.9E-33 211.3 9.9 256 51-351 5-260 (825)
140 KOG0302 Ribosome Assembly prot 100.0 3.7E-26 8.1E-31 183.3 20.5 227 10-239 164-433 (440)
141 KOG0270 WD40 repeat-containing 99.9 2.1E-25 4.5E-30 182.7 24.2 281 43-361 130-451 (463)
142 KOG1063 RNA polymerase II elon 99.9 2.3E-25 4.9E-30 192.0 25.6 322 13-359 281-763 (764)
143 KOG2055 WD40 repeat protein [G 99.9 1.1E-25 2.5E-30 185.1 22.6 274 12-301 226-512 (514)
144 KOG2048 WD40 repeat protein [G 99.9 3.3E-24 7.2E-29 184.5 31.7 313 14-364 40-366 (691)
145 KOG0267 Microtubule severing p 99.9 5.9E-28 1.3E-32 208.7 8.5 245 22-292 15-259 (825)
146 KOG0302 Ribosome Assembly prot 99.9 1.7E-25 3.7E-30 179.6 20.6 254 38-298 151-435 (440)
147 KOG0307 Vesicle coat complex C 99.9 7.4E-27 1.6E-31 212.0 13.8 272 15-304 33-330 (1049)
148 KOG1274 WD40 repeat protein [G 99.9 5.4E-25 1.2E-29 195.5 24.9 252 77-360 10-263 (933)
149 KOG2445 Nuclear pore complex c 99.9 2.3E-24 5E-29 168.7 24.7 259 77-361 10-320 (361)
150 KOG4283 Transcription-coupled 99.9 3.5E-24 7.7E-29 166.8 23.4 269 14-301 59-365 (397)
151 KOG0321 WD40 repeat-containing 99.9 7.4E-25 1.6E-29 187.2 21.4 273 13-304 66-394 (720)
152 KOG1034 Transcriptional repres 99.9 2.4E-24 5.1E-29 170.1 22.2 300 38-358 38-382 (385)
153 KOG2096 WD40 repeat protein [G 99.9 5.5E-24 1.2E-28 167.5 23.0 268 12-300 99-401 (420)
154 KOG4378 Nuclear protein COP1 [ 99.9 1E-24 2.2E-29 181.2 18.2 247 14-280 50-304 (673)
155 KOG1273 WD40 repeat protein [G 99.9 5.6E-24 1.2E-28 167.2 21.2 248 83-361 26-282 (405)
156 KOG1007 WD repeat protein TSSC 99.9 5.7E-24 1.2E-28 165.1 20.7 278 18-302 37-362 (370)
157 KOG1445 Tumor-specific antigen 99.9 4E-24 8.7E-29 182.9 21.5 143 12-156 93-250 (1012)
158 KOG1538 Uncharacterized conser 99.9 4.9E-24 1.1E-28 183.4 20.5 280 38-361 12-295 (1081)
159 KOG0307 Vesicle coat complex C 99.9 2.5E-25 5.3E-30 202.2 12.4 286 43-362 11-330 (1049)
160 KOG2919 Guanine nucleotide-bin 99.9 1.1E-22 2.3E-27 160.6 23.8 277 39-349 50-360 (406)
161 KOG4227 WD40 repeat protein [G 99.9 6.9E-23 1.5E-27 165.8 22.8 301 38-359 56-387 (609)
162 KOG1034 Transcriptional repres 99.9 4.5E-23 9.7E-28 163.0 20.6 269 17-301 60-383 (385)
163 KOG1009 Chromatin assembly com 99.9 9.3E-23 2E-27 165.5 21.4 273 13-305 28-376 (434)
164 KOG0650 WD40 repeat nucleolar 99.9 7.4E-23 1.6E-27 173.9 21.4 266 13-298 414-732 (733)
165 KOG1009 Chromatin assembly com 99.9 2.1E-22 4.5E-27 163.5 22.2 291 38-361 13-374 (434)
166 KOG4328 WD40 protein [Function 99.9 1.6E-22 3.5E-27 166.5 20.3 269 67-361 173-452 (498)
167 KOG1587 Cytoplasmic dynein int 99.9 4.4E-22 9.5E-27 176.0 24.3 272 60-361 222-518 (555)
168 KOG1517 Guanine nucleotide bin 99.9 1.5E-21 3.3E-26 176.2 25.2 301 40-361 1066-1383(1387)
169 COG2319 FOG: WD40 repeat [Gene 99.9 1.3E-19 2.9E-24 163.2 37.6 302 18-360 131-443 (466)
170 KOG0642 Cell-cycle nuclear pro 99.9 1.1E-22 2.3E-27 171.8 15.6 257 75-361 289-563 (577)
171 KOG0649 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 143.6 24.0 236 39-302 11-275 (325)
172 KOG0644 Uncharacterized conser 99.9 1.8E-23 4E-28 184.0 10.2 281 34-361 185-470 (1113)
173 KOG0290 Conserved WD40 repeat- 99.9 5.7E-21 1.2E-25 148.7 22.7 297 31-356 37-362 (364)
174 KOG0642 Cell-cycle nuclear pro 99.9 2.3E-22 5E-27 169.8 15.4 248 38-305 294-565 (577)
175 COG2319 FOG: WD40 repeat [Gene 99.9 2.4E-19 5.3E-24 161.5 35.3 288 38-362 65-362 (466)
176 KOG0322 G-protein beta subunit 99.9 1.1E-21 2.3E-26 150.7 15.9 294 31-358 6-322 (323)
177 KOG1587 Cytoplasmic dynein int 99.9 2.1E-20 4.5E-25 165.5 26.2 264 20-302 221-517 (555)
178 KOG2919 Guanine nucleotide-bin 99.9 2.4E-20 5.1E-25 147.5 22.8 257 14-292 64-361 (406)
179 KOG1310 WD40 repeat protein [G 99.9 1.9E-20 4.1E-25 158.0 23.0 215 32-248 43-306 (758)
180 KOG1523 Actin-related protein 99.9 6.3E-20 1.4E-24 144.9 23.6 207 38-248 10-239 (361)
181 KOG0303 Actin-binding protein 99.9 1.3E-20 2.8E-25 152.7 19.7 211 32-249 74-298 (472)
182 KOG1334 WD40 repeat protein [G 99.9 2.9E-21 6.3E-26 160.5 16.4 299 34-361 137-468 (559)
183 PRK11028 6-phosphogluconolacto 99.9 9.3E-19 2E-23 151.5 32.5 275 55-360 7-305 (330)
184 KOG1188 WD40 repeat protein [G 99.9 1.5E-20 3.2E-25 149.7 18.8 270 14-302 43-347 (376)
185 KOG2110 Uncharacterized conser 99.9 1.5E-18 3.3E-23 139.7 30.0 303 38-367 5-338 (391)
186 KOG0303 Actin-binding protein 99.9 2.5E-20 5.5E-25 151.0 18.2 211 74-304 75-297 (472)
187 KOG1538 Uncharacterized conser 99.9 3E-20 6.4E-25 160.4 19.0 258 16-302 28-294 (1081)
188 KOG1007 WD repeat protein TSSC 99.9 5.2E-20 1.1E-24 143.3 17.9 221 22-245 94-361 (370)
189 KOG1240 Protein kinase contain 99.9 4.6E-19 1E-23 162.7 26.3 269 26-303 1034-1336(1431)
190 KOG0290 Conserved WD40 repeat- 99.9 1E-19 2.3E-24 141.8 17.9 217 17-236 117-357 (364)
191 PRK11028 6-phosphogluconolacto 99.8 8.7E-18 1.9E-22 145.4 31.1 268 17-301 8-304 (330)
192 KOG4227 WD40 repeat protein [G 99.8 1.9E-19 4.2E-24 146.0 18.2 257 74-361 50-324 (609)
193 KOG1963 WD40 repeat protein [G 99.8 5.6E-18 1.2E-22 150.9 29.0 300 39-361 206-540 (792)
194 KOG1517 Guanine nucleotide bin 99.8 1E-18 2.2E-23 158.2 23.6 277 13-304 1078-1384(1387)
195 KOG1524 WD40 repeat-containing 99.8 1.2E-19 2.6E-24 152.8 16.6 263 38-355 14-282 (737)
196 KOG1445 Tumor-specific antigen 99.8 3E-19 6.4E-24 153.5 15.8 228 17-248 599-847 (1012)
197 KOG2110 Uncharacterized conser 99.8 2.2E-17 4.8E-22 133.1 25.0 237 80-361 5-250 (391)
198 KOG1963 WD40 repeat protein [G 99.8 3.7E-17 8E-22 145.7 28.6 290 43-361 21-377 (792)
199 KOG1272 WD40-repeat-containing 99.8 9.8E-20 2.1E-24 150.6 11.5 232 38-299 129-360 (545)
200 KOG0649 WD40 repeat protein [G 99.8 1.7E-16 3.7E-21 121.0 26.9 255 13-298 24-313 (325)
201 KOG1524 WD40 repeat-containing 99.8 9.7E-19 2.1E-23 147.4 15.7 208 51-298 76-283 (737)
202 KOG2111 Uncharacterized conser 99.8 2.5E-16 5.5E-21 124.7 27.7 296 40-361 7-324 (346)
203 PF02239 Cytochrom_D1: Cytochr 99.8 5.2E-16 1.1E-20 134.0 31.7 309 18-363 13-351 (369)
204 KOG1310 WD40 repeat protein [G 99.8 1.3E-18 2.9E-23 147.0 15.1 228 72-305 42-307 (758)
205 KOG0322 G-protein beta subunit 99.8 3.1E-18 6.7E-23 131.9 15.6 264 13-300 27-322 (323)
206 KOG0771 Prolactin regulatory e 99.8 2.1E-18 4.6E-23 141.3 14.7 202 84-302 148-355 (398)
207 KOG1240 Protein kinase contain 99.8 5.4E-17 1.2E-21 149.4 25.1 275 65-361 1034-1336(1431)
208 PRK01742 tolB translocation pr 99.8 4.1E-17 9E-22 145.5 23.3 230 59-326 183-421 (429)
209 PRK01742 tolB translocation pr 99.8 5.5E-17 1.2E-21 144.7 23.9 231 19-280 182-426 (429)
210 KOG0644 Uncharacterized conser 99.8 1.5E-19 3.2E-24 159.7 7.0 248 71-362 181-429 (1113)
211 KOG4497 Uncharacterized conser 99.8 6.3E-17 1.4E-21 128.7 20.9 288 43-361 13-393 (447)
212 KOG0771 Prolactin regulatory e 99.8 5.3E-18 1.1E-22 139.0 14.7 196 42-246 148-355 (398)
213 KOG1523 Actin-related protein 99.8 1.7E-16 3.6E-21 125.8 20.8 213 79-304 9-239 (361)
214 KOG1354 Serine/threonine prote 99.8 9.1E-17 2E-21 128.5 18.0 313 38-356 25-431 (433)
215 KOG1334 WD40 repeat protein [G 99.8 1.7E-17 3.6E-22 138.4 14.1 270 72-361 134-426 (559)
216 KOG2394 WD40 protein DMR-N9 [G 99.7 2.5E-16 5.4E-21 133.1 18.7 252 88-362 129-455 (636)
217 KOG1272 WD40-repeat-containing 99.7 4.2E-18 9.1E-23 141.1 7.9 252 19-297 149-405 (545)
218 KOG2111 Uncharacterized conser 99.7 2.2E-15 4.8E-20 119.4 22.6 237 82-362 7-259 (346)
219 KOG2139 WD40 repeat protein [G 99.7 1.3E-14 2.9E-19 117.0 26.7 227 14-247 113-385 (445)
220 KOG3881 Uncharacterized conser 99.7 4.1E-16 8.8E-21 126.8 17.5 250 79-361 54-322 (412)
221 KOG3881 Uncharacterized conser 99.7 1.2E-15 2.6E-20 124.1 20.0 244 38-305 55-324 (412)
222 KOG2139 WD40 repeat protein [G 99.7 7.7E-15 1.7E-19 118.4 24.1 295 38-360 98-432 (445)
223 PRK03629 tolB translocation pr 99.7 1.6E-14 3.4E-19 128.7 28.8 229 61-326 180-423 (429)
224 KOG2321 WD40 repeat protein [G 99.7 3.1E-15 6.8E-20 127.5 20.7 265 14-302 67-344 (703)
225 PRK03629 tolB translocation pr 99.7 2.2E-14 4.8E-19 127.7 27.3 233 20-279 178-427 (429)
226 KOG2321 WD40 repeat protein [G 99.7 6.6E-15 1.4E-19 125.6 22.3 285 38-361 51-345 (703)
227 PF02239 Cytochrom_D1: Cytochr 99.7 4.6E-13 1E-17 115.8 34.2 278 51-361 6-304 (369)
228 PRK04922 tolB translocation pr 99.7 3.1E-14 6.6E-19 127.4 26.0 233 20-279 183-432 (433)
229 KOG2394 WD40 protein DMR-N9 [G 99.7 2.6E-15 5.6E-20 127.1 17.4 170 48-224 183-384 (636)
230 KOG1354 Serine/threonine prote 99.7 1E-15 2.3E-20 122.5 13.9 269 79-361 24-361 (433)
231 PRK04922 tolB translocation pr 99.7 2.9E-14 6.4E-19 127.5 25.0 215 60-303 184-413 (433)
232 KOG1409 Uncharacterized conser 99.7 1E-14 2.2E-19 116.9 19.0 226 11-247 36-272 (404)
233 KOG0280 Uncharacterized conser 99.7 2.5E-14 5.4E-19 112.3 20.5 272 59-360 45-334 (339)
234 PRK05137 tolB translocation pr 99.7 1.7E-13 3.7E-18 122.9 28.8 217 61-305 183-416 (435)
235 PRK02889 tolB translocation pr 99.7 7.6E-14 1.6E-18 124.5 25.7 232 60-326 176-420 (427)
236 PRK05137 tolB translocation pr 99.7 1.3E-13 2.9E-18 123.5 27.1 217 20-249 181-416 (435)
237 KOG4497 Uncharacterized conser 99.7 1.8E-13 3.9E-18 109.3 23.3 280 38-355 48-428 (447)
238 PRK02889 tolB translocation pr 99.7 1.1E-13 2.4E-18 123.4 25.0 233 20-279 175-424 (427)
239 PF08662 eIF2A: Eukaryotic tra 99.7 3E-14 6.4E-19 112.0 18.9 148 43-199 10-180 (194)
240 KOG2315 Predicted translation 99.6 1.3E-13 2.8E-18 117.6 23.5 281 38-361 34-392 (566)
241 KOG4547 WD40 repeat-containing 99.6 2.1E-13 4.6E-18 117.1 23.8 187 9-200 3-222 (541)
242 KOG0309 Conserved WD40 repeat- 99.6 1.1E-14 2.4E-19 127.9 15.9 303 38-361 24-341 (1081)
243 TIGR02658 TTQ_MADH_Hv methylam 99.6 1E-11 2.2E-16 105.0 32.9 270 60-361 27-332 (352)
244 PF10282 Lactonase: Lactonase, 99.6 2.2E-11 4.7E-16 105.7 34.3 284 53-360 2-323 (345)
245 KOG0974 WD-repeat protein WDR6 99.6 1.1E-13 2.4E-18 126.1 17.5 265 51-365 18-294 (967)
246 TIGR02800 propeller_TolB tol-p 99.6 4.9E-12 1.1E-16 113.6 27.8 212 61-301 171-397 (417)
247 KOG0280 Uncharacterized conser 99.6 2.6E-12 5.6E-17 101.2 21.8 264 19-302 44-334 (339)
248 PF08662 eIF2A: Eukaryotic tra 99.6 6.4E-13 1.4E-17 104.5 18.5 151 128-303 9-181 (194)
249 TIGR02800 propeller_TolB tol-p 99.6 7.1E-12 1.5E-16 112.5 26.9 219 20-253 169-404 (417)
250 KOG0974 WD-repeat protein WDR6 99.5 8.1E-12 1.8E-16 114.2 25.7 180 13-199 101-289 (967)
251 PF10282 Lactonase: Lactonase, 99.5 3.1E-10 6.8E-15 98.5 34.7 266 19-301 11-322 (345)
252 KOG1409 Uncharacterized conser 99.5 1.8E-12 3.9E-17 104.3 18.8 257 71-368 15-279 (404)
253 KOG1064 RAVE (regulator of V-A 99.5 1.6E-13 3.4E-18 131.4 14.4 212 23-255 2192-2408(2439)
254 COG2706 3-carboxymuconate cycl 99.5 3.6E-10 7.9E-15 92.2 31.1 277 59-361 15-323 (346)
255 KOG1064 RAVE (regulator of V-A 99.5 1.8E-13 3.8E-18 131.1 13.8 228 79-352 2207-2439(2439)
256 PRK00178 tolB translocation pr 99.5 3E-11 6.5E-16 108.6 27.7 214 61-302 180-407 (430)
257 COG5170 CDC55 Serine/threonine 99.5 1E-13 2.2E-18 109.9 9.7 303 38-361 26-369 (460)
258 PRK00178 tolB translocation pr 99.5 3.1E-11 6.7E-16 108.5 26.8 218 22-254 180-414 (430)
259 PRK04792 tolB translocation pr 99.5 2.5E-11 5.5E-16 108.7 25.9 232 21-279 198-446 (448)
260 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.9E-10 1.1E-14 95.0 31.9 263 21-305 27-334 (352)
261 PRK04792 tolB translocation pr 99.5 2.5E-11 5.5E-16 108.7 25.5 214 61-302 199-426 (448)
262 KOG2315 Predicted translation 99.5 3.5E-11 7.6E-16 103.0 24.6 256 20-304 104-393 (566)
263 KOG2041 WD40 repeat protein [G 99.5 3.8E-12 8.1E-17 112.0 19.2 283 38-359 14-337 (1189)
264 TIGR03300 assembly_YfgL outer 99.5 2E-10 4.2E-15 101.6 30.7 259 49-357 104-377 (377)
265 KOG4547 WD40 repeat-containing 99.5 2.8E-11 6E-16 104.3 23.3 191 47-246 2-221 (541)
266 COG5354 Uncharacterized protei 99.5 1.5E-10 3.2E-15 98.2 27.1 293 21-361 53-397 (561)
267 TIGR03300 assembly_YfgL outer 99.4 2.3E-10 5E-15 101.1 27.5 265 50-363 65-342 (377)
268 PRK01029 tolB translocation pr 99.4 2.3E-10 5E-15 101.8 26.9 223 20-253 164-411 (428)
269 KOG2314 Translation initiation 99.4 1.4E-10 3E-15 99.4 23.1 282 38-361 249-575 (698)
270 KOG2314 Translation initiation 99.4 1.8E-10 3.9E-15 98.7 23.3 281 41-360 213-526 (698)
271 PRK01029 tolB translocation pr 99.4 3.5E-10 7.6E-15 100.6 25.8 224 61-305 166-407 (428)
272 KOG1912 WD40 repeat protein [G 99.4 6.9E-11 1.5E-15 105.1 20.7 248 39-302 16-305 (1062)
273 PF04762 IKI3: IKI3 family; I 99.4 1.2E-09 2.6E-14 105.1 30.0 299 17-361 93-458 (928)
274 KOG4190 Uncharacterized conser 99.4 5.4E-12 1.2E-16 108.0 10.9 211 34-255 730-958 (1034)
275 COG5354 Uncharacterized protei 99.4 5.1E-10 1.1E-14 95.0 22.4 280 38-361 32-350 (561)
276 PF08450 SGL: SMP-30/Gluconola 99.4 1.5E-08 3.2E-13 83.9 31.2 223 43-289 4-245 (246)
277 COG2706 3-carboxymuconate cycl 99.4 2E-08 4.4E-13 82.2 30.2 270 20-302 15-322 (346)
278 PLN02919 haloacid dehalogenase 99.3 4.8E-09 1E-13 102.9 31.7 257 84-361 571-890 (1057)
279 KOG4532 WD40-like repeat conta 99.3 2.2E-09 4.7E-14 84.0 22.9 245 49-302 83-332 (344)
280 KOG0309 Conserved WD40 repeat- 99.3 2.9E-11 6.4E-16 106.8 13.8 272 14-303 39-341 (1081)
281 PLN02919 haloacid dehalogenase 99.3 7.4E-09 1.6E-13 101.6 31.6 255 43-305 572-892 (1057)
282 KOG4714 Nucleoporin [Nuclear s 99.3 7E-11 1.5E-15 91.7 13.9 199 41-246 39-255 (319)
283 COG4946 Uncharacterized protei 99.3 4.9E-08 1.1E-12 82.7 30.7 172 49-234 331-507 (668)
284 KOG4190 Uncharacterized conser 99.3 1.8E-11 4E-16 104.8 9.1 249 73-359 728-988 (1034)
285 PRK11138 outer membrane biogen 99.3 3.7E-08 8E-13 87.5 30.3 261 50-358 120-393 (394)
286 KOG3914 WD repeat protein WDR4 99.3 1.8E-10 3.8E-15 95.0 13.8 157 40-202 64-227 (390)
287 KOG2695 WD40 repeat protein [G 99.3 5E-11 1.1E-15 96.2 10.0 152 138-305 226-380 (425)
288 KOG3914 WD repeat protein WDR4 99.2 3.4E-10 7.5E-15 93.3 13.6 170 170-373 65-237 (390)
289 KOG2041 WD40 repeat protein [G 99.2 5.7E-10 1.2E-14 98.7 15.6 238 80-350 14-279 (1189)
290 PRK04043 tolB translocation pr 99.2 9E-08 2E-12 84.8 29.4 216 60-304 169-403 (419)
291 KOG4532 WD40-like repeat conta 99.2 1.1E-08 2.4E-13 80.1 20.1 243 95-361 85-333 (344)
292 PF13360 PQQ_2: PQQ-like domai 99.2 4.4E-08 9.6E-13 80.8 24.7 218 59-305 2-234 (238)
293 KOG0882 Cyclophilin-related pe 99.2 1.1E-09 2.4E-14 91.6 14.7 300 38-356 9-369 (558)
294 KOG1275 PAB-dependent poly(A) 99.2 1.6E-09 3.5E-14 98.4 16.1 186 50-244 147-341 (1118)
295 PF15492 Nbas_N: Neuroblastoma 99.2 2.2E-07 4.8E-12 74.0 26.1 230 43-305 2-263 (282)
296 PF04762 IKI3: IKI3 family; I 99.2 3.4E-07 7.5E-12 88.5 32.4 254 40-303 211-521 (928)
297 KOG1912 WD40 repeat protein [G 99.1 9.7E-09 2.1E-13 91.9 19.8 324 10-361 78-553 (1062)
298 KOG4714 Nucleoporin [Nuclear s 99.1 1E-09 2.2E-14 85.4 11.7 148 49-199 100-255 (319)
299 PF13360 PQQ_2: PQQ-like domai 99.1 2E-07 4.2E-12 76.9 25.9 216 20-251 2-236 (238)
300 KOG2695 WD40 repeat protein [G 99.1 3.6E-10 7.8E-15 91.3 8.7 144 17-163 230-385 (425)
301 PRK11138 outer membrane biogen 99.1 2.3E-07 5.1E-12 82.4 26.5 265 49-362 68-356 (394)
302 KOG1832 HIV-1 Vpr-binding prot 99.1 5.5E-11 1.2E-15 107.3 3.4 216 31-282 1093-1314(1516)
303 PRK04043 tolB translocation pr 99.1 7.3E-07 1.6E-11 79.1 28.8 211 21-246 169-401 (419)
304 PF15492 Nbas_N: Neuroblastoma 99.1 1.2E-07 2.7E-12 75.4 21.0 199 40-255 45-269 (282)
305 KOG1645 RING-finger-containing 99.1 2.1E-08 4.6E-13 83.0 17.1 267 62-360 175-462 (463)
306 COG4946 Uncharacterized protei 99.1 2.1E-07 4.5E-12 79.0 22.9 142 38-185 359-505 (668)
307 PF07433 DUF1513: Protein of u 99.0 1.2E-06 2.6E-11 72.0 25.4 232 39-291 5-276 (305)
308 KOG1832 HIV-1 Vpr-binding prot 99.0 2.4E-10 5.2E-15 103.4 3.8 201 71-305 1092-1295(1516)
309 KOG1275 PAB-dependent poly(A) 99.0 2.4E-08 5.2E-13 91.0 15.8 180 95-299 148-340 (1118)
310 PF08450 SGL: SMP-30/Gluconola 99.0 5.4E-06 1.2E-10 68.7 28.1 209 85-326 4-230 (246)
311 KOG1645 RING-finger-containing 99.0 1.3E-07 2.7E-12 78.5 17.7 242 38-301 193-461 (463)
312 PF14583 Pectate_lyase22: Olig 98.9 5E-06 1.1E-10 70.6 27.0 284 45-360 42-382 (386)
313 PF00400 WD40: WD domain, G-be 98.9 7.2E-09 1.6E-13 58.2 6.4 39 70-110 1-39 (39)
314 KOG3617 WD40 and TPR repeat-co 98.9 1.3E-07 2.8E-12 85.8 15.9 194 43-254 20-228 (1416)
315 cd00216 PQQ_DH Dehydrogenases 98.9 7E-06 1.5E-10 74.9 27.2 279 50-363 61-428 (488)
316 KOG1920 IkappaB kinase complex 98.8 1.1E-05 2.3E-10 76.7 28.1 241 38-301 68-365 (1265)
317 KOG2066 Vacuolar assembly/sort 98.8 2.8E-07 6E-12 83.2 16.9 201 23-245 24-233 (846)
318 PF07433 DUF1513: Protein of u 98.8 1.7E-05 3.6E-10 65.5 25.1 208 82-305 6-251 (305)
319 COG5170 CDC55 Serine/threonine 98.8 4.8E-08 1E-12 78.3 9.9 250 79-361 25-311 (460)
320 KOG2114 Vacuolar assembly/sort 98.8 3.1E-06 6.7E-11 77.3 22.4 209 87-321 30-257 (933)
321 KOG4649 PQQ (pyrrolo-quinoline 98.8 3.6E-05 7.8E-10 60.8 28.0 105 49-156 62-167 (354)
322 PF00400 WD40: WD domain, G-be 98.8 5.2E-08 1.1E-12 54.7 6.8 39 114-152 1-39 (39)
323 cd00216 PQQ_DH Dehydrogenases 98.8 3.7E-05 7.9E-10 70.2 28.5 235 51-305 111-428 (488)
324 PF06433 Me-amine-dh_H: Methyl 98.8 7.6E-05 1.6E-09 62.4 29.6 262 21-305 17-324 (342)
325 KOG2114 Vacuolar assembly/sort 98.8 2.6E-06 5.5E-11 77.8 20.2 201 46-254 31-252 (933)
326 PF08596 Lgl_C: Lethal giant l 98.7 1.9E-05 4.2E-10 69.0 24.5 228 40-282 3-319 (395)
327 PF06433 Me-amine-dh_H: Methyl 98.7 8E-05 1.7E-09 62.3 26.4 274 60-363 17-324 (342)
328 PF00930 DPPIV_N: Dipeptidyl p 98.7 2.1E-05 4.6E-10 68.7 23.9 223 47-291 1-301 (353)
329 KOG1008 Uncharacterized conser 98.7 1.6E-08 3.4E-13 88.8 4.1 200 38-245 56-275 (783)
330 PF04053 Coatomer_WDAD: Coatom 98.7 6.4E-05 1.4E-09 66.8 26.3 223 38-302 32-263 (443)
331 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00013 2.9E-09 57.7 26.4 142 50-198 23-165 (354)
332 PRK02888 nitrous-oxide reducta 98.6 8.3E-05 1.8E-09 67.3 24.9 230 52-302 68-405 (635)
333 KOG2066 Vacuolar assembly/sort 98.6 9E-06 1.9E-10 73.8 18.1 192 80-302 39-234 (846)
334 PF06977 SdiA-regulated: SdiA- 98.6 0.0002 4.3E-09 58.3 24.1 202 33-242 15-247 (248)
335 KOG0882 Cyclophilin-related pe 98.6 8.1E-07 1.7E-11 75.0 10.5 216 123-361 8-233 (558)
336 KOG3621 WD40 repeat-containing 98.5 3.6E-05 7.8E-10 69.1 20.9 154 38-198 33-197 (726)
337 PF02897 Peptidase_S9_N: Proly 98.5 0.00075 1.6E-08 60.7 29.4 245 42-305 127-408 (414)
338 KOG1008 Uncharacterized conser 98.5 3.4E-08 7.4E-13 86.7 1.2 208 80-302 56-276 (783)
339 PF06977 SdiA-regulated: SdiA- 98.5 0.00023 5E-09 57.9 22.9 213 75-298 16-247 (248)
340 PF08596 Lgl_C: Lethal giant l 98.5 0.00011 2.3E-09 64.5 22.5 209 82-305 3-294 (395)
341 KOG1920 IkappaB kinase complex 98.5 4.1E-05 8.9E-10 72.9 20.5 177 17-199 86-323 (1265)
342 KOG3617 WD40 and TPR repeat-co 98.4 1.9E-05 4E-10 72.4 17.0 262 19-302 39-334 (1416)
343 PRK02888 nitrous-oxide reducta 98.4 0.00018 3.8E-09 65.3 22.4 224 46-290 200-450 (635)
344 PF11768 DUF3312: Protein of u 98.4 9E-05 2E-09 65.5 19.8 115 125-247 206-331 (545)
345 PF03178 CPSF_A: CPSF A subuni 98.4 0.0012 2.6E-08 57.1 25.8 176 60-245 2-202 (321)
346 PF11768 DUF3312: Protein of u 98.3 1.9E-05 4.2E-10 69.6 12.8 116 38-158 205-333 (545)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0029 6.2E-08 58.3 27.3 148 51-202 121-337 (527)
348 KOG3621 WD40 repeat-containing 98.3 2.2E-05 4.8E-10 70.4 13.0 162 79-247 32-199 (726)
349 PF14783 BBS2_Mid: Ciliary BBS 98.3 0.00022 4.7E-09 49.1 14.9 100 41-149 2-109 (111)
350 PF03178 CPSF_A: CPSF A subuni 98.3 0.0014 3E-08 56.6 24.0 213 21-242 2-262 (321)
351 COG3391 Uncharacterized conser 98.2 0.0029 6.4E-08 55.9 27.6 251 38-305 30-287 (381)
352 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0017 3.7E-08 57.8 24.4 196 43-255 33-256 (410)
353 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0019 4.1E-08 56.6 24.4 245 19-283 21-341 (353)
354 PF08553 VID27: VID27 cytoplas 98.2 0.00028 6.1E-09 66.4 19.5 135 58-198 502-647 (794)
355 PF04053 Coatomer_WDAD: Coatom 98.2 0.0029 6.3E-08 56.5 25.0 223 79-361 31-264 (443)
356 PF00780 CNH: CNH domain; Int 98.2 0.0027 5.9E-08 53.6 27.0 224 48-305 5-259 (275)
357 COG0823 TolB Periplasmic compo 98.2 0.00044 9.5E-09 61.4 19.7 174 106-302 175-359 (425)
358 COG0823 TolB Periplasmic compo 98.2 0.00082 1.8E-08 59.7 21.3 199 61-284 174-384 (425)
359 PF04841 Vps16_N: Vps16, N-ter 98.2 0.003 6.6E-08 56.2 25.0 174 105-303 62-248 (410)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0081 1.7E-07 55.4 29.2 193 50-251 69-339 (527)
361 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0009 2E-08 46.2 14.1 102 83-193 2-109 (111)
362 KOG4640 Anaphase-promoting com 98.0 3.7E-05 8E-10 68.2 9.0 93 38-133 20-114 (665)
363 KOG4640 Anaphase-promoting com 98.0 4.9E-05 1.1E-09 67.5 9.4 95 80-177 20-115 (665)
364 COG3391 Uncharacterized conser 98.0 0.01 2.2E-07 52.5 27.6 266 62-361 13-285 (381)
365 COG3386 Gluconolactonase [Carb 98.0 0.0083 1.8E-07 50.8 24.9 225 45-291 31-277 (307)
366 KOG2444 WD40 repeat protein [G 97.9 1.4E-05 3E-10 62.0 4.5 112 137-255 31-142 (238)
367 KOG2444 WD40 repeat protein [G 97.9 1.4E-05 2.9E-10 62.0 4.4 145 182-363 32-181 (238)
368 KOG2395 Protein involved in va 97.9 0.00031 6.8E-09 61.3 12.4 142 52-198 348-500 (644)
369 PF05096 Glu_cyclase_2: Glutam 97.8 0.011 2.4E-07 48.1 21.6 204 71-290 34-250 (264)
370 smart00320 WD40 WD40 repeats. 97.8 7.5E-05 1.6E-09 41.0 5.2 39 70-110 2-40 (40)
371 PF08553 VID27: VID27 cytoplas 97.8 0.0013 2.8E-08 62.1 15.1 142 95-244 494-646 (794)
372 COG3204 Uncharacterized protei 97.7 0.011 2.4E-07 48.3 17.8 163 36-200 82-265 (316)
373 COG3386 Gluconolactonase [Carb 97.7 0.022 4.8E-07 48.3 21.8 203 21-235 47-275 (307)
374 PF05694 SBP56: 56kDa selenium 97.7 0.032 6.9E-07 48.7 21.4 237 49-288 86-392 (461)
375 COG3490 Uncharacterized protei 97.6 0.023 5.1E-07 46.2 19.9 221 30-253 59-318 (366)
376 PF00780 CNH: CNH domain; Int 97.6 0.03 6.5E-07 47.2 25.1 149 95-253 8-173 (275)
377 smart00320 WD40 WD40 repeats. 97.6 0.00029 6.3E-09 38.5 5.9 39 114-152 2-40 (40)
378 KOG2395 Protein involved in va 97.6 0.0054 1.2E-07 54.0 15.5 141 96-245 348-500 (644)
379 PRK13616 lipoprotein LpqB; Pro 97.4 0.062 1.3E-06 50.2 21.4 173 59-244 328-524 (591)
380 PF05096 Glu_cyclase_2: Glutam 97.4 0.051 1.1E-06 44.3 23.0 195 31-233 35-249 (264)
381 PF14583 Pectate_lyase22: Olig 97.4 0.074 1.6E-06 46.0 28.7 267 21-301 60-381 (386)
382 PRK13616 lipoprotein LpqB; Pro 97.4 0.069 1.5E-06 49.9 20.8 185 38-239 349-562 (591)
383 KOG1897 Damage-specific DNA bi 97.3 0.16 3.5E-06 48.7 26.9 309 16-361 600-944 (1096)
384 COG3204 Uncharacterized protei 97.3 0.065 1.4E-06 44.0 20.7 173 76-254 81-271 (316)
385 PRK10115 protease 2; Provision 97.3 0.17 3.6E-06 48.7 34.9 242 39-304 127-397 (686)
386 COG3490 Uncharacterized protei 97.3 0.068 1.5E-06 43.6 20.4 113 70-186 58-179 (366)
387 PF12894 Apc4_WD40: Anaphase-p 97.3 0.00096 2.1E-08 38.4 5.0 34 38-72 11-44 (47)
388 KOG2079 Vacuolar assembly/sort 97.3 0.011 2.3E-07 56.7 14.4 110 41-154 90-203 (1206)
389 KOG3630 Nuclear pore complex, 97.3 0.014 3E-07 56.3 15.1 211 82-300 102-339 (1405)
390 PHA02713 hypothetical protein; 97.2 0.053 1.1E-06 50.7 18.6 185 49-248 303-536 (557)
391 PF15390 DUF4613: Domain of un 97.2 0.066 1.4E-06 48.2 17.6 177 38-223 19-211 (671)
392 COG3823 Glutamine cyclotransfe 97.2 0.072 1.6E-06 41.3 15.5 187 95-289 57-247 (262)
393 PF15390 DUF4613: Domain of un 97.2 0.024 5.1E-07 51.0 14.4 154 124-302 19-187 (671)
394 TIGR03074 PQQ_membr_DH membran 97.1 0.27 5.9E-06 47.4 24.1 238 50-305 194-481 (764)
395 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.17 3.6E-06 44.8 26.7 90 43-133 6-117 (415)
396 PHA02713 hypothetical protein; 97.1 0.062 1.3E-06 50.2 17.7 214 61-305 273-537 (557)
397 KOG4441 Proteins containing BT 97.1 0.11 2.4E-06 48.6 19.0 187 49-249 284-503 (571)
398 PF02897 Peptidase_S9_N: Proly 97.0 0.24 5.2E-06 44.6 27.0 199 82-301 125-357 (414)
399 KOG4499 Ca2+-binding protein R 97.0 0.069 1.5E-06 42.2 14.0 171 13-186 73-272 (310)
400 KOG2079 Vacuolar assembly/sort 96.9 0.0065 1.4E-07 58.0 9.5 92 17-112 105-203 (1206)
401 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0045 9.7E-08 35.6 5.0 34 80-116 11-44 (47)
402 KOG4499 Ca2+-binding protein R 96.8 0.18 3.9E-06 40.0 20.4 222 51-291 28-275 (310)
403 KOG1897 Damage-specific DNA bi 96.8 0.57 1.2E-05 45.2 29.8 220 17-246 378-614 (1096)
404 KOG4441 Proteins containing BT 96.7 0.3 6.6E-06 45.7 18.6 213 21-247 301-548 (571)
405 KOG3630 Nuclear pore complex, 96.5 0.047 1E-06 52.9 11.6 149 124-288 100-260 (1405)
406 PHA03098 kelch-like protein; P 96.4 0.32 6.9E-06 45.6 17.0 185 48-247 293-513 (534)
407 KOG2280 Vacuolar assembly/sort 96.4 0.69 1.5E-05 43.3 17.8 184 59-254 63-255 (829)
408 KOG2280 Vacuolar assembly/sort 96.3 0.58 1.3E-05 43.8 17.1 178 103-305 63-250 (829)
409 PF14870 PSII_BNR: Photosynthe 96.2 0.69 1.5E-05 39.2 21.4 156 78-242 142-301 (302)
410 PF12234 Rav1p_C: RAVE protein 96.1 0.6 1.3E-05 43.6 16.5 111 41-153 32-155 (631)
411 PF12234 Rav1p_C: RAVE protein 96.1 0.63 1.4E-05 43.5 16.6 123 119-245 24-156 (631)
412 PF14870 PSII_BNR: Photosynthe 96.1 0.75 1.6E-05 39.0 25.7 233 40-298 63-301 (302)
413 PF14781 BBS2_N: Ciliary BBSom 96.1 0.34 7.3E-06 34.9 13.0 117 43-162 3-133 (136)
414 PF10168 Nup88: Nuclear pore c 96.0 1.3 2.7E-05 42.7 18.7 76 38-114 84-181 (717)
415 PF10168 Nup88: Nuclear pore c 96.0 1.6 3.5E-05 42.0 23.3 73 81-156 85-181 (717)
416 PF14727 PHTB1_N: PTHB1 N-term 95.9 1.2 2.5E-05 39.8 23.8 143 95-245 38-204 (418)
417 PF10647 Gmad1: Lipoprotein Lp 95.9 0.81 1.8E-05 38.0 18.2 164 169-360 25-198 (253)
418 PF05694 SBP56: 56kDa selenium 95.9 1.1 2.5E-05 39.5 20.5 182 17-200 94-344 (461)
419 PHA02790 Kelch-like protein; P 95.8 1.1 2.5E-05 41.2 17.3 182 49-246 271-471 (480)
420 TIGR03118 PEPCTERM_chp_1 conse 95.8 0.93 2E-05 37.8 23.3 239 41-292 25-325 (336)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 95.7 0.27 5.8E-06 43.6 12.1 86 38-123 307-409 (415)
422 KOG2247 WD40 repeat-containing 95.7 0.0012 2.6E-08 57.3 -2.1 149 42-197 38-187 (615)
423 TIGR03074 PQQ_membr_DH membran 95.6 2.4 5.1E-05 41.3 23.3 208 136-361 194-479 (764)
424 PF08728 CRT10: CRT10; InterP 95.6 1.8 3.8E-05 41.2 17.5 144 50-197 49-245 (717)
425 PF14727 PHTB1_N: PTHB1 N-term 95.6 1.6 3.4E-05 39.0 28.6 145 49-198 36-204 (418)
426 COG3292 Predicted periplasmic 95.5 1.7 3.6E-05 39.6 16.0 274 38-354 164-442 (671)
427 COG5167 VID27 Protein involved 95.5 0.46 9.9E-06 42.4 12.3 144 49-198 478-632 (776)
428 PF10313 DUF2415: Uncharacteri 95.4 0.083 1.8E-06 29.5 5.0 32 168-199 1-34 (43)
429 PHA03098 kelch-like protein; P 95.3 2 4.4E-05 40.2 17.5 145 95-248 296-467 (534)
430 KOG2247 WD40 repeat-containing 95.3 0.002 4.4E-08 56.0 -2.2 143 128-293 38-180 (615)
431 PF10313 DUF2415: Uncharacteri 95.2 0.08 1.7E-06 29.5 4.7 31 39-69 1-34 (43)
432 PRK13684 Ycf48-like protein; P 95.1 2.1 4.5E-05 37.3 17.2 152 38-198 172-331 (334)
433 PF14761 HPS3_N: Hermansky-Pud 95.0 1.4 3.1E-05 34.8 15.3 102 51-156 29-165 (215)
434 KOG2377 Uncharacterized conser 94.9 2.5 5.3E-05 37.4 15.2 158 126-300 24-184 (657)
435 PF07995 GSDH: Glucose / Sorbo 94.6 2.8 6E-05 36.5 23.6 103 82-189 3-134 (331)
436 COG1520 FOG: WD40-like repeat 94.6 3 6.6E-05 36.9 23.8 198 49-255 68-278 (370)
437 KOG1900 Nuclear pore complex, 94.4 3.6 7.7E-05 41.5 16.4 151 44-199 84-273 (1311)
438 KOG1916 Nuclear protein, conta 94.4 0.12 2.7E-06 48.9 6.5 137 20-159 152-328 (1283)
439 KOG1916 Nuclear protein, conta 94.2 0.035 7.5E-07 52.4 2.7 154 189-361 110-267 (1283)
440 PF07569 Hira: TUP1-like enhan 94.1 0.62 1.3E-05 37.6 9.4 70 125-198 13-95 (219)
441 PRK10115 protease 2; Provision 94.1 6.2 0.00013 38.3 22.8 115 125-244 127-254 (686)
442 KOG2377 Uncharacterized conser 93.9 0.89 1.9E-05 40.0 10.2 115 38-156 66-187 (657)
443 TIGR02604 Piru_Ver_Nterm putat 93.9 3.9 8.4E-05 36.2 14.8 112 168-290 14-143 (367)
444 KOG1983 Tomosyn and related SN 93.9 5.4 0.00012 40.3 16.9 230 38-305 35-268 (993)
445 PF14781 BBS2_N: Ciliary BBSom 93.8 1.9 4E-05 31.3 12.7 107 87-199 5-126 (136)
446 TIGR02604 Piru_Ver_Nterm putat 93.7 4.7 0.0001 35.7 16.2 142 39-187 14-202 (367)
447 PLN00033 photosystem II stabil 93.7 4.9 0.00011 35.8 18.4 145 41-195 241-396 (398)
448 PF10647 Gmad1: Lipoprotein Lp 93.7 3.6 7.7E-05 34.2 17.9 151 82-237 25-187 (253)
449 PF07995 GSDH: Glucose / Sorbo 93.7 4.4 9.6E-05 35.2 28.3 241 40-296 3-330 (331)
450 PHA02790 Kelch-like protein; P 93.3 6.7 0.00015 36.2 16.4 100 95-200 273-386 (480)
451 PF14761 HPS3_N: Hermansky-Pud 93.2 3.5 7.6E-05 32.7 11.8 106 137-247 29-165 (215)
452 KOG3616 Selective LIM binding 93.1 2.4 5.2E-05 40.0 12.1 68 38-110 14-81 (1636)
453 PF02333 Phytase: Phytase; In 93.1 5.7 0.00012 34.9 24.9 201 47-254 65-300 (381)
454 PF07569 Hira: TUP1-like enhan 93.0 0.91 2E-05 36.6 8.6 69 46-117 18-100 (219)
455 PF12768 Rax2: Cortical protei 92.9 4.6 0.0001 34.0 12.8 114 60-177 16-146 (281)
456 COG3823 Glutamine cyclotransfe 92.8 3.9 8.4E-05 32.2 13.5 107 49-159 55-163 (262)
457 COG5167 VID27 Protein involved 92.8 7.3 0.00016 35.2 16.5 140 96-245 482-632 (776)
458 PF11635 Med16: Mediator compl 92.3 12 0.00026 36.8 20.6 199 95-296 63-345 (753)
459 KOG1900 Nuclear pore complex, 92.2 3.8 8.3E-05 41.3 12.8 174 64-246 64-273 (1311)
460 KOG4460 Nuclear pore complex, 92.1 5.5 0.00012 36.1 12.5 28 126-153 105-132 (741)
461 COG5276 Uncharacterized conser 91.4 7.5 0.00016 32.5 29.3 191 38-247 86-287 (370)
462 TIGR02276 beta_rpt_yvtn 40-res 91.4 1.3 2.9E-05 24.4 5.8 30 134-163 1-31 (42)
463 PF11715 Nup160: Nucleoporin N 91.4 1.6 3.4E-05 41.1 9.5 73 48-122 156-258 (547)
464 PF12657 TFIIIC_delta: Transcr 91.3 1.5 3.2E-05 34.0 7.7 31 125-155 86-122 (173)
465 PRK13684 Ycf48-like protein; P 91.1 9.8 0.00021 33.2 19.3 153 80-243 172-329 (334)
466 smart00036 CNH Domain found in 90.9 9.6 0.00021 32.7 25.5 59 49-112 12-73 (302)
467 PF10395 Utp8: Utp8 family; I 90.4 17 0.00036 34.6 16.5 157 38-198 129-305 (670)
468 TIGR03118 PEPCTERM_chp_1 conse 90.1 10 0.00023 31.9 22.1 207 82-305 24-283 (336)
469 PF02333 Phytase: Phytase; In 90.0 13 0.00028 32.8 21.5 193 95-302 69-291 (381)
470 PF08728 CRT10: CRT10; InterP 89.7 8.3 0.00018 36.9 12.2 115 126-244 102-245 (717)
471 PF13449 Phytase-like: Esteras 89.5 13 0.00029 32.2 15.1 118 168-288 20-165 (326)
472 COG1520 FOG: WD40-like repeat 89.5 15 0.00032 32.6 27.3 148 96-254 70-226 (370)
473 PF12657 TFIIIC_delta: Transcr 89.3 3.1 6.7E-05 32.2 8.0 31 168-198 86-121 (173)
474 KOG3616 Selective LIM binding 89.2 5.2 0.00011 37.9 10.2 112 79-198 13-126 (1636)
475 PF10214 Rrn6: RNA polymerase 89.1 25 0.00054 34.8 23.9 164 124-302 79-277 (765)
476 KOG1898 Splicing factor 3b, su 88.3 29 0.00063 34.7 18.2 173 61-244 854-1047(1205)
477 KOG1983 Tomosyn and related SN 88.1 19 0.0004 36.7 14.1 107 82-198 37-144 (993)
478 COG5290 IkappaB kinase complex 86.9 2.4 5.3E-05 40.2 6.8 100 83-187 249-356 (1243)
479 PF11715 Nup160: Nucleoporin N 86.9 5 0.00011 37.8 9.3 75 181-255 159-258 (547)
480 PF10395 Utp8: Utp8 family; I 86.8 30 0.00064 33.0 24.0 246 43-304 32-308 (670)
481 PF13570 PQQ_3: PQQ-like domai 86.3 3.4 7.5E-05 22.6 4.9 21 135-155 20-40 (40)
482 KOG1896 mRNA cleavage and poly 85.9 43 0.00094 34.1 27.8 181 105-304 1005-1216(1366)
483 TIGR02276 beta_rpt_yvtn 40-res 85.2 4.5 9.8E-05 22.1 6.0 36 96-132 6-41 (42)
484 COG4590 ABC-type uncharacteriz 85.1 5.5 0.00012 35.4 7.7 156 38-200 220-388 (733)
485 PF07250 Glyoxal_oxid_N: Glyox 84.7 21 0.00045 29.4 10.9 147 106-256 48-208 (243)
486 TIGR03606 non_repeat_PQQ dehyd 84.6 32 0.00068 31.4 13.3 61 215-281 30-90 (454)
487 smart00564 PQQ beta-propeller 84.4 2.8 6E-05 21.6 3.8 27 136-162 6-32 (33)
488 PF01731 Arylesterase: Arylest 84.4 6.4 0.00014 26.2 6.2 50 19-68 34-84 (86)
489 PF12768 Rax2: Cortical protei 84.1 25 0.00053 29.7 13.1 92 20-112 15-123 (281)
490 smart00564 PQQ beta-propeller 84.0 2.9 6.2E-05 21.5 3.8 25 52-76 8-32 (33)
491 PF10214 Rrn6: RNA polymerase 83.8 48 0.001 32.9 22.8 158 38-199 79-277 (765)
492 PF12341 DUF3639: Protein of u 83.8 3.9 8.4E-05 20.3 3.7 26 39-66 2-27 (27)
493 PF01011 PQQ: PQQ enzyme repea 82.9 4.6 0.0001 21.8 4.4 28 96-123 2-29 (38)
494 PF01011 PQQ: PQQ enzyme repea 82.8 4.1 9E-05 22.0 4.1 26 138-163 2-27 (38)
495 KOG3522 Predicted guanine nucl 82.4 8.7 0.00019 37.0 8.3 141 9-157 545-700 (925)
496 KOG1898 Splicing factor 3b, su 81.9 61 0.0013 32.6 18.1 175 105-301 854-1048(1205)
497 PF07676 PD40: WD40-like Beta 81.3 6.6 0.00014 21.2 5.0 30 166-195 7-38 (39)
498 PRK14131 N-acetylneuraminic ac 81.1 40 0.00086 30.0 18.8 11 147-157 107-117 (376)
499 COG4590 ABC-type uncharacteriz 80.9 42 0.00091 30.2 14.1 162 125-305 221-390 (733)
500 PF13449 Phytase-like: Esteras 80.4 38 0.00083 29.4 16.7 143 38-184 19-230 (326)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-56 Score=356.42 Aligned_cols=310 Identities=19% Similarity=0.312 Sum_probs=281.3
Q ss_pred CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee-eeecCCCCcEEEEE
Q 016457 12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS-GECKGHSSTVNQIS 87 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~v~~i~ 87 (389)
...++++.|.++|+||+. .+..+.++ ...|.|++|+|||+.||+|+.||+|++||.++|+++ ..+.+|...|++++
T Consensus 128 ~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~La 207 (480)
T KOG0271|consen 128 SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALA 207 (480)
T ss_pred ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEe
Confidence 367899999999999986 57777888 999999999999999999999999999999998654 67899999999999
Q ss_pred EeCCC---CCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457 88 FSGPS---TPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE 164 (389)
Q Consensus 88 ~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 164 (389)
|.|-. ...+|++++.||.|+|||+..+.++..+.+|..+|+|+.|- ..+.+++++.|++|++|+...|.....++
T Consensus 208 wep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG-G~gliySgS~DrtIkvw~a~dG~~~r~lk- 285 (480)
T KOG0271|consen 208 WEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG-GEGLIYSGSQDRTIKVWRALDGKLCRELK- 285 (480)
T ss_pred ecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc-CCceEEecCCCceEEEEEccchhHHHhhc-
Confidence 98732 11589999999999999999999999999999999999997 56788888889999999999999999999
Q ss_pred cccCCeeEEEEe-----------cCCC------------------------CeEEEEeCCCcEEEEecCCCCCCCcccee
Q 016457 165 SHVEDVTQVHFV-----------PNNQ------------------------NKVVSASVDGLICTFDTGGDINDDDLLES 209 (389)
Q Consensus 165 ~~~~~v~~~~~~-----------~~~~------------------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 209 (389)
+|...|+.|+.+ |.+. ..+++|+.|.++.+|+.. ...+++..
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~---~~kkpi~r 362 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF---KSKKPITR 362 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc---ccccchhh
Confidence 999999999877 2222 259999999999999987 34567888
Q ss_pred eeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe
Q 016457 210 VINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG 289 (389)
Q Consensus 210 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g 289 (389)
+.+|+.-|+.+.|+ |++.++++++.|++|++||.++|+.+.+|.+ |...|..++|+.|.+ +|++|
T Consensus 363 mtgHq~lVn~V~fS-Pd~r~IASaSFDkSVkLW~g~tGk~lasfRG------------Hv~~VYqvawsaDsR--LlVS~ 427 (480)
T KOG0271|consen 363 MTGHQALVNHVSFS-PDGRYIASASFDKSVKLWDGRTGKFLASFRG------------HVAAVYQVAWSADSR--LLVSG 427 (480)
T ss_pred hhchhhheeeEEEC-CCccEEEEeecccceeeeeCCCcchhhhhhh------------ccceeEEEEeccCcc--EEEEc
Confidence 99999999999999 8999999999999999999999999999998 779999999999998 89999
Q ss_pred cCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEe
Q 016457 290 TGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWL 357 (389)
Q Consensus 290 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~ 357 (389)
+.|.++++|++.+.++ ...++ ||.++|.++ .|+|||+.+++|+.|..+++|.
T Consensus 428 SkDsTLKvw~V~tkKl------~~DLp-Gh~DEVf~v---------DwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 428 SKDSTLKVWDVRTKKL------KQDLP-GHADEVFAV---------DWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEEEeeeeee------cccCC-CCCceEEEE---------EecCCCceeecCCCceEEEeec
Confidence 9999999999999887 55665 999999999 9999999999999999999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.3e-53 Score=335.80 Aligned_cols=292 Identities=18% Similarity=0.238 Sum_probs=262.4
Q ss_pred eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457 31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109 (389)
Q Consensus 31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 109 (389)
+...+.| .++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+||+ +.||+|+.||+|++|
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg--k~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG--KKIASGSKDGSIRLW 184 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc--chhhccccCCeEEEe
Confidence 4445667 8999999999999999999999999999999999999999999999999999999 799999999999999
Q ss_pred EccCCeEE-EEEEcCCCCeEEEEEeC-----CCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeE
Q 016457 110 DTRSFHEV-WSVTAGSQEIFCFSFGG-----STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV 183 (389)
Q Consensus 110 d~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 183 (389)
|..+++++ ..+.+|...|++++|.| ...++++++.||.|+|||+..+.++..+. +|..+|+|+.|-.+| +|
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~g--li 261 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEG--LI 261 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCc--eE
Confidence 99988765 67999999999999976 45678888889999999999999999999 999999999998775 99
Q ss_pred EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEec-----------------------------------CCCc
Q 016457 184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFG-----------------------------------ETNK 228 (389)
Q Consensus 184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------------------------------~~~~ 228 (389)
++|+.|++|++|+...+ ...+.+.+|...|+.++.+. ..++
T Consensus 262 ySgS~DrtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDG----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred EecCCCceEEEEEccch----hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 99999999999999844 57788889999999888761 1234
Q ss_pred EEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc
Q 016457 229 HLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT 307 (389)
Q Consensus 229 ~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~ 307 (389)
.|++|+.|.++.+|+.... +++....+ |..-|+.+.|+||+. ||++++.|..|++|+..+++.
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtg------------Hq~lVn~V~fSPd~r--~IASaSFDkSVkLW~g~tGk~-- 401 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTG------------HQALVNHVSFSPDGR--YIASASFDKSVKLWDGRTGKF-- 401 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhc------------hhhheeeEEECCCcc--EEEEeecccceeeeeCCCcch--
Confidence 6999999999999997544 46666665 779999999999999 999999999999999999987
Q ss_pred cCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 308 IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 308 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
+..+. ||-.+|..+ +||.|.++|+||+.|.++++|++...
T Consensus 402 ----lasfR-GHv~~VYqv---------awsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 402 ----LASFR-GHVAAVYQV---------AWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred ----hhhhh-hccceeEEE---------EeccCccEEEEcCCCceEEEEEeeee
Confidence 77775 999999999 99999999999999999999999865
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-52 Score=338.54 Aligned_cols=284 Identities=18% Similarity=0.219 Sum_probs=266.2
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
..+|..+.|+.|++.|++|+.+|.+++|+..+...+.++.+|...|.++.|+|..+...++||+.||++++|++.+..++
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l 254 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL 254 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence 78899999999999999999999999999999999999999999999999999843369999999999999999999999
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (389)
..+.+|...|..++|+|+|.+|.+++.|.+-++||++++..+.... +|...|.+++|+|+|. ++++|+.|..-+|||+
T Consensus 255 ~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDL 332 (459)
T ss_pred hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEecCCCc-eeeccCccchhheeec
Confidence 9999999999999999999999999999999999999998888777 9999999999999996 9999999999999999
Q ss_pred CCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecc
Q 016457 198 GGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHY 277 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 277 (389)
|++ ..+..+.+|..+|.+|+|+ |+|..|++|+.|++++|||++..+.+.++.. |..-|+.++|
T Consensus 333 Rtg----r~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA------------H~nlVS~Vk~ 395 (459)
T KOG0272|consen 333 RTG----RCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPA------------HSNLVSQVKY 395 (459)
T ss_pred ccC----cEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceeccc------------ccchhhheEe
Confidence 976 5678888999999999999 8899999999999999999999999888887 7799999999
Q ss_pred cCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEe
Q 016457 278 PGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWL 357 (389)
Q Consensus 278 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~ 357 (389)
+|+... +|++++.|++++||.-.+.+. +..+. ||++.|.++ .+++|+++++|++.|.++++|.
T Consensus 396 ~p~~g~-fL~TasyD~t~kiWs~~~~~~------~ksLa-GHe~kV~s~---------Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 396 SPQEGY-FLVTASYDNTVKIWSTRTWSP------LKSLA-GHEGKVISL---------DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCCe-EEEEcccCcceeeecCCCccc------chhhc-CCccceEEE---------EeccCCceEEEeccCceeeecc
Confidence 994332 899999999999999998766 77776 999999999 9999999999999999999996
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-47 Score=295.76 Aligned_cols=289 Identities=16% Similarity=0.213 Sum_probs=265.9
Q ss_pred eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457 32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110 (389)
Q Consensus 32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 110 (389)
.++++| ...|.++.|++|.++|++++.||.+.|||.-+...++.+.-....|..++|+|.+ +++|+|+.|+...||+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg--~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG--NFVACGGLDNKCSIYP 125 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC--CeEEecCcCceeEEEe
Confidence 377888 8999999999999999999999999999999988888888888999999999999 7999999999999999
Q ss_pred ccCC------eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457 111 TRSF------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 111 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 184 (389)
+.+. ...+.+.+|.+.+.|+.|. ++.+|++++.|.++.+||+++++.+..+. +|.+.|.++.+.|...+.++
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~-dD~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFL-DDNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEc-CCCceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEE
Confidence 9865 4556789999999999998 58899999999999999999999999999 99999999999995447999
Q ss_pred EEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457 185 SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW 264 (389)
Q Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 264 (389)
+|+-|+..++||+|.+ .....+.+|++.|+++.|+ |+|.-+++|+.|++.++||++..+.+..|....
T Consensus 204 Sg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~------- 271 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCRLYDLRADQELAVYSHDS------- 271 (343)
T ss_pred ecccccceeeeeccCc----ceeEeecccccccceEEEc-cCCCeeeecCCCceeEEEeecCCcEEeeeccCc-------
Confidence 9999999999999944 7889999999999999999 788999999999999999999999998888544
Q ss_pred cCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeE
Q 016457 265 TLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG 344 (389)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l 344 (389)
...+|++++|+..|+ +|++|..|.++.+||.-.++. +..+. ||+..|.++ ..+|||.-+
T Consensus 272 ---~~~gitSv~FS~SGR--lLfagy~d~~c~vWDtlk~e~------vg~L~-GHeNRvScl---------~~s~DG~av 330 (343)
T KOG0286|consen 272 ---IICGITSVAFSKSGR--LLFAGYDDFTCNVWDTLKGER------VGVLA-GHENRVSCL---------GVSPDGMAV 330 (343)
T ss_pred ---ccCCceeEEEccccc--EEEeeecCCceeEeeccccce------EEEee-ccCCeeEEE---------EECCCCcEE
Confidence 447899999999999 899999999999999988776 56666 999999999 999999999
Q ss_pred EEecCCCeEEEEe
Q 016457 345 WTGGEDGRLCCWL 357 (389)
Q Consensus 345 ~s~~~dg~v~iW~ 357 (389)
+||+.|..||||.
T Consensus 331 ~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 331 ATGSWDSTLRIWA 343 (343)
T ss_pred EecchhHheeecC
Confidence 9999999999994
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.8e-48 Score=313.59 Aligned_cols=268 Identities=18% Similarity=0.229 Sum_probs=252.0
Q ss_pred CCCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCC--CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEE
Q 016457 10 SQPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKND--WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVN 84 (389)
Q Consensus 10 ~~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~ 84 (389)
+....+|++-+|.+++|+.. +.+.++.+ .+.|.++.|+|. +..+|+|+.||++++|++++..++..+.+|...|.
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs 265 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS 265 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe
Confidence 34467899999999999987 46778888 999999999997 56899999999999999998899999999999999
Q ss_pred EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457 85 QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE 164 (389)
Q Consensus 85 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 164 (389)
.++|+|+| ++|+|++.|.+-++||++++..+...++|...|.+++|+|+|..+++||.|..-+|||+|++.++..+.
T Consensus 266 ~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~- 342 (459)
T KOG0272|consen 266 RVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA- 342 (459)
T ss_pred eeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-
Confidence 99999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457 165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW 244 (389)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 244 (389)
+|..+|.+|+|+|+| +.|+||+.|++++|||++.. ..+..+.+|..-|..|.|.|..|.+|++++.|++++||..
T Consensus 343 gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r----~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 343 GHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR----SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred ccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc----ccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 899999999999999 59999999999999999943 4588888999999999999778999999999999999999
Q ss_pred CCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
.+..+++++.+ |++.|.++.++++++ ++++++.|.++++|.
T Consensus 418 ~~~~~~ksLaG------------He~kV~s~Dis~d~~--~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RTWSPLKSLAG------------HEGKVISLDISPDSQ--AIATSSFDRTIKLWR 458 (459)
T ss_pred CCcccchhhcC------------CccceEEEEeccCCc--eEEEeccCceeeecc
Confidence 99999999998 889999999999999 999999999999995
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6e-45 Score=274.97 Aligned_cols=288 Identities=16% Similarity=0.207 Sum_probs=253.5
Q ss_pred CCccccCCCCeEEEEec--Cceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce--eeeeecCCCCcEEEE
Q 016457 12 PKSQSCDNVNSIKRFGL--KNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--YSGECKGHSSTVNQI 86 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i 86 (389)
...++++.|.+||+|.. +.+.+++++ ++.|+.+...|+++.||+++ .-.|++||+.+++ ++.++.+|++.|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 37889999999999997 468999999 99999999999999999998 5679999998874 688999999999999
Q ss_pred EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457 87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH 166 (389)
Q Consensus 87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (389)
.|..++ +.+++|++||+++|||++...+.+.++. .++|+++..+|+...|+++..+|.|++||+++......+....
T Consensus 90 gF~~dg--rWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 90 GFQCDG--RWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEeecC--eEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 999999 7999999999999999999777766664 6999999999999999999999999999999887776666455
Q ss_pred cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC--CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457 167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI--NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW 244 (389)
Q Consensus 167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 244 (389)
..+|.++...|+|. +++.+...|.+++|++-+.. .+..++.++..|...+..+.++ |++++|++++.|.+++||+.
T Consensus 167 ~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS-Pd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS-PDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC-CCCcEEEeecCCceEEEEec
Confidence 67899999999996 99999999999999998643 2355677788999999999999 88999999999999999999
Q ss_pred CCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceee
Q 016457 245 KDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVV 323 (389)
Q Consensus 245 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v 323 (389)
.+. +....+.+ |...+++++||.||+ ||++|+.|+.+++|++..++. +.... +|-...
T Consensus 245 ~~~~kle~~l~g------------h~rWvWdc~FS~dg~--YlvTassd~~~rlW~~~~~k~------v~qy~-gh~K~~ 303 (311)
T KOG0315|consen 245 DDFFKLELVLTG------------HQRWVWDCAFSADGE--YLVTASSDHTARLWDLSAGKE------VRQYQ-GHHKAA 303 (311)
T ss_pred CCceeeEEEeec------------CCceEEeeeeccCcc--EEEecCCCCceeecccccCce------eeecC-Cccccc
Confidence 987 55556665 668999999999999 999999999999999999886 45554 777665
Q ss_pred eec
Q 016457 324 RSV 326 (389)
Q Consensus 324 ~~~ 326 (389)
.++
T Consensus 304 vc~ 306 (311)
T KOG0315|consen 304 VCV 306 (311)
T ss_pred EEE
Confidence 555
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-44 Score=276.24 Aligned_cols=296 Identities=19% Similarity=0.246 Sum_probs=246.4
Q ss_pred eeeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCC-----CceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457 33 QTNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPV-----TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105 (389)
Q Consensus 33 ~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~ 105 (389)
.++.+ ++.|..++..+.+ ..+++++.|.++.+|++. .|.+++.+.||...|..+..++++ ++.++++.|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--~~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--NFALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC--ceEEeccccce
Confidence 45666 8999999998874 688999999999999874 467889999999999999999999 79999999999
Q ss_pred EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecC--CCCeE
Q 016457 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN--NQNKV 183 (389)
Q Consensus 106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l 183 (389)
+++||+.+++..+.|.+|...|.+++|++++.++++++.|.+|++|++............+...|+|+.|+|+ .+ .|
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p-~I 165 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP-II 165 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc-EE
Confidence 9999999999999999999999999999999999999999999999987554443333234789999999999 55 99
Q ss_pred EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC
Q 016457 184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS 263 (389)
Q Consensus 184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 263 (389)
++++.|++|++||+++ .+....+.+|...++.++++ |+|.++++|+.||.+.+||++.++.+..+.
T Consensus 166 vs~s~DktvKvWnl~~----~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~k~lysl~--------- 231 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRN----CQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEGKNLYSLE--------- 231 (315)
T ss_pred EEccCCceEEEEccCC----cchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCCceeEecc---------
Confidence 9999999999999994 35566778899999999999 899999999999999999999999988876
Q ss_pred ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeec-cCCCcccCCCCCCCce
Q 016457 264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV-LPMPSVQGRPAQSHGI 342 (389)
Q Consensus 264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~s~~~~ 342 (389)
|...|.+++|+|+.- +|+.+ .+..|+|||++++.. +..+...-.++ +. ......+.++|++||+
T Consensus 232 ----a~~~v~sl~fspnry--wL~~a-t~~sIkIwdl~~~~~------v~~l~~d~~g~--s~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 232 ----AFDIVNSLCFSPNRY--WLCAA-TATSIKIWDLESKAV------VEELKLDGIGP--SSKAGDPICLSLAWSADGQ 296 (315)
T ss_pred ----CCCeEeeEEecCCce--eEeec-cCCceEEEeccchhh------hhhcccccccc--ccccCCcEEEEEEEcCCCc
Confidence 668999999999754 55555 455699999999876 33332111111 11 1122223449999999
Q ss_pred eEEEecCCCeEEEEeccC
Q 016457 343 FGWTGGEDGRLCCWLSDD 360 (389)
Q Consensus 343 ~l~s~~~dg~v~iW~~~~ 360 (389)
.|++|-.|+.|++|.+..
T Consensus 297 tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEEeeecCCcEEEEEeec
Confidence 999999999999998753
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.4e-44 Score=270.27 Aligned_cols=272 Identities=17% Similarity=0.262 Sum_probs=236.6
Q ss_pred CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe--EEEEEEcCCCCeE
Q 016457 51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH--EVWSVTAGSQEIF 128 (389)
Q Consensus 51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~ 128 (389)
-+|++++.|.+|++|...+|.+..+++...+.|+.+...|++ ..|++++.- .||+||++++. ++.+|.+|...|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk--~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDK--KDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCc--chhhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence 489999999999999999999999999778899999999999 688887754 69999999764 6899999999999
Q ss_pred EEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccce
Q 016457 129 CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLE 208 (389)
Q Consensus 129 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 208 (389)
++.|..++..+++++.||+++|||+|...+.+.+. |..+|+++..+|+.. .|++|..+|.|++||+.... ...
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~----c~~ 160 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENS----CTH 160 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCc----ccc
Confidence 99999999999999999999999999977777775 889999999999985 99999999999999999542 222
Q ss_pred ee-eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce------eEEeecccccccCCccCCCCCceeeecccCCC
Q 016457 209 SV-INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN------VASFENARSLASDSWTLDDVDYFVDCHYPGEG 281 (389)
Q Consensus 209 ~~-~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 281 (389)
.+ .....+|.++... +++.+++.+...|..++|++-+... +..|+. |...+..+.+||++
T Consensus 161 ~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a------------h~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 161 ELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA------------HNGHILRCLLSPDV 227 (311)
T ss_pred ccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheec------------ccceEEEEEECCCC
Confidence 22 2344688999998 8899999999999999999876533 333443 78999999999999
Q ss_pred CeEEEEEecCCceEEEEEeccC-CccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457 282 ENLWVIGGTGAGTVGYFPVNYG-GAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD 360 (389)
Q Consensus 282 ~~~~l~~g~~dg~i~i~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~ 360 (389)
+ ||++++.|.+++||+.++. +. ...+. +|...+.+. +||.||+||+||+.|+.+++|++..
T Consensus 228 k--~lat~ssdktv~iwn~~~~~kl------e~~l~-gh~rWvWdc---------~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 228 K--YLATCSSDKTVKIWNTDDFFKL------ELVLT-GHQRWVWDC---------AFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred c--EEEeecCCceEEEEecCCceee------EEEee-cCCceEEee---------eeccCccEEEecCCCCceeeccccc
Confidence 9 9999999999999999987 32 34454 999999999 9999999999999999999999987
Q ss_pred Ccc
Q 016457 361 SSE 363 (389)
Q Consensus 361 ~~~ 363 (389)
..+
T Consensus 290 ~k~ 292 (311)
T KOG0315|consen 290 GKE 292 (311)
T ss_pred Cce
Confidence 753
No 9
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-43 Score=274.41 Aligned_cols=292 Identities=18% Similarity=0.225 Sum_probs=257.1
Q ss_pred ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCC-CceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457 30 NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV-TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIR 107 (389)
Q Consensus 30 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~ 107 (389)
.++..+.+ .+.|+.+.|+|+|.+||+|+.|..|.+|++. .-+-...+++|.+.|..+.|.+++ ..|++++.|.+|+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~--s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG--SHILSCGTDKTVR 115 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC--CEEEEecCCceEE
Confidence 35556667 9999999999999999999999999999964 345667888999999999999999 7999999999999
Q ss_pred EEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457 108 AWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA 186 (389)
Q Consensus 108 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 186 (389)
.||+++|+.++.+++|..-|+++.-+.-+..|+++++ |+++++||+|+...++++. .+.+++++.|...+. .+.+|
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~-qv~sg 192 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSD-QVISG 192 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEeccccc-ceeec
Confidence 9999999999999999999999997766777777666 8999999999999999886 677899999999995 99999
Q ss_pred eCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC----ceeEEeecccccccC
Q 016457 187 SVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG----QNVASFENARSLASD 262 (389)
Q Consensus 187 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~ 262 (389)
+-|+.|++||++. ......+.+|..+|+.+..+ +++.++++-+.|.++++||++.. +++..+.++...
T Consensus 193 gIdn~ikvWd~r~----~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn--- 264 (338)
T KOG0265|consen 193 GIDNDIKVWDLRK----NDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN--- 264 (338)
T ss_pred cccCceeeecccc----CcceEEeecccCceeeEEec-cCCCccccccccceEEEEEecccCCCCceEEEeecchhh---
Confidence 9999999999984 35678888999999999999 78899999999999999999753 457777764311
Q ss_pred CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce
Q 016457 263 SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI 342 (389)
Q Consensus 263 ~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~ 342 (389)
.+.....++|+|++. ++.+|+.|..+++||...... +..++ ||.+.|.++ .|+|...
T Consensus 265 -----feknlL~cswsp~~~--~i~ags~dr~vyvwd~~~r~~------lyklp-Gh~gsvn~~---------~Fhp~e~ 321 (338)
T KOG0265|consen 265 -----FEKNLLKCSWSPNGT--KITAGSADRFVYVWDTTSRRI------LYKLP-GHYGSVNEV---------DFHPTEP 321 (338)
T ss_pred -----hhhhcceeeccCCCC--ccccccccceEEEeecccccE------EEEcC-CcceeEEEe---------eecCCCc
Confidence 235677899999999 889999999999999998776 67776 999999999 9999999
Q ss_pred eEEEecCCCeEEEEe
Q 016457 343 FGWTGGEDGRLCCWL 357 (389)
Q Consensus 343 ~l~s~~~dg~v~iW~ 357 (389)
+|.+++.|.+|++=.
T Consensus 322 iils~~sdk~i~lge 336 (338)
T KOG0265|consen 322 IILSCSSDKTIYLGE 336 (338)
T ss_pred EEEEeccCceeEeec
Confidence 999999999998743
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.9e-45 Score=294.93 Aligned_cols=286 Identities=17% Similarity=0.243 Sum_probs=258.8
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
.-.|..+.|.|+|+.|++|+..|.+.+|+...-.....++.|..+|.++.|++++ ..++||+.+|.|++|+.. ...+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g--~wmiSgD~gG~iKyWqpn-mnnV 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG--TWMISGDKGGMIKYWQPN-MNNV 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC--CEEEEcCCCceEEecccc-hhhh
Confidence 6789999999999999999999999999986666666778999999999999999 799999999999999976 4455
Q ss_pred EEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457 118 WSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196 (389)
Q Consensus 118 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 196 (389)
+.++.| ...|++++|+|++..+++++.||+|+|||....+.-..+. +|.-.|.+++|+|... ++++|+.|..|++||
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kg-LiasgskDnlVKlWD 250 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKG-LIASGSKDNLVKLWD 250 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccc-eeEEccCCceeEeec
Confidence 556666 4899999999999999999999999999999988888888 9999999999999986 999999999999999
Q ss_pred cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457 197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH 276 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (389)
.+++ .++..+..|...|..+.|. +++++|++++.|..+++||+++.+.+..+.+ |...++++.
T Consensus 251 prSg----~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~------------Hkkdv~~~~ 313 (464)
T KOG0284|consen 251 PRSG----SCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELFTYRG------------HKKDVTSLT 313 (464)
T ss_pred CCCc----chhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHHHhhc------------chhhheeec
Confidence 9966 6788889999999999999 6779999999999999999998888888887 669999999
Q ss_pred ccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457 277 YPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356 (389)
Q Consensus 277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW 356 (389)
|+|-... ++.+|+.||.|..|.+...+ ++..++.+|...|.++ +|+|-|.+|++|+.|.++++|
T Consensus 314 WhP~~~~-lftsgg~Dgsvvh~~v~~~~------p~~~i~~AHd~~iwsl---------~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 314 WHPLNES-LFTSGGSDGSVVHWVVGLEE------PLGEIPPAHDGEIWSL---------AYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred ccccccc-ceeeccCCCceEEEeccccc------cccCCCcccccceeee---------eccccceeEeecCCCcceeee
Confidence 9998765 57899999999999998433 3677778999999999 999999999999999999999
Q ss_pred eccCC
Q 016457 357 LSDDS 361 (389)
Q Consensus 357 ~~~~~ 361 (389)
.-.-+
T Consensus 378 ~r~rp 382 (464)
T KOG0284|consen 378 TRNRP 382 (464)
T ss_pred ccCCC
Confidence 87755
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.8e-43 Score=286.60 Aligned_cols=306 Identities=14% Similarity=0.180 Sum_probs=270.1
Q ss_pred CccccCCCCeEEEEecCc------eeeeee-----------cCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee
Q 016457 13 KSQSCDNVNSIKRFGLKN------SIQTNF-----------GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE 75 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~------~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 75 (389)
..|+++.+...++|++.. ....++ .+..|++++|+.+|.+||+|+.||.++||+.. |..+.+
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~t 271 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLIST 271 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhh
Confidence 567788888999999853 111111 15679999999999999999999999999964 888899
Q ss_pred ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC
Q 016457 76 CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN 155 (389)
Q Consensus 76 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 155 (389)
+..|.++|.++.|+..+ ++|++++.|+++.+||..++.....+..|..+-..+.|- ++..+++++.|+.|+++.+..
T Consensus 272 l~~HkgPI~slKWnk~G--~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~ 348 (524)
T KOG0273|consen 272 LGQHKGPIFSLKWNKKG--TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGE 348 (524)
T ss_pred hhccCCceEEEEEcCCC--CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe-cCceEeecCCCceEEEEEecC
Confidence 99999999999999998 899999999999999999999999999998887889998 778899999999999999999
Q ss_pred CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecC--------CC
Q 016457 156 KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE--------TN 227 (389)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~ 227 (389)
..++.++. +|.++|.+|.|+|.+. +|++++.|++++||... .......+..|...|..+.|+|. .+
T Consensus 349 ~~P~~t~~-GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~----~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 349 DRPVKTFI-GHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMG----QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMN 422 (524)
T ss_pred CCcceeee-cccCceEEEEECCCCc-eEEEecCCCeeEeeecC----CCcchhhhhhhccceeeEeecCCCCccCCCcCC
Confidence 99999999 8999999999999995 99999999999999987 33567778889989999998853 35
Q ss_pred cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc
Q 016457 228 KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT 307 (389)
Q Consensus 228 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~ 307 (389)
..+++++.|++|++||+..+.+++.|.. |..+|.+++|+|+|. |+++|+.||.|.+|+..+++.
T Consensus 423 ~~l~sas~dstV~lwdv~~gv~i~~f~k------------H~~pVysvafS~~g~--ylAsGs~dg~V~iws~~~~~l-- 486 (524)
T KOG0273|consen 423 LMLASASFDSTVKLWDVESGVPIHTLMK------------HQEPVYSVAFSPNGR--YLASGSLDGCVHIWSTKTGKL-- 486 (524)
T ss_pred ceEEEeecCCeEEEEEccCCceeEeecc------------CCCceEEEEecCCCc--EEEecCCCCeeEeccccchhe--
Confidence 6899999999999999999999999987 779999999999999 999999999999999999886
Q ss_pred cCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457 308 IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 308 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~ 359 (389)
.+.. ...+.|..+ +|+.+|.+|..+-.||.+++-++.
T Consensus 487 ----~~s~--~~~~~Ifel---------~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 487 ----VKSY--QGTGGIFEL---------CWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ----eEee--cCCCeEEEE---------EEcCCCCEEEEEecCCCceEEEec
Confidence 3443 345668888 999999999999899999998763
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.7e-44 Score=282.02 Aligned_cols=300 Identities=17% Similarity=0.279 Sum_probs=260.6
Q ss_pred eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457 31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109 (389)
Q Consensus 31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 109 (389)
..+.+.+ .+.|.|+++.|.+..|++|+.|++|+|||+.+|++..++.||-..|..+++++.. .|+++++.|+.|+-|
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH--pYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH--PYLFSAGEDKQVKCW 220 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC--ceEEEecCCCeeEEE
Confidence 4556667 8999999999999999999999999999999999999999999999999999887 799999999999999
Q ss_pred EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457 110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD 189 (389)
Q Consensus 110 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 189 (389)
|+...+.++.+.+|-+.|.|++.+|.-..|++++.|.++++||+|+...+..+. +|..+|.++.+.|.++ .+++|+.|
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dp-qvit~S~D 298 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDP-QVITGSHD 298 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCC-ceEEecCC
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999997 99999999
Q ss_pred CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457 190 GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDV 269 (389)
Q Consensus 190 ~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (389)
++|++||++.+ +....+..|...+.+++.+ |....+++++.| .|+-|++..+..+..+.+ |.
T Consensus 299 ~tvrlWDl~ag----kt~~tlt~hkksvral~lh-P~e~~fASas~d-nik~w~~p~g~f~~nlsg------------h~ 360 (460)
T KOG0285|consen 299 STVRLWDLRAG----KTMITLTHHKKSVRALCLH-PKENLFASASPD-NIKQWKLPEGEFLQNLSG------------HN 360 (460)
T ss_pred ceEEEeeeccC----ceeEeeecccceeeEEecC-CchhhhhccCCc-cceeccCCccchhhcccc------------cc
Confidence 99999999955 5577788899999999999 555667777666 689999999998888877 66
Q ss_pred CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecC
Q 016457 270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGE 349 (389)
Q Consensus 270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~ 349 (389)
..+..++...|+ ++++|+.+|.|.+||.+++...+.. +.+. + .-++....++++.+|+..|..|+||..
T Consensus 361 ~iintl~~nsD~---v~~~G~dng~~~fwdwksg~nyQ~~---~t~v-q----pGSl~sEagI~as~fDktg~rlit~ea 429 (460)
T KOG0285|consen 361 AIINTLSVNSDG---VLVSGGDNGSIMFWDWKSGHNYQRG---QTIV-Q----PGSLESEAGIFASCFDKTGSRLITGEA 429 (460)
T ss_pred ceeeeeeeccCc---eEEEcCCceEEEEEecCcCcccccc---cccc-c----CCccccccceeEEeecccCceEEeccC
Confidence 889999999887 7899999999999999988652111 1111 0 011112223344489999999999999
Q ss_pred CCeEEEEeccCCcc
Q 016457 350 DGRLCCWLSDDSSE 363 (389)
Q Consensus 350 dg~v~iW~~~~~~~ 363 (389)
|.+|++|+-++...
T Consensus 430 dKtIk~~keDe~aT 443 (460)
T KOG0285|consen 430 DKTIKMYKEDEHAT 443 (460)
T ss_pred CcceEEEecccccC
Confidence 99999999887733
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-44 Score=283.08 Aligned_cols=291 Identities=19% Similarity=0.269 Sum_probs=266.7
Q ss_pred ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457 30 NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108 (389)
Q Consensus 30 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i 108 (389)
...+.+.+ ..+|+.+-|+|+-..+++++.|++|++||..+|++...++||++.|.+|+|+..| .+|++++.|-.+++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G--k~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG--KYLATCSSDLSAKL 176 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc--cEEEecCCccchhh
Confidence 34445555 8899999999999999999999999999999999999999999999999999888 89999999999999
Q ss_pred EEccC-CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457 109 WDTRS-FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS 187 (389)
Q Consensus 109 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 187 (389)
||..+ .++++.+.+|...|.+++|-|.+.++++++.|.+|+.|++.++-++.++. +|...|..++.+.+|. ++++++
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGt-i~As~s 254 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGT-IIASCS 254 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCee-EEEecC
Confidence 99986 67788889999999999999999999999999999999999999999999 9999999999999995 999999
Q ss_pred CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecC--------------CCcEEEEEecCCcEEEEEcCCCceeEEe
Q 016457 188 VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE--------------TNKHLWCLTHIETLSIWDWKDGQNVASF 253 (389)
Q Consensus 188 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 253 (389)
.|.+|++|-+.++ .+...+..|+.+|.+++|.|. .++++.+++.|++|++||+.++.++.++
T Consensus 255 ~dqtl~vW~~~t~----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 255 NDQTLRVWVVATK----QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred CCceEEEEEeccc----hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 9999999999854 455667778889999988642 2369999999999999999999999999
Q ss_pred ecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCccc
Q 016457 254 ENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQ 333 (389)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 333 (389)
.+ |...|.+++|+|.|+ ||+++..|+++++||+.++++ ...++ .|...|+++
T Consensus 331 ~g------------hdnwVr~~af~p~Gk--yi~ScaDDktlrvwdl~~~~c------mk~~~-ah~hfvt~l------- 382 (406)
T KOG0295|consen 331 VG------------HDNWVRGVAFSPGGK--YILSCADDKTLRVWDLKNLQC------MKTLE-AHEHFVTSL------- 382 (406)
T ss_pred ec------------ccceeeeeEEcCCCe--EEEEEecCCcEEEEEecccee------eeccC-CCcceeEEE-------
Confidence 98 779999999999999 999999999999999999887 67776 999999999
Q ss_pred CCCCCCCceeEEEecCCCeEEEEec
Q 016457 334 GRPAQSHGIFGWTGGEDGRLCCWLS 358 (389)
Q Consensus 334 ~~~~s~~~~~l~s~~~dg~v~iW~~ 358 (389)
.|..+..|++||+-|.++++|..
T Consensus 383 --Dfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 383 --DFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred --ecCCCCceEEeccccceeeeeec
Confidence 89988899999999999999974
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.9e-42 Score=266.32 Aligned_cols=265 Identities=18% Similarity=0.249 Sum_probs=235.8
Q ss_pred CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc------eeeeeecCCCCcE
Q 016457 13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG------QYSGECKGHSSTV 83 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~------~~~~~~~~~~~~v 83 (389)
..-+++.||.+.+||.- +..+.+.- ...|..++|+|.|+++|+|+-|+...||++.+. +....+.+|++-+
T Consensus 69 ~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgyl 148 (343)
T KOG0286|consen 69 RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYL 148 (343)
T ss_pred eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcccee
Confidence 45678999999999974 34444544 789999999999999999999999999999854 4456789999999
Q ss_pred EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeC-CCCeEEEeecCCeEEEEECcCCceeeee
Q 016457 84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGG-STDYLLAAGCGSQIQFWDWRNKKQVACL 162 (389)
Q Consensus 84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 162 (389)
.|+.|.+++ .|+|++.|.+..+||+++++.+..|.+|.+.|.+++++| +.+.+++++.|+..++||+|.+..+++|
T Consensus 149 ScC~f~dD~---~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF 225 (343)
T KOG0286|consen 149 SCCRFLDDN---HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF 225 (343)
T ss_pred EEEEEcCCC---ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence 999999866 899999999999999999999999999999999999999 7888999999999999999999999999
Q ss_pred eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457 163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIW 242 (389)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~ 242 (389)
. +|...|+++.|.|+|. -|++|+.|+++++||+|... ...+..-.....+|++++|+ ..|++|++|..|..+.+|
T Consensus 226 ~-ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~d~~c~vW 300 (343)
T KOG0286|consen 226 E-GHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFS-KSGRLLFAGYDDFTCNVW 300 (343)
T ss_pred c-ccccccceEEEccCCC-eeeecCCCceeEEEeecCCc--EEeeeccCcccCCceeEEEc-ccccEEEeeecCCceeEe
Confidence 9 9999999999999995 99999999999999999542 11122222344689999999 889999999999999999
Q ss_pred EcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
|.-.++.+..+.+ |+..|.++..+|||- .+++|+.|..++||.
T Consensus 301 Dtlk~e~vg~L~G------------HeNRvScl~~s~DG~--av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 301 DTLKGERVGVLAG------------HENRVSCLGVSPDGM--AVATGSWDSTLRIWA 343 (343)
T ss_pred eccccceEEEeec------------cCCeeEEEEECCCCc--EEEecchhHheeecC
Confidence 9999999988887 779999999999998 889999999999994
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-41 Score=256.84 Aligned_cols=293 Identities=21% Similarity=0.314 Sum_probs=245.8
Q ss_pred eeeeec-CcceEEEeecCC-CCeEEEEecCCeEEEEeCCCc---eeeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457 32 IQTNFG-DDYVFEIVPKND-WSLMAVSLSTNVVKLYSPVTG---QYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGT 105 (389)
Q Consensus 32 ~~~~~~-~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~---~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~ 105 (389)
++.+.+ .+.|..++|+|- |..||+++.|+.|+||+...+ .+...+ .+|+..|.+++|+|.+ ++|++|+.|.+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g--~~La~aSFD~t 84 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG--RYLASASFDAT 84 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC--cEEEEeeccce
Confidence 455666 788999999998 889999999999999998743 333333 4699999999999999 79999999999
Q ss_pred EEEEEccC--CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC---ceeeeeeecccCCeeEEEEecCCC
Q 016457 106 IRAWDTRS--FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK---KQVACLEESHVEDVTQVHFVPNNQ 180 (389)
Q Consensus 106 i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~ 180 (389)
+.||.-.. .+++.++++|...|.|++|+++|++|++++.|+.|-||.+... ++...++ +|...|..+.|+|...
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPTED 163 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCCcc
Confidence 99998654 4788999999999999999999999999999999999998744 4567777 8999999999999986
Q ss_pred CeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccc
Q 016457 181 NKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLA 260 (389)
Q Consensus 181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 260 (389)
+|++++.|++|++|+-.. .....+...+.+|...|.+++|. +.|..|++++.|++++||-..+ .+..
T Consensus 164 -lL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~-~~G~rl~s~sdD~tv~Iw~~~~-----~~~~----- 230 (312)
T KOG0645|consen 164 -LLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFD-NIGSRLVSCSDDGTVSIWRLYT-----DLSG----- 230 (312)
T ss_pred -eeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEec-CCCceEEEecCCcceEeeeecc-----Ccch-----
Confidence 999999999999998874 33567788889999999999999 7788999999999999998652 1221
Q ss_pred cCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCC
Q 016457 261 SDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSH 340 (389)
Q Consensus 261 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~ 340 (389)
.|...+..+.|. ++ .|++++.|+.|++|.............+......|...|+++ .|+|.
T Consensus 231 ------~~sr~~Y~v~W~-~~---~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV---------~w~p~ 291 (312)
T KOG0645|consen 231 ------MHSRALYDVPWD-NG---VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV---------QWNPK 291 (312)
T ss_pred ------hcccceEeeeec-cc---ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE---------EEcCC
Confidence 166889999998 44 789999999999998775432222233444556899999999 88884
Q ss_pred -ceeEEEecCCCeEEEEecc
Q 016457 341 -GIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 341 -~~~l~s~~~dg~v~iW~~~ 359 (389)
..+|++||+||.|++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 6789999999999999875
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-41 Score=256.67 Aligned_cols=272 Identities=17% Similarity=0.269 Sum_probs=230.4
Q ss_pred CccccCCCCeEEEEecC-------ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEE
Q 016457 13 KSQSCDNVNSIKRFGLK-------NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVN 84 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~-------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~ 84 (389)
..-+++.|.++.+|++. .+++.+.| ...|..++.++||++.++++.|+++++||+.+|+..+.|.+|...|.
T Consensus 30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl 109 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL 109 (315)
T ss_pred eEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE
Confidence 45578899999999974 46788888 88999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC--CCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCCceee
Q 016457 85 QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG--SQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNKKQVA 160 (389)
Q Consensus 85 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~ 160 (389)
+++|++++ ..+++|+.|.+|++||+.. .+..++..+ .+-|+|+.|+|+ +..+++++.|++|++||+++.+...
T Consensus 110 sva~s~dn--~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 110 SVAFSTDN--RQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred EEEecCCC--ceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 99999999 7999999999999999864 455555544 688999999998 6788889999999999999999999
Q ss_pred eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEE
Q 016457 161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLS 240 (389)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~ 240 (389)
.+. +|.+.++.++++|+|. ++++|+.||.+.+||++.++ . .....+...|.+++|+ |+. +.++...+..|+
T Consensus 187 ~~~-gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k----~-lysl~a~~~v~sl~fs-pnr-ywL~~at~~sIk 257 (315)
T KOG0279|consen 187 TFI-GHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGK----N-LYSLEAFDIVNSLCFS-PNR-YWLCAATATSIK 257 (315)
T ss_pred ccc-cccccEEEEEECCCCC-EEecCCCCceEEEEEccCCc----e-eEeccCCCeEeeEEec-CCc-eeEeeccCCceE
Confidence 998 9999999999999995 99999999999999999543 3 4556688899999999 543 555555666799
Q ss_pred EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457 241 IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN 301 (389)
Q Consensus 241 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 301 (389)
|||+.++.++..+.....-.+ .........+++|+++|+ .|++|-.|+.|++|.+.
T Consensus 258 Iwdl~~~~~v~~l~~d~~g~s---~~~~~~~clslaws~dG~--tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 258 IWDLESKAVVEELKLDGIGPS---SKAGDPICLSLAWSADGQ--TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeccchhhhhhccccccccc---cccCCcEEEEEEEcCCCc--EEEeeecCCcEEEEEee
Confidence 999999988877653211100 001235678899999999 78999999999999875
No 17
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-41 Score=252.43 Aligned_cols=286 Identities=18% Similarity=0.279 Sum_probs=248.7
Q ss_pred eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457 32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110 (389)
Q Consensus 32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 110 (389)
...+.+ .++|+++.|+-||++.++++.|.+|++|++..|.+++++.+|...|..++.+.++ ..+++|+.|..+.+||
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn--skf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN--SKFASCGGDKAVQVWD 87 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc--cccccCCCCceEEEEE
Confidence 445566 8999999999999999999999999999999999999999999999999999888 6999999999999999
Q ss_pred ccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC--ceeeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457 111 TRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK--KQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188 (389)
Q Consensus 111 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 188 (389)
+.+|+.++.+.+|...|+.+.|+.....+++++.|.++++||.++. ++++.+. .....|.++.... ..|++|+.
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~~---heIvaGS~ 163 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVAE---HEIVAGSV 163 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEecc---cEEEeecc
Confidence 9999999999999999999999977778888888999999999864 6788887 6778899999876 48999999
Q ss_pred CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCC
Q 016457 189 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDD 268 (389)
Q Consensus 189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (389)
||+++.||++.+. ........+|+++.|+ ++++..++++.|+++++.|-.+|+.++.+.+++ .
T Consensus 164 DGtvRtydiR~G~------l~sDy~g~pit~vs~s-~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk----------n 226 (307)
T KOG0316|consen 164 DGTVRTYDIRKGT------LSSDYFGHPITSVSFS-KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK----------N 226 (307)
T ss_pred CCcEEEEEeecce------eehhhcCCcceeEEec-CCCCEEEEeeccceeeecccchhHHHHHhcccc----------c
Confidence 9999999999552 2223356799999999 889999999999999999999999999999976 4
Q ss_pred CCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccccee-eeeccCCCcccCCCCCCCceeEEEe
Q 016457 269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAV-VRSVLPMPSVQGRPAQSHGIFGWTG 347 (389)
Q Consensus 269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~s~~~~~l~s~ 347 (389)
..+-.+++++.... .+++|++||.|++||+....+ +..+. .|... |.++ ++.|.-.-++++
T Consensus 227 ~eykldc~l~qsdt--hV~sgSEDG~Vy~wdLvd~~~------~sk~~-~~~~v~v~dl---------~~hp~~~~f~~A 288 (307)
T KOG0316|consen 227 MEYKLDCCLNQSDT--HVFSGSEDGKVYFWDLVDETQ------ISKLS-VVSTVIVTDL---------SCHPTMDDFITA 288 (307)
T ss_pred ceeeeeeeecccce--eEEeccCCceEEEEEecccee------eeeec-cCCceeEEee---------ecccCccceeEe
Confidence 56777888888777 889999999999999998776 56665 55554 8888 788877777877
Q ss_pred cCCCeEEEEecc
Q 016457 348 GEDGRLCCWLSD 359 (389)
Q Consensus 348 ~~dg~v~iW~~~ 359 (389)
+ ++.+.+|.-.
T Consensus 289 ~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 289 T-GHGDLFWYQE 299 (307)
T ss_pred c-CCceeceeeh
Confidence 7 5667777543
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.8e-40 Score=271.83 Aligned_cols=316 Identities=17% Similarity=0.226 Sum_probs=260.1
Q ss_pred CccccCCCCeEEEEecCc--eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec---CCCCcEEEE
Q 016457 13 KSQSCDNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK---GHSSTVNQI 86 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~---~~~~~v~~i 86 (389)
+.+|+++|++|-+|+-.. --.++.. ..-|+|+.|+|||.++|+++.||+|.+||-.+|+.+..+. +|.+.|.++
T Consensus 162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfal 241 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFAL 241 (603)
T ss_pred EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEE
Confidence 788999999999998431 1122233 6789999999999999999999999999999999999987 899999999
Q ss_pred EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCC---CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee
Q 016457 87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGS---QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE 163 (389)
Q Consensus 87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 163 (389)
+|+||+ ..++|++.|.+++|||+.+.+++.++.... ..-..+-| ++..|++.+.+|.|.+++.....++..+.
T Consensus 242 sWsPDs--~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW--qkd~lItVSl~G~in~ln~~d~~~~~~i~ 317 (603)
T KOG0318|consen 242 SWSPDS--TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW--QKDHLITVSLSGTINYLNPSDPSVLKVIS 317 (603)
T ss_pred EECCCC--ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE--eCCeEEEEEcCcEEEEecccCCChhheec
Confidence 999999 799999999999999999999999988652 33344556 47899999999999999999999888888
Q ss_pred ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC-------cc--------------------ceee------
Q 016457 164 ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD-------DL--------------------LESV------ 210 (389)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-------~~--------------------~~~~------ 210 (389)
+|...|+++..+|++. .|++|+.||.|.-||..++.... .. ++.+
T Consensus 318 -GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 318 -GHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred -ccccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence 9999999999999995 99999999999999987543110 00 0000
Q ss_pred ------------------------------------e--------ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457 211 ------------------------------------I--------NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD 246 (389)
Q Consensus 211 ------------------------------------~--------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 246 (389)
. ...-...+++++ +++..+++|+.|+.|++|.+..
T Consensus 396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~-~~~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS-PDGSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred ccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc-CCCCEEEEecccceEEEEEecC
Confidence 0 000123556777 7888999999999999999987
Q ss_pred CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457 247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV 326 (389)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 326 (389)
........... |..+++.++|+||+. ||++|...+.+.+||+.+.+. ......-|+..|.++
T Consensus 475 ~~l~ee~~~~~----------h~a~iT~vaySpd~~--yla~~Da~rkvv~yd~~s~~~------~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 475 DELKEEAKLLE----------HRAAITDVAYSPDGA--YLAAGDASRKVVLYDVASREV------KTNRWAFHTAKINCV 536 (603)
T ss_pred Ccccceeeeec----------ccCCceEEEECCCCc--EEEEeccCCcEEEEEcccCce------ecceeeeeeeeEEEE
Confidence 65443322222 779999999999999 999999999999999998875 122222599999999
Q ss_pred cCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457 327 LPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS 362 (389)
Q Consensus 327 ~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~ 362 (389)
+|+|+.+++|||+.|-.|.||+++.+.
T Consensus 537 ---------aWsP~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 537 ---------AWSPNNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred ---------EeCCCceEEEeccccceEEEEEccChh
Confidence 999999999999999999999999773
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-40 Score=294.23 Aligned_cols=288 Identities=23% Similarity=0.339 Sum_probs=252.9
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce--eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc-cCC
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT-RSF 114 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~-~~~ 114 (389)
...|.++.|+++|+.+++++.++.+++|+..+++ ....+.+|...|.+++|+|++ .++++++.|++|+|||+ ..+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~--~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG--SYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC--cEEEEecCCceEEEeeccCCC
Confidence 6789999999999999999999999999998777 777788999999999999999 79999999999999999 556
Q ss_pred eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457 115 HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT 194 (389)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 194 (389)
..++++++|...|++++|+|.++.+++++.|++|++||+++++++..+. +|...|++++|++++. +|++++.|+.|++
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~-~l~s~s~d~~i~v 314 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPDGN-LLVSASYDGTIRV 314 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCCCC-EEEEcCCCccEEE
Confidence 8999999999999999999999888889999999999999999999999 9999999999999995 9999999999999
Q ss_pred EecCCCCCCCccceeeeccCC--ceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457 195 FDTGGDINDDDLLESVINVGT--SVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF 272 (389)
Q Consensus 195 ~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (389)
||+.++... +...+..+.. ++..+.|+ +++.++++++.|+.+++||+..+.....+.++... ...+
T Consensus 315 wd~~~~~~~--~~~~~~~~~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~---------~~~~ 382 (456)
T KOG0266|consen 315 WDLETGSKL--CLKLLSGAENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL---------VRCI 382 (456)
T ss_pred EECCCCcee--eeecccCCCCCCceeEEEEC-CCCcEEEEecCCCeEEEEEccCCcceeeecccCCc---------ceeE
Confidence 999976421 2334444443 58999999 88999999999999999999999999998875310 0244
Q ss_pred eeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccc-ceeeeeccCCCcccCCCCCCCceeEEEec--C
Q 016457 273 VDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGH-TAVVRSVLPMPSVQGRPAQSHGIFGWTGG--E 349 (389)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~s~~~~~l~s~~--~ 349 (389)
.+...++.+. ++++|+.|+.|++|++.++.. +..+. +| ...+..+ ++++...++++++ .
T Consensus 383 ~~~~~~~~~~--~i~sg~~d~~v~~~~~~s~~~------~~~l~-~h~~~~~~~~---------~~~~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 383 FSPTLSTGGK--LIYSGSEDGSVYVWDSSSGGI------LQRLE-GHSKAAVSDL---------SSHPTENLIASSSFEG 444 (456)
T ss_pred ecccccCCCC--eEEEEeCCceEEEEeCCccch------hhhhc-CCCCCceecc---------ccCCCcCeeeecCcCC
Confidence 4556677788 999999999999999998766 56665 89 7888888 9999999999998 7
Q ss_pred CCeEEEEecc
Q 016457 350 DGRLCCWLSD 359 (389)
Q Consensus 350 dg~v~iW~~~ 359 (389)
|+.+++|..+
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 9999999865
No 20
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6e-42 Score=281.61 Aligned_cols=291 Identities=18% Similarity=0.214 Sum_probs=250.4
Q ss_pred Cceeeeeec-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCC-ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457 29 KNSIQTNFG-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVT-GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105 (389)
Q Consensus 29 ~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~ 105 (389)
+..+.++.+ ...|.++.|.| .+.+|++++.|+.|+||++.. ++++.++.+|..+|.+++|++.+ ..++|++.|+.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g--~~fLS~sfD~~ 281 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG--TSFLSASFDRF 281 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC--Ceeeeeeccee
Confidence 345677778 89999999999 889999999999999999876 89999999999999999999999 79999999999
Q ss_pred EEEEEccCCeEEEEEEcCCCCeEEEEEeCCC-CeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGST-DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 184 (389)
|++||+++|+++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||+|+++.++.+. .|-+.|..+.|-+++. .++
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~g~-rFi 358 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDEGR-RFI 358 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccCCc-eEe
Confidence 99999999999999987 4789999999998 667778889999999999999999998 8999999999999996 999
Q ss_pred EEeCCCcEEEEecCCCCCCCcccee-eeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc---eeEEeecccccc
Q 016457 185 SASVDGLICTFDTGGDINDDDLLES-VINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ---NVASFENARSLA 260 (389)
Q Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~ 260 (389)
+.+.|+.++||+.+.+. .+.. .........++..+ |++.++++-+.|+.|.+|.+...- ..+.|.++.
T Consensus 359 ssSDdks~riWe~~~~v----~ik~i~~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~--- 430 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPV----PIKNIADPEMHTMPCLTLH-PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS--- 430 (503)
T ss_pred eeccCccEEEEEcCCCc----cchhhcchhhccCcceecC-CCCCeehhhccCceEEEEecccccccCHhhhhccee---
Confidence 99999999999999543 1211 12233456678888 788899999999999999976432 234455654
Q ss_pred cCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCC
Q 016457 261 SDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSH 340 (389)
Q Consensus 261 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~ 340 (389)
-.++-..+.|||||. +|++|+.||.+.+||..+.++ +..+. +|.+++..+ .|.|.
T Consensus 431 -------vaGys~~v~fSpDG~--~l~SGdsdG~v~~wdwkt~kl------~~~lk-ah~~~ci~v---------~wHP~ 485 (503)
T KOG0282|consen 431 -------VAGYSCQVDFSPDGR--TLCSGDSDGKVNFWDWKTTKL------VSKLK-AHDQPCIGV---------DWHPV 485 (503)
T ss_pred -------ccCceeeEEEcCCCC--eEEeecCCccEEEeechhhhh------hhccc-cCCcceEEE---------EecCC
Confidence 347788999999999 999999999999999999877 56665 999999999 66665
Q ss_pred c-eeEEEecCCCeEEEEe
Q 016457 341 G-IFGWTGGEDGRLCCWL 357 (389)
Q Consensus 341 ~-~~l~s~~~dg~v~iW~ 357 (389)
. ..+||||.||.|++|+
T Consensus 486 e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 486 EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceeEecccCceeEecC
Confidence 4 3589999999999996
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-40 Score=273.46 Aligned_cols=287 Identities=19% Similarity=0.290 Sum_probs=253.0
Q ss_pred cCcceEEEeecCCCC-eEEEEecCCeEEEEeCCC--ce--eeeeec----------CCCCcEEEEEEeCCCCCCEEEEEe
Q 016457 37 GDDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVT--GQ--YSGECK----------GHSSTVNQISFSGPSTPHVLHSCS 101 (389)
Q Consensus 37 ~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~--~~--~~~~~~----------~~~~~v~~i~~~~~~~~~~l~s~~ 101 (389)
+..+|.+.+|+|-.. .+++|+.+-..++|++.. .. ....++ .....|++++|+.+| ..||+|+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G--~~LatG~ 254 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG--TLLATGS 254 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC--CeEEEee
Confidence 478899999999776 899999999999999863 11 111111 134679999999999 7999999
Q ss_pred cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCC
Q 016457 102 SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN 181 (389)
Q Consensus 102 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 181 (389)
.||.++||+. .|..+.++..|+++|.++.|+..+.+|++++-|+++.+||..+++..+.+. .|..+-..+.|-.+.
T Consensus 255 ~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~~~~-- 330 (524)
T KOG0273|consen 255 EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDWQSND-- 330 (524)
T ss_pred cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee-eccCCccceEEecCc--
Confidence 9999999996 578888999999999999999999999999999999999999999999998 787777889998775
Q ss_pred eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccccc
Q 016457 182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLAS 261 (389)
Q Consensus 182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 261 (389)
.|++++.|+.|+++.+. ...+...+.+|..+|.++.|. +.+.+|++++.|++++||+.......+.+..
T Consensus 331 ~F~ts~td~~i~V~kv~----~~~P~~t~~GH~g~V~alk~n-~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~------ 399 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVG----EDRPVKTFIGHHGEVNALKWN-PTGSLLASCSDDGTLKIWSMGQSNSVHDLQA------ 399 (524)
T ss_pred eEeecCCCceEEEEEec----CCCcceeeecccCceEEEEEC-CCCceEEEecCCCeeEeeecCCCcchhhhhh------
Confidence 79999999999999998 457888999999999999999 7889999999999999999998888888887
Q ss_pred CCccCCCCCceeeecccCCCC-------eEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccC
Q 016457 262 DSWTLDDVDYFVDCHYPGEGE-------NLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQG 334 (389)
Q Consensus 262 ~~~~~~~~~~i~~~~~~~~~~-------~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 334 (389)
|+..|..+.|+|.|. ++.+++++.|++|++||+..+.. +..+. .|+.+|.++
T Consensus 400 ------Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~------i~~f~-kH~~pVysv-------- 458 (524)
T KOG0273|consen 400 ------HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP------IHTLM-KHQEPVYSV-------- 458 (524)
T ss_pred ------hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce------eEeec-cCCCceEEE--------
Confidence 778999999999763 34689999999999999999876 78886 899999999
Q ss_pred CCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457 335 RPAQSHGIFGWTGGEDGRLCCWLSDDSS 362 (389)
Q Consensus 335 ~~~s~~~~~l~s~~~dg~v~iW~~~~~~ 362 (389)
+|||+|+|||+|+.||.|.+|++....
T Consensus 459 -afS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 459 -AFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred -EecCCCcEEEecCCCCeeEeccccchh
Confidence 999999999999999999999998773
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.8e-40 Score=261.95 Aligned_cols=295 Identities=16% Similarity=0.225 Sum_probs=252.1
Q ss_pred Cceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457 29 KNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIR 107 (389)
Q Consensus 29 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~ 107 (389)
...+.++.. .+.|++++.+|+.+++++|+.|..-.||++.+|+....+.+|++.|+++.|+.++ .+||||+.+|.|+
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg--tlLATGdmsG~v~ 131 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG--TLLATGDMSGKVL 131 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc--eEEEecCCCccEE
Confidence 455667776 9999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred EEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457 108 AWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS 187 (389)
Q Consensus 108 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 187 (389)
||+..++.....+......+.-+.|+|....|++++.||.+.+|.+.++...+.+. +|..++++=.|.|+|+ .++++.
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGK-r~~tgy 209 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGK-RILTGY 209 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCc-eEEEEe
Confidence 99999999999887667889999999999999999999999999999988888888 9999999999999997 999999
Q ss_pred CCCcEEEEecCCCCCCCccc---------------------------------------eeee--------ccCCceeeE
Q 016457 188 VDGLICTFDTGGDINDDDLL---------------------------------------ESVI--------NVGTSVGKV 220 (389)
Q Consensus 188 ~d~~i~i~d~~~~~~~~~~~---------------------------------------~~~~--------~~~~~i~~~ 220 (389)
.||+|++||+.++.+....- .... .+...+.++
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 99999999999764211000 0000 011112222
Q ss_pred EEec--CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457 221 GFFG--ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF 298 (389)
Q Consensus 221 ~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~ 298 (389)
.+.| ..-.+.++|+-||+|.|||+...+..+.+. |+..|+.+.|-+ .. +|++++.+|.|+.|
T Consensus 290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-------------he~~V~~l~w~~-t~--~l~t~c~~g~v~~w 353 (399)
T KOG0296|consen 290 ESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-------------HEDGVTKLKWLN-TD--YLLTACANGKVRQW 353 (399)
T ss_pred hhcccccccchhhcccccceEEEEecccchhheecc-------------CCCceEEEEEcC-cc--hheeeccCceEEee
Confidence 2221 223467899999999999998887777765 779999999999 55 88999999999999
Q ss_pred EeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457 299 PVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~ 359 (389)
|.+++++ +..+. ||...|.++ +++|++++++|+|.|++.+|+++.
T Consensus 354 DaRtG~l------~~~y~-GH~~~Il~f---------~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 354 DARTGQL------KFTYT-GHQMGILDF---------ALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eccccce------EEEEe-cCchheeEE---------EEcCCCcEEEEecCCCeEEEEecC
Confidence 9999987 56665 999999999 999999999999999999999875
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-41 Score=293.98 Aligned_cols=284 Identities=19% Similarity=0.240 Sum_probs=249.1
Q ss_pred eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457 31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109 (389)
Q Consensus 31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 109 (389)
+..++.. ...++|..|++|+.+||.|..|..|++|.+... .++.+++ . .+.. .+=+.+.|-.+.+.
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-~------~~l~-----~~d~~sad~~~~~~ 436 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-A------SDLS-----NIDTESADVDVDML 436 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-h------hhhc-----cccccccchhhhhc
Confidence 4556666 888999999999999999999999999998754 3333332 1 1211 22233445457778
Q ss_pred EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457 110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD 189 (389)
Q Consensus 110 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 189 (389)
|........++.+|.++|..+.|+|+.++|++++.|+++++|.+.+...+..+. +|..+|..+.|+|.| .+||+++.|
T Consensus 437 D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~G-yYFatas~D 514 (707)
T KOG0263|consen 437 DDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRG-YYFATASHD 514 (707)
T ss_pred cccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCc-eEEEecCCC
Confidence 888877888899999999999999999999999999999999999999999998 999999999999999 699999999
Q ss_pred CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457 190 GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDV 269 (389)
Q Consensus 190 ~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (389)
++-++|.... ..+.+.+.+|-+.|.++.|+ |+..++++|+.|.++++||..+|..++.|.+ |.
T Consensus 515 ~tArLWs~d~----~~PlRifaghlsDV~cv~FH-PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G------------H~ 577 (707)
T KOG0263|consen 515 QTARLWSTDH----NKPLRIFAGHLSDVDCVSFH-PNSNYVATGSSDRTVRLWDVSTGNSVRIFTG------------HK 577 (707)
T ss_pred ceeeeeeccc----CCchhhhcccccccceEEEC-CcccccccCCCCceEEEEEcCCCcEEEEecC------------CC
Confidence 9999999983 46788888999999999999 7889999999999999999999999999988 77
Q ss_pred CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecC
Q 016457 270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGE 349 (389)
Q Consensus 270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~ 349 (389)
.+|.+++|+|+|. ||++|+.||.|.+||+.++.. +..+. +|++.|.++ .||.||..||+||.
T Consensus 578 ~~V~al~~Sp~Gr--~LaSg~ed~~I~iWDl~~~~~------v~~l~-~Ht~ti~Sl---------sFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 578 GPVTALAFSPCGR--YLASGDEDGLIKIWDLANGSL------VKQLK-GHTGTIYSL---------SFSRDGNVLASGGA 639 (707)
T ss_pred CceEEEEEcCCCc--eEeecccCCcEEEEEcCCCcc------hhhhh-cccCceeEE---------EEecCCCEEEecCC
Confidence 9999999999999 999999999999999999876 66665 999999999 99999999999999
Q ss_pred CCeEEEEeccCCccc
Q 016457 350 DGRLCCWLSDDSSEI 364 (389)
Q Consensus 350 dg~v~iW~~~~~~~~ 364 (389)
|.+|++||+....+.
T Consensus 640 DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 640 DNSVRLWDLTKVIEL 654 (707)
T ss_pred CCeEEEEEchhhccc
Confidence 999999999876443
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.5e-39 Score=274.27 Aligned_cols=285 Identities=24% Similarity=0.343 Sum_probs=250.6
Q ss_pred eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc
Q 016457 34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR 112 (389)
Q Consensus 34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~ 112 (389)
++.+ .+.|.+++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|++ +++++++.||.|++|++.
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG--TYLASGSSDKTIRLWDLE 81 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC--CEEEEEcCCCeEEEEEcC
Confidence 3445 7889999999999999999999999999999888888888999999999999998 799999999999999999
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcE
Q 016457 113 SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI 192 (389)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 192 (389)
+++.+..+..|...+.++.|+|++..+++++.++.|.+||+++++....+. .|...+.++.|+|++. ++++++.++.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGT-FVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCC-EEEEEcCCCcE
Confidence 988888999988899999999886666666669999999999888888887 7899999999999974 88888779999
Q ss_pred EEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457 193 CTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF 272 (389)
Q Consensus 193 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (389)
++||++++ .....+..+...+.++.|+ +++..+++++.++.|++||+..++.+..+.. |...+
T Consensus 160 ~i~d~~~~----~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~------------~~~~i 222 (289)
T cd00200 160 KLWDLRTG----KCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG------------HENGV 222 (289)
T ss_pred EEEEcccc----ccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECCCCceecchhh------------cCCce
Confidence 99999843 3455566778899999999 6777888888899999999998888877754 55789
Q ss_pred eeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCe
Q 016457 273 VDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGR 352 (389)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 352 (389)
.++.|+|++. ++++++.||.|++|++.+++. +..+. +|...|.++ +|++++.+|++++.||.
T Consensus 223 ~~~~~~~~~~--~~~~~~~~~~i~i~~~~~~~~------~~~~~-~~~~~i~~~---------~~~~~~~~l~~~~~d~~ 284 (289)
T cd00200 223 NSVAFSPDGY--LLASGSEDGTIRVWDLRTGEC------VQTLS-GHTNSVTSL---------AWSPDGKRLASGSADGT 284 (289)
T ss_pred EEEEEcCCCc--EEEEEcCCCcEEEEEcCCcee------EEEcc-ccCCcEEEE---------EECCCCCEEEEecCCCe
Confidence 9999999976 788888899999999987665 55665 888899999 99999999999999999
Q ss_pred EEEEe
Q 016457 353 LCCWL 357 (389)
Q Consensus 353 v~iW~ 357 (389)
|++|+
T Consensus 285 i~iw~ 289 (289)
T cd00200 285 IRIWD 289 (289)
T ss_pred EEecC
Confidence 99996
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-40 Score=282.38 Aligned_cols=316 Identities=17% Similarity=0.188 Sum_probs=266.7
Q ss_pred CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCC--eEEEEecCCeEEEEeCCCcee-eeeecCCCCcEEE
Q 016457 12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWS--LMAVSLSTNVVKLYSPVTGQY-SGECKGHSSTVNQ 85 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~--~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~~~v~~ 85 (389)
...|+++.|+.+++||+. .+...++| ++.|.++.|+|+-. .|++|..|+++++||+.+... +..+..|.+.|++
T Consensus 118 ~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 118 TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 457899999999999996 57888999 99999999999764 589999999999999986554 7888899999999
Q ss_pred EEEeCCCCCCEEEEEecCCeEEEEEccCC---------------------------------------------------
Q 016457 86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSF--------------------------------------------------- 114 (389)
Q Consensus 86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------------------------------------------------- 114 (389)
++|.+++ ..+++++.|..+.+||+.+.
T Consensus 198 L~~~~d~--~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~ 275 (775)
T KOG0319|consen 198 LAFSEDS--LELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYK 275 (775)
T ss_pred eeeccCC--ceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhh
Confidence 9999998 68888888888888886432
Q ss_pred --------------------------------------------------------------------------------
Q 016457 115 -------------------------------------------------------------------------------- 114 (389)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (389)
T Consensus 276 ~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~ 355 (775)
T KOG0319|consen 276 QRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT 355 (775)
T ss_pred hccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCC
Confidence
Q ss_pred eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc----eeeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457 115 HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK----QVACLEESHVEDVTQVHFVPNNQNKVVSASVDG 190 (389)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 190 (389)
.....+.+|...|.++.....+..+++++.|.++++|.++++. ++.... +|...|.+++++..+..+|++++.|+
T Consensus 356 ~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~-gH~~svgava~~~~~asffvsvS~D~ 434 (775)
T KOG0319|consen 356 SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN-GHTNSVGAVAGSKLGASFFVSVSQDC 434 (775)
T ss_pred CceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc-ccccccceeeecccCccEEEEecCCc
Confidence 0011345677778888844366678888889999999885432 345555 89999999999988888999999999
Q ss_pred cEEEEecCCCCCCCccc-----eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCcc
Q 016457 191 LICTFDTGGDINDDDLL-----ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWT 265 (389)
Q Consensus 191 ~i~i~d~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 265 (389)
++++|++...++...++ .....|...|++++++ |+..++++|+.|++.+||++.+.....++.+
T Consensus 435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le~~~l~~vLsG---------- 503 (775)
T KOG0319|consen 435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA-PNDKLIATGSQDKTAKIWDLEQLRLLGVLSG---------- 503 (775)
T ss_pred eEEEecCCCcccccccceehhhHHHHhhcccccceEec-CCCceEEecccccceeeecccCceEEEEeeC----------
Confidence 99999998532222111 1234688999999999 7778999999999999999999999999998
Q ss_pred CCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEE
Q 016457 266 LDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGW 345 (389)
Q Consensus 266 ~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~ 345 (389)
|...++++.|+|..+ .++++|.|++|+||.+.+..+ +.++. ||+..|..+ .|-.+|+.|+
T Consensus 504 --H~RGvw~V~Fs~~dq--~laT~SgD~TvKIW~is~fSC------lkT~e-GH~~aVlra---------~F~~~~~qli 563 (775)
T KOG0319|consen 504 --HTRGVWCVSFSKNDQ--LLATCSGDKTVKIWSISTFSC------LKTFE-GHTSAVLRA---------SFIRNGKQLI 563 (775)
T ss_pred --CccceEEEEeccccc--eeEeccCCceEEEEEecccee------eeeec-CccceeEee---------eeeeCCcEEE
Confidence 669999999999998 889999999999999999887 88887 999999999 9999999999
Q ss_pred EecCCCeEEEEeccCC
Q 016457 346 TGGEDGRLCCWLSDDS 361 (389)
Q Consensus 346 s~~~dg~v~iW~~~~~ 361 (389)
||+.||-|++|++...
T Consensus 564 S~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 564 SAGADGLIKLWNIKTN 579 (775)
T ss_pred eccCCCcEEEEeccch
Confidence 9999999999999976
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-39 Score=278.23 Aligned_cols=311 Identities=15% Similarity=0.261 Sum_probs=259.9
Q ss_pred CCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecC-CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457 19 NVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLST-NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP 94 (389)
Q Consensus 19 ~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 94 (389)
..|...+|.+. ..++.+.- ...|..++|+..|..||.|+.. |++-||+.+....+...++|...+++++++|||
T Consensus 285 ssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-- 362 (893)
T KOG0291|consen 285 SSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-- 362 (893)
T ss_pred cCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC--
Confidence 44666677765 46666666 7899999999999999999874 799999999999999999999999999999999
Q ss_pred CEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEE
Q 016457 95 HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVH 174 (389)
Q Consensus 95 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 174 (389)
+++++|+.||.|+|||..++-+..+|..|.+.|+.+.|+..++.+++++.||+|+.||+...+..+++..+..-...|++
T Consensus 363 q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva 442 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA 442 (893)
T ss_pred cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999998855666788999
Q ss_pred EecCCCCeEEEEeCCCc-EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc-eeEE
Q 016457 175 FVPNNQNKVVSASVDGL-ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ-NVAS 252 (389)
Q Consensus 175 ~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~ 252 (389)
..|.|. ++.+|+.|.. |.+|++.++ +.+..+.+|+++|.+++|+ +.+..|++++.|.+|++||+-... .+.+
T Consensus 443 vD~sGe-lV~AG~~d~F~IfvWS~qTG----qllDiLsGHEgPVs~l~f~-~~~~~LaS~SWDkTVRiW~if~s~~~vEt 516 (893)
T KOG0291|consen 443 VDPSGE-LVCAGAQDSFEIFVWSVQTG----QLLDILSGHEGPVSGLSFS-PDGSLLASGSWDKTVRIWDIFSSSGTVET 516 (893)
T ss_pred EcCCCC-EEEeeccceEEEEEEEeecC----eeeehhcCCCCcceeeEEc-cccCeEEeccccceEEEEEeeccCceeee
Confidence 999996 8888887764 999999977 5677788999999999999 788899999999999999986542 3334
Q ss_pred eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcccc---------CC-CeEEEec---cc
Q 016457 253 FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI---------GP-PEAVLVG---GH 319 (389)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~---------~~-~~~~~~~---~h 319 (389)
+. +...+..++|.|+|+ -|+.++.||.|.+||...+.+... ++ ....+.. ..
T Consensus 517 l~-------------i~sdvl~vsfrPdG~--elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~ 581 (893)
T KOG0291|consen 517 LE-------------IRSDVLAVSFRPDGK--ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK 581 (893)
T ss_pred Ee-------------eccceeEEEEcCCCC--eEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence 43 447799999999999 568888999999999987654100 00 0000000 01
Q ss_pred ceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 320 TAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 320 ~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
....+.+ +||+||.+|++||....|++|++.+.
T Consensus 582 ~K~Ftti---------~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 582 GKTFTTI---------CYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred CCceEEE---------EEcCCCCEEEecCCcccEEEEECchh
Confidence 1334444 99999999999999999999999987
No 27
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-40 Score=266.86 Aligned_cols=291 Identities=15% Similarity=0.233 Sum_probs=247.6
Q ss_pred eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc---eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457 34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG---QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109 (389)
Q Consensus 34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 109 (389)
.+.. .+.|.-+.|+++|++||+++.|.+..+|.+... +..+++.+|..+|..+.|+||. ++|++++.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd--ryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD--RYLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC--CeEEecCchHheeec
Confidence 3444 889999999999999999999999999987543 5578889999999999999999 799999999999999
Q ss_pred EccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457 110 DTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188 (389)
Q Consensus 110 d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 188 (389)
|+.+|.....+... ...+.+++|.|++..+++|+.|+.|..||+. +..+...+.-....|.+++..++|+ .+++.+.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk-~vl~v~~ 374 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGK-YVLLVTV 374 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCc-EEEEEec
Confidence 99999998877643 6789999999999999999999999999986 4445444422335699999999997 8888889
Q ss_pred CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCC
Q 016457 189 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDD 268 (389)
Q Consensus 189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (389)
|..|++|+..+.. -+.....+.+|++.+.+ .+++++++.-.+..+++||++..+.+..+.+++ .
T Consensus 375 d~~i~l~~~e~~~-----dr~lise~~~its~~iS-~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk----------q 438 (519)
T KOG0293|consen 375 DKKIRLYNREARV-----DRGLISEEQPITSFSIS-KDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK----------Q 438 (519)
T ss_pred ccceeeechhhhh-----hhccccccCceeEEEEc-CCCcEEEEEcccCeeEEeecchhhHHHHhhccc----------c
Confidence 9999999998432 12244567799999999 889999999999999999999999999999876 5
Q ss_pred CCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce-eEEEe
Q 016457 269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI-FGWTG 347 (389)
Q Consensus 269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~-~l~s~ 347 (389)
...+..-+|--..+. ++++|++|+.|+||+..++++ +..+. ||...|++| +|+|... ++|||
T Consensus 439 ~~fiIrSCFgg~~~~-fiaSGSED~kvyIWhr~sgkl------l~~Ls-GHs~~vNcV---------swNP~~p~m~ASa 501 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDK-FIASGSEDSKVYIWHRISGKL------LAVLS-GHSKTVNCV---------SWNPADPEMFASA 501 (519)
T ss_pred cceEEEeccCCCCcc-eEEecCCCceEEEEEccCCce------eEeec-CCcceeeEE---------ecCCCCHHHhhcc
Confidence 577888888765433 899999999999999999877 78886 999999999 7877654 58999
Q ss_pred cCCCeEEEEeccCC
Q 016457 348 GEDGRLCCWLSDDS 361 (389)
Q Consensus 348 ~~dg~v~iW~~~~~ 361 (389)
|+||+||||.....
T Consensus 502 sDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 502 SDDGTIRIWGPSDN 515 (519)
T ss_pred CCCCeEEEecCCcc
Confidence 99999999988753
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1e-40 Score=268.81 Aligned_cols=267 Identities=17% Similarity=0.203 Sum_probs=235.2
Q ss_pred CccccCCCCeEEEEecCcee-eee-ec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEE
Q 016457 13 KSQSCDNVNSIKRFGLKNSI-QTN-FG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISF 88 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~~~-~~~-~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~ 88 (389)
..-+++..|...+|+..... .++ +. +++|+++.|++++..+++|..+|.|++|+..- +.++.+++ |...|.+++|
T Consensus 110 RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlaf 188 (464)
T KOG0284|consen 110 RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAF 188 (464)
T ss_pred eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheecc
Confidence 45578888999999974321 122 22 89999999999999999999999999999764 44555555 5599999999
Q ss_pred eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457 89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (389)
+|+. ..+++++.||+|+|||....+....+.+|.-.|.+++|+|..+.++++|.|..|++||.++++++.++. .|+.
T Consensus 189 SpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKn 265 (464)
T KOG0284|consen 189 SPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKN 265 (464)
T ss_pred CCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-hccc
Confidence 9988 699999999999999999999989999999999999999999999999999999999999999999998 8999
Q ss_pred CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457 169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ 248 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 248 (389)
.|..+.|+|++ ++|++++.|..+++||+++ .+.+..+.+|...++++.|+|-...+|.+|+.||.|..|.+...+
T Consensus 266 tVl~~~f~~n~-N~Llt~skD~~~kv~DiR~----mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 266 TVLAVKFNPNG-NWLLTGSKDQSCKVFDIRT----MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred eEEEEEEcCCC-CeeEEccCCceEEEEehhH----hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence 99999999999 6999999999999999993 356778889999999999998888999999999999999987555
Q ss_pred eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457 249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN 301 (389)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 301 (389)
++..+... |...|++++|+|-|. +|++|+.|.++++|.-.
T Consensus 341 p~~~i~~A-----------Hd~~iwsl~~hPlGh--il~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 341 PLGEIPPA-----------HDGEIWSLAYHPLGH--ILATGSNDRTVRFWTRN 380 (464)
T ss_pred cccCCCcc-----------cccceeeeeccccce--eEeecCCCcceeeeccC
Confidence 55554432 889999999999998 89999999999999654
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.9e-40 Score=262.40 Aligned_cols=278 Identities=17% Similarity=0.260 Sum_probs=238.0
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
...|+|+.+.. ..+++|..|++|+|||.++.+++..+.||++.|.|+.|. . ..+++|+.|.+|++||+++++++
T Consensus 197 skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~--rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 197 SKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--E--RVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred CCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--c--eEEEecCCCceEEEEeccCCchh
Confidence 67899999854 579999999999999999999999999999999999996 3 59999999999999999999999
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce---eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ---VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT 194 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 194 (389)
.++-.|...|..+.|+ ++++++++.|.+|.+||+.+... ...+. +|...|+.+.|+.. ++++++.|.+|++
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd~k---yIVsASgDRTikv 344 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFDDK---YIVSASGDRTIKV 344 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccccc---eEEEecCCceEEE
Confidence 9999999999999995 78999999999999999987643 34455 89999999999763 9999999999999
Q ss_pred EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457 195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD 274 (389)
Q Consensus 195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (389)
|++.+. ..++.+.+|...|.++.+. +.++++|+.|.+|++||+..|.+++.+.+ |++-|.+
T Consensus 345 W~~st~----efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeG------------HEeLvRc 405 (499)
T KOG0281|consen 345 WSTSTC----EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEG------------HEELVRC 405 (499)
T ss_pred Eeccce----eeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhc------------hHHhhhh
Confidence 999965 6788888999999888874 67999999999999999999999999998 7789999
Q ss_pred ecccCCCCeEEEEEecCCceEEEEEeccCCcccc--C-CCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCC
Q 016457 275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI--G-PPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDG 351 (389)
Q Consensus 275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~--~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg 351 (389)
+.|.. + -|++|+.||+|+|||+..+..... + -++..+. .|++.|..+ .| |...+++++.|.
T Consensus 406 iRFd~--k--rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv-~hsgRVFrL---------QF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 406 IRFDN--K--RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV-EHSGRVFRL---------QF--DEFQIISSSHDD 469 (499)
T ss_pred eeecC--c--eeeeccccceEEEEecccccCCcccccchHHHhhh-hccceeEEE---------ee--cceEEEeccCCC
Confidence 99975 3 579999999999999987754110 0 1233333 577777777 33 445679999999
Q ss_pred eEEEEeccCCc
Q 016457 352 RLCCWLSDDSS 362 (389)
Q Consensus 352 ~v~iW~~~~~~ 362 (389)
+|.+||+.+..
T Consensus 470 tILiWdFl~~~ 480 (499)
T KOG0281|consen 470 TILIWDFLNGP 480 (499)
T ss_pred eEEEEEcCCCC
Confidence 99999998763
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.1e-37 Score=295.76 Aligned_cols=307 Identities=13% Similarity=0.155 Sum_probs=242.4
Q ss_pred CCeEEEEecCceee--e-----eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc----e----eeeeecCCCCcE
Q 016457 20 VNSIKRFGLKNSIQ--T-----NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG----Q----YSGECKGHSSTV 83 (389)
Q Consensus 20 ~~~i~~w~~~~~~~--~-----~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~----~----~~~~~~~~~~~v 83 (389)
+|..++|+...... . +.. .+.|.+++|+|++++||+|+.|+.|+||+.... . +...+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 45577777653211 1 222 678999999999999999999999999997532 1 122233 35679
Q ss_pred EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeC-CCCeEEEeecCCeEEEEECcCCceeeee
Q 016457 84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGG-STDYLLAAGCGSQIQFWDWRNKKQVACL 162 (389)
Q Consensus 84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 162 (389)
.+++|++... .+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++..|++++.|+.|++||++++..+..+
T Consensus 536 ~~l~~~~~~~-~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIK-SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCC-CEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 9999988542 6999999999999999999999999999999999999997 5677888888999999999999888888
Q ss_pred eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457 163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIW 242 (389)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~ 242 (389)
. +...+.++.|++.....|++|+.||.|++||++... ..+..+.+|...|..+.|. ++.+|++++.|++|++|
T Consensus 615 ~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 615 K--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLW 687 (793)
T ss_pred e--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---ccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEE
Confidence 7 446799999965433599999999999999998532 2455667899999999996 45689999999999999
Q ss_pred EcCCC------ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcccc-----CCC
Q 016457 243 DWKDG------QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI-----GPP 311 (389)
Q Consensus 243 d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~-----~~~ 311 (389)
|+..+ ..+..+.+ |...+..++|+++++ +|++|+.||.|++|+......... ...
T Consensus 688 d~~~~~~~~~~~~l~~~~g------------h~~~i~~v~~s~~~~--~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~ 753 (793)
T PLN00181 688 DLSMSISGINETPLHSFMG------------HTNVKNFVGLSVSDG--YIATGSETNEVFVYHKAFPMPVLSYKFKTIDP 753 (793)
T ss_pred eCCCCccccCCcceEEEcC------------CCCCeeEEEEcCCCC--EEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence 99743 45666665 668889999999998 999999999999999765432000 000
Q ss_pred eEE-EecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457 312 EAV-LVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS 358 (389)
Q Consensus 312 ~~~-~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~ 358 (389)
+.. ....|...|.++ +|++++.+|++|+.||.|++|++
T Consensus 754 ~~~~~~~~~~~~V~~v---------~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 754 VSGLEVDDASQFISSV---------CWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccccccCCCCcEEEEE---------EEcCCCCeEEEecCCCcEEEEec
Confidence 000 012355678888 99999999999999999999986
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-39 Score=277.77 Aligned_cols=307 Identities=17% Similarity=0.240 Sum_probs=263.1
Q ss_pred cccCCCCeEEEEecC--ceeeeeec-CcceEEEeec-CCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeC
Q 016457 15 QSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPK-NDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSG 90 (389)
Q Consensus 15 ~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~-~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~ 90 (389)
.....++++.++|.. +..+.+.| ++.|.+|.|- |+.++||+++..+.+++|+..+..+. .+.||++.|.++....
T Consensus 297 l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~ 375 (775)
T KOG0319|consen 297 LLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWS 375 (775)
T ss_pred EEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecc
Confidence 345567888999665 46677788 9999999975 67789999999999999998876555 7899999999999554
Q ss_pred CCCCCEEEEEecCCeEEEEEccCC----eEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCce-----ee
Q 016457 91 PSTPHVLHSCSSDGTIRAWDTRSF----HEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQ-----VA 160 (389)
Q Consensus 91 ~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~-----~~ 160 (389)
.| .+|+||+.|+++++|.++++ -++....+|...|.+++++..+.. +++++.|+++++|++...+. +.
T Consensus 376 ~g--~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 376 SG--DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred cC--cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence 66 69999999999999988443 345667889999999999865544 55566699999999986221 11
Q ss_pred ----eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC
Q 016457 161 ----CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI 236 (389)
Q Consensus 161 ----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 236 (389)
+. ..|...|+|++++|+++ +++||+.|.+.+||++. .......+.+|...|.++.|+ +..+.+++++.|
T Consensus 454 ~~~~t~-~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs-~~dq~laT~SgD 526 (775)
T KOG0319|consen 454 TCRYTE-RAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFS-KNDQLLATCSGD 526 (775)
T ss_pred hhhHHH-HhhcccccceEecCCCc-eEEecccccceeeeccc----CceEEEEeeCCccceEEEEec-cccceeEeccCC
Confidence 12 37999999999999996 99999999999999999 346677889999999999999 677899999999
Q ss_pred CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe
Q 016457 237 ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV 316 (389)
Q Consensus 237 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~ 316 (389)
++|+||.+.++.++++|.+ |...|..+.|-.+|. .|++++.||.|++|++.++.+ +..+.
T Consensus 527 ~TvKIW~is~fSClkT~eG------------H~~aVlra~F~~~~~--qliS~~adGliKlWnikt~eC------~~tlD 586 (775)
T KOG0319|consen 527 KTVKIWSISTFSCLKTFEG------------HTSAVLRASFIRNGK--QLISAGADGLIKLWNIKTNEC------EMTLD 586 (775)
T ss_pred ceEEEEEeccceeeeeecC------------ccceeEeeeeeeCCc--EEEeccCCCcEEEEeccchhh------hhhhh
Confidence 9999999999999999998 779999999999999 789999999999999999887 67775
Q ss_pred cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 317 GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 317 ~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
+|.+.|+++ +.++...+++||+.||.|.+|.=.+.
T Consensus 587 -~H~DrvWaL---------~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 587 -AHNDRVWAL---------SVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred -hccceeEEE---------eecCccceeEecCCCeEEEEeecCcH
Confidence 999999999 88999999999999999999986554
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-39 Score=271.48 Aligned_cols=279 Identities=20% Similarity=0.222 Sum_probs=245.4
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
.+.|.++.|+|....++++-.+|.|.|||.++...++.+.....+|.+..|-+.. +.+++|+.|..|++|+..+++.+
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk--nWiv~GsDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK--NWIVTGSDDMQIRVFNYNTGEKV 90 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc--ceEEEecCCceEEEEecccceee
Confidence 7889999999999999999999999999999999999999999999999999888 79999999999999999999999
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC-ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK-KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 196 (389)
..|..|.+.|.|++.+|..+++++++.|-.|++||.+.. .+.+++. +|...|.+++|+|.+.+.+++++-|++|++|.
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence 999999999999999999999999999999999999865 5667777 99999999999999999999999999999999
Q ss_pred cCCCCCCCccceeeeccCCceeeEEEecC-CCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeee
Q 016457 197 TGGDINDDDLLESVINVGTSVGKVGFFGE-TNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDC 275 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (389)
+. ...+..++.+|...|+++.+.+. +..+|++|+.|.+|+|||..+..|++++.+ |...|..+
T Consensus 170 lg----s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG------------Ht~Nvs~v 233 (794)
T KOG0276|consen 170 LG----SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG------------HTNNVSFV 233 (794)
T ss_pred cC----CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc------------ccccceEE
Confidence 98 44677888899999999999842 345999999999999999999999999998 77999999
Q ss_pred cccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeE
Q 016457 276 HYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRL 353 (389)
Q Consensus 276 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v 353 (389)
.|+|.-. ++++|++||+++||+..+.++ ...+. -.-+.|.++ +-.+.+..++.|.+.|.|
T Consensus 234 ~fhp~lp--iiisgsEDGTvriWhs~Ty~l------E~tLn-~gleRvW~I---------~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 234 FFHPELP--IIISGSEDGTVRIWNSKTYKL------EKTLN-YGLERVWCI---------AAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred EecCCCc--EEEEecCCccEEEecCcceeh------hhhhh-cCCceEEEE---------eecCCCCeEEEeccCCcE
Confidence 9999888 899999999999999988765 22222 334667777 333333444555544444
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=268.60 Aligned_cols=287 Identities=14% Similarity=0.179 Sum_probs=253.5
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC-CeEEEEEccCCeE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD-GTIRAWDTRSFHE 116 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~ 116 (389)
...|++.+|++.-+.|++|-..|...+|.+....+++.+.-...+|..++|+..| +.|+.|+.. |.+-||+..+...
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG--DWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG--DWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC--CEEEEcCCccceEEEEEeeccce
Confidence 4789999999999999999999999999999999999998878899999999888 799988765 8999999999999
Q ss_pred EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196 (389)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 196 (389)
+...++|-..+++++++|++..+++|+.||.|++||..++-+..++. .|...|+.+.|+..+. .+++++-||+|+.||
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~-~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGN-VLLSSSLDGTVRAWD 420 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEecCC-EEEEeecCCeEEeee
Confidence 99999999999999999999999999999999999999999999999 8999999999999994 999999999999999
Q ss_pred cCCCCCCCccceeeecc-CCceeeEEEecCCCcEEEEEecCC-cEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457 197 TGGDINDDDLLESVINV-GTSVGKVGFFGETNKHLWCLTHIE-TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD 274 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (389)
+... ...+.+... .....+++.. +.|.++++|+.|. .|.+|++.+|+.+-.+.+ |+++|.+
T Consensus 421 lkRY----rNfRTft~P~p~QfscvavD-~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG------------HEgPVs~ 483 (893)
T KOG0291|consen 421 LKRY----RNFRTFTSPEPIQFSCVAVD-PSGELVCAGAQDSFEIFVWSVQTGQLLDILSG------------HEGPVSG 483 (893)
T ss_pred eccc----ceeeeecCCCceeeeEEEEc-CCCCEEEeeccceEEEEEEEeecCeeeehhcC------------CCCccee
Confidence 9843 334444322 2345677777 6788888998887 899999999999999998 8899999
Q ss_pred ecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEE
Q 016457 275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLC 354 (389)
Q Consensus 275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~ 354 (389)
++|+|.++ .|++|+.|.+|++|++-.... .+..+ .+...|..+ +|+|||+-|++++.||.|.
T Consensus 484 l~f~~~~~--~LaS~SWDkTVRiW~if~s~~-----~vEtl--~i~sdvl~v---------sfrPdG~elaVaTldgqIt 545 (893)
T KOG0291|consen 484 LSFSPDGS--LLASGSWDKTVRIWDIFSSSG-----TVETL--EIRSDVLAV---------SFRPDGKELAVATLDGQIT 545 (893)
T ss_pred eEEccccC--eEEeccccceEEEEEeeccCc-----eeeeE--eeccceeEE---------EEcCCCCeEEEEEecceEE
Confidence 99999999 899999999999999976532 02344 366778888 9999999999999999999
Q ss_pred EEeccCCcc
Q 016457 355 CWLSDDSSE 363 (389)
Q Consensus 355 iW~~~~~~~ 363 (389)
+||++...+
T Consensus 546 f~d~~~~~q 554 (893)
T KOG0291|consen 546 FFDIKEAVQ 554 (893)
T ss_pred EEEhhhcee
Confidence 999998733
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-39 Score=255.22 Aligned_cols=267 Identities=21% Similarity=0.244 Sum_probs=244.2
Q ss_pred CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCC-ceeeeeecCCCCcEEEEE
Q 016457 12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT-GQYSGECKGHSSTVNQIS 87 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~ 87 (389)
+..++++.|++|++||.. +....++| .++|.+++|+..|++|++++.|-.+++||.++ .++++.+.+|...|.+++
T Consensus 121 ~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~ 200 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVF 200 (406)
T ss_pred eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEE
Confidence 456788899999999985 57778888 78899999999999999999999999999986 567788889999999999
Q ss_pred EeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeeccc
Q 016457 88 FSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHV 167 (389)
Q Consensus 88 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (389)
|-|.+ +++++++.|.+|+.|++.++.++.++.+|..-|..++.+.++..+++++.|.+|++|-+.++++...+. .|.
T Consensus 201 f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hE 277 (406)
T KOG0295|consen 201 FLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHE 277 (406)
T ss_pred EEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-ccc
Confidence 99999 899999999999999999999999999999999999999777777777779999999999999988888 899
Q ss_pred CCeeEEEEecCC--------------CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE
Q 016457 168 EDVTQVHFVPNN--------------QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL 233 (389)
Q Consensus 168 ~~v~~~~~~~~~--------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 233 (389)
.+|.|++|-|.. ..++.+++.|++|++||+.++ .++..+.+|...|..++|+ |.|++|+++
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~-p~Gkyi~Sc 352 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFS-PGGKYILSC 352 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEc-CCCeEEEEE
Confidence 999999998752 138999999999999999966 6888999999999999999 889999999
Q ss_pred ecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457 234 THIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV 300 (389)
Q Consensus 234 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 300 (389)
..|+++++||++++++.+.+.. |+.-++++.|+.+.. |+++|+-|..+++|.-
T Consensus 353 aDDktlrvwdl~~~~cmk~~~a------------h~hfvt~lDfh~~~p--~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 353 ADDKTLRVWDLKNLQCMKTLEA------------HEHFVTSLDFHKTAP--YVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecCCcEEEEEeccceeeeccCC------------CcceeEEEecCCCCc--eEEeccccceeeeeec
Confidence 9999999999999999999986 778999999999888 9999999999999964
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-37 Score=256.33 Aligned_cols=333 Identities=17% Similarity=0.209 Sum_probs=264.9
Q ss_pred CccccCCCCeEEEEecCceee----eeec-CcceEEEeecCCCCeEEEEec--CCeEEEEeCCCceeeeeecCCCCcEEE
Q 016457 13 KSQSCDNVNSIKRFGLKNSIQ----TNFG-DDYVFEIVPKNDWSLMAVSLS--TNVVKLYSPVTGQYSGECKGHSSTVNQ 85 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~~~~----~~~~-~~~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~v~~ 85 (389)
..|++...|.||+|+..+.-. +++. .++|..++|+.|+++|++.+. ++..+++-.++|..+..+.||...|++
T Consensus 73 yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins 152 (603)
T KOG0318|consen 73 YIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINS 152 (603)
T ss_pred EEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEee
Confidence 577888889999999864222 2233 889999999999998888775 223444444478889999999999999
Q ss_pred EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--
Q 016457 86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-- 163 (389)
Q Consensus 86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-- 163 (389)
+.|-|.. |-.++||+.|++|.+|+-.-.+...+++.|..-|.|+.|+|++..+++++.||+|.+||-.+++.+..+.
T Consensus 153 ~~~KpsR-PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~ 231 (603)
T KOG0318|consen 153 VDFKPSR-PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDS 231 (603)
T ss_pred eeccCCC-ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCC
Confidence 9999876 4789999999999999977778888889999999999999999999999999999999999999998886
Q ss_pred ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC---------------------------------------CC
Q 016457 164 ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN---------------------------------------DD 204 (389)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------------------------------------~~ 204 (389)
.+|.+.|.+++|+|++. .+++++.|.+++|||..+... ..
T Consensus 232 ~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 232 DAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred CCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence 47999999999999996 999999999999999975420 11
Q ss_pred ccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEE-----------eeccc----------------
Q 016457 205 DLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVAS-----------FENAR---------------- 257 (389)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------~~~~~---------------- 257 (389)
..+..+.+|...|+++..+ +++++|++++.||.|.-|+..++..-+. +....
T Consensus 311 ~~~~~i~GHnK~ITaLtv~-~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~ 389 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVS-PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI 389 (603)
T ss_pred ChhheecccccceeEEEEc-CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence 2445567888999999999 7779999999999999999876532211 10000
Q ss_pred -------------ccccCC-----------------------------ccCCCCCceeeecccCCCCeEEEEEecCCceE
Q 016457 258 -------------SLASDS-----------------------------WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV 295 (389)
Q Consensus 258 -------------~~~~~~-----------------------------~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i 295 (389)
.+..+. ...+-.-...+++++|+++ .++.|+.||.|
T Consensus 390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~--~vaVGG~Dgkv 467 (603)
T KOG0318|consen 390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS--EVAVGGQDGKV 467 (603)
T ss_pred ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC--EEEEecccceE
Confidence 000000 0000122346788999999 88999999999
Q ss_pred EEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCccc
Q 016457 296 GYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEI 364 (389)
Q Consensus 296 ~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~~ 364 (389)
+||.+..... .....+. .|..+|+++ +||||+.|||+|...+.|-+|++......
T Consensus 468 hvysl~g~~l----~ee~~~~-~h~a~iT~v---------aySpd~~yla~~Da~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 468 HVYSLSGDEL----KEEAKLL-EHRAAITDV---------AYSPDGAYLAAGDASRKVVLYDVASREVK 522 (603)
T ss_pred EEEEecCCcc----cceeeee-cccCCceEE---------EECCCCcEEEEeccCCcEEEEEcccCcee
Confidence 9999988664 1123333 799999999 99999999999999999999999987553
No 36
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-39 Score=254.37 Aligned_cols=284 Identities=21% Similarity=0.296 Sum_probs=252.4
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee--------cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC--------KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~--------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 109 (389)
++.+-|..|+|||++|++|+.||.|.+||..+|+..+.+ .-+..+|.|+.|+.+. ..|++|+.||.|++|
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs--EMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS--EMLASGSQDGKIKVW 290 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH--HHhhccCcCCcEEEE
Confidence 778889999999999999999999999999999766543 3478899999999998 799999999999999
Q ss_pred EccCCeEEEEEE-cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457 110 DTRSFHEVWSVT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188 (389)
Q Consensus 110 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 188 (389)
.+.+|.+++.|. .|...|+|+.|+.++..+++++.|.++++.-+++|+++..+. +|.+.|+...|.++| +.+++++.
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG-~~iisaSs 368 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDG-HHIISASS 368 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCC-CeEEEecC
Confidence 999999999997 789999999999999999999999999999999999999999 999999999999999 49999999
Q ss_pred CCcEEEEecCCCCCCCccceeee--ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccC
Q 016457 189 DGLICTFDTGGDINDDDLLESVI--NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTL 266 (389)
Q Consensus 189 d~~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 266 (389)
||+|++|+..+. .++..+. +...+|.++...|.+...++++...++++|-++. |+.++++...+.
T Consensus 369 DgtvkvW~~Ktt----eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR-------- 435 (508)
T KOG0275|consen 369 DGTVKVWHGKTT----ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR-------- 435 (508)
T ss_pred CccEEEecCcch----hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc--------
Confidence 999999999965 3343333 3456889999998888899999999999999985 788888875542
Q ss_pred CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEE
Q 016457 267 DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWT 346 (389)
Q Consensus 267 ~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s 346 (389)
..+...+++.+|.|. |+.+.++|+.++.|.+.++++ ...+. .|...|..+ +-+|..+.||+
T Consensus 436 -EgGdFi~~~lSpkGe--wiYcigED~vlYCF~~~sG~L------E~tl~-VhEkdvIGl---------~HHPHqNllAs 496 (508)
T KOG0275|consen 436 -EGGDFINAILSPKGE--WIYCIGEDGVLYCFSVLSGKL------ERTLP-VHEKDVIGL---------THHPHQNLLAS 496 (508)
T ss_pred -cCCceEEEEecCCCc--EEEEEccCcEEEEEEeecCce------eeeee-ccccccccc---------ccCcccchhhh
Confidence 346778889999999 999999999999999999887 45565 888888888 77888888899
Q ss_pred ecCCCeEEEEe
Q 016457 347 GGEDGRLCCWL 357 (389)
Q Consensus 347 ~~~dg~v~iW~ 357 (389)
-++||.+++|+
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999996
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-37 Score=233.94 Aligned_cols=252 Identities=15% Similarity=0.237 Sum_probs=223.9
Q ss_pred eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEE
Q 016457 72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFW 151 (389)
Q Consensus 72 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 151 (389)
....+..+.++|.++.|+-+| ++.++++.|.+|++|++..+.+++++.+|..+|..++.+.++..++++|.|..|.+|
T Consensus 9 r~~~l~~~qgaV~avryN~dG--nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDG--NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred hceeecccccceEEEEEccCC--CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 345677899999999999999 799999999999999999999999999999999999999899999999999999999
Q ss_pred ECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEE
Q 016457 152 DWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLW 231 (389)
Q Consensus 152 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 231 (389)
|+.+++.++.+. +|...|+.++|+.+.. .+++|+.|..+++||.++. ..++++.+......|.++... +..++
T Consensus 87 DV~TGkv~Rr~r-gH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~--s~ePiQildea~D~V~Si~v~---~heIv 159 (307)
T KOG0316|consen 87 DVNTGKVDRRFR-GHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSR--SFEPIQILDEAKDGVSSIDVA---EHEIV 159 (307)
T ss_pred EcccCeeeeecc-cccceeeEEEecCcce-EEEeccccceeEEEEcccC--CCCccchhhhhcCceeEEEec---ccEEE
Confidence 999999999999 9999999999999985 9999999999999999965 456666666777889999886 34799
Q ss_pred EEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCC
Q 016457 232 CLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPP 311 (389)
Q Consensus 232 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~ 311 (389)
+|+.||+++.||++.|+....+.+ .+|++++|+++++ .+++++.|+++++.|-+++++
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy~g--------------~pit~vs~s~d~n--c~La~~l~stlrLlDk~tGkl------ 217 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDYFG--------------HPITSVSFSKDGN--CSLASSLDSTLRLLDKETGKL------ 217 (307)
T ss_pred eeccCCcEEEEEeecceeehhhcC--------------CcceeEEecCCCC--EEEEeeccceeeecccchhHH------
Confidence 999999999999999988877766 7899999999999 889999999999999999987
Q ss_pred eEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457 312 EAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS 362 (389)
Q Consensus 312 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~ 362 (389)
+.... ||...-..+ .++++.....+++|++||.|.+|++.+..
T Consensus 218 L~sYk-Ghkn~eykl-------dc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 218 LKSYK-GHKNMEYKL-------DCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred HHHhc-ccccceeee-------eeeecccceeEEeccCCceEEEEEeccce
Confidence 56665 887544444 11677777889999999999999998773
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-37 Score=234.82 Aligned_cols=292 Identities=16% Similarity=0.188 Sum_probs=244.4
Q ss_pred eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC
Q 016457 35 NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS 113 (389)
Q Consensus 35 ~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 113 (389)
++| ..+++.+.|+.+|.+|.+++.|.++.+|-..+|+.+.++.||++.|+++....+. ..+++|+.|.++++||+.+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s--~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS--KHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc--ceeeeccccceeEEEEcCC
Confidence 445 7889999999999999999999999999988999999999999999999998877 7999999999999999999
Q ss_pred CeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-----CCeEEEEECc-------CCceeeeeeecccCCeeEEEEecCCCC
Q 016457 114 FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWR-------NKKQVACLEESHVEDVTQVHFVPNNQN 181 (389)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 181 (389)
|+++.+++. ..+|..+.|++.++.++++.. .+.|.++|++ ..++...+. .+.+.++.+.|.|.++
T Consensus 84 Gk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~l~~- 160 (327)
T KOG0643|consen 84 GKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGPLGE- 160 (327)
T ss_pred CcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecccCC-
Confidence 999999997 589999999988888877765 4789999998 445677777 6789999999999996
Q ss_pred eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccccc
Q 016457 182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLAS 261 (389)
Q Consensus 182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 261 (389)
.|++|..||.|.+||++++. ..+.....|...|+.++++ ++..++++++.|.+-++||..+.+++++|..
T Consensus 161 ~ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t------ 230 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKTYTT------ 230 (327)
T ss_pred EEEEecCCCcEEEEEcccCc---eeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEEeee------
Confidence 99999999999999999764 4455566788999999999 7889999999999999999999999999984
Q ss_pred CCccCCCCCceeeecccCCCCeEEEEEecCCce--EEEEEeccCCcc------ccCCCeEEEecccceeeeeccCCCccc
Q 016457 262 DSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT--VGYFPVNYGGAA------TIGPPEAVLVGGHTAVVRSVLPMPSVQ 333 (389)
Q Consensus 262 ~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~--i~i~~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~ 333 (389)
..++++.+++|..+ +++.|+.... |.--+.+.++.. ...+.+..+. +|-++|+++
T Consensus 231 -------e~PvN~aaisP~~d--~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk-GHFGPINsv------- 293 (327)
T KOG0643|consen 231 -------ERPVNTAAISPLLD--HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK-GHFGPINSV------- 293 (327)
T ss_pred -------cccccceecccccc--eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc-ccccCccee-------
Confidence 47899999999877 5555443221 211122222110 0111234554 999999999
Q ss_pred CCCCCCCceeEEEecCCCeEEEEeccC
Q 016457 334 GRPAQSHGIFGWTGGEDGRLCCWLSDD 360 (389)
Q Consensus 334 ~~~~s~~~~~l~s~~~dg~v~iW~~~~ 360 (389)
+|+|+|+-.+|||+||.||+..++.
T Consensus 294 --AfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 294 --AFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred --EECCCCcccccCCCCceEEEEEecc
Confidence 9999999999999999999997764
No 39
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.6e-39 Score=254.76 Aligned_cols=308 Identities=18% Similarity=0.276 Sum_probs=251.7
Q ss_pred eeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457 34 TNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111 (389)
Q Consensus 34 ~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~ 111 (389)
.+.| .++|.|++=+|.. ..+|+|+.||.|+|||+.+.++...+.+|.+.|..|++.. + .+++++.|++|+.|.+
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQWKI 136 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-c---ceEEecCCcceeeeec
Confidence 4556 8999999999987 7899999999999999999999999999999999999986 3 6899999999999998
Q ss_pred cCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457 112 RSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL 191 (389)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 191 (389)
.- .+++++.+ +..+..+.-+..+..++++| ..|.|||.....++.++. -....|.++.|+|...++|++++.|+.
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~sms-wG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMS-WGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred cC-Ccceeeec-cccccccccccccccccccC--ceeeecccccCCccceee-cCCCceeEEecCCCcchheeeeccCCc
Confidence 74 57777776 57888888775556666665 489999999999999998 456779999999999889999999999
Q ss_pred EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCC
Q 016457 192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVD 270 (389)
Q Consensus 192 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 270 (389)
|.+||++...+..+.+ ....-+.++|+| +...+++++.|..++.||++.. .++..+.+ |..
T Consensus 212 IvLyD~R~~~Pl~KVi-----~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~d------------hvs 273 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVI-----LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKD------------HVS 273 (433)
T ss_pred eEEEecccCCccceee-----eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcc------------cce
Confidence 9999999654322222 234567899995 7778999999999999999875 34555555 889
Q ss_pred ceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc---eeeeeccCCCcccCCCCCCCceeEEEe
Q 016457 271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT---AVVRSVLPMPSVQGRPAQSHGIFGWTG 347 (389)
Q Consensus 271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~s~~~~~l~s~ 347 (389)
.|.++.|+|.|+ -+++||.|.+|+||.+..+.- ..+. |+ ..|.+| .||.|.+|++||
T Consensus 274 AV~dVdfsptG~--EfvsgsyDksIRIf~~~~~~S-------RdiY--htkRMq~V~~V---------k~S~Dskyi~SG 333 (433)
T KOG0268|consen 274 AVMDVDFSPTGQ--EFVSGSYDKSIRIFPVNHGHS-------RDIY--HTKRMQHVFCV---------KYSMDSKYIISG 333 (433)
T ss_pred eEEEeccCCCcc--hhccccccceEEEeecCCCcc-------hhhh--hHhhhheeeEE---------EEeccccEEEec
Confidence 999999999999 559999999999999987654 2222 33 466777 999999999999
Q ss_pred cCCCeEEEEeccCC--------cccchhhhhhHHhhcCc-----ccccccCCCC
Q 016457 348 GEDGRLCCWLSDDS--------SEINRSWISNAMVMRSP-----KTHKKNRHNP 388 (389)
Q Consensus 348 ~~dg~v~iW~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 388 (389)
|+|+.||+|+..++ .|.....+.+.+..+++ +++-++|+.|
T Consensus 334 Sdd~nvRlWka~Aseklgv~t~rEk~~~~Y~e~Lke~y~~~peIkRIarHR~lP 387 (433)
T KOG0268|consen 334 SDDGNVRLWKAKASEKLGVITPREKNKLEYNEALKERYKHLPEIKRIARHRHLP 387 (433)
T ss_pred CCCcceeeeecchhhhcCCCChhHHHHHHHHHHHHHHHhhcHHHHHHHhhccCC
Confidence 99999999999877 44455556667766663 5666777776
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=231.85 Aligned_cols=268 Identities=15% Similarity=0.186 Sum_probs=220.2
Q ss_pred CccccCCCCeEEEEecCc-----eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc--eeeeeecCCCCcE
Q 016457 13 KSQSCDNVNSIKRFGLKN-----SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG--QYSGECKGHSSTV 83 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~-----~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v 83 (389)
..|||+.|..|++|+... +...+.. +..|++++|+|.|++||+|+.|.++.||.-..+ +++..+.||...|
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEV 108 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEV 108 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccce
Confidence 479999999999999873 3333333 789999999999999999999999999986544 6788999999999
Q ss_pred EEEEEeCCCCCCEEEEEecCCeEEEEEccCC---eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc---CCc
Q 016457 84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR---NKK 157 (389)
Q Consensus 84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~ 157 (389)
.+++|+++| .+||+++.|+.|-||.+..+ ++...++.|...|..+.|+|....|++++.|++|++|+-. .-.
T Consensus 109 K~Vaws~sG--~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~ 186 (312)
T KOG0645|consen 109 KCVAWSASG--NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWE 186 (312)
T ss_pred eEEEEcCCC--CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCee
Confidence 999999999 79999999999999998743 5778899999999999999999999999999999999866 336
Q ss_pred eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC
Q 016457 158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE 237 (389)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 237 (389)
+++++. +|...|.+++|++.|. .|++++.|++++||-..+. + ...|...+..++|. ...|++++.|+
T Consensus 187 c~~tl~-g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~------~--~~~~sr~~Y~v~W~---~~~IaS~ggD~ 253 (312)
T KOG0645|consen 187 CVQTLD-GHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTD------L--SGMHSRALYDVPWD---NGVIASGGGDD 253 (312)
T ss_pred EEEEec-CccceEEEEEecCCCc-eEEEecCCcceEeeeeccC------c--chhcccceEeeeec---ccceEeccCCC
Confidence 788898 8999999999999995 9999999999999987632 1 12366788999997 33899999999
Q ss_pred cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457 238 TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN 301 (389)
Q Consensus 238 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 301 (389)
.|++|.-...-.-..+...... ...|...|+++.|.|.... .|++|+.||.|++|.+.
T Consensus 254 ~i~lf~~s~~~d~p~~~l~~~~-----~~aHe~dVNsV~w~p~~~~-~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 254 AIRLFKESDSPDEPSWNLLAKK-----EGAHEVDVNSVQWNPKVSN-RLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEEEEecCCCCCchHHHHHhh-----hcccccccceEEEcCCCCC-ceeecCCCceEEEEEec
Confidence 9999986532111111100000 0118889999999995333 68999999999999875
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.4e-38 Score=238.71 Aligned_cols=283 Identities=17% Similarity=0.238 Sum_probs=249.0
Q ss_pred CcceEEEeecC---CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457 38 DDYVFEIVPKN---DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF 114 (389)
Q Consensus 38 ~~~v~~~~~~~---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 114 (389)
..+|..++|+| +|-+|++++.|+.-.+-+-++|.-+.+|.+|.+.|+....+.+. ...++++.|-+-++||.-+|
T Consensus 14 trpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na--~~aasaaadftakvw~a~tg 91 (334)
T KOG0278|consen 14 TRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNA--TRAASAAADFTAKVWDAVTG 91 (334)
T ss_pred CcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchh--hhhhhhcccchhhhhhhhhh
Confidence 78899999975 88899999999999999999999999999999999999998777 68899999999999999999
Q ss_pred eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEE
Q 016457 115 HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193 (389)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 193 (389)
..+.+|+ |+..|..++|+.+.++|++++.+..+++||++..+ +...+. +|.+.|..+.|..... .|++++.|++|+
T Consensus 92 delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~eD~-~iLSSadd~tVR 168 (334)
T KOG0278|consen 92 DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCHEDK-CILSSADDKTVR 168 (334)
T ss_pred hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEeccCc-eEEeeccCCceE
Confidence 9999987 67999999999999999999999999999998754 566777 8999999999998885 899999999999
Q ss_pred EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457 194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV 273 (389)
Q Consensus 194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (389)
+||.+++. .......+.+|+++.++ +++.+ ++....+.|.+||..+...++.+.. ...|.
T Consensus 169 LWD~rTgt-----~v~sL~~~s~VtSlEvs-~dG~i-lTia~gssV~Fwdaksf~~lKs~k~-------------P~nV~ 228 (334)
T KOG0278|consen 169 LWDHRTGT-----EVQSLEFNSPVTSLEVS-QDGRI-LTIAYGSSVKFWDAKSFGLLKSYKM-------------PCNVE 228 (334)
T ss_pred EEEeccCc-----EEEEEecCCCCcceeec-cCCCE-EEEecCceeEEeccccccceeeccC-------------ccccc
Confidence 99999764 33344467899999999 67764 5555678899999999999988874 36788
Q ss_pred eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeE
Q 016457 274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRL 353 (389)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v 353 (389)
+..++|+.. ++++|++|+.++.||..++.. +.....+|-++|.+| .|+|||...++||+||+|
T Consensus 229 SASL~P~k~--~fVaGged~~~~kfDy~TgeE------i~~~nkgh~gpVhcV---------rFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 229 SASLHPKKE--FFVAGGEDFKVYKFDYNTGEE------IGSYNKGHFGPVHCV---------RFSPDGELYASGSEDGTI 291 (334)
T ss_pred cccccCCCc--eEEecCcceEEEEEeccCCce------eeecccCCCCceEEE---------EECCCCceeeccCCCceE
Confidence 889999887 789999999999999999886 444446999999999 999999999999999999
Q ss_pred EEEeccCCc
Q 016457 354 CCWLSDDSS 362 (389)
Q Consensus 354 ~iW~~~~~~ 362 (389)
|+|......
T Consensus 292 rlWQt~~~~ 300 (334)
T KOG0278|consen 292 RLWQTTPGK 300 (334)
T ss_pred EEEEecCCC
Confidence 999998763
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.5e-37 Score=244.02 Aligned_cols=273 Identities=18% Similarity=0.245 Sum_probs=239.4
Q ss_pred CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457 13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS 89 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~ 89 (389)
-.++++.|++|++||+. +...++.| ...|..+++++-..++++++.|+.|+.||++..+.+..+.||-..|.|++.+
T Consensus 165 wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh 244 (460)
T KOG0285|consen 165 WFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH 244 (460)
T ss_pred eEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecc
Confidence 46899999999999985 56667777 8899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCC
Q 016457 90 GPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED 169 (389)
Q Consensus 90 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (389)
|.- +.|++|+.|.++++||+++...+..+.+|..+|..+.+.|.++.+++++.|++|++||++.++.+.++. .|...
T Consensus 245 PTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkks 321 (460)
T KOG0285|consen 245 PTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKS 321 (460)
T ss_pred ccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee-cccce
Confidence 988 799999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457 170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN 249 (389)
Q Consensus 170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 249 (389)
+.+++.+|.. +.|++++.| .|+-|++..+ ..+..+.+|..-|.+++.+ .+ .++++|+.+|.|.+||.+++-.
T Consensus 322 vral~lhP~e-~~fASas~d-nik~w~~p~g----~f~~nlsgh~~iintl~~n-sD-~v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 322 VRALCLHPKE-NLFASASPD-NIKQWKLPEG----EFLQNLSGHNAIINTLSVN-SD-GVLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred eeEEecCCch-hhhhccCCc-cceeccCCcc----chhhccccccceeeeeeec-cC-ceEEEcCCceEEEEEecCcCcc
Confidence 9999999998 589999877 5899999844 4566677888999999987 33 4899999999999999999876
Q ss_pred eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
.+......... ....+..|...+|...|. -|++|..|.+|++|.-+.
T Consensus 394 yQ~~~t~vqpG----Sl~sEagI~as~fDktg~--rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 394 YQRGQTIVQPG----SLESEAGIFASCFDKTGS--RLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccccccccCC----ccccccceeEEeecccCc--eEEeccCCcceEEEeccc
Confidence 65543221111 112457789999999888 679999999999997654
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7e-37 Score=237.46 Aligned_cols=271 Identities=16% Similarity=0.223 Sum_probs=239.3
Q ss_pred CCCCccccCCCCeEEEEecC---ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE
Q 016457 10 SQPKSQSCDNVNSIKRFGLK---NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ 85 (389)
Q Consensus 10 ~~~~~~s~~~~~~i~~w~~~---~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~ 85 (389)
+-+..||++.|..|.+|+.- +..-.+.+ .++|..+.|.+|++.|++++.|.+|+.||+++|+....+++|.+.|++
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs 137 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNS 137 (338)
T ss_pred CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeee
Confidence 55678999999999999964 34556667 999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec
Q 016457 86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165 (389)
Q Consensus 86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 165 (389)
+.-+.-+ +.++.|++.|+++++||+++...++++.. +.+++++.|...+..+++++-|+.|++||++.+.....+. +
T Consensus 138 ~~p~rrg-~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-G 214 (338)
T KOG0265|consen 138 LDPSRRG-PQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-G 214 (338)
T ss_pred cCccccC-CeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEee-c
Confidence 9855444 36888999999999999999999888865 5789999999899999999999999999999999999999 9
Q ss_pred ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC----CceeeEEEecCCCcEEEEEecCCcEEE
Q 016457 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG----TSVGKVGFFGETNKHLWCLTHIETLSI 241 (389)
Q Consensus 166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~l~~~~~d~~i~i 241 (389)
|.++|+.|..+|+|. .+++-+.|.++++||++.......++..+.++. .....++|+ +++..+.+++.|..+++
T Consensus 215 h~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws-p~~~~i~ags~dr~vyv 292 (338)
T KOG0265|consen 215 HADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS-PNGTKITAGSADRFVYV 292 (338)
T ss_pred ccCceeeEEeccCCC-ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc-CCCCccccccccceEEE
Confidence 999999999999996 999999999999999996554445455555543 345677898 78889999999999999
Q ss_pred EEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
||......+..+.+ |...|..+.|+|... +|.+++.|.+|++=+
T Consensus 293 wd~~~r~~lyklpG------------h~gsvn~~~Fhp~e~--iils~~sdk~i~lge 336 (338)
T KOG0265|consen 293 WDTTSRRILYKLPG------------HYGSVNEVDFHPTEP--IILSCSSDKTIYLGE 336 (338)
T ss_pred eecccccEEEEcCC------------cceeEEEeeecCCCc--EEEEeccCceeEeec
Confidence 99998889999988 779999999999988 899999999998743
No 44
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.5e-37 Score=268.15 Aligned_cols=260 Identities=18% Similarity=0.249 Sum_probs=226.9
Q ss_pred CccccCCCCeEEEEecCc-eeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCC
Q 016457 13 KSQSCDNVNSIKRFGLKN-SIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGP 91 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~ 91 (389)
..|-+-.|..|++|.+.. .++.+++... ...+=+.+.|-.+.+.|........++.+|.++|....|+|+
T Consensus 392 mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~---------l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd 462 (707)
T KOG0263|consen 392 MLACGFVDSSVRVWSLTPKKLKKLKDASD---------LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD 462 (707)
T ss_pred hhhccccccEEEEEecchhhhccccchhh---------hccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc
Confidence 455666778888888763 3344433111 112223444555777777777777789999999999999999
Q ss_pred CCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCee
Q 016457 92 STPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVT 171 (389)
Q Consensus 92 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 171 (389)
. ++|++++.|+++|+|.+.+..++-.+++|..+|+.+.|+|.|-++++++.|++-++|......+++.+. +|...|.
T Consensus 463 ~--rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-ghlsDV~ 539 (707)
T KOG0263|consen 463 R--RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-GHLSDVD 539 (707)
T ss_pred c--cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc-ccccccc
Confidence 9 799999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457 172 QVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA 251 (389)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 251 (389)
|+.|+|+. +++++|+.|.+|++||..++ ..++.+.+|..+|.+++|+ ++|.+|++|+.|+.|.+||+.+++.+.
T Consensus 540 cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G----~~VRiF~GH~~~V~al~~S-p~Gr~LaSg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 540 CVSFHPNS-NYVATGSSDRTVRLWDVSTG----NSVRIFTGHKGPVTALAFS-PCGRYLASGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred eEEECCcc-cccccCCCCceEEEEEcCCC----cEEEEecCCCCceEEEEEc-CCCceEeecccCCcEEEEEcCCCcchh
Confidence 99999999 59999999999999999976 4688889999999999999 799999999999999999999999999
Q ss_pred EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457 252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG 304 (389)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~ 304 (389)
.+.+ |.+.|.++.|+.+|. .|++|+.|.+|++||+....
T Consensus 614 ~l~~------------Ht~ti~SlsFS~dg~--vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 614 QLKG------------HTGTIYSLSFSRDGN--VLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred hhhc------------ccCceeEEEEecCCC--EEEecCCCCeEEEEEchhhc
Confidence 9988 779999999999999 99999999999999987543
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-37 Score=262.18 Aligned_cols=255 Identities=16% Similarity=0.212 Sum_probs=237.6
Q ss_pred eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEEC
Q 016457 74 GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDW 153 (389)
Q Consensus 74 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 153 (389)
.++..++..|.++.|+|.. ..++++-.+|.|.|||.++...++.+....-+|.+..|-+..+.+++|+.|..|++|+.
T Consensus 7 rk~~~rSdRVKsVd~HPte--Pw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTE--PWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hHhhccCCceeeeecCCCC--ceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 4455689999999999998 79999999999999999999999999998999999999989999999999999999999
Q ss_pred cCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE
Q 016457 154 RNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL 233 (389)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 233 (389)
.+++.+.++. +|.+.|+|++.+|..+ ++++++.|-.|++||... ...+...+.+|...|.+++|+|.+.+.++++
T Consensus 85 nt~ekV~~Fe-AH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~---~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 85 NTGEKVKTFE-AHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWEN---EWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred ccceeeEEee-ccccceeeeeecCCCC-eEEecCCccEEEEeeccC---ceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 9999999999 9999999999999998 999999999999999994 4567788899999999999999999999999
Q ss_pred ecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeE
Q 016457 234 THIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEA 313 (389)
Q Consensus 234 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~ 313 (389)
+-|++|++|.+.+..+..++.+ |...|.++.|-+-|++.||++|+.|.+|+|||..+..+ ++
T Consensus 160 sLDrTVKVWslgs~~~nfTl~g------------HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C------V~ 221 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEG------------HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC------VQ 221 (794)
T ss_pred eccccEEEEEcCCCCCceeeec------------cccCcceEEeccCCCcceEEecCCCceEEEeecchHHH------HH
Confidence 9999999999999999999997 77999999999999888999999999999999999887 78
Q ss_pred EEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcc
Q 016457 314 VLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSE 363 (389)
Q Consensus 314 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~ 363 (389)
++. ||...|..+ .|+|.-..++|||+||+||||+..+-..
T Consensus 222 TLe-GHt~Nvs~v---------~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 222 TLE-GHTNNVSFV---------FFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred Hhh-cccccceEE---------EecCCCcEEEEecCCccEEEecCcceeh
Confidence 886 999999999 8888888999999999999999876633
No 46
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-37 Score=232.27 Aligned_cols=283 Identities=14% Similarity=0.158 Sum_probs=230.6
Q ss_pred EEEeecCC-CCeEEEEec-------CCeEEEEeCCCceeeeeec--CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457 42 FEIVPKND-WSLMAVSLS-------TNVVKLYSPVTGQYSGECK--GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111 (389)
Q Consensus 42 ~~~~~~~~-~~~l~~~~~-------d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~ 111 (389)
.++.|+|- .++||++.. .|++.|.++...+-+..+. .-.+.+..++|+++.. +.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e-~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE-NQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc-ceEEEEecCceEEEecc
Confidence 47888883 234444432 6899999986544443332 2567899999999876 78999999999999996
Q ss_pred cC-CeEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457 112 RS-FHEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD 189 (389)
Q Consensus 112 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 189 (389)
.. ..++..++.|+.+|.++.|++..+. +++++-|++|++||...++.+.++. +|...|...+|+|..++++++++.|
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCCCCeEEEccCC
Confidence 53 4688999999999999999986655 4455559999999999999999999 9999999999999999999999999
Q ss_pred CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc-eeEEeecccccccCCccCCC
Q 016457 190 GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ-NVASFENARSLASDSWTLDD 268 (389)
Q Consensus 190 ~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~ 268 (389)
+.+++||++.. .....+..|...+.++.|+.-+...|++|+.|+.|+.||+++.+ ++..+.+ |
T Consensus 170 ~~l~lwdvr~~----gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g------------h 233 (311)
T KOG0277|consen 170 GTLRLWDVRSP----GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG------------H 233 (311)
T ss_pred ceEEEEEecCC----CceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC------------C
Confidence 99999999943 33344788999999999998888899999999999999998764 4555655 7
Q ss_pred CCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCC-CceeEEEe
Q 016457 269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQS-HGIFGWTG 347 (389)
Q Consensus 269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~-~~~~l~s~ 347 (389)
.-.|..++|||.... +|++++.|-+++|||...+.- .+.+. .-|++.|..+ .||+ +..++|++
T Consensus 234 ~~AVRkvk~Sph~~~-lLaSasYDmT~riw~~~~~ds-----~~e~~-~~HtEFv~g~---------Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 234 GLAVRKVKFSPHHAS-LLASASYDMTVRIWDPERQDS-----AIETV-DHHTEFVCGL---------DWSLFDPGQVAST 297 (311)
T ss_pred ceEEEEEecCcchhh-HhhhccccceEEecccccchh-----hhhhh-hccceEEecc---------ccccccCceeeec
Confidence 799999999998655 689999999999999986543 12233 3789999999 6664 46678999
Q ss_pred cCCCeEEEEec
Q 016457 348 GEDGRLCCWLS 358 (389)
Q Consensus 348 ~~dg~v~iW~~ 358 (389)
+.|+.++||+.
T Consensus 298 gWDe~l~Vw~p 308 (311)
T KOG0277|consen 298 GWDELLYVWNP 308 (311)
T ss_pred ccccceeeecc
Confidence 99999999984
No 47
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=240.37 Aligned_cols=327 Identities=37% Similarity=0.631 Sum_probs=255.6
Q ss_pred CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE--cCC-CCe
Q 016457 51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT--AGS-QEI 127 (389)
Q Consensus 51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~-~~v 127 (389)
..+|++.++|.|++||..+++.+..++++...++.++|....+++.+.+|+.||+|++||+++......+. .+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57899999999999999999999999999999999999876556899999999999999999876554443 332 467
Q ss_pred EEEEEeCCCCeEEEeec-----CCeEEEEECcCCce-eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC
Q 016457 128 FCFSFGGSTDYLLAAGC-----GSQIQFWDWRNKKQ-VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI 201 (389)
Q Consensus 128 ~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 201 (389)
.|++.+ ....++++|. +-.|.+||+|..+. +..+.+.|...|+++.|+|..+++|++|+.||.|.+||+...
T Consensus 121 ~~ld~n-ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d- 198 (376)
T KOG1188|consen 121 ICLDLN-CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD- 198 (376)
T ss_pred eEeecc-CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC-
Confidence 788876 3455555554 67899999998776 788877999999999999999999999999999999999855
Q ss_pred CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457 202 NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG 281 (389)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 281 (389)
++...+.....+...|..+.|..+..+.+.+.+...+..+|+++.+.....+......+...|......++...-. |.+
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~-~~~ 277 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS-PGD 277 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc-CCC
Confidence 4566777788899999999999776678999999999999999998876665543322222232223345555433 434
Q ss_pred CeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 282 ENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 282 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
..++++.|+.-+...++-+.........+++..+..+|...|+++ .|...+.+++|||+||.|.+|+.++.
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i---------~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI---------LFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH---------hhhcccceeeccCCCceEEEEecCCc
Confidence 444555665567777776654333333455677776788999999 78888889999999999999999888
Q ss_pred cccchhhhhhHHhhcCcccccccCCCCC
Q 016457 362 SEINRSWISNAMVMRSPKTHKKNRHNPY 389 (389)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (389)
.+....+-+.....+..+.+|+.++.||
T Consensus 349 ~e~~~s~~esl~i~ke~r~Rk~~~~~~y 376 (376)
T KOG1188|consen 349 TEINFSWTESLKIVKEPRNRKKNHHSPY 376 (376)
T ss_pred cccccccccccccccCccchhhccCCCC
Confidence 8888877666666677777777778888
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=9.1e-36 Score=238.24 Aligned_cols=290 Identities=18% Similarity=0.259 Sum_probs=236.8
Q ss_pred ceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC-CCCEEEEEecCCeEEE
Q 016457 30 NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS-TPHVLHSCSSDGTIRA 108 (389)
Q Consensus 30 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~l~s~~~dg~i~i 108 (389)
++...+.+++.|.++... ++.|++|+.||.+++||.. |+....+.+|.++|.+++|...+ ....|++++.|.++++
T Consensus 97 ~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 97 KPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred Cccccccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 345555557888888777 5799999999999999965 89999999999999988886544 1135999999999999
Q ss_pred EEccCCeE----EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC-------------------------Ccee
Q 016457 109 WDTRSFHE----VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN-------------------------KKQV 159 (389)
Q Consensus 109 wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------------------------~~~~ 159 (389)
|.++.+.. +..-++|+..|.++...+++..+++++.|..|++|+..+ +.++
T Consensus 174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 99886643 334458999999999999999999999999999999321 2345
Q ss_pred eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcE
Q 016457 160 ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239 (389)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i 239 (389)
.++. +|..+|.++.|++. ..+++++.|.+|+.||+.++. .......+..+.++.++ +...+|++|+.|..|
T Consensus 254 vtl~-GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~-----~~~~~~~~ksl~~i~~~-~~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 254 VTLE-GHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGG-----LKSTLTTNKSLNCISYS-PLSKLLASGSSDRHI 324 (423)
T ss_pred EEec-ccccceeeEEEcCC--CceEeecccceEEEEEeeccc-----ceeeeecCcceeEeecc-cccceeeecCCCCce
Confidence 5666 99999999999995 389999999999999999764 33333456788999999 578899999999999
Q ss_pred EEEEcCCCc---eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe
Q 016457 240 SIWDWKDGQ---NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV 316 (389)
Q Consensus 240 ~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~ 316 (389)
++||.+++. ..++|.+ |...|.++.|+|.... .|++|+.|+++++||+++.+- ++..+.
T Consensus 325 rl~DPR~~~gs~v~~s~~g------------H~nwVssvkwsp~~~~-~~~S~S~D~t~klWDvRS~k~-----plydI~ 386 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIG------------HKNWVSSVKWSPTNEF-QLVSGSYDNTVKLWDVRSTKA-----PLYDIA 386 (423)
T ss_pred eecCCCCCCCceeEEeeec------------chhhhhheecCCCCce-EEEEEecCCeEEEEEeccCCC-----cceeec
Confidence 999998763 3455666 7799999999998764 589999999999999998662 478886
Q ss_pred cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457 317 GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD 360 (389)
Q Consensus 317 ~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~ 360 (389)
+|.+.|.++ .|+ ++.+|+|||.|.+|++++-..
T Consensus 387 -~h~DKvl~v---------dW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 387 -GHNDKVLSV---------DWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred -cCCceEEEE---------ecc-CCceEEeccCcceEEEecccc
Confidence 999999999 443 234579999999999997543
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.2e-36 Score=265.26 Aligned_cols=266 Identities=20% Similarity=0.293 Sum_probs=230.4
Q ss_pred CccccCCCCeEEEEecC--c--eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeC-CCceeeeeecCCCCcEEEE
Q 016457 13 KSQSCDNVNSIKRFGLK--N--SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSP-VTGQYSGECKGHSSTVNQI 86 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~--~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~-~~~~~~~~~~~~~~~v~~i 86 (389)
..++++.++.+++|+.. + ..+.+.+ ...|++++|+|+++++++++.|++|+|||+ ..+..++++.+|...|+++
T Consensus 173 ~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~ 252 (456)
T KOG0266|consen 173 ALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSV 252 (456)
T ss_pred eEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEE
Confidence 46778899999999983 2 3445555 889999999999999999999999999999 5568999999999999999
Q ss_pred EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc--eeeeeee
Q 016457 87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK--QVACLEE 164 (389)
Q Consensus 87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~ 164 (389)
+|+|.+ +++++|+.|++|+|||+++++++..+.+|...|++++|++++..+++++.|+.|++||+.++. ++..+.
T Consensus 253 ~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~- 329 (456)
T KOG0266|consen 253 AFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLS- 329 (456)
T ss_pred EecCCC--CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeeccc-
Confidence 999999 799999999999999999999999999999999999999999999999889999999999998 456666
Q ss_pred cccC--CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCc---eeeEEEecCCCcEEEEEecCCcE
Q 016457 165 SHVE--DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTS---VGKVGFFGETNKHLWCLTHIETL 239 (389)
Q Consensus 165 ~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~d~~i 239 (389)
.+.. +++++.|+|++. ++++++.|+.+++||++.+ ........|... +.+...+ ..+.++++++.|+.|
T Consensus 330 ~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 330 GAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRSG----KSVGTYTGHSNLVRCIFSPTLS-TGGKLIYSGSEDGSV 403 (456)
T ss_pred CCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccCC----cceeeecccCCcceeEeccccc-CCCCeEEEEeCCceE
Confidence 4444 599999999996 9999999999999999954 445555556553 3333344 678999999999999
Q ss_pred EEEEcCCCceeEEeecccccccCCccCCC-CCceeeecccCCCCeEEEEEec--CCceEEEEEec
Q 016457 240 SIWDWKDGQNVASFENARSLASDSWTLDD-VDYFVDCHYPGEGENLWVIGGT--GAGTVGYFPVN 301 (389)
Q Consensus 240 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~g~--~dg~i~i~~~~ 301 (389)
++||+.++..+..+.+ | ...+..+.++|..+ ++++++ .|+.+++|...
T Consensus 404 ~~~~~~s~~~~~~l~~------------h~~~~~~~~~~~~~~~--~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 404 YVWDSSSGGILQRLEG------------HSKAAVSDLSSHPTEN--LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEeCCccchhhhhcC------------CCCCceeccccCCCcC--eeeecCcCCCceEEEecCC
Confidence 9999999888888887 5 58889999999988 778887 78999999754
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-36 Score=264.70 Aligned_cols=288 Identities=15% Similarity=0.240 Sum_probs=246.2
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
...|..++|+|....++++-..|.|++||..-+.++..|..|.++|..++|+|.. .+++||+.|-.|++|+..+.+++
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q--plFVSGGDDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ--PLFVSGGDDYKIKVWNYKTRRCL 86 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC--CeEEecCCccEEEEEecccceeh
Confidence 6788999999999999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (389)
.++.+|-+.|..+.|++.-+.+++++.|.+|+||+..+++++..+. +|...|.|..|+|... +++++|-|.+|++||+
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptED-lIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTED-LIVSASLDQTVRVWDI 164 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccc-eEEEecccceEEEEee
Confidence 9999999999999999999999999999999999999999999999 9999999999999885 9999999999999999
Q ss_pred CCCCCC------------------------Cc-cceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce--e
Q 016457 198 GGDIND------------------------DD-LLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN--V 250 (389)
Q Consensus 198 ~~~~~~------------------------~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~ 250 (389)
..-.+. .. ....+.+|...|+-++|+ |.-.++++|+.|..|++|.+...+. +
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-CCcceEEecCCcceeeEEEeccccceee
Confidence 732110 00 112345788999999999 5567999999999999999875432 2
Q ss_pred EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCC
Q 016457 251 ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMP 330 (389)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 330 (389)
-+..+ |...|.++.|+|..+ +|++.++|++|+|||+..... ++.+... .+.-+.+
T Consensus 244 Dtcrg------------H~nnVssvlfhp~q~--lIlSnsEDksirVwDm~kRt~------v~tfrre-ndRFW~l---- 298 (1202)
T KOG0292|consen 244 DTCRG------------HYNNVSSVLFHPHQD--LILSNSEDKSIRVWDMTKRTS------VQTFRRE-NDRFWIL---- 298 (1202)
T ss_pred hhhhc------------ccCCcceEEecCccc--eeEecCCCccEEEEecccccc------eeeeecc-CCeEEEE----
Confidence 33333 889999999999888 899999999999999997665 6666533 3455666
Q ss_pred cccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 331 SVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 331 ~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
+-+|..+++++| .|+-+.+|+++..
T Consensus 299 -----aahP~lNLfAAg-HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 299 -----AAHPELNLFAAG-HDSGMIVFKLERE 323 (1202)
T ss_pred -----EecCCcceeeee-cCCceEEEEEccc
Confidence 556666665554 5777788888843
No 51
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-34 Score=224.81 Aligned_cols=292 Identities=18% Similarity=0.230 Sum_probs=243.4
Q ss_pred eeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec--CCeEEEE
Q 016457 33 QTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS--DGTIRAW 109 (389)
Q Consensus 33 ~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~--dg~i~iw 109 (389)
+.+.. .+.|+++.|+++|..+++++.|.+++|||..+++.+.++..+.-.+..++|.... ..++.++. |.+||.-
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~--~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS--NTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC--ceEEEccCCCCCceEEE
Confidence 34444 7889999999999999999999999999999999999998888889999998776 46666655 8899999
Q ss_pred EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457 110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD 189 (389)
Q Consensus 110 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 189 (389)
++.+.+.++.|.+|...|++++.+|-++.+++++.|++|++||+|..++...+. ...-...+|.|+|- ++|++...
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~GL-ifA~~~~~ 161 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPEGL-IFALANGS 161 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCCCc-EEEEecCC
Confidence 999999999999999999999999999999999999999999999887776665 23334679999994 88888877
Q ss_pred CcEEEEecCCCCCCCccceeee---ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccC
Q 016457 190 GLICTFDTGGDINDDDLLESVI---NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTL 266 (389)
Q Consensus 190 ~~i~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 266 (389)
..|++||+|.-.. .+...+. ......+.+.|+ ++|++++.++..+.+++.|.-+|..+.++......
T Consensus 162 ~~IkLyD~Rs~dk--gPF~tf~i~~~~~~ew~~l~FS-~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~------- 231 (311)
T KOG1446|consen 162 ELIKLYDLRSFDK--GPFTTFSITDNDEAEWTDLEFS-PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA------- 231 (311)
T ss_pred CeEEEEEecccCC--CCceeEccCCCCccceeeeEEc-CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC-------
Confidence 7999999996422 2222222 345678999999 89999999999999999999999999888875411
Q ss_pred CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEE
Q 016457 267 DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWT 346 (389)
Q Consensus 267 ~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s 346 (389)
..--.+.+|+||++ ++++|+.||+|.+|+++++.. +..+...+..++.++ .|+|.-.+++|
T Consensus 232 --~~~~~~a~ftPds~--Fvl~gs~dg~i~vw~~~tg~~------v~~~~~~~~~~~~~~---------~fnP~~~mf~s 292 (311)
T KOG1446|consen 232 --GNLPLSATFTPDSK--FVLSGSDDGTIHVWNLETGKK------VAVLRGPNGGPVSCV---------RFNPRYAMFVS 292 (311)
T ss_pred --CCcceeEEECCCCc--EEEEecCCCcEEEEEcCCCcE------eeEecCCCCCCcccc---------ccCCceeeeee
Confidence 11226789999999 999999999999999999876 566663378888999 89999888888
Q ss_pred ecCCCeEEEEeccCC
Q 016457 347 GGEDGRLCCWLSDDS 361 (389)
Q Consensus 347 ~~~dg~v~iW~~~~~ 361 (389)
++ ..+-+|-.+..
T Consensus 293 a~--s~l~fw~p~~~ 305 (311)
T KOG1446|consen 293 AS--SNLVFWLPDED 305 (311)
T ss_pred cC--ceEEEEecccc
Confidence 76 57889977643
No 52
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-36 Score=227.55 Aligned_cols=264 Identities=17% Similarity=0.246 Sum_probs=223.7
Q ss_pred CCCeEEEEecC--ceeeeeec---CcceEEEeecCCC-CeEEEEecCCeEEEEeCCC-ceeeeeecCCCCcEEEEEEeCC
Q 016457 19 NVNSIKRFGLK--NSIQTNFG---DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVT-GQYSGECKGHSSTVNQISFSGP 91 (389)
Q Consensus 19 ~~~~i~~w~~~--~~~~~~~~---~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~~~~~ 91 (389)
..|.+.+.+.. ..+..... .+.++.++|++.. +.+++++.||+++|||... .+++..++.|...|.++.|++.
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 45788888874 33444333 8999999999865 6788888899999999643 4688999999999999999987
Q ss_pred CCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEE-eecCCeEEEEECcCCceeeeeeecccCCe
Q 016457 92 STPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLA-AGCGSQIQFWDWRNKKQVACLEESHVEDV 170 (389)
Q Consensus 92 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 170 (389)
.. +.+++++.|++|++|+...++.+.++.+|...|...+|+|....+++ ++.|+.+++||++.......+. .|...+
T Consensus 116 ~r-~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Ei 193 (311)
T KOG0277|consen 116 RR-RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEI 193 (311)
T ss_pred cc-eeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-ecccee
Confidence 65 67888899999999999999999999999999999999998766555 5559999999999765555576 899999
Q ss_pred eEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc-e
Q 016457 171 TQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ-N 249 (389)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~ 249 (389)
.|+.|+.-++++++||+.|+.|+.||++. ...++..+.+|+-.|..+.|+|....+|++++.|-+++|||...+. .
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~---~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~ 270 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRN---LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA 270 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhh---ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence 99999998888999999999999999994 4467888899999999999998888899999999999999988543 3
Q ss_pred eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457 250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV 300 (389)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 300 (389)
+.++.. |...+..+.|++.... ++++.+.|+.++||+-
T Consensus 271 ~e~~~~------------HtEFv~g~Dws~~~~~-~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 271 IETVDH------------HTEFVCGLDWSLFDPG-QVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhc------------cceEEeccccccccCc-eeeecccccceeeecc
Confidence 444443 7899999999997444 7899999999999974
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-37 Score=245.31 Aligned_cols=267 Identities=18% Similarity=0.220 Sum_probs=225.0
Q ss_pred CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457 13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS 89 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~ 89 (389)
...++..|++|++||.+ .+.+.+.| .+.|.|+.|.. +.|++|++|.+|++||+++|+++.++-+|.+.|..+.|+
T Consensus 209 kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ 286 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS 286 (499)
T ss_pred hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence 45678899999999987 57788888 99999999954 599999999999999999999999999999999999998
Q ss_pred CCCCCCEEEEEecCCeEEEEEccCCe---EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457 90 GPSTPHVLHSCSSDGTIRAWDTRSFH---EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH 166 (389)
Q Consensus 90 ~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (389)
++ ++++++.|.++.+||+.... +.+.+.+|...|+.+.|+ ++++++++.|.+|++|++.+.+.+.++. +|
T Consensus 287 -ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-gH 359 (499)
T KOG0281|consen 287 -NG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-GH 359 (499)
T ss_pred -CC---EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-cc
Confidence 44 99999999999999998654 335677899999999995 6699999999999999999999999998 99
Q ss_pred cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457 167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD 246 (389)
Q Consensus 167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 246 (389)
...|-|+.+. + .++++|+.|.+|++||+..+ .+++.+.+|+.-|.++.|. .+.+++|+.||+|++||+..
T Consensus 360 kRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G----~cLRvLeGHEeLvRciRFd---~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 360 KRGIACLQYR--D-RLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRFD---NKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred cccceehhcc--C-eEEEecCCCceEEEEecccc----HHHHHHhchHHhhhheeec---CceeeeccccceEEEEeccc
Confidence 9999999886 4 39999999999999999965 6788889999999999996 35799999999999999987
Q ss_pred CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
+...+.....-- ..-..+|.+.|..+.|..- -|++++.|.+|.|||+..+..
T Consensus 430 aldpra~~~~~C---l~~lv~hsgRVFrLQFD~f----qIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 430 ALDPRAPASTLC---LRTLVEHSGRVFRLQFDEF----QIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ccCCcccccchH---HHhhhhccceeEEEeecce----EEEeccCCCeEEEEEcCCCCc
Confidence 643321110000 0001127789999999762 578999999999999987653
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.8e-35 Score=235.49 Aligned_cols=265 Identities=15% Similarity=0.239 Sum_probs=230.2
Q ss_pred cccCCCCeEEEEecC-ceeeeeec-CcceEEEeecCCC---CeEEEEecCCeEEEEeCCCcee----eeeecCCCCcEEE
Q 016457 15 QSCDNVNSIKRFGLK-NSIQTNFG-DDYVFEIVPKNDW---SLMAVSLSTNVVKLYSPVTGQY----SGECKGHSSTVNQ 85 (389)
Q Consensus 15 ~s~~~~~~i~~w~~~-~~~~~~~~-~~~v~~~~~~~~~---~~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~v~~ 85 (389)
-+++.||.+++|+.. +...++.| .++|.+++|.-.+ ..|++++.|.++++|.++.++. +...+||...|-+
T Consensus 119 ltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~s 198 (423)
T KOG0313|consen 119 LTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDS 198 (423)
T ss_pred EEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeE
Confidence 467899999999985 67888888 8999988875433 3599999999999999887643 3444699999999
Q ss_pred EEEeCCCCCCEEEEEecCCeEEEEEccC-------------------------CeEEEEEEcCCCCeEEEEEeCCCCeEE
Q 016457 86 ISFSGPSTPHVLHSCSSDGTIRAWDTRS-------------------------FHEVWSVTAGSQEIFCFSFGGSTDYLL 140 (389)
Q Consensus 86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~ 140 (389)
+...+++ ..+++|+.|.+|.||+..+ +.++.++.+|..+|.++.|++ ...++
T Consensus 199 Vsv~~sg--tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~y 275 (423)
T KOG0313|consen 199 VSVDSSG--TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIY 275 (423)
T ss_pred EEecCCC--CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceE
Confidence 9999999 7999999999999999321 146778899999999999994 78899
Q ss_pred EeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeE
Q 016457 141 AAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKV 220 (389)
Q Consensus 141 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 220 (389)
+++.|.+|+.||+.++..+.++. ....++|+..+|... +|++|+.|..+++||.|++. ......++.+|...|.++
T Consensus 276 S~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssv 351 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSV 351 (423)
T ss_pred eecccceEEEEEeecccceeeee--cCcceeEeecccccc-eeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhhe
Confidence 99999999999999999999887 678899999999885 99999999999999999763 445567788999999999
Q ss_pred EEecCCCcEEEEEecCCcEEEEEcCCCc-eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 221 GFFGETNKHLWCLTHIETLSIWDWKDGQ-NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 221 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
.|+|.+...|++++.|+++++||+++.+ ++..+.+ |.+.|.++.|+..+ +|++|+.|.+|+|+.
T Consensus 352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~------------h~DKvl~vdW~~~~---~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG------------HNDKVLSVDWNEGG---LIVSGGADNKLRIFK 416 (423)
T ss_pred ecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc------------CCceEEEEeccCCc---eEEeccCcceEEEec
Confidence 9998888899999999999999999887 8888887 77999999999743 789999999999996
Q ss_pred ec
Q 016457 300 VN 301 (389)
Q Consensus 300 ~~ 301 (389)
-.
T Consensus 417 ~~ 418 (423)
T KOG0313|consen 417 GS 418 (423)
T ss_pred cc
Confidence 54
No 55
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.5e-35 Score=253.35 Aligned_cols=313 Identities=19% Similarity=0.238 Sum_probs=261.6
Q ss_pred CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457 12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF 88 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~ 88 (389)
+-.|-+-.||.|++|+.. ....++.| ..+|+++.|+..|..|++|+.|+.|.+||+-...-+..+.||.+.|+..-|
T Consensus 78 l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F 157 (888)
T KOG0306|consen 78 LLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALF 157 (888)
T ss_pred ceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhc
Confidence 345778889999999997 67778888 999999999999999999999999999999877778889999999998888
Q ss_pred eCCCCCCEEEEEecCCeEEEEEccCC------------------------------------------------------
Q 016457 89 SGPSTPHVLHSCSSDGTIRAWDTRSF------------------------------------------------------ 114 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~i~iwd~~~~------------------------------------------------------ 114 (389)
.... .++++.+.|+.|++||+.+.
T Consensus 158 ~~~~--~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~ 235 (888)
T KOG0306|consen 158 LNGD--SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKL 235 (888)
T ss_pred cCCC--eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeec
Confidence 8755 68888999999999988754
Q ss_pred --------------------------------------------------------------------------------
Q 016457 115 -------------------------------------------------------------------------------- 114 (389)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (389)
T Consensus 236 ~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~ 315 (888)
T KOG0306|consen 236 RGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLE 315 (888)
T ss_pred cceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHH
Confidence
Q ss_pred -------------------e-----------------------------EEEEEEcCCCCeEEEEEeCCCCeEEEeecCC
Q 016457 115 -------------------H-----------------------------EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS 146 (389)
Q Consensus 115 -------------------~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 146 (389)
. ....+.+|...|.+++++ +++.++.++..+
T Consensus 316 ~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS-~d~~~~~Sga~~ 394 (888)
T KOG0306|consen 316 TIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS-SDSILLASGAGE 394 (888)
T ss_pred heechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee-cCceeeeecCCC
Confidence 0 002234567788899998 666677777789
Q ss_pred eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC
Q 016457 147 QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET 226 (389)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 226 (389)
.|++|+..+.++++++. ...+.+..|-|.+. ++++|...|.+.+||+.+. ..+..+..|.+.|.+++.+ |+
T Consensus 395 SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHdgaIWsi~~~-pD 465 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRTIT---CGYILASKFVPGDR-YIVLGTKNGELQVFDLASA----SLVETIRAHDGAIWSISLS-PD 465 (888)
T ss_pred cEEEEEccCcceeEEec---cccEEEEEecCCCc-eEEEeccCCceEEEEeehh----hhhhhhhccccceeeeeec-CC
Confidence 99999999999999997 23789999999885 9999999999999999954 5567777899999999999 78
Q ss_pred CcEEEEEecCCcEEEEEcCC-----CceeE--EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 227 NKHLWCLTHIETLSIWDWKD-----GQNVA--SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 227 ~~~l~~~~~d~~i~i~d~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
+..+++++.|.+|++||..- +...+ .+...+. .+-++.|.++.+||||+ ||+.+--|.+++||-
T Consensus 466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt-------Lel~ddvL~v~~Spdgk--~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT-------LELEDDVLCVSVSPDGK--LLAVSLLDNTVKVYF 536 (888)
T ss_pred CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE-------EeccccEEEEEEcCCCc--EEEEEeccCeEEEEE
Confidence 88999999999999999641 11111 1111111 11457899999999999 999999999999999
Q ss_pred eccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 300 VNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
+++.+. ...++ ||.-||.++ ..|||++.++|||.|.+|++|-++-+
T Consensus 537 lDtlKF------flsLY-GHkLPV~sm---------DIS~DSklivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 537 LDTLKF------FLSLY-GHKLPVLSM---------DISPDSKLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred ecceee------eeeec-ccccceeEE---------eccCCcCeEEeccCCCceEEeccccc
Confidence 999876 56777 999999999 99999999999999999999999865
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=252.81 Aligned_cols=280 Identities=18% Similarity=0.232 Sum_probs=245.5
Q ss_pred eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE
Q 016457 41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120 (389)
Q Consensus 41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 120 (389)
.+=+.|+. .+.||+|. ...|++|+..+++.......+...|+++.|+++| .+|++|..+|.|.|||..+.+.+..+
T Consensus 180 ~nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G--~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 180 LNLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDG--SHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hhHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCC--CEEEEeecCCeEEEEehhhccccccc
Confidence 33466774 45788876 5689999999998766666568999999999999 79999999999999999999999999
Q ss_pred Ec-CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeee-eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457 121 TA-GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVAC-LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG 198 (389)
Q Consensus 121 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (389)
.+ |...|-+++|+ +..+.+++.++.|..+|++..+.... +. +|...|..+.|++++. ++++|+.|+.+.|||..
T Consensus 256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGL 331 (484)
T ss_pred cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECCCCC-eeccCCCccceEeccCC
Confidence 99 89999999996 66777777899999999998876655 65 8999999999999995 99999999999999996
Q ss_pred CCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec--CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457 199 GDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH--IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH 276 (389)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (389)
...+...+..|...|.+++|+|....+||+|+. |+.|++||..+++.+..+.. ...|.++.
T Consensus 332 ----~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-------------gsQVcsL~ 394 (484)
T KOG0305|consen 332 ----SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-------------GSQVCSLI 394 (484)
T ss_pred ----CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-------------CCceeeEE
Confidence 446788889999999999999888889998764 88999999999999888774 37899999
Q ss_pred ccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457 277 YPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356 (389)
Q Consensus 277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW 356 (389)
|++..+++...-|..+..|.||+..+.+. +..+. +|...|..+ ++||||..+++|+.|.++++|
T Consensus 395 Wsk~~kEi~sthG~s~n~i~lw~~ps~~~------~~~l~-gH~~RVl~l---------a~SPdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 395 WSKKYKELLSTHGYSENQITLWKYPSMKL------VAELL-GHTSRVLYL---------ALSPDGETIVTGAADETLRFW 458 (484)
T ss_pred EcCCCCEEEEecCCCCCcEEEEeccccce------eeeec-CCcceeEEE---------EECCCCCEEEEecccCcEEec
Confidence 99999887666777889999999998765 56665 999999999 999999999999999999999
Q ss_pred eccCC
Q 016457 357 LSDDS 361 (389)
Q Consensus 357 ~~~~~ 361 (389)
++-+.
T Consensus 459 ~~f~~ 463 (484)
T KOG0305|consen 459 NLFDE 463 (484)
T ss_pred cccCC
Confidence 99875
No 57
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-35 Score=254.48 Aligned_cols=281 Identities=16% Similarity=0.195 Sum_probs=252.6
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
...|.+++++.+...+++|+ .+.|+||+..+.+++.++.. +.+.+..|.|.+ .++++|...|.+.+||+.+...+
T Consensus 373 R~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd--~~Iv~G~k~Gel~vfdlaS~~l~ 447 (888)
T KOG0306|consen 373 RSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGD--RYIVLGTKNGELQVFDLASASLV 447 (888)
T ss_pred hhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCC--ceEEEeccCCceEEEEeehhhhh
Confidence 78899999999988888776 78899999999999999874 489999999988 79999999999999999999999
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC-----Cc--ee------eeeeecccCCeeEEEEecCCCCeEE
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN-----KK--QV------ACLEESHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~--~~------~~~~~~~~~~v~~~~~~~~~~~~l~ 184 (389)
.+++.|.+.|++++.+|++..+++++.|.+|++||..- +. .+ .++. -...|.|+.++|+++ +|+
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe--l~ddvL~v~~Spdgk-~La 524 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE--LEDDVLCVSVSPDGK-LLA 524 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe--ccccEEEEEEcCCCc-EEE
Confidence 99999999999999999999999999999999999752 11 11 2222 457899999999997 999
Q ss_pred EEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457 185 SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW 264 (389)
Q Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 264 (389)
++--|++|++|-+.+ .+....+.+|.-||.++..+ ++++++++|+.|..|++|-+.-|.|-+++..
T Consensus 525 VsLLdnTVkVyflDt----lKFflsLYGHkLPV~smDIS-~DSklivTgSADKnVKiWGLdFGDCHKS~fA--------- 590 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDT----LKFFLSLYGHKLPVLSMDIS-PDSKLIVTGSADKNVKIWGLDFGDCHKSFFA--------- 590 (888)
T ss_pred EEeccCeEEEEEecc----eeeeeeecccccceeEEecc-CCcCeEEeccCCCceEEeccccchhhhhhhc---------
Confidence 999999999999994 36677889999999999999 8889999999999999999999999999987
Q ss_pred cCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeE
Q 016457 265 TLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG 344 (389)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l 344 (389)
|.+.|.++.|-|... ++++++.|+.|+-||-...+. ++.+. +|...|+++ +.+|+|.|+
T Consensus 591 ---HdDSvm~V~F~P~~~--~FFt~gKD~kvKqWDg~kFe~------iq~L~-~H~~ev~cL---------av~~~G~~v 649 (888)
T KOG0306|consen 591 ---HDDSVMSVQFLPKTH--LFFTCGKDGKVKQWDGEKFEE------IQKLD-GHHSEVWCL---------AVSPNGSFV 649 (888)
T ss_pred ---ccCceeEEEEcccce--eEEEecCcceEEeechhhhhh------heeec-cchheeeee---------EEcCCCCeE
Confidence 779999999999776 778999999999999988776 67786 999999999 999999999
Q ss_pred EEecCCCeEEEEeccCC
Q 016457 345 WTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 345 ~s~~~dg~v~iW~~~~~ 361 (389)
+|+|.|.+||+|.-.+.
T Consensus 650 vs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 650 VSSSHDKSIRLWERTDE 666 (888)
T ss_pred EeccCCceeEeeeccCc
Confidence 99999999999998874
No 58
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.9e-34 Score=229.62 Aligned_cols=268 Identities=16% Similarity=0.170 Sum_probs=231.3
Q ss_pred CCCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEE
Q 016457 10 SQPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQI 86 (389)
Q Consensus 10 ~~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i 86 (389)
..+-.+|++.|..-.+|++. .....+.+ ++.|+++.|+.||.+||+|..+|.|+||...++.....+...-+.|.-+
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl 154 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWL 154 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEE
Confidence 55667899999999999986 45566666 9999999999999999999999999999999998888887677788889
Q ss_pred EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec-
Q 016457 87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES- 165 (389)
Q Consensus 87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~- 165 (389)
.|+|.+ ..|+.|+.||.+-.|.+.++...+.+.+|..++++=.|.|+|++++++..||+|++||+.+++++..+...
T Consensus 155 ~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e 232 (399)
T KOG0296|consen 155 KWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE 232 (399)
T ss_pred Eecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence 999988 79999999999999999998889999999999999999999999999999999999999999877665410
Q ss_pred -------------------------------------------------ccCCeeEEE---EecCCCCeEEEEeCCCcEE
Q 016457 166 -------------------------------------------------HVEDVTQVH---FVPNNQNKVVSASVDGLIC 193 (389)
Q Consensus 166 -------------------------------------------------~~~~v~~~~---~~~~~~~~l~~~~~d~~i~ 193 (389)
+...+.|+. ++..-+ +.|+|+-||+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~ 311 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIA 311 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc-hhhcccccceEE
Confidence 011111222 222233 788899999999
Q ss_pred EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457 194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV 273 (389)
Q Consensus 194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (389)
|||+... .++....|+.+|..+.|. + ..+|++++.+|.|+.||.++|+++..+.+ |...|.
T Consensus 312 iyD~a~~-----~~R~~c~he~~V~~l~w~-~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G------------H~~~Il 372 (399)
T KOG0296|consen 312 IYDLAAS-----TLRHICEHEDGVTKLKWL-N-TDYLLTACANGKVRQWDARTGQLKFTYTG------------HQMGIL 372 (399)
T ss_pred EEecccc-----hhheeccCCCceEEEEEc-C-cchheeeccCceEEeeeccccceEEEEec------------Cchhee
Confidence 9999853 367777899999999998 4 57999999999999999999999999998 779999
Q ss_pred eecccCCCCeEEEEEecCCceEEEEEec
Q 016457 274 DCHYPGEGENLWVIGGTGAGTVGYFPVN 301 (389)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 301 (389)
+++++|+.+ +++++|.|+..+||++.
T Consensus 373 ~f~ls~~~~--~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKR--LVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCc--EEEEecCCCeEEEEecC
Confidence 999999998 88999999999999874
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.3e-36 Score=248.89 Aligned_cols=269 Identities=16% Similarity=0.188 Sum_probs=235.6
Q ss_pred CccccCCCCeEEEEec---Cceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457 13 KSQSCDNVNSIKRFGL---KNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF 88 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~---~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~ 88 (389)
...+++.|+.|++|++ +.+++++.+ ..+|.+++|+++|..+++++.|+.|++||+++|+++..+. ....++|+.|
T Consensus 229 LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf 307 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKF 307 (503)
T ss_pred EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeec
Confidence 3568999999999997 468999999 9999999999999999999999999999999999999987 4567899999
Q ss_pred eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457 89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (389)
+|++. +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+.+.++++++.|+.++||+.+...++..+...+.-
T Consensus 308 ~pd~~-n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~h 386 (503)
T KOG0282|consen 308 HPDNQ-NIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMH 386 (503)
T ss_pred CCCCC-cEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhc
Confidence 99984 79999999999999999999999999999999999999999999999999999999999988877666544556
Q ss_pred CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC--CceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457 169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG--TSVGKVGFFGETNKHLWCLTHIETLSIWDWKD 246 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 246 (389)
.+.|+..+|+++ ++++-+.|+.|.+|.+.... .......+.+|. +.-..+.|+ +++.+|++|..||.+.+||.++
T Consensus 387 smP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys~~v~fS-pDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 387 TMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYSCQVDFS-PDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred cCcceecCCCCC-eehhhccCceEEEEeccccc-ccCHhhhhcceeccCceeeEEEc-CCCCeEEeecCCccEEEeechh
Confidence 688999999996 99999999999999977321 122233344553 445678899 8899999999999999999999
Q ss_pred CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
-+.+..+.. |...+..+.|+|.... -+|+++.||.|++|+
T Consensus 464 ~kl~~~lka------------h~~~ci~v~wHP~e~S-kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 464 TKLVSKLKA------------HDQPCIGVDWHPVEPS-KVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhcccc------------CCcceEEEEecCCCcc-eeEecccCceeEecC
Confidence 999998887 7799999999998654 579999999999996
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.8e-34 Score=240.71 Aligned_cols=265 Identities=23% Similarity=0.381 Sum_probs=230.4
Q ss_pred CCccccCCCCeEEEEecCc--eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457 12 PKSQSCDNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF 88 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~ 88 (389)
...++++.++.|++|+... ....+.. ...+..+.|+|+++.|++++.+|.|++|++.+++.+..+..|...|.++.|
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~ 101 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF 101 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEE
Confidence 4566778899999999863 4445555 778889999999999999999999999999988888888899999999999
Q ss_pred eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457 89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (389)
++++ .++++++.|+.|.+||+.+++....+..|...+.+++|+|++..+++++.++.|++||+++++.+..+. .|..
T Consensus 102 ~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~ 178 (289)
T cd00200 102 SPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTG 178 (289)
T ss_pred cCCC--CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-cCcc
Confidence 9987 688888889999999999999999999888899999999886666666669999999999988888888 7888
Q ss_pred CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457 169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ 248 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 248 (389)
.+.++.|+|++. .+++++.++.|++||++++ ..+..+..+...+.++.|+ +++.++++++.++.|++|++.+++
T Consensus 179 ~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 179 EVNSVAFSPDGE-KLLSSSSDGTIKLWDLSTG----KCLGTLRGHENGVNSVAFS-PDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred ccceEEECCCcC-EEEEecCCCcEEEEECCCC----ceecchhhcCCceEEEEEc-CCCcEEEEEcCCCcEEEEEcCCce
Confidence 999999999995 8888888999999999853 3344444677899999999 557788888889999999999888
Q ss_pred eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
....+.. |...+.+++|+++++ +|++++.||.|++|+
T Consensus 253 ~~~~~~~------------~~~~i~~~~~~~~~~--~l~~~~~d~~i~iw~ 289 (289)
T cd00200 253 CVQTLSG------------HTNSVTSLAWSPDGK--RLASGSADGTIRIWD 289 (289)
T ss_pred eEEEccc------------cCCcEEEEEECCCCC--EEEEecCCCeEEecC
Confidence 8888775 668899999999988 889999999999996
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.2e-35 Score=229.48 Aligned_cols=289 Identities=18% Similarity=0.223 Sum_probs=234.3
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCC------------c------eeeeeecCCCCcEEEEEEeCCCCCCEEEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT------------G------QYSGECKGHSSTVNQISFSGPSTPHVLHS 99 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~------------~------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s 99 (389)
+.++.+.+|+|||.++|+|+.|..|+|.|++. | -.+.++..|.+.|+++.|+|.. ..|++
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre--~ILiS 189 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE--TILIS 189 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh--heEEe
Confidence 88999999999999999999999999999861 1 2355677899999999999998 79999
Q ss_pred EecCCeEEEEEccCCeEE---EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--ecccCCeeEEE
Q 016457 100 CSSDGTIRAWDTRSFHEV---WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVH 174 (389)
Q Consensus 100 ~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~ 174 (389)
|+.|++|++||+...... +.|+. ..+|.++.|+|.|.+++++..-..+++||+++.++...-. ..|.+.|+++.
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd-~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~ 268 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQD-TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVR 268 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhc-cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEE
Confidence 999999999998754332 23332 5799999999999999999999999999999987754432 36889999999
Q ss_pred EecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee-cc-CCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEE
Q 016457 175 FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI-NV-GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVAS 252 (389)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 252 (389)
+++.+. +.++++.||.|++||--++ .++..+. .| +..|.+..|. .+++++++++.|..+++|.+.+++++..
T Consensus 269 Ys~t~~-lYvTaSkDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 269 YSSTGS-LYVTASKDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred ecCCcc-EEEEeccCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeeeeecCCceEEE
Confidence 999995 9999999999999998744 4555543 24 3578888898 8999999999999999999999999999
Q ss_pred eecccccccCCccCCCCCceeeecccCCCCeEEEEEecC-CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCc
Q 016457 253 FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG-AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPS 331 (389)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 331 (389)
+.+..... ....-+...|+...+ |++.-.+ .+.+.-||.++... +..+..+|.+.++.+
T Consensus 343 YtGAg~tg-------rq~~rtqAvFNhtEd--yVl~pDEas~slcsWdaRtadr------~~l~slgHn~a~R~i----- 402 (430)
T KOG0640|consen 343 YTGAGTTG-------RQKHRTQAVFNHTED--YVLFPDEASNSLCSWDARTADR------VALLSLGHNGAVRWI----- 402 (430)
T ss_pred EecCCccc-------chhhhhhhhhcCccc--eEEccccccCceeeccccchhh------hhhcccCCCCCceEE-----
Confidence 98742111 112234456777666 6555433 46799999998765 445556999999999
Q ss_pred ccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457 332 VQGRPAQSHGIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 332 ~~~~~~s~~~~~l~s~~~dg~v~iW~~~ 359 (389)
.-||.+.-+++||.|-..|+|--.
T Consensus 403 ----~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 403 ----VHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ----EeCCCCCceeeecccceeeeeeec
Confidence 777888888999999999999643
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-33 Score=268.93 Aligned_cols=278 Identities=18% Similarity=0.246 Sum_probs=225.7
Q ss_pred CccccCCCCeEEEEecCc----------eeeeeecCcceEEEeecCC-CCeEEEEecCCeEEEEeCCCceeeeeecCCCC
Q 016457 13 KSQSCDNVNSIKRFGLKN----------SIQTNFGDDYVFEIVPKND-WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS 81 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~----------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 81 (389)
..++++.|+.|++|+... +...+.+...|.+++|++. +.+|++++.||+|++||+.+++.+..+.+|.+
T Consensus 497 ~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~ 576 (793)
T PLN00181 497 FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK 576 (793)
T ss_pred EEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC
Confidence 477899999999999742 1222333677899999874 68999999999999999999999999999999
Q ss_pred cEEEEEEeC-CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeC-CCCeEEEeecCCeEEEEECcCCc-e
Q 016457 82 TVNQISFSG-PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGG-STDYLLAAGCGSQIQFWDWRNKK-Q 158 (389)
Q Consensus 82 ~v~~i~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~ 158 (389)
.|++++|+| ++ .+|++|+.|++|++||++++..+..+..+ ..+.++.|++ ++..+++++.||.|++||+++.+ .
T Consensus 577 ~V~~l~~~p~~~--~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~ 653 (793)
T PLN00181 577 RVWSIDYSSADP--TLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP 653 (793)
T ss_pred CEEEEEEcCCCC--CEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 999999997 55 69999999999999999999998888865 6899999964 57778888889999999998765 4
Q ss_pred eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC--CCccceeeeccCCceeeEEEecCCCcEEEEEecC
Q 016457 159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN--DDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI 236 (389)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 236 (389)
+..+. +|...|.++.|. ++ ..|++++.|+.|++||++.... ....+..+.+|...+..++|+ +++.+|++|+.|
T Consensus 654 ~~~~~-~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s-~~~~~lasgs~D 729 (793)
T PLN00181 654 LCTMI-GHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS-VSDGYIATGSET 729 (793)
T ss_pred ceEec-CCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc-CCCCEEEEEeCC
Confidence 56666 899999999997 45 4899999999999999984321 124566777888899999999 677899999999
Q ss_pred CcEEEEEcCCCceeEEeecc--cccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457 237 ETLSIWDWKDGQNVASFENA--RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV 300 (389)
Q Consensus 237 ~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 300 (389)
+.|++|+......+..+... ...... ....+...|.+++|+|++. +|++|+.||.|+||++
T Consensus 730 ~~v~iw~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~V~~v~ws~~~~--~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 730 NEVFVYHKAFPMPVLSYKFKTIDPVSGL-EVDDASQFISSVCWRGQSS--TLVAANSTGNIKILEM 792 (793)
T ss_pred CEEEEEECCCCCceEEEecccCCccccc-ccCCCCcEEEEEEEcCCCC--eEEEecCCCcEEEEec
Confidence 99999998776555443211 100000 0112557799999999998 8899999999999986
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-34 Score=254.00 Aligned_cols=272 Identities=18% Similarity=0.196 Sum_probs=236.8
Q ss_pred CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457 12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF 88 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~ 88 (389)
|-.-++-..|.|++||.. .++..+.. +++|..++|+|++.++++|++|-.|++|+..+.+++.++.||-+-|..+.|
T Consensus 22 PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~F 101 (1202)
T KOG0292|consen 22 PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFF 101 (1202)
T ss_pred CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeec
Confidence 334456678999999974 67777777 999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-----------
Q 016457 89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK----------- 157 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------- 157 (389)
++.- ..|+|++.|.+|+||+..+++++..+.+|...|-|..|+|....+++++-|.+|++||+..-+
T Consensus 102 Hhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~ 179 (1202)
T KOG0292|consen 102 HHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLED 179 (1202)
T ss_pred cCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchh
Confidence 9987 799999999999999999999999999999999999999999999999999999999985210
Q ss_pred -----------------eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeE
Q 016457 158 -----------------QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKV 220 (389)
Q Consensus 158 -----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 220 (389)
.++.+.++|...|+-++|+|.-+ +|++|+.|+.|++|.+... ....+....+|...|.++
T Consensus 180 ~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnet--KaWEvDtcrgH~nnVssv 256 (1202)
T KOG0292|consen 180 QMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET--KAWEVDTCRGHYNNVSSV 256 (1202)
T ss_pred hhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccc--cceeehhhhcccCCcceE
Confidence 12222248999999999999998 9999999999999999832 223456677899999999
Q ss_pred EEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457 221 GFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV 300 (389)
Q Consensus 221 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 300 (389)
-|+ +..+++++.+.|++|++||+...+.+++|.. ..+..+.++.+|..+ ++++| .|+-+.+|.+
T Consensus 257 lfh-p~q~lIlSnsEDksirVwDm~kRt~v~tfrr------------endRFW~laahP~lN--LfAAg-HDsGm~VFkl 320 (1202)
T KOG0292|consen 257 LFH-PHQDLILSNSEDKSIRVWDMTKRTSVQTFRR------------ENDRFWILAAHPELN--LFAAG-HDSGMIVFKL 320 (1202)
T ss_pred Eec-CccceeEecCCCccEEEEecccccceeeeec------------cCCeEEEEEecCCcc--eeeee-cCCceEEEEE
Confidence 999 6778999999999999999999999999975 347899999999987 55555 7777889988
Q ss_pred ccCC
Q 016457 301 NYGG 304 (389)
Q Consensus 301 ~~~~ 304 (389)
+..+
T Consensus 321 eREr 324 (1202)
T KOG0292|consen 321 ERER 324 (1202)
T ss_pred cccC
Confidence 7543
No 64
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.9e-34 Score=218.76 Aligned_cols=284 Identities=14% Similarity=0.133 Sum_probs=245.6
Q ss_pred eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee--ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457 35 NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE--CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111 (389)
Q Consensus 35 ~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~ 111 (389)
+++ ...|.+++|+.+|..|++|+.|+++.+|+++..+.... .++|.+.|-.++|.|... +++++++.|.+|++||+
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEEEEe
Confidence 344 67899999999999999999999999999987755543 468999999999999875 89999999999999999
Q ss_pred cCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457 112 RSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL 191 (389)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 191 (389)
+++++...+... ..-.-+.|+|+++++++++.|..|.+.|.++.+.+...+ ....+..+.|+.++ ++++.....|.
T Consensus 95 r~~k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~n-d~Fflt~GlG~ 170 (313)
T KOG1407|consen 95 RSGKCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSN-DLFFLTNGLGC 170 (313)
T ss_pred ccCcEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCC-CEEEEecCCce
Confidence 999999988875 444568899999999999999999999999998887775 56778899999766 47777777899
Q ss_pred EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCc
Q 016457 192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDY 271 (389)
Q Consensus 192 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (389)
|.|.... ..+++..+..|.....++.|+ |+|+++++|+.|-.+.+||+...-+++.+.. +.-+
T Consensus 171 v~ILsyp----sLkpv~si~AH~snCicI~f~-p~GryfA~GsADAlvSLWD~~ELiC~R~isR------------ldwp 233 (313)
T KOG1407|consen 171 VEILSYP----SLKPVQSIKAHPSNCICIEFD-PDGRYFATGSADALVSLWDVDELICERCISR------------LDWP 233 (313)
T ss_pred EEEEecc----ccccccccccCCcceEEEEEC-CCCceEeeccccceeeccChhHhhhheeecc------------ccCc
Confidence 9999887 457888899999999999999 8899999999999999999999888888886 5589
Q ss_pred eeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC-
Q 016457 272 FVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED- 350 (389)
Q Consensus 272 i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d- 350 (389)
|..+.|+.+|+ +||+|++|-.|-|=++++|.. +.+++ +.++...| +|+|...+||-+++|
T Consensus 234 VRTlSFS~dg~--~lASaSEDh~IDIA~vetGd~------~~eI~--~~~~t~tV---------AWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 234 VRTLSFSHDGR--MLASASEDHFIDIAEVETGDR------VWEIP--CEGPTFTV---------AWHPKRPLLAYACDDK 294 (313)
T ss_pred eEEEEeccCcc--eeeccCccceEEeEecccCCe------EEEee--ccCCceeE---------EecCCCceeeEEecCC
Confidence 99999999999 999999999999999999876 66665 78888899 888888888877644
Q ss_pred --------CeEEEEecc
Q 016457 351 --------GRLCCWLSD 359 (389)
Q Consensus 351 --------g~v~iW~~~ 359 (389)
|.|+++-+.
T Consensus 295 ~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 295 DGDSNREAGTVKIFGLS 311 (313)
T ss_pred CCccccccceeEEecCC
Confidence 566666543
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=8.7e-36 Score=240.80 Aligned_cols=282 Identities=16% Similarity=0.240 Sum_probs=241.3
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce--eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH 115 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 115 (389)
.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..++|+++.|.+++ ..+++++.|+.+++|++.+.+
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~--~~~iAas~d~~~r~Wnvd~~r 252 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN--KHVIAASNDKNLRLWNVDSLR 252 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC--ceEEeecCCCceeeeeccchh
Confidence 7889999999998899999999999999987665 677888888999999999998 799999999999999999999
Q ss_pred EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEE
Q 016457 116 EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTF 195 (389)
Q Consensus 116 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (389)
...++.+|.+.|+++.|......+++++.|.+|++||+....+..++. ..+.+..|..++ ..+++|..|+.|++|
T Consensus 253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~~---~~~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCSI---SDVISGHFDKKVRFW 327 (459)
T ss_pred hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEecc---eeeeecccccceEEE
Confidence 999999999999999998666668888889999999999988888776 456677777763 489999999999999
Q ss_pred ecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeee
Q 016457 196 DTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDC 275 (389)
Q Consensus 196 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (389)
|.++. .+..... ..+.|+++..+ .++..|++++.|.++.+.|+++.+..+.|...... .....+.+
T Consensus 328 D~Rs~----~~~~sv~-~gg~vtSl~ls-~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k--------~asDwtrv 393 (459)
T KOG0288|consen 328 DIRSA----DKTRSVP-LGGRVTSLDLS-MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK--------CASDWTRV 393 (459)
T ss_pred eccCC----ceeeEee-cCcceeeEeec-cCCeEEeeecCCCceeeeecccccEEEEeeccccc--------ccccccee
Confidence 99954 3344444 44599999999 78888999999999999999999888887643211 22447889
Q ss_pred cccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccce-eeeeccCCCcccCCCCCCCceeEEEecCCCeEE
Q 016457 276 HYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA-VVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLC 354 (389)
Q Consensus 276 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~ 354 (389)
.|||++. |+++|+.||.|+||++.++++ ...+...+.. .|+++ +|+|.|.+|++++.++.++
T Consensus 394 vfSpd~~--YvaAGS~dgsv~iW~v~tgKl------E~~l~~s~s~~aI~s~---------~W~~sG~~Llsadk~~~v~ 456 (459)
T KOG0288|consen 394 VFSPDGS--YVAAGSADGSVYIWSVFTGKL------EKVLSLSTSNAAITSL---------SWNPSGSGLLSADKQKAVT 456 (459)
T ss_pred EECCCCc--eeeeccCCCcEEEEEccCceE------EEEeccCCCCcceEEE---------EEcCCCchhhcccCCcceE
Confidence 9999999 999999999999999999887 4555544444 68888 9999999999999999999
Q ss_pred EEe
Q 016457 355 CWL 357 (389)
Q Consensus 355 iW~ 357 (389)
+|.
T Consensus 457 lW~ 459 (459)
T KOG0288|consen 457 LWT 459 (459)
T ss_pred ecC
Confidence 994
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-35 Score=255.98 Aligned_cols=246 Identities=17% Similarity=0.313 Sum_probs=202.9
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCC--------------------------------c---------------
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT--------------------------------G--------------- 70 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~--------------------------------~--------------- 70 (389)
.++|.+|.|++||++||+|+.|+.|+||.+.. .
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 88999999999999999999999999998644 0
Q ss_pred -------------eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC-
Q 016457 71 -------------QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST- 136 (389)
Q Consensus 71 -------------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 136 (389)
+++..|.||.+.|.+|.|+.++ +|++++.|.+|++|++...++++.|. |...|+|++|+|.+
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 1123457899999999999776 99999999999999999999999988 78999999999954
Q ss_pred CeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee----ec
Q 016457 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV----IN 212 (389)
Q Consensus 137 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~ 212 (389)
+++++|+-||.|+||++...+.+.-.. -..-|++++|.|+|+ ..++|+.+|.+++|+....+......... ..
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 566667779999999998777665554 458899999999996 99999999999999998542111110000 11
Q ss_pred cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC
Q 016457 213 VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA 292 (389)
Q Consensus 213 ~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d 292 (389)
....|+.+.|.|.+...+++.+.|..|+|||.++.+.+..|.+.+ ....-....|+.||+ +|+++++|
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~----------n~~SQ~~Asfs~Dgk--~IVs~seD 567 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR----------NTSSQISASFSSDGK--HIVSASED 567 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc----------cCCcceeeeEccCCC--EEEEeecC
Confidence 123799999997777789999999999999999999999998765 334456778999999 99999999
Q ss_pred ceEEEEEecc
Q 016457 293 GTVGYFPVNY 302 (389)
Q Consensus 293 g~i~i~~~~~ 302 (389)
..|++|+...
T Consensus 568 s~VYiW~~~~ 577 (712)
T KOG0283|consen 568 SWVYIWKNDS 577 (712)
T ss_pred ceEEEEeCCC
Confidence 9999999743
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=6.8e-34 Score=231.32 Aligned_cols=286 Identities=15% Similarity=0.165 Sum_probs=250.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
...+.++...|....+++|+.|..+.++|...++.+..+.||...|+.+.|+|+. ..+++++.|..|+||........
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccCc
Confidence 5678888888887899999999999999999999999999999999999999998 79999999999999999888888
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-cccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-SHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 196 (389)
.....|..+|+.+..+|.+.++++++.|+...+.|++++..+..... ...-.+++.+|+||| .+|.+|..|+.|+|||
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWD 375 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEE
Confidence 88889999999999999999999999999999999999998877762 123458999999999 5999999999999999
Q ss_pred cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457 197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH 276 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (389)
+.+. .....+.+|.++|..++|+ .+|-+|++++.|+.|++||++..+..+++... ....+.++.
T Consensus 376 lks~----~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRKl~n~kt~~l~-----------~~~~v~s~~ 439 (506)
T KOG0289|consen 376 LKSQ----TNVAKFPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLRKLKNFKTIQLD-----------EKKEVNSLS 439 (506)
T ss_pred cCCc----cccccCCCCCCceeEEEec-cCceEEEEEecCCeEEEEEehhhcccceeecc-----------ccccceeEE
Confidence 9943 4677888999999999999 89999999999999999999988877777642 224689999
Q ss_pred ccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457 277 YPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356 (389)
Q Consensus 277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW 356 (389)
|.+.|. ||+.++.|=.|++++-.+.+. ..+..+. .|.+..+++ .|....++++++|.|..++++
T Consensus 440 fD~SGt--~L~~~g~~l~Vy~~~k~~k~W----~~~~~~~-~~sg~st~v---------~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 440 FDQSGT--YLGIAGSDLQVYICKKKTKSW----TEIKELA-DHSGLSTGV---------RFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EcCCCC--eEEeecceeEEEEEecccccc----eeeehhh-hccccccee---------eecccceEEeeccchhheEEe
Confidence 999999 888888887777776555442 3345554 677888888 899999999999999999998
Q ss_pred ec
Q 016457 357 LS 358 (389)
Q Consensus 357 ~~ 358 (389)
.+
T Consensus 504 a~ 505 (506)
T KOG0289|consen 504 AL 505 (506)
T ss_pred ec
Confidence 65
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=250.65 Aligned_cols=279 Identities=18% Similarity=0.247 Sum_probs=240.6
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee-ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE-CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 116 (389)
...+.+..|. ..++++++.+.+|++|+..++..+.. +.+|.+.|.++++..-+ .+|++|+.|.++++||..++++
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~--~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG--DKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC--CEEEEEecCCcEEeEecCCCcE
Confidence 6778888888 45899999999999999999988888 99999999999998644 7999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196 (389)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 196 (389)
..++.+|.+.|.++... ...+++++.|.+|++|++.++..+..+. +|..+|.++..+ + .++++|+.|++|++||
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--E-PLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--C-CEEEEEecCceEEEEE
Confidence 99999999999999974 5566667789999999999999999998 799999999998 4 4999999999999999
Q ss_pred cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeee
Q 016457 197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDC 275 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (389)
..+ .+++..+.+|...|.++.+. .. ..+++|+.|++|++||+++. +++.++.+ |...+..+
T Consensus 358 ~~~----~~cl~sl~gH~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~------------h~~~v~~l 419 (537)
T KOG0274|consen 358 PRT----GKCLKSLSGHTGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG------------HTSLVSSL 419 (537)
T ss_pred hhh----ceeeeeecCCcceEEEEEec-Cc-ceEEeeeeccceEeecCCchhhhhhhhcC------------Cccccccc
Confidence 994 47889999999999999886 32 78999999999999999999 89999987 55666555
Q ss_pred cccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEE
Q 016457 276 HYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCC 355 (389)
Q Consensus 276 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~i 355 (389)
.+. ++ +|++++.|+.|++||..+++. +..+...|...|..+ ++. ...+++++.||.+++
T Consensus 420 ~~~--~~--~Lvs~~aD~~Ik~WD~~~~~~------~~~~~~~~~~~v~~l---------~~~--~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 420 LLR--DN--FLVSSSADGTIKLWDAEEGEC------LRTLEGRHVGGVSAL---------ALG--KEEILCSSDDGSVKL 478 (537)
T ss_pred ccc--cc--eeEeccccccEEEeecccCce------eeeeccCCcccEEEe---------ecC--cceEEEEecCCeeEE
Confidence 554 35 889999999999999999887 677762266788888 333 345688889999999
Q ss_pred EeccCCcccc
Q 016457 356 WLSDDSSEIN 365 (389)
Q Consensus 356 W~~~~~~~~~ 365 (389)
||+.......
T Consensus 479 ~dl~~~~~~~ 488 (537)
T KOG0274|consen 479 WDLRSGTLIR 488 (537)
T ss_pred EecccCchhh
Confidence 9999875444
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-34 Score=252.36 Aligned_cols=258 Identities=16% Similarity=0.198 Sum_probs=208.9
Q ss_pred eeec-CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC--------------------------------C------
Q 016457 74 GECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS--------------------------------F------ 114 (389)
Q Consensus 74 ~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~--------------------------------~------ 114 (389)
+.+. +|.+.|+++.|+++| +|||+||.|+.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DG--KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDG--KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eccccccCCcEEEEEeCCCC--ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 3455 799999999999999 8999999999999998765 0
Q ss_pred ----------------------eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeE
Q 016457 115 ----------------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQ 172 (389)
Q Consensus 115 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 172 (389)
++++.|.+|...|..+.|+ .+++||+++.|.+|++|++...+++..|. |...|+|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEEe--cCCeeEE
Confidence 4556678899999999999 78899999999999999999999999997 9999999
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEE
Q 016457 173 VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVAS 252 (389)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 252 (389)
++|+|.+.++|++|+-|+.|+||++.. ..+........-|++++|. |+|+..++|+.+|.+++|+....+....
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d-----~~Vv~W~Dl~~lITAvcy~-PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISD-----KKVVDWNDLRDLITAVCYS-PDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCc-----CeeEeehhhhhhheeEEec-cCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 999999888999999999999999983 3355566667899999999 6799999999999999999998776655
Q ss_pred eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcc
Q 016457 253 FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSV 332 (389)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 332 (389)
+.-..... ....|. .|+.+.|.|.... -|+..+.|..|+|||.....+ +..+. |+...-. +
T Consensus 489 ~~I~~~~~---Kk~~~~-rITG~Q~~p~~~~-~vLVTSnDSrIRI~d~~~~~l------v~KfK-G~~n~~S-------Q 549 (712)
T KOG0283|consen 489 FHIRLHNK---KKKQGK-RITGLQFFPGDPD-EVLVTSNDSRIRIYDGRDKDL------VHKFK-GFRNTSS-------Q 549 (712)
T ss_pred eeEeeccC---ccccCc-eeeeeEecCCCCC-eEEEecCCCceEEEeccchhh------hhhhc-ccccCCc-------c
Confidence 44221000 011133 7999999986543 245566899999999977665 55555 3331111 1
Q ss_pred cCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 333 QGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 333 ~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
+.+.|+.||++|+++++|..|++|+.+..
T Consensus 550 ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 550 ISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred eeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 22379999999999999999999998655
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-34 Score=235.61 Aligned_cols=297 Identities=17% Similarity=0.206 Sum_probs=242.1
Q ss_pred eEEEEecCceeeeeecCcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEE
Q 016457 22 SIKRFGLKNSIQTNFGDDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSC 100 (389)
Q Consensus 22 ~i~~w~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~ 100 (389)
.++.|+-.+........+.|.+++|+|... -+|+.+ .-.+.||+..+....+.+......|.++.|..|| .+|+.|
T Consensus 10 e~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG--~LlaaG 86 (487)
T KOG0310|consen 10 EIRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDG--RLLAAG 86 (487)
T ss_pred cchhhhhhcccccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCC--eEEEcc
Confidence 355676544444444478999999999653 345444 4679999998888888787788999999999999 799999
Q ss_pred ecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCC
Q 016457 101 SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179 (389)
Q Consensus 101 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 179 (389)
+..|.|+|||..+...++.++.|..++..+.|+|.++.+++.++ |+.+++||+.+......+. +|++.|.|.+|+|..
T Consensus 87 D~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~~ 165 (487)
T KOG0310|consen 87 DESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPAN 165 (487)
T ss_pred CCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccCC
Confidence 99999999998777788899999999999999999988887766 7889999999888755777 999999999999998
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce-eEEeecccc
Q 016457 180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN-VASFENARS 258 (389)
Q Consensus 180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~ 258 (389)
+.++++|+.||.|++||+++. ........|+.+|..+.+. +.+..+++++. +.+++||+.+|.. +.....
T Consensus 166 ~hivvtGsYDg~vrl~DtR~~----~~~v~elnhg~pVe~vl~l-psgs~iasAgG-n~vkVWDl~~G~qll~~~~~--- 236 (487)
T KOG0310|consen 166 DHIVVTGSYDGKVRLWDTRSL----TSRVVELNHGCPVESVLAL-PSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN--- 236 (487)
T ss_pred CeEEEecCCCceEEEEEeccC----CceeEEecCCCceeeEEEc-CCCCEEEEcCC-CeEEEEEecCCceehhhhhc---
Confidence 789999999999999999953 2344456799999999999 66677777655 5899999986644 434433
Q ss_pred cccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCC
Q 016457 259 LASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQ 338 (389)
Q Consensus 259 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s 338 (389)
|...|+++++..++. -|++|+-|+.+++||+.+.+. +..+ .-.++|.++ +.+
T Consensus 237 ---------H~KtVTcL~l~s~~~--rLlS~sLD~~VKVfd~t~~Kv------v~s~--~~~~pvLsi---------avs 288 (487)
T KOG0310|consen 237 ---------HNKTVTCLRLASDST--RLLSGSLDRHVKVFDTTNYKV------VHSW--KYPGPVLSI---------AVS 288 (487)
T ss_pred ---------ccceEEEEEeecCCc--eEeecccccceEEEEccceEE------EEee--ecccceeeE---------Eec
Confidence 779999999999998 679999999999999877554 2222 245778888 999
Q ss_pred CCceeEEEecCCCeEEEEecc
Q 016457 339 SHGIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 339 ~~~~~l~s~~~dg~v~iW~~~ 359 (389)
|+++.++.|..||.+.+=+..
T Consensus 289 ~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 289 PDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred CCCceEEEecccceeeeehhh
Confidence 999999999999998776444
No 71
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-34 Score=231.34 Aligned_cols=267 Identities=13% Similarity=0.131 Sum_probs=230.5
Q ss_pred CccccCCCCeEEEEecC-----ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec-CCCCcEEE
Q 016457 13 KSQSCDNVNSIKRFGLK-----NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK-GHSSTVNQ 85 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~-----~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~ 85 (389)
..||++.|.+..+|.+. +..+++.+ ..+|..+.|+||.++|++++.+..+.+||+.+|.....+. +|...+.+
T Consensus 238 yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~s 317 (519)
T KOG0293|consen 238 YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSS 317 (519)
T ss_pred eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcce
Confidence 68999999999999974 34667777 8999999999999999999999999999999999888775 35688999
Q ss_pred EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457 86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE 164 (389)
Q Consensus 86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 164 (389)
++|.||+ ..+++|+.|+++..||++ |..+...++- ...|.+++..++|.++++.+.|..|++++.++...+..+.
T Consensus 318 c~W~pDg--~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis- 393 (519)
T KOG0293|consen 318 CAWCPDG--FRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS- 393 (519)
T ss_pred eEEccCC--ceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-
Confidence 9999999 799999999999999986 5555555554 3569999999999999999999999999998876665554
Q ss_pred cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCC--ceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457 165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT--SVGKVGFFGETNKHLWCLTHIETLSIW 242 (389)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d~~i~i~ 242 (389)
...+|+++..+.+++ ++++--.+..+.+||+. +...+.++.+|.. .+..-+|-..+..++++|+.|+.|+||
T Consensus 394 -e~~~its~~iS~d~k-~~LvnL~~qei~LWDl~----e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIW 467 (519)
T KOG0293|consen 394 -EEQPITSFSISKDGK-LALVNLQDQEIHLWDLE----ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIW 467 (519)
T ss_pred -ccCceeEEEEcCCCc-EEEEEcccCeeEEeecc----hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEE
Confidence 567899999999996 88888889999999999 4466777777753 455666765667899999999999999
Q ss_pred EcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
+..+++++..+.+ |...|.+++|+|.... ++|+++.||+|+||....
T Consensus 468 hr~sgkll~~LsG------------Hs~~vNcVswNP~~p~-m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 468 HRISGKLLAVLSG------------HSKTVNCVSWNPADPE-MFASASDDGTIRIWGPSD 514 (519)
T ss_pred EccCCceeEeecC------------CcceeeEEecCCCCHH-HhhccCCCCeEEEecCCc
Confidence 9999999999998 7799999999998876 579999999999997764
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=231.83 Aligned_cols=261 Identities=17% Similarity=0.205 Sum_probs=223.8
Q ss_pred CeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE
Q 016457 21 NSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL 97 (389)
Q Consensus 21 ~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l 97 (389)
-.+.+|+.. ...+++.- ++.|.++.|..||++||+|...|.|+|||..+...+..+.+|+.+|..+.|+|.+. ..+
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~-t~l 126 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDN-TML 126 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCC-eEE
Confidence 456777765 34444555 88999999999999999999999999999877778889999999999999999885 789
Q ss_pred EEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEE-eecCCeEEEEECcCC-ceeeeeeecccCCeeEEEE
Q 016457 98 HSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLA-AGCGSQIQFWDWRNK-KQVACLEESHVEDVTQVHF 175 (389)
Q Consensus 98 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~ 175 (389)
++|+.|+.+++||+.+......+.+|++.|.|.+|+|..+.+++ ||.||.|++||++.. ..+.++. |..+|..+.+
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~ 204 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLA 204 (487)
T ss_pred EecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEE
Confidence 99999999999999999887789999999999999998776554 555999999999987 6777776 9999999999
Q ss_pred ecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457 176 VPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN 255 (389)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 255 (389)
-|.|. ++++++ ...|++||+.++. +.+.....|...|+++.+. .++..|++++-|+.+++||+.+.+.++.+.
T Consensus 205 lpsgs-~iasAg-Gn~vkVWDl~~G~---qll~~~~~H~KtVTcL~l~-s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~- 277 (487)
T KOG0310|consen 205 LPSGS-LIASAG-GNSVKVWDLTTGG---QLLTSMFNHNKTVTCLRLA-SDSTRLLSGSLDRHVKVFDTTNYKVVHSWK- 277 (487)
T ss_pred cCCCC-EEEEcC-CCeEEEEEecCCc---eehhhhhcccceEEEEEee-cCCceEeecccccceEEEEccceEEEEeee-
Confidence 99995 888887 5689999999654 3445555699999999999 677999999999999999999889888887
Q ss_pred ccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 256 ARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
..++|.+++.+|+++ .++.|..||.+.+=+....+.
T Consensus 278 ------------~~~pvLsiavs~dd~--t~viGmsnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 278 ------------YPGPVLSIAVSPDDQ--TVVIGMSNGLVSIRRREVKKK 313 (487)
T ss_pred ------------cccceeeEEecCCCc--eEEEecccceeeeehhhcccC
Confidence 448999999999998 779999999888875555443
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-33 Score=218.63 Aligned_cols=295 Identities=16% Similarity=0.214 Sum_probs=249.4
Q ss_pred eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457 31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109 (389)
Q Consensus 31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 109 (389)
.++.+.| .+.|..++-......+.+++.|.+.+||.+++|.++..+.||.+.|++|+|++.+ .++++++.|++-.||
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~--~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG--LLLLTASGDETAHIW 217 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecccc--ceEEEccCCcchHHH
Confidence 4455666 8999999988877899999999999999999999999999999999999999988 799999999999999
Q ss_pred Ec------cCC----------------------------------eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEE
Q 016457 110 DT------RSF----------------------------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQ 149 (389)
Q Consensus 110 d~------~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 149 (389)
.. ... .++..+.+|...|.+..|...+..+++++.|.+-.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 72 110 35667888999999999998899999999999999
Q ss_pred EEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcE
Q 016457 150 FWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKH 229 (389)
Q Consensus 150 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 229 (389)
+||+++++++..+. +|....+.++-+|..+ ++++++.|.+.++||++. ....+..+.+|...|+++.|. . +..
T Consensus 298 lwDVEtge~v~~Lt-GHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFRe---aI~sV~VFQGHtdtVTS~vF~-~-dd~ 370 (481)
T KOG0300|consen 298 LWDVETGEVVNILT-GHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFRE---AIQSVAVFQGHTDTVTSVVFN-T-DDR 370 (481)
T ss_pred eeeeccCceecccc-CcchhccccccCCcce-EEEEeccCceeEeccchh---hcceeeeecccccceeEEEEe-c-CCc
Confidence 99999999999999 9999999999999986 999999999999999992 345677788999999999997 3 347
Q ss_pred EEEEecCCcEEEEEcCCCc-eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcccc
Q 016457 230 LWCLTHIETLSIWDWKDGQ-NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI 308 (389)
Q Consensus 230 l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~ 308 (389)
+++|+.|.+|++||+++.+ ++.++. ...++..++.+..+. +|+.--.+..|++||+...++..+
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIR-------------tdS~~NRvavs~g~~--iIAiPhDNRqvRlfDlnG~RlaRl 435 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIR-------------TDSPANRVAVSKGHP--IIAIPHDNRQVRLFDLNGNRLARL 435 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeee-------------cCCccceeEeecCCc--eEEeccCCceEEEEecCCCccccC
Confidence 9999999999999998764 555555 337788889888776 788888889999999998776222
Q ss_pred CCCeEEEecccceeeeeccCCCcccCCCCCCCc--eeEEEecCCCeEEEEeccCC
Q 016457 309 GPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHG--IFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 309 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~--~~l~s~~~dg~v~iW~~~~~ 361 (389)
-..-..+|...|.|+ +|..+. .-|+++|.|..+.-|+++.+
T Consensus 436 ---PrtsRqgHrRMV~c~---------AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 436 ---PRTSRQGHRRMVTCC---------AWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ---Ccccccccceeeeee---------eccccCcccccccccccceeeeeEeccc
Confidence 223335899999999 444332 23789999999999999764
No 74
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.7e-31 Score=236.97 Aligned_cols=259 Identities=14% Similarity=0.213 Sum_probs=191.6
Q ss_pred ceEEEeecCCCCeEEEEecCCeEEEEeCCCc----------eee---eeecCCCCcEEEEEEeC-CCCCCEEEEEecCCe
Q 016457 40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG----------QYS---GECKGHSSTVNQISFSG-PSTPHVLHSCSSDGT 105 (389)
Q Consensus 40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~----------~~~---~~~~~~~~~v~~i~~~~-~~~~~~l~s~~~dg~ 105 (389)
.|.....++++..+++++.+.....|+...+ +.. ..+.+|.+.|.+++|+| ++ ++|++|+.|++
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~--~~LaSgS~Dgt 99 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP--QKLFTASEDGT 99 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC--CEEEEEeCCCE
Confidence 3444555666555566665666666654332 211 24678999999999999 66 69999999999
Q ss_pred EEEEEccCC-------eEEEEEEcCCCCeEEEEEeCCC-CeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEec
Q 016457 106 IRAWDTRSF-------HEVWSVTAGSQEIFCFSFGGST-DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVP 177 (389)
Q Consensus 106 i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 177 (389)
|++||+.++ .++..+.+|...|.+++|+|.+ +.|++++.|+.|++||+++++.+..+. .|...|.+++|+|
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla~sp 178 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLEWNL 178 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEEEEC
Confidence 999999764 3567889999999999999976 577888889999999999999888887 8999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCc-eeeEEEecCCCcEEEEEe----cCCcEEEEEcCCCce-eE
Q 016457 178 NNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTS-VGKVGFFGETNKHLWCLT----HIETLSIWDWKDGQN-VA 251 (389)
Q Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~-~~ 251 (389)
++. +|++++.|+.|++||++++ ..+..+..|... +..+.|. +++..+++++ .|+.|++||+++... +.
T Consensus 179 dG~-lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~-~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 179 DGS-LLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWA-KRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred CCC-EEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEc-CCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 995 9999999999999999964 345566667654 3467787 4445555543 478999999987643 33
Q ss_pred EeecccccccCCccCCCCCceeeecccCCCCeEEEEEec-CCceEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457 252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT-GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV 326 (389)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 326 (389)
..... +...+....|+++++ +|++|+ .||.|++||+.+++. +......+..++..+
T Consensus 253 ~~~~d-----------~~~~~~~~~~d~d~~--~L~lggkgDg~Iriwdl~~~~~------~~~~~~~s~~~~~g~ 309 (493)
T PTZ00421 253 TVDLD-----------QSSALFIPFFDEDTN--LLYIGSKGEGNIRCFELMNERL------TFCSSYSSVEPHKGL 309 (493)
T ss_pred EeccC-----------CCCceEEEEEcCCCC--EEEEEEeCCCeEEEEEeeCCce------EEEeeccCCCCCcce
Confidence 22211 224556677899988 666665 599999999998765 333332344555666
No 75
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.7e-32 Score=211.46 Aligned_cols=278 Identities=17% Similarity=0.179 Sum_probs=220.5
Q ss_pred CcceEEEeecC-CCCeEEEEecCCeEEEEeCCC-ceee-eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457 38 DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVT-GQYS-GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF 114 (389)
Q Consensus 38 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 114 (389)
.+.|.+++||| ...+++.|+.|++||+|+++. |..+ +....|.++|.+++|+.++ ..+++|+.|+.+++||+.++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg--skVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG--SKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC--ceEEeeccCCceEEEEccCC
Confidence 78899999999 456777888999999999986 4433 3445699999999999999 79999999999999999998
Q ss_pred eEEEEEEcCCCCeEEEEEeCCCC--eEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcE
Q 016457 115 HEVWSVTAGSQEIFCFSFGGSTD--YLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI 192 (389)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 192 (389)
.+..+..|..+|.++.|-+... .|++++.|.+|++||+|...++.++. -.+.+.++..-. + +++++..++.|
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~~--p-m~vVata~r~i 178 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVLY--P-MAVVATAERHI 178 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhccC--c-eeEEEecCCcE
Confidence 5567888999999999986555 56777779999999999999999987 567777776643 3 88889999999
Q ss_pred EEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC--ceeEEeecccccccCCccCCCCC
Q 016457 193 CTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG--QNVASFENARSLASDSWTLDDVD 270 (389)
Q Consensus 193 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 270 (389)
.+|+++.+..+.+.+.. ...-.+++++.. .+.+..+.|+-+|.+.|..+..+ +.-.+|..|+...... +..-
T Consensus 179 ~vynL~n~~te~k~~~S--pLk~Q~R~va~f-~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~---~~VY 252 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIES--PLKWQTRCVACF-QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN---DDVY 252 (347)
T ss_pred EEEEcCCCcchhhhhcC--cccceeeEEEEE-ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC---CceE
Confidence 99999865433332222 244568899888 56666799999999999999876 4445666666432210 1235
Q ss_pred ceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe
Q 016457 271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG 347 (389)
Q Consensus 271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~ 347 (389)
.|.+++|+|.-. .|++.+.||++.+||-+.... +...+ .|..+|++. +|+.+|.++|-+
T Consensus 253 aVNsi~FhP~hg--tlvTaGsDGtf~FWDkdar~k------Lk~s~-~~~qpItcc---------~fn~~G~ifaYA 311 (347)
T KOG0647|consen 253 AVNSIAFHPVHG--TLVTAGSDGTFSFWDKDARTK------LKTSE-THPQPITCC---------SFNRNGSIFAYA 311 (347)
T ss_pred EecceEeecccc--eEEEecCCceEEEecchhhhh------hhccC-cCCCcccee---------EecCCCCEEEEE
Confidence 788999999877 789999999999999887654 45554 788999999 899999887665
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-32 Score=234.52 Aligned_cols=260 Identities=18% Similarity=0.257 Sum_probs=225.8
Q ss_pred CCeEEEEecCc-eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCCCC
Q 016457 20 VNSIKRFGLKN-SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPSTPH 95 (389)
Q Consensus 20 ~~~i~~w~~~~-~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~ 95 (389)
...|.+|+... .+..+.. .+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. . .
T Consensus 196 g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~--~ 271 (484)
T KOG0305|consen 196 GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S--S 271 (484)
T ss_pred cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--C--c
Confidence 35789999753 3344433 78999999999999999999999999999999999999988 99999999998 3 4
Q ss_pred EEEEEecCCeEEEEEccCCeEEEE-EEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEE
Q 016457 96 VLHSCSSDGTIRAWDTRSFHEVWS-VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVH 174 (389)
Q Consensus 96 ~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 174 (389)
.+.+|+.|+.|..+|++..+.... +.+|...|..+.|++++.+++++|.|+.+.|||....+++..+. .|...|..++
T Consensus 272 ~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~a 350 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALA 350 (484)
T ss_pred eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEee
Confidence 899999999999999998766555 88899999999999999999999999999999998888999998 8999999999
Q ss_pred EecCCCCeEEEEe--CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE-ecCCcEEEEEcCCCceeE
Q 016457 175 FVPNNQNKVVSAS--VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL-THIETLSIWDWKDGQNVA 251 (389)
Q Consensus 175 ~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~ 251 (389)
|+|-.+++||+|+ .|+.|++||..++. ..........|.++.|++...+++.+. ..++.|.||+..+.+.+.
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~-----~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~ 425 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGA-----RIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA 425 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCc-----EecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee
Confidence 9999888999975 59999999999663 333345678999999996555555443 346799999999988888
Q ss_pred EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457 252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG 303 (389)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~ 303 (389)
.+.+ |...|..++++|||. .+++|+.|.++++|++-..
T Consensus 426 ~l~g------------H~~RVl~la~SPdg~--~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 426 ELLG------------HTSRVLYLALSPDGE--TIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eecC------------CcceeEEEEECCCCC--EEEEecccCcEEeccccCC
Confidence 8887 779999999999999 8899999999999998764
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4e-32 Score=241.13 Aligned_cols=263 Identities=18% Similarity=0.270 Sum_probs=232.4
Q ss_pred CccccCCCCeEEEEecCc--eeee-eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457 13 KSQSCDNVNSIKRFGLKN--SIQT-NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF 88 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~--~~~~-~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~ 88 (389)
...+.+.+++|++|+..+ .+.. +.| .+.|.++++..-+.+|++|+.|.++++||..+|++...+.+|.+.|.++..
T Consensus 220 ~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI 299 (537)
T ss_pred eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc
Confidence 345788899999999864 4444 777 999999999987789999999999999999999999999999999999988
Q ss_pred eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457 89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (389)
.+ .++++|+.|.+|++|++.++..+..+.+|..+|.++..+ ++.+++++.|++|++||+.+++++.++. +|..
T Consensus 300 ~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~ 372 (537)
T KOG0274|consen 300 DP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTG 372 (537)
T ss_pred cC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcc
Confidence 64 478999999999999999999999999999999999996 8899999999999999999999999999 8999
Q ss_pred CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457 169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ 248 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 248 (389)
.|.++.+.+. +.+++|+.|+.|++||+++.. +++..+..|...+..+.+. +++|++++.|++|++||..+++
T Consensus 373 ~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~~---~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 373 RVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLLR---DNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred eEEEEEecCc--ceEEeeeeccceEeecCCchh---hhhhhhcCCcccccccccc---cceeEeccccccEEEeecccCc
Confidence 9999988876 389999999999999999542 6777788888888777764 4689999999999999999999
Q ss_pred eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
+++.+.+. |...+..+++. .. .+++++.||.+++||+.+++.
T Consensus 445 ~~~~~~~~-----------~~~~v~~l~~~--~~--~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 445 CLRTLEGR-----------HVGGVSALALG--KE--EILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eeeeeccC-----------CcccEEEeecC--cc--eEEEEecCCeeEEEecccCch
Confidence 99999873 33677777776 22 678888999999999999876
No 78
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.4e-34 Score=222.77 Aligned_cols=269 Identities=14% Similarity=0.161 Sum_probs=233.3
Q ss_pred CCCCCccccCCCCeEEEEecCc--ee--------eeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec
Q 016457 9 QSQPKSQSCDNVNSIKRFGLKN--SI--------QTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK 77 (389)
Q Consensus 9 ~~~~~~~s~~~~~~i~~w~~~~--~~--------~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 77 (389)
++....++++-||.|.+||..+ .- ..+.- +++|.|+.|+.|...||+|+.||.|++|.+.+|+++..|.
T Consensus 223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd 302 (508)
T KOG0275|consen 223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD 302 (508)
T ss_pred CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence 3444678899999999999631 11 11222 8899999999999999999999999999999999999997
Q ss_pred -CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC
Q 016457 78 -GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK 156 (389)
Q Consensus 78 -~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 156 (389)
+|+..|+|+.|+.++ ..+++++.|.++++.-+.+|+++..+++|.+.|+...|.++|..++++++||+|++|+.++.
T Consensus 303 rAHtkGvt~l~FSrD~--SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 303 RAHTKGVTCLSFSRDN--SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT 380 (508)
T ss_pred hhhccCeeEEEEccCc--chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch
Confidence 799999999999999 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeee-cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec---cCCceeeEEEecCCCcEEEE
Q 016457 157 KQVACLEE-SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN---VGTSVGKVGFFGETNKHLWC 232 (389)
Q Consensus 157 ~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~ 232 (389)
+++.+++. +...+|.++-.-|.++..++++...++|+|.++... .++.+.. ..+...+.+.+ |.|.++++
T Consensus 381 eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-----vVrsfsSGkREgGdFi~~~lS-pkGewiYc 454 (508)
T KOG0275|consen 381 ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-----VVRSFSSGKREGGDFINAILS-PKGEWIYC 454 (508)
T ss_pred hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-----EEeeeccCCccCCceEEEEec-CCCcEEEE
Confidence 99998873 344578999999988879999999999999999842 2333322 23345556677 78899999
Q ss_pred EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 233 LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 233 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
.+.|+.++.|...+|+..+++.. |+..+..++-+|..+ .|++-++||.+++|.
T Consensus 455 igED~vlYCF~~~sG~LE~tl~V------------hEkdvIGl~HHPHqN--llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 455 IGEDGVLYCFSVLSGKLERTLPV------------HEKDVIGLTHHPHQN--LLASYSEDGLLKLWK 507 (508)
T ss_pred EccCcEEEEEEeecCceeeeeec------------ccccccccccCcccc--hhhhhcccchhhhcC
Confidence 99999999999999999999887 778899999999888 889999999999994
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1e-33 Score=214.58 Aligned_cols=264 Identities=16% Similarity=0.237 Sum_probs=226.2
Q ss_pred ccCCCCe--EEEEecCceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457 16 SCDNVNS--IKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS 92 (389)
Q Consensus 16 s~~~~~~--i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~ 92 (389)
+++.|+. +|-=+.+.-+-++.+ +++|.+..++.+..+.|+++.|-+-++||.-+|..+.++. |...|.+++|+.+.
T Consensus 34 sa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds 112 (334)
T KOG0278|consen 34 SASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDS 112 (334)
T ss_pred EeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccc
Confidence 3444443 333345567889999 9999999999999899999999999999999999999997 89999999999998
Q ss_pred CCCEEEEEecCCeEEEEEccCCe-EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCee
Q 016457 93 TPHVLHSCSSDGTIRAWDTRSFH-EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVT 171 (389)
Q Consensus 93 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 171 (389)
++|++|+.++.+||||++..+ +...+.+|.+.|..+.|...+..+++++.|++|++||.+++..++++. ...+|+
T Consensus 113 --~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~Vt 188 (334)
T KOG0278|consen 113 --NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVT 188 (334)
T ss_pred --hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCc
Confidence 799999999999999998654 567789999999999999888999999999999999999999999997 788999
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457 172 QVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA 251 (389)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 251 (389)
++.++++|. +++-...+.|.+||..+. ..+. ....+..|.+..++ |+...+++|+.|..++.||..++..+.
T Consensus 189 SlEvs~dG~--ilTia~gssV~Fwdaksf----~~lK-s~k~P~nV~SASL~-P~k~~fVaGged~~~~kfDy~TgeEi~ 260 (334)
T KOG0278|consen 189 SLEVSQDGR--ILTIAYGSSVKFWDAKSF----GLLK-SYKMPCNVESASLH-PKKEFFVAGGEDFKVYKFDYNTGEEIG 260 (334)
T ss_pred ceeeccCCC--EEEEecCceeEEeccccc----ccee-eccCcccccccccc-CCCceEEecCcceEEEEEeccCCceee
Confidence 999999985 556666788999999853 2333 33455678888998 566899999999999999999999888
Q ss_pred EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
.+.. +|.++|.++.|+|+|. .-++|++||+|++|....++.
T Consensus 261 ~~nk-----------gh~gpVhcVrFSPdGE--~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 261 SYNK-----------GHFGPVHCVRFSPDGE--LYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eccc-----------CCCCceEEEEECCCCc--eeeccCCCceEEEEEecCCCc
Confidence 8622 2889999999999998 779999999999999887665
No 80
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=7.1e-31 Score=233.97 Aligned_cols=229 Identities=15% Similarity=0.246 Sum_probs=179.5
Q ss_pred EecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe--------EEEEEEcCCCCe
Q 016457 56 SLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH--------EVWSVTAGSQEI 127 (389)
Q Consensus 56 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v 127 (389)
|+.++.|++|+......+..+.+|.+.|.+++|+|+.. .+|++|+.|++|+|||+.++. ++..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~-~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFS-EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCC-CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 55678999999887778888999999999999999732 699999999999999997542 345678899999
Q ss_pred EEEEEeCCCCeEE-EeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcc
Q 016457 128 FCFSFGGSTDYLL-AAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDL 206 (389)
Q Consensus 128 ~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 206 (389)
.+++|+|.+..++ +++.|+.|++||+++++.+..+. |...|.+++|+|+|. +|++++.|+.|++||++++ ..
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg----~~ 201 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ----EI 201 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC----cE
Confidence 9999999888765 66779999999999998877775 667899999999995 9999999999999999964 34
Q ss_pred ceeeeccCCceeeEE-----EecCCCcEEEEEecCC----cEEEEEcCC-CceeEEeecccccccCCccCCCCCceeeec
Q 016457 207 LESVINVGTSVGKVG-----FFGETNKHLWCLTHIE----TLSIWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCH 276 (389)
Q Consensus 207 ~~~~~~~~~~i~~~~-----~~~~~~~~l~~~~~d~----~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (389)
+..+..|.+.+.... |+ +++.+|++++.++ +|+|||+++ .+++..+.... +...+....
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs-~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~----------~~~~L~p~~ 270 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLG-GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN----------ASAPLIPHY 270 (568)
T ss_pred EEEEecccCCceeEEEEeeeEc-CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC----------CccceEEee
Confidence 566677876654333 33 5667888887764 799999985 45565543211 223333333
Q ss_pred ccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 277 YPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
..+++. ++++|+.|+.|++|++..+..
T Consensus 271 D~~tg~--l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 271 DESTGL--IYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred eCCCCC--EEEEEECCCeEEEEEccCCcE
Confidence 344455 788999999999999987643
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9e-32 Score=220.59 Aligned_cols=298 Identities=14% Similarity=0.176 Sum_probs=243.5
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee----ee-------------e-cCCCCcEEEEEEeCCCCCCEEEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS----GE-------------C-KGHSSTVNQISFSGPSTPHVLHS 99 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~----~~-------------~-~~~~~~v~~i~~~~~~~~~~l~s 99 (389)
.-+|.+++++|++++.++++.+++|.-|++.+|+.. .. - .+|...+.+++.++++ .+|++
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg--kylat 219 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG--KYLAT 219 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC--cEEEe
Confidence 788999999999999999999999999999887632 11 1 2688899999999999 79999
Q ss_pred EecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCC
Q 016457 100 CSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179 (389)
Q Consensus 100 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 179 (389)
|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|++.....+.++. +|++.|..|.....+
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~IdaL~re 298 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGVLGIDALSRE 298 (479)
T ss_pred cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCccceeeechhccc
Confidence 9999999999999999999999999999999999778889999999999999999999999998 999999999988887
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccc
Q 016457 180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSL 259 (389)
Q Consensus 180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 259 (389)
+ .+-+|+.|+++++|++.. .....+.++.+.+.+++|. +...+++|+.+|.|.+|++...+++.+......+
T Consensus 299 R-~vtVGgrDrT~rlwKi~e-----esqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 299 R-CVTVGGRDRTVRLWKIPE-----ESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred c-eEEeccccceeEEEeccc-----cceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 5 677777999999999962 2344556778899999997 4468999999999999999999998887643322
Q ss_pred ccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCC
Q 016457 260 ASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQS 339 (389)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~ 339 (389)
....-...+..+|++++..|..+ ++++|+.+|.|++|.+..+-- .-.++..+. -.+.|+++ +|++
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sd--L~asGS~~G~vrLW~i~~g~r--~i~~l~~ls--~~GfVNsl---------~f~~ 435 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSD--LLASGSWSGCVRLWKIEDGLR--AINLLYSLS--LVGFVNSL---------AFSN 435 (479)
T ss_pred cCCccccccccceeeeEecccCc--eEEecCCCCceEEEEecCCcc--ccceeeecc--cccEEEEE---------EEcc
Confidence 22111112335899999999888 899999999999999988721 001233332 45788888 8999
Q ss_pred CceeEEE-ecCCCeEEEEeccCC
Q 016457 340 HGIFGWT-GGEDGRLCCWLSDDS 361 (389)
Q Consensus 340 ~~~~l~s-~~~dg~v~iW~~~~~ 361 (389)
+|++|++ .|....+--|-....
T Consensus 436 sgk~ivagiGkEhRlGRW~~~k~ 458 (479)
T KOG0299|consen 436 SGKRIVAGIGKEHRLGRWWCLKS 458 (479)
T ss_pred CCCEEEEecccccccceeeEeec
Confidence 9995555 466666766766544
No 82
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.2e-30 Score=232.61 Aligned_cols=247 Identities=9% Similarity=0.120 Sum_probs=191.0
Q ss_pred ccCCCCeEEEEecCc--eeeeeec-CcceEEEeecCC-CCeEEEEecCCeEEEEeCCCce--------eeeeecCCCCcE
Q 016457 16 SCDNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKND-WSLMAVSLSTNVVKLYSPVTGQ--------YSGECKGHSSTV 83 (389)
Q Consensus 16 s~~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~--------~~~~~~~~~~~v 83 (389)
.++.++.|++|+... .+..+.+ .+.|.+++|+|+ +.+||+|+.|++|+|||+.++. ++..+.+|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 456678899998753 5566677 889999999997 7899999999999999997642 334678899999
Q ss_pred EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee
Q 016457 84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE 163 (389)
Q Consensus 84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 163 (389)
.+++|+|++. .+|++++.|++|+|||+++++.+..+. +...|.+++|+|++..+++++.|+.|++||+++++.+.++.
T Consensus 129 ~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 129 SIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 9999999873 456899999999999999998887776 45789999999999999888889999999999999998887
Q ss_pred ecccCCeeEE-----EEecCCCCeEEEEeCCC----cEEEEecCCCCCCCccceeeeccCCcee--eEEEecCCCcEEEE
Q 016457 164 ESHVEDVTQV-----HFVPNNQNKVVSASVDG----LICTFDTGGDINDDDLLESVINVGTSVG--KVGFFGETNKHLWC 232 (389)
Q Consensus 164 ~~~~~~v~~~-----~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~l~~ 232 (389)
+|.+.+.+. .|++++. +|++++.|+ .|++||++... .++... .+..... .-.+.++++.++++
T Consensus 207 -gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~---~pl~~~-~ld~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 207 -IHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTT---SALVTM-SIDNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred -cccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCC---CceEEE-EecCCccceEEeeeCCCCCEEEE
Confidence 888765433 3457775 888877664 79999999421 233322 2222222 22444567889999
Q ss_pred EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457 233 LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG 281 (389)
Q Consensus 233 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 281 (389)
|+.|+.|++|++..+. +..+.... +..+..+++|.|..
T Consensus 281 GkGD~tIr~~e~~~~~-~~~l~~~~----------s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 281 GKGDGNCRYYQHSLGS-IRKVNEYK----------SCSPFRSFGFLPKQ 318 (568)
T ss_pred EECCCeEEEEEccCCc-EEeecccc----------cCCCccceEEcccc
Confidence 9999999999998763 33343322 55778889999964
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=223.09 Aligned_cols=295 Identities=15% Similarity=0.163 Sum_probs=221.7
Q ss_pred eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce----eeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457 34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ----YSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIR 107 (389)
Q Consensus 34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~----~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~ 107 (389)
.+.+ ...|.++++.|.|..|++|+.|.+|++||+.... ..+.+ ......|+++.|++.+ ..|++.+.....+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg--~~iLvvsg~aqak 239 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG--DQILVVSGSAQAK 239 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC--CeEEEEecCccee
Confidence 4555 8899999999999999999999999999987432 12222 2244579999999999 6777777788899
Q ss_pred EEEccCCeEEEE------------EEcCCCCeEEEEEeCCCC-eEEEeecCCeEEEEECcCCc-eeeeee----ecccCC
Q 016457 108 AWDTRSFHEVWS------------VTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWRNKK-QVACLE----ESHVED 169 (389)
Q Consensus 108 iwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~----~~~~~~ 169 (389)
|+|-...+.+.. -++|...++|.+|+|... .+++++.||++++||+...+ .++.+. .+..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 999654333322 246788999999999754 57778889999999998653 333333 133457
Q ss_pred eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCC--ceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457 170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT--SVGKVGFFGETNKHLWCLTHIETLSIWDWKDG 247 (389)
Q Consensus 170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 247 (389)
++.++|+++++ +||+|+.||.|.+|+.++.. .......-..|.. .|++|.|+ .+|++|++-+.|+++++||+++.
T Consensus 320 ~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS-~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 320 VTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFS-YDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ceeeecCCCcc-hhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEec-cccchhhhccCCCceeeeecccc
Confidence 89999999996 99999999999999986432 1122223344555 89999999 89999999999999999999976
Q ss_pred -ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC------CceEEEEEeccCCccccCCCeEEEecccc
Q 016457 248 -QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG------AGTVGYFPVNYGGAATIGPPEAVLVGGHT 320 (389)
Q Consensus 248 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~------dg~i~i~~~~~~~~~~~~~~~~~~~~~h~ 320 (389)
+++....+.. ...+-+.++|||+.+ +|++|+. .|.+.+||..+.+. ++.+. -..
T Consensus 397 kkpL~~~tgL~----------t~~~~tdc~FSPd~k--li~TGtS~~~~~~~g~L~f~d~~t~d~------v~ki~-i~~ 457 (641)
T KOG0772|consen 397 KKPLNVRTGLP----------TPFPGTDCCFSPDDK--LILTGTSAPNGMTAGTLFFFDRMTLDT------VYKID-IST 457 (641)
T ss_pred ccchhhhcCCC----------ccCCCCccccCCCce--EEEecccccCCCCCceEEEEeccceee------EEEec-CCC
Confidence 4555555433 335678899999988 8888864 47899999888765 56665 345
Q ss_pred eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE-eccCC
Q 016457 321 AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW-LSDDS 361 (389)
Q Consensus 321 ~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW-~~~~~ 361 (389)
..|..+ .|+|.-+.|+.|+.||.+++| +...+
T Consensus 458 aSvv~~---------~WhpkLNQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 458 ASVVRC---------LWHPKLNQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred ceEEEE---------eecchhhheeeecCCCceEEEECcccc
Confidence 555555 788887778888889999875 44433
No 84
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=231.58 Aligned_cols=312 Identities=17% Similarity=0.206 Sum_probs=245.8
Q ss_pred CCCeEEEEecCc------eeeeeecCcceEEEeecCC-----------CCeEEEEecCCeEEEEeCCCc---eeee----
Q 016457 19 NVNSIKRFGLKN------SIQTNFGDDYVFEIVPKND-----------WSLMAVSLSTNVVKLYSPVTG---QYSG---- 74 (389)
Q Consensus 19 ~~~~i~~w~~~~------~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~d~~i~iw~~~~~---~~~~---- 74 (389)
.|..+++||+.. +...+.+...|+.+.--|. ...+.+++.|++|++|+++.+ +..+
T Consensus 344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil 423 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL 423 (1080)
T ss_pred cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence 578999999853 3333444666777664441 126889999999999998642 1110
Q ss_pred ------e------------------------ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCC
Q 016457 75 ------E------------------------CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGS 124 (389)
Q Consensus 75 ------~------------------------~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 124 (389)
. .-.....+.+++.+|++ ++|++|..-|++++|++...+....+..|.
T Consensus 424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g--qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe 501 (1080)
T KOG1408|consen 424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG--QHLASGDRGGNLRVYDLQELEYTCFMEAHE 501 (1080)
T ss_pred hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc--ceecccCccCceEEEEehhhhhhhheeccc
Confidence 0 01123569999999999 899999999999999999999999999999
Q ss_pred CCeEEEEEeCC---CCeEEEeecCCeEEEEECcCC-ceeeeeeecccCCeeEEEEecCCC-CeEEEEeCCCcEEEEecCC
Q 016457 125 QEIFCFSFGGS---TDYLLAAGCGSQIQFWDWRNK-KQVACLEESHVEDVTQVHFVPNNQ-NKVVSASVDGLICTFDTGG 199 (389)
Q Consensus 125 ~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~ 199 (389)
.+|.|+.|+-. .+.|++++.|..|++||.... .+++++. +|...|+++.|--.|- ..+++++.|..|.+--.+.
T Consensus 502 sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-~HSssITsvKFa~~gln~~MiscGADksimFr~~qk 580 (1080)
T KOG1408|consen 502 SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQK 580 (1080)
T ss_pred ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc-ccccceeEEEEeecCCceEEEeccCchhhheehhcc
Confidence 99999999742 345666777999999998754 5677887 8999999999987762 2789999998775432221
Q ss_pred CCCC-CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeeccc
Q 016457 200 DIND-DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYP 278 (389)
Q Consensus 200 ~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 278 (389)
...- ......-......+..++.. +..+++++++.|..|+|||+.+++..+.|++.+ +|++....+...
T Consensus 581 ~~~g~~f~r~t~t~~ktTlYDm~Vd-p~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~---------~~eG~lIKv~lD 650 (1080)
T KOG1408|consen 581 ASSGRLFPRHTQTLSKTTLYDMAVD-PTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR---------DHEGDLIKVILD 650 (1080)
T ss_pred ccCceeccccccccccceEEEeeeC-CCcceEEEEecccceEEEeccccceeeeecccc---------cCCCceEEEEEC
Confidence 0000 00001111124568889998 778899999999999999999999999999865 377889999999
Q ss_pred CCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457 279 GEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS 358 (389)
Q Consensus 279 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~ 358 (389)
|.|. ||++...|.++.++|+.+++. +.+.. ||.+.|+.+ .|.+|.+.|++.+.||.|.+|++
T Consensus 651 PSgi--Y~atScsdktl~~~Df~sgEc------vA~m~-GHsE~VTG~---------kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 651 PSGI--YLATSCSDKTLCFVDFVSGEC------VAQMT-GHSEAVTGV---------KFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred CCcc--EEEEeecCCceEEEEeccchh------hhhhc-Ccchheeee---------eecccchhheeecCCceEEEEEC
Confidence 9988 999999999999999999887 77887 999999999 99999999999999999999999
Q ss_pred cCC
Q 016457 359 DDS 361 (389)
Q Consensus 359 ~~~ 361 (389)
...
T Consensus 713 p~~ 715 (1080)
T KOG1408|consen 713 PLT 715 (1080)
T ss_pred chh
Confidence 864
No 85
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=3.1e-33 Score=226.10 Aligned_cols=262 Identities=14% Similarity=0.156 Sum_probs=223.8
Q ss_pred CCccccCCCCeEEEEecC----ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEE
Q 016457 12 PKSQSCDNVNSIKRFGLK----NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQI 86 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~----~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i 86 (389)
...++++.|..|++|+.. ..+.++.| .++|+++.|.+++..+++++.|+.+++|++...+...++.+|++.|+++
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a 267 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA 267 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee
Confidence 568899999999999984 25667777 8899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457 87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH 166 (389)
Q Consensus 87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (389)
.|.... ..+++|+.|.+|++||+....+..++.. .+.+..|..+ ...++++-.|++|++||+++..+..... .
T Consensus 268 k~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~- 340 (459)
T KOG0288|consen 268 KFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP-L- 340 (459)
T ss_pred hhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEee-c-
Confidence 998776 4599999999999999999888877664 4667777775 4566667779999999999999999987 4
Q ss_pred cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee----ccCCceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457 167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI----NVGTSVGKVGFFGETNKHLWCLTHIETLSIW 242 (389)
Q Consensus 167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~ 242 (389)
.+.|+++..++++. .+++++.|.++.+.|+++.. ....+. ......+.+.|+ |++.|+++|+.||.|+||
T Consensus 341 gg~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~e----I~~~~sA~g~k~asDwtrvvfS-pd~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 341 GGRVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKE----IRQTFSAEGFKCASDWTRVVFS-PDGSYVAAGSADGSVYIW 414 (459)
T ss_pred CcceeeEeeccCCe-EEeeecCCCceeeeeccccc----EEEEeeccccccccccceeEEC-CCCceeeeccCCCcEEEE
Confidence 45899999999995 88899999999999999642 222221 123458889999 888999999999999999
Q ss_pred EcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457 243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF 298 (389)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~ 298 (389)
++.++++...+.... ....|+++.|+|.|. ++++++.++.+.+|
T Consensus 415 ~v~tgKlE~~l~~s~----------s~~aI~s~~W~~sG~--~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 415 SVFTGKLEKVLSLST----------SNAAITSLSWNPSGS--GLLSADKQKAVTLW 458 (459)
T ss_pred EccCceEEEEeccCC----------CCcceEEEEEcCCCc--hhhcccCCcceEec
Confidence 999999998887643 223799999999999 78999999999998
No 86
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.7e-31 Score=206.59 Aligned_cols=277 Identities=15% Similarity=0.156 Sum_probs=223.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
.+.|.++.|+|.+..|++++.||++++|++........++ |..++.+++|.++. .+++|+.||.|+.+|+.++...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~---~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES---TIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc---eEEEeccCceEEEEEecCCcce
Confidence 6889999999999999999999999999999876666666 89999999999764 8999999999999999876654
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (389)
.+..|..+|.|+.+.+..+.+++++.|++|++||.+.......+. ....|.++.... +.|++|+.+..|.+||+
T Consensus 89 -~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~g---~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 89 -QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDVSG---NRLVVGTSDRKVLIYDL 162 (323)
T ss_pred -eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEeccC---CEEEEeecCceEEEEEc
Confidence 566789999999999999999999999999999999877777765 455888888765 48999999999999999
Q ss_pred CCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC----ceeEEeecccccccCCccCCCCCcee
Q 016457 198 GGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG----QNVASFENARSLASDSWTLDDVDYFV 273 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (389)
++..... .......+-.+.++++. |++.=+++++-||.|.+=.+... +....|..|+...... ...-+|.
T Consensus 163 Rn~~~~~--q~reS~lkyqtR~v~~~-pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~---~~~yPVN 236 (323)
T KOG1036|consen 163 RNLDEPF--QRRESSLKYQTRCVALV-PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT---EIIYPVN 236 (323)
T ss_pred ccccchh--hhccccceeEEEEEEEe-cCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc---eEEEEec
Confidence 9543211 22233345678999999 47777899999999888666554 3445566555332211 1235789
Q ss_pred eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec
Q 016457 274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG 348 (389)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~ 348 (389)
+++|+|--+ .++||+.||.|.+||..+.+. +.++. .-...|..+ +|+.||..||.|+
T Consensus 237 ai~Fhp~~~--tfaTgGsDG~V~~Wd~~~rKr------l~q~~-~~~~SI~sl---------sfs~dG~~LAia~ 293 (323)
T KOG1036|consen 237 AIAFHPIHG--TFATGGSDGIVNIWDLFNRKR------LKQLA-KYETSISSL---------SFSMDGSLLAIAS 293 (323)
T ss_pred eeEeccccc--eEEecCCCceEEEccCcchhh------hhhcc-CCCCceEEE---------EeccCCCeEEEEe
Confidence 999999866 789999999999999998765 55554 445678888 9999999999987
No 87
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.6e-30 Score=230.69 Aligned_cols=268 Identities=12% Similarity=0.137 Sum_probs=200.9
Q ss_pred ccccCCCCeEEEEecCc--e-------------eeeeec-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCc------
Q 016457 14 SQSCDNVNSIKRFGLKN--S-------------IQTNFG-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTG------ 70 (389)
Q Consensus 14 ~~s~~~~~~i~~w~~~~--~-------------~~~~~~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~------ 70 (389)
..+++.+.....|+... . ...+.+ .+.|++++|+| ++++|++|+.|++|++||+.++
T Consensus 35 ~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~ 114 (493)
T PTZ00421 35 TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI 114 (493)
T ss_pred cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc
Confidence 34555566666776421 1 112445 78899999999 8889999999999999999764
Q ss_pred -eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEE
Q 016457 71 -QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQ 149 (389)
Q Consensus 71 -~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 149 (389)
+++..+.+|...|.+++|+|++. ++|++++.|++|+|||+.+++.+..+..|...|.+++|+|++..+++++.|+.|+
T Consensus 115 ~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~Ir 193 (493)
T PTZ00421 115 SDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLN 193 (493)
T ss_pred CcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEE
Confidence 34667889999999999999763 5999999999999999999999999999999999999999999999999999999
Q ss_pred EEECcCCceeeeeeecccCC-eeEEEEecCCCCeEEEEe----CCCcEEEEecCCCCCCCccceeeecc-CCceeeEEEe
Q 016457 150 FWDWRNKKQVACLEESHVED-VTQVHFVPNNQNKVVSAS----VDGLICTFDTGGDINDDDLLESVINV-GTSVGKVGFF 223 (389)
Q Consensus 150 iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 223 (389)
+||+++++.+..+. +|... +..+.|.+++. .+++++ .|+.|++||++... ..+.....+ ...+....|+
T Consensus 194 IwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~---~p~~~~~~d~~~~~~~~~~d 268 (493)
T PTZ00421 194 IIDPRDGTIVSSVE-AHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDTRKMA---SPYSTVDLDQSSALFIPFFD 268 (493)
T ss_pred EEECCCCcEEEEEe-cCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeCCCCC---CceeEeccCCCCceEEEEEc
Confidence 99999999988887 77764 45678888875 666544 47899999998532 222222222 2344445566
Q ss_pred cCCCcEEEEEe-cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 224 GETNKHLWCLT-HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 224 ~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
+++.+|++++ .|+.|++||+.+++.+...... +..++..++|.|.-. +-....-..++|.+..
T Consensus 269 -~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-----------s~~~~~g~~~~pk~~----~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 269 -EDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-----------SVEPHKGLCMMPKWS----LDTRKCEIARFYALTY 332 (493)
T ss_pred -CCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-----------CCCCCcceEeccccc----ccccceeeeEEEEecC
Confidence 7777888877 5999999999998877654431 335677788887421 1122223346666544
Q ss_pred C
Q 016457 303 G 303 (389)
Q Consensus 303 ~ 303 (389)
.
T Consensus 333 ~ 333 (493)
T PTZ00421 333 H 333 (493)
T ss_pred C
Confidence 3
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.8e-31 Score=240.48 Aligned_cols=288 Identities=14% Similarity=0.145 Sum_probs=237.2
Q ss_pred CcceEEEeecCCCCeEEEEe--cCCeEEEEeCCC------------ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC
Q 016457 38 DDYVFEIVPKNDWSLMAVSL--STNVVKLYSPVT------------GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD 103 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~--~d~~i~iw~~~~------------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d 103 (389)
...|++++.+|||..+|+|+ .|+.++||+.+. .+.+.....|.+.|+|+.|+||| .+||+|+.|
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG--~~lAsGSDD 90 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG--SYLASGSDD 90 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC--CeEeeccCc
Confidence 56699999999999999999 799999998642 13345567799999999999999 799999999
Q ss_pred CeEEEEEccC------------------CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec
Q 016457 104 GTIRAWDTRS------------------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165 (389)
Q Consensus 104 g~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 165 (389)
+.|.||.... .+.+..+.+|...|..++|+|++..+++++.|++|.+||.++.+.+..+. +
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-G 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee-c
Confidence 9999998762 14678899999999999999999999999999999999999999999998 9
Q ss_pred ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee------ccCCceeeEEEecCCCcEEEEEec----
Q 016457 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI------NVGTSVGKVGFFGETNKHLWCLTH---- 235 (389)
Q Consensus 166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~---- 235 (389)
|.+.|-.+.|.|-|+ +|++-+.|++|++|++.... ....+. ........+.|+ |+|++|++...
T Consensus 170 H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~----i~k~It~pf~~~~~~T~f~RlSWS-PDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWG----IEKSITKPFEESPLTTFFLRLSWS-PDGHHLASPNAVNGG 243 (942)
T ss_pred ccccccceEECCccC-eeeeecCCceEEEEEcccce----eeEeeccchhhCCCcceeeecccC-CCcCeecchhhccCC
Confidence 999999999999997 99999999999999976321 111111 123457889999 88999987643
Q ss_pred CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCC--------CCe-------EEEEEecCCceEEEEEe
Q 016457 236 IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGE--------GEN-------LWVIGGTGAGTVGYFPV 300 (389)
Q Consensus 236 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~-------~~l~~g~~dg~i~i~~~ 300 (389)
-..+.|.+-.+.+.-..+.+ |..++..+.|+|. |.. ..+|+|+.|+.|.||..
T Consensus 244 ~~~~~IieR~tWk~~~~LvG------------H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLVG------------HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred cceeEEEecCCceeeeeeec------------CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 23788888777777777777 7799999999982 111 25789999999999988
Q ss_pred ccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 301 NYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
...+. +..+..--...|.++ +|+|||.-|+.+|.||+|.+..+++.
T Consensus 312 ~~~RP------l~vi~~lf~~SI~Dm---------sWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 312 ALPRP------LFVIHNLFNKSIVDM---------SWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCCCc------hhhhhhhhcCceeee---------eEcCCCCeEEEEecCCeEEEEEcchH
Confidence 65443 333332334778888 99999999999999999999999976
No 89
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-30 Score=226.40 Aligned_cols=323 Identities=12% Similarity=0.155 Sum_probs=258.0
Q ss_pred ccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457 16 SCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS 92 (389)
Q Consensus 16 s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~ 92 (389)
-++.+|.+++||+. +.+.++++ .+.|+++.-+|--..+|+|..+|+|.|+|++.++.+.+++...+.|++++|..||
T Consensus 177 vGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG 256 (910)
T KOG1539|consen 177 VGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG 256 (910)
T ss_pred EeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCC
Confidence 36788999999985 68899999 9999999999999999999999999999999999999999546999999999999
Q ss_pred CCCEEEEEecCCeEEEEEccCCeEEEEEE-cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce---eeeeeecccC
Q 016457 93 TPHVLHSCSSDGTIRAWDTRSFHEVWSVT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ---VACLEESHVE 168 (389)
Q Consensus 93 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~ 168 (389)
. ..+++|+..|.+.+||++..+.+..++ .|.+.|....|.|....+++++.|+.+++|=..++.- +.++..+|..
T Consensus 257 ~-p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 257 N-PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred C-eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence 6 688999999999999999888877766 6789999999998888888888899988885554321 2333348999
Q ss_pred CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC-----------------CC-------ccc-----------------
Q 016457 169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN-----------------DD-------DLL----------------- 207 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------------~~-------~~~----------------- 207 (389)
+..|+.|.......+.+++.|++++.|++..... .. .++
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 9999999844445899999999888877642100 00 000
Q ss_pred --------------------eeeec------cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccccc
Q 016457 208 --------------------ESVIN------VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLAS 261 (389)
Q Consensus 208 --------------------~~~~~------~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 261 (389)
..... ....+.+++.+ ..|++.+.|+..|.|-+|++.+|....+|....
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~---- 490 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP---- 490 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcccCeeecccccCc----
Confidence 00011 12456788888 788999999999999999999998888885211
Q ss_pred CCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc----------------------------------
Q 016457 262 DSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT---------------------------------- 307 (389)
Q Consensus 262 ~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~---------------------------------- 307 (389)
.|..+|++++...-++ .+++++.+|.+++||.....+..
T Consensus 491 -----ah~~~V~gla~D~~n~--~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 491 -----AHKGEVTGLAVDGTNR--LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV 563 (910)
T ss_pred -----cccCceeEEEecCCCc--eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence 1779999999988777 78999999999999987665210
Q ss_pred -cCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 308 -IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 308 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
..+.+..+. ||+..|+++ +|||||++|++++.|++||+||+..+
T Consensus 564 ~t~kvvR~f~-gh~nritd~---------~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 564 VTRKVVREFW-GHGNRITDM---------TFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred hhhhhhHHhh-ccccceeee---------EeCCCCcEEEEeecCCcEEEEeccCc
Confidence 011223333 788888888 99999999999999999999999987
No 90
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-29 Score=189.55 Aligned_cols=293 Identities=13% Similarity=0.102 Sum_probs=227.0
Q ss_pred eeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCC------c-----ee----eeeecCCCCcEEEEEEeCCCCCC
Q 016457 31 SIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT------G-----QY----SGECKGHSSTVNQISFSGPSTPH 95 (389)
Q Consensus 31 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~------~-----~~----~~~~~~~~~~v~~i~~~~~~~~~ 95 (389)
.+..+....+|.+++|+|.|.+.|+|+...+.+|..... + ++ .+.-+.|.+.|.|.+|+|.+ +
T Consensus 25 ~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g--e 102 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG--E 102 (350)
T ss_pred EEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc--C
Confidence 344455578999999999999999999999998875321 1 11 11224588999999999999 7
Q ss_pred EEEEEecCCeEEEEEccCCeE-----EEEEEcCCCCeEEEEEeC---CCCeEEEeec--CCeEEEEECcCCceeeeeeec
Q 016457 96 VLHSCSSDGTIRAWDTRSFHE-----VWSVTAGSQEIFCFSFGG---STDYLLAAGC--GSQIQFWDWRNKKQVACLEES 165 (389)
Q Consensus 96 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~---~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~ 165 (389)
+|++|+.|++|++.-.+...+ -..|..|.+.|..++|-. .+..+++++. |..|++-|...++..+.+. +
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-g 181 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-G 181 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-C
Confidence 999999999999976653322 245778899999999963 2344555443 7788888999999999998 9
Q ss_pred ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee----c---cCCceeeEEEecCCCcEEEEEecCCc
Q 016457 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI----N---VGTSVGKVGFFGETNKHLWCLTHIET 238 (389)
Q Consensus 166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~---~~~~i~~~~~~~~~~~~l~~~~~d~~ 238 (389)
|.+-|.++-- -++ .++++|+.|.+|++||++-. ..+..+. . ..+.|.+++.. |.+.+|++|-.|..
T Consensus 182 htghilalys-wn~-~m~~sgsqdktirfwdlrv~----~~v~~l~~~~~~~glessavaav~vd-psgrll~sg~~dss 254 (350)
T KOG0641|consen 182 HTGHILALYS-WNG-AMFASGSQDKTIRFWDLRVN----SCVNTLDNDFHDGGLESSAVAAVAVD-PSGRLLASGHADSS 254 (350)
T ss_pred CcccEEEEEE-ecC-cEEEccCCCceEEEEeeecc----ceeeeccCcccCCCcccceeEEEEEC-CCcceeeeccCCCc
Confidence 9999988742 334 49999999999999999943 2232221 1 12578899998 78999999999999
Q ss_pred EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecc
Q 016457 239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGG 318 (389)
Q Consensus 239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 318 (389)
..+||++.++.++.|.. |...|.++.|+|... |+++++.|..|++-|+...-...+ ++... ..
T Consensus 255 c~lydirg~r~iq~f~p------------hsadir~vrfsp~a~--yllt~syd~~ikltdlqgdla~el--~~~vv-~e 317 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQRFHP------------HSADIRCVRFSPGAH--YLLTCSYDMKIKLTDLQGDLAHEL--PIMVV-AE 317 (350)
T ss_pred eEEEEeeCCceeeeeCC------------CccceeEEEeCCCce--EEEEecccceEEEeecccchhhcC--ceEEE-Ee
Confidence 99999999999999986 779999999999777 999999999999999975422111 12222 35
Q ss_pred cceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457 319 HTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 319 h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~ 359 (389)
|...+..+ .|.|..--+++.+.|.++.+|-++
T Consensus 318 hkdk~i~~---------rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQC---------RWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEE---------EecCccceeeeccCcceEEEeccC
Confidence 77666666 788888778999999999999875
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-30 Score=204.02 Aligned_cols=247 Identities=16% Similarity=0.193 Sum_probs=203.4
Q ss_pred eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC--eEEEeecCCeEE
Q 016457 72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD--YLLAAGCGSQIQ 149 (389)
Q Consensus 72 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~ 149 (389)
++..+..|.++|++++.+ + .++++|+.|-+|+|||+++...+..+-.|.+.|+++.|.++-. .|++++.||.|.
T Consensus 35 ~lF~~~aH~~sitavAVs--~--~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--G--PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred ccccccccccceeEEEec--c--eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 356678899999999995 4 6999999999999999999999999999999999999997765 899999999999
Q ss_pred EEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcE
Q 016457 150 FWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKH 229 (389)
Q Consensus 150 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 229 (389)
+|+....+.+.+++ +|...|+.++.+|.++ +.++.+.|+.++.||+-.+.. .........-..+.|+ +.|.+
T Consensus 111 iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~-----a~v~~L~~~at~v~w~-~~Gd~ 182 (362)
T KOG0294|consen 111 IWRVGSWELLKSLK-AHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRV-----AFVLNLKNKATLVSWS-PQGDH 182 (362)
T ss_pred EEEcCCeEEeeeec-ccccccceeEecCCCc-eEEEEcCCceeeeehhhcCcc-----ceeeccCCcceeeEEc-CCCCE
Confidence 99999999999999 9999999999999997 889999999999999986642 2222223334459999 77787
Q ss_pred EEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccC
Q 016457 230 LWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIG 309 (389)
Q Consensus 230 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~ 309 (389)
++.+..+ .|-+|.+.+......+.. +..+.++.|-.. . +|++|..|+.|.+||.+....
T Consensus 183 F~v~~~~-~i~i~q~d~A~v~~~i~~-------------~~r~l~~~~l~~-~--~L~vG~d~~~i~~~D~ds~~~---- 241 (362)
T KOG0294|consen 183 FVVSGRN-KIDIYQLDNASVFREIEN-------------PKRILCATFLDG-S--ELLVGGDNEWISLKDTDSDTP---- 241 (362)
T ss_pred EEEEecc-EEEEEecccHhHhhhhhc-------------cccceeeeecCC-c--eEEEecCCceEEEeccCCCcc----
Confidence 7777765 577999887776665553 244666666653 3 789999999999999998554
Q ss_pred CCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 310 PPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 310 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
+..+. +|...|.++++ --.|++.||+|+|.||.|++||++-.
T Consensus 242 --~~~~~-AH~~RVK~i~~-------~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 242 --LTEFL-AHENRVKDIAS-------YTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred --ceeee-cchhheeeeEE-------EecCCceEEEEeccCceEEEEEcccc
Confidence 56665 99999999931 12577899999999999999999865
No 92
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-32 Score=216.39 Aligned_cols=269 Identities=17% Similarity=0.219 Sum_probs=226.3
Q ss_pred cCCCCCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcE
Q 016457 7 ESQSQPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTV 83 (389)
Q Consensus 7 ~~~~~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v 83 (389)
++......|+++.||.|++||+. +++.++.. .+.|..+++.. ..++++++|.+|+.|.++ +.++.++.+ ...+
T Consensus 75 hp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg-~s~~ 150 (433)
T KOG0268|consen 75 HPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILG-KSVY 150 (433)
T ss_pred CcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeec-cccc
Confidence 44445578999999999999996 47778887 88999999987 578888889999999987 457777764 4567
Q ss_pred EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeee
Q 016457 84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACL 162 (389)
Q Consensus 84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~ 162 (389)
..|.-+..+ ..++|+|.+ |.|||.....++.++.-....|.++.|+|....+++++ +|+.|.+||+++..++..+
T Consensus 151 ~gIdh~~~~--~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV 226 (433)
T KOG0268|consen 151 LGIDHHRKN--SVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV 226 (433)
T ss_pred ccccccccc--ccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee
Confidence 777766555 689998875 99999999999999998889999999999888777766 6999999999999999887
Q ss_pred eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457 163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIW 242 (389)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~ 242 (389)
. ....-+.|+|+|+. ..|++|++|..++.||++. ...++....+|.+.|.++.|+ |.|+-+++|+.|.+|+||
T Consensus 227 i--~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~---l~~p~~v~~dhvsAV~dVdfs-ptG~EfvsgsyDksIRIf 299 (433)
T KOG0268|consen 227 I--LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRN---LSRPLNVHKDHVSAVMDVDFS-PTGQEFVSGSYDKSIRIF 299 (433)
T ss_pred e--eeccccceecCccc-cceeeccccccceehhhhh---hcccchhhcccceeEEEeccC-CCcchhccccccceEEEe
Confidence 6 45667889999966 5899999999999999993 457777888999999999999 788999999999999999
Q ss_pred EcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457 243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG 303 (389)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~ 303 (389)
..+.+.....+-.- ....|.++.|+.|.+ |+++||.|+.|++|.....
T Consensus 300 ~~~~~~SRdiYhtk-----------RMq~V~~Vk~S~Dsk--yi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 300 PVNHGHSRDIYHTK-----------RMQHVFCVKYSMDSK--YIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ecCCCcchhhhhHh-----------hhheeeEEEEecccc--EEEecCCCcceeeeecchh
Confidence 99887655544332 236799999999999 9999999999999986543
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-32 Score=230.56 Aligned_cols=281 Identities=15% Similarity=0.233 Sum_probs=229.0
Q ss_pred EEeec-CCCCeEEEEecCCeEEEEeCCCc--e----eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-
Q 016457 43 EIVPK-NDWSLMAVSLSTNVVKLYSPVTG--Q----YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF- 114 (389)
Q Consensus 43 ~~~~~-~~~~~l~~~~~d~~i~iw~~~~~--~----~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~- 114 (389)
++..+ |.+++|++|+.||.|++|++... + .+..++.|.+.|++++...++ +.|++++.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~--~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG--KTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC--CceEEecCCceEEEeecccCc
Confidence 34444 45578999999999999997542 1 366788899999999999888 79999999999999999877
Q ss_pred -eEEEEEEcCCCCeEEEEE-eCCCCeEEEeecCCeEEEEECcCC--ceeeeee--------ecccCCeeEEEEecCCCCe
Q 016457 115 -HEVWSVTAGSQEIFCFSF-GGSTDYLLAAGCGSQIQFWDWRNK--KQVACLE--------ESHVEDVTQVHFVPNNQNK 182 (389)
Q Consensus 115 -~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~--------~~~~~~v~~~~~~~~~~~~ 182 (389)
-++.++..|.+.|.|+++ -++...+++||.|+.|.+||+.++ +.+.++. .++..+|++++.++.+ ..
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TI 185 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eE
Confidence 678889999999999999 656666777777999999999977 2232222 2678899999999999 49
Q ss_pred EEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccC
Q 016457 183 VVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASD 262 (389)
Q Consensus 183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 262 (389)
|++|+..+.+++||.++. +.+..+.+|...|..+..+ ++|..+++++.||+|++||+...+++.++..
T Consensus 186 ivsGgtek~lr~wDprt~----~kimkLrGHTdNVr~ll~~-dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v------- 253 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTC----KKIMKLRGHTDNVRVLLVN-DDGTRLLSASSDGTIRLWDLGQQRCLATYIV------- 253 (735)
T ss_pred EEecCcccceEEeccccc----cceeeeeccccceEEEEEc-CCCCeEeecCCCceEEeeeccccceeeeEEe-------
Confidence 999999999999999965 4567777999999999999 8999999999999999999999999999987
Q ss_pred CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce
Q 016457 263 SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI 342 (389)
Q Consensus 263 ~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~ 342 (389)
|...++++..+|+-. ++.+|+.||.|+.=|+.+... ...+. ....+|..+ ..+.+..
T Consensus 254 -----H~e~VWaL~~~~sf~--~vYsG~rd~~i~~Tdl~n~~~------~tlic-k~daPv~~l---------~~~~~~~ 310 (735)
T KOG0308|consen 254 -----HKEGVWALQSSPSFT--HVYSGGRDGNIYRTDLRNPAK------STLIC-KEDAPVLKL---------HLHEHDN 310 (735)
T ss_pred -----ccCceEEEeeCCCcc--eEEecCCCCcEEecccCCchh------heEee-cCCCchhhh---------hhccccC
Confidence 668899999999888 889999999999999988543 12222 344556666 4443333
Q ss_pred eEEEecCCCeEEEEeccCC
Q 016457 343 FGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 343 ~l~s~~~dg~v~iW~~~~~ 361 (389)
-+.+++.|+.|+-|.....
T Consensus 311 ~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 311 SVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred CceeeeccccceecCCccc
Confidence 3366777888888887644
No 94
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=5.9e-31 Score=215.69 Aligned_cols=262 Identities=16% Similarity=0.129 Sum_probs=207.1
Q ss_pred eecCcceEEEeecCCC-CeEEEEecCCeEEEEeCCCc----------eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC
Q 016457 35 NFGDDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTG----------QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD 103 (389)
Q Consensus 35 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d 103 (389)
+.+.+.|+.+.+-|+. .++|+++..+.|.|||..+- .+-..+.+|.+.=.+++|++... -.|++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~-g~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE-GTLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-eeEeeccCC
Confidence 3447889999999977 56777788999999997542 12236788998888899998765 589999999
Q ss_pred CeEEEEEccCC-------eEEEEEEcCCCCeEEEEEeCCCCeEE-EeecCCeEEEEECcC--CceeeeeeecccCCeeEE
Q 016457 104 GTIRAWDTRSF-------HEVWSVTAGSQEIFCFSFGGSTDYLL-AAGCGSQIQFWDWRN--KKQVACLEESHVEDVTQV 173 (389)
Q Consensus 104 g~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~ 173 (389)
++|++||+... .+...+.+|...|..++|++....++ +++.|+.+.|||+|+ .++..... +|...|.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEE
Confidence 99999999743 34567889999999999998766555 456699999999994 45555565 899999999
Q ss_pred EEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEe
Q 016457 174 HFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF 253 (389)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 253 (389)
+|+|.+.++||+|+.|++|.+||+|. ...++..+..|...|..|.|+|.....|++++.|+.+.+||+..-...+.-
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRn---L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRN---LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechh---cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 99999988999999999999999994 456889999999999999999888899999999999999998642221110
Q ss_pred ec-ccccccC-CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 254 EN-ARSLASD-SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 254 ~~-~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
.. ....+.. --.-+|...|..+.|+|+... .|++.++|+.+.||.+..
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW-~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW-TIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCe-EEEEecCCceEEEeeccc
Confidence 00 0000000 001138899999999999874 478899999999999874
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-31 Score=225.38 Aligned_cols=324 Identities=15% Similarity=0.194 Sum_probs=249.4
Q ss_pred ccccCCCCeEEEEecCc--------eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc--eeeeeecCCCCc
Q 016457 14 SQSCDNVNSIKRFGLKN--------SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG--QYSGECKGHSST 82 (389)
Q Consensus 14 ~~s~~~~~~i~~w~~~~--------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~ 82 (389)
.-|++.||.|++|+..+ .+..++. .+.|+.++...+++.|++++.|.+|++|+...+ -++.++..|.+-
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY 119 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY 119 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch
Confidence 67899999999999853 2344555 899999999999999999999999999999877 567788899999
Q ss_pred EEEEEE-eCCCCCCEEEEEecCCeEEEEEccCC--eEEEE--------EE-cCCCCeEEEEEeCCCCeEEEeecCCeEEE
Q 016457 83 VNQISF-SGPSTPHVLHSCSSDGTIRAWDTRSF--HEVWS--------VT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQF 150 (389)
Q Consensus 83 v~~i~~-~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~--------~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 150 (389)
|.|+++ .++. .++||||.|+.|.+||++++ +.+.+ +. ++...|.+++.++.+..+++|+..+.|++
T Consensus 120 Vkcla~~ak~~--~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 120 VKCLAYIAKNN--ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred heeeeecccCc--eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence 999999 6666 79999999999999999977 22222 22 66889999999988877777788999999
Q ss_pred EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457 151 WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL 230 (389)
Q Consensus 151 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 230 (389)
||.++.+.+..+. +|...|.++..+++|. .+++++.||+|++||+. .+.++..+..|...|.++..+ ++-..+
T Consensus 198 wDprt~~kimkLr-GHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~e~VWaL~~~-~sf~~v 270 (735)
T KOG0308|consen 198 WDPRTCKKIMKLR-GHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLG----QQRCLATYIVHKEGVWALQSS-PSFTHV 270 (735)
T ss_pred eccccccceeeee-ccccceEEEEEcCCCC-eEeecCCCceEEeeecc----ccceeeeEEeccCceEEEeeC-CCcceE
Confidence 9999999999999 9999999999999995 99999999999999999 567888899999999999998 788899
Q ss_pred EEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc-cccC
Q 016457 231 WCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA-ATIG 309 (389)
Q Consensus 231 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-~~~~ 309 (389)
++|+.||.|..=|+++......+.. ...++..+..+...+.+ -+++.|+.|+-|....... ...+
T Consensus 271 YsG~rd~~i~~Tdl~n~~~~tlick------------~daPv~~l~~~~~~~~~--WvtTtds~I~rW~~~~~~~l~~s~ 336 (735)
T KOG0308|consen 271 YSGGRDGNIYRTDLRNPAKSTLICK------------EDAPVLKLHLHEHDNSV--WVTTTDSSIKRWKLEPDIALSVSG 336 (735)
T ss_pred EecCCCCcEEecccCCchhheEeec------------CCCchhhhhhccccCCc--eeeeccccceecCCccccccccCC
Confidence 9999999999999998533333322 33667777777665643 5666788999997653221 0000
Q ss_pred CCeEEEecccceeeeec-c-C---CC---cccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 310 PPEAVLVGGHTAVVRSV-L-P---MP---SVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 310 ~~~~~~~~~h~~~v~~~-~-~---~~---~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
.+..... .-...+.+. . | .+ .+..++.-.|.++++|=...|.+.+||+-..
T Consensus 337 ~~~~~~T-~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 337 DLDFFST-DSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILAC 395 (735)
T ss_pred CCCcccc-cCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeee
Confidence 0000000 000011110 0 0 01 1112245567889999999999999999765
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.1e-29 Score=197.70 Aligned_cols=256 Identities=14% Similarity=0.224 Sum_probs=206.3
Q ss_pred eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeE
Q 016457 71 QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQI 148 (389)
Q Consensus 71 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i 148 (389)
++.+.+......|+++.|+++| +++++++.|.+++|||..+++.++++..++..+..++|......++.++. |.+|
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G--~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDG--LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccCCCceeEEEecCCC--CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 3445555567889999999999 79999999999999999999999999999899999999878888888877 8999
Q ss_pred EEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457 149 QFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK 228 (389)
Q Consensus 149 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (389)
+..++.+++.++.+. +|...|++|+.+|-+. .+++++.|++|++||++.. .+...+... .-..++|. |.|-
T Consensus 83 ryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~----~cqg~l~~~--~~pi~AfD-p~GL 153 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVK----KCQGLLNLS--GRPIAAFD-PEGL 153 (311)
T ss_pred EEEEeecCceEEEcC-CCCceEEEEEecCCCC-eEEecccCCeEEeeEecCC----CCceEEecC--CCcceeEC-CCCc
Confidence 999999999999999 9999999999999995 9999999999999999943 222222222 23346777 7888
Q ss_pred EEEEEecCCcEEEEEcCCC--ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcc
Q 016457 229 HLWCLTHIETLSIWDWKDG--QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAA 306 (389)
Q Consensus 229 ~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~ 306 (389)
++|++...+.|++||++.. .+..++.-.. +.......+.|+|||+ +|+.++..+.+++.|.-+|..
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---------~~~~ew~~l~FS~dGK--~iLlsT~~s~~~~lDAf~G~~- 221 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITD---------NDEAEWTDLEFSPDGK--SILLSTNASFIYLLDAFDGTV- 221 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCC---------CCccceeeeEEcCCCC--EEEEEeCCCcEEEEEccCCcE-
Confidence 8888888889999999864 3444444321 1346788999999999 888888999999999988775
Q ss_pred ccCCCeEEEeccccee--eeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcc
Q 016457 307 TIGPPEAVLVGGHTAV--VRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSE 363 (389)
Q Consensus 307 ~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~ 363 (389)
+..+. ++... +. +.+.|+||++++++|+.||+|.+|+++.+.+
T Consensus 222 -----~~tfs-~~~~~~~~~--------~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 222 -----KSTFS-GYPNAGNLP--------LSATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred -----eeeEe-eccCCCCcc--------eeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 34443 33311 11 1237999999999999999999999987743
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=8.4e-31 Score=200.59 Aligned_cols=267 Identities=15% Similarity=0.150 Sum_probs=215.5
Q ss_pred CccccCCCCeEEEEec--Cceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457 13 KSQSCDNVNSIKRFGL--KNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS 89 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~ 89 (389)
..-+|+.|.++.+|-. ++.+-++.| .++|+|++.+-+.+.+++|+.|.+++|||+++|+.+..++ ...+|..+.|+
T Consensus 24 LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~ 102 (327)
T KOG0643|consen 24 LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFS 102 (327)
T ss_pred EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeec
Confidence 3568999999999976 468888999 9999999999999999999999999999999999999998 56789999999
Q ss_pred CCCCCCEEEEEe-----cCCeEEEEEcc-------CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457 90 GPSTPHVLHSCS-----SDGTIRAWDTR-------SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK 157 (389)
Q Consensus 90 ~~~~~~~l~s~~-----~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 157 (389)
+++ ++++... ..+.|.++|++ ..++...+..+.+.++.+-|.|-+..|+++..||.|.+||+++++
T Consensus 103 ~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 103 FGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred cCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence 998 4555543 34579999998 456688888889999999999999999999999999999999986
Q ss_pred eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC
Q 016457 158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE 237 (389)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 237 (389)
.+..-...|...|+.|.++++.. ++++++.|.+-++||.++-. +........+|++.+++|- .+.++.++...
T Consensus 181 ~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~-----v~Kty~te~PvN~aaisP~-~d~VilgGGqe 253 (327)
T KOG0643|consen 181 ELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLE-----VLKTYTTERPVNTAAISPL-LDHVILGGGQE 253 (327)
T ss_pred eeeechhhhccccccccccCCcc-eEEecccCccceeeecccee-----eEEEeeecccccceecccc-cceEEecCCce
Confidence 65444347999999999999995 99999999999999999532 4444557789999999954 44555554432
Q ss_pred cE--EEEEcCCCc------------eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457 238 TL--SIWDWKDGQ------------NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG 303 (389)
Q Consensus 238 ~i--~i~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~ 303 (389)
.. .-=+.+.++ .+..+.+ |-++|++++|+|+|+ ..++|++||.|++..++..
T Consensus 254 A~dVTTT~~r~GKFEArFyh~i~eEEigrvkG------------HFGPINsvAfhPdGk--sYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 254 AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG------------HFGPINSVAFHPDGK--SYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred eeeeeeecccccchhhhHHHHHHHHHhccccc------------cccCcceeEECCCCc--ccccCCCCceEEEEEeccc
Confidence 22 111122222 2223333 889999999999999 6699999999999877643
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=9.5e-30 Score=194.20 Aligned_cols=255 Identities=14% Similarity=0.176 Sum_probs=219.5
Q ss_pred CCccccCCCCeEEEEecCcee--ee--eec-CcceEEEeecCC-CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE
Q 016457 12 PKSQSCDNVNSIKRFGLKNSI--QT--NFG-DDYVFEIVPKND-WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ 85 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~~~~--~~--~~~-~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~ 85 (389)
.+.++++.|+++++|++...- .. ..+ .+.|-.++|+|. ..+|++++.|.+|++||+..+++........+.| .
T Consensus 33 ~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~ 111 (313)
T KOG1407|consen 33 TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-N 111 (313)
T ss_pred ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-E
Confidence 367889999999999986431 11 223 678889999874 4789999999999999999999998887655555 4
Q ss_pred EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec
Q 016457 86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165 (389)
Q Consensus 86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 165 (389)
+.|+|++ ++++.++.|..|.+.|.++.+.+...+. ...+..++|+-++..++.....|.|.|.....-+++++++ +
T Consensus 112 i~wsp~g--~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-A 187 (313)
T KOG1407|consen 112 ITWSPDG--EYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-A 187 (313)
T ss_pred EEEcCCC--CEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc-c
Confidence 8899999 7999999999999999999888877765 4678889998666777777778999999999999999999 9
Q ss_pred ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK 245 (389)
Q Consensus 166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 245 (389)
|.....||.|+|+|+ +|++|+.|..+.+||+. +..+.+.+..+.-+|..+.|+ .++++|++++.|..|-|=+++
T Consensus 188 H~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~----ELiC~R~isRldwpVRTlSFS-~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 188 HPSNCICIEFDPDGR-YFATGSADALVSLWDVD----ELICERCISRLDWPVRTLSFS-HDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred CCcceEEEEECCCCc-eEeeccccceeeccChh----HhhhheeeccccCceEEEEec-cCcceeeccCccceEEeEecc
Confidence 999999999999997 99999999999999999 556778888899999999999 899999999999999999999
Q ss_pred CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC
Q 016457 246 DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA 292 (389)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d 292 (389)
+|..+..+. +.++...++|+|... +||-+..|
T Consensus 262 tGd~~~eI~-------------~~~~t~tVAWHPk~~--LLAyA~dd 293 (313)
T KOG1407|consen 262 TGDRVWEIP-------------CEGPTFTVAWHPKRP--LLAYACDD 293 (313)
T ss_pred cCCeEEEee-------------ccCCceeEEecCCCc--eeeEEecC
Confidence 999998887 668899999999876 56554443
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=1.3e-30 Score=216.72 Aligned_cols=267 Identities=16% Similarity=0.214 Sum_probs=211.2
Q ss_pred CccccCCCCeEEEEecCc------eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeee----------
Q 016457 13 KSQSCDNVNSIKRFGLKN------SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG---------- 74 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~------~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~---------- 74 (389)
+..+++.|-+|++||... ..+.+.. ...|++++|++.|..|++.+.....+|+|-...+.+.
T Consensus 181 R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~D 260 (641)
T KOG0772|consen 181 RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRD 260 (641)
T ss_pred eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhh
Confidence 567899999999999863 2333333 7789999999999988888888999999954322221
Q ss_pred --eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe-EEEEEEc-----CCCCeEEEEEeCCCCeEEEeecCC
Q 016457 75 --ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH-EVWSVTA-----GSQEIFCFSFGGSTDYLLAAGCGS 146 (389)
Q Consensus 75 --~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~ 146 (389)
..+||...++|.+|+|... +.++|++.||++||||+...+ .+..++. ..-+++.++|+|++..+++++.||
T Consensus 261 m~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG 339 (641)
T KOG0772|consen 261 MYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG 339 (641)
T ss_pred hhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence 2368999999999999987 789999999999999998643 3333332 256789999999999999999999
Q ss_pred eEEEEECcCC--ceeeeeeecccC--CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec--cCCceeeE
Q 016457 147 QIQFWDWRNK--KQVACLEESHVE--DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN--VGTSVGKV 220 (389)
Q Consensus 147 ~i~iwd~~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~i~~~ 220 (389)
.|.+|+.+.. .+...+..+|.. .|+||.|+++|. +|++-+.|+++++||++.. .+++....+ ...+-+.+
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~---kkpL~~~tgL~t~~~~tdc 415 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQF---KKPLNVRTGLPTPFPGTDC 415 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeecccc---ccchhhhcCCCccCCCCcc
Confidence 9999998643 344555567877 899999999995 9999999999999999943 344444333 33456789
Q ss_pred EEecCCCcEEEEEec------CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce
Q 016457 221 GFFGETNKHLWCLTH------IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT 294 (389)
Q Consensus 221 ~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~ 294 (389)
+|+ |+.+++++|+. .+.+.+||..+...+..+.. ....|..+.|+|.-+ -|+.|+.||.
T Consensus 416 ~FS-Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i------------~~aSvv~~~WhpkLN--Qi~~gsgdG~ 480 (641)
T KOG0772|consen 416 CFS-PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI------------STASVVRCLWHPKLN--QIFAGSGDGT 480 (641)
T ss_pred ccC-CCceEEEecccccCCCCCceEEEEeccceeeEEEecC------------CCceEEEEeecchhh--heeeecCCCc
Confidence 999 67788888864 36899999999888888775 337899999999877 5678889999
Q ss_pred EEEEE
Q 016457 295 VGYFP 299 (389)
Q Consensus 295 i~i~~ 299 (389)
++||=
T Consensus 481 ~~vyY 485 (641)
T KOG0772|consen 481 AHVYY 485 (641)
T ss_pred eEEEE
Confidence 99873
No 100
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.1e-30 Score=200.79 Aligned_cols=242 Identities=16% Similarity=0.195 Sum_probs=202.5
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
.++|++++.+ +.++|+|+.|.+|+|||+.+...+..+..|.+.|+++.|.+..+...|++|+.||.|.+|+......+
T Consensus 43 ~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 43 AGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL 120 (362)
T ss_pred ccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe
Confidence 7889999984 68999999999999999999999999999999999999998874458999999999999999999999
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (389)
.+++.|.+.|+.++.+|.+..-++.+.|+.+++||+-+++.-..+. -...-+.+.|+|.|. +++.+..+ .|-+|.+
T Consensus 121 ~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~--L~~~at~v~w~~~Gd-~F~v~~~~-~i~i~q~ 196 (362)
T KOG0294|consen 121 KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN--LKNKATLVSWSPQGD-HFVVSGRN-KIDIYQL 196 (362)
T ss_pred eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec--cCCcceeeEEcCCCC-EEEEEecc-EEEEEec
Confidence 9999999999999999999999999999999999999988766665 223345599999996 77777755 6889988
Q ss_pred CCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecc
Q 016457 198 GGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHY 277 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 277 (389)
.+. . +......+..+.++.| .++..|++|+.|+.|.+||..+..+...+.. |...|-++.+
T Consensus 197 d~A----~-v~~~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A------------H~~RVK~i~~ 257 (362)
T KOG0294|consen 197 DNA----S-VFREIENPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFLA------------HENRVKDIAS 257 (362)
T ss_pred ccH----h-Hhhhhhccccceeeee--cCCceEEEecCCceEEEeccCCCccceeeec------------chhheeeeEE
Confidence 842 1 2222222345666666 4667899999999999999999888888887 7799999885
Q ss_pred cCCCCeEEEEEecCCceEEEEEeccCC
Q 016457 278 PGEGENLWVIGGTGAGTVGYFPVNYGG 304 (389)
Q Consensus 278 ~~~~~~~~l~~g~~dg~i~i~~~~~~~ 304 (389)
-.+...-||++.+.||.|++||++...
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EecCCceEEEEeccCceEEEEEccccc
Confidence 544333399999999999999998763
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=2.6e-30 Score=211.93 Aligned_cols=258 Identities=19% Similarity=0.272 Sum_probs=211.3
Q ss_pred CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe----------EEEEEEcCCCCeEEEEEeCCC-CeEEEeecCCe
Q 016457 79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH----------EVWSVTAGSQEIFCFSFGGST-DYLLAAGCGSQ 147 (389)
Q Consensus 79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~ 147 (389)
|.+.|+.+.+.|... .++++.+..+.|.|||..+.. +-..+.+|...-.+++|++.. ..+++++.|+.
T Consensus 123 h~gEVnRaRymPQnp-~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNP-NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred CCccchhhhhCCCCC-cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 888999999999874 788889999999999986421 223788898778889998764 56777778999
Q ss_pred EEEEECcCCc-------eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeE
Q 016457 148 IQFWDWRNKK-------QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKV 220 (389)
Q Consensus 148 i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 220 (389)
|++||+.... +...+. +|...|..++|++...++|++++.|+.+.|||+|++ ..+......+|...+.++
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred EEEEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCceeEE
Confidence 9999997542 234454 899999999999998889999999999999999973 456677778899999999
Q ss_pred EEecCCCcEEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 221 GFFGETNKHLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 221 ~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
+|+|.++.+||+|+.|++|.+||+++. ++++++.+ |...|..+.|+|+... .|++++.|+.+.|||
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~------------H~dev~~V~WSPh~et-vLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG------------HEDEVFQVEWSPHNET-VLASSGTDRRLNVWD 345 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhcccCceeccC------------CCcceEEEEeCCCCCc-eeEecccCCcEEEEe
Confidence 999989999999999999999999985 56777776 7799999999998776 589999999999999
Q ss_pred eccCCcc------ccCCC-eEEEecccceeeeeccCCCcccCCCCCCCcee-EEEecCCCeEEEEeccCCc
Q 016457 300 VNYGGAA------TIGPP-EAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIF-GWTGGEDGRLCCWLSDDSS 362 (389)
Q Consensus 300 ~~~~~~~------~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~-l~s~~~dg~v~iW~~~~~~ 362 (389)
+..-... ..+++ +..+-.||...|.++ .|+|...+ |+|.++|+.+.||+.....
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df---------sWnp~ePW~I~SvaeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF---------SWNPNEPWTIASVAEDNILQIWQMAENI 407 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccc---------cCCCCCCeEEEEecCCceEEEeeccccc
Confidence 9753321 11222 223446999999999 88888765 7888999999999998663
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=7.2e-30 Score=219.45 Aligned_cols=280 Identities=17% Similarity=0.271 Sum_probs=229.8
Q ss_pred eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee--eeecCCCCcEEE-EEEeCCCCCCEEEEEecCCeEE
Q 016457 32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS--GECKGHSSTVNQ-ISFSGPSTPHVLHSCSSDGTIR 107 (389)
Q Consensus 32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~v~~-i~~~~~~~~~~l~s~~~dg~i~ 107 (389)
...+.+ +..|..+++.+.. .+++++.||++++|+-..++.+ ..+.+|.+.|.. +++.+... ..+++|+.|.+|.
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~-~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDK-GRLVVGGMDTTII 84 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccC-cceEeecccceEE
Confidence 345566 7778888877655 7899999999999997655544 346778888877 88876321 4799999999999
Q ss_pred EEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457 108 AWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS 187 (389)
Q Consensus 108 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 187 (389)
+|.+.+..++.++++|+..|.|+... ....+++++.|.++++|-. +++...+. +|+..|.+++.-|++ .++||+
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~-~~~~~iSgSWD~TakvW~~--~~l~~~l~-gH~asVWAv~~l~e~--~~vTgs 158 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIG-EDGTLISGSWDSTAKVWRI--GELVYSLQ-GHTASVWAVASLPEN--TYVTGS 158 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecC-CcCceEecccccceEEecc--hhhhcccC-CcchheeeeeecCCC--cEEecc
Confidence 99999999999999999999999977 4455899999999999974 55666677 999999999999986 799999
Q ss_pred CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCC
Q 016457 188 VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLD 267 (389)
Q Consensus 188 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 267 (389)
.|.+|++|.-. ..+..+.+|.+.|+.+++. ++ ..+++++.||.|++|++ +++++..+.+
T Consensus 159 aDKtIklWk~~------~~l~tf~gHtD~VRgL~vl-~~-~~flScsNDg~Ir~w~~-~ge~l~~~~g------------ 217 (745)
T KOG0301|consen 159 ADKTIKLWKGG------TLLKTFSGHTDCVRGLAVL-DD-SHFLSCSNDGSIRLWDL-DGEVLLEMHG------------ 217 (745)
T ss_pred CcceeeeccCC------chhhhhccchhheeeeEEe-cC-CCeEeecCCceEEEEec-cCceeeeeec------------
Confidence 99999999876 5688889999999999998 33 36899999999999999 7888888887
Q ss_pred CCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe
Q 016457 268 DVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG 347 (389)
Q Consensus 268 ~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~ 347 (389)
|...+.++...++++ .++++++|++++||+... . .+.+. -....|+++ .+-++|.. ++|
T Consensus 218 htn~vYsis~~~~~~--~Ivs~gEDrtlriW~~~e--~------~q~I~-lPttsiWsa---------~~L~NgDI-vvg 276 (745)
T KOG0301|consen 218 HTNFVYSISMALSDG--LIVSTGEDRTLRIWKKDE--C------VQVIT-LPTTSIWSA---------KVLLNGDI-VVG 276 (745)
T ss_pred cceEEEEEEecCCCC--eEEEecCCceEEEeecCc--e------EEEEe-cCccceEEE---------EEeeCCCE-EEe
Confidence 779999999777777 889999999999998873 2 34443 334467777 44455553 788
Q ss_pred cCCCeEEEEeccCC
Q 016457 348 GEDGRLCCWLSDDS 361 (389)
Q Consensus 348 ~~dg~v~iW~~~~~ 361 (389)
+.||.||||..+..
T Consensus 277 ~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 277 GSDGRVRVFTVDKD 290 (745)
T ss_pred ccCceEEEEEeccc
Confidence 88999999999855
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=206.38 Aligned_cols=266 Identities=14% Similarity=0.158 Sum_probs=227.0
Q ss_pred CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457 12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF 88 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~ 88 (389)
+...+++.|..+.++|.. +.+.++.| ...|+.+.|+|+...+++++.|..|+||.............|.++|+.+..
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~ 311 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL 311 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee
Confidence 567788899899999874 57788888 889999999999999999999999999999888888888899999999999
Q ss_pred eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC--CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457 89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG--SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH 166 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (389)
+|.+ +||++++.||+..+.|++++..+...... .-.+++.+|+|+|-.+.++..|+.|+|||+.++..+..|. +|
T Consensus 312 h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-gh 388 (506)
T KOG0289|consen 312 HPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GH 388 (506)
T ss_pred ccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-CC
Confidence 9999 79999999999999999999988776652 3568999999998888888889999999999999999998 89
Q ss_pred cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457 167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK 245 (389)
Q Consensus 167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 245 (389)
.++|..++|+.+| ++|++++.|+.|++||+|... ....+. .....+.++.|. ..|.+|+.++.|=.|++++-.
T Consensus 389 t~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~----n~kt~~l~~~~~v~s~~fD-~SGt~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 389 TGPVKAISFSENG-YWLATAADDGSVKLWDLRKLK----NFKTIQLDEKKEVNSLSFD-QSGTYLGIAGSDLQVYICKKK 462 (506)
T ss_pred CCceeEEEeccCc-eEEEEEecCCeEEEEEehhhc----ccceeeccccccceeEEEc-CCCCeEEeecceeEEEEEecc
Confidence 9999999999999 699999999999999999432 222222 223479999998 889999999887777777633
Q ss_pred --CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457 246 --DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV 300 (389)
Q Consensus 246 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 300 (389)
+..++..+.. |.+..+.+.|....+ ++++++.|..++++.+
T Consensus 463 ~k~W~~~~~~~~------------~sg~st~v~Fg~~aq--~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 463 TKSWTEIKELAD------------HSGLSTGVRFGEHAQ--YLASTSMDAILRLYAL 505 (506)
T ss_pred cccceeeehhhh------------cccccceeeecccce--EEeeccchhheEEeec
Confidence 3455555554 667888999998888 9999999999888764
No 104
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=222.00 Aligned_cols=307 Identities=15% Similarity=0.192 Sum_probs=251.4
Q ss_pred CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceeeeeec-CCCCcEEEEE
Q 016457 13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECK-GHSSTVNQIS 87 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~ 87 (389)
..|-+..+|+|.++|++ +.+.+++. .+.|++++|.-||. .+|+|+..|.+.+||++..+.+..+. .|.+.|....
T Consensus 216 VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~ 295 (910)
T KOG1539|consen 216 VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGAT 295 (910)
T ss_pred EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccce
Confidence 46678889999999986 68888888 69999999999995 66777778999999999877776655 6888888888
Q ss_pred EeCCCCCCEEEEEecCCeEEEEEccCC-----------------------------------------------------
Q 016457 88 FSGPSTPHVLHSCSSDGTIRAWDTRSF----------------------------------------------------- 114 (389)
Q Consensus 88 ~~~~~~~~~l~s~~~dg~i~iwd~~~~----------------------------------------------------- 114 (389)
|.|.. ..+++++.|+.+++|=.+++
T Consensus 296 fl~~e--pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l 373 (910)
T KOG1539|consen 296 FLPGE--PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQEL 373 (910)
T ss_pred ecCCC--ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhh
Confidence 88777 68888888888887744321
Q ss_pred ------------------------------------------------eEEEEEE-----------cC------CCCeEE
Q 016457 115 ------------------------------------------------HEVWSVT-----------AG------SQEIFC 129 (389)
Q Consensus 115 ------------------------------------------------~~~~~~~-----------~~------~~~v~~ 129 (389)
....+++ .+ ...+++
T Consensus 374 ~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~a 453 (910)
T KOG1539|consen 374 GQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATA 453 (910)
T ss_pred cccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEE
Confidence 0000000 01 246788
Q ss_pred EEEeCCCCeEEEeecCCeEEEEECcCCceeeee--eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccc
Q 016457 130 FSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL--EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLL 207 (389)
Q Consensus 130 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 207 (389)
++.++.|+..+.|.+.|.|-+|++.+|-...++ ...|..+|+.++....++ .+++++.+|.+.+||..... +
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~-----l 527 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKV-----L 527 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcc-----e
Confidence 999988999999999999999999999888887 237999999999999886 99999999999999999532 3
Q ss_pred eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457 208 ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI 287 (389)
Q Consensus 208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 287 (389)
.........+..+.++ .....++++..|-.|.++|..+.+.++.|.+ |.+.|++++|||||+ ||+
T Consensus 528 ~~~l~l~~~~~~iv~h-r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g------------h~nritd~~FS~Dgr--Wli 592 (910)
T KOG1539|consen 528 KKSLRLGSSITGIVYH-RVSDLLAIALDDFSIRVVDVVTRKVVREFWG------------HGNRITDMTFSPDGR--WLI 592 (910)
T ss_pred eeeeccCCCcceeeee-ehhhhhhhhcCceeEEEEEchhhhhhHHhhc------------cccceeeeEeCCCCc--EEE
Confidence 3334456778888888 6667899999999999999999999999998 779999999999999 999
Q ss_pred EecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC-CeEEEEecc
Q 016457 288 GGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED-GRLCCWLSD 359 (389)
Q Consensus 288 ~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d-g~v~iW~~~ 359 (389)
+++.|++|++||+.++.+ +..+. -..+...+ .|||+|.+|||...| .-|++|.-.
T Consensus 593 sasmD~tIr~wDlpt~~l------ID~~~--vd~~~~sl---------s~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTL------IDGLL--VDSPCTSL---------SFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EeecCCcEEEEeccCcce------eeeEe--cCCcceee---------EECCCCCEEEEEEecCceEEEEEch
Confidence 999999999999999876 44432 34667777 999999999999988 679999754
No 105
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=198.87 Aligned_cols=305 Identities=11% Similarity=0.117 Sum_probs=225.5
Q ss_pred eEEEEecCc-------eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee--eeeec--CCCCcEEEEEEe
Q 016457 22 SIKRFGLKN-------SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY--SGECK--GHSSTVNQISFS 89 (389)
Q Consensus 22 ~i~~w~~~~-------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~--~~~~~v~~i~~~ 89 (389)
.++-|+.++ .+..+++ .+.|++++|+.||++||+++.|++|+||++.+... ...++ -.-+.-+.++|.
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC
Confidence 355566543 2345666 89999999999999999999999999999876321 11111 122346789999
Q ss_pred CCCCCCEEEEEecCCeEEEEEccCC---eEEE---------EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457 90 GPSTPHVLHSCSSDGTIRAWDTRSF---HEVW---------SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK 157 (389)
Q Consensus 90 ~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 157 (389)
||-+ ..+++.-...++++|.+... .... --+.|.-.+..+-....+.++++++.|..|.+||++ |+
T Consensus 142 pDc~-s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 142 PDCK-SVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred CCcc-eEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 9985 56666667778999987532 1111 111235566667776567788888889999999998 99
Q ss_pred eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC----CCCccceeeeccCCceeeEEEecCCCcEEEEE
Q 016457 158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI----NDDDLLESVINVGTSVGKVGFFGETNKHLWCL 233 (389)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 233 (389)
.+..+. .....-+..+.+|+|+ ++++++----|++|..--.+ ++-..+.++.+|.+.|..++|+ ++...+++.
T Consensus 220 ~L~~id-tnq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vtv 296 (420)
T KOG2096|consen 220 LLQSID-TNQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVTV 296 (420)
T ss_pred eeeeec-cccccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEEE
Confidence 999887 6667778889999997 99999888889999975221 2334566788999999999999 788899999
Q ss_pred ecCCcEEEEEcCCC-------ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcc
Q 016457 234 THIETLSIWDWKDG-------QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAA 306 (389)
Q Consensus 234 ~~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~ 306 (389)
+.||++++||+.-. +.++...... . ........+..+|.|+ .|+. +....|++|..++++.
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl---~-----aag~~p~RL~lsP~g~--~lA~-s~gs~l~~~~se~g~~- 364 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPL---H-----AAGSEPVRLELSPSGD--SLAV-SFGSDLKVFASEDGKD- 364 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcch---h-----hcCCCceEEEeCCCCc--EEEe-ecCCceEEEEcccCcc-
Confidence 99999999997521 2222221100 0 0123445899999998 4443 3556799999998776
Q ss_pred ccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457 307 TIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS 358 (389)
Q Consensus 307 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~ 358 (389)
...++..|...|.++ +|+++|++++|+| |..+++..-
T Consensus 365 -----~~~~e~~h~~~Is~i---------s~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 365 -----YPELEDIHSTTISSI---------SYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred -----chhHHHhhcCceeeE---------EecCCCcEEeeec-ceeeeeecC
Confidence 566777899999999 9999999999999 788998873
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.2e-29 Score=227.21 Aligned_cols=274 Identities=15% Similarity=0.155 Sum_probs=223.8
Q ss_pred CCccccC--CCCeEEEEecCce--------------eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCC-----
Q 016457 12 PKSQSCD--NVNSIKRFGLKNS--------------IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT----- 69 (389)
Q Consensus 12 ~~~~s~~--~~~~i~~w~~~~~--------------~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~----- 69 (389)
-..||++ .|+.+++|+.... +.+... .+.|+|+.|+|||++||+|++|+.|.||....
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~ 105 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGT 105 (942)
T ss_pred eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcc
Confidence 3577888 8889999996421 222222 78999999999999999999999999998662
Q ss_pred -------------ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC
Q 016457 70 -------------GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136 (389)
Q Consensus 70 -------------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 136 (389)
.+.+..+.+|...|.+++|+|++ .+|++++.|++|.|||..+.+.+..+++|.+.|..+.|.|-|
T Consensus 106 ~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G 183 (942)
T KOG0973|consen 106 VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG 183 (942)
T ss_pred cccccccccccceeeEEEEEecCCCccceeccCCCc--cEEEEecccceEEEEccccceeeeeeecccccccceEECCcc
Confidence 13566788999999999999999 799999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCeEEEEECcCCceeeeeeec-----ccCCeeEEEEecCCCCeEEEEeC----CCcEEEEecCCCCCCCccc
Q 016457 137 DYLLAAGCGSQIQFWDWRNKKQVACLEES-----HVEDVTQVHFVPNNQNKVVSASV----DGLICTFDTGGDINDDDLL 207 (389)
Q Consensus 137 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~ 207 (389)
+++++-+.|++|++|++.+....+.+... ....+..+.|+|+|. +|++... -..+.|.+-.+ .+.-
T Consensus 184 ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~las~nA~n~~~~~~~IieR~t----Wk~~ 258 (942)
T KOG0973|consen 184 KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLASPNAVNGGKSTIAIIERGT----WKVD 258 (942)
T ss_pred CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-eecchhhccCCcceeEEEecCC----ceee
Confidence 99999999999999998776666665521 234578899999996 8887643 23467776653 3445
Q ss_pred eeeeccCCceeeEEEecC-----C-------C----cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCc
Q 016457 208 ESVINVGTSVGKVGFFGE-----T-------N----KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDY 271 (389)
Q Consensus 208 ~~~~~~~~~i~~~~~~~~-----~-------~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (389)
..+.+|..++..+.|+|. . . ..+++|+.|++|.||.....+++...... ....
T Consensus 259 ~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l-----------f~~S 327 (942)
T KOG0973|consen 259 KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL-----------FNKS 327 (942)
T ss_pred eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh-----------hcCc
Confidence 677899999999999851 1 1 16889999999999999877777655432 3378
Q ss_pred eeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 272 FVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 272 i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
|.+++|+|||- -|+++|.||+|.++.++..++
T Consensus 328 I~DmsWspdG~--~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 328 IVDMSWSPDGF--SLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred eeeeeEcCCCC--eEEEEecCCeEEEEEcchHHh
Confidence 99999999998 678899999999999987655
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=197.88 Aligned_cols=279 Identities=17% Similarity=0.223 Sum_probs=229.9
Q ss_pred cCCCCCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeC------CC--------
Q 016457 7 ESQSQPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSP------VT-------- 69 (389)
Q Consensus 7 ~~~~~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~------~~-------- 69 (389)
...-+|...+++.|.+-++|.+. .++.++.| .+.|++++|++.+.++++++.|++..||.. ..
T Consensus 156 a~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hS 235 (481)
T KOG0300|consen 156 ADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHS 235 (481)
T ss_pred hhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCC
Confidence 34456788899999999999986 68888988 999999999999999999999999999962 10
Q ss_pred ----------------------c----eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC
Q 016457 70 ----------------------G----QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG 123 (389)
Q Consensus 70 ----------------------~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 123 (389)
+ -++..+.+|...|.+..|...+ +.++++++|.+..+||+++++.+..+.+|
T Consensus 236 sEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg--~Q~vTaSWDRTAnlwDVEtge~v~~LtGH 313 (481)
T KOG0300|consen 236 SEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG--QQMVTASWDRTANLWDVETGEVVNILTGH 313 (481)
T ss_pred chhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc--ceeeeeeccccceeeeeccCceeccccCc
Confidence 0 1345678899999999999888 79999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC-ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC
Q 016457 124 SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK-KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN 202 (389)
Q Consensus 124 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 202 (389)
....+.++-+|....+++++.|.+.++||++.. ..+..|+ +|...|+++.|.-+. .+++|+.|.+|++||+++.
T Consensus 314 d~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNM-- 388 (481)
T KOG0300|consen 314 DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNM-- 388 (481)
T ss_pred chhccccccCCcceEEEEeccCceeEeccchhhcceeeeec-ccccceeEEEEecCC--ceeecCCCceEEEeeeccc--
Confidence 999999999988888888888999999999844 3456677 999999999999885 6999999999999999943
Q ss_pred CCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCC
Q 016457 203 DDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGE 282 (389)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 282 (389)
..++. .....++++.++.+ ..+..++.--.+..|++||+... .+..+... -..+|...|.+++|..+..
T Consensus 389 -RsplA-TIRtdS~~NRvavs-~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrt-------sRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 389 -RSPLA-TIRTDSPANRVAVS-KGHPIIAIPHDNRQVRLFDLNGN-RLARLPRT-------SRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred -cCcce-eeecCCccceeEee-cCCceEEeccCCceEEEEecCCC-ccccCCcc-------cccccceeeeeeeccccCc
Confidence 23333 33467899999998 67778888888889999999744 33333310 0113778999999988765
Q ss_pred eEEEEEecCCceEEEEEeccC
Q 016457 283 NLWVIGGTGAGTVGYFPVNYG 303 (389)
Q Consensus 283 ~~~l~~g~~dg~i~i~~~~~~ 303 (389)
-.-|++++.|..+.-|.+...
T Consensus 458 ~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 458 ACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccccccceeeeeEeccc
Confidence 335789999999999998753
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=4.2e-29 Score=214.76 Aligned_cols=258 Identities=17% Similarity=0.223 Sum_probs=218.0
Q ss_pred CccccCCCCeEEEEecCc----eeeeeec-CcceEE-EeecC-CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE
Q 016457 13 KSQSCDNVNSIKRFGLKN----SIQTNFG-DDYVFE-IVPKN-DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ 85 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~----~~~~~~~-~~~v~~-~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~ 85 (389)
...+++.|+++++|+-.. ....+.+ .+-|.+ ++|-+ ++-.+++|+.|++|.+|......++..+.+|...|.+
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ 106 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCS 106 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceee
Confidence 356788999999999742 2233444 555555 67664 5557999999999999999999999999999999999
Q ss_pred EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec
Q 016457 86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165 (389)
Q Consensus 86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 165 (389)
+....++ .++||++|.++++|-. +++...+++|...|++++.-|.+ .+++++.|.+|++|.- ++.++++. +
T Consensus 107 ls~~~~~---~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-g 177 (745)
T KOG0301|consen 107 LSIGEDG---TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-G 177 (745)
T ss_pred eecCCcC---ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-c
Confidence 9987776 5999999999999976 56667799999999999998666 8999999999999984 78899998 9
Q ss_pred ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK 245 (389)
Q Consensus 166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 245 (389)
|.+-|+.+++-+++ .|++++.||.|+.|++.. ..+....+|...+.++... .++..++++++|++++||+..
T Consensus 178 HtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~-~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMA-LSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred chhheeeeEEecCC--CeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEec-CCCCeEEEecCCceEEEeecC
Confidence 99999999999985 699999999999999963 5688899999999999976 566789999999999999976
Q ss_pred CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457 246 DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG 304 (389)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~ 304 (389)
.+.+.+.-+ ...++++.+-++|+ |++|+.||.||||.....+
T Consensus 250 --e~~q~I~lP------------ttsiWsa~~L~NgD---Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 250 --ECVQVITLP------------TTSIWSAKVLLNGD---IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred --ceEEEEecC------------ccceEEEEEeeCCC---EEEeccCceEEEEEecccc
Confidence 566666531 25899999999997 6789999999999887443
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=2e-29 Score=209.30 Aligned_cols=256 Identities=14% Similarity=0.247 Sum_probs=222.0
Q ss_pred CCCeEEEEecCc-----eeeeeec---CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc--eeeeeecCCCCcEEEEEE
Q 016457 19 NVNSIKRFGLKN-----SIQTNFG---DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG--QYSGECKGHSSTVNQISF 88 (389)
Q Consensus 19 ~~~~i~~w~~~~-----~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~i~~ 88 (389)
..|.|++||+.+ ++..+.. +..|+++.+.|||+.|++|+.-.++.|||+... .....+....-...+++.
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~ 517 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 517 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc
Confidence 458899999863 4444443 788999999999999999999999999998754 333344444456788999
Q ss_pred eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457 89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (389)
+||. ++.++++.||.|.|||+.+...++.|++|.+.+.||.++++|..|.++|-|++|+.||++++..+++.. ..+
T Consensus 518 spDa--kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--F~S 593 (705)
T KOG0639|consen 518 SPDA--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSS 593 (705)
T ss_pred CCcc--ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--hhh
Confidence 9999 799999999999999999999999999999999999999999999999999999999999999888775 678
Q ss_pred CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457 169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ 248 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 248 (389)
.|.++-..|++. +++.|-.++.+-+...... ....+..|++.|.++.|. ..|+++++.+.|+.+..|...-|.
T Consensus 594 QIfSLg~cP~~d-WlavGMens~vevlh~skp-----~kyqlhlheScVLSlKFa-~cGkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 594 QIFSLGYCPTGD-WLAVGMENSNVEVLHTSKP-----EKYQLHLHESCVLSLKFA-YCGKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred hheecccCCCcc-ceeeecccCcEEEEecCCc-----cceeecccccEEEEEEec-ccCceeeecCchhhhhhccCcccc
Confidence 899999999996 9999999999998887732 244555688999999999 889999999999999999998888
Q ss_pred eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457 249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV 300 (389)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 300 (389)
.+.... ....|.+|.++.|++ ||++|+.|....||.+
T Consensus 667 siFqsk-------------E~SsVlsCDIS~ddk--yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 667 SIFQSK-------------ESSSVLSCDISFDDK--YIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeecc-------------ccCcceeeeeccCce--EEEecCCCcceEEEEE
Confidence 777666 347899999999998 9999999988888876
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=2.6e-29 Score=208.57 Aligned_cols=284 Identities=11% Similarity=0.159 Sum_probs=229.3
Q ss_pred eeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCc---eeeeeecC--CCCcEEEEEEeCCCCCCEEEEEecCCeE
Q 016457 32 IQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG---QYSGECKG--HSSTVNQISFSGPSTPHVLHSCSSDGTI 106 (389)
Q Consensus 32 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i 106 (389)
+.++.+.+-|.++..+...+.+++|+ .|.|+|||+... .++..+.. ...-|.++...|++ ..|++|+.-.++
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg--rtLivGGeastl 489 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG--RTLIVGGEASTL 489 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCC--ceEEecccccee
Confidence 44555577888899999999999998 688999998642 23333332 45679999999999 799999999999
Q ss_pred EEEEccCCeEEEEEEc--CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457 107 RAWDTRSFHEVWSVTA--GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 107 ~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 184 (389)
.|||+....+....+. ..-...+++.+|+.+..++++.||.|.|||+++...++.|+ +|.+.+.||.++++|. .|.
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGt-klW 567 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGT-KLW 567 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCc-eee
Confidence 9999987655433332 23567788999999999999999999999999999999999 9999999999999995 999
Q ss_pred EEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457 185 SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW 264 (389)
Q Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 264 (389)
+|+-|++|+.||++.+.. +. .....+.|.++.++ |.+++|++|-.++.+.+......+ .+.+..
T Consensus 568 TGGlDntvRcWDlregrq----lq-qhdF~SQIfSLg~c-P~~dWlavGMens~vevlh~skp~-kyqlhl--------- 631 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQ----LQ-QHDFSSQIFSLGYC-PTGDWLAVGMENSNVEVLHTSKPE-KYQLHL--------- 631 (705)
T ss_pred cCCCccceeehhhhhhhh----hh-hhhhhhhheecccC-CCccceeeecccCcEEEEecCCcc-ceeecc---------
Confidence 999999999999995431 11 11235689999999 788999999999999888765433 223332
Q ss_pred cCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeE
Q 016457 265 TLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG 344 (389)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l 344 (389)
|+..|.++.|.+.|+ |+++.+.|..+..|...-+.. +.+.+ ....|.+. .+|.|.+|+
T Consensus 632 ---heScVLSlKFa~cGk--wfvStGkDnlLnawrtPyGas------iFqsk--E~SsVlsC---------DIS~ddkyI 689 (705)
T KOG0639|consen 632 ---HESCVLSLKFAYCGK--WFVSTGKDNLLNAWRTPYGAS------IFQSK--ESSSVLSC---------DISFDDKYI 689 (705)
T ss_pred ---cccEEEEEEecccCc--eeeecCchhhhhhccCccccc------eeecc--ccCcceee---------eeccCceEE
Confidence 789999999999999 999999999999998876543 34433 45677777 999999999
Q ss_pred EEecCCCeEEEEec
Q 016457 345 WTGGEDGRLCCWLS 358 (389)
Q Consensus 345 ~s~~~dg~v~iW~~ 358 (389)
+||+.|..-.+|.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999998888875
No 111
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.3e-28 Score=202.19 Aligned_cols=249 Identities=16% Similarity=0.238 Sum_probs=208.8
Q ss_pred eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE----E---E-----------EcCCCCeEEEEEeC
Q 016457 73 SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW----S---V-----------TAGSQEIFCFSFGG 134 (389)
Q Consensus 73 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~---~-----------~~~~~~v~~~~~~~ 134 (389)
...+..|.-+|.+++++|++ .+.++++.+++|.-|++.+++... . + +.|...+.+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~--~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD--KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred ceeeccccCcceEEEeeccc--cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 45567799999999999999 799999999999999998876331 1 0 25677899999999
Q ss_pred CCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC
Q 016457 135 STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG 214 (389)
Q Consensus 135 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 214 (389)
++.++++++.|..|.|||.++.+.++.+. +|.+.|.+++|-... +.+++++.|+.|++|++. ....+..+.+|+
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~----~~s~vetlyGHq 286 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGT-SELYSASADRSVKVWSID----QLSYVETLYGHQ 286 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCc-cceeeeecCCceEEEehh----HhHHHHHHhCCc
Confidence 99999999999999999999999999998 999999999998766 599999999999999998 456788889999
Q ss_pred CceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce
Q 016457 215 TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT 294 (389)
Q Consensus 215 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~ 294 (389)
+.|.++... ..+..+.+|+.|+++++|++... ....|.+ +.+.+-+++|-.+. .+++|+.+|.
T Consensus 287 d~v~~IdaL-~reR~vtVGgrDrT~rlwKi~ee-sqlifrg------------~~~sidcv~~In~~---HfvsGSdnG~ 349 (479)
T KOG0299|consen 287 DGVLGIDAL-SRERCVTVGGRDRTVRLWKIPEE-SQLIFRG------------GEGSIDCVAFINDE---HFVSGSDNGS 349 (479)
T ss_pred cceeeechh-cccceEEeccccceeEEEecccc-ceeeeeC------------CCCCeeeEEEeccc---ceeeccCCce
Confidence 999999887 56677777889999999999543 3334554 55788899998765 5789999999
Q ss_pred EEEEEeccCCccccCCCeEEEecccc-----------eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 295 VGYFPVNYGGAATIGPPEAVLVGGHT-----------AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 295 i~i~~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
|.+|++...+. +......|. ..|+++ +..|...++++|+.+|.||+|.+.+.
T Consensus 350 IaLWs~~KKkp------lf~~~~AHgv~~~~~~~~~~~Witsl---------a~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 350 IALWSLLKKKP------LFTSRLAHGVIPELDPVNGNFWITSL---------AVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EEEeeecccCc------eeEeeccccccCCccccccccceeee---------EecccCceEEecCCCCceEEEEecCC
Confidence 99999988765 444443443 256666 77788888999999999999999987
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.7e-29 Score=188.65 Aligned_cols=249 Identities=17% Similarity=0.240 Sum_probs=198.6
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc---eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG---QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF 114 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 114 (389)
.+.|..+...-.|++||++++|++|+|+.+.+. +++.++.||.++|..++|.....+.+|++++.||.|.||.-.++
T Consensus 11 ~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g 90 (299)
T KOG1332|consen 11 EDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG 90 (299)
T ss_pred hhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC
Confidence 677888888889999999999999999998754 57888999999999999987433489999999999999998877
Q ss_pred e--EEEEEEcCCCCeEEEEEeCCC--CeEEEeecCCeEEEEECcCC--ceeeeeeecccCCeeEEEEecC---C------
Q 016457 115 H--EVWSVTAGSQEIFCFSFGGST--DYLLAAGCGSQIQFWDWRNK--KQVACLEESHVEDVTQVHFVPN---N------ 179 (389)
Q Consensus 115 ~--~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~---~------ 179 (389)
+ .......|...|++++|.|++ -.|+++++||.|.+.+.+.. -....+..+|.-.|++++|.|. |
T Consensus 91 ~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~ 170 (299)
T KOG1332|consen 91 RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQG 170 (299)
T ss_pred chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccC
Confidence 4 344566789999999998864 45666777999999998754 2233344489999999999987 3
Q ss_pred ----CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCC---cEEEEEecCCcEEEEEcCCCce---
Q 016457 180 ----QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETN---KHLWCLTHIETLSIWDWKDGQN--- 249 (389)
Q Consensus 180 ----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~--- 249 (389)
...|++|+.|+.|+||+...+ ....-..+.+|.+.|+.++|.|..+ ..|++++.||++.||.......
T Consensus 171 ~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 171 PAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK 248 (299)
T ss_pred cccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc
Confidence 136999999999999999864 2233344788999999999996543 4799999999999998762211
Q ss_pred eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
...+.. ....+..+.|+..|+ +|+.++.|..|.+|.-..
T Consensus 249 ~tll~~------------f~~~~w~vSWS~sGn--~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 249 KTLLEE------------FPDVVWRVSWSLSGN--ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccccc------------CCcceEEEEEecccc--EEEEecCCcEEEEEEeCC
Confidence 111111 337899999999999 889999999999997654
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=218.05 Aligned_cols=288 Identities=17% Similarity=0.248 Sum_probs=226.8
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce----eeeeecC---CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ----YSGECKG---HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~----~~~~~~~---~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 110 (389)
.....+++.+++...|+.++ ...++||.++... +...+.. -.-.+..+.|....+ ++|++++..|.|.+||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~-NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYS-NLIATCSTNGVISVWD 116 (839)
T ss_pred ccccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchh-hhheeecCCCcEEEEe
Confidence 56677888899998888888 4567888765431 1112111 112456788885443 7999999999999999
Q ss_pred ccC---CeEEEEEEcCCCCeEEEEEeCCCCeEEE-eecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457 111 TRS---FHEVWSVTAGSQEIFCFSFGGSTDYLLA-AGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA 186 (389)
Q Consensus 111 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 186 (389)
+.. .+.+..|..|...++++.|++....++. |+.||.|++||++..+...++. +....|+.++|+|...+.|+++
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccCCCceEEEe
Confidence 986 5666789999999999999987766555 5559999999999999988888 7888999999999988899999
Q ss_pred eCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc--eeEEeecccccccCCc
Q 016457 187 SVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ--NVASFENARSLASDSW 264 (389)
Q Consensus 187 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~ 264 (389)
.+.|.+.+||+|. ......++..|.++|.++.|+ |++.+|++|+.|+.|+|||+.+.+ .+.++.
T Consensus 196 ~dsG~lqlWDlRq---p~r~~~k~~AH~GpV~c~nwh-Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn---------- 261 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQ---PDRCEKKLTAHNGPVLCLNWH-PNREWLATGGRDKMVKIWDMTDSRAKPKHTIN---------- 261 (839)
T ss_pred cCCceEEEeeccC---chhHHHHhhcccCceEEEeec-CCCceeeecCCCccEEEEeccCCCccceeEEe----------
Confidence 9999999999993 456777888999999999999 589999999999999999998654 334444
Q ss_pred cCCCCCceeeecccCCCCeEEEEEec--CCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCC-CCc
Q 016457 265 TLDDVDYFVDCHYPGEGENLWVIGGT--GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQ-SHG 341 (389)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~~~~l~~g~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s-~~~ 341 (389)
...++.++.|-|.... .|++++ .|-.|+|||+...-. |...+. .|+..++.+ +|. .|-
T Consensus 262 ---Tiapv~rVkWRP~~~~-hLAtcsmv~dtsV~VWDvrRPYI-----P~~t~~-eH~~~vt~i---------~W~~~d~ 322 (839)
T KOG0269|consen 262 ---TIAPVGRVKWRPARSY-HLATCSMVVDTSVHVWDVRRPYI-----PYATFL-EHTDSVTGI---------AWDSGDR 322 (839)
T ss_pred ---ecceeeeeeeccCccc-hhhhhhccccceEEEEeeccccc-----cceeee-ccCccccce---------eccCCCc
Confidence 3378899999998763 466655 477999999997654 334554 899999999 442 344
Q ss_pred eeEEEecCCCeEEEEeccCC
Q 016457 342 IFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 342 ~~l~s~~~dg~v~iW~~~~~ 361 (389)
..|.+++.||+|..-.++..
T Consensus 323 ~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeEeecCccHHHHhhhhcc
Confidence 56889999998877666644
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1e-27 Score=186.82 Aligned_cols=249 Identities=16% Similarity=0.182 Sum_probs=198.6
Q ss_pred ccccCCCCeEEEEecCce---ee-eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457 14 SQSCDNVNSIKRFGLKNS---IQ-TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF 88 (389)
Q Consensus 14 ~~s~~~~~~i~~w~~~~~---~~-~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~ 88 (389)
.+.+|-|++||+|++... +. .... .++|.+++|+.||..+++|+.|+.+++||+.+++ ...+..|..+|.++.|
T Consensus 43 ~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~w 121 (347)
T KOG0647|consen 43 LAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHW 121 (347)
T ss_pred EEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEE
Confidence 446788999999998642 11 1222 8999999999999999999999999999999995 4556679999999999
Q ss_pred eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee-eeeeeccc
Q 016457 89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV-ACLEESHV 167 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~ 167 (389)
-+...-..|+||++|++|+.||.+...++.++... +.+.++.. ....++++..+..|.+|+++++... ..+...-+
T Consensus 122 v~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk 198 (347)
T KOG0647|consen 122 VPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLK 198 (347)
T ss_pred ecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCccc
Confidence 87663358999999999999999999999999885 78888887 4567788888999999999866432 22222344
Q ss_pred CCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC---------CceeeEEEecCCCcEEEEEecCCc
Q 016457 168 EDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG---------TSVGKVGFFGETNKHLWCLTHIET 238 (389)
Q Consensus 168 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~l~~~~~d~~ 238 (389)
-.++||+..++.. ..+.|+-+|.+.|..+..+.+ ..-..+..|. -.|++++|+| ....|++++.||+
T Consensus 199 ~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 199 WQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGT 274 (347)
T ss_pred ceeeEEEEEecCC-ceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCce
Confidence 5689999999986 679999999999999985422 2222233332 2578899994 6668999999999
Q ss_pred EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCC
Q 016457 239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGE 282 (389)
Q Consensus 239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 282 (389)
+.+||-.....++.... |..+|+++.|+.+|.
T Consensus 275 f~FWDkdar~kLk~s~~------------~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 275 FSFWDKDARTKLKTSET------------HPQPITCCSFNRNGS 306 (347)
T ss_pred EEEecchhhhhhhccCc------------CCCccceeEecCCCC
Confidence 99999887777777665 679999999999998
No 115
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.2e-28 Score=189.23 Aligned_cols=281 Identities=12% Similarity=0.137 Sum_probs=217.0
Q ss_pred eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE
Q 016457 41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120 (389)
Q Consensus 41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 120 (389)
..|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|.+++|+++| ..|+|++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg--r~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG--RKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC--CEeeeecCCceeEEEeccCCCceeEE
Confidence 6799999999999999999999999999999888999999999999999999 79999999999999999999999999
Q ss_pred EcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeee----ec-ccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457 121 TAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLE----ES-HVEDVTQVHFVPNNQNKVVSASVDGLICT 194 (389)
Q Consensus 121 ~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~----~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 194 (389)
.. .++|+.+.|+|.+...++++- +..-.+.++..+ ++++. .+ ....-.+..|.+.|+ ++++|...|.+.+
T Consensus 104 rf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkllv 179 (405)
T KOG1273|consen 104 RF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLLV 179 (405)
T ss_pred Ec-cCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCC-EEEEecCcceEEE
Confidence 87 599999999998776666554 444445554432 11111 00 111233456889895 9999999999999
Q ss_pred EecCCCCCCCccceeeeccC-CceeeEEEecCCCcEEEEEecCCcEEEEEcCCC-------c--eeEEeecccccccCCc
Q 016457 195 FDTGGDINDDDLLESVINVG-TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG-------Q--NVASFENARSLASDSW 264 (389)
Q Consensus 195 ~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~--~~~~~~~~~~~~~~~~ 264 (389)
+|..+. +++..+.... ..|..+.++ ..+.+|+..+.|..|+.|+++.- + +.+.+...-
T Consensus 180 ~~a~t~----e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV------- 247 (405)
T KOG1273|consen 180 YDAETL----ECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV------- 247 (405)
T ss_pred Eecchh----eeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH-------
Confidence 999953 4555554444 678889998 88899999999999999998631 1 112222211
Q ss_pred cCCCCCceeeecccCCCCeEEEEEecC-CceEEEEEeccCCccccCCCeEEEecccc-eeeeeccCCCcccCCCCCCCce
Q 016457 265 TLDDVDYFVDCHYPGEGENLWVIGGTG-AGTVGYFPVNYGGAATIGPPEAVLVGGHT-AVVRSVLPMPSVQGRPAQSHGI 342 (389)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~s~~~~ 342 (389)
....-.+++|+.+|. |+++|+. ...++||.-..|.+ +..+. |.. ....++ .|.|-..
T Consensus 248 ---Nk~~Wk~ccfs~dge--Yv~a~s~~aHaLYIWE~~~GsL------VKILh-G~kgE~l~DV---------~whp~rp 306 (405)
T KOG1273|consen 248 ---NKLQWKKCCFSGDGE--YVCAGSARAHALYIWEKSIGSL------VKILH-GTKGEELLDV---------NWHPVRP 306 (405)
T ss_pred ---hhhhhhheeecCCcc--EEEeccccceeEEEEecCCcce------eeeec-CCchhheeec---------cccccee
Confidence 113345788999998 8777664 46799999998876 55565 554 677888 7888888
Q ss_pred eEEEecCCCeEEEEeccCC
Q 016457 343 FGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 343 ~l~s~~~dg~v~iW~~~~~ 361 (389)
.+++- ..|.|++|.....
T Consensus 307 ~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 307 IIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeeec-cCCceEEEEeecc
Confidence 88888 5799999998754
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.3e-28 Score=200.20 Aligned_cols=272 Identities=17% Similarity=0.228 Sum_probs=213.8
Q ss_pred CeEEEEeCCCceeeeeecCC-CCcEEEEEEeCCCCCCEEEEEe-cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457 60 NVVKLYSPVTGQYSGECKGH-SSTVNQISFSGPSTPHVLHSCS-SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD 137 (389)
Q Consensus 60 ~~i~iw~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 137 (389)
..+.+||+.+|....++++. ...-.++..-.. .+++++. ....|.+|.+...........-.++|.+++-+|.+.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~---~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~ 94 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNN---EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGY 94 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhch---hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCce
Confidence 46999999999988888764 222222322222 3566654 445789999876554442222368899999998888
Q ss_pred eEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC-----CCCccceeeec
Q 016457 138 YLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI-----NDDDLLESVIN 212 (389)
Q Consensus 138 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~ 212 (389)
++++++-.|.|++|.+.+|..+..+. +|...|+|+.|+.++. +|++|+.||.|.+|++..-. ....++..+..
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 88888789999999999999999997 9999999999999996 99999999999999986321 13456777888
Q ss_pred cCCceeeEEEecC-CCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457 213 VGTSVGKVGFFGE-TNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG 291 (389)
Q Consensus 213 ~~~~i~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~ 291 (389)
|.-+|+.+...+. -...|++++.|.++++||+..+..+.++.. ...+.+++.+|-+. .+..|+.
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-------------p~si~av~lDpae~--~~yiGt~ 237 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-------------PSSIKAVALDPAER--VVYIGTE 237 (476)
T ss_pred CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-------------CCcceeEEEccccc--EEEecCC
Confidence 9999999988632 346899999999999999999998888773 37789999999888 6789999
Q ss_pred CceEEEEEeccCCc--c--------ccCCCeEEEecccce--eeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457 292 AGTVGYFPVNYGGA--A--------TIGPPEAVLVGGHTA--VVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 292 dg~i~i~~~~~~~~--~--------~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~ 359 (389)
+|.|.+.++..-.. . ..+..+..+. ||.+ .|+|+ +++-||..|++|+.||+|+|||+.
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-Gh~~~~~ITcL---------ais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-GHENESAITCL---------AISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeec-cccCCcceeEE---------EEecCccEEEeeCCCCCEEEEecc
Confidence 99999988764431 0 1122234444 8887 99999 999999999999999999999998
Q ss_pred CC
Q 016457 360 DS 361 (389)
Q Consensus 360 ~~ 361 (389)
..
T Consensus 308 S~ 309 (476)
T KOG0646|consen 308 SK 309 (476)
T ss_pred hH
Confidence 65
No 117
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=4.3e-28 Score=206.75 Aligned_cols=294 Identities=17% Similarity=0.193 Sum_probs=209.1
Q ss_pred EEEeecCC---CCeEEEEecCCeEEEEeCCCcee------eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc
Q 016457 42 FEIVPKND---WSLMAVSLSTNVVKLYSPVTGQY------SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR 112 (389)
Q Consensus 42 ~~~~~~~~---~~~l~~~~~d~~i~iw~~~~~~~------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~ 112 (389)
++..|++. ..+||.+..+|.|.++|....+. +..+..|...|.++.|.|.. ..|++++.|.++++||+.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge--~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGE--SLLVSASGDSTIRPWDVK 130 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCc--eeEEEccCCceeeeeeec
Confidence 44666652 35899999999999999765322 34566799999999999944 799999999999999999
Q ss_pred CCeEEEE--EEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCce--------------------eeeee------
Q 016457 113 SFHEVWS--VTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQ--------------------VACLE------ 163 (389)
Q Consensus 113 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~--------------------~~~~~------ 163 (389)
..+++.. +.+|...|.+++|.|.+..+++.|. ||.|.|||++-... ...+.
T Consensus 131 ~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 131 TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 9988877 8899999999999998887766555 99999999974320 00000
Q ss_pred ecccCCeeE---EEEecCCCCeEEEEeC-CCcEEEEecCCCCCC----Cccceeeecc---CCceeeEEEecCCCcEEEE
Q 016457 164 ESHVEDVTQ---VHFVPNNQNKVVSASV-DGLICTFDTGGDIND----DDLLESVINV---GTSVGKVGFFGETNKHLWC 232 (389)
Q Consensus 164 ~~~~~~v~~---~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~----~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~ 232 (389)
.++...|.+ +.+..|. +.|++++. |+.|++||++..... ......+..+ ...+.++... ..|.+|++
T Consensus 211 kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD-ssGt~L~A 288 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD-SSGTYLFA 288 (720)
T ss_pred ccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec-CCCCeEEE
Confidence 123334444 4444555 48888887 999999999954311 1111122222 2345566665 55788888
Q ss_pred EecCCcEEEEEcCCCc--eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCC
Q 016457 233 LTHIETLSIWDWKDGQ--NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGP 310 (389)
Q Consensus 233 ~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~ 310 (389)
.+.|+.|++|++.... ++..+.+.. ....-..-..+|++. ++++|+.|...++|.+.+.+.
T Consensus 289 sCtD~sIy~ynm~s~s~sP~~~~sg~~----------~~sf~vks~lSpd~~--~l~SgSsd~~ayiw~vs~~e~----- 351 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSLSISPVAEFSGKL----------NSSFYVKSELSPDDC--SLLSGSSDEQAYIWVVSSPEA----- 351 (720)
T ss_pred EecCCcEEEEeccccCcCchhhccCcc----------cceeeeeeecCCCCc--eEeccCCCcceeeeeecCccC-----
Confidence 8889999999997642 333444322 112233456789998 999999999999999998765
Q ss_pred CeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcccc
Q 016457 311 PEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEIN 365 (389)
Q Consensus 311 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~~~ 365 (389)
+...+ .||...|+++.+ +-++.+. ++++++|-.+++|++...+++.
T Consensus 352 ~~~~l-~Ght~eVt~V~w-------~pS~~t~-v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 352 PPALL-LGHTREVTTVRW-------LPSATTP-VATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred Chhhh-hCcceEEEEEee-------ccccCCC-ceeeccCcceEEEeccCchhhc
Confidence 23334 499999999921 1123333 4778999999999998776555
No 118
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.7e-27 Score=201.78 Aligned_cols=289 Identities=14% Similarity=0.161 Sum_probs=230.0
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce-eeeeecC-CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ-YSGECKG-HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH 115 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 115 (389)
+.+|.+|||+.+.+.||++-.+|.|.||++..+= ....+.+ ....|.+++|++.+ .|.+.+.+|.|.-||+.+++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC---eEEeecCCceEEEEecccCc
Confidence 7899999999999999999999999999998752 2334444 45679999999655 89999999999999999999
Q ss_pred EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-ecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457 116 EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESHVEDVTQVHFVPNNQNKVVSASVDGLICT 194 (389)
Q Consensus 116 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 194 (389)
+...+....+.|++++.+|.+..++.++.||.+..++...++...... ...++.+.++.|+|++. .+++|+.||.|++
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGVIRI 180 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecccCceEEE
Confidence 999999889999999999999999999999988888877766543322 13568899999999994 8999999999999
Q ss_pred EecCCCCCCCccceeeec----cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCC
Q 016457 195 FDTGGDINDDDLLESVIN----VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVD 270 (389)
Q Consensus 195 ~d~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (389)
||..++.........+.. ...-|+++.|. .+ ..+++|...|+|.+||...+..++.+.. |..
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~------------h~a 246 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RD-STIASGDSAGTVTFWDSIFGTLIQSHSC------------HDA 246 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEe-ec-CcEEEecCCceEEEEcccCcchhhhhhh------------hhc
Confidence 999966422211111111 23357888887 33 3799999999999999999999988887 669
Q ss_pred ceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC
Q 016457 271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED 350 (389)
Q Consensus 271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d 350 (389)
.|.+++..++++ .+++++.|+.|.-|...+.+.... .......|...|+++ +..++ .|++||.|
T Consensus 247 dVl~Lav~~~~d--~vfsaGvd~~ii~~~~~~~~~~wv---~~~~r~~h~hdvrs~---------av~~~--~l~sgG~d 310 (691)
T KOG2048|consen 247 DVLALAVADNED--RVFSAGVDPKIIQYSLTTNKSEWV---INSRRDLHAHDVRSM---------AVIEN--ALISGGRD 310 (691)
T ss_pred ceeEEEEcCCCC--eEEEccCCCceEEEEecCCcccee---eeccccCCcccceee---------eeecc--eEEeccee
Confidence 999999999988 778999999999998877643100 112224688888888 44444 67999999
Q ss_pred CeEEEEeccC
Q 016457 351 GRLCCWLSDD 360 (389)
Q Consensus 351 g~v~iW~~~~ 360 (389)
..+.+=....
T Consensus 311 ~~l~i~~s~~ 320 (691)
T KOG2048|consen 311 FTLAICSSRE 320 (691)
T ss_pred eEEEEccccc
Confidence 9998876654
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=1.8e-26 Score=197.77 Aligned_cols=276 Identities=14% Similarity=0.093 Sum_probs=202.7
Q ss_pred CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE-EEEecCCeEEEEEccCCeEEEEEEcCCCCeEE
Q 016457 51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL-HSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFC 129 (389)
Q Consensus 51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 129 (389)
+.+++++.|+.|++||+.+++.+..+..+. .+.+++|+|++ ..+ ++++.++.|++||..+++.+..+..+ ..+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDG--KLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCC--CEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccE
Confidence 578889999999999999999888887654 46789999998 555 67778999999999999888777665 34578
Q ss_pred EEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC-cEEEEecCCCCCCCccc
Q 016457 130 FSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG-LICTFDTGGDINDDDLL 207 (389)
Q Consensus 130 ~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~ 207 (389)
++|+|+++.+++++. ++.|++||+++.+.+..+. +...+.+++|+|++. ++++++.++ .+.+||..+.. ..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~----~~ 150 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYE----IV 150 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCe----EE
Confidence 899999988877654 8999999999888777775 344578899999996 888877765 46778987432 22
Q ss_pred eeeeccCCceeeEEEecCCCcEEEE-EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEE
Q 016457 208 ESVINVGTSVGKVGFFGETNKHLWC-LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWV 286 (389)
Q Consensus 208 ~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 286 (389)
... .....+..++|+ ++++.|++ +..++.|++||+.+++.+..+........ ........++|+|+++.++
T Consensus 151 ~~~-~~~~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~s~dg~~~~- 222 (300)
T TIGR03866 151 DNV-LVDQRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-----PEAVQPVGIKLTKDGKTAF- 222 (300)
T ss_pred EEE-EcCCCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-----cccCCccceEECCCCCEEE-
Confidence 222 233455778998 66776654 45689999999999887776542110000 0012234688999998433
Q ss_pred EEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe-cCCCeEEEEeccCCc
Q 016457 287 IGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG-GEDGRLCCWLSDDSS 362 (389)
Q Consensus 287 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~v~iW~~~~~~ 362 (389)
++.+.++.|.+||+.+++. +..+. +...+.++ +|+|+|++|+++ +.+|.|++||+....
T Consensus 223 ~~~~~~~~i~v~d~~~~~~------~~~~~--~~~~~~~~---------~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 223 VALGPANRVAVVDAKTYEV------LDYLL--VGQRVWQL---------AFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EEcCCCCeEEEEECCCCcE------EEEEE--eCCCcceE---------EECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 3344566899999987665 33333 34467777 999999999886 569999999998753
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.4e-27 Score=185.69 Aligned_cols=292 Identities=15% Similarity=0.214 Sum_probs=220.9
Q ss_pred CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCcee------e----e-----eecCCCCcEEEEEEeCCCCCCEEEEEe
Q 016457 38 DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQY------S----G-----ECKGHSSTVNQISFSGPSTPHVLHSCS 101 (389)
Q Consensus 38 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~------~----~-----~~~~~~~~v~~i~~~~~~~~~~l~s~~ 101 (389)
.+.|+++...+ .|+++++|+.||.|.+||+++... + . .-.+|.-.|..+.|.|-.. -.+.+++
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt-GmFtssS 121 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT-GMFTSSS 121 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC-ceeeccc
Confidence 78899999987 579999999999999999975421 0 0 1145788899999999765 5899999
Q ss_pred cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC--CeEEEee-cCCeEEEEECcCCceeeeeeecccCCeeEEEEecC
Q 016457 102 SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST--DYLLAAG-CGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN 178 (389)
Q Consensus 102 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 178 (389)
.|.++++||..+.+....|+. ++.|.+-+++|-. ..|++++ .+-.|++-|+.+|..-.++. +|...|.++.|+|.
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSPS 199 (397)
T ss_pred ccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEeccC
Confidence 999999999999999888887 4788888888743 3455544 48899999999999999999 99999999999999
Q ss_pred CCCeEEEEeCCCcEEEEecCCCC-----------CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457 179 NQNKVVSASVDGLICTFDTGGDI-----------NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG 247 (389)
Q Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 247 (389)
.+..|++|+.||.|++||++... .....+..-..|.+.+..++|. .++.++++.+.|..+++|+..+|
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t-Sd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT-SDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec-ccchhhhhccCccceEEeecccC
Confidence 98889999999999999998431 0111222345678899999999 88999999999999999999887
Q ss_pred cee-EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457 248 QNV-ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV 326 (389)
Q Consensus 248 ~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 326 (389)
+.. ..+...-..... | -.+. +. +.+... ++ ---.++.+.++.+-++.. +..+. +|-..|.+.
T Consensus 279 ~ntl~~~g~~~~n~~~-----~-~~~~-~~-~~~s~v-fv-~~p~~~~lall~~~sgs~------ir~l~-~h~k~i~c~ 341 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTT-----S-FAVH-IQ-SMDSDV-FV-LFPNDGSLALLNLLEGSF------VRRLS-THLKRINCA 341 (397)
T ss_pred cccccccccccccccc-----c-ceEE-Ee-ecccce-EE-EEecCCeEEEEEccCceE------EEeee-cccceeeEE
Confidence 543 222211100000 0 1111 22 222231 22 222447888888888776 55554 887788888
Q ss_pred cCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457 327 LPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 327 ~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~ 359 (389)
+|.|+=+.+.+|..|+.|..|-..
T Consensus 342 ---------~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 342 ---------AYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ---------eecCchhhhhccccCCcccccccc
Confidence 788888888999999999999883
No 121
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.1e-28 Score=190.56 Aligned_cols=267 Identities=16% Similarity=0.187 Sum_probs=214.9
Q ss_pred CccccCCCCeEEEEecC--------------------ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce
Q 016457 13 KSQSCDNVNSIKRFGLK--------------------NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ 71 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~--------------------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 71 (389)
..|+++.|.+|++.|+. ..++++.. -+.|+++.|+|....|++|+.|++|++||+..-.
T Consensus 126 lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~s 205 (430)
T KOG0640|consen 126 LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTS 205 (430)
T ss_pred EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHH
Confidence 46788899999999974 14566666 8899999999999999999999999999987543
Q ss_pred ee---eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE---EcCCCCeEEEEEeCCCCeEEEeecC
Q 016457 72 YS---GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV---TAGSQEIFCFSFGGSTDYLLAAGCG 145 (389)
Q Consensus 72 ~~---~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d 145 (389)
.. +.++ ...+|.+|.|+|.| ++|+.|....++++||+++.++...- ..|.+.|+++.+++.++..++++.|
T Consensus 206 aKrA~K~~q-d~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD 282 (430)
T KOG0640|consen 206 AKRAFKVFQ-DTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD 282 (430)
T ss_pred HHHHHHHhh-ccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccC
Confidence 22 2333 56789999999999 79999999999999999998876544 3468999999999999999999999
Q ss_pred CeEEEEECcCCceeeeeeecccC-CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC-----Cceee
Q 016457 146 SQIQFWDWRNKKQVACLEESHVE-DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG-----TSVGK 219 (389)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----~~i~~ 219 (389)
|.|++||--+++++.++..+|.+ .|.+..|..+++ ++++.+.|..+++|.+.++ ..+..+.+.+ .--+.
T Consensus 283 G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~----R~l~~YtGAg~tgrq~~rtq 357 (430)
T KOG0640|consen 283 GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK-YILSSGKDSTVKLWEISTG----RMLKEYTGAGTTGRQKHRTQ 357 (430)
T ss_pred CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe-EEeecCCcceeeeeeecCC----ceEEEEecCCcccchhhhhh
Confidence 99999999999999999877765 689999999997 9999999999999999976 3444444331 11233
Q ss_pred EEEecCCCcEEEEEec-CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457 220 VGFFGETNKHLWCLTH-IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF 298 (389)
Q Consensus 220 ~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~ 298 (389)
..|+ ...++++.-.. .+.+.-||.++...+..+. .+|.+.+..+.-+|.+. .+++++.|..+++|
T Consensus 358 AvFN-htEdyVl~pDEas~slcsWdaRtadr~~l~s-----------lgHn~a~R~i~HSP~~p--~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 358 AVFN-HTEDYVLFPDEASNSLCSWDARTADRVALLS-----------LGHNGAVRWIVHSPVEP--AFMTCSDDFRARFW 423 (430)
T ss_pred hhhc-CccceEEccccccCceeeccccchhhhhhcc-----------cCCCCCceEEEeCCCCC--ceeeecccceeeee
Confidence 4455 45556555443 4689999999886665443 24889999999999998 67999999999999
Q ss_pred Eec
Q 016457 299 PVN 301 (389)
Q Consensus 299 ~~~ 301 (389)
--.
T Consensus 424 yrr 426 (430)
T KOG0640|consen 424 YRR 426 (430)
T ss_pred eec
Confidence 543
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-28 Score=200.92 Aligned_cols=242 Identities=12% Similarity=0.156 Sum_probs=206.8
Q ss_pred CeEEEEecCceeeee-ec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE
Q 016457 21 NSIKRFGLKNSIQTN-FG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL 97 (389)
Q Consensus 21 ~~i~~w~~~~~~~~~-~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l 97 (389)
..|.+|.+.++.+.. .. ++.|.|++-+|+|.+|+.|+..|.|++|.+.+|+++..+.+|-..|+|+.|+.|+ .+|
T Consensus 61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg--s~i 138 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG--SHI 138 (476)
T ss_pred ccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC--cEE
Confidence 367888886543333 22 8999999999999999999899999999999999999999999999999999999 799
Q ss_pred EEEecCCeEEEEEcc---------CCeEEEEEEcCCCCeEEEEEeC--CCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457 98 HSCSSDGTIRAWDTR---------SFHEVWSVTAGSQEIFCFSFGG--STDYLLAAGCGSQIQFWDWRNKKQVACLEESH 166 (389)
Q Consensus 98 ~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (389)
+||+.||.|.+|.+. +-++++.|..|.-+|+++...+ .+.++++++.|.++++||+..+..+.++. .
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--f 216 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--F 216 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--c
Confidence 999999999999875 3467889999999999998764 35789999999999999999999999886 7
Q ss_pred cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC------------CCCccceeeeccCC--ceeeEEEecCCCcEEEE
Q 016457 167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI------------NDDDLLESVINVGT--SVGKVGFFGETNKHLWC 232 (389)
Q Consensus 167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~ 232 (389)
...+.+++.+|.+. .+++|+.+|.|.+.++.... .....+..+.+|.. .|++++++ -++.+|++
T Consensus 217 p~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-~DgtlLlS 294 (476)
T KOG0646|consen 217 PSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-TDGTLLLS 294 (476)
T ss_pred CCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe-cCccEEEe
Confidence 88999999999996 99999999999999886432 12234455667776 99999999 89999999
Q ss_pred EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCC
Q 016457 233 LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGE 280 (389)
Q Consensus 233 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 280 (389)
|+.||.++|||+.+.++++++...+ ++|+.+.+.|-
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~~~k------------gpVtnL~i~~~ 330 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQTSK------------GPVTNLQINPL 330 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHhhhc------------cccceeEeecc
Confidence 9999999999999999998877533 67777777554
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2e-27 Score=185.85 Aligned_cols=253 Identities=15% Similarity=0.172 Sum_probs=199.9
Q ss_pred ccCCCCeEEEEecCc--eeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCC
Q 016457 16 SCDNVNSIKRFGLKN--SIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPST 93 (389)
Q Consensus 16 s~~~~~~i~~w~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 93 (389)
-.+.||++++|+... ....+....++++++|.++. .+++|+.||.|+.+|+.+++.. .+..|..+|.||.+++..
T Consensus 30 vssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~- 106 (323)
T KOG1036|consen 30 VSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEV- 106 (323)
T ss_pred EEeccCcEEEEeccchhhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccC-
Confidence 356899999999864 33334448999999999854 7889999999999999987654 445599999999999876
Q ss_pred CCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-ecccCCeeE
Q 016457 94 PHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESHVEDVTQ 172 (389)
Q Consensus 94 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~ 172 (389)
..+++|++|++|++||.+.......+... ..|.++.. .++.|++++.+..+.+||+++.....+.. ...+-.++|
T Consensus 107 -~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~ 182 (323)
T KOG1036|consen 107 -GCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRC 182 (323)
T ss_pred -CeEEEcccCccEEEEeccccccccccccC-ceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEE
Confidence 69999999999999999987777676654 58999988 48899999999999999999876544332 134567999
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC---------CceeeEEEecCCCcEEEEEecCCcEEEEE
Q 016457 173 VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG---------TSVGKVGFFGETNKHLWCLTHIETLSIWD 243 (389)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~l~~~~~d~~i~i~d 243 (389)
+++.|++. =+++++-||.|.+=.+............+..|. -+|++++|+ |-...|++|+.||.|.+||
T Consensus 183 v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh-p~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 183 VALVPNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH-PIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEecCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec-cccceEEecCCCceEEEcc
Confidence 99999875 788999999998866663321222223333332 379999999 4567899999999999999
Q ss_pred cCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457 244 WKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG 291 (389)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~ 291 (389)
+.+.+.+..+.. .+..|.+++|+.+|. .||.++.
T Consensus 261 ~~~rKrl~q~~~------------~~~SI~slsfs~dG~--~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAK------------YETSISSLSFSMDGS--LLAIASS 294 (323)
T ss_pred CcchhhhhhccC------------CCCceEEEEeccCCC--eEEEEec
Confidence 999998888875 347799999999999 6676643
No 124
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=8.2e-28 Score=197.37 Aligned_cols=296 Identities=17% Similarity=0.130 Sum_probs=222.4
Q ss_pred CcceEEEeecCCC--CeEEEEecCCeEEEEeCCCc----eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457 38 DDYVFEIVPKNDW--SLMAVSLSTNVVKLYSPVTG----QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111 (389)
Q Consensus 38 ~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~ 111 (389)
...|++++|+|.. +++|+|...|+|-+||+.+. .-+..+..|..+|.+|.|+|.+. ..+++.+.||+|+.-|+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTIRLQDF 264 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCceeeeeee
Confidence 7899999999965 58889999999999999532 23455678999999999999875 68999999999999999
Q ss_pred cCCeE--EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce-eeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457 112 RSFHE--VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ-VACLEESHVEDVTQVHFVPNNQNKVVSASV 188 (389)
Q Consensus 112 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 188 (389)
+.... +..+......+.++.|+..+..++.+..=|...+||++++.. ...+. .|...|++|+++|..+.+|++++.
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCCCchheeeccc
Confidence 86543 333333456677888987888888888878999999998765 44555 688899999999999989999999
Q ss_pred CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC----CCceeEEeecccccccCCc
Q 016457 189 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK----DGQNVASFENARSLASDSW 264 (389)
Q Consensus 189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~~~~~~ 264 (389)
|++.+|||+|.-.....++.....|...|.+..|+|.++. |++.+.|..|+|||.. ...+...+..... ...
T Consensus 344 D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~--t~R- 419 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR--TGR- 419 (498)
T ss_pred CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCc--ccc-
Confidence 9999999999543333346677789999999999966666 9999999999999984 2233333332110 000
Q ss_pred cCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCcee-
Q 016457 265 TLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIF- 343 (389)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~- 343 (389)
| -......|.|+.. +++.|..-..|-|||-..++. +..+...-...|.++- .|+|-+..
T Consensus 420 ---w-lT~fKA~W~P~~~--li~vg~~~r~IDv~~~~~~q~------v~el~~P~~~tI~~vn--------~~HP~~~~~ 479 (498)
T KOG4328|consen 420 ---W-LTPFKAAWDPDYN--LIVVGRYPRPIDVFDGNGGQM------VCELHDPESSTIPSVN--------EFHPMRDTL 479 (498)
T ss_pred ---c-ccchhheeCCCcc--EEEEeccCcceeEEcCCCCEE------eeeccCccccccccce--------eecccccce
Confidence 1 2345678999877 899999989999999988774 3443312223444442 67777774
Q ss_pred EEEecCCCeEEEEecc
Q 016457 344 GWTGGEDGRLCCWLSD 359 (389)
Q Consensus 344 l~s~~~dg~v~iW~~~ 359 (389)
++.++.-|.|.||--+
T Consensus 480 ~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 480 AAGGNSSGKIYVFTNK 495 (498)
T ss_pred eccCCccceEEEEecC
Confidence 4445577888888644
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=195.89 Aligned_cols=283 Identities=9% Similarity=0.117 Sum_probs=224.9
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCC--ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT--GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH 115 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 115 (389)
.++|+++.|+|...+|++|+.|++++||.++. ...++.+.-...+|.+.+|.|+|. ..+++++....+..||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccccc
Confidence 78899999999999999999999999998863 345566655678999999999994 489999999999999998876
Q ss_pred EEE--EEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcE
Q 016457 116 EVW--SVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI 192 (389)
Q Consensus 116 ~~~--~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 192 (389)
... ...++ ...+.....+|+++.++..|..|.|.+....+++.+.+++ -.+.|..++|+.+++ .|++++.+|.|
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk-~l~~~~~~GeV 368 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSK-ELLASGGTGEV 368 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCc-EEEEEcCCceE
Confidence 543 23333 3467788899999999999999999999999999999997 678899999999996 88888889999
Q ss_pred EEEecCCCCCCCccceeeeccCCce--eeEEEecCCCcEEEEEecCCcEEEEEcCC------CceeEEeecccccccCCc
Q 016457 193 CTFDTGGDINDDDLLESVINVGTSV--GKVGFFGETNKHLWCLTHIETLSIWDWKD------GQNVASFENARSLASDSW 264 (389)
Q Consensus 193 ~i~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~~~~~~ 264 (389)
.+||++.. .++..+.. ++.| ++++.+ .++.+|++|+..|.|.|||..+ .+++..+..
T Consensus 369 ~v~nl~~~----~~~~rf~D-~G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN--------- 433 (514)
T KOG2055|consen 369 YVWNLRQN----SCLHRFVD-DGSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN--------- 433 (514)
T ss_pred EEEecCCc----ceEEEEee-cCccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCCchhhhhh---------
Confidence 99999943 44444433 3333 456666 7788999999999999999653 345555554
Q ss_pred cCCCCCceeeecccCCCCeEEEEEe--cCCceEEEEEeccCCccccCCCeEEEe--cccceeeeeccCCCcccCCCCCCC
Q 016457 265 TLDDVDYFVDCHYPGEGENLWVIGG--TGAGTVGYFPVNYGGAATIGPPEAVLV--GGHTAVVRSVLPMPSVQGRPAQSH 340 (389)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~~~~l~~g--~~dg~i~i~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~s~~ 340 (389)
-...|.++.|+++.+ +|+.+ .....+++-.+.+... ...++ ...-+.|+|+ +|||.
T Consensus 434 ---Ltt~Itsl~Fn~d~q--iLAiaS~~~knalrLVHvPS~TV------FsNfP~~n~~vg~vtc~---------aFSP~ 493 (514)
T KOG2055|consen 434 ---LTTAITSLQFNHDAQ--ILAIASRVKKNALRLVHVPSCTV------FSNFPTSNTKVGHVTCM---------AFSPN 493 (514)
T ss_pred ---hheeeeeeeeCcchh--hhhhhhhccccceEEEeccceee------eccCCCCCCcccceEEE---------EecCC
Confidence 337899999999999 55544 4567899888877543 11111 1222567888 99999
Q ss_pred ceeEEEecCCCeEEEEecc
Q 016457 341 GIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 341 ~~~l~s~~~dg~v~iW~~~ 359 (389)
+.|||.|-++|.|.+|++.
T Consensus 494 sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 494 SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CceEEeecCCCceeeEeec
Confidence 9999999999999999985
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.1e-28 Score=183.60 Aligned_cols=230 Identities=17% Similarity=0.261 Sum_probs=190.0
Q ss_pred CccccCCCCeEEEEecC-----ceeeeeec-CcceEEEeecC--CCCeEEEEecCCeEEEEeCCCce--eeeeecCCCCc
Q 016457 13 KSQSCDNVNSIKRFGLK-----NSIQTNFG-DDYVFEIVPKN--DWSLMAVSLSTNVVKLYSPVTGQ--YSGECKGHSST 82 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~-----~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~ 82 (389)
+.|||++|++|+++... +++.++.| .++|..++|.. .|.+||+++.||.|.||.-++|+ ....+..|...
T Consensus 25 rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~S 104 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSAS 104 (299)
T ss_pred eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhccc
Confidence 68999999999999985 35677888 99999999986 88999999999999999988774 34456789999
Q ss_pred EEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---eEEEEEEcCCCCeEEEEEeCC---C-----------CeEEEeecC
Q 016457 83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---HEVWSVTAGSQEIFCFSFGGS---T-----------DYLLAAGCG 145 (389)
Q Consensus 83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~d 145 (389)
|++++|.|.+.+-.|++++.||.|.|.+.+.. ........|.-.|++++|.|. + .+|+++|.|
T Consensus 105 VNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD 184 (299)
T KOG1332|consen 105 VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD 184 (299)
T ss_pred ceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCc
Confidence 99999999987789999999999999998754 223445678899999999986 3 459999999
Q ss_pred CeEEEEECcCCc--eeeeeeecccCCeeEEEEecCC---CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeE
Q 016457 146 SQIQFWDWRNKK--QVACLEESHVEDVTQVHFVPNN---QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKV 220 (389)
Q Consensus 146 ~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 220 (389)
..|+||+..+++ .-.++. +|.+.|+.++|.|.- ...|++++.||+|.||..+... .......+......+..+
T Consensus 185 n~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-e~wk~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 185 NLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-EPWKKTLLEEFPDVVWRV 262 (299)
T ss_pred cceeeeecCCcchhhhhhhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc-CcccccccccCCcceEEE
Confidence 999999988764 234466 899999999999974 3489999999999999988322 222222333456789999
Q ss_pred EEecCCCcEEEEEecCCcEEEEEcC
Q 016457 221 GFFGETNKHLWCLTHIETLSIWDWK 245 (389)
Q Consensus 221 ~~~~~~~~~l~~~~~d~~i~i~d~~ 245 (389)
.|+ ..+++|++++.|+.+.+|.-.
T Consensus 263 SWS-~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 263 SWS-LSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEe-ccccEEEEecCCcEEEEEEeC
Confidence 999 789999999999999999754
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=4.3e-26 Score=189.58 Aligned_cols=299 Identities=13% Similarity=0.162 Sum_probs=230.7
Q ss_pred CCCCeEEEEecCc--eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee---ecC-CCCcEEEEEEeC
Q 016457 18 DNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE---CKG-HSSTVNQISFSG 90 (389)
Q Consensus 18 ~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~---~~~-~~~~v~~i~~~~ 90 (389)
+.+..+.+||..+ ....... ++.|....|+|.+.-|++....+-+..|+.+.+.+.+. +.. ...-|.|++|.+
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE 256 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence 3455677777653 2333333 78899999999775554444478999999988755443 333 236799999999
Q ss_pred CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-----------ee
Q 016457 91 PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-----------QV 159 (389)
Q Consensus 91 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------~~ 159 (389)
++ -+++|..+|.|.||+..+.+..+....|.+.|.+++.. .++.|++++.|..|..||-.-.+ .+
T Consensus 257 ng---dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l-r~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 257 NG---DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCML-RDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPI 332 (626)
T ss_pred CC---CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEe-cCccEeecCccceEEeccccccccccccCchhcCCe
Confidence 98 69999999999999999888888888999999999998 66778888889999999832100 00
Q ss_pred ee----------------------------eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee
Q 016457 160 AC----------------------------LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI 211 (389)
Q Consensus 160 ~~----------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 211 (389)
++ ...+|......++.+|... ++++++.|+.+++|+ . ..+.-..
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~-~------~k~~wt~ 404 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN-D------HKLEWTK 404 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc-C------CceeEEE
Confidence 11 0125777888899999985 999999999999999 3 2244444
Q ss_pred ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457 212 NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG 291 (389)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~ 291 (389)
....+..++.|+ |.+ .+++|+..|...+.|.++...+..-.. ..++..++|+|+|. +||.|+.
T Consensus 405 ~~~d~~~~~~fh-psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-------------~~~ls~v~ysp~G~--~lAvgs~ 467 (626)
T KOG2106|consen 405 IIEDPAECADFH-PSG-VVAVGTATGRWFVLDTETQDLVTIHTD-------------NEQLSVVRYSPDGA--FLAVGSH 467 (626)
T ss_pred EecCceeEeecc-Ccc-eEEEeeccceEEEEecccceeEEEEec-------------CCceEEEEEcCCCC--EEEEecC
Confidence 567789999999 566 999999999999999998655544332 37899999999999 9999999
Q ss_pred CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457 292 AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 292 dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~ 359 (389)
|+.|+||.+..... ........|..+|+.+ .||+|++||.+-+-|-.|..|...
T Consensus 468 d~~iyiy~Vs~~g~-----~y~r~~k~~gs~ithL---------DwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 468 DNHIYIYRVSANGR-----KYSRVGKCSGSPITHL---------DWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred CCeEEEEEECCCCc-----EEEEeeeecCceeEEe---------eecCCCceEEeccCceEEEEEccc
Confidence 99999999986643 1222222344888888 999999999999999999999443
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=1.3e-26 Score=192.67 Aligned_cols=315 Identities=14% Similarity=0.198 Sum_probs=240.4
Q ss_pred CCccccCCCCeEEEEecCce--eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee---------------
Q 016457 12 PKSQSCDNVNSIKRFGLKNS--IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS--------------- 73 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~~~--~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~--------------- 73 (389)
.+.-++.++|.|.+|+.+.. .++... ++.|.+++.-.+|.+|- |+.|..|..||-. -+.+
T Consensus 258 gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 258 GDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTV 335 (626)
T ss_pred CCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc-ccccccccCchhcCCeeEE
Confidence 35668889999999998642 222223 89999999999996555 9999999999831 1100
Q ss_pred --------------------------eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe
Q 016457 74 --------------------------GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI 127 (389)
Q Consensus 74 --------------------------~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 127 (389)
....+|.+....++.+|+. +++++++.|+.+++|+ ..+++.+... ..++
T Consensus 336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~--~q~~T~gqdk~v~lW~--~~k~~wt~~~-~d~~ 410 (626)
T KOG2106|consen 336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK--NQLLTCGQDKHVRLWN--DHKLEWTKII-EDPA 410 (626)
T ss_pred ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh--hheeeccCcceEEEcc--CCceeEEEEe-cCce
Confidence 0124688889999999998 7999999999999999 5666666655 5889
Q ss_pred EEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccc
Q 016457 128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLL 207 (389)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 207 (389)
.|+.|+|.+ .++++...|...+.|.++...+..-. . ..++++++|+|+|. +||.|+.|+.|++|-+..........
T Consensus 411 ~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred eEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-c-CCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEe
Confidence 999999988 88888889999999999866655554 3 88999999999995 99999999999999998543222222
Q ss_pred eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC---------ccCCCCCceeeeccc
Q 016457 208 ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS---------WTLDDVDYFVDCHYP 278 (389)
Q Consensus 208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~ 278 (389)
.. .+..+|+.+.|+ .+++++.+-+.|-.|-.|....-+.+...... ...+ ..-.+...+..++-+
T Consensus 487 ~k--~~gs~ithLDwS-~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDv---kW~t~~c~lGF~v~g~s~~t~i~a~~rs 560 (626)
T KOG2106|consen 487 GK--CSGSPITHLDWS-SDSQFLVSNSGDYEILYWKPSECKQITSVKDV---KWATYTCTLGFEVFGGSDGTDINAVARS 560 (626)
T ss_pred ee--ecCceeEEeeec-CCCceEEeccCceEEEEEccccCcccceecce---eeeeeEEEEEEEEecccCCchHHHhhhh
Confidence 22 244899999999 88999999999999999954433322221110 0000 001155677778888
Q ss_pred CCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457 279 GEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS 358 (389)
Q Consensus 279 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~ 358 (389)
.+.+ ++++|...|.|++|...-.+. ..+-.++ .+|+..|.++ +|.-+...|++.+.|..|..|++
T Consensus 561 ~~~~--~lA~gdd~g~v~lf~yPc~s~---rA~~he~-~ghs~~vt~V---------~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 561 HCEK--LLASGDDFGKVHLFSYPCSSP---RAPSHEY-GGHSSHVTNV---------AFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhh--hhhccccCceEEEEccccCCC---cccceee-ccccceeEEE---------EEeeCCceEEecCCCceEEEEEe
Confidence 8888 899999999999998876554 2333455 4999999999 89888888888889999999986
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-27 Score=195.06 Aligned_cols=251 Identities=13% Similarity=0.153 Sum_probs=198.0
Q ss_pred CcceEEEeecCC-------CCeEEEEecCCeEEEEeCCCce---ee------------------eeecCCCCcEEEEEEe
Q 016457 38 DDYVFEIVPKND-------WSLMAVSLSTNVVKLYSPVTGQ---YS------------------GECKGHSSTVNQISFS 89 (389)
Q Consensus 38 ~~~v~~~~~~~~-------~~~l~~~~~d~~i~iw~~~~~~---~~------------------~~~~~~~~~v~~i~~~ 89 (389)
.....|++|... |+++|+|+.+..|.|||+.-.. +. ....+|+..|.++.|+
T Consensus 173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 455577777533 5799999999999999974211 10 1123699999999999
Q ss_pred CCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCcee-eeeeeccc
Q 016457 90 GPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQV-ACLEESHV 167 (389)
Q Consensus 90 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~ 167 (389)
..-+ +.|+||+.|.+|++||+.++++..++..|...|.++.|+|.... |++|+.|++|.+.|.|..... ..+ ...
T Consensus 253 ~~~~-nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w--k~~ 329 (463)
T KOG0270|consen 253 RNFR-NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW--KFD 329 (463)
T ss_pred cccc-eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE--Eec
Confidence 8775 79999999999999999999999999999999999999987665 555666999999999953322 222 255
Q ss_pred CCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457 168 EDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG 247 (389)
Q Consensus 168 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 247 (389)
+.|..++|+|..++.+++++.||+|+-+|+|.. .+++..+..|..+|.+++++.....++++++.|+.+++|++...
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~---~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP---GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCC---CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 789999999999889999999999999999943 47889999999999999999777779999999999999998755
Q ss_pred ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 248 QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
.........- .-+...+.++.|+-.. +++.|+..+.++|||+.+...
T Consensus 407 ~~~~v~~~~~----------~~~rl~c~~~~~~~a~-~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 407 SPKSVKEHSF----------KLGRLHCFALDPDVAF-TLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CCcccccccc----------cccceeecccCCCcce-EEEecCccceEEEeecccChh
Confidence 4322221110 1134566777777553 578888889999999987653
No 130
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.7e-28 Score=208.72 Aligned_cols=274 Identities=16% Similarity=0.176 Sum_probs=221.2
Q ss_pred CCccccCCCCeEEEEecCc----ee-----------e-------------------------eeecCcceEEEeecCCCC
Q 016457 12 PKSQSCDNVNSIKRFGLKN----SI-----------Q-------------------------TNFGDDYVFEIVPKNDWS 51 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~~----~~-----------~-------------------------~~~~~~~v~~~~~~~~~~ 51 (389)
....||+.|++|++|++.. .+ + +..+.-.+.+++.+|+|+
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 3466899999999999742 11 0 000145799999999999
Q ss_pred eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC-CCCEEEEEecCCeEEEEEccC-CeEEEEEEcCCCCeEE
Q 016457 52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS-TPHVLHSCSSDGTIRAWDTRS-FHEVWSVTAGSQEIFC 129 (389)
Q Consensus 52 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~ 129 (389)
.||+|..-|.++||++...+....+.+|...|.|+.|+... ..++|++++.|..|.++|+.. ..++.++.+|...|++
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence 99999999999999999988889999999999999998532 125899999999999999964 4577899999999999
Q ss_pred EEEeCCC--CeEEEeecCCeEEEEECcCCceeeeee----ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC
Q 016457 130 FSFGGST--DYLLAAGCGSQIQFWDWRNKKQVACLE----ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND 203 (389)
Q Consensus 130 ~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 203 (389)
+.|.-.+ ..++++|.|..|.+--.+.......+. ......++.|+..|.-+ ++++++.|+.|+|||+.+++ .
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgK-q 630 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGK-Q 630 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccccc-e
Confidence 9998666 679999998887653322111111111 01235689999999996 99999999999999999764 2
Q ss_pred CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCe
Q 016457 204 DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGEN 283 (389)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 283 (389)
.+..+....|++....+... |.+.++++.+.|+++.++|..+++++.+..+ |...|+.+.|.+|-+
T Consensus 631 ~k~FKgs~~~eG~lIKv~lD-PSgiY~atScsdktl~~~Df~sgEcvA~m~G------------HsE~VTG~kF~nDCk- 696 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILD-PSGIYLATSCSDKTLCFVDFVSGECVAQMTG------------HSEAVTGVKFLNDCK- 696 (1080)
T ss_pred eeeecccccCCCceEEEEEC-CCccEEEEeecCCceEEEEeccchhhhhhcC------------cchheeeeeecccch-
Confidence 23333344566778888888 7899999999999999999999999999887 779999999999999
Q ss_pred EEEEEecCCceEEEEEecc
Q 016457 284 LWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 284 ~~l~~g~~dg~i~i~~~~~ 302 (389)
.|++.+.||.|.||.+..
T Consensus 697 -HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 697 -HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -hheeecCCceEEEEECch
Confidence 889999999999999864
No 131
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-28 Score=214.26 Aligned_cols=244 Identities=19% Similarity=0.267 Sum_probs=197.6
Q ss_pred ceEEEeecC-CCCeEEEEecCCeEEEEeCCC---ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457 40 YVFEIVPKN-DWSLMAVSLSTNVVKLYSPVT---GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH 115 (389)
Q Consensus 40 ~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 115 (389)
.+..+.|.. +.++||+++..|.|.+||+.. .+.+..|..|+..++++.|++... .+|++|+.||+|++||++..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeeccc
Confidence 345566764 457999999999999999987 567778899999999999998764 899999999999999999999
Q ss_pred EEEEEEcCCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCC-ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEE
Q 016457 116 EVWSVTAGSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNK-KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193 (389)
Q Consensus 116 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 193 (389)
...++.+....|..+.|+|..+..+++. ..|.+.+||+|.. ++...+. +|.++|.|+.|+|++. +||+|+.|+.|+
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPnr~-~lATGGRDK~vk 245 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPNRE-WLATGGRDKMVK 245 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh-cccCceEEEeecCCCc-eeeecCCCccEE
Confidence 9999998889999999999766655554 5799999999975 4566776 9999999999999884 999999999999
Q ss_pred EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec--CCcEEEEEcCCCc-eeEEeecccccccCCccCCCCC
Q 016457 194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH--IETLSIWDWKDGQ-NVASFENARSLASDSWTLDDVD 270 (389)
Q Consensus 194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 270 (389)
|||+.+.. ...........++.++.|-|.....|++++. |-.|+|||++-.- +..+|.. |..
T Consensus 246 iWd~t~~~---~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e------------H~~ 310 (839)
T KOG0269|consen 246 IWDMTDSR---AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE------------HTD 310 (839)
T ss_pred EEeccCCC---ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec------------cCc
Confidence 99999543 2233334456789999999777767777765 6699999997653 4556665 668
Q ss_pred ceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
.++.++|.. +....+.+++.||.|..-.++.
T Consensus 311 ~vt~i~W~~-~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 311 SVTGIAWDS-GDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred cccceeccC-CCceeeEeecCccHHHHhhhhc
Confidence 889999977 3333788999999887655543
No 132
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8e-27 Score=197.72 Aligned_cols=291 Identities=14% Similarity=0.144 Sum_probs=222.9
Q ss_pred eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457 32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110 (389)
Q Consensus 32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 110 (389)
...+.| .+.|.+++..|.|..||+|+.||+|+||.+.+|.++..+. ..+.|.||+|+|.+...+||++-.+. +.|-+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeC
Confidence 344566 8999999999999999999999999999999999999887 56789999999988633455444333 44444
Q ss_pred ccCC-------------------------------------eEEEEEEcCCCCeEEEEEeCCCCeEEEeec---CCeEEE
Q 016457 111 TRSF-------------------------------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGC---GSQIQF 150 (389)
Q Consensus 111 ~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i 150 (389)
..-| .-++..-.|...|..+.|+..|.+|++... ...|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 3211 012223345788999999999999988765 467999
Q ss_pred EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457 151 WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL 230 (389)
Q Consensus 151 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 230 (389)
+++.......-|. ...+.|.++.|+|..+ +|++++ ...|+|||+.. ...+..+......|..++.+ ++|..|
T Consensus 551 HQLSK~~sQ~PF~-kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~k----qelvKkL~tg~kwiS~msih-p~GDnl 622 (733)
T KOG0650|consen 551 HQLSKRKSQSPFR-KSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSK----QELVKKLLTGSKWISSMSIH-PNGDNL 622 (733)
T ss_pred EecccccccCchh-hcCCceeEEEecCCCc-eEEEEe-ccceEEEehhH----HHHHHHHhcCCeeeeeeeec-CCCCeE
Confidence 9998766655555 4567899999999997 777766 56799999983 34555666666789999999 788899
Q ss_pred EEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC---cc
Q 016457 231 WCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG---AA 306 (389)
Q Consensus 231 ~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~---~~ 306 (389)
++++.|+.+..||+.-. ++.+++.. |...+.+++|++.-. ++++|+.||++.||.-.-.. ..
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~------------H~~avr~Va~H~ryP--Lfas~sdDgtv~Vfhg~VY~Dl~qn 688 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRL------------HEKAVRSVAFHKRYP--LFASGSDDGTVIVFHGMVYNDLLQN 688 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhh------------hhhhhhhhhhccccc--eeeeecCCCcEEEEeeeeehhhhcC
Confidence 99999999999998754 45555555 779999999999777 88999999999998432110 01
Q ss_pred ccCCCeEEEeccccee----eeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457 307 TIGPPEAVLVGGHTAV----VRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356 (389)
Q Consensus 307 ~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW 356 (389)
.+--|+..+. +|... |.++ .|+|...+|+|+|.||+|++|
T Consensus 689 pliVPlK~L~-gH~~~~~~gVLd~---------~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 689 PLIVPLKRLR-GHEKTNDLGVLDT---------IWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CceEeeeecc-CceeecccceEee---------cccCCCceEEecCCCceEEee
Confidence 1123456665 88755 6666 899999999999999999999
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=1.5e-25 Score=192.01 Aligned_cols=264 Identities=11% Similarity=0.097 Sum_probs=196.7
Q ss_pred cccCCCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeE-EEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCC
Q 016457 15 QSCDNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLM-AVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGP 91 (389)
Q Consensus 15 ~s~~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~ 91 (389)
.+.+.|+.|++|++. +.+..+.+...+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+
T Consensus 5 ~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~ 83 (300)
T TIGR03866 5 VSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPN 83 (300)
T ss_pred EEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCC
Confidence 467789999999975 455666655557889999999876 5667789999999999888777765443 567899999
Q ss_pred CCCCEEE-EEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC-eEEEEECcCCceeeeeeecccCC
Q 016457 92 STPHVLH-SCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS-QIQFWDWRNKKQVACLEESHVED 169 (389)
Q Consensus 92 ~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~ 169 (389)
+ +.++ +++.++.|++||+.+.+.+..+..+ ..+.+++|+|++..++++..++ .+.+||.++++....+. ....
T Consensus 84 g--~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~ 158 (300)
T TIGR03866 84 G--KILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQR 158 (300)
T ss_pred C--CEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCC
Confidence 8 5554 4556899999999998888777643 4578899999999988887754 57788998887766554 3345
Q ss_pred eeEEEEecCCCCeEE-EEeCCCcEEEEecCCCCCCCccceeeecc-------CCceeeEEEecCCCcEEEE-EecCCcEE
Q 016457 170 VTQVHFVPNNQNKVV-SASVDGLICTFDTGGDINDDDLLESVINV-------GTSVGKVGFFGETNKHLWC-LTHIETLS 240 (389)
Q Consensus 170 v~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~l~~-~~~d~~i~ 240 (389)
..+++|+|++. .++ ++..++.|++||+.++. .+..+..+ ......++|+ ++++++++ .+.++.+.
T Consensus 159 ~~~~~~s~dg~-~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~s-~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 159 PRFAEFTADGK-ELWVSSEIGGTVSVIDVATRK----VIKKITFEIPGVHPEAVQPVGIKLT-KDGKTAFVALGPANRVA 232 (300)
T ss_pred ccEEEECCCCC-EEEEEcCCCCEEEEEEcCcce----eeeeeeecccccccccCCccceEEC-CCCCEEEEEcCCCCeEE
Confidence 67899999996 664 55569999999999653 12221111 1123467888 66666444 45677899
Q ss_pred EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe-cCCceEEEEEeccCCc
Q 016457 241 IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG-TGAGTVGYFPVNYGGA 305 (389)
Q Consensus 241 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g-~~dg~i~i~~~~~~~~ 305 (389)
+||+.+++.+..+. +...+.+++|+|+|+ +|+++ ..+|.|.+||+.+++.
T Consensus 233 v~d~~~~~~~~~~~-------------~~~~~~~~~~~~~g~--~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 233 VVDAKTYEVLDYLL-------------VGQRVWQLAFTPDEK--YLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EEECCCCcEEEEEE-------------eCCCcceEEECCCCC--EEEEEcCCCCeEEEEECCCCcE
Confidence 99999887776553 225688999999999 66654 5689999999999775
No 134
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.3e-26 Score=199.63 Aligned_cols=319 Identities=14% Similarity=0.191 Sum_probs=249.8
Q ss_pred CCccccCCCCeEEEEecC--c---------------------eeee----------eec-CcceEEEeecCCCCeEEEEe
Q 016457 12 PKSQSCDNVNSIKRFGLK--N---------------------SIQT----------NFG-DDYVFEIVPKNDWSLMAVSL 57 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~--~---------------------~~~~----------~~~-~~~v~~~~~~~~~~~l~~~~ 57 (389)
-..||++.|..||+|++. . .... +.| .+.|+++.|+|.+..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 357899999999999862 1 0101 125 89999999999999999999
Q ss_pred cCCeEEEEeCCCce-------eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---eEEEEEEcCCCCe
Q 016457 58 STNVVKLYSPVTGQ-------YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---HEVWSVTAGSQEI 127 (389)
Q Consensus 58 ~d~~i~iw~~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v 127 (389)
.|.++.+|...+.. .+....+.........|+|++ +.+++-+.-|..++|..... .....+.+|...|
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~--~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V 364 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS--NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV 364 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC--CEEEEecccCcEEEEeccCccceeeccccccccccc
Confidence 99999999876431 122233455678999999999 79999999999999983321 3445677899999
Q ss_pred EEEEEeCCCCeEEEeecCCeEEEEECcCC----ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCC---
Q 016457 128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNK----KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGD--- 200 (389)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--- 200 (389)
..++|+|.|.++++++.|.+-++|-.-.. ..+.+-+ -|...++|++|-+.. ..|++|..+..+++|+....
T Consensus 365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ-iHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~ 442 (764)
T KOG1063|consen 365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ-IHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVK 442 (764)
T ss_pred eeeeecCCCCEEEEeccccceeeecccccccceeeecccc-cccccceeeehccCC-ceeeecccceeeeeecCcHHHHH
Confidence 99999999999999999999999864411 1233333 688899999999864 58999999999999986410
Q ss_pred ----------------------------------------CC-----------------------------CCccceeee
Q 016457 201 ----------------------------------------IN-----------------------------DDDLLESVI 211 (389)
Q Consensus 201 ----------------------------------------~~-----------------------------~~~~~~~~~ 211 (389)
.. ....+.++.
T Consensus 443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY 522 (764)
T KOG1063|consen 443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY 522 (764)
T ss_pred HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence 00 001123456
Q ss_pred ccCCceeeEEEecCCCcEEEEEecCC-----cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEE
Q 016457 212 NVGTSVGKVGFFGETNKHLWCLTHIE-----TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWV 286 (389)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 286 (389)
+|...|.+++.+ ++++++++++... .|++|+..+....+.+.. |.-.|+.++|+|||+ ||
T Consensus 523 GHGyEv~~l~~s-~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~------------HsLTVT~l~FSpdg~--~L 587 (764)
T KOG1063|consen 523 GHGYEVYALAIS-PTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG------------HSLTVTRLAFSPDGR--YL 587 (764)
T ss_pred cCceeEEEEEec-CCCCEEeehhhhCCccceEEEEEeccchhhhheecc------------cceEEEEEEECCCCc--EE
Confidence 778889999999 7889999988754 689999998888888877 779999999999999 99
Q ss_pred EEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 287 IGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 287 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
++.+.|.++.+|........... .... ..|+..|.+. .|+|++.+++|+|.|.+|++|...+.
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~~--fa~~-k~HtRIIWdc---------sW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEFR--FACL-KAHTRIIWDC---------SWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEeecCceEEeeeeecccchhhh--hccc-cccceEEEEc---------ccCcccceeEEecCCceEEEEeccCc
Confidence 99999999999998654431111 1223 4899999999 99999999999999999999999876
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.6e-26 Score=202.81 Aligned_cols=246 Identities=14% Similarity=0.147 Sum_probs=202.3
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc-eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 116 (389)
..+-+.++|.|+|.+|++++.||.|++|+.... +.-..+.-+...|.+++-. + .+|++|+.+++|.+|.+.+++.
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s--~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--S--NHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--c--cceEEeeccceEEEeeCCCCCc
Confidence 566889999999999999999999999987655 3344444477888888764 3 4899999999999999998876
Q ss_pred EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196 (389)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 196 (389)
-..+....-++.+++|+.+|..+++|+.|-.|++.++........+. +|..+|.++.|+|++. +||+.+-||.|++||
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~-fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWD 166 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCC-EEEEEecCceEEEEE
Confidence 65555556789999999888899999999999999999998999998 9999999999999995 999999999999999
Q ss_pred cCCCCCCCcc--c-eeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457 197 TGGDINDDDL--L-ESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF 272 (389)
Q Consensus 197 ~~~~~~~~~~--~-~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (389)
+..+...... + .... .....+..++|+ |++..+++.+.|+.|++|+..+......+.... +...+
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~----------~ss~~ 235 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWH-PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL----------SSSKF 235 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeec-CCCCeEEeeccCCeEEEEccCCceeheeecccc----------cccce
Confidence 9965311110 0 0011 114567889999 454567777889999999999998888887643 44559
Q ss_pred eeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 273 VDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
..+.|+|+|+ |||+++.||.|.|||+++
T Consensus 236 ~~~~wsPnG~--YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 236 SDLQWSPNGK--YIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEEcCCCc--EEeeeccCCcEEEEeccc
Confidence 9999999999 999999999999999997
No 136
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.5e-25 Score=168.07 Aligned_cols=247 Identities=15% Similarity=0.183 Sum_probs=198.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce-----eeeeecCCCCcEEEEEEeCCCC--CCEEEEEe-cCCeEEEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ-----YSGECKGHSSTVNQISFSGPST--PHVLHSCS-SDGTIRAW 109 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~--~~~l~s~~-~dg~i~iw 109 (389)
.+.|+|.+|+|+|.+||+|+.|.+|++.-++... .-..+.-|.+.|..++|..+.+ +.+|++++ .|..|.+-
T Consensus 89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred CccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 8899999999999999999999999998665322 1235677999999999975431 25777765 56788888
Q ss_pred EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-c-----ccCCeeEEEEecCCCCeE
Q 016457 110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-S-----HVEDVTQVHFVPNNQNKV 183 (389)
Q Consensus 110 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~-----~~~~v~~~~~~~~~~~~l 183 (389)
|-..++..+.+.+|.+.|.++--- ++-.+++++.|.+|++||++-..++.++.. . ..+.|.+++..|.|+ +|
T Consensus 169 dc~~g~~~~a~sghtghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll 246 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LL 246 (350)
T ss_pred ecCCCCcceeecCCcccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-ee
Confidence 999999999999999999887533 466666777799999999998888877652 1 235799999999997 99
Q ss_pred EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC
Q 016457 184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS 263 (389)
Q Consensus 184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 263 (389)
++|..|....+||++.+ ..+..+..|...|.++.|+ |...++++++.|..|++-|+. +...+.+...-.
T Consensus 247 ~sg~~dssc~lydirg~----r~iq~f~phsadir~vrfs-p~a~yllt~syd~~ikltdlq-gdla~el~~~vv----- 315 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGG----RMIQRFHPHSADIRCVRFS-PGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVV----- 315 (350)
T ss_pred eeccCCCceEEEEeeCC----ceeeeeCCCccceeEEEeC-CCceEEEEecccceEEEeecc-cchhhcCceEEE-----
Confidence 99999999999999965 5688888999999999999 777899999999999999986 322222211000
Q ss_pred ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457 264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN 301 (389)
Q Consensus 264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 301 (389)
.+|.+.+..+.|+|+.- -+++.+.|.++.+|-+.
T Consensus 316 --~ehkdk~i~~rwh~~d~--sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 --AEHKDKAIQCRWHPQDF--SFISSSADKTATLWALN 349 (350)
T ss_pred --EeccCceEEEEecCccc--eeeeccCcceEEEeccC
Confidence 01778999999999765 56899999999999764
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-25 Score=175.84 Aligned_cols=251 Identities=13% Similarity=0.207 Sum_probs=194.2
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc----eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG----QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS 113 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 113 (389)
.+-|+++.|.+.|+.+|+|+.|++|+|||.+.. .+....+.|.+.|..|.|.+..-++.+|+++.|+++.||.-..
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~ 92 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE 92 (361)
T ss_pred cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence 677999999999999999999999999996543 4566788999999999998876668999999999999997521
Q ss_pred ---------CeEEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCCcee------eeee------ecccCCe
Q 016457 114 ---------FHEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNKKQV------ACLE------ESHVEDV 170 (389)
Q Consensus 114 ---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~------~~~~------~~~~~~v 170 (389)
-....++......|+.+.|.|. |-.|++++.||.++||+.-..-.+ ..+. ..+..+.
T Consensus 93 ~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~ 172 (361)
T KOG2445|consen 93 KSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPC 172 (361)
T ss_pred cccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcc
Confidence 1234566667899999999985 455777777999999987543221 1111 1356678
Q ss_pred eEEEEecCC--CCeEEEEeCC-----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCC---cEEEEEecCCcEE
Q 016457 171 TQVHFVPNN--QNKVVSASVD-----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETN---KHLWCLTHIETLS 240 (389)
Q Consensus 171 ~~~~~~~~~--~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~d~~i~ 240 (389)
.|+.|+|.. +.+|+.|+.+ +.++||...........+..+.+|..+|+.++|.|.-| .+|++++.|| |+
T Consensus 173 ~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~ 251 (361)
T KOG2445|consen 173 FCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VR 251 (361)
T ss_pred eEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EE
Confidence 899999753 2277777765 47899988755434455667778999999999996544 5799999999 99
Q ss_pred EEEcCCCc--------------------eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457 241 IWDWKDGQ--------------------NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV 300 (389)
Q Consensus 241 i~d~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 300 (389)
||.+.... .+..+. +|...|+.+.|+-.|. .|++.+.||.|++|..
T Consensus 252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~------------~H~~~VWrv~wNmtGt--iLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD------------DHNGEVWRVRWNMTGT--ILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEEEeeccchhhhhcccCCCCccccceEEeeecc------------CCCCceEEEEEeeeee--EEeecCCCceeeehhh
Confidence 99987321 111222 2889999999999998 8899999999999976
Q ss_pred ccC
Q 016457 301 NYG 303 (389)
Q Consensus 301 ~~~ 303 (389)
.-.
T Consensus 318 ny~ 320 (361)
T KOG2445|consen 318 NYN 320 (361)
T ss_pred hhh
Confidence 543
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-26 Score=192.21 Aligned_cols=280 Identities=14% Similarity=0.193 Sum_probs=219.1
Q ss_pred cCCCCeEEEEecCc--eeeeee---cCcceEEEeecCCCCeEEEE--ecCCeEEEEeCCCce---e--eeeecCCCCcEE
Q 016457 17 CDNVNSIKRFGLKN--SIQTNF---GDDYVFEIVPKNDWSLMAVS--LSTNVVKLYSPVTGQ---Y--SGECKGHSSTVN 84 (389)
Q Consensus 17 ~~~~~~i~~w~~~~--~~~~~~---~~~~v~~~~~~~~~~~l~~~--~~d~~i~iw~~~~~~---~--~~~~~~~~~~v~ 84 (389)
++....+++||... ....+. ....++++.|+.... |+++ +.|..+++|.-. |+ . +....+. .-.
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd--~~~ 83 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGD--NAF 83 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEeccc-CCCCccceeeccccc--hHH
Confidence 44556899999742 122222 255699999998764 4444 447789999743 33 1 1122222 223
Q ss_pred EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457 85 QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE 164 (389)
Q Consensus 85 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 164 (389)
|++..... .++++|+..+.|+|||++...+.+.++.|.+.|+++.++-.+.+|++++..|.|.|..+.++.....+..
T Consensus 84 Cv~~~s~S--~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 84 CVACASQS--LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHhhhhcc--eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 33333233 5999999999999999998778888999999999999998888888888899999999999988888874
Q ss_pred cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457 165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW 244 (389)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 244 (389)
+....|.-+.|+|..+.+|.+++.+|.|.+||.... .........|..+...++|+|.+..+|++.+.|..|.+||.
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~---sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM---SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCC---CcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence 445667799999998888999999999999999853 23344456788999999999888899999999999999999
Q ss_pred CCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeee
Q 016457 245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVR 324 (389)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~ 324 (389)
...+....+. ...+...++|+++|. +|++|+..|.|..||++..+. |+..+. .|...|+
T Consensus 239 ~s~~s~~~l~-------------y~~Plstvaf~~~G~--~L~aG~s~G~~i~YD~R~~k~-----Pv~v~s-ah~~sVt 297 (673)
T KOG4378|consen 239 RSQASTDRLT-------------YSHPLSTVAFSECGT--YLCAGNSKGELIAYDMRSTKA-----PVAVRS-AHDASVT 297 (673)
T ss_pred ccccccceee-------------ecCCcceeeecCCce--EEEeecCCceEEEEecccCCC-----CceEee-eccccee
Confidence 9776666655 336789999999999 999999999999999998664 566665 8999999
Q ss_pred ec
Q 016457 325 SV 326 (389)
Q Consensus 325 ~~ 326 (389)
++
T Consensus 298 ~v 299 (673)
T KOG4378|consen 298 RV 299 (673)
T ss_pred EE
Confidence 99
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.3e-28 Score=211.27 Aligned_cols=256 Identities=18% Similarity=0.233 Sum_probs=217.1
Q ss_pred CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEE
Q 016457 51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCF 130 (389)
Q Consensus 51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 130 (389)
.+++..-..-.+++|+.+ .+..|...|.++..-..+ ..+++|+.|-.+-+|.+.....+..+.+|..+|.++
T Consensus 5 ~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~--r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSS--RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred cccceeeeeeccccccch------hhhhhhhhhceeeeeccc--eeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 344444445567788754 344688888888885555 799999999999999998888888899999999999
Q ss_pred EEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee
Q 016457 131 SFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV 210 (389)
Q Consensus 131 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 210 (389)
.|++....+.+++.+|+|++||++..+.++++. +|...+.++.|+|-+. +++.|+.|+.+++||.+. ..+...+
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk----~Gc~~~~ 150 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRK----KGCSHTY 150 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceeeeccceE-Eeccccccccceehhhhc----cCceeee
Confidence 999887778888889999999999999999998 9999999999999996 889999999999999993 3566777
Q ss_pred eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec
Q 016457 211 INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT 290 (389)
Q Consensus 211 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~ 290 (389)
.+|...+..+.|+ |+|.+++.++.|..++|||+..|+....|.. |+..+..+.|+|..- ++++|+
T Consensus 151 ~s~~~vv~~l~ls-P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~------------~e~~v~sle~hp~e~--Lla~Gs 215 (825)
T KOG0267|consen 151 KSHTRVVDVLRLS-PDGRWVASGGEDNTVKIWDLTAGKLSKEFKS------------HEGKVQSLEFHPLEV--LLAPGS 215 (825)
T ss_pred cCCcceeEEEeec-CCCceeeccCCcceeeeeccccccccccccc------------ccccccccccCchhh--hhccCC
Confidence 7788889999999 8899999999999999999999999999997 779999999999765 789999
Q ss_pred CCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCC
Q 016457 291 GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDG 351 (389)
Q Consensus 291 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg 351 (389)
.|+++++||+++.+. +.... .....|.+. +|+++++.+++|..+.
T Consensus 216 ~d~tv~f~dletfe~------I~s~~-~~~~~v~~~---------~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 216 SDRTVRFWDLETFEV------ISSGK-PETDGVRSL---------AFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCceeeeeccceeEE------eeccC-CccCCceee---------eecCCceeeecCchhh
Confidence 999999999997655 33332 335677888 9999999988886543
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=3.7e-26 Score=183.35 Aligned_cols=227 Identities=19% Similarity=0.286 Sum_probs=180.4
Q ss_pred CCCCccccCCCCeEEEEecCc------------------eeeeeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCCC
Q 016457 10 SQPKSQSCDNVNSIKRFGLKN------------------SIQTNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVT 69 (389)
Q Consensus 10 ~~~~~~s~~~~~~i~~w~~~~------------------~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~ 69 (389)
..+..|+.+..|.|++|++.. ++.++.+ ...=++++|||-. ..|++|.--+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 445678889999999999742 4555556 6666789999933 3588887788999999888
Q ss_pred cee---eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---eEEEEEEcCCCCeEEEEEeCCCCeEEEee
Q 016457 70 GQY---SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---HEVWSVTAGSQEIFCFSFGGSTDYLLAAG 143 (389)
Q Consensus 70 ~~~---~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 143 (389)
|.- ...+.+|+..|-.++|+|... ..|+||+.||+|+|||++.+ .++. .+.|.+.|+-+.|+..-..|++|+
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~ 321 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGG 321 (440)
T ss_pred CceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecC
Confidence 743 234677999999999999876 79999999999999999987 3333 488999999999997777677778
Q ss_pred cCCeEEEEECcC---CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC------------Cccce
Q 016457 144 CGSQIQFWDWRN---KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND------------DDLLE 208 (389)
Q Consensus 144 ~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------------~~~~~ 208 (389)
.||+++|||+|+ ++++.+++ .|..+|++|.|+|.....|++++.|..|.+||+...... .-+..
T Consensus 322 DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQ 400 (440)
T KOG0302|consen 322 DDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQ 400 (440)
T ss_pred CCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCce
Confidence 899999999995 56788998 899999999999998889999999999999999854320 01112
Q ss_pred eeecc--CCceeeEEEecCCCcEEEEEecCCcE
Q 016457 209 SVINV--GTSVGKVGFFGETNKHLWCLTHIETL 239 (389)
Q Consensus 209 ~~~~~--~~~i~~~~~~~~~~~~l~~~~~d~~i 239 (389)
-++.| +..+..+.|++....++++.+.||.-
T Consensus 401 LLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 401 LLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred eEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 23334 45688899997777789988888843
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-25 Score=182.71 Aligned_cols=281 Identities=15% Similarity=0.178 Sum_probs=205.6
Q ss_pred EEeecCCCCeEEEEecCC-----eEEEEeCCCceeeeeecCC----CCcEEEEEEeCC-----CCCCEEEEEecCCeEEE
Q 016457 43 EIVPKNDWSLMAVSLSTN-----VVKLYSPVTGQYSGECKGH----SSTVNQISFSGP-----STPHVLHSCSSDGTIRA 108 (389)
Q Consensus 43 ~~~~~~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~----~~~v~~i~~~~~-----~~~~~l~s~~~dg~i~i 108 (389)
.+..-|+.++|+++-.+. .|++|+-..... +-.| ...-.|++|... +.++++|.|+.|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nl---YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENL---YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcce---eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 455667666666664432 456666432111 1112 123356777543 23479999999999999
Q ss_pred EEccCCe---EEEE------------------EEcCCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeeeeecc
Q 016457 109 WDTRSFH---EVWS------------------VTAGSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACLEESH 166 (389)
Q Consensus 109 wd~~~~~---~~~~------------------~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~ 166 (389)
||+.-.. +..+ -.+|+..|.+++|+..-..++++| .|.+|++||+.++++..++. .|
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~ 285 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HH 285 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hc
Confidence 9986321 1111 225777888999987666655555 49999999999999999998 89
Q ss_pred cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457 167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD 246 (389)
Q Consensus 167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 246 (389)
.+.|.++.|+|..+..|++|+.|++|.++|.|. ...........+.|-.++|.+.....+++++.||+++-+|+++
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~----~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~ 361 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD----PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN 361 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccC----ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCC
Confidence 999999999999988999999999999999993 2223333445678999999987888899999999999999997
Q ss_pred C-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccce---e
Q 016457 247 G-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA---V 322 (389)
Q Consensus 247 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~---~ 322 (389)
. +++.++.. |.+.|.++++++.-.. ++++++.|+.|++|++..... ... ..|.. .
T Consensus 362 ~~~~vwt~~A------------Hd~~ISgl~~n~~~p~-~l~t~s~d~~Vklw~~~~~~~-------~~v-~~~~~~~~r 420 (463)
T KOG0270|consen 362 PGKPVWTLKA------------HDDEISGLSVNIQTPG-LLSTASTDKVVKLWKFDVDSP-------KSV-KEHSFKLGR 420 (463)
T ss_pred CCCceeEEEe------------ccCCcceEEecCCCCc-ceeeccccceEEEEeecCCCC-------ccc-ccccccccc
Confidence 6 88888887 7799999999987665 588999999999999986553 111 13332 2
Q ss_pred eeeccCCCcccCCCCCCCce-eEEEecCCCeEEEEeccCC
Q 016457 323 VRSVLPMPSVQGRPAQSHGI-FGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 323 v~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~v~iW~~~~~ 361 (389)
..|. ++.|+-. +|+.||..+.+++||+...
T Consensus 421 l~c~---------~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 421 LHCF---------ALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eeec---------ccCCCcceEEEecCccceEEEeecccC
Confidence 2333 5555543 4678888889999998765
No 142
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.3e-25 Score=191.95 Aligned_cols=322 Identities=16% Similarity=0.173 Sum_probs=241.1
Q ss_pred CccccCCCCeEEEEecCce----eee-----eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc---eeeeeecCC
Q 016457 13 KSQSCDNVNSIKRFGLKNS----IQT-----NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG---QYSGECKGH 79 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~~----~~~-----~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~ 79 (389)
..-+++.|.++.+|...+. +.. .-| .......-|+|+++.+++-+..|..++|..++. .....+.||
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH 360 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH 360 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence 4567899999999987642 111 112 455889999999999999999999999983321 344556899
Q ss_pred CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---------------------------------------------
Q 016457 80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF--------------------------------------------- 114 (389)
Q Consensus 80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------------------------------------------- 114 (389)
.+.|.+++|.|.| ++|++.+.|.+-|+|-.-..
T Consensus 361 ~~~V~dv~W~psG--eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 361 VDGVKDVDWDPSG--EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred cccceeeeecCCC--CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence 9999999999999 79999999999888753300
Q ss_pred -----------------------------------------------------------------------------eEE
Q 016457 115 -----------------------------------------------------------------------------HEV 117 (389)
Q Consensus 115 -----------------------------------------------------------------------------~~~ 117 (389)
-.+
T Consensus 439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv 518 (764)
T KOG1063|consen 439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV 518 (764)
T ss_pred HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence 112
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeec-----CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcE
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI 192 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 192 (389)
+++.+|...|.+++.+|+++.+++++. ...|++|+..+...++.+. +|.-.|+.|+|+|+++ +|++.+.|+++
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~l~FSpdg~-~LLsvsRDRt~ 596 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-GHSLTVTRLAFSPDGR-YLLSVSRDRTV 596 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-ccceEEEEEEECCCCc-EEEEeecCceE
Confidence 334567788999999998888888876 3579999999888888888 9999999999999996 99999999999
Q ss_pred EEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC--ceeEEeecccccccCCccCCCCC
Q 016457 193 CTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG--QNVASFENARSLASDSWTLDDVD 270 (389)
Q Consensus 193 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 270 (389)
.+|.................|..-|.+..|+ |++.++++++.|++|++|..... +.+..+...+ +..
T Consensus 597 sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~-pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~----------~~~ 665 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFRFACLKAHTRIIWDCSWS-PDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK----------FSL 665 (764)
T ss_pred EeeeeecccchhhhhccccccceEEEEcccC-cccceeEEecCCceEEEEeccCchhhhhhhhchhc----------cCC
Confidence 9999864433333344467788999999999 77888999999999999998877 4444433222 668
Q ss_pred ceeeecccCCC---CeEEEEEecCCceEEEEEeccC-CccccCC-----CeEEEecccceeeeeccCCCcccCCCCCCC-
Q 016457 271 YFVDCHYPGEG---ENLWVIGGTGAGTVGYFPVNYG-GAATIGP-----PEAVLVGGHTAVVRSVLPMPSVQGRPAQSH- 340 (389)
Q Consensus 271 ~i~~~~~~~~~---~~~~l~~g~~dg~i~i~~~~~~-~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~- 340 (389)
.|+.+++.|-. +.-.++.|-+.|.|.+|..... +....+. .+... .+|...|+.+ .|+|.
T Consensus 666 aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~aV~rl---------~w~p~~ 735 (764)
T KOG1063|consen 666 AVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCAT-IGPDSAVNRL---------LWRPTC 735 (764)
T ss_pred ceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccc-cChHHhhhee---------Eecccc
Confidence 89998887742 1115788999999999986521 1111110 01111 2456667776 55533
Q ss_pred ---------ceeEEEecCCCeEEEEecc
Q 016457 341 ---------GIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 341 ---------~~~l~s~~~dg~v~iW~~~ 359 (389)
...|++|++|..+|+++++
T Consensus 736 ~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 736 SDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccccccccceeEEeeecccceeEEeecc
Confidence 3457999999999999875
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=185.09 Aligned_cols=274 Identities=14% Similarity=0.182 Sum_probs=225.7
Q ss_pred CCccccCCCCeEEEEecCc----eeeeeec-CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceee--eeecCCC-Cc
Q 016457 12 PKSQSCDNVNSIKRFGLKN----SIQTNFG-DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYS--GECKGHS-ST 82 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~~----~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~-~~ 82 (389)
|..-+++.|+++++|.+.. .++.+.- ..+|.+..|.|+|. .+++++.....+.||+.+.+.. ....++. ..
T Consensus 226 plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence 4456789999999999853 3444444 88999999999998 8999999999999999987643 3344443 45
Q ss_pred EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee
Q 016457 83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL 162 (389)
Q Consensus 83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 162 (389)
+.....+|++ ++|+..+..|.|.+-...+++.+.+++. .+.|..++|+.++..|++++.+|.|.+||++...++.++
T Consensus 306 ~e~FeVShd~--~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 306 MERFEVSHDS--NFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred hheeEecCCC--CeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 7778889999 7999999999999999999999999987 589999999999999999999999999999999999888
Q ss_pred eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC--CCCccceeeeccCCceeeEEEecCCCcEEEEEec--CCc
Q 016457 163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI--NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH--IET 238 (389)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~ 238 (389)
.....-.-++++.++++. +||+|+..|.|.|||..+.. ...+++..+......|+++.|+ ++.++|+.++. +..
T Consensus 383 ~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn-~d~qiLAiaS~~~kna 460 (514)
T KOG2055|consen 383 VDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN-HDAQILAIASRVKKNA 460 (514)
T ss_pred eecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC-cchhhhhhhhhccccc
Confidence 732233346778889996 99999999999999977432 2356677777778899999999 78888887775 568
Q ss_pred EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457 239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN 301 (389)
Q Consensus 239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 301 (389)
+++-.+.+......++.... ..+.+++++|+|.+. |++.|..+|.+.+|.+.
T Consensus 461 lrLVHvPS~TVFsNfP~~n~---------~vg~vtc~aFSP~sG--~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 461 LRLVHVPSCTVFSNFPTSNT---------KVGHVTCMAFSPNSG--YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEEeccceeeeccCCCCCC---------cccceEEEEecCCCc--eEEeecCCCceeeEeec
Confidence 99988887777766665321 347899999999998 99999999999999874
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.3e-24 Score=184.46 Aligned_cols=313 Identities=10% Similarity=0.077 Sum_probs=236.5
Q ss_pred ccccCCCCeEEEEecCc---eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457 14 SQSCDNVNSIKRFGLKN---SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF 88 (389)
Q Consensus 14 ~~s~~~~~~i~~w~~~~---~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~ 88 (389)
.|-+-.+|.|.+|++.. +...+.+ +..|-+++|++.+ .|.+.+.+|.|.-||+.+++....+....+.|++++.
T Consensus 40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai 118 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAI 118 (691)
T ss_pred eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEe
Confidence 56677899999999974 4455666 8899999999655 6777777999999999999999999999999999999
Q ss_pred eCCCCCCEEEEEecCCeEEEEEccCCeEEEE--EEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee---
Q 016457 89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS--VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--- 163 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--- 163 (389)
+|.+ ..++.|+.||.+..++...++.... +...++.|.+++|+|++..++.|+.||.|++||..++..+....
T Consensus 119 ~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~ 196 (691)
T KOG2048|consen 119 NPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQL 196 (691)
T ss_pred CCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecc
Confidence 9998 7999999999888888877766543 33447899999999999999999999999999999887765222
Q ss_pred ----ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcE
Q 016457 164 ----ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239 (389)
Q Consensus 164 ----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i 239 (389)
....--|.++.|-.++ .|++|...|+|.+||...+ ..+.....|...|.+++.. ++++.+++++.|+.|
T Consensus 197 d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~Lav~-~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 197 DRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLALAVA-DNEDRVFSAGVDPKI 269 (691)
T ss_pred cccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCc----chhhhhhhhhcceeEEEEc-CCCCeEEEccCCCce
Confidence 1123347788888764 8999999999999999954 5677778899999999998 778899999999999
Q ss_pred EEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccc
Q 016457 240 SIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGH 319 (389)
Q Consensus 240 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h 319 (389)
..|...+.+..-.....+. .|...+.+++..++ .+++|+.|+.+.+-.....+. ..|
T Consensus 270 i~~~~~~~~~~wv~~~~r~--------~h~hdvrs~av~~~----~l~sgG~d~~l~i~~s~~~~~-----------~~h 326 (691)
T KOG2048|consen 270 IQYSLTTNKSEWVINSRRD--------LHAHDVRSMAVIEN----ALISGGRDFTLAICSSREFKN-----------MDH 326 (691)
T ss_pred EEEEecCCccceeeecccc--------CCcccceeeeeecc----eEEecceeeEEEEccccccCc-----------hhh
Confidence 9998876644221111111 27788999999886 689999999999987765332 123
Q ss_pred ceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCccc
Q 016457 320 TAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEI 364 (389)
Q Consensus 320 ~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~~ 364 (389)
. -...+|..... ...+..+.++.-. +..+.+|.+......
T Consensus 327 ~--~~~~~p~~~~v--~~a~~~~L~~~w~-~h~v~lwrlGS~~~~ 366 (691)
T KOG2048|consen 327 R--QKNLFPASDRV--SVAPENRLLVLWK-AHGVDLWRLGSVILQ 366 (691)
T ss_pred h--cccccccccee--ecCccceEEEEec-cccccceeccCcccc
Confidence 3 11222222332 3334444444433 456777777766433
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5.9e-28 Score=208.70 Aligned_cols=245 Identities=17% Similarity=0.253 Sum_probs=211.7
Q ss_pred eEEEEecCceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe
Q 016457 22 SIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS 101 (389)
Q Consensus 22 ~i~~w~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~ 101 (389)
.+++|+..+... +...|.++..-..++.+++|+.|..+-+|.+..-..+..+.+|..+|.++.|++.. .+|++|.
T Consensus 15 ~Lr~~~~~~~~~---hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E--~Llaags 89 (825)
T KOG0267|consen 15 KLRVWDTREFVA---HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE--RLLAAGS 89 (825)
T ss_pred ccccccchhhhh---hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch--hhhcccc
Confidence 455666443211 14566677766677899999999999999988777788899999999999999988 7999999
Q ss_pred cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCC
Q 016457 102 SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN 181 (389)
Q Consensus 102 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 181 (389)
.+|+|++||+...+.++++.+|...+.++.|+|.+.+.+.++.|+.+++||++...+...+. +|...+.++.|+|+|.
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~Gr- 167 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPDGR- 167 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecCCCc-
Confidence 99999999999999999999999999999999999999888889999999999888999998 7999999999999997
Q ss_pred eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccccc
Q 016457 182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLAS 261 (389)
Q Consensus 182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 261 (389)
+++.+++|..++|||+..+ +....+..|...+..+.|+ +..-+++.|+.|+++++||+++.+.+.....
T Consensus 168 ~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~h-p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~------ 236 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFH-PLEVLLAPGSSDRTVRFWDLETFEVISSGKP------ 236 (825)
T ss_pred eeeccCCcceeeeeccccc----ccccccccccccccccccC-chhhhhccCCCCceeeeeccceeEEeeccCC------
Confidence 9999999999999999844 5667777899999999998 6667889999999999999998888777665
Q ss_pred CCccCCCCCceeeecccCCCCeEEEEEecCC
Q 016457 262 DSWTLDDVDYFVDCHYPGEGENLWVIGGTGA 292 (389)
Q Consensus 262 ~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d 292 (389)
....|.+..|+|++. .+.+|...
T Consensus 237 ------~~~~v~~~~fn~~~~--~~~~G~q~ 259 (825)
T KOG0267|consen 237 ------ETDGVRSLAFNPDGK--IVLSGEQI 259 (825)
T ss_pred ------ccCCceeeeecCCce--eeecCchh
Confidence 347899999999998 66777554
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.7e-25 Score=179.58 Aligned_cols=254 Identities=14% Similarity=0.171 Sum_probs=188.9
Q ss_pred CcceEEEeecCCC--CeEEEEecCCeEEEEeCCC----------------ceeeeeecCCCCcEEEEEEeCCCCCCEEEE
Q 016457 38 DDYVFEIVPKNDW--SLMAVSLSTNVVKLYSPVT----------------GQYSGECKGHSSTVNQISFSGPSTPHVLHS 99 (389)
Q Consensus 38 ~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~~~~----------------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s 99 (389)
.+.++.+.-.+-+ .+.|+=+..|.|+||++.. .+++.++.+|...=.+++|+|-.. ..|+|
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g~Lls 229 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-GRLLS 229 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-ccccc
Confidence 4455555555544 4555666789999999731 246778889999999999999553 37999
Q ss_pred EecCCeEEEEEccCCeEE---EEEEcCCCCeEEEEEeCCCCeEEEe-ecCCeEEEEECcCCc---eeeeeeecccCCeeE
Q 016457 100 CSSDGTIRAWDTRSFHEV---WSVTAGSQEIFCFSFGGSTDYLLAA-GCGSQIQFWDWRNKK---QVACLEESHVEDVTQ 172 (389)
Q Consensus 100 ~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~ 172 (389)
|..-+.|++|...++.-. ..|.+|...|..++|+|....++++ +.||+|+|||+|.+. .+.+ + +|.+.|+.
T Consensus 230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k-Ah~sDVNV 307 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K-AHNSDVNV 307 (440)
T ss_pred CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e-ccCCceee
Confidence 999999999999887532 3466799999999999987766555 459999999999883 2333 3 89999999
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee--
Q 016457 173 VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV-- 250 (389)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-- 250 (389)
|.|+...+ +|++|+.||+++|||+|..+ ...++..+..|..+|+++.|+|.+...|++++.|.+|.+||+....-.
T Consensus 308 ISWnr~~~-lLasG~DdGt~~iwDLR~~~-~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 308 ISWNRREP-LLASGGDDGTLSIWDLRQFK-SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred EEccCCcc-eeeecCCCceEEEEEhhhcc-CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 99999987 99999999999999999654 447888999999999999999888889999999999999998632110
Q ss_pred ---EEeecccccccC-CccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457 251 ---ASFENARSLASD-SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF 298 (389)
Q Consensus 251 ---~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~ 298 (389)
....+...++.+ .+-..-...+-.+.|+++-.. +|++.+.|| +.||
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG-~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG-LLVSTAIDG-FNVF 435 (440)
T ss_pred hccccccchhcCCceeEEEecchhHhhhheeccCCCC-eEEEecccc-eeEE
Confidence 000000000000 000012356778899988666 577777888 4444
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.4e-27 Score=212.00 Aligned_cols=272 Identities=17% Similarity=0.259 Sum_probs=219.2
Q ss_pred cccCCCCeEEEEecCc--------eeeeeecCcceEEEeecCCCCe----EEEEecCCeEEEEeCCC---c---eeeeee
Q 016457 15 QSCDNVNSIKRFGLKN--------SIQTNFGDDYVFEIVPKNDWSL----MAVSLSTNVVKLYSPVT---G---QYSGEC 76 (389)
Q Consensus 15 ~s~~~~~~i~~w~~~~--------~~~~~~~~~~v~~~~~~~~~~~----l~~~~~d~~i~iw~~~~---~---~~~~~~ 76 (389)
++.+.+.++.+|.+.. .+-.+......+.++|.+.|.. ||.|..||.|.+||... + ..+.++
T Consensus 33 ~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~ 112 (1049)
T KOG0307|consen 33 ASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK 112 (1049)
T ss_pred cccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh
Confidence 3456677777777642 1222222778899999987765 89999999999999764 2 345667
Q ss_pred cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE--cCCCCeEEEEEeCCCCeEEEeec-CCeEEEEEC
Q 016457 77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT--AGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDW 153 (389)
Q Consensus 77 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~ 153 (389)
..|++.|..+.|++... ++|++|+.||.|.|||+...+.-.+.. ...+.|.+++|+..-.++++++. +|.+.|||+
T Consensus 113 ~~h~G~V~gLDfN~~q~-nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDl 191 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQG-NLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDL 191 (1049)
T ss_pred cccCCceeeeeccccCC-ceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccc
Confidence 78999999999999884 699999999999999998754433331 13678999999977677666655 789999999
Q ss_pred cCCceeeeeeecccC--CeeEEEEecCCCCeEEEEeCCC---cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457 154 RNKKQVACLEESHVE--DVTQVHFVPNNQNKVVSASVDG---LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK 228 (389)
Q Consensus 154 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (389)
|..+++..+. .+.. .+..++|+|+....+++++.|. .|.+||+|. ...+++.+..|...|.++.|++.|..
T Consensus 192 r~~~pii~ls-~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~---assP~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 192 RKKKPIIKLS-DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF---ASSPLKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred cCCCcccccc-cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc---cCCchhhhcccccceeeeccCCCCch
Confidence 9998888776 3333 4788999999988888888764 499999993 34566777899999999999988889
Q ss_pred EEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457 229 HLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG 304 (389)
Q Consensus 229 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~ 304 (389)
+|++++.|+.|.+|+.++++.+..+.. ...++..+.|.|.... .+++.+.||.|.||.+.+..
T Consensus 268 lllSsgkD~~ii~wN~~tgEvl~~~p~------------~~nW~fdv~w~pr~P~-~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 268 LLLSSGKDNRIICWNPNTGEVLGELPA------------QGNWCFDVQWCPRNPS-VMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhhcccCCCCeeEecCCCceEeeecCC------------CCcceeeeeecCCCcc-hhhhheeccceeeeeeecCC
Confidence 999999999999999999999999886 3488999999998764 46888999999999998765
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.4e-25 Score=195.45 Aligned_cols=252 Identities=13% Similarity=0.159 Sum_probs=206.2
Q ss_pred cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC
Q 016457 77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN 155 (389)
Q Consensus 77 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 155 (389)
.+|+...+.|+|.|+| ++|++++.||.|++|+..+. +.-.++..+...|.+++. ...++++++.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~g--efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG--EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCC--CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 3588899999999999 79999999999999998765 444445546788888887 466999999999999999998
Q ss_pred CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec
Q 016457 156 KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH 235 (389)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (389)
++.-..+. ...-++++++++.+|. +++.|+.|-.|++.++.. ......+.+|..+|.++.|+ |++++|++.+.
T Consensus 86 ~~~~~iL~-Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D----~s~~~~lrgh~apVl~l~~~-p~~~fLAvss~ 158 (933)
T KOG1274|consen 86 GEEDTILA-RFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDD----SSQEKVLRGHDAPVLQLSYD-PKGNFLAVSSC 158 (933)
T ss_pred CCccceee-eeeccceEEEEecCCc-EEEeecCceeEEEEeccc----cchheeecccCCceeeeeEc-CCCCEEEEEec
Confidence 87655555 5668899999999995 999999999999999984 35677888999999999999 78899999999
Q ss_pred CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEE
Q 016457 236 IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVL 315 (389)
Q Consensus 236 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~ 315 (389)
||.|++||+.++.+.+++.+...-... .....+..++|+|++. -++....|+.|++|+..+... ...+
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~----~~s~i~~~~aW~Pk~g--~la~~~~d~~Vkvy~r~~we~------~f~L 226 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEF----ILSRICTRLAWHPKGG--TLAVPPVDNTVKVYSRKGWEL------QFKL 226 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccc----cccceeeeeeecCCCC--eEEeeccCCeEEEEccCCcee------heee
Confidence 999999999999888777654321111 0235678899999977 446666899999999988665 4444
Q ss_pred ecccc-eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457 316 VGGHT-AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD 360 (389)
Q Consensus 316 ~~~h~-~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~ 360 (389)
...+. ..+..+ .|||.|+|||+++.||.|-|||.+.
T Consensus 227 r~~~~ss~~~~~---------~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 227 RDKLSSSKFSDL---------QWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccccceEEE---------EEcCCCcEEeeeccCCcEEEEeccc
Confidence 43333 337777 9999999999999999999999995
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.3e-24 Score=168.74 Aligned_cols=259 Identities=19% Similarity=0.274 Sum_probs=188.2
Q ss_pred cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC----eEEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEE
Q 016457 77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF----HEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQF 150 (389)
Q Consensus 77 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i 150 (389)
.+|.+-|+++.|.+.| +.+++|+.|++|+|||.++. .+....+.|.+.|..+.|.+. |+.+++++.|+++.|
T Consensus 10 s~h~DlihdVs~D~~G--RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG--RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccC--ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 3688999999999999 79999999999999997543 466778899999999999643 566777777999999
Q ss_pred EECcC---------CceeeeeeecccCCeeEEEEecCC-CCeEEEEeCCCcEEEEecCCCCCC--Cccceee-------e
Q 016457 151 WDWRN---------KKQVACLEESHVEDVTQVHFVPNN-QNKVVSASVDGLICTFDTGGDIND--DDLLESV-------I 211 (389)
Q Consensus 151 wd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~-------~ 211 (389)
|.-.. .....++. .....|+.+.|.|.. .-.+++++.||.++||+.-...+. .....++ .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 97521 12234454 567889999999963 147999999999999998633211 1111111 1
Q ss_pred ccCCceeeEEEecC--CCcEEEEEecC-----CcEEEEEcCCCc----eeEEeecccccccCCccCCCCCceeeecccCC
Q 016457 212 NVGTSVGKVGFFGE--TNKHLWCLTHI-----ETLSIWDWKDGQ----NVASFENARSLASDSWTLDDVDYFVDCHYPGE 280 (389)
Q Consensus 212 ~~~~~i~~~~~~~~--~~~~l~~~~~d-----~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 280 (389)
.+..+..++.|++. ...+|++|+.+ +.++||...... .+.++.+ |.++|.+++|.|+
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d------------~~dpI~di~wAPn 234 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD------------HTDPIRDISWAPN 234 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC------------CCCcceeeeeccc
Confidence 34567788888742 23577777766 478888765432 2223333 8899999999998
Q ss_pred CCe--EEEEEecCCceEEEEEeccCCc--------c-----ccC-CCeEEEecccceeeeeccCCCcccCCCCCCCceeE
Q 016457 281 GEN--LWVIGGTGAGTVGYFPVNYGGA--------A-----TIG-PPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG 344 (389)
Q Consensus 281 ~~~--~~l~~g~~dg~i~i~~~~~~~~--------~-----~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l 344 (389)
-.+ -+|++++.|| |+||.+..... . .+. ..+..+ .+|.+.|..+ .|+-.|..|
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv---------~wNmtGtiL 303 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRV---------RWNMTGTIL 303 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEE---------EEeeeeeEE
Confidence 432 2478999999 99999984220 0 000 112233 4899999999 999999999
Q ss_pred EEecCCCeEEEEeccCC
Q 016457 345 WTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 345 ~s~~~dg~v~iW~~~~~ 361 (389)
+|.|.||+||+|+.+-.
T Consensus 304 sStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKANYN 320 (361)
T ss_pred eecCCCceeeehhhhhh
Confidence 99999999999997744
No 150
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=3.5e-24 Score=166.81 Aligned_cols=269 Identities=16% Similarity=0.195 Sum_probs=205.8
Q ss_pred ccccCCCCeEEEEecCcee---------e-----eee---c-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCceeee
Q 016457 14 SQSCDNVNSIKRFGLKNSI---------Q-----TNF---G-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQYSG 74 (389)
Q Consensus 14 ~~s~~~~~~i~~w~~~~~~---------~-----~~~---~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~ 74 (389)
--+++.||.|-+||+++.. + .-. + +-+|.++.|-| |...+.+++.|.++++||.++.+...
T Consensus 59 mlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~ 138 (397)
T KOG4283|consen 59 MLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV 138 (397)
T ss_pred EeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE
Confidence 4578899999999986411 0 011 1 56788888888 55688899999999999999998888
Q ss_pred eecCCCCcEEEEEEeCCCCC-CEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEE
Q 016457 75 ECKGHSSTVNQISFSGPSTP-HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWD 152 (389)
Q Consensus 75 ~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd 152 (389)
.|+ ..+.|..-+++|-... -++|+|..|-.|++-|+.+|...+++.+|...|.++.|+|...+++++++ ||.|++||
T Consensus 139 ~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 139 DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWD 217 (397)
T ss_pred Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEE
Confidence 887 5678888889885431 36777888889999999999999999999999999999999998777665 99999999
Q ss_pred CcCC-ceeeee-------------eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC---C
Q 016457 153 WRNK-KQVACL-------------EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG---T 215 (389)
Q Consensus 153 ~~~~-~~~~~~-------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~ 215 (389)
++.. .+...+ ..+|.+.+..++|..++. ++++++.|..+++|+..++.+...........+ -
T Consensus 218 iRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~ 296 (397)
T KOG4283|consen 218 IRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSF 296 (397)
T ss_pred eecccceeEEeecccCccCccccccccccceeeeeeecccch-hhhhccCccceEEeecccCcccccccccccccccccc
Confidence 9853 122111 136888999999999996 999999999999999997754333222221111 1
Q ss_pred ceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceE
Q 016457 216 SVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV 295 (389)
Q Consensus 216 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i 295 (389)
.+. +. + .+...++.--.++.+.++++-.+..+..+.. |-..+.+..+-|+-+ -..+|..|+.|
T Consensus 297 ~~~-~~-~-~~s~vfv~~p~~~~lall~~~sgs~ir~l~~------------h~k~i~c~~~~~~fq--~~~tg~~d~ni 359 (397)
T KOG4283|consen 297 AVH-IQ-S-MDSDVFVLFPNDGSLALLNLLEGSFVRRLST------------HLKRINCAAYRPDFE--QCFTGDMNGNI 359 (397)
T ss_pred eEE-Ee-e-cccceEEEEecCCeEEEEEccCceEEEeeec------------ccceeeEEeecCchh--hhhccccCCcc
Confidence 111 22 2 2333444445568999999999999998887 558899999999887 45899999999
Q ss_pred EEEEec
Q 016457 296 GYFPVN 301 (389)
Q Consensus 296 ~i~~~~ 301 (389)
..|...
T Consensus 360 ~~w~p~ 365 (397)
T KOG4283|consen 360 YMWSPA 365 (397)
T ss_pred cccccc
Confidence 999774
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=7.4e-25 Score=187.19 Aligned_cols=273 Identities=16% Similarity=0.159 Sum_probs=197.7
Q ss_pred CccccCCCCeEEEEecCceeee-----ee----cCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee--ecCCCC
Q 016457 13 KSQSCDNVNSIKRFGLKNSIQT-----NF----GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE--CKGHSS 81 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~~~~~-----~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~--~~~~~~ 81 (389)
..|-+..+|.|.++|....... +. +..+|..+.|-|....|++++.|.++++||++++++... +.+|..
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~ 145 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG 145 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc
Confidence 4555677899999998642222 22 278999999999778899999999999999999888776 889999
Q ss_pred cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe---------------------------EEEEEEcCC----CCeEEE
Q 016457 82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH---------------------------EVWSVTAGS----QEIFCF 130 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~----~~v~~~ 130 (389)
.|.+++|.|.+. ..|++|+.||.|.|||++-.. .+...+.+. +.|+.+
T Consensus 146 SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 146 SVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred ccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 999999999885 799999999999999987321 011112222 235556
Q ss_pred EEeCCCCeEEEeec-CCeEEEEECcCCceeeeee-------ecc---cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457 131 SFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLE-------ESH---VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG 199 (389)
Q Consensus 131 ~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~-------~~~---~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (389)
.|- ++..|+++|. |+.|++||++......... ..| ...+.++.....|. +|++.+.|+.|+.|++.+
T Consensus 225 ~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 225 LFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccc
Confidence 665 8888998888 9999999999765432221 012 23477888888886 666666699999999995
Q ss_pred CCCCCccceeeeccCC-c-eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE-EeecccccccCCccCCCCCceeeec
Q 016457 200 DINDDDLLESVINVGT-S-VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA-SFENARSLASDSWTLDDVDYFVDCH 276 (389)
Q Consensus 200 ~~~~~~~~~~~~~~~~-~-i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (389)
.. ..++..+.++.. . -..-..+ +++.++++|+.|...++|.+.+.+.-- .+.+ |.-.|+.++
T Consensus 303 ~s--~sP~~~~sg~~~~sf~vks~lS-pd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G------------ht~eVt~V~ 367 (720)
T KOG0321|consen 303 LS--ISPVAEFSGKLNSSFYVKSELS-PDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG------------HTREVTTVR 367 (720)
T ss_pred cC--cCchhhccCcccceeeeeeecC-CCCceEeccCCCcceeeeeecCccCChhhhhC------------cceEEEEEe
Confidence 42 122222222211 1 1122234 788999999999999999998765433 3333 778899999
Q ss_pred ccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457 277 YPGEGENLWVIGGTGAGTVGYFPVNYGG 304 (389)
Q Consensus 277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~ 304 (389)
|.|.... =+++++.|..++||++..+-
T Consensus 368 w~pS~~t-~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 368 WLPSATT-PVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eccccCC-CceeeccCcceEEEeccCch
Confidence 9886433 25777999999999996653
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=2.4e-24 Score=170.12 Aligned_cols=300 Identities=15% Similarity=0.168 Sum_probs=215.0
Q ss_pred CcceEEEeecC-----CCCeEEEEecCCeEEEEeCCCc---eeeeeec--CCCCcEEEEEEeCCCC--CCEEEEEecCCe
Q 016457 38 DDYVFEIVPKN-----DWSLMAVSLSTNVVKLYSPVTG---QYSGECK--GHSSTVNQISFSGPST--PHVLHSCSSDGT 105 (389)
Q Consensus 38 ~~~v~~~~~~~-----~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~--~~~~~v~~i~~~~~~~--~~~l~s~~~dg~ 105 (389)
+.+|..++|++ .-..+|+++ ...+.+|..... ..++.+. .|.+....++|+-+.. ..++|.|+.-|.
T Consensus 38 ~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv 116 (385)
T KOG1034|consen 38 NKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV 116 (385)
T ss_pred CCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence 67899999984 224667766 567889986532 3344442 3777888899976532 258999999999
Q ss_pred EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeE-EEeecCCeEEEEECcCCceeeeee--ecccCCeeEEEEecCCCCe
Q 016457 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYL-LAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVHFVPNNQNK 182 (389)
Q Consensus 106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~ 182 (389)
|+|.|+.+++....+.+|...|+.+.++|...++ ++++.|..|++|++++..++..+- ++|...|.++.|++++. +
T Consensus 117 IrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~ 195 (385)
T KOG1034|consen 117 IRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD-R 195 (385)
T ss_pred EEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC-e
Confidence 9999999999999999999999999999987654 555669999999999999887765 48999999999999997 9
Q ss_pred EEEEeCCCcEEEEecCCCCC--------------CC-------cc---ceeeeccCCceeeEEEecCCCcEEEEEecCCc
Q 016457 183 VVSASVDGLICTFDTGGDIN--------------DD-------DL---LESVINVGTSVGKVGFFGETNKHLWCLTHIET 238 (389)
Q Consensus 183 l~~~~~d~~i~i~d~~~~~~--------------~~-------~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 238 (389)
|++++.|..+++|++....- .. .. ......|...|.++.|. ++++++-+.++.
T Consensus 196 i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscena 272 (385)
T KOG1034|consen 196 IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENA 272 (385)
T ss_pred eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCce
Confidence 99999999999999983210 00 00 01223466777888887 468999999999
Q ss_pred EEEEEc-CCCceeEEeecccccccC--CccCCCCCce--eeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeE
Q 016457 239 LSIWDW-KDGQNVASFENARSLASD--SWTLDDVDYF--VDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEA 313 (389)
Q Consensus 239 i~i~d~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~i--~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~ 313 (389)
|..|.. +-.+.++........... .... ....+ ...+|.|-++ +|+.|...|.|++||++...... ..
T Consensus 273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~-~~c~iWfirf~~d~~~~--~la~gnq~g~v~vwdL~~~ep~~----~t 345 (385)
T KOG1034|consen 273 IVCWKPGKLEESIHNVKPPESATTILGEFDY-PMCDIWFIRFAFDPWQK--MLALGNQSGKVYVWDLDNNEPPK----CT 345 (385)
T ss_pred EEEEecchhhhhhhccCCCccceeeeeEecc-CccceEEEEEeecHHHH--HHhhccCCCcEEEEECCCCCCcc----Cc
Confidence 999987 222222211110000000 0000 11233 4445566566 89999999999999999876521 12
Q ss_pred EEe-cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457 314 VLV-GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS 358 (389)
Q Consensus 314 ~~~-~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~ 358 (389)
++. ......|+.. +||.||.+|+...+|++|.-||.
T Consensus 346 tl~~s~~~~tVRQ~---------sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQT---------SFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eEEeccccceeeee---------eecccCcEEEEEeCCCcEEEEEe
Confidence 222 1123567777 99999999999999999999885
No 153
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.5e-24 Score=167.49 Aligned_cols=268 Identities=18% Similarity=0.259 Sum_probs=202.1
Q ss_pred CCccccCCCCeEEEEecCc----eeeeee---cCcceEEEeecCCCCeEEEEec-CCeEEEEeCCC---ceeeee-----
Q 016457 12 PKSQSCDNVNSIKRFGLKN----SIQTNF---GDDYVFEIVPKNDWSLMAVSLS-TNVVKLYSPVT---GQYSGE----- 75 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~~----~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~---~~~~~~----- 75 (389)
-..||++.|++|++|+++. .-+.++ .-+..+.+.|.||-+.+++... ..++++|.+.. |.....
T Consensus 99 K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D 178 (420)
T KOG2096|consen 99 KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHID 178 (420)
T ss_pred ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCccccccc
Confidence 3578999999999999863 112222 2446789999999977666655 55899997643 221111
Q ss_pred ----ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEE
Q 016457 76 ----CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFW 151 (389)
Q Consensus 76 ----~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 151 (389)
-+.|.-.|..+-...++ .+|++++.|..|.+|+++ |+.+..+......-+..+.+|+|..+++++.-..|++|
T Consensus 179 ~~~f~~kh~v~~i~iGiA~~~--k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVw 255 (420)
T KOG2096|consen 179 NLEFERKHQVDIINIGIAGNA--KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVW 255 (420)
T ss_pred ccccchhcccceEEEeecCCc--eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEE
Confidence 12366667777776666 799999999999999998 99999998887888889999999999999999999999
Q ss_pred ECcC---C-----ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC---CCcccee----eeccCCc
Q 016457 152 DWRN---K-----KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN---DDDLLES----VINVGTS 216 (389)
Q Consensus 152 d~~~---~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~----~~~~~~~ 216 (389)
.+-- | ..+.++. +|...|..++|+++.. .+++.+.||++++||+.-.-. ....+.. +....+.
T Consensus 256 E~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~ 333 (420)
T KOG2096|consen 256 EPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE 333 (420)
T ss_pred EEEeccCcchhhhhhhheec-cchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence 8642 2 2356677 9999999999999996 999999999999999873211 1111111 1122344
Q ss_pred eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEE
Q 016457 217 VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVG 296 (389)
Q Consensus 217 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~ 296 (389)
...++++ |+++.|+++ ....|++|..++++....+... |...|.+++|+++|+ |++++ .|..++
T Consensus 334 p~RL~ls-P~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~-----------h~~~Is~is~~~~g~--~~atc-Gdr~vr 397 (420)
T KOG2096|consen 334 PVRLELS-PSGDSLAVS-FGSDLKVFASEDGKDYPELEDI-----------HSTTISSISYSSDGK--YIATC-GDRYVR 397 (420)
T ss_pred ceEEEeC-CCCcEEEee-cCCceEEEEcccCccchhHHHh-----------hcCceeeEEecCCCc--EEeee-cceeee
Confidence 4588999 777766554 5568999999998877777654 889999999999999 88888 467788
Q ss_pred EEEe
Q 016457 297 YFPV 300 (389)
Q Consensus 297 i~~~ 300 (389)
++.-
T Consensus 398 v~~n 401 (420)
T KOG2096|consen 398 VIRN 401 (420)
T ss_pred eecC
Confidence 8753
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=1e-24 Score=181.20 Aligned_cols=247 Identities=16% Similarity=0.187 Sum_probs=203.0
Q ss_pred ccccCCCCeEEEEecCce---eeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457 14 SQSCDNVNSIKRFGLKNS---IQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF 88 (389)
Q Consensus 14 ~~s~~~~~~i~~w~~~~~---~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~ 88 (389)
.|+.+.|..|++|..... +..... .+.-.|++......++++|+..+.|+|||++...+.+.+++|+..|+++.+
T Consensus 50 vas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~Y 129 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDY 129 (673)
T ss_pred EeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEe
Confidence 466778888999986543 222222 445566666666689999999999999999977777888999999999999
Q ss_pred eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeeeeecc
Q 016457 89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACLEESH 166 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~ 166 (389)
+... .+||+++..|.|.|..+.++.....|... ...|.-+.|+|....+++.. .+|.|.+||+....++..+...|
T Consensus 130 N~~D--eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H 207 (673)
T KOG4378|consen 130 NNTD--EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH 207 (673)
T ss_pred cCCc--ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc
Confidence 9887 79999999999999999999888888766 45566899999888777654 58999999999888888887789
Q ss_pred cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457 167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD 246 (389)
Q Consensus 167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 246 (389)
..+...|+|+|..+.+|++.+.|..|.+||.+... .........+...++|. ++|.+|++|...|.|..||++.
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-----s~~~l~y~~Plstvaf~-~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-----STDRLTYSHPLSTVAFS-ECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeeccccc-----ccceeeecCCcceeeec-CCceEEEeecCCceEEEEeccc
Confidence 99999999999988899999999999999999532 23333456789999999 8999999999999999999986
Q ss_pred C-ceeEEeecccccccCCccCCCCCceeeecccCC
Q 016457 247 G-QNVASFENARSLASDSWTLDDVDYFVDCHYPGE 280 (389)
Q Consensus 247 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 280 (389)
. .++..+.. |...|++++|-+.
T Consensus 282 ~k~Pv~v~sa------------h~~sVt~vafq~s 304 (673)
T KOG4378|consen 282 TKAPVAVRSA------------HDASVTRVAFQPS 304 (673)
T ss_pred CCCCceEeee------------cccceeEEEeeec
Confidence 5 45556655 6678999998775
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.6e-24 Score=167.15 Aligned_cols=248 Identities=17% Similarity=0.180 Sum_probs=190.3
Q ss_pred EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee
Q 016457 83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL 162 (389)
Q Consensus 83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 162 (389)
..|+.|++.| .+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++|..|++++.|..|.+||+..+.+++++
T Consensus 26 a~~~~Fs~~G--~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWG--DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCc--ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 7899999999 79999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc------CCceeeEEEecCCCcEEEEEecC
Q 016457 163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV------GTSVGKVGFFGETNKHLWCLTHI 236 (389)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~~~~~d 236 (389)
. ..++|....|+|...+.+++.-.+..-.+.++... ....... .....+..|. +.|+++++|...
T Consensus 104 r--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~------~h~~Lp~d~d~dln~sas~~~fd-r~g~yIitGtsK 174 (405)
T KOG1273|consen 104 R--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP------KHSVLPKDDDGDLNSSASHGVFD-RRGKYIITGTSK 174 (405)
T ss_pred E--ccCccceeeeccccCCeEEEEEecCCcEEEEecCC------ceeeccCCCcccccccccccccc-CCCCEEEEecCc
Confidence 7 78999999999998777777766666666666522 2221111 1112223455 789999999999
Q ss_pred CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe
Q 016457 237 ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV 316 (389)
Q Consensus 237 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~ 316 (389)
|.+.++|..+.+++..+... ....|..+.++..|+ +++.-+.|..|+.|++..-.....+ ....
T Consensus 175 Gkllv~~a~t~e~vas~rit-----------s~~~IK~I~~s~~g~--~liiNtsDRvIR~ye~~di~~~~r~---~e~e 238 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRIT-----------SVQAIKQIIVSRKGR--FLIINTSDRVIRTYEISDIDDEGRD---GEVE 238 (405)
T ss_pred ceEEEEecchheeeeeeeec-----------hheeeeEEEEeccCc--EEEEecCCceEEEEehhhhcccCcc---CCcC
Confidence 99999999999999888752 126788999999999 8899999999999998732110000 0111
Q ss_pred cccc--eeeeeccCCCcccCCCCCCCceeEEEec-CCCeEEEEeccCC
Q 016457 317 GGHT--AVVRSVLPMPSVQGRPAQSHGIFGWTGG-EDGRLCCWLSDDS 361 (389)
Q Consensus 317 ~~h~--~~v~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iW~~~~~ 361 (389)
..|. ..|+.+ .-+ .++||.+|.|++.|+ .-..++||.-..+
T Consensus 239 ~~~K~qDvVNk~--~Wk--~ccfs~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 239 PEHKLQDVVNKL--QWK--KCCFSGDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred hhHHHHHHHhhh--hhh--heeecCCccEEEeccccceeEEEEecCCc
Confidence 1121 222222 111 238999999988876 4457999998766
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=5.7e-24 Score=165.14 Aligned_cols=278 Identities=16% Similarity=0.164 Sum_probs=206.0
Q ss_pred CCCCeEEEEecCc-----eeeeeec-CcceEEEeecCCC-CeEEEEecC-------CeEEEEeCCCc---------eeee
Q 016457 18 DNVNSIKRFGLKN-----SIQTNFG-DDYVFEIVPKNDW-SLMAVSLST-------NVVKLYSPVTG---------QYSG 74 (389)
Q Consensus 18 ~~~~~i~~w~~~~-----~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d-------~~i~iw~~~~~---------~~~~ 74 (389)
-.++.|.+.++.. ..+.+.+ .+.|..++-+|-. ++|+++..+ ..+.||.+... +++.
T Consensus 37 K~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 37 KEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred CCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 3456676666642 2234455 8899999999955 566666542 25789987642 2233
Q ss_pred eec-CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE-EEEEEc-----CCCCeEEEEEeC-CCCeEEEeecCC
Q 016457 75 ECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE-VWSVTA-----GSQEIFCFSFGG-STDYLLAAGCGS 146 (389)
Q Consensus 75 ~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~d~ 146 (389)
.+. .+-+.|.|+.|.|++ ..+++-. |..|.+|++..+.. +..+.. +....++-+|+| .+...+++..|+
T Consensus 117 ~Ldteavg~i~cvew~Pns--~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~ 193 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNS--DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDS 193 (370)
T ss_pred cCCHHHhCceeeEEEcCCC--CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCC
Confidence 343 355689999999988 6777765 78899999987655 333332 356788889999 566777778889
Q ss_pred eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC
Q 016457 147 QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET 226 (389)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 226 (389)
++..||+|+.+....+..+|...|..+.|+|+.+.+|++++.||.|++||.|. ...++..+.+|...|.++.|+|..
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~---tk~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK---TKFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC---CCccccccCCCceEEEEEEecCcc
Confidence 99999999999999998899999999999999988999999999999999994 457788889999999999999888
Q ss_pred CcEEEEEecCCcEEEEEcCCCceeEEee---------c------ccccccCC--ccCCCCCceeeecccCCCCeEEEEEe
Q 016457 227 NKHLWCLTHIETLSIWDWKDGQNVASFE---------N------ARSLASDS--WTLDDVDYFVDCHYPGEGENLWVIGG 289 (389)
Q Consensus 227 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~------~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~~g 289 (389)
.+++++++.|..|.+|....-.....+. + ++.+..+. ---+|++.|.+++|+.-..- .+++-
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW-iFASL 349 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW-IFASL 349 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe-eEEEe
Confidence 8999999999999999865322111111 0 00000000 01238899999999987762 35778
Q ss_pred cCCceEEEEEecc
Q 016457 290 TGAGTVGYFPVNY 302 (389)
Q Consensus 290 ~~dg~i~i~~~~~ 302 (389)
+.||.+.|=.+..
T Consensus 350 SYDGRviIs~V~r 362 (370)
T KOG1007|consen 350 SYDGRVIISSVPR 362 (370)
T ss_pred ccCceEEeecCCh
Confidence 9999998876653
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=4e-24 Score=182.90 Aligned_cols=143 Identities=18% Similarity=0.192 Sum_probs=114.8
Q ss_pred CCccccCCCCeEEEEecC-ceeee-------eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCc
Q 016457 12 PKSQSCDNVNSIKRFGLK-NSIQT-------NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSST 82 (389)
Q Consensus 12 ~~~~s~~~~~~i~~w~~~-~~~~~-------~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 82 (389)
...|+|+.|..|++|.+. ..-+. +-+ +-.|-++.|+|...-|...+..|+++|||+.+++.+..+.+|.+.
T Consensus 93 ~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~ 172 (1012)
T KOG1445|consen 93 ELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTDK 172 (1012)
T ss_pred hhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCchh
Confidence 357899999999999986 22222 222 667889999997655555566899999999999999999999999
Q ss_pred EEEEEEeCCCCCCEEEEEecCCeEEEEEcc-CCeEEEEEEcCCCC-eEEEEEeCCCCeEEEeecC----CeEEEEECcCC
Q 016457 83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTR-SFHEVWSVTAGSQE-IFCFSFGGSTDYLLAAGCG----SQIQFWDWRNK 156 (389)
Q Consensus 83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~ 156 (389)
|.+..|+.|| .+|++++.|+.|+|||.+ .+++++..++|.+. =..+.|.-+-.+|++.|.+ ..|++||.+..
T Consensus 173 vQSa~WseDG--~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f 250 (1012)
T KOG1445|consen 173 VQSADWSEDG--KLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKF 250 (1012)
T ss_pred hhccccccCC--ceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeecccc
Confidence 9999999999 799999999999999998 46788888888432 2346676455588888874 68999998753
No 158
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.93 E-value=4.9e-24 Score=183.43 Aligned_cols=280 Identities=16% Similarity=0.214 Sum_probs=216.5
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
...|+.++|-|||..|+.+. +..+.+||.+.|..+.++++|.+.|.+++|+.+| +.++||+.|+.|.+|+..-.-.+
T Consensus 12 ~hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dG--krFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG--KRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred ccchheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCC--ceeccCCCceeEEEeccccccee
Confidence 34789999999998888776 5679999999999999999999999999999999 79999999999999986432222
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (389)
. ..|.+.|.|+.|+|-...+++++- ...-+|........ ..+ ....+.+.+|..+|. +++.|-.+|+|.+-+.
T Consensus 89 -k-YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~-K~k--ss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 89 -K-YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVS-KHK--SSSRIICCSWTNDGQ-YLALGMFNGTISIRNK 161 (1081)
T ss_pred -e-eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHH-hhh--hheeEEEeeecCCCc-EEEEeccCceEEeecC
Confidence 2 247899999999998888877766 56678876544332 222 356788999999996 9999999999998865
Q ss_pred CCCCCCCccceeeeccCCceeeEEEecCCC----cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457 198 GGDINDDDLLESVINVGTSVGKVGFFGETN----KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV 273 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (389)
... +...+...-+.+++|.+++|+|..+ +.+++.....++.+|.+. |+.+..-.. -.-...
T Consensus 162 ~gE--ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~------------L~FdP~ 226 (1081)
T KOG1538|consen 162 NGE--EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA------------LNFDPC 226 (1081)
T ss_pred CCC--cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc------------CCCCch
Confidence 522 2233333445778999999996543 467788888888888765 444432111 113356
Q ss_pred eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeE
Q 016457 274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRL 353 (389)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v 353 (389)
++.+.++|. |++.|+.|+.+.+|--+.-. +.++- .....|+++ +..|++++++.|..||+|
T Consensus 227 CisYf~NGE--y~LiGGsdk~L~~fTR~Gvr-------LGTvg-~~D~WIWtV---------~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 227 CISYFTNGE--YILLGGSDKQLSLFTRDGVR-------LGTVG-EQDSWIWTV---------QAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred hheeccCCc--EEEEccCCCceEEEeecCeE-------Eeecc-ccceeEEEE---------EEccCCceEEEEEccCee
Confidence 788999999 99999999999999765433 24443 456789999 899999999999999999
Q ss_pred EEEeccCC
Q 016457 354 CCWLSDDS 361 (389)
Q Consensus 354 ~iW~~~~~ 361 (389)
-.|++-.+
T Consensus 288 ACyNl~fS 295 (1081)
T KOG1538|consen 288 ACYNLIFS 295 (1081)
T ss_pred ehhhhHHh
Confidence 99998755
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.5e-25 Score=202.24 Aligned_cols=286 Identities=10% Similarity=0.151 Sum_probs=217.3
Q ss_pred EEeecCCCC-eEEEEec----------CCeEEEEeCCC--c----eeeeeecCCCCcEEEEEEeCCCCCC--EEEEEecC
Q 016457 43 EIVPKNDWS-LMAVSLS----------TNVVKLYSPVT--G----QYSGECKGHSSTVNQISFSGPSTPH--VLHSCSSD 103 (389)
Q Consensus 43 ~~~~~~~~~-~l~~~~~----------d~~i~iw~~~~--~----~~~~~~~~~~~~v~~i~~~~~~~~~--~l~s~~~d 103 (389)
.++|+|++. ++|+|.. +.++.||.+.. . +.+..+. -....+.++|.+.++.. +|+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 567888885 5555533 34566665432 2 2333333 34678999999887411 59999999
Q ss_pred CeEEEEEccCC------eEEEEEEcCCCCeEEEEEeCCCC-eEEEeecCCeEEEEECcCCceeeee-eecccCCeeEEEE
Q 016457 104 GTIRAWDTRSF------HEVWSVTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWRNKKQVACL-EESHVEDVTQVHF 175 (389)
Q Consensus 104 g~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~ 175 (389)
|.|.+||...- ..+.+...|.+.|..+.|++..+ .|++|+.||.|.|||+.+.+.-.+. .....+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998752 34566778999999999999887 5555666999999999986554444 2135678999999
Q ss_pred ecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC--CceeeEEEecCCCcEEEEEecCC---cEEEEEcCCC-ce
Q 016457 176 VPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG--TSVGKVGFFGETNKHLWCLTHIE---TLSIWDWKDG-QN 249 (389)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~-~~ 249 (389)
+..-..+|++++.+|++.|||++.. +.+..+..+. ..+..++|+|.+...+++++.|. .|.+||++.. ..
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~----~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKK----KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCC----CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence 9887779999999999999999943 3344443333 35778999987777788887765 7999999865 45
Q ss_pred eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCC
Q 016457 250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPM 329 (389)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 329 (389)
++.+.+ |...|.++.|++.+.. +|++++.|+.|.+|+.++++. +..+. .....+..+
T Consensus 246 ~k~~~~------------H~~GilslsWc~~D~~-lllSsgkD~~ii~wN~~tgEv------l~~~p-~~~nW~fdv--- 302 (1049)
T KOG0307|consen 246 LKILEG------------HQRGILSLSWCPQDPR-LLLSSGKDNRIICWNPNTGEV------LGELP-AQGNWCFDV--- 302 (1049)
T ss_pred hhhhcc------------cccceeeeccCCCCch-hhhcccCCCCeeEecCCCceE------eeecC-CCCcceeee---
Confidence 566655 7799999999998855 688999999999999999887 77776 567888999
Q ss_pred CcccCCCCCCCce-eEEEecCCCeEEEEeccCCc
Q 016457 330 PSVQGRPAQSHGI-FGWTGGEDGRLCCWLSDDSS 362 (389)
Q Consensus 330 ~~~~~~~~s~~~~-~l~s~~~dg~v~iW~~~~~~ 362 (389)
.|.|... .++.++.||.|.|+.+....
T Consensus 303 ------~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 303 ------QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ------eecCCCcchhhhheeccceeeeeeecCC
Confidence 6666655 56888999999999998763
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=160.61 Aligned_cols=277 Identities=16% Similarity=0.163 Sum_probs=203.2
Q ss_pred cceEEEeecCCCCeEEEEecCCeEEEEeCCCce------------eeeeec-CCCCcEEEEEEe-------CCCCCCEEE
Q 016457 39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ------------YSGECK-GHSSTVNQISFS-------GPSTPHVLH 98 (389)
Q Consensus 39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~------------~~~~~~-~~~~~v~~i~~~-------~~~~~~~l~ 98 (389)
.-...+.|+|||..|++-+.|..+.+|++...- ....++ .....|...+|- |+. .+++
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t--~l~a 127 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST--NLFA 127 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc--ceee
Confidence 345578899999999999999999999975210 011111 134568888886 344 6899
Q ss_pred EEecCCeEEEEEccCCeEEEEEEcC--C---CCeEEEEEeCCCCeEEEeecCCeEEEEEC-cCCcee---eeee---ecc
Q 016457 99 SCSSDGTIRAWDTRSFHEVWSVTAG--S---QEIFCFSFGGSTDYLLAAGCGSQIQFWDW-RNKKQV---ACLE---ESH 166 (389)
Q Consensus 99 s~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~---~~~~---~~~ 166 (389)
+.+.+.-|.+||.-+|+...++... . ....+++|+|++.+|+++-. ..|++||+ |.+... .++. .+.
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccc
Confidence 9999999999999999998887753 2 34568999999998887654 89999999 555321 2221 134
Q ss_pred cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec-CCcEEEEEcC
Q 016457 167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH-IETLSIWDWK 245 (389)
Q Consensus 167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~ 245 (389)
.+-+.|++|+|.....++.|+....+-||.-.. ..++..+.+|++.|+.+.|. ++|+.|++|+. |-.|-.||++
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~----~~pl~llggh~gGvThL~~~-edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG----RRPLQLLGGHGGGVTHLQWC-EDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCC----CCceeeecccCCCeeeEEec-cCcCeecccccCCCeEEEEeeh
Confidence 677999999999877899999998888887763 35677777999999999999 77888888876 5689999998
Q ss_pred CC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeee
Q 016457 246 DG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVR 324 (389)
Q Consensus 246 ~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~ 324 (389)
.- .++..+..+.. ....-.-....|+++ +|++|+.||.|++||+..... ++..+ ..|+..|+
T Consensus 282 ~~~~pv~~L~rhv~---------~TNQRI~FDld~~~~--~LasG~tdG~V~vwdlk~~gn-----~~sv~-~~~sd~vN 344 (406)
T KOG2919|consen 282 YSRDPVYALERHVG---------DTNQRILFDLDPKGE--ILASGDTDGSVRVWDLKDLGN-----EVSVT-GNYSDTVN 344 (406)
T ss_pred hccchhhhhhhhcc---------CccceEEEecCCCCc--eeeccCCCccEEEEecCCCCC-----ccccc-cccccccc
Confidence 64 34444544321 112223345567777 999999999999999987321 13334 37888899
Q ss_pred eccCCCcccCCCCCCCceeEEEecC
Q 016457 325 SVLPMPSVQGRPAQSHGIFGWTGGE 349 (389)
Q Consensus 325 ~~~~~~~~~~~~~s~~~~~l~s~~~ 349 (389)
.+ +++|-=.++++++.
T Consensus 345 gv---------slnP~mpilatssG 360 (406)
T KOG2919|consen 345 GV---------SLNPIMPILATSSG 360 (406)
T ss_pred ce---------ecCcccceeeeccC
Confidence 99 77777666777763
No 161
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.9e-23 Score=165.80 Aligned_cols=301 Identities=12% Similarity=0.127 Sum_probs=220.7
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCC------ceeeeeec-CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT------GQYSGECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 110 (389)
.+.|+++.|+.++++|++|+.|..+++|+++. .+++.... .|...|.|++|...+ ..+++|+.+++|...|
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N--~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN--RFLYSGERWGTVIKHD 133 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC--eeEecCCCcceeEeee
Confidence 78999999999999999999999999999853 24444443 366899999998776 7999999999999999
Q ss_pred ccCCeEEEEEEcC--CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeeeee-ecccCCeeEEEEecCCCCeEEEE
Q 016457 111 TRSFHEVWSVTAG--SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVACLE-ESHVEDVTQVHFVPNNQNKVVSA 186 (389)
Q Consensus 111 ~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~ 186 (389)
+.+.+.+..+... .+.|..+..+|.++.+++.+.++.|.+||.+... +..-+. .........+.|+|..+.+|++.
T Consensus 134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~ 213 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVN 213 (609)
T ss_pred cccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence 9999888777643 4689999999999999999999999999998765 222221 13456788999999998899999
Q ss_pred eCCCcEEEEecCCCCCCCccceeeecc---CCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC
Q 016457 187 SVDGLICTFDTGGDINDDDLLESVINV---GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS 263 (389)
Q Consensus 187 ~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 263 (389)
+..+-+.+||.+......-......+. ...-.++.|+ ++|..|++.-....-.+||+...++...-..+....
T Consensus 214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~-~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G--- 289 (609)
T KOG4227|consen 214 SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS-PSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG--- 289 (609)
T ss_pred cccCCCCceeeccccchHHhhhccccCcccchhhhheeeC-CCCCeehhhhccCCCEEeeeecccceeEeccCCCCc---
Confidence 999999999999432111011111111 2234678898 667777776666666688887655432222211100
Q ss_pred ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc----cccC-------------CCeEEEecccceeeeec
Q 016457 264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA----ATIG-------------PPEAVLVGGHTAVVRSV 326 (389)
Q Consensus 264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~----~~~~-------------~~~~~~~~~h~~~v~~~ 326 (389)
+-....+.+++|..+- -+++|+.+-.|++|.+..... ..+| ..+..+. ||...++.|
T Consensus 290 --Y~N~~T~KS~~F~~D~---~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr-GHRSv~NQV 363 (609)
T KOG4227|consen 290 --YCNIKTIKSMTFIDDY---TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR-GHRSVPNQV 363 (609)
T ss_pred --ceeeeeeeeeeeecce---eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe-cccccccce
Confidence 0023456778887764 378999999999998753221 1122 2334454 899999999
Q ss_pred cCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457 327 LPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 327 ~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~ 359 (389)
.|+|...+|++.|-...+++|.--
T Consensus 364 ---------RF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 364 ---------RFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ---------eecCCcceEeccchhhheeccccc
Confidence 999999999999999999999654
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=4.5e-23 Score=162.96 Aligned_cols=269 Identities=16% Similarity=0.234 Sum_probs=199.6
Q ss_pred cCCCCeEEEEecCc-----eeeeeec---CcceEEEeecCCC----CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEE
Q 016457 17 CDNVNSIKRFGLKN-----SIQTNFG---DDYVFEIVPKNDW----SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVN 84 (389)
Q Consensus 17 ~~~~~~i~~w~~~~-----~~~~~~~---~~~v~~~~~~~~~----~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~ 84 (389)
....+.+.+|+... .++.... .+..+.++|+.|- .++|+|+.-|.|+|.|+.+++....+.+|...|+
T Consensus 60 tvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sIN 139 (385)
T KOG1034|consen 60 TVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSIN 139 (385)
T ss_pred EeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccch
Confidence 34445677776532 2222222 5667788887643 4899999999999999999999999999999999
Q ss_pred EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE---cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeee
Q 016457 85 QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT---AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVAC 161 (389)
Q Consensus 85 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 161 (389)
.|.|+|... +++++++.|.+|++|++++..++..|- +|...|.++.|++++.+++++|.|.+|++|++...+....
T Consensus 140 eik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~ 218 (385)
T KOG1034|consen 140 EIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK 218 (385)
T ss_pred hhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence 999999875 899999999999999999999998874 6899999999999999999999999999999974321100
Q ss_pred ---------------------------eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC----------C
Q 016457 162 ---------------------------LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND----------D 204 (389)
Q Consensus 162 ---------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----------~ 204 (389)
-..-|...|-|+.|-- +++++-+-++.|..|..-.-.+. .
T Consensus 219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~ 295 (385)
T KOG1034|consen 219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESAT 295 (385)
T ss_pred hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccce
Confidence 0124666677777764 38899888999999987311100 1
Q ss_pred ccceeeeccCCceeeEEEe-cCCCcEEEEEecCCcEEEEEcCCCcee--EEeecccccccCCccCCCCCceeeecccCCC
Q 016457 205 DLLESVINVGTSVGKVGFF-GETNKHLWCLTHIETLSIWDWKDGQNV--ASFENARSLASDSWTLDDVDYFVDCHYPGEG 281 (389)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 281 (389)
..+..+.-....|.-+.|. .+-++.|+.|...|.+.+||++...+. .++.... ....|...+|+.|+
T Consensus 296 Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~----------~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 296 TILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK----------SGSTVRQTSFSRDG 365 (385)
T ss_pred eeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc----------ccceeeeeeecccC
Confidence 1122222233345555443 144678999999999999999877653 1222221 33778999999999
Q ss_pred CeEEEEEecCCceEEEEEec
Q 016457 282 ENLWVIGGTGAGTVGYFPVN 301 (389)
Q Consensus 282 ~~~~l~~g~~dg~i~i~~~~ 301 (389)
. +|+....|++|.-||..
T Consensus 366 s--~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 366 S--ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred c--EEEEEeCCCcEEEEEee
Confidence 9 88888899999999864
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=9.3e-23 Score=165.51 Aligned_cols=273 Identities=13% Similarity=0.138 Sum_probs=204.7
Q ss_pred CccccCCCCeEEEEecCc-----------eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCC--------C---
Q 016457 13 KSQSCDNVNSIKRFGLKN-----------SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV--------T--- 69 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~-----------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~--------~--- 69 (389)
..||++.|..|++|.+.. ....+.. ..+|+++.|+|+|.+||+|+++|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 689999999999998741 1222333 8899999999999999999999999999765 2
Q ss_pred -----ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec
Q 016457 70 -----GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC 144 (389)
Q Consensus 70 -----~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 144 (389)
....+.+.+|.+.|..++|+|++ .++++++.|+++++||+..|+....+..|...+..++|.|.+.++++-+.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~--~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDS--NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCC--ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhcc
Confidence 12345678899999999999999 79999999999999999999999999999999999999999999999888
Q ss_pred CCeEEEEECcCCceeeeee------------------eccc----CCeeEEEEecCCCCeEEEEeC----CC-----cEE
Q 016457 145 GSQIQFWDWRNKKQVACLE------------------ESHV----EDVTQVHFVPNNQNKVVSASV----DG-----LIC 193 (389)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~------------------~~~~----~~v~~~~~~~~~~~~l~~~~~----d~-----~i~ 193 (389)
|...+.+.+...+.+.... ..|. .....++|+|+|. ++++... .+ ..+
T Consensus 186 dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~-llvtPag~~~~g~~~~~n~tY 264 (434)
T KOG1009|consen 186 DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS-LLVTPAGLFKVGGGVFRNTSY 264 (434)
T ss_pred CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc-EEEcccceeeeCCceeeceeE
Confidence 8877777665433222111 0111 2345688999996 8877642 22 234
Q ss_pred EEecCCCCCCCccceeeeccCCceeeEEEec-----------------CCCcEEEEEecCCcEEEEEcCCCceeEEeecc
Q 016457 194 TFDTGGDINDDDLLESVINVGTSVGKVGFFG-----------------ETNKHLWCLTHIETLSIWDWKDGQNVASFENA 256 (389)
Q Consensus 194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 256 (389)
+|+-. ....+...+.....+...+.++| |.. ++++....+.+++||.++..++......
T Consensus 265 vfsrk---~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr-lvfaiAt~~svyvydtq~~~P~~~v~ni 340 (434)
T KOG1009|consen 265 VFSRK---DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR-LVFAIATKNSVYVYDTQTLEPLAVVDNI 340 (434)
T ss_pred eeccc---cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc-eEEEEeecceEEEeccccccceEEEeee
Confidence 44433 23344444444445555554442 222 3444445568999999988888776654
Q ss_pred cccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 257 RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
|-..+++++|+++|. +++..+.||...+..++..++
T Consensus 341 -----------hy~~iTDiaws~dg~--~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 341 -----------HYSAITDIAWSDDGS--VLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred -----------eeeeecceeecCCCc--EEEEeccCCceEEEEEcchhc
Confidence 778999999999999 889999999999988887765
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=7.4e-23 Score=173.89 Aligned_cols=266 Identities=14% Similarity=0.176 Sum_probs=208.0
Q ss_pred CccccCCCCeEEEEecC--ceeeeeecCcceEEEeecCCCC--eEEEEecCCeEEEEeCCCce---------e-------
Q 016457 13 KSQSCDNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWS--LMAVSLSTNVVKLYSPVTGQ---------Y------- 72 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iw~~~~~~---------~------- 72 (389)
-.++++.||+|++|.+. .++++..-.+.|.|++|+|.++ .||++-.. .+.|.+..-|. +
T Consensus 414 wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~ 492 (733)
T KOG0650|consen 414 WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGPTKELLASAPNE 492 (733)
T ss_pred eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhhcchhhhhhcCCCc
Confidence 57899999999999985 5777777788999999999764 55555433 35555432120 0
Q ss_pred ---------------------eeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccCCeEEEEEEcCCCCeE
Q 016457 73 ---------------------SGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRSFHEVWSVTAGSQEIF 128 (389)
Q Consensus 73 ---------------------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~ 128 (389)
+...-.|...|..+.|+..| ++|++...+ ..|.|.++.......-|+...+.|.
T Consensus 493 ~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG--DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq 570 (733)
T KOG0650|consen 493 SEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG--DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQ 570 (733)
T ss_pred cCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC--ceEEEeccCCCcceEEEEecccccccCchhhcCCcee
Confidence 01112377889999999999 799997654 4689999987776666766678999
Q ss_pred EEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccce
Q 016457 129 CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLE 208 (389)
Q Consensus 129 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 208 (389)
++.|+|...+|++++. ..|++||+...+.+..+. .....|..|+.+|.|. -|+.|+.|+.++.||+.- ..++..
T Consensus 571 ~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~-tg~kwiS~msihp~GD-nli~gs~d~k~~WfDldl---sskPyk 644 (733)
T KOG0650|consen 571 RVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL-TGSKWISSMSIHPNGD-NLILGSYDKKMCWFDLDL---SSKPYK 644 (733)
T ss_pred EEEecCCCceEEEEec-cceEEEehhHHHHHHHHh-cCCeeeeeeeecCCCC-eEEEecCCCeeEEEEccc---CcchhH
Confidence 9999999999998887 899999999988888887 5677899999999996 888899999999999983 335677
Q ss_pred eeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC------C---ceeEEeecccccccCCccCCCCCceeeecccC
Q 016457 209 SVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD------G---QNVASFENARSLASDSWTLDDVDYFVDCHYPG 279 (389)
Q Consensus 209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (389)
.+..|...+++++|+ ..-.++++++.||++.||.-.- . -+++.+.++... ....|.++.|+|
T Consensus 645 ~lr~H~~avr~Va~H-~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~--------~~~gVLd~~wHP 715 (733)
T KOG0650|consen 645 TLRLHEKAVRSVAFH-KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT--------NDLGVLDTIWHP 715 (733)
T ss_pred Hhhhhhhhhhhhhhc-cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee--------cccceEeecccC
Confidence 778899999999999 6778999999999999886321 1 123445553311 224589999999
Q ss_pred CCCeEEEEEecCCceEEEE
Q 016457 280 EGENLWVIGGTGAGTVGYF 298 (389)
Q Consensus 280 ~~~~~~l~~g~~dg~i~i~ 298 (389)
... ||++++.||+|++|
T Consensus 716 ~qp--WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 716 RQP--WLFSAGADGTIRLF 732 (733)
T ss_pred CCc--eEEecCCCceEEee
Confidence 888 99999999999998
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=2.1e-22 Score=163.48 Aligned_cols=291 Identities=15% Similarity=0.172 Sum_probs=209.4
Q ss_pred CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCce---------eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457 38 DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQ---------YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIR 107 (389)
Q Consensus 38 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~---------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~ 107 (389)
..+|..+.|.+... .||+|+.|..|+||-++.++ .+..+..|...|+++.|+|++ ++|+||+.+|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g--elLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG--ELLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc--CeeeecCCCceEE
Confidence 67899999998775 99999999999999876432 344567899999999999999 7999999999999
Q ss_pred EEEcc--------C--------CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCee
Q 016457 108 AWDTR--------S--------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVT 171 (389)
Q Consensus 108 iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 171 (389)
+|... + ......+.+|...|..++|+|++..+++++.|..+++||+..+.....+. .|...+.
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvq 169 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQ 169 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-ccccccc
Confidence 99765 2 12345677889999999999999999999999999999999999999998 8999999
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC----------------ccceeee---ccCCceeeEEEecCCCcEEEE
Q 016457 172 QVHFVPNNQNKVVSASVDGLICTFDTGGDINDD----------------DLLESVI---NVGTSVGKVGFFGETNKHLWC 232 (389)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----------------~~~~~~~---~~~~~i~~~~~~~~~~~~l~~ 232 (389)
.++|.|.++ ++++-+.|...+.+++....... ....++. ....-...++|+ |+|.+|++
T Consensus 170 gvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT-PdG~llvt 247 (434)
T KOG1009|consen 170 GVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT-PDGSLLVT 247 (434)
T ss_pred eeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC-CCCcEEEc
Confidence 999999996 99999989877777766321000 0000110 011234567788 77777776
Q ss_pred Eec----CC-----cEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCC----------------CCeEEE
Q 016457 233 LTH----IE-----TLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGE----------------GENLWV 286 (389)
Q Consensus 233 ~~~----d~-----~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------~~~~~l 286 (389)
.+. .+ ..++|+-... ++...+.... .+...+.|+|- .-++.+
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~------------k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK------------KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCCCC------------cceEEEEeeeeEEEeccccccccccccccceEE
Confidence 543 11 2334432211 1222222211 22222332220 012233
Q ss_pred EEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 287 IGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 287 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
+.+ ....|+|||.++... +.....-|-..|+++ +|++||.+|+..|.||...+-.++..
T Consensus 316 aiA-t~~svyvydtq~~~P------~~~v~nihy~~iTDi---------aws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 316 AIA-TKNSVYVYDTQTLEP------LAVVDNIHYSAITDI---------AWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EEe-ecceEEEeccccccc------eEEEeeeeeeeecce---------eecCCCcEEEEeccCCceEEEEEcch
Confidence 444 345699999987554 666666788999999 99999999999999999888777665
No 166
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=1.6e-22 Score=166.53 Aligned_cols=269 Identities=11% Similarity=0.104 Sum_probs=198.7
Q ss_pred CCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC----eEEEEEEcCCCCeEEEEEeCCC-CeEEE
Q 016457 67 PVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF----HEVWSVTAGSQEIFCFSFGGST-DYLLA 141 (389)
Q Consensus 67 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 141 (389)
+.+-.....++.+...|++++|+|....+++++|..-|.|-+||+.+. .-+..+..|..+|.++.|+|.+ ..+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 333344455667889999999999875468999999999999999532 3356677889999999999965 56788
Q ss_pred eecCCeEEEEECcCCc--eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceee
Q 016457 142 AGCGSQIQFWDWRNKK--QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGK 219 (389)
Q Consensus 142 ~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 219 (389)
++.||+|++-|++... .+..+. .....+..+.|+.+.+ .++.+..=|.+.+||++++.. ....+.-|...|.+
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s---~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLD-TDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGS---EYENLRLHKKKITS 327 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcC-ccceeeeeccccCCCc-cEEEeecccceEEEEeecCCc---cchhhhhhhcccce
Confidence 8889999999998764 344443 2455678889998887 666666666999999997653 23444457779999
Q ss_pred EEEecCCCcEEEEEecCCcEEEEEcCCCceeEE--eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEE
Q 016457 220 VGFFGETNKHLWCLTHIETLSIWDWKDGQNVAS--FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGY 297 (389)
Q Consensus 220 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i 297 (389)
++++|-...+|++++.|++.+|||++....... +... .|...|.+..|||.+. -|++.+.|..|+|
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~----------~HrrsV~sAyFSPs~g--tl~TT~~D~~IRv 395 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL----------PHRRSVNSAYFSPSGG--TLLTTCQDNEIRV 395 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcceecc----------cccceeeeeEEcCCCC--ceEeeccCCceEE
Confidence 999988888999999999999999986433322 2221 2889999999999998 4788889999999
Q ss_pred EEeccCCccccCCCeEEEecccc--eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 298 FPVNYGGAATIGPPEAVLVGGHT--AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
||..-- .....++..+...+. ..++- +-++|.|+..++++|-.-..|-|++-...
T Consensus 396 ~dss~~--sa~~~p~~~I~Hn~~t~RwlT~-------fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 396 FDSSCI--SAKDEPLGTIPHNNRTGRWLTP-------FKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eecccc--cccCCccceeeccCcccccccc-------hhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 998511 011223445542221 11222 22379999999999998888999987755
No 167
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.91 E-value=4.4e-22 Score=175.99 Aligned_cols=272 Identities=15% Similarity=0.140 Sum_probs=202.4
Q ss_pred CeEEEEeCCCc-eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE--EE----EEEcCCCCeEEEEE
Q 016457 60 NVVKLYSPVTG-QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE--VW----SVTAGSQEIFCFSF 132 (389)
Q Consensus 60 ~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~~~~ 132 (389)
+.+.||++... .+...+. -...|.+++|+|... .+++.|..+|.|.+||++.+.. .. ....|..+++.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47999999865 4444444 567899999999874 7999999999999999987654 22 22346889999999
Q ss_pred eCCCCe--EEEeecCCeEEEEECcCCce-eeeee----e------cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457 133 GGSTDY--LLAAGCGSQIQFWDWRNKKQ-VACLE----E------SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG 199 (389)
Q Consensus 133 ~~~~~~--l~~~~~d~~i~iwd~~~~~~-~~~~~----~------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (389)
..+... +++++.||.|..|+++.-.. ...+. . .....++++.|.+..++.|+.|+.+|.|..-+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 765444 99999999999999875432 11110 0 12245899999999999999999999988744432
Q ss_pred CCCCC----ccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC-CCceeEEeecccccccCCccCCCCCceee
Q 016457 200 DINDD----DLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK-DGQNVASFENARSLASDSWTLDDVDYFVD 274 (389)
Q Consensus 200 ~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (389)
..... +.......|.++|..+.++|-..+.+++++ |.+++||... ...++..+.. +...+++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~------------~~~~v~~ 446 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS------------SPDYVTD 446 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh------------ccceeee
Confidence 22222 345566678899999999966555666665 9999999987 5566666665 5578999
Q ss_pred ecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEE
Q 016457 275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLC 354 (389)
Q Consensus 275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~ 354 (389)
++|||.... .++++..||.|.+||+..... .|+.... -+....+.+ .|++.|+.|+.|...|.+.
T Consensus 447 vaWSptrpa-vF~~~d~~G~l~iWDLl~~~~----~Pv~s~~-~~~~~l~~~---------~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 447 VAWSPTRPA-VFATVDGDGNLDIWDLLQDDE----EPVLSQK-VCSPALTRV---------RWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred eEEcCcCce-EEEEEcCCCceehhhhhcccc----CCccccc-cccccccee---------ecCCCCcEEEEecCCCcEE
Confidence 999997654 578899999999999987654 2223332 223344444 7888899999999999999
Q ss_pred EEeccCC
Q 016457 355 CWLSDDS 361 (389)
Q Consensus 355 iW~~~~~ 361 (389)
+|++...
T Consensus 512 ~~~l~~~ 518 (555)
T KOG1587|consen 512 ILKLSES 518 (555)
T ss_pred EEEcCch
Confidence 9999866
No 168
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.5e-21 Score=176.19 Aligned_cols=301 Identities=13% Similarity=0.133 Sum_probs=218.5
Q ss_pred ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCC---CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc----
Q 016457 40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGH---SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR---- 112 (389)
Q Consensus 40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~---- 112 (389)
.-..+.|+|-...++++...-.|++||.+.++.+..|..+ ...|+.+.+-...+..++++|+.||.|+||+--
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4567788998889999988889999999999888777543 456999998765544689999999999999743
Q ss_pred -CCeEEEEEEc---C----CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457 113 -SFHEVWSVTA---G----SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 113 -~~~~~~~~~~---~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 184 (389)
..+.+..+.+ + .+.=.-+.|....++|+++|.-..|+|||......+..+..+....++++.-+..+.++++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 2233333221 1 1111346788888999999988999999999888888777455666788776655557999
Q ss_pred EEeCCCcEEEEecCCCCCCCccceeeeccCCc--eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccC
Q 016457 185 SASVDGLICTFDTGGDINDDDLLESVINVGTS--VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASD 262 (389)
Q Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 262 (389)
+|..||.|++||.|... ....+.....|... |..+.+.+..-..|++|+.+|.|++||++.......+....
T Consensus 1226 AGfaDGsvRvyD~R~a~-~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~----- 1299 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAP-PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA----- 1299 (1387)
T ss_pred EeecCCceEEeecccCC-ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee-----
Confidence 99999999999999543 33456666777766 99999984333469999999999999999752222221110
Q ss_pred CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce
Q 016457 263 SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI 342 (389)
Q Consensus 263 ~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~ 342 (389)
.|. ..+..+++..+++.. .+|+|+. +.|+||++...++..+... ..+.....+.+.++ +|+|...
T Consensus 1300 ~~~--yGs~lTal~VH~hap--iiAsGs~-q~ikIy~~~G~~l~~~k~n-~~F~~q~~gs~scL---------~FHP~~~ 1364 (1387)
T KOG1517|consen 1300 HWE--YGSALTALTVHEHAP--IIASGSA-QLIKIYSLSGEQLNIIKYN-PGFMGQRIGSVSCL---------AFHPHRL 1364 (1387)
T ss_pred ccc--cCccceeeeeccCCC--eeeecCc-ceEEEEecChhhhcccccC-cccccCcCCCccee---------eecchhH
Confidence 011 113588999999888 8899988 9999999987765222110 11111112344555 9999999
Q ss_pred eEEEecCCCeEEEEeccCC
Q 016457 343 FGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 343 ~l~s~~~dg~v~iW~~~~~ 361 (389)
.||.|..|.+|.||..+.+
T Consensus 1365 llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hhhhccCCceEEEeecCCc
Confidence 9999999999999998754
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=1.3e-19 Score=163.17 Aligned_cols=302 Identities=25% Similarity=0.365 Sum_probs=232.1
Q ss_pred CCCCeEEEEecCc---eeeeeec-CcceEEEeecCCCCeEEEEec-CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457 18 DNVNSIKRFGLKN---SIQTNFG-DDYVFEIVPKNDWSLMAVSLS-TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS 92 (389)
Q Consensus 18 ~~~~~i~~w~~~~---~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~ 92 (389)
..++.+.+|+... ....+.. ...|.+++|+|++..+++++. ++.+++|++..+..+..+.+|...|.+++|+|++
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence 3388999999864 4445555 788999999999998888885 9999999999888888999999999999999888
Q ss_pred CCC-EEEEEecCCeEEEEEccCCeEEE-EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce-eeeeeecccCC
Q 016457 93 TPH-VLHSCSSDGTIRAWDTRSFHEVW-SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ-VACLEESHVED 169 (389)
Q Consensus 93 ~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~ 169 (389)
. .+++++.|+.|++||...+..+. .+..|.... ...|+|++..+++++.|+.+++||++.... +..+. .|...
T Consensus 211 --~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~ 286 (466)
T COG2319 211 --GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS-GHSSS 286 (466)
T ss_pred --ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe-cCCcc
Confidence 4 55555999999999988788877 688886664 338998887888888899999999987665 44443 78899
Q ss_pred eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee--eccCCceeeEEEecCCCcEEEEE-ecCCcEEEEEcCC
Q 016457 170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV--INVGTSVGKVGFFGETNKHLWCL-THIETLSIWDWKD 246 (389)
Q Consensus 170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~ 246 (389)
+.++.|+|++. .+++++.|+.+.+||..+.. ..... ..|...+..+.+ .+++..++.+ ..|+.+.+|+...
T Consensus 287 v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 287 VLSVAFSPDGK-LLASGSSDGTVRLWDLETGK----LLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred EEEEEECCCCC-EEEEeeCCCcEEEEEcCCCc----eEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCC
Confidence 99999999775 77778889889999888542 22222 356667899999 5553455555 6788999999987
Q ss_pred CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457 247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV 326 (389)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 326 (389)
......... ...+..+.+.+ . ......+..++.+.+|+...... ..... .+...+...
T Consensus 361 ~~~~~~~~~-------------~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~ 418 (466)
T COG2319 361 GKPLKTLEG-------------HSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSL------LRNLD-GHTSRVTSL 418 (466)
T ss_pred CceeEEecC-------------CceEEEEEECC-C-CCEEEEecCCCceEEEecccCee------eeecc-CCCCcEEEE
Confidence 762222221 12277888888 5 33334488999999999998765 22222 221455666
Q ss_pred cCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457 327 LPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD 360 (389)
Q Consensus 327 ~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~ 360 (389)
.+++++.++++++.++.+++|++..
T Consensus 419 ---------~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 419 ---------DFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ---------EECCCCcEEEEecCCCcEEEEeccC
Confidence 7889999999999999999999987
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.1e-22 Score=171.85 Aligned_cols=257 Identities=16% Similarity=0.236 Sum_probs=193.0
Q ss_pred eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC--------CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC
Q 016457 75 ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS--------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS 146 (389)
Q Consensus 75 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 146 (389)
++..|.+.|..++|.|.. ..|++++.||+|.+|++.. -+++.+|.+|.++|.|+++.+++..++++|.||
T Consensus 289 tl~s~~d~ir~l~~~~se--p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSE--PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCC--CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 566799999999999988 6999999999999999932 367899999999999999999999999999999
Q ss_pred eEEEEECcCC----------ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCc
Q 016457 147 QIQFWDWRNK----------KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTS 216 (389)
Q Consensus 147 ~i~iwd~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 216 (389)
+|+.|++... .....+. +|.+.+..+++++... .|++++.||+++.|+...... +..........
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~g~ 441 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESP---CTFGEPKEHGY 441 (577)
T ss_pred eeeeeccCCCCCcccccCcchhcccee-ccccceeeeeeccccc-ceeeecCCceEEeeccCCcCc---cccCCccccCC
Confidence 9999966521 1234455 8999999999999885 899999999999999984321 11222222233
Q ss_pred eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEE
Q 016457 217 VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVG 296 (389)
Q Consensus 217 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~ 296 (389)
..++.+-...-.+.++...-+.-.++++.....+..+........ .....+..+.++|.+. +.+++..|+.|+
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~-----~~~~~in~vVs~~~~~--~~~~~hed~~Ir 514 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP-----RRYPQINKVVSHPTAD--ITFTAHEDRSIR 514 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc-----cccCccceEEecCCCC--eeEecccCCcee
Confidence 455555422223344444444444555555555554442110000 0124567788889887 789999999999
Q ss_pred EEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 297 YFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 297 i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
++|..+++. +.... .|...|+++ ++.|+|.+|++++.||.+++|+++..
T Consensus 515 ~~dn~~~~~------l~s~~-a~~~svtsl---------ai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 515 FFDNKTGKI------LHSMV-AHKDSVTSL---------AIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccccccc------chhee-eccceecce---------eecCCCceEEeecCCceeehhhccch
Confidence 999999886 56555 899999999 99999999999999999999999754
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-20 Score=143.59 Aligned_cols=236 Identities=18% Similarity=0.215 Sum_probs=177.5
Q ss_pred cceEEEeecCCCCeEEEEecCCeEEEEeCCC---------c-eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457 39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT---------G-QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108 (389)
Q Consensus 39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~---------~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i 108 (389)
..|++-+++|.+++|++|..+|.|.++.++. | ..+...++|.++|+.++|. + .+|++|+ ||.|+-
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d---~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-D---DFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-h---hheeecc-CceEEE
Confidence 4567778999999999999999999998753 2 2344558899999999998 3 3777776 599999
Q ss_pred EEccCCeE------EEEEEc-------CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEE
Q 016457 109 WDTRSFHE------VWSVTA-------GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHF 175 (389)
Q Consensus 109 wd~~~~~~------~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 175 (389)
|..+.... +...+. .-..|+++-..|..+.++.++.|+.++-||+++++...+++ +|.+.+.+++-
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeee
Confidence 98764321 111111 13578999999999999999999999999999999999999 99999999998
Q ss_pred ecCCCCeEEEEeCCCcEEEEecCCCCCCC-----ccceeeec-cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457 176 VPNNQNKVVSASVDGLICTFDTGGDINDD-----DLLESVIN-VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN 249 (389)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 249 (389)
-...+ .+++|++||++++||.++.+... +....... ....|.+++.+ ...|++|+ ...+.+|+++..++
T Consensus 165 R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~---edWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 165 RNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN---EDWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred cccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc---CceEEecC-CCceeEEeccCCCc
Confidence 55554 89999999999999999764210 11111111 23456666654 34666654 45789999999988
Q ss_pred eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
...|.- ...+..+.|..+ .+++++....|.-|.+..
T Consensus 240 t~vfpi-------------pa~v~~v~F~~d----~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 240 TCVFPI-------------PARVHLVDFVDD----CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eEEEec-------------ccceeEeeeecc----eEEEeccccceeeeeecc
Confidence 888873 367788888875 567777778888887763
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.90 E-value=1.8e-23 Score=183.96 Aligned_cols=281 Identities=15% Similarity=0.174 Sum_probs=221.9
Q ss_pred eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc
Q 016457 34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR 112 (389)
Q Consensus 34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~ 112 (389)
.+.+ ..+|+|+.|...|.++++|++|..++||..+++.++....||.+.|+.++.+.++ .++++++.|..|++|.+.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n--~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN--TMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh--hhhhhcccCceEEEEecC
Confidence 3445 7789999999999999999999999999999999999999999999999999877 799999999999999999
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee----eecccCCeeEEEEecCCCCeEEEEeC
Q 016457 113 SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL----EESHVEDVTQVHFVPNNQNKVVSASV 188 (389)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~ 188 (389)
++.++..+.+|.+.|++++|+|-. +++.||++++||.+ ..++... ......-+.++.|...+. .+++++.
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~f~Tgs~ 336 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGD-RFLTGSR 336 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccc-ccccccC
Confidence 999999999999999999999865 67779999999988 2221111 112345577788888885 8999999
Q ss_pred CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCC
Q 016457 189 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDD 268 (389)
Q Consensus 189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (389)
|+.-..|.+.... .+...+.-+..+.....+.+++-.+-.+++|++.+|...+.+.+ |
T Consensus 337 d~ea~n~e~~~l~----------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g------------h 394 (1113)
T KOG0644|consen 337 DGEARNHEFEQLA----------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG------------H 394 (1113)
T ss_pred CcccccchhhHhh----------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc------------c
Confidence 9998888776210 11111111222212224666777778899999999998888887 7
Q ss_pred CCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec
Q 016457 269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG 348 (389)
Q Consensus 269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~ 348 (389)
.+++..+.++|-+.+ ...+++.||...|||+-.+.. +.....+|...+.+ .||+||..++...
T Consensus 395 sd~~yvLd~Hpfn~r-i~msag~dgst~iwdi~eg~p------ik~y~~gh~kl~d~----------kFSqdgts~~lsd 457 (1113)
T KOG0644|consen 395 SDEVYVLDVHPFNPR-IAMSAGYDGSTIIWDIWEGIP------IKHYFIGHGKLVDG----------KFSQDGTSIALSD 457 (1113)
T ss_pred ccceeeeeecCCCcH-hhhhccCCCceEeeecccCCc------ceeeecccceeecc----------ccCCCCceEecCC
Confidence 788999999998775 356788999999999987654 45554466544444 6999999988888
Q ss_pred CCCeEEEEeccCC
Q 016457 349 EDGRLCCWLSDDS 361 (389)
Q Consensus 349 ~dg~v~iW~~~~~ 361 (389)
.-|.+.|.....+
T Consensus 458 ~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 458 DHGQLYILGTGQS 470 (1113)
T ss_pred CCCceEEeccCCC
Confidence 8899999888766
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=5.7e-21 Score=148.74 Aligned_cols=297 Identities=13% Similarity=0.110 Sum_probs=208.2
Q ss_pred eeeeeecCcceEEEeecC--C-CCeEEEEec----CCeEEEEeCC--Cceeeeee-cCCCCcEEEEEEeCCCC---CCEE
Q 016457 31 SIQTNFGDDYVFEIVPKN--D-WSLMAVSLS----TNVVKLYSPV--TGQYSGEC-KGHSSTVNQISFSGPST---PHVL 97 (389)
Q Consensus 31 ~~~~~~~~~~v~~~~~~~--~-~~~l~~~~~----d~~i~iw~~~--~~~~~~~~-~~~~~~v~~i~~~~~~~---~~~l 97 (389)
.+..+...-.++++.|+. + ..+||.|+. .+.|.|..+. +++.+..- ..|.-+++.+-|.|+.. +++|
T Consensus 37 eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 37 EIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred eEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 344444466788999983 2 347888875 4567666543 34443322 24888999999999873 3467
Q ss_pred EEEecCCeEEEEEccCC--eE--EEEEE-----cCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCce---eeeeee
Q 016457 98 HSCSSDGTIRAWDTRSF--HE--VWSVT-----AGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQ---VACLEE 164 (389)
Q Consensus 98 ~s~~~dg~i~iwd~~~~--~~--~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~---~~~~~~ 164 (389)
||.+ ..+|+|.+... +. ...+. .+..++++..|+.-+..++.+++ |-+..|||++++.. ..++-
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI- 193 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI- 193 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE-
Confidence 7654 36999998732 11 11121 23689999999987766665555 99999999998733 45555
Q ss_pred cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC-cEEEEE
Q 016457 165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE-TLSIWD 243 (389)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d 243 (389)
+|.+.|..++|...+...|++.+.||.+++||+|... ....+.+-.....+...++|++.+.+++++-..|+ .|.|.|
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccc-cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 8999999999999887899999999999999999532 22233333333568889999988888998887765 899999
Q ss_pred cCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccccee
Q 016457 244 WKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAV 322 (389)
Q Consensus 244 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~ 322 (389)
++.. .++..+.+ |...|..++|.|.... .|++++.|..+.+||+...-......|+.... -+++
T Consensus 273 iR~P~tpva~L~~------------H~a~VNgIaWaPhS~~-hictaGDD~qaliWDl~q~~~~~~~dPilay~--a~~E 337 (364)
T KOG0290|consen 273 IRVPCTPVARLRN------------HQASVNGIAWAPHSSS-HICTAGDDCQALIWDLQQMPRENGEDPILAYT--AGGE 337 (364)
T ss_pred ecCCCcceehhhc------------CcccccceEecCCCCc-eeeecCCcceEEEEecccccccCCCCchhhhh--ccce
Confidence 9865 56667776 7799999999998655 78999999999999998654322222222222 3467
Q ss_pred eeeccCCCcccCCCCCC-CceeEEEecCCCeEEEE
Q 016457 323 VRSVLPMPSVQGRPAQS-HGIFGWTGGEDGRLCCW 356 (389)
Q Consensus 323 v~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~v~iW 356 (389)
|+.+ .|++ ...+++.+. ++++.+-
T Consensus 338 VNqi---------~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 338 VNQI---------QWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred eeee---------eecccCCCEEEEEe-cCeeeEE
Confidence 8888 7774 345556554 4555443
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.3e-22 Score=169.82 Aligned_cols=248 Identities=14% Similarity=0.166 Sum_probs=187.3
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCC--------ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT--------GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 109 (389)
.+.|++++|.|....|++++.||+|.+|+++. -+++.+|++|.++|.|++..+++ +.+++|+.||+|+.|
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~--~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG--EHCYSGGIDGTIRCW 371 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc--eEEEeeccCceeeee
Confidence 78899999999999999999999999999932 25778899999999999999999 799999999999999
Q ss_pred EccCC----------eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-cccCCeeEEEEecC
Q 016457 110 DTRSF----------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-SHVEDVTQVHFVPN 178 (389)
Q Consensus 110 d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~ 178 (389)
++... .....+.+|.+.|+.+++++...+|++++.||++++|+.....+ .++.. ...+...++.+-..
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence 65411 23467889999999999999999999999999999999876665 22221 12233456666554
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCCCccceee-----eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEe
Q 016457 179 NQNKVVSASVDGLICTFDTGGDINDDDLLESV-----INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF 253 (389)
Q Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 253 (389)
.....++...-+.-.++++..... ..+... ......+..+.++ ++..+.+++..|+.|+++|..+++.++..
T Consensus 451 ~~a~~~~s~~~~~~~~~~~ev~s~--~~~~~s~~~~~~~~~~~in~vVs~-~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 451 RPAHSLASFRFGYTSIDDMEVVSD--LLIFESSASPGPRRYPQINKVVSH-PTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred hhHhhhhhcccccccchhhhhhhh--eeeccccCCCcccccCccceEEec-CCCCeeEecccCCceecccccccccchhe
Confidence 421233332233333333332210 001000 1112346677777 66789999999999999999999999888
Q ss_pred ecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 254 ENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
.. |...++++++.|+|. +|++|+.||.+++|.+.....
T Consensus 528 ~a------------~~~svtslai~~ng~--~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 528 VA------------HKDSVTSLAIDPNGP--YLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred ee------------ccceecceeecCCCc--eEEeecCCceeehhhccchhe
Confidence 77 669999999999999 999999999999999876543
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=2.4e-19 Score=161.50 Aligned_cols=288 Identities=22% Similarity=0.387 Sum_probs=222.5
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce-eeeeecCCC-CcEEEEEE-eCCCCCCEEEEEec-CCeEEEEEccC
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ-YSGECKGHS-STVNQISF-SGPSTPHVLHSCSS-DGTIRAWDTRS 113 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~-~~v~~i~~-~~~~~~~~l~s~~~-dg~i~iwd~~~ 113 (389)
...+.++.+.+.+..++.++.|+.+.+|+...+. ....+..+. ..+..+.+ .+++. ..++..+. |+.+.+|+...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN-SILLASSSLDGTVKLWDLST 143 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcc-eEEeccCCCCccEEEEEecC
Confidence 7889999999999999999999999999998776 666666644 37777877 66662 24555444 99999999998
Q ss_pred -CeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457 114 -FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL 191 (389)
Q Consensus 114 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 191 (389)
......+..|...|..++|+|++..+++++. |+.+++|++..+..+..+. .|...+.+++|+|+++..+++++.|+.
T Consensus 144 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEecCCCc
Confidence 7888899999999999999999988888875 9999999999988888888 799999999999988524444589999
Q ss_pred EEEEecCCCCCCCccce-eeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce-eEEeecccccccCCccCCCC
Q 016457 192 ICTFDTGGDINDDDLLE-SVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN-VASFENARSLASDSWTLDDV 269 (389)
Q Consensus 192 i~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~ 269 (389)
|++||...+ .... .+..|.... -..|+ +++.++++++.|+.+++|++..... +..+.. |.
T Consensus 223 i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~------------~~ 284 (466)
T COG2319 223 IRLWDLSTG----KLLRSTLSGHSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG------------HS 284 (466)
T ss_pred EEEEECCCC----cEEeeecCCCCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCCcEEEEEec------------CC
Confidence 999987732 2333 355555554 33677 5667888999999999999987665 444422 66
Q ss_pred CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe-cccceeeeeccCCCcccCCCCCCCceeEEEe-
Q 016457 270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV-GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG- 347 (389)
Q Consensus 270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~- 347 (389)
..+.++.|.|++. .+++++.|+.+.+|+..+... ..... ..|...+..+ .|.+++..++.+
T Consensus 285 ~~v~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 347 (466)
T COG2319 285 SSVLSVAFSPDGK--LLASGSSDGTVRLWDLETGKL------LSSLTLKGHEGPVSSL---------SFSPDGSLLVSGG 347 (466)
T ss_pred ccEEEEEECCCCC--EEEEeeCCCcEEEEEcCCCce------EEEeeecccCCceEEE---------EECCCCCEEEEee
Confidence 8899999999777 566688889999998887664 12221 2677677777 663332444555
Q ss_pred cCCCeEEEEeccCCc
Q 016457 348 GEDGRLCCWLSDDSS 362 (389)
Q Consensus 348 ~~dg~v~iW~~~~~~ 362 (389)
..|+.+++|++....
T Consensus 348 ~~d~~~~~~~~~~~~ 362 (466)
T COG2319 348 SDDGTIRLWDLRTGK 362 (466)
T ss_pred cCCCcEEeeecCCCc
Confidence 688999999998764
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=150.69 Aligned_cols=294 Identities=12% Similarity=0.045 Sum_probs=202.5
Q ss_pred eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec-CCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457 31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108 (389)
Q Consensus 31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i 108 (389)
+...+++ .+.|+++.|..++ +|.+|...|.|++|++.+......++ .|...|+.+.-.|++ .+.+-+.|..+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d---~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND---SLDTQGRDPLLIL 81 (323)
T ss_pred CeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc---chhhcCCCceEEE
Confidence 3445556 7889999998877 58899999999999999988888888 578899999998876 7999999999999
Q ss_pred EEccCCeEEEEEEcCCCCeEEEEEeC-----CCC---eEEEeecCC--eEEEEECcCCceeeeee---ecccCCeeEEEE
Q 016457 109 WDTRSFHEVWSVTAGSQEIFCFSFGG-----STD---YLLAAGCGS--QIQFWDWRNKKQVACLE---ESHVEDVTQVHF 175 (389)
Q Consensus 109 wd~~~~~~~~~~~~~~~~v~~~~~~~-----~~~---~l~~~~~d~--~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~ 175 (389)
|++.-+..+.. |.-.++++.|.+ ..+ .++..-..+ .+++-|......+.... .+..+.+.|..+
T Consensus 82 w~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 82 WTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 99986544322 223344444432 111 112111111 12223322222222111 123456777764
Q ss_pred ecC-C-CCeEEEEeCCCcEEEEecCCCCC------CCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457 176 VPN-N-QNKVVSASVDGLICTFDTGGDIN------DDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG 247 (389)
Q Consensus 176 ~~~-~-~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 247 (389)
... + ..++++|.++|.+.+||+.++.. ..+.......|..+|.++.+. +....=++++.+..+..|++...
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeeccc
Confidence 332 2 12677888999999999997521 112334455688899999997 44445567777788889988643
Q ss_pred ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeecc
Q 016457 248 QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVL 327 (389)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 327 (389)
.....+.....+ ..-.+..+.+-||++ .+++++.|+.|+||+.++.+. +..+. -|+..|+++
T Consensus 238 ~gslq~~~e~~l--------knpGv~gvrIRpD~K--IlATAGWD~RiRVyswrtl~p------LAVLk-yHsagvn~v- 299 (323)
T KOG0322|consen 238 TGSLQIRKEITL--------KNPGVSGVRIRPDGK--ILATAGWDHRIRVYSWRTLNP------LAVLK-YHSAGVNAV- 299 (323)
T ss_pred cCcccccceEEe--------cCCCccceEEccCCc--EEeecccCCcEEEEEeccCCc------hhhhh-hhhcceeEE-
Confidence 111111110000 124577888999999 999999999999999999765 77776 899999999
Q ss_pred CCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457 328 PMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS 358 (389)
Q Consensus 328 ~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~ 358 (389)
+|+|+...+|++|.|+.|.+|++
T Consensus 300 --------Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 --------AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --------EeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999986
No 177
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=2.1e-20 Score=165.47 Aligned_cols=264 Identities=16% Similarity=0.106 Sum_probs=195.8
Q ss_pred CCeEEEEecCce---eeeeecCcceEEEeecCC-CCeEEEEecCCeEEEEeCCCcee--eee----ecCCCCcEEEEEEe
Q 016457 20 VNSIKRFGLKNS---IQTNFGDDYVFEIVPKND-WSLMAVSLSTNVVKLYSPVTGQY--SGE----CKGHSSTVNQISFS 89 (389)
Q Consensus 20 ~~~i~~w~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~--~~~----~~~~~~~v~~i~~~ 89 (389)
++.+.+|+++.+ -..+.....|+|+.|+|. ..++|.|+.+|+|.+||+..+.. ... ...|..+++.+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 348999999754 344444899999999995 47888888899999999987654 222 23589999999998
Q ss_pred CCCCCCEEEEEecCCeEEEEEccCCeE------EEEEE------cCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECc--
Q 016457 90 GPSTPHVLHSCSSDGTIRAWDTRSFHE------VWSVT------AGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWR-- 154 (389)
Q Consensus 90 ~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~-- 154 (389)
.+..+.-+++++.||.|..|+++.-.. ..... .....+++++|.+.... +++|+.+|.|.--+..
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 876445599999999999998874321 11111 11457899999886655 5666668988773322
Q ss_pred -CCc-----eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457 155 -NKK-----QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK 228 (389)
Q Consensus 155 -~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (389)
... ....+. .|.++|+++.++|-+...|++++ |-+++||.... ...++..+..+...+.+++|+|-...
T Consensus 381 ~~~~~~~~~~~~~~~-~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~---~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFI-THIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV---IASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred ccccccccccccccc-ccCcceEeeecCCCccceeeeec-cceeEeccccC---CCCcchhhhhccceeeeeEEcCcCce
Confidence 221 122344 68899999999999975666666 99999998873 23456666667777999999987788
Q ss_pred EEEEEecCCcEEEEEcCCC--ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 229 HLWCLTHIETLSIWDWKDG--QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 229 ~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
.++++..||.|.+||+... .++.+... +......+.|+++|+ +|++|...|.+++|++..
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~------------~~~~l~~~~~s~~g~--~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKV------------CSPALTRVRWSPNGK--LLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccc------------cccccceeecCCCCc--EEEEecCCCcEEEEEcCc
Confidence 9999999999999998754 23333322 235667788888898 899999999999999964
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=2.4e-20 Score=147.46 Aligned_cols=257 Identities=19% Similarity=0.229 Sum_probs=190.5
Q ss_pred ccccCCCCeEEEEecCc--------------eeeeeec--CcceEEEeec-------CCCCeEEEEecCCeEEEEeCCCc
Q 016457 14 SQSCDNVNSIKRFGLKN--------------SIQTNFG--DDYVFEIVPK-------NDWSLMAVSLSTNVVKLYSPVTG 70 (389)
Q Consensus 14 ~~s~~~~~~i~~w~~~~--------------~~~~~~~--~~~v~~~~~~-------~~~~~l~~~~~d~~i~iw~~~~~ 70 (389)
.-+.+.|+.+.+|++.. ....++- .+.|...+|- |+..++|+.+.+.-|++||.-+|
T Consensus 64 iL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG 143 (406)
T KOG2919|consen 64 ILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTG 143 (406)
T ss_pred EEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeecccc
Confidence 33566788899998731 1111221 6667777764 67789999999999999999999
Q ss_pred eeeeeecC--CCC---cEEEEEEeCCCCCCEEEEEecCCeEEEEEc-cCCeEEE--E-E----EcCCCCeEEEEEeCCCC
Q 016457 71 QYSGECKG--HSS---TVNQISFSGPSTPHVLHSCSSDGTIRAWDT-RSFHEVW--S-V----TAGSQEIFCFSFGGSTD 137 (389)
Q Consensus 71 ~~~~~~~~--~~~---~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~--~-~----~~~~~~v~~~~~~~~~~ 137 (389)
+...++.+ |.+ ...+++|+|+| .+|++| ....|++||+ +.|+... . + .+..+.|.|++|+|...
T Consensus 144 ~lraSy~~ydh~de~taAhsL~Fs~DG--eqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~ 220 (406)
T KOG2919|consen 144 KLRASYRAYDHQDEYTAAHSLQFSPDG--EQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDS 220 (406)
T ss_pred ccccchhhhhhHHhhhhheeEEecCCC--CeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCC
Confidence 98888765 433 35689999999 577776 4668999999 4443221 1 1 12267889999999887
Q ss_pred e-EEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC-CCcEEEEecCCCCCCCccceeeeccCC
Q 016457 138 Y-LLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV-DGLICTFDTGGDINDDDLLESVINVGT 215 (389)
Q Consensus 138 ~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 215 (389)
. +++++....+-||.-..+.+++.+- +|.+.|+.+.|.++|. .|++|+. |-.|..||+|.. ..++..+..|-.
T Consensus 221 ~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~---~~pv~~L~rhv~ 295 (406)
T KOG2919|consen 221 KTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYS---RDPVYALERHVG 295 (406)
T ss_pred cceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhc---cchhhhhhhhcc
Confidence 5 5555557788888877888998888 9999999999999995 8888875 678999999943 344555555544
Q ss_pred -ceeeEEEe-cCCCcEEEEEecCCcEEEEEcCC-CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC
Q 016457 216 -SVGKVGFF-GETNKHLWCLTHIETLSIWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA 292 (389)
Q Consensus 216 -~i~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d 292 (389)
.-..|.|. .+.+++|++|+.||.|++||+.+ +..+..+.. +...+..++++|--. ++++++..
T Consensus 296 ~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~------------~sd~vNgvslnP~mp--ilatssGq 361 (406)
T KOG2919|consen 296 DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN------------YSDTVNGVSLNPIMP--ILATSSGQ 361 (406)
T ss_pred CccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc------------ccccccceecCcccc--eeeeccCc
Confidence 33345553 26788999999999999999988 565666655 668999999999866 66776543
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.9e-20 Score=157.99 Aligned_cols=215 Identities=13% Similarity=0.122 Sum_probs=162.5
Q ss_pred eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457 32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109 (389)
Q Consensus 32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 109 (389)
...+.| .+.|+|+.|+.+|.+|++|++|-.+.|||.-..+++..+ .+|...|.++.|.|..+..++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 345667 899999999999999999999999999999887887776 579999999999998766799999999999999
Q ss_pred EccCC----------eEEEEEEcCCCCeEEEEEeCCC-CeEEEeecCCeEEEEECcCCcee----------eeeeecccC
Q 016457 110 DTRSF----------HEVWSVTAGSQEIFCFSFGGST-DYLLAAGCGSQIQFWDWRNKKQV----------ACLEESHVE 168 (389)
Q Consensus 110 d~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----------~~~~~~~~~ 168 (389)
|+... .....+..|...|..++-.|.+ ..+.+++.||+|+-+|++..... ..+. ..--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~-~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN-PQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc-hhhh
Confidence 99842 3455567788889999999888 56778888999999999964211 1111 1223
Q ss_pred CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC--------------ccceeee-cc-----------CCceeeEEE
Q 016457 169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD--------------DLLESVI-NV-----------GTSVGKVGF 222 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------------~~~~~~~-~~-----------~~~i~~~~~ 222 (389)
...|+.++|..+++|++|+.|-..++||.+...+.. .++..+. +| ...++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 567899999999999999999999999965221110 0111111 11 012566788
Q ss_pred ecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457 223 FGETNKHLWCLTHIETLSIWDWKDGQ 248 (389)
Q Consensus 223 ~~~~~~~l~~~~~d~~i~i~d~~~~~ 248 (389)
+ |+|.-|++.-....|+++|+..++
T Consensus 282 n-pNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 282 N-PNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred C-CCCcEEEEeeCCeEEEEEeecCCC
Confidence 8 666666666666689999987554
No 180
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.88 E-value=6.3e-20 Score=144.90 Aligned_cols=207 Identities=17% Similarity=0.181 Sum_probs=169.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc---eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc-C
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG---QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR-S 113 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~-~ 113 (389)
..+|+|.+|++|+..+|++..+..|.||..... +..+++..|...|+.|+|+|.. +.|++++.|..-++|... .
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s--nrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS--NRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC--CceeEccCCCCccccccCCC
Confidence 688999999999999999999999999997655 4677888999999999999998 799999999999999984 3
Q ss_pred C--eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee---eeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457 114 F--HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV---ACLEESHVEDVTQVHFVPNNQNKVVSASV 188 (389)
Q Consensus 114 ~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 188 (389)
+ ++...+..++..++++.|+|.++.+++++....|.+|-++....- +.+...+.+.|+++.|+|++- ++++|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eeccccc
Confidence 3 445566667899999999999999999999999999988754432 223346788999999999984 9999999
Q ss_pred CCcEEEEecCCCC--------------CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457 189 DGLICTFDTGGDI--------------NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ 248 (389)
Q Consensus 189 d~~i~i~d~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 248 (389)
|+.+++|..--.. +....+.+.....+.+..+.|+ +.|..|+-.+.|+.+.+-|.....
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-PSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-CCCCEeeEecCCCceEEeecCCCc
Confidence 9999999764111 0111222333556789999999 788999999999999999987654
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=1.3e-20 Score=152.65 Aligned_cols=211 Identities=13% Similarity=0.141 Sum_probs=166.0
Q ss_pred eeeeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCCCc-------eeeeeecCCCCcEEEEEEeCCCCCCEEEEEec
Q 016457 32 IQTNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTG-------QYSGECKGHSSTVNQISFSGPSTPHVLHSCSS 102 (389)
Q Consensus 32 ~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~ 102 (389)
.....| ..+|..++|+|-+ ..||+|+.|.+|.||++..+ +++..+.+|...|.-++|+|... +.|+|++.
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~ 152 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGS 152 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccC
Confidence 334455 8899999999954 68999999999999998654 45677889999999999999876 79999999
Q ss_pred CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC-CeeEEEEecCCCC
Q 016457 103 DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE-DVTQVHFVPNNQN 181 (389)
Q Consensus 103 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 181 (389)
|.+|.+||+.+++.+.++. |...|.++.|+.+|..+++++.|..|+|||.++++.+..-. +|.+ .-..+.|..++.
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGK- 229 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCc-
Confidence 9999999999999998888 99999999999999999999999999999999999998875 6665 355677888885
Q ss_pred eEEEEe---CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcE-EEEEecCCcEEEEEcCCCce
Q 016457 182 KVVSAS---VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKH-LWCLTHIETLSIWDWKDGQN 249 (389)
Q Consensus 182 ~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~ 249 (389)
++.+|. .++.+-+||...-. .. .........+.|.---|. ++..+ .++|-.|+.|+.|.+.+..+
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~-eP-~~~~elDtSnGvl~PFyD-~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLE-EP-IALQELDTSNGVLLPFYD-PDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eeeeccccccccceeccCccccc-Cc-ceeEEeccCCceEEeeec-CCCCEEEEEecCCcceEEEEecCCCc
Confidence 555554 36789999988432 11 222223344455444455 44444 45666799999999987654
No 182
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.9e-21 Score=160.47 Aligned_cols=299 Identities=15% Similarity=0.177 Sum_probs=223.7
Q ss_pred eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457 34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111 (389)
Q Consensus 34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~ 111 (389)
.+.. .+.|..+.|+..|..|++|+.|..|.+||...++....+ .+|...|....|-|......+++++.||.+++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 3444 889999999999999999999999999999988877776 46999999999998765578999999999998776
Q ss_pred cC-CeE--EEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCceeeeee--ecccC---CeeEEEEecCCCCe
Q 016457 112 RS-FHE--VWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQVACLE--ESHVE---DVTQVHFVPNNQNK 182 (389)
Q Consensus 112 ~~-~~~--~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~---~v~~~~~~~~~~~~ 182 (389)
.. +.+ ...+..|.++|.-++.-|...+ ++++|.|+.+.-+|++...+...+. ..+.. ....++.+|...+.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 53 332 3445668899999999887655 7777889999999999876543332 12333 57889999998889
Q ss_pred EEEEeCCCcEEEEecCCCCCC--Cccceeee------ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc------
Q 016457 183 VVSASVDGLICTFDTGGDIND--DDLLESVI------NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ------ 248 (389)
Q Consensus 183 l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------ 248 (389)
+++++.|..+++||.+.-... ...+..+. ...-.|++++|+ .++.-|+++..|-.|++|.-..+.
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-h~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-HDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec-CCccceeeeecccceEEeccccccCCCCCC
Confidence 999999999999999853211 01111211 233568999998 566667777888899999643221
Q ss_pred ------eeEE-eecccccccCCccCCCCCceeeecc-cCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc
Q 016457 249 ------NVAS-FENARSLASDSWTLDDVDYFVDCHY-PGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT 320 (389)
Q Consensus 249 ------~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~ 320 (389)
.++. |++|+ ....|-.+-| -|... |+++|+.-|.|.||+-.+++. +..+. +..
T Consensus 376 ~s~~~~~~k~vYKGHr----------N~~TVKgVNFfGPrsE--yVvSGSDCGhIFiW~K~t~ei------i~~Me-gDr 436 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHR----------NSRTVKGVNFFGPRSE--YVVSGSDCGHIFIWDKKTGEI------IRFME-GDR 436 (559)
T ss_pred Ccchhhccchhhcccc----------cccccceeeeccCccc--eEEecCccceEEEEecchhHH------HHHhh-ccc
Confidence 1222 66655 3455777765 45556 999999999999999999887 55555 555
Q ss_pred eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 321 AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 321 ~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
..|+|+-| +|--..|||+|-|..|+||.....
T Consensus 437 ~VVNCLEp---------HP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 437 HVVNCLEP---------HPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ceEeccCC---------CCCCchhhccCCccceeeecCCcc
Confidence 68999943 333335699999999999998544
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=9.3e-19 Score=151.49 Aligned_cols=275 Identities=14% Similarity=0.194 Sum_probs=177.1
Q ss_pred EEecCCeEEEEeCCC-ce--eeeeecCCCCcEEEEEEeCCCCCCEEEEE-ecCCeEEEEEcc-CCeE--EEEEEcCCCCe
Q 016457 55 VSLSTNVVKLYSPVT-GQ--YSGECKGHSSTVNQISFSGPSTPHVLHSC-SSDGTIRAWDTR-SFHE--VWSVTAGSQEI 127 (389)
Q Consensus 55 ~~~~d~~i~iw~~~~-~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~iwd~~-~~~~--~~~~~~~~~~v 127 (389)
+...++.|.+|++.+ ++ .+..+. +.+....++++|++ ++|+++ ..++.|.+|++. +++. +..... ....
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~--~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~~~p 82 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDK--RHLYVGVRPEFRVLSYRIADDGALTFAAESPL-PGSP 82 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCC--CEEEEEECCCCcEEEEEECCCCceEEeeeecC-CCCc
Confidence 335689999999964 43 445554 34567789999998 677655 457889999997 3332 222222 3456
Q ss_pred EEEEEeCCCCeEEEeec-CCeEEEEECcCCc----eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC
Q 016457 128 FCFSFGGSTDYLLAAGC-GSQIQFWDWRNKK----QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN 202 (389)
Q Consensus 128 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 202 (389)
..++++|+++.+++++. ++.|.+||+.+.. .+..+. +.....+++++|+++.++++...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 78999999999998876 8999999997432 222222 3345678899999973445556679999999985221
Q ss_pred CCc-c-ceeeeccCCceeeEEEecCCCcEEEEEec-CCcEEEEEcCC--Cc--eeEEeecccccccCCccCCCCCceeee
Q 016457 203 DDD-L-LESVINVGTSVGKVGFFGETNKHLWCLTH-IETLSIWDWKD--GQ--NVASFENARSLASDSWTLDDVDYFVDC 275 (389)
Q Consensus 203 ~~~-~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (389)
... . .............++|+ +++++++++.. +++|.+|++.. ++ .+..+...... ..+......+
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~i 233 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD------FSDTRWAADI 233 (330)
T ss_pred ccccCCCceecCCCCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc------CCCCccceeE
Confidence 110 0 00111224456789999 77888877766 89999999973 22 23333221100 0012234468
Q ss_pred cccCCCCeEEEEEe-cCCceEEEEEeccCCccccCCCeEEEecccce---eeeeccCCCcccCCCCCCCceeEEEecC-C
Q 016457 276 HYPGEGENLWVIGG-TGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA---VVRSVLPMPSVQGRPAQSHGIFGWTGGE-D 350 (389)
Q Consensus 276 ~~~~~~~~~~l~~g-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~s~~~~~l~s~~~-d 350 (389)
.++|+++ +++++ ..++.|.+|++..... ...+. ++.. ..+.+ .++|||++|+++.. +
T Consensus 234 ~~~pdg~--~lyv~~~~~~~I~v~~i~~~~~------~~~~~-~~~~~~~~p~~~---------~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 234 HITPDGR--HLYACDRTASLISVFSVSEDGS------VLSFE-GHQPTETQPRGF---------NIDHSGKYLIAAGQKS 295 (330)
T ss_pred EECCCCC--EEEEecCCCCeEEEEEEeCCCC------eEEEe-EEEeccccCCce---------EECCCCCEEEEEEccC
Confidence 8999998 55555 4578999999975432 11221 2211 12233 89999999998764 8
Q ss_pred CeEEEEeccC
Q 016457 351 GRLCCWLSDD 360 (389)
Q Consensus 351 g~v~iW~~~~ 360 (389)
++|.+|+++.
T Consensus 296 ~~v~v~~~~~ 305 (330)
T PRK11028 296 HHISVYEIDG 305 (330)
T ss_pred CcEEEEEEcC
Confidence 9999999864
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=149.66 Aligned_cols=270 Identities=11% Similarity=0.153 Sum_probs=189.3
Q ss_pred ccccCCCCeEEEEecCc--eeeeeec-CcceEEEeecC--CCCeEEEEecCCeEEEEeCCCceeee--eecCCC-CcEEE
Q 016457 14 SQSCDNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKN--DWSLMAVSLSTNVVKLYSPVTGQYSG--ECKGHS-STVNQ 85 (389)
Q Consensus 14 ~~s~~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~~~~--~~~~~~-~~v~~ 85 (389)
.|..-+.|+|++||..+ .+..+.+ ...++.+.|.. ....+.+|+.||+|++||++...... .+.++. .+..+
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ 122 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFIC 122 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceE
Confidence 45556779999999864 7778888 88888999876 45789999999999999998764443 344454 56777
Q ss_pred EEEeCCCCCCEEEEEe----cCCeEEEEEccCCeE-EEEE-EcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCc-
Q 016457 86 ISFSGPSTPHVLHSCS----SDGTIRAWDTRSFHE-VWSV-TAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKK- 157 (389)
Q Consensus 86 i~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~- 157 (389)
++.+.++ +.+++|. .+-.|.+||++..+. +..+ ..|...|+++.|+|.++.++++|+ ||.|.+||++...
T Consensus 123 ld~nck~--~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 123 LDLNCKK--NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eeccCcC--CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7776566 5788775 366799999998766 5444 568999999999998877666555 9999999997542
Q ss_pred ---eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcccee-e--------eccCCceeeEEEecC
Q 016457 158 ---QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLES-V--------INVGTSVGKVGFFGE 225 (389)
Q Consensus 158 ---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~--------~~~~~~i~~~~~~~~ 225 (389)
++..+. |...|.++.|..++-..|.+-+..+...+|++..+......... . .....-|.. .+|.
T Consensus 201 eDaL~~viN--~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~--~~~~ 276 (376)
T KOG1188|consen 201 EDALLHVIN--HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE--HSPG 276 (376)
T ss_pred hhhHHHhhc--ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec--ccCC
Confidence 344554 78889999999887447888899999999999855321111000 0 000111111 2234
Q ss_pred CCcEEEEEec-CCcEEEEEcCC---C---ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457 226 TNKHLWCLTH-IETLSIWDWKD---G---QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF 298 (389)
Q Consensus 226 ~~~~l~~~~~-d~~i~i~d~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~ 298 (389)
+...++.++. -+...++-+.. + +.+..+.++ |..-|.++.|...+. ++.+|++||.+.+|
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-----------~~eiVR~i~~~~~~~--~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-----------HEEIVRDILFDVKND--VLYTGGEDGLLQAW 343 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCC-----------cHHHHHHHhhhcccc--eeeccCCCceEEEE
Confidence 5555555555 56666655442 2 233334432 667888999988777 89999999999999
Q ss_pred Eecc
Q 016457 299 PVNY 302 (389)
Q Consensus 299 ~~~~ 302 (389)
..+.
T Consensus 344 k~~d 347 (376)
T KOG1188|consen 344 KVED 347 (376)
T ss_pred ecCC
Confidence 8643
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.87 E-value=1.5e-18 Score=139.72 Aligned_cols=303 Identities=13% Similarity=0.118 Sum_probs=213.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC--eEEEEEccCCe
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG--TIRAWDTRSFH 115 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~ 115 (389)
...+..+.|+.+...|.+|+.|| -++|+.+..............|-.+-|+. .++|..+.+. .+++.+.+.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc----ceeEEEecCCCceEEEEEcccCc
Confidence 45577778999999999999888 67887765433222222334566666763 3666665544 49999999888
Q ss_pred EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee--cccCCeeEEEEecCCCCeEEEEe--CCCc
Q 016457 116 EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE--SHVEDVTQVHFVPNNQNKVVSAS--VDGL 191 (389)
Q Consensus 116 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~--~d~~ 191 (389)
.+..+.. ..+|.++.++ .++|+++=. ..|+|||+++.+.+.++.. .+...+.++.+++.+. +++--+ ..|.
T Consensus 80 ~ICe~~f-pt~IL~VrmN--r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~-ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 80 TICEIFF-PTSILAVRMN--RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANC-YLAYPGSTTSGD 154 (391)
T ss_pred eEEEEec-CCceEEEEEc--cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCc-eEEecCCCCCce
Confidence 8888776 4889999995 556666655 4599999999999988873 3555677777777663 666533 3688
Q ss_pred EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC-cEEEEEcCCCceeEEeecccccccCCccCCCCC
Q 016457 192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE-TLSIWDWKDGQNVASFENARSLASDSWTLDDVD 270 (389)
Q Consensus 192 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (389)
|.+||..+ .+....+..|++++.+++|+ ++|.+|++++..| .|++|.+.+|+.+.+|..+- ...
T Consensus 155 V~l~d~~n----l~~v~~I~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~----------~~~ 219 (391)
T KOG2110|consen 155 VVLFDTIN----LQPVNTINAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT----------YPV 219 (391)
T ss_pred EEEEEccc----ceeeeEEEecCCceeEEEEC-CCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc----------eee
Confidence 99999984 35677788999999999999 8999999999999 57999999999999998644 336
Q ss_pred ceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeE--EEe----cccc----eeeeecc-----------CC
Q 016457 271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEA--VLV----GGHT----AVVRSVL-----------PM 329 (389)
Q Consensus 271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~--~~~----~~h~----~~v~~~~-----------~~ 329 (389)
.|.+++|+|+++ +|++.+..++|+||.++.........+.. ... ..-. ..|..++ +.
T Consensus 220 ~IySL~Fs~ds~--~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~ 297 (391)
T KOG2110|consen 220 SIYSLSFSPDSQ--FLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPE 297 (391)
T ss_pred EEEEEEECCCCC--eEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccC
Confidence 789999999999 99999999999999987654311110000 000 0000 0111110 11
Q ss_pred Ccc-cCCCCC--CCceeEEEecCCCeEEEEeccCCcccchh
Q 016457 330 PSV-QGRPAQ--SHGIFGWTGGEDGRLCCWLSDDSSEINRS 367 (389)
Q Consensus 330 ~~~-~~~~~s--~~~~~l~s~~~dg~v~iW~~~~~~~~~~~ 367 (389)
.+. -.+.+. +...++..++.||.+..|+++....+.|.
T Consensus 298 s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~ 338 (391)
T KOG2110|consen 298 SGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECA 338 (391)
T ss_pred CCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeE
Confidence 110 112344 46778888999999999999976444443
No 186
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=2.5e-20 Score=151.01 Aligned_cols=211 Identities=14% Similarity=0.231 Sum_probs=163.4
Q ss_pred eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-------eEEEEEEcCCCCeEEEEEeCCCC-eEEEeecC
Q 016457 74 GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-------HEVWSVTAGSQEIFCFSFGGSTD-YLLAAGCG 145 (389)
Q Consensus 74 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d 145 (389)
-.+.||+++|..++|+|.+. +.||||+.|.+|.||++..+ +++..+.+|...|--++|+|.-. .|+++|.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 34578999999999999876 79999999999999998643 56778899999999999999755 46677789
Q ss_pred CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCC-ceeeEEEec
Q 016457 146 SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT-SVGKVGFFG 224 (389)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~ 224 (389)
..|.+||+.+++.+.++. |...|.++.|+.+|. +|++.+.|..|+|||.+++ +.+..-..|.+ .-..+.|.
T Consensus 154 n~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~----~~v~e~~~heG~k~~Raifl- 225 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRG----TVVSEGVAHEGAKPARAIFL- 225 (472)
T ss_pred ceEEEEeccCCceeeecC--CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCC----cEeeecccccCCCcceeEEe-
Confidence 999999999999999986 999999999999995 9999999999999999965 34444445553 33455566
Q ss_pred CCCcEEEEEe---cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457 225 ETNKHLWCLT---HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN 301 (389)
Q Consensus 225 ~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 301 (389)
.++.++.+|- .+..+-+||..+.+....+.... .+..|.---|.++.+- +-++|-.|+.|+.|.+.
T Consensus 226 ~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD----------tSnGvl~PFyD~dt~i-vYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 226 ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD----------TSNGVLLPFYDPDTSI-VYLCGKGDSSIRYFEIT 294 (472)
T ss_pred ccCceeeeccccccccceeccCcccccCcceeEEec----------cCCceEEeeecCCCCE-EEEEecCCcceEEEEec
Confidence 5666444443 35689999987654433333221 3355666667777664 34678899999999987
Q ss_pred cCC
Q 016457 302 YGG 304 (389)
Q Consensus 302 ~~~ 304 (389)
...
T Consensus 295 ~d~ 297 (472)
T KOG0303|consen 295 NEP 297 (472)
T ss_pred CCC
Confidence 654
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=3e-20 Score=160.40 Aligned_cols=258 Identities=14% Similarity=0.237 Sum_probs=200.7
Q ss_pred ccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457 16 SCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS 92 (389)
Q Consensus 16 s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~ 92 (389)
-...+..+.+||.. ..++++++ ++.|+|++|+.||+.+|+|+.|..|.+|+.+- +-+..+ .|.+.|.|+.|+|-.
T Consensus 28 ~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~ 105 (1081)
T KOG1538|consen 28 ILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPIT 105 (1081)
T ss_pred EEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchH
Confidence 34456778999985 68889999 99999999999999999999999999998542 222233 499999999999988
Q ss_pred CCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--ecccCCe
Q 016457 93 TPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDV 170 (389)
Q Consensus 93 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v 170 (389)
+.|+|++-. ..-+|....... ...+. ...+.+++|..+|.+++.|-.+|+|.+-+ .++++...+. .+..++|
T Consensus 106 --h~LasCsLs-dFglWS~~qK~V-~K~ks-s~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspi 179 (1081)
T KOG1538|consen 106 --HQLASCSLS-DFGLWSPEQKSV-SKHKS-SSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPI 179 (1081)
T ss_pred --HHhhhcchh-hccccChhhhhH-Hhhhh-heeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCc
Confidence 789988765 377898764332 22222 46789999998888888888899999986 3455544444 2467899
Q ss_pred eEEEEecCCC----CeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457 171 TQVHFVPNNQ----NKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD 246 (389)
Q Consensus 171 ~~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 246 (389)
.+++|+|... ..+++.....++.+|.+... .+......+....++.+. ++|.+++.|+.|+.+++|- +.
T Consensus 180 wsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-----~Igk~r~L~FdP~CisYf-~NGEy~LiGGsdk~L~~fT-R~ 252 (1081)
T KOG1538|consen 180 WSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-----QIGKDRALNFDPCCISYF-TNGEYILLGGSDKQLSLFT-RD 252 (1081)
T ss_pred eEEEecCCCCCCccceEEEEeccceeEEEEecce-----eecccccCCCCchhheec-cCCcEEEEccCCCceEEEe-ec
Confidence 9999999742 36778888888888888742 233333445566788888 8899999999999999996 45
Q ss_pred CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
|-.+.++.. ...+|+.++..|+++ +++.|..||+|..|++..
T Consensus 253 GvrLGTvg~------------~D~WIWtV~~~PNsQ--~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 253 GVRLGTVGE------------QDSWIWTVQAKPNSQ--YVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CeEEeeccc------------cceeEEEEEEccCCc--eEEEEEccCeeehhhhHH
Confidence 666666665 448999999999999 889999999999998753
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=5.2e-20 Score=143.35 Aligned_cols=221 Identities=17% Similarity=0.142 Sum_probs=171.8
Q ss_pred eEEEEecCceeee-----------eec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee-eeee-----cCCCCc
Q 016457 22 SIKRFGLKNSIQT-----------NFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY-SGEC-----KGHSST 82 (389)
Q Consensus 22 ~i~~w~~~~~~~~-----------~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~-~~~~-----~~~~~~ 82 (389)
.+-+|++.+.... +.. -+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+ .+|...
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS 172 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence 3578887643332 221 45899999999999998876 88999999987754 3333 235667
Q ss_pred EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE-cCCCCeEEEEEeCCCCeEEEe-ecCCeEEEEECcC-Ccee
Q 016457 83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT-AGSQEIFCFSFGGSTDYLLAA-GCGSQIQFWDWRN-KKQV 159 (389)
Q Consensus 83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~-~~~~ 159 (389)
.++-+|+|...++.+++. .|+++..||+++.++...++ .|...|..+.|+|+...++++ |.||.|++||.|. ..++
T Consensus 173 ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred ecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc
Confidence 889999995444667665 58899999999988777665 467889999999998876654 5589999999995 4578
Q ss_pred eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC-------------------------CCCccceeeeccC
Q 016457 160 ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI-------------------------NDDDLLESVINVG 214 (389)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------------------------~~~~~~~~~~~~~ 214 (389)
+++. +|...|.++.|+|....++++|+.|..|.+|...+-. .....+..+..|+
T Consensus 252 ~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 252 QELP-GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred cccC-CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 8888 8999999999999887799999999999999765321 0112344667789
Q ss_pred CceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457 215 TSVGKVGFFGETNKHLWCLTHIETLSIWDWK 245 (389)
Q Consensus 215 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 245 (389)
..|.+++|+..+.-.+++-+.||.+.|=.+.
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 9999999997788889999999999876553
No 189
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.86 E-value=4.6e-19 Score=162.70 Aligned_cols=269 Identities=14% Similarity=0.138 Sum_probs=180.7
Q ss_pred EecCc-eeeeeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCCCc-------eeeeeecCCCCcEEEEEEeCCCCCC
Q 016457 26 FGLKN-SIQTNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTG-------QYSGECKGHSSTVNQISFSGPSTPH 95 (389)
Q Consensus 26 w~~~~-~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~ 95 (389)
|+.+. .+..+.. ...|..++.++.. .++++|+.||+|++|+...- +...++......+.++...+.+ +
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~--~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG--D 1111 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--C
Confidence 77653 4555554 7777788877655 99999999999999997532 2223344356789999999888 7
Q ss_pred EEEEEecCCeEEEEEccCC--e-----EEEEEEcC-CCCeEEE-EEeCC-CC-eEEEeecCCeEEEEECcCCceeeeeee
Q 016457 96 VLHSCSSDGTIRAWDTRSF--H-----EVWSVTAG-SQEIFCF-SFGGS-TD-YLLAAGCGSQIQFWDWRNKKQVACLEE 164 (389)
Q Consensus 96 ~l~s~~~dg~i~iwd~~~~--~-----~~~~~~~~-~~~v~~~-~~~~~-~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~ 164 (389)
.+|.++.||.|++.+++.. + +.+..+.+ .+.+.++ +|... .. .++.+...+.|..||+++.....+++.
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 9999999999999998752 1 12222222 2333333 34322 23 456666689999999998877665541
Q ss_pred -cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee-eccCCceeeEEEecCCC--cEEEEEe--cCCc
Q 016457 165 -SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV-INVGTSVGKVGFFGETN--KHLWCLT--HIET 238 (389)
Q Consensus 165 -~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~--~~l~~~~--~d~~ 238 (389)
...+.|++++.+|.+. ++++|+..|.+.+||+|-+ .++... ..+..++..+..+|-.+ ...++++ ..+.
T Consensus 1192 ~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~----~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFR----VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred CccccceeEEEecCCce-EEEEecCCceEEEEEeecC----ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 3346799999999994 9999999999999999943 222222 23456778777764333 4444444 5779
Q ss_pred EEEEEcCCCceeEEeecccccccCCccC-------CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457 239 LSIWDWKDGQNVASFENARSLASDSWTL-------DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG 303 (389)
Q Consensus 239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~ 303 (389)
|.+|++.+|.+...+......+..+|.. ++.-....+.+...+. ++.+|+.|..|+.||....
T Consensus 1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~--~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG--FLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc--eeeecCCccceeeccCCCc
Confidence 9999999998777776542222222221 1222333344443344 7899999999999997654
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1e-19 Score=141.77 Aligned_cols=217 Identities=16% Similarity=0.205 Sum_probs=167.0
Q ss_pred cCCCCeEEEEecCce---e---eee-----ec-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCce---eeeeecCCC
Q 016457 17 CDNVNSIKRFGLKNS---I---QTN-----FG-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQ---YSGECKGHS 80 (389)
Q Consensus 17 ~~~~~~i~~w~~~~~---~---~~~-----~~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~ 80 (389)
++....+|+|.+... + ..+ .. ..+++++.|+. +-++|.+++-|.+..|||++++. ....+-+|.
T Consensus 117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD 196 (364)
T KOG0290|consen 117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD 196 (364)
T ss_pred hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence 344568999998621 1 011 11 67899999986 55789999999999999999873 356677899
Q ss_pred CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC---CCCeEEEEEeCCCCeEEEee-c-CCeEEEEECcC
Q 016457 81 STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG---SQEIFCFSFGGSTDYLLAAG-C-GSQIQFWDWRN 155 (389)
Q Consensus 81 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~-~-d~~i~iwd~~~ 155 (389)
..|..|+|...+. +.+++.+.||.||+||++..+....+... ..+...++|++++.++++.- . ...|.|.|+|.
T Consensus 197 KEV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 197 KEVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred cceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 9999999998654 79999999999999999976654444332 46788999998877665543 3 57899999997
Q ss_pred C-ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC--CCccceeeeccCCceeeEEEecCCCcEEEE
Q 016457 156 K-KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN--DDDLLESVINVGTSVGKVGFFGETNKHLWC 232 (389)
Q Consensus 156 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 232 (389)
. .++.++. .|+..|+.|+|.|..++.|++++.|..+.+||+..... ...++... ..+..|+.+.|++..++.++.
T Consensus 276 P~tpva~L~-~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 276 PCTPVARLR-NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred CCcceehhh-cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEE
Confidence 5 5678888 89999999999999988999999999999999985322 11222222 256789999999777778877
Q ss_pred EecC
Q 016457 233 LTHI 236 (389)
Q Consensus 233 ~~~d 236 (389)
+...
T Consensus 354 ~~~k 357 (364)
T KOG0290|consen 354 CFGK 357 (364)
T ss_pred EecC
Confidence 7553
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=8.7e-18 Score=145.43 Aligned_cols=268 Identities=12% Similarity=0.139 Sum_probs=174.2
Q ss_pred cCCCCeEEEEecCc-----eeeeeecCcceEEEeecCCCCeEEEEe-cCCeEEEEeCC-Ccee--eeeecCCCCcEEEEE
Q 016457 17 CDNVNSIKRFGLKN-----SIQTNFGDDYVFEIVPKNDWSLMAVSL-STNVVKLYSPV-TGQY--SGECKGHSSTVNQIS 87 (389)
Q Consensus 17 ~~~~~~i~~w~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~-~~~~--~~~~~~~~~~v~~i~ 87 (389)
...++.|.+|++.. .+..+...+....++++|++++|++++ .++.|.+|++. +++. ..... .......++
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~ 86 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS 86 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE
Confidence 35679999999852 334443356678899999999887765 47889999986 3432 22222 233567899
Q ss_pred EeCCCCCCEEEEEe-cCCeEEEEEccC-C---eEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceee-
Q 016457 88 FSGPSTPHVLHSCS-SDGTIRAWDTRS-F---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVA- 160 (389)
Q Consensus 88 ~~~~~~~~~l~s~~-~dg~i~iwd~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~- 160 (389)
|+|++ ++|++++ .++.|.+|++.+ + +.+..+.. .....+++++|++++++++.. ++.|.+||+.+...+.
T Consensus 87 ~~~~g--~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 87 TDHQG--RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred ECCCC--CEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 99999 6777665 488999999964 2 22333322 345677899999999987776 7999999998633221
Q ss_pred ----eeeecccCCeeEEEEecCCCCeEEEEeC-CCcEEEEecCCCCCCCccceeeecc------CCceeeEEEecCCCcE
Q 016457 161 ----CLEESHVEDVTQVHFVPNNQNKVVSASV-DGLICTFDTGGDINDDDLLESVINV------GTSVGKVGFFGETNKH 229 (389)
Q Consensus 161 ----~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~ 229 (389)
............++|+|+++ +++++.. ++.|.+||+.........+..+... ......+.++ +++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~-pdg~~ 241 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT-PDGRH 241 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC-CCCCE
Confidence 11101234567899999997 7766665 8999999997321111222222111 1123357888 67888
Q ss_pred EEEEec-CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe-cCCceEEEEEec
Q 016457 230 LWCLTH-IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG-TGAGTVGYFPVN 301 (389)
Q Consensus 230 l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g-~~dg~i~i~~~~ 301 (389)
++++.. ++.|.+|++........+..... -......+.++|+|+ +|+++ ..++.|.+|+++
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~---------~~~~p~~~~~~~dg~--~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQP---------TETQPRGFNIDHSGK--YLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEe---------ccccCCceEECCCCC--EEEEEEccCCcEEEEEEc
Confidence 888754 68999999865432222221110 012345789999999 55544 458999999885
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.9e-19 Score=146.01 Aligned_cols=257 Identities=16% Similarity=0.195 Sum_probs=187.3
Q ss_pred eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc------CCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCC
Q 016457 74 GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR------SFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGS 146 (389)
Q Consensus 74 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~------~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~ 146 (389)
+.+.+|.+.|++|.|+.++ ++|++|+.|..+++|++. +.+++.....| .+.|.|++|+..+..+++++.++
T Consensus 50 KD~~~H~GCiNAlqFS~N~--~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHND--RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhccccceeeeccCC--eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 4457899999999999998 899999999999999986 34566555443 58999999997778888888899
Q ss_pred eEEEEECcCCceeeeeeeccc---CCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEe
Q 016457 147 QIQFWDWRNKKQVACLEESHV---EDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFF 223 (389)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (389)
+|...|+++.+.+..+. |. +.|..+..+|.. +.|++.+.++.|.+||.+...+ ...+............+.|+
T Consensus 128 ~VI~HDiEt~qsi~V~~--~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~-~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVAN--ENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQN-PISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred eeEeeecccceeeeeec--ccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCC-CCceeeecCCCccceeeeec
Confidence 99999999999888776 44 489999999997 6999999999999999994321 11222233455667888999
Q ss_pred cCCCcEEEEEecCCcEEEEEcCCCc-eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 224 GETNKHLWCLTHIETLSIWDWKDGQ-NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 224 ~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
|....+|++.+..+-+.+||.+... .+..+.....+.. ....-.++.|+|.|.+ +.+--....-.+||+-+
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~------~~~~~M~~~~~~~G~Q--~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ------ENTEWMGSLWSPSGNQ--FMSIRRGKCPLYFDFIS 275 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcc------cchhhhheeeCCCCCe--ehhhhccCCCEEeeeec
Confidence 8888899999999999999988653 2222222211111 1133467889999985 34443444456778877
Q ss_pred CCccccCCCeEEEecccce-------eeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 303 GGAATIGPPEAVLVGGHTA-------VVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 303 ~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
.++ ..+...|.. .+.++ +|-.|-. ++||+.+=.|.+|++...
T Consensus 276 ~R~-------~V~k~D~N~~GY~N~~T~KS~---------~F~~D~~-v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 276 QRC-------FVLKSDHNPNGYCNIKTIKSM---------TFIDDYT-VATGSDHWGIHIWKLPRA 324 (609)
T ss_pred ccc-------eeEeccCCCCcceeeeeeeee---------eeeccee-eeccCcccceEEEecCCC
Confidence 554 333333432 22333 5554444 799999999999999865
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.6e-18 Score=150.87 Aligned_cols=300 Identities=13% Similarity=0.089 Sum_probs=204.4
Q ss_pred cceEEEeecCCCCeEEEEecCCeEEEEeCCC--c--eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457 39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT--G--QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF 114 (389)
Q Consensus 39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~--~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 114 (389)
-.++|.+++|.++++|+|..||.|.+|.--. + .....+.=|...|++++|+++| .+|+||+..|.+.+|.+.++
T Consensus 206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G--~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG--AYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC--ceEeecccceEEEEEeecCC
Confidence 3479999999999999999999999996322 1 2334556688999999999999 79999999999999999998
Q ss_pred eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee---e-------cccCCeeEEEEecCCCCeEE
Q 016457 115 HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE---E-------SHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~-------~~~~~v~~~~~~~~~~~~l~ 184 (389)
+ .+-+..-.++|..+.++|++....+...|+.|.+....+.....++. . ...+-.+.++++|.- +.++
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~-~~~v 361 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT-NSLV 361 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC-Ccee
Confidence 8 33344447899999999999999999999999999876554433332 1 123446778899955 4788
Q ss_pred EEeCCCcEEEEecCCCCCCCccceeee-------ccCCceeeEEEecCCCcEEEEEec--------C--CcEEEEEcCCC
Q 016457 185 SASVDGLICTFDTGGDINDDDLLESVI-------NVGTSVGKVGFFGETNKHLWCLTH--------I--ETLSIWDWKDG 247 (389)
Q Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~--------d--~~i~i~d~~~~ 247 (389)
-.+..|.|.+||+.+.....+...... .+...+++++.+ ..+.++++.-. | -.+++|-....
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~-~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARS-RFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhh-ccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 888999999999986532211111111 122345666666 45777777632 2 26778876544
Q ss_pred ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc----cCCCeEEEecccceee
Q 016457 248 QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT----IGPPEAVLVGGHTAVV 323 (389)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~----~~~~~~~~~~~h~~~v 323 (389)
..-..+...- ..+|...+...++.+..+....++++.||.++||-+...+... .+.+.. +-.-|..++
T Consensus 441 ~kt~~L~T~I-------~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~-i~sy~k~~i 512 (792)
T KOG1963|consen 441 SKTFILNTKI-------NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKA-IGSYHKTPI 512 (792)
T ss_pred cceeEEEEEE-------ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEee-eeccccCcc
Confidence 3322222110 0127777777666665443356899999999999986543300 001110 101133444
Q ss_pred eeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 324 RSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 324 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
... +||.||..|+ .+.|++|.+||....
T Consensus 513 ~a~---------~fs~dGslla-~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 513 TAL---------CFSQDGSLLA-VSFDDTITIWDYDTK 540 (792)
T ss_pred cch---------hhcCCCcEEE-EecCCEEEEecCCCh
Confidence 444 9999997655 556889999999983
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1e-18 Score=158.23 Aligned_cols=277 Identities=14% Similarity=0.178 Sum_probs=191.4
Q ss_pred CccccCCCCeEEEEecCc--eeeeeec----CcceEEEeecC--CCCeEEEEecCCeEEEEeCC-C----ceeeeeecC-
Q 016457 13 KSQSCDNVNSIKRFGLKN--SIQTNFG----DDYVFEIVPKN--DWSLMAVSLSTNVVKLYSPV-T----GQYSGECKG- 78 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~--~~~~~~~----~~~v~~~~~~~--~~~~l~~~~~d~~i~iw~~~-~----~~~~~~~~~- 78 (389)
..+.+.....|++||..+ .+..+.. ...|+.+.+-. |..++++|+.||.|+||+-- + .+.+..+.+
T Consensus 1078 ~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~L 1157 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSL 1157 (1387)
T ss_pred eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccc
Confidence 445555567899999753 4443432 67799998865 44689999999999999632 2 233333322
Q ss_pred ------CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCC-CCeEEEeecCCeEEE
Q 016457 79 ------HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGS-TDYLLAAGCGSQIQF 150 (389)
Q Consensus 79 ------~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~d~~i~i 150 (389)
..+.=.-+.|.... .+|+++|.-..|+|||......+..+... ...|+++.-+.. ++.+++|..||.|++
T Consensus 1158 s~~~~~~r~~~~v~dWqQ~~--G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRv 1235 (1387)
T KOG1517|consen 1158 SDQLPGARGTGLVVDWQQQS--GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRV 1235 (1387)
T ss_pred cccCccCCCCCeeeehhhhC--CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEE
Confidence 11111335676555 46666666789999999988887777654 566777776544 456666667999999
Q ss_pred EECcCCc---eeeeeeecccCC--eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc---CCceeeEEE
Q 016457 151 WDWRNKK---QVACLEESHVED--VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV---GTSVGKVGF 222 (389)
Q Consensus 151 wd~~~~~---~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~i~~~~~ 222 (389)
||.|... .+...+ .|... |..+.+.+.|-..|++|+.+|.|++||+|... ......+..| ++..+++..
T Consensus 1236 yD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~--~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1236 YDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS--KETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred eecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc--ccccceeeeccccCccceeeee
Confidence 9998653 344444 67776 99999999885469999999999999999631 1122222222 345889999
Q ss_pred ecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 223 FGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 223 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
+ +....+++|+. +.|+||++. |+.+..+....... -.....+.+++|+|..- ++++|+.|..|.||....
T Consensus 1313 H-~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~-----~q~~gs~scL~FHP~~~--llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1313 H-EHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFM-----GQRIGSVSCLAFHPHRL--LLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred c-cCCCeeeecCc-ceEEEEecC-hhhhcccccCcccc-----cCcCCCcceeeecchhH--hhhhccCCceEEEeecCC
Confidence 8 67778888888 999999986 55554444221111 11346679999999755 789999999999998776
Q ss_pred CC
Q 016457 303 GG 304 (389)
Q Consensus 303 ~~ 304 (389)
.+
T Consensus 1383 ~~ 1384 (1387)
T KOG1517|consen 1383 PR 1384 (1387)
T ss_pred cC
Confidence 54
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=152.78 Aligned_cols=263 Identities=16% Similarity=0.133 Sum_probs=189.0
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE-eC-----CCCCCEEEEEecCCeEEEEEc
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF-SG-----PSTPHVLHSCSSDGTIRAWDT 111 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~-~~-----~~~~~~l~s~~~dg~i~iwd~ 111 (389)
...|.|+.|+.....+.+++ |..+.+|+--+......+.-...-|....+ -+ .+..+.++.++.||.+.|.+
T Consensus 14 ~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~- 91 (737)
T KOG1524|consen 14 SEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN- 91 (737)
T ss_pred ceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-
Confidence 44567888888776666555 666666643333222222211121111111 11 11125788899999999987
Q ss_pred cCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457 112 RSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL 191 (389)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 191 (389)
+.++....+..|.+.+.+-.|+|+|.-|+++|.||.|++|. ++|-...++. ....+|.|++|.|+..+.+.+.+ +.
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q~~~~v~c~~W~p~S~~vl~c~g--~h 167 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-QNEESIRCARWAPNSNSIVFCQG--GH 167 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh-hcCceeEEEEECCCCCceEEecC--Ce
Confidence 56788888899999999999999999999999999999998 6676666665 56788999999999875666554 55
Q ss_pred EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCc
Q 016457 192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDY 271 (389)
Q Consensus 192 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (389)
+.|=.+. ....+.....|.+-|.++.|+ +..+++++|+.|-..++||.. |..+..-.. |+.+
T Consensus 168 ~~IKpL~----~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~------------~ey~ 229 (737)
T KOG1524|consen 168 ISIKPLA----ANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKIWDAQ-GANLFTSAA------------EEYA 229 (737)
T ss_pred EEEeecc----cccceeEEeccCcEEEEeecC-ccccceeecCCceeEEeeccc-CcccccCCh------------hccc
Confidence 6665555 335577888999999999999 677899999999999999965 555544443 7799
Q ss_pred eeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCC
Q 016457 272 FVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDG 351 (389)
Q Consensus 272 i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg 351 (389)
|++++|.|+ . .++.|+.+ +++ +.....+.|..+ +||+||..++.|...|
T Consensus 230 ITSva~npd-~--~~~v~S~n-t~R------------------~~~p~~GSifnl---------sWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 230 ITSVAFNPE-K--DYLLWSYN-TAR------------------FSSPRVGSIFNL---------SWSADGTQATCGTSTG 278 (737)
T ss_pred eeeeeeccc-c--ceeeeeee-eee------------------ecCCCccceEEE---------EEcCCCceeeccccCc
Confidence 999999998 3 33444332 222 223455677888 9999999999999888
Q ss_pred eEEE
Q 016457 352 RLCC 355 (389)
Q Consensus 352 ~v~i 355 (389)
.|.+
T Consensus 279 ~v~~ 282 (737)
T KOG1524|consen 279 QLIV 282 (737)
T ss_pred eEEE
Confidence 8755
No 196
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=3e-19 Score=153.46 Aligned_cols=228 Identities=13% Similarity=0.122 Sum_probs=168.8
Q ss_pred cCCCCeEEEEecCc-------eeeeeecCcceEEEeecC-CCCeEEEEecCCeEEEEeCCCc-------eeeeeecCCCC
Q 016457 17 CDNVNSIKRFGLKN-------SIQTNFGDDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTG-------QYSGECKGHSS 81 (389)
Q Consensus 17 ~~~~~~i~~w~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~ 81 (389)
.+.-|.|-+|++.+ .+..+.....|+.+.|+| |...||++++||.|+||.+..+ .+...+..|.+
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 34568899999864 344455578899999999 6689999999999999998654 34566788999
Q ss_pred cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce-ee
Q 016457 82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ-VA 160 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~ 160 (389)
.|+.+.|+|-.. +.|++++.|-+|++||+.+++....+.+|.+.|..++|+|+|..+++.+.||+|++|..++++. ++
T Consensus 679 KI~slRfHPLAa-dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~ 757 (1012)
T KOG1445|consen 679 KITSLRFHPLAA-DVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY 757 (1012)
T ss_pred eEEEEEecchhh-hHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence 999999999775 7999999999999999999999999999999999999999999999999999999999987653 33
Q ss_pred eeeecccCCeeEEEEecCCCCeEEEEeCC----CcEEEEecCCCCCCCccceee-eccCCceeeEEEecCCCcEEEEEec
Q 016457 161 CLEESHVEDVTQVHFVPNNQNKVVSASVD----GLICTFDTGGDINDDDLLESV-INVGTSVGKVGFFGETNKHLWCLTH 235 (389)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (389)
.-...-...--.|.|--+|. ++++.+.| +.|.+||..+-. ..++... ......+.--.+.++.+-++++|-.
T Consensus 758 Eg~gpvgtRgARi~wacdgr-~viv~Gfdk~SeRQv~~Y~Aq~l~--~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKG 834 (1012)
T KOG1445|consen 758 EGKGPVGTRGARILWACDGR-IVIVVGFDKSSERQVQMYDAQTLD--LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKG 834 (1012)
T ss_pred cCCCCccCcceeEEEEecCc-EEEEecccccchhhhhhhhhhhcc--CCcceeeeecccCccccccccCCCceEEEecCC
Confidence 33211223345677888886 65555544 568888877321 0111111 1111111111233345567888888
Q ss_pred CCcEEEEEcCCCc
Q 016457 236 IETLSIWDWKDGQ 248 (389)
Q Consensus 236 d~~i~i~d~~~~~ 248 (389)
|..|.+|.+-...
T Consensus 835 D~~v~~yEv~~es 847 (1012)
T KOG1445|consen 835 DRFVNMYEVIYES 847 (1012)
T ss_pred CceEEEEEecCCC
Confidence 9999999986543
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=2.2e-17 Score=133.13 Aligned_cols=237 Identities=14% Similarity=0.181 Sum_probs=176.8
Q ss_pred CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC--CeEEEEECcCCc
Q 016457 80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG--SQIQFWDWRNKK 157 (389)
Q Consensus 80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~ 157 (389)
...+..+.|+.+. ..|..|+.|| .++|+................|..+-|+ ...++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~--~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDS--TLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred Ccceeeeeeccce--eEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc
Confidence 3457777798887 6888888888 6888877554433333334455566665 4555555553 469999999888
Q ss_pred eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee---ccCCceeeEEEecCCCcEEEEEe
Q 016457 158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI---NVGTSVGKVGFFGETNKHLWCLT 234 (389)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~ 234 (389)
.+-.+. ...+|.++.++.+ .|+++=.+ .|+|||++.. +.+..+. .+...+.+++++ .++.+++.-+
T Consensus 80 ~ICe~~--fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~M----klLhTI~t~~~n~~gl~AlS~n-~~n~ylAyp~ 148 (391)
T KOG2110|consen 80 TICEIF--FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDM----KLLHTIETTPPNPKGLCALSPN-NANCYLAYPG 148 (391)
T ss_pred eEEEEe--cCCceEEEEEccc---eEEEEEcc-cEEEEecccc----eeehhhhccCCCccceEeeccC-CCCceEEecC
Confidence 887776 6788999999875 45555444 4999999943 3333332 344455666655 4445666432
Q ss_pred --cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce-EEEEEeccCCccccCCC
Q 016457 235 --HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT-VGYFPVNYGGAATIGPP 311 (389)
Q Consensus 235 --~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~-i~i~~~~~~~~~~~~~~ 311 (389)
..|.|.+||+.+.+.+..+.. |.+.+-+++|+++|. +||++++.|+ ||||.+.+++.
T Consensus 149 s~t~GdV~l~d~~nl~~v~~I~a------------H~~~lAalafs~~G~--llATASeKGTVIRVf~v~~G~k------ 208 (391)
T KOG2110|consen 149 STTSGDVVLFDTINLQPVNTINA------------HKGPLAALAFSPDGT--LLATASEKGTVIRVFSVPEGQK------ 208 (391)
T ss_pred CCCCceEEEEEcccceeeeEEEe------------cCCceeEEEECCCCC--EEEEeccCceEEEEEEcCCccE------
Confidence 358999999999999999987 779999999999999 9999999986 68999999887
Q ss_pred eEEEecccc-eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 312 EAVLVGGHT-AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 312 ~~~~~~~h~-~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
+.++.+|-. ..|.++ +|++++++|++.|..++|.+++++..
T Consensus 209 l~eFRRG~~~~~IySL---------~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 209 LYEFRRGTYPVSIYSL---------SFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eeeeeCCceeeEEEEE---------EECCCCCeEEEecCCCeEEEEEeccc
Confidence 788876654 466777 99999999999999999999999976
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.7e-17 Score=145.73 Aligned_cols=290 Identities=16% Similarity=0.158 Sum_probs=204.5
Q ss_pred EEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC-CEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457 43 EIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP-HVLHSCSSDGTIRAWDTRSFHEVWSVT 121 (389)
Q Consensus 43 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~ 121 (389)
.-.|++|+++++... +..|.||...+|+++..+.+|..++..+.+.|.... .++++++.||.|++||...+..+.++.
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 345899998888776 678999999999999999999999999999987743 467799999999999999887776665
Q ss_pred cCCCCeEE-----------------------------------------------------------EEEeCCCCeEEEe
Q 016457 122 AGSQEIFC-----------------------------------------------------------FSFGGSTDYLLAA 142 (389)
Q Consensus 122 ~~~~~v~~-----------------------------------------------------------~~~~~~~~~l~~~ 142 (389)
.+ .++.. +.++ .+..+...
T Consensus 100 ~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~-~~ge~~~i 177 (792)
T KOG1963|consen 100 NN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN-NSGEFKGI 177 (792)
T ss_pred cC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc-CCceEEEE
Confidence 43 11111 2222 11222222
Q ss_pred ecCCeEEEEECcCCcee---eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceee
Q 016457 143 GCGSQIQFWDWRNKKQV---ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGK 219 (389)
Q Consensus 143 ~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 219 (389)
..+..+.+|+..+.... ......|...+++.+++|++. ++++|..||.|.+|.--...........+.=|...|.+
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 33455666666553311 111124677789999999996 99999999999999766422233444555568889999
Q ss_pred EEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 220 VGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 220 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
++|+ .+|.+|++|+..+.+.+|.+.+++ .+-++. -..+|..+.++||++ +.+....|..|.+..
T Consensus 257 L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR------------Lgs~I~~i~vS~ds~--~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 257 LSFS-SDGAYLLSGGREGVLVLWQLETGK-KQFLPR------------LGSPILHIVVSPDSD--LYSLVLEDNQIHLIK 320 (792)
T ss_pred eEEe-cCCceEeecccceEEEEEeecCCC-cccccc------------cCCeeEEEEEcCCCC--eEEEEecCceEEEEe
Confidence 9999 889999999999999999999987 333332 338899999999999 556666799999998
Q ss_pred eccCCccc----cCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 300 VNYGGAAT----IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 300 ~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
..+..... +..+....+....+-.+.+ +++|.-+.++-.+.-|.|.+|++-.-
T Consensus 321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~---------~idpr~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGV---------SIDPRTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred ccchhhhhhccCccCCCccccccccccceeE---------EEcCCCCceeecCCCceEEEEecccc
Confidence 76544310 0011011111122333444 66776666777888999999998754
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=9.8e-20 Score=150.63 Aligned_cols=232 Identities=11% Similarity=0.111 Sum_probs=197.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
.-.-+.+.++.+|+.|+.|+..|.|-.+|..++++...+.. ...|.++.|..+. +++|++ ....+.||| ..|..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHne--q~~AVA-QK~y~yvYD-~~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNE--QFFAVA-QKKYVYVYD-NNGTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcch--HHHHhh-hhceEEEec-CCCcEE
Confidence 34556888999999999999999999999999999888874 5689999999887 577666 456799999 568889
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (389)
+.++.+ ..|..+.|.|..-.|++++..|.++.-|+.+|+.+..+. ...+.+..|.-+|-+. .+-+|...|+|.+|..
T Consensus 204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSP 280 (545)
T ss_pred eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCCccc-eEEEcCCCceEEecCC
Confidence 999886 789999999877777777779999999999999999998 6678899999999986 9999999999999999
Q ss_pred CCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecc
Q 016457 198 GGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHY 277 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 277 (389)
.+ ..++..+..|.++|.++++. ++|.++++.+.|..++|||+++...+.++.. + .+...+++
T Consensus 281 ~s----kePLvKiLcH~g~V~siAv~-~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p------------~~a~~ls~ 342 (545)
T KOG1272|consen 281 NS----KEPLVKILCHRGPVSSIAVD-RGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-P------------HPASNLSL 342 (545)
T ss_pred CC----cchHHHHHhcCCCcceEEEC-CCCcEEeecccccceeEeeeccccccceeec-C------------CCcccccc
Confidence 84 46788888999999999999 8999999999999999999999887777664 1 45667888
Q ss_pred cCCCCeEEEEEecCCceEEEEE
Q 016457 278 PGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 278 ~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
|..| +||.+ ....+.||.
T Consensus 343 Sqkg---lLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 343 SQKG---LLALS-YGDHVQIWK 360 (545)
T ss_pred cccc---ceeee-cCCeeeeeh
Confidence 8765 44444 556799994
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.7e-16 Score=121.01 Aligned_cols=255 Identities=10% Similarity=0.075 Sum_probs=179.7
Q ss_pred CccccCCCCeEEEEecCc------------eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee------e
Q 016457 13 KSQSCDNVNSIKRFGLKN------------SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY------S 73 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~------------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~------~ 73 (389)
..+.++.+|+|-+..++. .+...++ +++|+.++|.. .+|++|+ ||.|+=|....... +
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~E~~es~~~K~l 100 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWNEEEESLATKRL 100 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeeehhhhhhccchhh
Confidence 456678889999988742 3334445 88999999983 4777777 69999997653211 1
Q ss_pred eee--cCCC-----CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC
Q 016457 74 GEC--KGHS-----STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS 146 (389)
Q Consensus 74 ~~~--~~~~-----~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 146 (389)
... ..|. -.|+++-..|.. +-++.++.|+.+.-||+++|+..+.+++|.+.|.++.-....+.+++++.||
T Consensus 101 we~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDG 178 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDG 178 (325)
T ss_pred hhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCc
Confidence 111 1122 358899888877 5677777899999999999999999999999999999866889999999999
Q ss_pred eEEEEECcCCceeeeeee--------cc-cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCce
Q 016457 147 QIQFWDWRNKKQVACLEE--------SH-VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSV 217 (389)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~--------~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i 217 (389)
++++||.++++.+..+.. +| ...|-+++.+.+ ++++|+ ...+.+|.+++.. ..........+
T Consensus 179 tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwhLrsse-----~t~vfpipa~v 249 (325)
T KOG0649|consen 179 TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWHLRSSE-----STCVFPIPARV 249 (325)
T ss_pred cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CCceeEEeccCCC-----ceEEEecccce
Confidence 999999999998887751 11 233566665543 777765 5679999999542 33444566778
Q ss_pred eeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEE
Q 016457 218 GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGY 297 (389)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i 297 (389)
..+.|. .+ .+++++..+.+.-|.+. |......... ...+.+..|+...-+ +|-.++....+.|
T Consensus 250 ~~v~F~-~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~------------s~~c~s~s~~~~p~k-~~s~ag~s~~~~i 312 (325)
T KOG0649|consen 250 HLVDFV-DD--CVLIGGEGNHVQSYTLN-GVLQANIPVE------------STACYSASWQTSPIK-FISIAGFSNKLHI 312 (325)
T ss_pred eEeeee-cc--eEEEeccccceeeeeec-cEEEEeccCC------------ccceeeecccCCceE-EEEecccceeeee
Confidence 888886 33 78888888889988874 4444444331 133444444443333 4555556666666
Q ss_pred E
Q 016457 298 F 298 (389)
Q Consensus 298 ~ 298 (389)
+
T Consensus 313 ~ 313 (325)
T KOG0649|consen 313 L 313 (325)
T ss_pred e
Confidence 5
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=9.7e-19 Score=147.40 Aligned_cols=208 Identities=15% Similarity=0.199 Sum_probs=167.8
Q ss_pred CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEE
Q 016457 51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCF 130 (389)
Q Consensus 51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 130 (389)
..|+.++.||.+.|.+ +.++....+.+|.+.+.+-.|+|+| .-|++++.||.|++|. ++|-...++.....+|.|+
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 5788888999999998 5588888899999999999999999 6899999999999998 5565555555567899999
Q ss_pred EEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee
Q 016457 131 SFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV 210 (389)
Q Consensus 131 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 210 (389)
+|.|+.+.++.+.. +.+.|=-+.....+...+ +|.+-|.++.|++.. +++++|++|-..++||-.. ..+...
T Consensus 152 ~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G-----~~Lf~S 223 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG-GHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQG-----ANLFTS 223 (737)
T ss_pred EECCCCCceEEecC-CeEEEeecccccceeEEe-ccCcEEEEeecCccc-cceeecCCceeEEeecccC-----cccccC
Confidence 99999888777655 677776777666777777 899999999999998 4999999999999999984 345666
Q ss_pred eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec
Q 016457 211 INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT 290 (389)
Q Consensus 211 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~ 290 (389)
..|+.+|++++|. |+ ..++.++. ++++ +..+ ..+.|..++|++||. -+++|.
T Consensus 224 ~~~ey~ITSva~n-pd-~~~~v~S~-nt~R------------~~~p-----------~~GSifnlsWS~DGT--Q~a~gt 275 (737)
T KOG1524|consen 224 AAEEYAITSVAFN-PE-KDYLLWSY-NTAR------------FSSP-----------RVGSIFNLSWSADGT--QATCGT 275 (737)
T ss_pred Chhccceeeeeec-cc-cceeeeee-eeee------------ecCC-----------CccceEEEEEcCCCc--eeeccc
Confidence 6789999999999 55 45555543 2333 2221 447899999999999 668888
Q ss_pred CCceEEEE
Q 016457 291 GAGTVGYF 298 (389)
Q Consensus 291 ~dg~i~i~ 298 (389)
..|.+.+=
T Consensus 276 ~~G~v~~A 283 (737)
T KOG1524|consen 276 STGQLIVA 283 (737)
T ss_pred cCceEEEe
Confidence 88876654
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=2.5e-16 Score=124.66 Aligned_cols=296 Identities=14% Similarity=0.111 Sum_probs=197.1
Q ss_pred ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCC--cEEEEEEeCCCCCCEEE-EEecC------CeEEEEE
Q 016457 40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS--TVNQISFSGPSTPHVLH-SCSSD------GTIRAWD 110 (389)
Q Consensus 40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~l~-s~~~d------g~i~iwd 110 (389)
...+++|+.|...+++|.++| .+||+.+.-+....-+.+.+ .+..+-|-. ++|+ .||.+ +.|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~----N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS----NYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh----ceEEEecCCCCCCCCCceEEEEe
Confidence 345699999999999998666 89999875433222222222 233333432 2444 44433 4699999
Q ss_pred ccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc-CCceeeeeee-cccCCeeEEEEecCCCCeEEE-Ee
Q 016457 111 TRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR-NKKQVACLEE-SHVEDVTQVHFVPNNQNKVVS-AS 187 (389)
Q Consensus 111 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~-~~ 187 (389)
-...+++.++.. ..+|.++.+. ..++++. ..+.|++|... +.+.+..+.. .......+++-+.+.. +|+. |-
T Consensus 82 D~k~~~i~el~f-~~~I~~V~l~--r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~-~LafPg~ 156 (346)
T KOG2111|consen 82 DLKERCIIELSF-NSEIKAVKLR--RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS-LLAFPGF 156 (346)
T ss_pred cccCcEEEEEEe-ccceeeEEEc--CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce-EEEcCCC
Confidence 777788888876 5899999996 3444444 45899999987 4455555541 1233344444333332 4444 44
Q ss_pred CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC-cEEEEEcCCCceeEEeecccccccCCccC
Q 016457 188 VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE-TLSIWDWKDGQNVASFENARSLASDSWTL 266 (389)
Q Consensus 188 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 266 (389)
.-|.|.|-|+.... ......+..|.+.|.+++.+ .+|..+++++..| -|+|||..++..+..+..+.
T Consensus 157 k~GqvQi~dL~~~~--~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~--------- 224 (346)
T KOG2111|consen 157 KTGQVQIVDLASTK--PNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV--------- 224 (346)
T ss_pred ccceEEEEEhhhcC--cCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC---------
Confidence 56899999998542 11356778999999999999 8899999999999 47999999999999988654
Q ss_pred CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcccc----CCCeE-EEecccceeeeecc----CCCcccCCCC
Q 016457 267 DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI----GPPEA-VLVGGHTAVVRSVL----PMPSVQGRPA 337 (389)
Q Consensus 267 ~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~----~~~~~-~~~~~h~~~v~~~~----~~~~~~~~~~ 337 (389)
....|.+++|+|+.. +|++.|..|+|+||.+........ ..+.. .++ .--+..++++ +.+....++|
T Consensus 225 -d~A~iy~iaFSp~~s--~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lp-ky~~S~wS~~~f~l~~~~~~~~~f 300 (346)
T KOG2111|consen 225 -DRADIYCIAFSPNSS--WLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLP-KYFSSEWSFAKFQLPQGTQCIIAF 300 (346)
T ss_pred -chheEEEEEeCCCcc--EEEEEcCCCeEEEEEeecCCCCccccccccccccccc-hhcccceeEEEEEccCCCcEEEEe
Confidence 447899999999999 999999999999999876442110 00000 111 1111123332 5566666688
Q ss_pred CCCceeEEEecCCCeEEEEeccCC
Q 016457 338 QSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 338 s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
-.+..-++..+.||.-+-+.++..
T Consensus 301 g~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 301 GSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred cCCCCeEEEEEeCCcEEEEEeccc
Confidence 887555666667888765555543
No 203
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.80 E-value=5.2e-16 Score=133.98 Aligned_cols=309 Identities=13% Similarity=0.053 Sum_probs=192.0
Q ss_pred CCCCeEEEEecC--ceeeeeecCcce-EEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457 18 DNVNSIKRFGLK--NSIQTNFGDDYV-FEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP 94 (389)
Q Consensus 18 ~~~~~i~~w~~~--~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 94 (389)
..++.|.+.|.. +.+..+.....+ ..+.|+|||+++++++.||.|.++|+.+++.+.+++.- .....+++++++
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG-- 89 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDG-- 89 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TT--
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCC--
Confidence 457899999985 466777653333 45789999999999999999999999999999998854 456789999999
Q ss_pred CEEEEEe-cCCeEEEEEccCCeEEEEEEcC-------CCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeec
Q 016457 95 HVLHSCS-SDGTIRAWDTRSFHEVWSVTAG-------SQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEES 165 (389)
Q Consensus 95 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~ 165 (389)
++++++. ..+.+.++|.++.+.++.+... ...+..+..+|....+++.-. .+.|.+.|....+.+..-...
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~ 169 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK 169 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE
T ss_pred CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec
Confidence 6777654 7899999999999999888753 346778888888887776666 489999998766543221113
Q ss_pred ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee----ccCCceeeE-------EEec-CCCcEEEEE
Q 016457 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI----NVGTSVGKV-------GFFG-ETNKHLWCL 233 (389)
Q Consensus 166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~i~~~-------~~~~-~~~~~l~~~ 233 (389)
.........|+|+++.++++...++.|-++|..++. ....+. .|..+...+ .|.. ..+...++.
T Consensus 170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k----~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ 245 (369)
T PF02239_consen 170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK----LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL 245 (369)
T ss_dssp --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE----EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred ccccccccccCcccceeeecccccceeEEEeeccce----EEEEeeccccccccccccccCCCcceEEeeccccceeccc
Confidence 456678899999997445556677899999988542 121111 122222211 1210 112222233
Q ss_pred ecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe----cCCceEEEEEeccCCccccC
Q 016457 234 THIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG----TGAGTVGYFPVNYGGAATIG 309 (389)
Q Consensus 234 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g----~~dg~i~i~~~~~~~~~~~~ 309 (389)
-....+.+||..+.+.++++... ... .-+..+|+++ ++... ...+.|.++|..+.+.
T Consensus 246 ig~~~v~v~d~~~wkvv~~I~~~------------G~g-lFi~thP~s~--~vwvd~~~~~~~~~v~viD~~tl~~---- 306 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWKVVKTIPTQ------------GGG-LFIKTHPDSR--YVWVDTFLNPDADTVQVIDKKTLKV---- 306 (369)
T ss_dssp EE--TTT-STTTBTSEEEEEE-S------------SSS---EE--TT-S--EEEEE-TT-SSHT-EEEEECCGTEE----
T ss_pred ccCCccccchhhcCeEEEEEECC------------CCc-ceeecCCCCc--cEEeeccCCCCCceEEEEECcCcce----
Confidence 33345667888888999888852 244 7788899999 55554 4568999999998754
Q ss_pred CCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec--CCCeEEEEeccCCcc
Q 016457 310 PPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG--EDGRLCCWLSDDSSE 363 (389)
Q Consensus 310 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~v~iW~~~~~~~ 363 (389)
+..+..+-...+..+ .|++||+++..+. .+|.|.+||..+..+
T Consensus 307 --~~~i~~~~~~~~~h~---------ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 307 --VKTITPGPGKRVVHM---------EFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp --EE-HHHHHT--EEEE---------EE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred --eEEEeccCCCcEecc---------EECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 344432222346677 9999999765554 444799999887643
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.3e-18 Score=146.99 Aligned_cols=228 Identities=19% Similarity=0.257 Sum_probs=162.8
Q ss_pred eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE-cCCCCeEEEEEeCC--CCeEEEeecCCeE
Q 016457 72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT-AGSQEIFCFSFGGS--TDYLLAAGCGSQI 148 (389)
Q Consensus 72 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i 148 (389)
..+.+.||++.|++++|+.+| .+|++|+.|-.+.|||.-..++++.+. +|...|.++.|-|. +..+++++.|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG--~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADG--ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCC--CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 345678999999999999999 799999999999999999888888775 67999999999884 4456666779999
Q ss_pred EEEECcC----------CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC--CC----ccceeeec
Q 016457 149 QFWDWRN----------KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN--DD----DLLESVIN 212 (389)
Q Consensus 149 ~iwd~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~----~~~~~~~~ 212 (389)
+++|+.. .+....+. .|...|..|+-.|++++.+.++++||+++-||++.... .. ..+..+..
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 9999984 22344455 78999999999999999999999999999999994210 00 00111111
Q ss_pred cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC-c-----------------eeEEeecccccccCCccCC-CCCcee
Q 016457 213 VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG-Q-----------------NVASFENARSLASDSWTLD-DVDYFV 273 (389)
Q Consensus 213 ~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~-----------------~~~~~~~~~~~~~~~~~~~-~~~~i~ 273 (389)
.--...++.++|.+..+|++|+.|-..++||.+.. + ++.-|..... ........ ....++
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl-kn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL-KNSQGNLDRYITCCT 277 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc-cCcccccccceeeeE
Confidence 12345788899888899999999999999995311 0 1222221110 00000000 112356
Q ss_pred eecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
-+.|+|+|.++ |++-+ .-.|++||+..++-
T Consensus 278 ~vtfnpNGtEl-Lvs~~-gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 278 YVTFNPNGTEL-LVSWG-GEHVYLFDVNEDKS 307 (758)
T ss_pred EEEECCCCcEE-EEeeC-CeEEEEEeecCCCC
Confidence 68899999975 44433 33699999987764
No 205
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=3.1e-18 Score=131.87 Aligned_cols=264 Identities=13% Similarity=0.207 Sum_probs=180.4
Q ss_pred CccccCCCCeEEEEecCc--eeeeee--cCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457 13 KSQSCDNVNSIKRFGLKN--SIQTNF--GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF 88 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~ 88 (389)
+.-++...|.|++|.+.. ....++ +...|+.+.--|+ ..+.+-+.|+.+.+|++.-+..+. .|.-.++++.|
T Consensus 27 rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgF 102 (323)
T KOG0322|consen 27 RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGF 102 (323)
T ss_pred hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEE---Eeeeecccccc
Confidence 355677889999999863 344444 3788999998887 477888899999999987654332 24455666666
Q ss_pred eCCCCCCEEEEEecCC-eEEEE-----------EccCCeEEEEEE----cCCCCeEEEEEeC-CC-CeEEEee-cCCeEE
Q 016457 89 SGPSTPHVLHSCSSDG-TIRAW-----------DTRSFHEVWSVT----AGSQEIFCFSFGG-ST-DYLLAAG-CGSQIQ 149 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg-~i~iw-----------d~~~~~~~~~~~----~~~~~v~~~~~~~-~~-~~l~~~~-~d~~i~ 149 (389)
++.. +...+... .+-.+ |......+.... ...+.+.|..+.. .+ ..++++| .+|.+.
T Consensus 103 CrfS----l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv 178 (323)
T KOG0322|consen 103 CRFS----LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVV 178 (323)
T ss_pred ccce----eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEE
Confidence 6532 22111111 11111 111111111111 1135566666432 22 2344444 499999
Q ss_pred EEECcCCceeeeee---------ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeE
Q 016457 150 FWDWRNKKQVACLE---------ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKV 220 (389)
Q Consensus 150 iwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 220 (389)
+||+.++..+..+. ..|..+|.++.+.+.-. .=++|+.+..+..|++.-............-.+..|..+
T Consensus 179 ~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gv 257 (323)
T KOG0322|consen 179 IWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGV 257 (323)
T ss_pred EEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccceEEecCCCccce
Confidence 99999874433332 26889999999997763 677888888999999874322222222333344567788
Q ss_pred EEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457 221 GFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV 300 (389)
Q Consensus 221 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 300 (389)
..- ++++.+++++.|+.|++|+.++.+++..+.. |...|.+++|+|+.+ ++++++.|++|.+|++
T Consensus 258 rIR-pD~KIlATAGWD~RiRVyswrtl~pLAVLky------------Hsagvn~vAfspd~~--lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 258 RIR-PDGKILATAGWDHRIRVYSWRTLNPLAVLKY------------HSAGVNAVAFSPDCE--LMAAASKDARISLWKL 322 (323)
T ss_pred EEc-cCCcEEeecccCCcEEEEEeccCCchhhhhh------------hhcceeEEEeCCCCc--hhhhccCCceEEeeec
Confidence 887 8899999999999999999999999999987 679999999999977 8899999999999986
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.1e-18 Score=141.27 Aligned_cols=202 Identities=17% Similarity=0.202 Sum_probs=159.5
Q ss_pred EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee
Q 016457 84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE 163 (389)
Q Consensus 84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 163 (389)
..++|++++ ..+++|+.||++|||+..+...+.....|...|.++.|+|++..|++.+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~g--s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDG--SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCC--CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 678999998 699999999999999988888888888889999999999999999999998 99999999997777665
Q ss_pred -ecccCCeeEEEEecCC--CCeEE--EEeCCCcEEEEecCCCCCC-CccceeeeccCCceeeEEEecCCCcEEEEEecCC
Q 016457 164 -ESHVEDVTQVHFVPNN--QNKVV--SASVDGLICTFDTGGDIND-DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE 237 (389)
Q Consensus 164 -~~~~~~v~~~~~~~~~--~~~l~--~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 237 (389)
.........+.|+.++ +.+++ ....-+.|+.||+...... .-...+.......|.+++.+ ++|++++.|+.||
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-DDGKFLALGTMDG 303 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-CCCcEEEEeccCC
Confidence 2233456677787665 11222 2334566777777643211 11222333345689999999 8999999999999
Q ss_pred cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 238 TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 238 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
.|-|++..+.+.++.++.. |...|+.+.|+|+.+ ++++-+.+..+.+..+.-
T Consensus 304 sVai~~~~~lq~~~~vk~a-----------H~~~VT~ltF~Pdsr--~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEA-----------HLGFVTGLTFSPDSR--YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEEeceeeeeEeehhh-----------heeeeeeEEEcCCcC--cccccccCCceeEEEEee
Confidence 9999999888877766653 889999999999998 788888999999988765
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=5.4e-17 Score=149.40 Aligned_cols=275 Identities=18% Similarity=0.161 Sum_probs=186.3
Q ss_pred EeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-------eEEEEEEcCCCCeEEEEEeCCCC
Q 016457 65 YSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-------HEVWSVTAGSQEIFCFSFGGSTD 137 (389)
Q Consensus 65 w~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~ 137 (389)
|+++ |..+..+..|...|..++.++... .+++||+.||+|++||.+.- +...++......+.++.+.+.+.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~-s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHT-SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCC-ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 5543 788888888999999999887653 69999999999999998632 23334443468899999998999
Q ss_pred eEEEeecCCeEEEEECcCCce-------eeeeee-cccCCeeEEEEecCCCC-eEEEEeCCCcEEEEecCCCCCCCccce
Q 016457 138 YLLAAGCGSQIQFWDWRNKKQ-------VACLEE-SHVEDVTQVHFVPNNQN-KVVSASVDGLICTFDTGGDINDDDLLE 208 (389)
Q Consensus 138 ~l~~~~~d~~i~iwd~~~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~ 208 (389)
.+++++.||.|.+.++..... ...... ..+.-+..-+|...... .++.+..-+.|..||+++... ....
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~--~w~l 1189 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD--AWRL 1189 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh--HHhh
Confidence 999999999999999875211 111111 11222333344443334 788889999999999995421 1122
Q ss_pred eeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCC--eEEE
Q 016457 209 SVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGE--NLWV 286 (389)
Q Consensus 209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l 286 (389)
+.....+.|++++.+ +.+.++++|+..|.+.+||++=+.++..... ++..++..+..+|-.+ ...+
T Consensus 1190 k~~~~hG~vTSi~id-p~~~WlviGts~G~l~lWDLRF~~~i~sw~~-----------P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVID-PWCNWLVIGTSRGQLVLWDLRFRVPILSWEH-----------PARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred hcCccccceeEEEec-CCceEEEEecCCceEEEEEeecCceeecccC-----------cccCCcceEEeeccCCCCceEE
Confidence 233345789999999 6778999999999999999987766665543 3456777777666433 3234
Q ss_pred EEec-CCceEEEEEeccCCccccCCCeEEEecccceeeeecc-CC-----Cc---ccCCCCCCCceeEEEecCCCeEEEE
Q 016457 287 IGGT-GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVL-PM-----PS---VQGRPAQSHGIFGWTGGEDGRLCCW 356 (389)
Q Consensus 287 ~~g~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~-----~~---~~~~~~s~~~~~l~s~~~dg~v~iW 356 (389)
.+|+ ..+.|.+|++.++.. ...+..+...+...-. |. +. ...+++...+.++.+|+.|..||.|
T Consensus 1258 s~~~~~~nevs~wn~~~g~~------~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~w 1331 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGLR------QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKW 1331 (1431)
T ss_pred EecccCCCceeeeecccCcc------eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeec
Confidence 4444 578999999998864 2222211111111111 21 11 1223555667789999999999999
Q ss_pred eccCC
Q 016457 357 LSDDS 361 (389)
Q Consensus 357 ~~~~~ 361 (389)
|...+
T Consensus 1332 D~~~p 1336 (1431)
T KOG1240|consen 1332 DPTRP 1336 (1431)
T ss_pred cCCCc
Confidence 98865
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=4.1e-17 Score=145.49 Aligned_cols=230 Identities=13% Similarity=0.019 Sum_probs=155.4
Q ss_pred CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCC
Q 016457 59 TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGS 135 (389)
Q Consensus 59 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 135 (389)
+..|.+||..... ...+..|...+...+|+|++ +.|+.++.+ ..|.+||+.+++.... .........++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG--~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDG--SKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCC--CEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCC
Confidence 3689999986444 55666788889999999999 678876643 3699999988754322 222233457899999
Q ss_pred CCeEEEee-cCCeEEEE--ECcCCceeeeeeecccCCeeEEEEecCCCCeEE-EEeCCCcEEEEecCCCCCCCccceeee
Q 016457 136 TDYLLAAG-CGSQIQFW--DWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV-SASVDGLICTFDTGGDINDDDLLESVI 211 (389)
Q Consensus 136 ~~~l~~~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~ 211 (389)
+..|+.+. .+|.+.|| |+.+++ ...+. .+...+....|+|+|+ .|+ ++..++...+|++...... .. ..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~-~i~f~s~~~g~~~I~~~~~~~~~---~~-~l 331 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLT-SGAGNNTEPSWSPDGQ-SILFTSDRSGSPQVYRMSASGGG---AS-LV 331 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC-eEeec-cCCCCcCCEEECCCCC-EEEEEECCCCCceEEEEECCCCC---eE-Ee
Confidence 99988876 47765554 665554 44455 4666788999999997 555 4446788888887632211 11 11
Q ss_pred ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457 212 NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG 291 (389)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~ 291 (389)
.+.. ....|+ ++++.|+..+.++ +.+||+.+++....... .....+.|+|+|+ +|+.++.
T Consensus 332 ~~~~--~~~~~S-pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--------------~~~~~~~~sPdG~--~i~~~s~ 391 (429)
T PRK01742 332 GGRG--YSAQIS-ADGKTLVMINGDN-VVKQDLTSGSTEVLSST--------------FLDESPSISPNGI--MIIYSST 391 (429)
T ss_pred cCCC--CCccCC-CCCCEEEEEcCCC-EEEEECCCCCeEEecCC--------------CCCCCceECCCCC--EEEEEEc
Confidence 2322 456788 7788887777654 56699988765432221 1124577999999 7888888
Q ss_pred CceEEEEEecc--CCccccCCCeEEEecccceeeeec
Q 016457 292 AGTVGYFPVNY--GGAATIGPPEAVLVGGHTAVVRSV 326 (389)
Q Consensus 292 dg~i~i~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~ 326 (389)
+|.+.+|.+.. ++. ...+. +|.+.+...
T Consensus 392 ~g~~~~l~~~~~~G~~------~~~l~-~~~g~~~~p 421 (429)
T PRK01742 392 QGLGKVLQLVSADGRF------KARLP-GSDGQVKFP 421 (429)
T ss_pred CCCceEEEEEECCCCc------eEEcc-CCCCCCCCc
Confidence 88888887643 332 46665 777777777
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=5.5e-17 Score=144.71 Aligned_cols=231 Identities=10% Similarity=0.019 Sum_probs=160.1
Q ss_pred CCCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecC---CeEEEEeCCCcee--eeeecCCCCcEEEEEEeCC
Q 016457 19 NVNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQY--SGECKGHSSTVNQISFSGP 91 (389)
Q Consensus 19 ~~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~ 91 (389)
.+..|++||... ..+.+.. ...+.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|+
T Consensus 182 ~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 182 QPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred ceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 357899999753 3444444 6789999999999999987654 3799999988753 3334444 346899999
Q ss_pred CCCCEEEEE-ecCCeEEEE--EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCc-eeeeeeecc
Q 016457 92 STPHVLHSC-SSDGTIRAW--DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKK-QVACLEESH 166 (389)
Q Consensus 92 ~~~~~l~s~-~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~-~~~~~~~~~ 166 (389)
+ +.|+.+ +.+|.+.|| |+.+++. ..+..+...+....|+|++..++.++. ++...||++.... ....+ .+
T Consensus 259 G--~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~ 333 (429)
T PRK01742 259 G--SRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GG 333 (429)
T ss_pred C--CEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cC
Confidence 9 567665 468876665 5555543 455556677889999999998877664 7888888775432 22222 23
Q ss_pred cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc--
Q 016457 167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW-- 244 (389)
Q Consensus 167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~-- 244 (389)
.. .+..|+|+++ .|+.++.++ +.+||+.++.. ..+... .....+.|+ +++++|+.++.++.+.+|++
T Consensus 334 ~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~-----~~lt~~-~~~~~~~~s-PdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 334 RG--YSAQISADGK-TLVMINGDN-VVKQDLTSGST-----EVLSST-FLDESPSIS-PNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred CC--CCccCCCCCC-EEEEEcCCC-EEEEECCCCCe-----EEecCC-CCCCCceEC-CCCCEEEEEEcCCCceEEEEEE
Confidence 33 4678999996 777777654 66699986531 111111 123567898 78899999999998888875
Q ss_pred CCCceeEEeecccccccCCccCCCCCceeeecccCC
Q 016457 245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGE 280 (389)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 280 (389)
.+++.++.+.. |...+...+|+|-
T Consensus 403 ~~G~~~~~l~~------------~~g~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPG------------SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccC------------CCCCCCCcccCCC
Confidence 35777777765 4567888899884
No 210
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=1.5e-19 Score=159.71 Aligned_cols=248 Identities=15% Similarity=0.162 Sum_probs=185.8
Q ss_pred eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEE
Q 016457 71 QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQF 150 (389)
Q Consensus 71 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 150 (389)
+.++.+.+|.+.|.|+.|...+ .++++|+.|..++||...++.++....+|.+.|+.++.+.++-.+++++.|..|++
T Consensus 181 k~ikrLlgH~naVyca~fDrtg--~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTG--RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHhhhhheeeeeecccc--ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 3445678899999999999888 79999999999999999999999999999999999999966667777778999999
Q ss_pred EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457 151 WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL 230 (389)
Q Consensus 151 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 230 (389)
|.+..+.++..+. +|++.|++|+|+|-. +.+.||++++||.+-......+.........-+.++.|. .++..+
T Consensus 259 Wrl~~~~pvsvLr-ghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~-~~~~~f 331 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLR-GHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE-NNGDRF 331 (1113)
T ss_pred EecCCCchHHHHh-ccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecc-cccccc
Confidence 9999999999998 999999999999963 678899999999982110000000111223456666676 677789
Q ss_pred EEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCC
Q 016457 231 WCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGP 310 (389)
Q Consensus 231 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~ 310 (389)
++++.|+.-..|.+....... ..+.-+.++.+-.. +.++.-.+-.+.+|++.++++
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~------------------~~lif~t~ssd~~~-~~~~ar~~~~~~vwnl~~g~l----- 387 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRS------------------NLLIFVTRSSDLSS-IVVTARNDHRLCVWNLYTGQL----- 387 (1113)
T ss_pred ccccCCcccccchhhHhhhhc------------------cceEEEeccccccc-cceeeeeeeEeeeeecccchh-----
Confidence 999999988888764321111 11111111111111 567777888999999999876
Q ss_pred CeEEEecccceeeeeccCCCcccCCCCCCCce-eEEEecCCCeEEEEeccCCc
Q 016457 311 PEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI-FGWTGGEDGRLCCWLSDDSS 362 (389)
Q Consensus 311 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~v~iW~~~~~~ 362 (389)
+..+ .+|...+..+ .++|-.. ...+++.||...||++-.+.
T Consensus 388 -~H~l-~ghsd~~yvL---------d~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 388 -LHNL-MGHSDEVYVL---------DVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred -hhhh-cccccceeee---------eecCCCcHhhhhccCCCceEeeecccCC
Confidence 3444 4888888888 5555443 34789999999999998873
No 211
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=6.3e-17 Score=128.69 Aligned_cols=288 Identities=11% Similarity=0.060 Sum_probs=198.2
Q ss_pred EEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEc
Q 016457 43 EIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA 122 (389)
Q Consensus 43 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 122 (389)
-++|+|+|+++|+++.- .+.|-|.++-+..+.+.. -+.|.-+.|..+.. ..|.....|+.|.+|++...+-..++..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~-~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSC-HILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccce-eeeeeeeccceEEEEEeecceeEEEecc
Confidence 45799999999999854 788889888877766653 45677899998874 4566678899999999999998889998
Q ss_pred CCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC------------
Q 016457 123 GSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD------------ 189 (389)
Q Consensus 123 ~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------------ 189 (389)
...++.+++|+|+++.++..+. +-.|.+|.+.+.+....-- -+..+..++|+|+|+ +.+..+..
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCc-eeeeeecccHHHHHHHHhhH
Confidence 8999999999999988877776 8999999998765543221 233457888999986 66555431
Q ss_pred ------------------------CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457 190 ------------------------GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK 245 (389)
Q Consensus 190 ------------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 245 (389)
..+.+||.-- ...+. .....-.+..++|+ |.+++|++|+.|+.+++.+--
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L----eykv~-aYe~~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL----EYKVY-AYERGLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEEecchh----hheee-eeeeccceeEEEec-cccceEEeeccchhhhhhcee
Confidence 1223333220 00000 11223467889999 778999999999999887654
Q ss_pred CCceeEEeecc-----------------------------cccccC-Ccc------------------------CCCCCc
Q 016457 246 DGQNVASFENA-----------------------------RSLASD-SWT------------------------LDDVDY 271 (389)
Q Consensus 246 ~~~~~~~~~~~-----------------------------~~~~~~-~~~------------------------~~~~~~ 271 (389)
+.+.+..|... .....+ .|. .+....
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 33322111100 000000 000 001234
Q ss_pred eeeecccCCCCeEEEEEecCC--ceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecC
Q 016457 272 FVDCHYPGEGENLWVIGGTGA--GTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGE 349 (389)
Q Consensus 272 i~~~~~~~~~~~~~l~~g~~d--g~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~ 349 (389)
+--++|++|.. |+++-... ..+.+||+...++ ..+. ....+|+.. .|+|....|+.+..
T Consensus 321 ~g~lafs~Ds~--y~aTrnd~~PnalW~Wdlq~l~l-------~avL-iQk~piraf---------~WdP~~prL~vctg 381 (447)
T KOG4497|consen 321 AGKLAFSCDST--YAATRNDKYPNALWLWDLQNLKL-------HAVL-IQKHPIRAF---------EWDPGRPRLVVCTG 381 (447)
T ss_pred cceeeecCCce--EEeeecCCCCceEEEEechhhhh-------hhhh-hhccceeEE---------EeCCCCceEEEEcC
Confidence 56689999988 87776443 6899999998775 3332 355678888 88888888888877
Q ss_pred CCeEEEEeccCC
Q 016457 350 DGRLCCWLSDDS 361 (389)
Q Consensus 350 dg~v~iW~~~~~ 361 (389)
...+++|.....
T Consensus 382 ~srLY~W~psg~ 393 (447)
T KOG4497|consen 382 KSRLYFWAPSGP 393 (447)
T ss_pred CceEEEEcCCCc
Confidence 788999987754
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.3e-18 Score=139.01 Aligned_cols=196 Identities=14% Similarity=0.109 Sum_probs=151.0
Q ss_pred EEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457 42 FEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121 (389)
Q Consensus 42 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 121 (389)
.+++|+++|..|++|+.||++|||++.....+.....|...|.++.|+||+ ++|++.+.| ..+||+++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg--k~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG--KFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC--cEEEEecCC-ceEEEEeccCchhhhcC
Confidence 689999999999999999999999988888888888899999999999999 799999999 89999999997665544
Q ss_pred c--CCCCeEEEEEeCCC---CeEEEeec--CCeEEEEECcCCce-----eeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457 122 A--GSQEIFCFSFGGST---DYLLAAGC--GSQIQFWDWRNKKQ-----VACLEESHVEDVTQVHFVPNNQNKVVSASVD 189 (389)
Q Consensus 122 ~--~~~~v~~~~~~~~~---~~l~~~~~--d~~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 189 (389)
. .+..+..+.|+.++ ..++++.. -+.|..||+..... ..+.. .....|++++.+++|+ +++.|+.|
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGk-f~AlGT~d 302 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGK-FLALGTMD 302 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCc-EEEEeccC
Confidence 2 24456677787444 23333332 45666666543221 11221 2335799999999996 99999999
Q ss_pred CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457 190 GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD 246 (389)
Q Consensus 190 ~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 246 (389)
|.|.|++..+- .........|...|+.+.|+ |+.+++++.+.+.+..+..+.-
T Consensus 303 GsVai~~~~~l---q~~~~vk~aH~~~VT~ltF~-Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSL---QRLQYVKEAHLGFVTGLTFS-PDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEecee---eeeEeehhhheeeeeeEEEc-CCcCcccccccCCceeEEEEee
Confidence 99999999842 22333345688899999999 6778899999998888877653
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=1.7e-16 Score=125.75 Aligned_cols=213 Identities=9% Similarity=0.086 Sum_probs=164.4
Q ss_pred CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC
Q 016457 79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN 155 (389)
Q Consensus 79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 155 (389)
-.++|+|.+|+++. ..++.+-....|.||..... +..++++.|...|++++|+|..++|++++.|..-++|....
T Consensus 9 ~~~pitchAwn~dr--t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR--TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCC--ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 45789999999999 78999999999999988754 46789999999999999999999999999999999999843
Q ss_pred C---ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEE
Q 016457 156 K---KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWC 232 (389)
Q Consensus 156 ~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 232 (389)
+ ++...+. .+....+++.|+|.+ |.|++|+.-..|.+|-++....-.-....-..+.+.|.++.|+ +++-+|++
T Consensus 87 ~~~WkptlvLl-RiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh-pnnVLlaa 163 (361)
T KOG1523|consen 87 GGTWKPTLVLL-RINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH-PNNVLLAA 163 (361)
T ss_pred CCeeccceeEE-EeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc-CCcceecc
Confidence 3 3444454 588999999999999 6999999999999998884321111111223456789999999 67788999
Q ss_pred EecCCcEEEEEcCCCceeEEeecccccccCCcc-----------C-CCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457 233 LTHIETLSIWDWKDGQNVASFENARSLASDSWT-----------L-DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV 300 (389)
Q Consensus 233 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 300 (389)
|+.|+..++|..- ++.+.... +...|. . ...+.+..+.|+|.|. .|+-.+.|..+.+-|.
T Consensus 164 Gs~D~k~rVfSay----IK~Vdekp--ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~--~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 164 GSTDGKCRVFSAY----IKGVDEKP--APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN--RLAWVGHDSTVSFVDA 235 (361)
T ss_pred cccCcceeEEEEe----eeccccCC--CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC--EeeEecCCCceEEeec
Confidence 9999999999742 11111100 001111 0 1458899999999999 6788889999999988
Q ss_pred ccCC
Q 016457 301 NYGG 304 (389)
Q Consensus 301 ~~~~ 304 (389)
....
T Consensus 236 ~~p~ 239 (361)
T KOG1523|consen 236 AGPS 239 (361)
T ss_pred CCCc
Confidence 7654
No 214
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.76 E-value=9.1e-17 Score=128.47 Aligned_cols=313 Identities=16% Similarity=0.203 Sum_probs=200.6
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc-e----eeeeecCCC------------CcEEEEEEeCCCCCCEEEEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-Q----YSGECKGHS------------STVNQISFSGPSTPHVLHSC 100 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-~----~~~~~~~~~------------~~v~~i~~~~~~~~~~l~s~ 100 (389)
.+-|.++.|..+|.+||+|..+|.|.++.-+.. + ....++.|. ..|..+.|.+++....++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 677899999999999999999999999964322 1 233344443 56899999998866778888
Q ss_pred ecCCeEEEEEccCCe-----------------------------------EEEEE-EcCCCCeEEEEEeCCCCeEEEeec
Q 016457 101 SSDGTIRAWDTRSFH-----------------------------------EVWSV-TAGSQEIFCFSFGGSTDYLLAAGC 144 (389)
Q Consensus 101 ~~dg~i~iwd~~~~~-----------------------------------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 144 (389)
+.|.+|++|.+.... +.+.+ ..|.-.|+++.++.+...+ .++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~-lSAD 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF-LSAD 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE-eecc
Confidence 899999999876321 11111 2456778999999555544 4556
Q ss_pred CCeEEEEECcCCce---eeeeee----cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC------------c
Q 016457 145 GSQIQFWDWRNKKQ---VACLEE----SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD------------D 205 (389)
Q Consensus 145 d~~i~iwd~~~~~~---~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~------------~ 205 (389)
|=.|.+|+++--.. +..+++ .-..-|++..|+|...+.++-.+..|+|++.|+|....-. .
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 78999999874322 222220 1234588999999988899999999999999999321000 0
Q ss_pred cceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc-CCCceeEEeecccccccCCccCCCCCce---eeecccCCC
Q 016457 206 LLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW-KDGQNVASFENARSLASDSWTLDDVDYF---VDCHYPGEG 281 (389)
Q Consensus 206 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~ 281 (389)
....+...-..|..+.|+ ++|.++++-.. -+|++||+ ...+++.+++.+..+.......-..+.| ..++|+.++
T Consensus 264 ~rsffseiIsSISDvKFs-~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFS-HSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred chhhHHHHhhhhhceEEc-cCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 001111123568889999 88888876433 58999999 4566777776543222111111112223 457888888
Q ss_pred CeEEEEEecCCceEEEEEeccCCcccc--------------CCCeEEEecccc----eeeeeccCCCcccCCCCCCCcee
Q 016457 282 ENLWVIGGTGAGTVGYFPVNYGGAATI--------------GPPEAVLVGGHT----AVVRSVLPMPSVQGRPAQSHGIF 343 (389)
Q Consensus 282 ~~~~l~~g~~dg~i~i~~~~~~~~~~~--------------~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~s~~~~~ 343 (389)
. ++++|+.....++|+...+..... .++......|.. ..+.++-....++..+|+|....
T Consensus 342 ~--~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ 419 (433)
T KOG1354|consen 342 S--YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENS 419 (433)
T ss_pred c--eEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccce
Confidence 7 899999999999999766543110 111111111111 01222223344555689999998
Q ss_pred EEEecCCCeEEEE
Q 016457 344 GWTGGEDGRLCCW 356 (389)
Q Consensus 344 l~s~~~dg~v~iW 356 (389)
+|.+... .+.++
T Consensus 420 ia~aatn-nlyif 431 (433)
T KOG1354|consen 420 IAVAATN-NLYIF 431 (433)
T ss_pred eeeeecC-ceEEe
Confidence 8887743 45554
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.7e-17 Score=138.40 Aligned_cols=270 Identities=14% Similarity=0.183 Sum_probs=195.7
Q ss_pred eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE-cCCCCeEEEEEeCC--CCeEEEeecCCeE
Q 016457 72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT-AGSQEIFCFSFGGS--TDYLLAAGCGSQI 148 (389)
Q Consensus 72 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i 148 (389)
+...+..|.+.|..|.|+..| ..|++|+.|..|.+||...++....+. +|...|....|-|. ...++.++.||.+
T Consensus 134 l~~kL~~H~GcVntV~FN~~G--d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRG--DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhcccCCCCccceeeecccC--ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 345677899999999999999 799999999999999999888776665 56777777777764 4568888889999
Q ss_pred EEEECcCCc-e--eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCC---ceeeEEE
Q 016457 149 QFWDWRNKK-Q--VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT---SVGKVGF 222 (389)
Q Consensus 149 ~iwd~~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~i~~~~~ 222 (389)
++=.+.... . ...+. .|.++|.-++.-|..++.|.+++.|+.+.-+|++......... ....+.. ....++.
T Consensus 212 r~s~i~~t~~~e~t~rl~-~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLA-PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAV 289 (559)
T ss_pred eeeeeccccceecceecc-cccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEec
Confidence 987765332 2 33444 7999999999999999999999999999999999765433333 2222333 5678888
Q ss_pred ecCCCcEEEEEecCCcEEEEEcCCCce------eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEE
Q 016457 223 FGETNKHLWCLTHIETLSIWDWKDGQN------VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVG 296 (389)
Q Consensus 223 ~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~ 296 (389)
.|.+...+++++.|..+++||.+.-.. +..+..+.... ...-.|++++|+.++.. |.+.-.|-.|+
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~------d~~v~ITgl~Ysh~~sE--lLaSYnDe~IY 361 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE------DDPVNITGLVYSHDGSE--LLASYNDEDIY 361 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc------cCcccceeEEecCCccc--eeeeecccceE
Confidence 877777999999999999999874322 23332211111 13467999999988774 34555777899
Q ss_pred EEEeccCCc------cccCCCeEEEecccc--eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 297 YFPVNYGGA------ATIGPPEAVLVGGHT--AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 297 i~~~~~~~~------~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
+|.-..+.- ......+...+.||. ..|..+. -|-|...|++||++-|.|.||+-...
T Consensus 362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVN--------FfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVN--------FFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred EeccccccCCCCCCCcchhhccchhhcccccccccceee--------eccCccceEEecCccceEEEEecchh
Confidence 995433321 001123344345886 3466662 46788999999999999999997654
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=2.5e-16 Score=133.06 Aligned_cols=252 Identities=15% Similarity=0.147 Sum_probs=168.1
Q ss_pred EeCCCCCCEEEEEecCCeEEEEEccCCe----EEEEEEcCCCCeEEEEE-----eCCCCeEEEeecCCeEEEEECcCCce
Q 016457 88 FSGPSTPHVLHSCSSDGTIRAWDTRSFH----EVWSVTAGSQEIFCFSF-----GGSTDYLLAAGCGSQIQFWDWRNKKQ 158 (389)
Q Consensus 88 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~iwd~~~~~~ 158 (389)
+.+++.+++|+-.-. ..+.+|+.+.+. ++..........+|-+| .|.+-.++.+=.-|.|.+.|....+.
T Consensus 129 ~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~ 207 (636)
T KOG2394|consen 129 TNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEV 207 (636)
T ss_pred ccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHH
Confidence 333333356665433 358888877432 22111111233334444 23455577777789999999876332
Q ss_pred eeeee---ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC------------------------CCccceeee
Q 016457 159 VACLE---ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN------------------------DDDLLESVI 211 (389)
Q Consensus 159 ~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------------------------~~~~~~~~~ 211 (389)
.+.+. .-.+..++|+.|-|.+++.++++..+|.+++||..-... ...++....
T Consensus 208 sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~ 287 (636)
T KOG2394|consen 208 SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH 287 (636)
T ss_pred HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE
Confidence 22111 023478999999999888999999999999998752110 012222333
Q ss_pred ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457 212 NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG 291 (389)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~ 291 (389)
.....|...+|+ +++++|++.+.||.++|||..+.+.+..... .-+...+++|+|||+ ||++|++
T Consensus 288 ~~~g~in~f~FS-~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS------------YFGGLLCvcWSPDGK--yIvtGGE 352 (636)
T KOG2394|consen 288 IGEGSINEFAFS-PDGKYLATVSQDGFLRIFDFDTQELLGVMKS------------YFGGLLCVCWSPDGK--YIVTGGE 352 (636)
T ss_pred eccccccceeEc-CCCceEEEEecCceEEEeeccHHHHHHHHHh------------hccceEEEEEcCCcc--EEEecCC
Confidence 334678899999 6999999999999999999988776654443 236789999999999 9999999
Q ss_pred CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCccc--------------------------CCCCCCCc----
Q 016457 292 AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQ--------------------------GRPAQSHG---- 341 (389)
Q Consensus 292 dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------------------------~~~~s~~~---- 341 (389)
|-.|.||.+..++. +..= .||...|..|..++-.. .-..+.++
T Consensus 353 DDLVtVwSf~erRV------VARG-qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s 425 (636)
T KOG2394|consen 353 DDLVTVWSFEERRV------VARG-QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLS 425 (636)
T ss_pred cceEEEEEeccceE------EEec-cccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccc
Confidence 99999999998876 4444 48999999994331000 00111122
Q ss_pred ---------eeEEEecCCCeEEEEeccCCc
Q 016457 342 ---------IFGWTGGEDGRLCCWLSDDSS 362 (389)
Q Consensus 342 ---------~~l~s~~~dg~v~iW~~~~~~ 362 (389)
-.+.|.|.|-.+++||+....
T Consensus 426 ~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 426 SFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred ccccccceEEEeecccccceEEEEecchhh
Confidence 247888999999999998653
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=4.2e-18 Score=141.10 Aligned_cols=252 Identities=14% Similarity=0.132 Sum_probs=193.0
Q ss_pred CCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCE
Q 016457 19 NVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHV 96 (389)
Q Consensus 19 ~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 96 (389)
..|.|-.+|.. .....+.-...|.++.|-...+++|++. ...++||| ..|..++.++.| ..|..+.|.|.. -+
T Consensus 149 rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyH--fL 223 (545)
T KOG1272|consen 149 RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYH--FL 223 (545)
T ss_pred CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc-Cchhhhcccchh--he
Confidence 34555555543 3333343378899999999888999887 67899999 458888888865 578999999988 68
Q ss_pred EEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEe
Q 016457 97 LHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFV 176 (389)
Q Consensus 97 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 176 (389)
|++++..|.++--|+.+|+.+..+....+.+..++-+|.+..+-+|...|+|.+|.....+++..+. .|.++|.+|++.
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL-cH~g~V~siAv~ 302 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL-CHRGPVSSIAVD 302 (545)
T ss_pred eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-hcCCCcceEEEC
Confidence 8899999999999999999999999888999999999999888889999999999999999988887 899999999999
Q ss_pred cCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc-CCC--ceeEEe
Q 016457 177 PNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW-KDG--QNVASF 253 (389)
Q Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~--~~~~~~ 253 (389)
++|. +++|.+.|..++|||+++. ..+..... ..+...++++ ..+ +++.+....+.||.- ..+ .....+
T Consensus 303 ~~G~-YMaTtG~Dr~~kIWDlR~~----~ql~t~~t-p~~a~~ls~S-qkg--lLA~~~G~~v~iw~d~~~~s~~~~~pY 373 (545)
T KOG1272|consen 303 RGGR-YMATTGLDRKVKIWDLRNF----YQLHTYRT-PHPASNLSLS-QKG--LLALSYGDHVQIWKDALKGSGHGETPY 373 (545)
T ss_pred CCCc-EEeecccccceeEeeeccc----cccceeec-CCCccccccc-ccc--ceeeecCCeeeeehhhhcCCCCCCcch
Confidence 9995 9999999999999999943 23333333 4567788887 333 555556668899952 221 122222
Q ss_pred ecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEE
Q 016457 254 ENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGY 297 (389)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i 297 (389)
-.++ ....|.++.|.|-.+ +|-.|-..|.-.+
T Consensus 374 m~H~----------~~~~V~~l~FcP~ED--vLGIGH~~G~tsi 405 (545)
T KOG1272|consen 374 MNHR----------CGGPVEDLRFCPYED--VLGIGHAGGITSI 405 (545)
T ss_pred hhhc----------cCcccccceeccHHH--eeeccccCCceeE
Confidence 2222 336888999999776 6666655554333
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=2.2e-15 Score=119.42 Aligned_cols=237 Identities=15% Similarity=0.182 Sum_probs=165.6
Q ss_pred cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCC--CeEEEEEeCCCCeEE-EeecC------CeEEEEE
Q 016457 82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ--EIFCFSFGGSTDYLL-AAGCG------SQIQFWD 152 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~d------~~i~iwd 152 (389)
...+++|+.|. ..++.|..+| .+||+.+--+.....+.+.. .+..+-| ..++++ ++|.+ +.|.|||
T Consensus 7 ~~lsvs~NQD~--ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDH--SCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCC--ceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEe
Confidence 34559999988 5888888777 89999875333222222222 2333333 234444 44432 5899999
Q ss_pred CcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc--CCceeeEEEecCCCcEE
Q 016457 153 WRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV--GTSVGKVGFFGETNKHL 230 (389)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l 230 (389)
=...+++.++. ...+|.++.+.++ .|++.- .+.|++|...... +.+..+... +....+++-. .+..+|
T Consensus 82 D~k~~~i~el~--f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~---k~l~~~et~~NPkGlC~~~~~-~~k~~L 151 (346)
T KOG2111|consen 82 DLKERCIIELS--FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNP---KLLHVIETRSNPKGLCSLCPT-SNKSLL 151 (346)
T ss_pred cccCcEEEEEE--eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCCh---hheeeeecccCCCceEeecCC-CCceEE
Confidence 66677888886 7899999999986 455554 6789999988432 223322221 2233333322 222334
Q ss_pred EE-EecCCcEEEEEcCCCce--eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce-EEEEEeccCCcc
Q 016457 231 WC-LTHIETLSIWDWKDGQN--VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT-VGYFPVNYGGAA 306 (389)
Q Consensus 231 ~~-~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~-i~i~~~~~~~~~ 306 (389)
+. |-.-|.|+|-|+...+. ...+.. |...|.+++.+.+|. .+|++|..|+ |+|||..++..
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~A------------H~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~~g~~- 216 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINA------------HDSDIACVALNLQGT--LVATASTKGTLIRIFDTEDGTL- 216 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEc------------ccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcCCCcE-
Confidence 33 33458999999876554 345555 779999999999999 8899999986 79999999877
Q ss_pred ccCCCeEEEecccc-eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457 307 TIGPPEAVLVGGHT-AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS 362 (389)
Q Consensus 307 ~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~ 362 (389)
+.++.+|-. ..|.++ +|||++.+|+.+|+-|+|.|+.+.+..
T Consensus 217 -----l~E~RRG~d~A~iy~i---------aFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 217 -----LQELRRGVDRADIYCI---------AFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -----eeeeecCCchheEEEE---------EeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 788876654 689999 999999999999999999999999863
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.3e-14 Score=117.04 Aligned_cols=227 Identities=12% Similarity=0.126 Sum_probs=156.7
Q ss_pred ccccCCCCeEEEEecC-ceeeeeec--CcceEEEeecCCC-CeEEEEecCCeEEEEeCCCc----ee----------eee
Q 016457 14 SQSCDNVNSIKRFGLK-NSIQTNFG--DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTG----QY----------SGE 75 (389)
Q Consensus 14 ~~s~~~~~~i~~w~~~-~~~~~~~~--~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~----~~----------~~~ 75 (389)
.|.+..|..|++|+.. +....++. ...|+|++|-|-+ ..|++|+.. -|.||....- .. +..
T Consensus 113 fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~ 191 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQ 191 (445)
T ss_pred hhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhhee
Confidence 4567889999999976 34444555 7789999999955 678888854 5999976421 11 122
Q ss_pred ecCCCCcEEEEEEeCCCCCCEEEEEec-CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc
Q 016457 76 CKGHSSTVNQISFSGPSTPHVLHSCSS-DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR 154 (389)
Q Consensus 76 ~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 154 (389)
..+| .+|+++.|++++ ..+++++. |..|.|||+.++..+.......+.++-+.|+|++..++++..|+..++|...
T Consensus 192 ~pgh-~pVtsmqwn~dg--t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDG--TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred CCCC-ceeeEEEEcCCC--CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 3445 689999999999 68888774 5689999999988776654456889999999999999999999999999654
Q ss_pred C-CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCc------c---cee-----ee----ccCC
Q 016457 155 N-KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDD------L---LES-----VI----NVGT 215 (389)
Q Consensus 155 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~---~~~-----~~----~~~~ 215 (389)
. .....-.. ..+.|..-.|+|.|+.+|++.+..-.++-........... . +.. .. -..+
T Consensus 269 q~wt~erw~l--gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cg 346 (445)
T KOG2139|consen 269 QSWTKERWIL--GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCG 346 (445)
T ss_pred ccceecceec--cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccC
Confidence 3 33322222 3458999999999986666666554444333321110000 0 000 00 1135
Q ss_pred ceeeEEEecCCCcEEEEEecCC--------cEEEEEcCCC
Q 016457 216 SVGKVGFFGETNKHLWCLTHIE--------TLSIWDWKDG 247 (389)
Q Consensus 216 ~i~~~~~~~~~~~~l~~~~~d~--------~i~i~d~~~~ 247 (389)
.+.+++|. +.|.+|++.-..+ .|.+||.+..
T Consensus 347 eaq~lawD-psGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 347 EAQCLAWD-PSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred ccceeeEC-CCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 77899999 7888998876554 3667776643
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=4.1e-16 Score=126.79 Aligned_cols=250 Identities=14% Similarity=0.160 Sum_probs=186.5
Q ss_pred CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE------EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEE
Q 016457 79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV------TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWD 152 (389)
Q Consensus 79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 152 (389)
....|..++|..++..+.+...+.|..+..+.+........+ .....+|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 446788899987776456666657777888887766554433 3346778777774 67888888899999999
Q ss_pred CcCCc----eeeeeeecccCCeeEEEEecCCCCeEEEEeCC--CcEEEEecCCCCCCCc---cceeeec--cCCceeeEE
Q 016457 153 WRNKK----QVACLEESHVEDVTQVHFVPNNQNKVVSASVD--GLICTFDTGGDINDDD---LLESVIN--VGTSVGKVG 221 (389)
Q Consensus 153 ~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~---~~~~~~~--~~~~i~~~~ 221 (389)
.+.+. ++..+. ....+..|.-++..++++++|+.. ..+.+||+....+... ......+ .+-+++++.
T Consensus 132 ~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 88442 334443 346678888888888788889999 8899999995421100 0000111 223567888
Q ss_pred EecCC-CcEEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 222 FFGET-NKHLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 222 ~~~~~-~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
|.+++ ...|++++.-+.+++||.+.+ +++..|.. .+.+++++...|.++ +|++|..-|.+..||
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~------------~E~~is~~~l~p~gn--~Iy~gn~~g~l~~FD 275 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF------------LENPISSTGLTPSGN--FIYTGNTKGQLAKFD 275 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEecc------------ccCcceeeeecCCCc--EEEEecccchhheec
Confidence 88431 568999999999999999876 46666665 347899999999999 889999999999999
Q ss_pred eccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 300 VNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
+..++. +.....+-.+.|+++ ..+|.+++|+++|.|..|||+|++..
T Consensus 276 ~r~~kl------~g~~~kg~tGsirsi---------h~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 276 LRGGKL------LGCGLKGITGSIRSI---------HCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccCcee------eccccCCccCCcceE---------EEcCCCceEEeeccceeEEEeecccc
Confidence 999876 343234677889999 78899999999999999999999986
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.2e-15 Score=124.09 Aligned_cols=244 Identities=11% Similarity=0.169 Sum_probs=187.5
Q ss_pred CcceEEEeecCCC--CeEEEEecCCeEEEEeCCCceeeee------ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457 38 DDYVFEIVPKNDW--SLMAVSLSTNVVKLYSPVTGQYSGE------CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109 (389)
Q Consensus 38 ~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~------~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 109 (389)
...|..++|.-++ ..|...+.+..+..+.+........ ....+.+|..++.. ++ .|++|-.+|.+.+|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEEE
Confidence 5678888887665 3444443566777777665544433 23356677777775 45 79999999999999
Q ss_pred EccCC----eEEEEEEcCCCCeEEEEEeCCCCeEEE-eecC--CeEEEEECcCCceeeeeeec--------ccCCeeEEE
Q 016457 110 DTRSF----HEVWSVTAGSQEIFCFSFGGSTDYLLA-AGCG--SQIQFWDWRNKKQVACLEES--------HVEDVTQVH 174 (389)
Q Consensus 110 d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~ 174 (389)
....+ .++..+..+ ..+..+.-++..+.+++ ||.. ..+++||+.+.+++.+-+.. -.-.++.+.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 98843 344455554 67888888888888887 5556 78999999988666554311 122467788
Q ss_pred EecC--CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEE
Q 016457 175 FVPN--NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVAS 252 (389)
Q Consensus 175 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 252 (389)
|.+. . +.|++++.-+.+++||.+.+ ..++..+.-.+.++.++... +++++++++..-+.+..||++.++....
T Consensus 210 Fl~g~~~-~~fat~T~~hqvR~YDt~~q---RRPV~~fd~~E~~is~~~l~-p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 210 FLEGSPN-YKFATITRYHQVRLYDTRHQ---RRPVAQFDFLENPISSTGLT-PSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred ecCCCCC-ceEEEEecceeEEEecCccc---CcceeEeccccCcceeeeec-CCCcEEEEecccchhheecccCceeecc
Confidence 8876 4 58999999999999999954 46777777788999999999 7889999999999999999999988776
Q ss_pred -eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 253 -FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 253 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
+.+ ..+.+.++..+|..+ +|++++-|..|+|+|+.+.++
T Consensus 285 ~~kg------------~tGsirsih~hp~~~--~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 285 GLKG------------ITGSIRSIHCHPTHP--VLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccCC------------ccCCcceEEEcCCCc--eEEeeccceeEEEeecccchh
Confidence 555 448899999999988 999999999999999999654
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=7.7e-15 Score=118.39 Aligned_cols=295 Identities=11% Similarity=0.119 Sum_probs=184.0
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC--
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-- 114 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-- 114 (389)
.-.+..++|++.-..+|++..|..|++|+-.. +....++. ....|+|++|-|.+. ..|+.|+..| |.||.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsa-selavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSA-SELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCc-ceeeeeecce-eEEEEcCcccc
Confidence 45678899999888899999999999999665 44444442 456799999999886 5788887766 999986521
Q ss_pred --eE----------EEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCC
Q 016457 115 --HE----------VWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN 181 (389)
Q Consensus 115 --~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 181 (389)
.. +..-.+| .+|+++.|++++..+++++. |..|.|||..++..+.-.. ...+.++-+.|+|++.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd- 251 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGD- 251 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCC-
Confidence 11 1122233 78999999999988888887 7899999999887665543 3456789999999996
Q ss_pred eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE-EEEecCCcEEEEEcCCCc------------
Q 016457 182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL-WCLTHIETLSIWDWKDGQ------------ 248 (389)
Q Consensus 182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~------------ 248 (389)
+|++++-|+..++|+... .....+... ..+.|...+|+ +.|.+| ++.+..-. +|.+.-..
T Consensus 252 ~lfaAt~davfrlw~e~q---~wt~erw~l-gsgrvqtacWs-pcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQ---SWTKERWIL-GSGRVQTACWS-PCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EEEEecccceeeeehhcc---cceecceec-cCCceeeeeec-CCCCEEEEEEcCCce--EEEEeecCCCccccCcccce
Confidence 999999999999996652 112222222 34489999999 555554 44444333 44432110
Q ss_pred eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC--------ceEEEEEeccCCccccCCCeEEEecccc
Q 016457 249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA--------GTVGYFPVNYGGAATIGPPEAVLVGGHT 320 (389)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d--------g~i~i~~~~~~~~~~~~~~~~~~~~~h~ 320 (389)
.+..+.+........-..--.+.+.+++|.|.|. ||++.-.. +.|.+||...... +..++-|-
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe--yLav~fKg~~~v~~~k~~i~~fdtr~sp~------vels~cg~- 395 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE--YLAVIFKGQSFVLLCKLHISRFDTRKSPP------VELSYCGM- 395 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCC--EEEEEEcCCchhhhhhhhhhhhcccccCc------eEEEeccc-
Confidence 0000001000000000000236788999999999 66654333 2355565543221 11111000
Q ss_pred eeeeeccCCCcccCCCCC---CCceeEEEecCCCeEEEEeccC
Q 016457 321 AVVRSVLPMPSVQGRPAQ---SHGIFGWTGGEDGRLCCWLSDD 360 (389)
Q Consensus 321 ~~v~~~~~~~~~~~~~~s---~~~~~l~s~~~dg~v~iW~~~~ 360 (389)
+.. +.+..+ +|+ .++.+|..|=..|.+.-|.+.-
T Consensus 396 --i~g--e~P~~I--sF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 396 --IGG--EYPAYI--SFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred --ccC--CCCceE--EeeecccCCcEEEEEeccCceEeeeeEE
Confidence 000 112222 444 3566676666678888887653
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.6e-14 Score=128.70 Aligned_cols=229 Identities=10% Similarity=0.014 Sum_probs=149.4
Q ss_pred eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe---cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457 61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS---SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD 137 (389)
Q Consensus 61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 137 (389)
.|.++|.+.... ..+..+...+...+|+|++ +.|+..+ .+..|.+|++.+++..... .....+...+|+|++.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG--~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDG--SKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGS 255 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCC--CEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCC
Confidence 688999875443 3344466789999999999 6777543 2457999999887643322 2234455789999999
Q ss_pred eEEEeec-CC--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC-CCc--EEEEecCCCCCCCccceeee
Q 016457 138 YLLAAGC-GS--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV-DGL--ICTFDTGGDINDDDLLESVI 211 (389)
Q Consensus 138 ~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~ 211 (389)
.|+.... +| .|++||+.+++... +. .+...+....|+|+++ .|+..+. ++. |+++|+.++. ...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~-lt-~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~g~-----~~~lt 327 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQ-VT-DGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNINGGA-----PQRIT 327 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEE-cc-CCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCCCC-----eEEee
Confidence 8887643 44 59999998876544 33 3445678899999996 6766654 344 4455665432 22333
Q ss_pred ccCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457 212 NVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG 288 (389)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 288 (389)
..........|+ ++++.++..+.+ ..|.+||+.+++.. .+... .......|+|||+ +|+.
T Consensus 328 ~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-------------~~~~~p~~SpDG~--~i~~ 390 (429)
T PRK03629 328 WEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-------------FLDETPSIAPNGT--MVIY 390 (429)
T ss_pred cCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-------------CCCCCceECCCCC--EEEE
Confidence 334445678898 677777665543 36888999877543 33221 1224578999999 6666
Q ss_pred ecCCc---eEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457 289 GTGAG---TVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV 326 (389)
Q Consensus 289 g~~dg---~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 326 (389)
.+.++ .++++++..... ..+. +|.+.+...
T Consensus 391 ~s~~~~~~~l~~~~~~G~~~-------~~l~-~~~~~~~~p 423 (429)
T PRK03629 391 SSSQGMGSVLNLVSTDGRFK-------ARLP-ATDGQVKFP 423 (429)
T ss_pred EEcCCCceEEEEEECCCCCe-------EECc-cCCCCcCCc
Confidence 66554 367777754433 5554 677777777
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.1e-15 Score=127.53 Aligned_cols=265 Identities=16% Similarity=0.176 Sum_probs=191.9
Q ss_pred ccccCCCCeEEEEecCceeeeee-c--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeC
Q 016457 14 SQSCDNVNSIKRFGLKNSIQTNF-G--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSG 90 (389)
Q Consensus 14 ~~s~~~~~~i~~w~~~~~~~~~~-~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~ 90 (389)
.|++.....|++||+.+....+. + .+.|.-.-.+.|-..++.-..|.+|.+...- |... .++ -...-.+++++.
T Consensus 67 lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~hy-~~R-IP~~GRDm~y~~ 143 (703)
T KOG2321|consen 67 LATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRHY-RTR-IPKFGRDMKYHK 143 (703)
T ss_pred EEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ceee-eee-cCcCCccccccC
Confidence 56777788899999987655554 3 4445555566676777777778888776532 3211 111 112234566654
Q ss_pred CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-----c
Q 016457 91 PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-----S 165 (389)
Q Consensus 91 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~ 165 (389)
... ++++.| ....|.-+++..|+.+..|....+.++++..++..+.|++|+.+|.|.+||.+....+.++.. .
T Consensus 144 ~sc-Dly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s 221 (703)
T KOG2321|consen 144 PSC-DLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS 221 (703)
T ss_pred CCc-cEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCC
Confidence 442 344444 445688889999999999998889999999998888888888899999999998877766651 1
Q ss_pred ccC-----CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEE
Q 016457 166 HVE-----DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLS 240 (389)
Q Consensus 166 ~~~-----~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~ 240 (389)
|.+ .|+++.|+.+| -.+++|+.+|.+.|||+++.. ..+..-.....+|..+.|.+.+++--++......++
T Consensus 222 ~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~---pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~k 297 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASK---PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILK 297 (703)
T ss_pred CccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCC---ceeecccCCccceeeecccccCCCceEEecchHHhh
Confidence 222 39999999998 599999999999999999643 223333344568899999855444455555667999
Q ss_pred EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 241 IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 241 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
|||-.+|+....+.. ...+..+|+-|++. +++++-.++.+..|=+..
T Consensus 298 iWd~~~Gk~~asiEp-------------t~~lND~C~~p~sG--m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 298 IWDECTGKPMASIEP-------------TSDLNDFCFVPGSG--MFFTANESSKMHTYYIPS 344 (703)
T ss_pred hcccccCCceeeccc-------------cCCcCceeeecCCc--eEEEecCCCcceeEEccc
Confidence 999999999888774 35589999999887 788888888777775554
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2.2e-14 Score=127.72 Aligned_cols=233 Identities=10% Similarity=-0.031 Sum_probs=154.4
Q ss_pred CCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEec---CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457 20 VNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLS---TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP 94 (389)
Q Consensus 20 ~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 94 (389)
...|.++|... ..+.+.. ...+.+.+|+|||+.|+..+. +..|.+|++.+++..... .....+..++|+|++
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG-- 254 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDG-- 254 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCC--
Confidence 34788888753 2333333 678999999999999887643 457999999887543221 222334568999999
Q ss_pred CEEEE-EecCC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CC--eEEEEECcCCceeeeeeecccC
Q 016457 95 HVLHS-CSSDG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GS--QIQFWDWRNKKQVACLEESHVE 168 (389)
Q Consensus 95 ~~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~ 168 (389)
+.|+. .+.+| .|.+||+.+++.... ..+...+....|+|+++.++.++. ++ .|.++|+.+++. ..+. ....
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt-~~~~ 331 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRIT-WEGS 331 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEee-cCCC
Confidence 56664 34455 588899988766543 333457788999999998887776 34 455557666543 3343 3444
Q ss_pred CeeEEEEecCCCCeEEEEeCC---CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCc---EEEE
Q 016457 169 DVTQVHFVPNNQNKVVSASVD---GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIET---LSIW 242 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~---i~i~ 242 (389)
......|+|+|+ .|+..+.+ ..|.+||+.++. ...+.. ........|+ +++..|+.++.++. +.++
T Consensus 332 ~~~~~~~SpDG~-~Ia~~~~~~g~~~I~~~dl~~g~-----~~~Lt~-~~~~~~p~~S-pDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 332 QNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG-----VQVLTD-TFLDETPSIA-PNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred CccCEEECCCCC-EEEEEEccCCCceEEEEECCCCC-----eEEeCC-CCCCCCceEC-CCCCEEEEEEcCCCceEEEEE
Confidence 566789999996 66665443 358889988653 222221 1223467898 78888888887763 6677
Q ss_pred EcCCCceeEEeecccccccCCccCCCCCceeeecccC
Q 016457 243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG 279 (389)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (389)
++ ++.....+.. |...+...+|+|
T Consensus 404 ~~-~G~~~~~l~~------------~~~~~~~p~Wsp 427 (429)
T PRK03629 404 ST-DGRFKARLPA------------TDGQVKFPAWSP 427 (429)
T ss_pred EC-CCCCeEECcc------------CCCCcCCcccCC
Confidence 76 4555566654 446677888887
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=6.6e-15 Score=125.62 Aligned_cols=285 Identities=13% Similarity=0.073 Sum_probs=201.1
Q ss_pred CcceEEEeecCCCCeE-EEEecCCeEEEEeCCCceeeeeecCCC--CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457 38 DDYVFEIVPKNDWSLM-AVSLSTNVVKLYSPVTGQYSGECKGHS--STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF 114 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 114 (389)
...-+.|..+|||+++ |+|..--.|++||+.+..+ .|..|. ..|.-.-.+.+- ..++--..|.+|.+..-- |
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~--SK~v~L~~DR~IefHak~-G 125 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDY--SKSVFLQNDRTIEFHAKY-G 125 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccch--hhheEeecCceeeehhhc-C
Confidence 7778899999999875 5666688999999875433 333333 334433444333 345555667777765422 2
Q ss_pred eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457 115 HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT 194 (389)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 194 (389)
.. ..++. ...-..++++...--|++++....|+=++++.|.-+..+. .....++++..++... +|++|+.+|.|-.
T Consensus 126 ~h-y~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hg-Lla~Gt~~g~VEf 201 (703)
T KOG2321|consen 126 RH-YRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHG-LLACGTEDGVVEF 201 (703)
T ss_pred ee-eeeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccc-cccccceeeeecCccc-eEEecccCceEEE
Confidence 21 12222 2344567777666778888887899999999999988887 5668899999999986 9999999999999
Q ss_pred EecCCCCCCC--ccceeeeccC-----CceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCC
Q 016457 195 FDTGGDINDD--DLLESVINVG-----TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLD 267 (389)
Q Consensus 195 ~d~~~~~~~~--~~~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 267 (389)
||.+...... .....+..+. ..|+++.|. ++|-.+++|+.+|.+.|||++..+++..-...
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~----------- 269 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-DDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG----------- 269 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEec-CCceeEEeeccCCcEEEEEcccCCceeecccC-----------
Confidence 9999542110 0011111222 348999998 77999999999999999999988877554321
Q ss_pred CCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe
Q 016457 268 DVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG 347 (389)
Q Consensus 268 ~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~ 347 (389)
..-+|..+.|.+.+++--|++. ....++|||-.+++. ...+. .+..++.+ ++-|++-++++|
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~------~asiE--pt~~lND~---------C~~p~sGm~f~A 331 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP------MASIE--PTSDLNDF---------CFVPGSGMFFTA 331 (703)
T ss_pred CccceeeecccccCCCceEEec-chHHhhhcccccCCc------eeecc--ccCCcCce---------eeecCCceEEEe
Confidence 4467889999877443344554 557899999999876 44443 34457788 677777778999
Q ss_pred cCCCeEEEEeccCC
Q 016457 348 GEDGRLCCWLSDDS 361 (389)
Q Consensus 348 ~~dg~v~iW~~~~~ 361 (389)
-+++.+..|=+...
T Consensus 332 ne~~~m~~yyiP~L 345 (703)
T KOG2321|consen 332 NESSKMHTYYIPSL 345 (703)
T ss_pred cCCCcceeEEcccc
Confidence 99998888877755
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.70 E-value=4.6e-13 Score=115.82 Aligned_cols=278 Identities=14% Similarity=0.119 Sum_probs=173.3
Q ss_pred CeEE-EEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEE
Q 016457 51 SLMA-VSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFC 129 (389)
Q Consensus 51 ~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 129 (389)
++++ +-..++.|.+.|..+.+.+..+......-..+.|+|++ +++++++.||.|.++|+.+++.+.+++.. ....+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg--r~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG--RYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S--SEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC--CEEEEEcCCCeEEEEECCcccEEEEEecC-CCcce
Confidence 3444 44558999999999999999998655444457899999 78999999999999999999999999875 56788
Q ss_pred EEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeec------ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC
Q 016457 130 FSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEES------HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN 202 (389)
Q Consensus 130 ~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 202 (389)
+++++++++++++.. .+.+.++|.++.++++.+..+ ....+..|..+|..+.++++.-+.+.|.+.|....
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-- 160 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-- 160 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS--
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc--
Confidence 999999999998876 899999999999999887621 23457788888888634444444588888888743
Q ss_pred CCccceeeeccCCceeeEEEecCCCcEEEE-EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457 203 DDDLLESVINVGTSVGKVGFFGETNKHLWC-LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG 281 (389)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 281 (389)
..................|. ++++++++ ...++.|.++|..+++.+..+...+.. |......+ .+|..
T Consensus 161 -~~~~~~~i~~g~~~~D~~~d-pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p--------~~~~~~~~-php~~ 229 (369)
T PF02239_consen 161 -KNLKVTTIKVGRFPHDGGFD-PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP--------HPGPGANF-PHPGF 229 (369)
T ss_dssp -SCEEEEEEE--TTEEEEEE--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB--------EETTEEEE-EETTT
T ss_pred -cccceeeecccccccccccC-cccceeeecccccceeEEEeeccceEEEEeeccccc--------cccccccc-cCCCc
Confidence 12233444456677888998 67776655 456779999999999887776543321 22333322 23322
Q ss_pred CeEEEEEecCCce--------EEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe----cC
Q 016457 282 ENLWVIGGTGAGT--------VGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG----GE 349 (389)
Q Consensus 282 ~~~~l~~g~~dg~--------i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~----~~ 349 (389)
..++...+..... +.+|+....+. +.++. ..... +.+..+|++++|+.. ..
T Consensus 230 g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv------v~~I~-~~G~g----------lFi~thP~s~~vwvd~~~~~~ 292 (369)
T PF02239_consen 230 GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV------VKTIP-TQGGG----------LFIKTHPDSRYVWVDTFLNPD 292 (369)
T ss_dssp EEEEEEEBSSSSEEEEEE--TTT-STTTBTSE------EEEEE--SSSS------------EE--TT-SEEEEE-TT-SS
T ss_pred ceEEeeccccceecccccCCccccchhhcCeE------EEEEE-CCCCc----------ceeecCCCCccEEeeccCCCC
Confidence 2112122222222 23333333322 44444 22222 333779999999988 45
Q ss_pred CCeEEEEeccCC
Q 016457 350 DGRLCCWLSDDS 361 (389)
Q Consensus 350 dg~v~iW~~~~~ 361 (389)
.+.|.++|.++.
T Consensus 293 ~~~v~viD~~tl 304 (369)
T PF02239_consen 293 ADTVQVIDKKTL 304 (369)
T ss_dssp HT-EEEEECCGT
T ss_pred CceEEEEECcCc
Confidence 689999999987
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3.1e-14 Score=127.44 Aligned_cols=233 Identities=14% Similarity=0.036 Sum_probs=152.5
Q ss_pred CCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457 20 VNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP 94 (389)
Q Consensus 20 ~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 94 (389)
...|.+||... ..+.+.. ...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +..+.+...+.+|+|++
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG-- 259 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDG-- 259 (433)
T ss_pred eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCC--
Confidence 34688998753 3444444 7789999999999999987643 479999998776533 23334455678999999
Q ss_pred CEE-EEEecCC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CC--eEEEEECcCCceeeeeeecccC
Q 016457 95 HVL-HSCSSDG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GS--QIQFWDWRNKKQVACLEESHVE 168 (389)
Q Consensus 95 ~~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~ 168 (389)
+.| ++.+.+| .|.+||+.+++.. .+..+.......+|+|++..++.++. +| .|.++|+.+++.. .+. .+..
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt-~~g~ 336 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLT-FQGN 336 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eee-cCCC
Confidence 455 4556555 5999999887654 44444455678899999998888765 44 4777777666533 332 2334
Q ss_pred CeeEEEEecCCCCeEEEEeCCC---cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC---CcEEEE
Q 016457 169 DVTQVHFVPNNQNKVVSASVDG---LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI---ETLSIW 242 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~ 242 (389)
.....+|+|+|+ .|+..+.++ .|.+||+.++. ...+. +........|+ +++++++..+.+ +.|.++
T Consensus 337 ~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~-----~~~Lt-~~~~~~~p~~s-pdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 337 YNARASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGS-----VRTLT-PGSLDESPSFA-PNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred CccCEEECCCCC-EEEEEECCCCceeEEEEECCCCC-----eEECC-CCCCCCCceEC-CCCCEEEEEEecCCceEEEEE
Confidence 455789999996 666654333 59999997553 12222 22244567898 677776665553 367788
Q ss_pred EcCCCceeEEeecccccccCCccCCCCCceeeecccC
Q 016457 243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG 279 (389)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (389)
++. +.....+.. +...+...+|+|
T Consensus 409 ~~~-g~~~~~l~~------------~~g~~~~p~wsp 432 (433)
T PRK04922 409 STD-GRVRQRLVS------------ADGEVREPAWSP 432 (433)
T ss_pred ECC-CCceEEccc------------CCCCCCCCccCC
Confidence 875 444444443 224456666765
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=2.6e-15 Score=127.05 Aligned_cols=170 Identities=16% Similarity=0.234 Sum_probs=134.6
Q ss_pred CCCCeEEEEecCCeEEEEeCCCceeeeeec----CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---------
Q 016457 48 NDWSLMAVSLSTNVVKLYSPVTGQYSGECK----GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF--------- 114 (389)
Q Consensus 48 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------- 114 (389)
|.+--|.+|-..|.|.+.|....+..+.+. -.+..|+++.|.|.+. ..++.+-.+|.+.++|....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~-~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSD-SLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCC-ceEEEEEecCceEEeeccccccCCCCccc
Confidence 456678888889999999976533322222 1347899999999775 67888889999999975311
Q ss_pred -------------------eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEE
Q 016457 115 -------------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHF 175 (389)
Q Consensus 115 -------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 175 (389)
.++..+......|...+|+|++.+|++.+.||.++|||..+.+.+..++ .--+...|++|
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcW 340 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCW 340 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEE
Confidence 1122222235688899999999999999999999999999888776665 45577999999
Q ss_pred ecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEec
Q 016457 176 VPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFG 224 (389)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 224 (389)
+|||+ +|++|++|-.|.||.+. +...+..-.+|.++|..|+|.|
T Consensus 341 SPDGK-yIvtGGEDDLVtVwSf~----erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDGK-YIVTGGEDDLVTVWSFE----ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCcc-EEEecCCcceEEEEEec----cceEEEeccccccceeeEeecc
Confidence 99997 99999999999999998 4567777889999999999983
No 230
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.68 E-value=1e-15 Score=122.50 Aligned_cols=269 Identities=11% Similarity=0.137 Sum_probs=183.6
Q ss_pred CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe-----EEEEEEcC------------CCCeEEEEEeCCCC--eE
Q 016457 79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH-----EVWSVTAG------------SQEIFCFSFGGSTD--YL 139 (389)
Q Consensus 79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~~--~l 139 (389)
..+-|.+|.|...| ++|++|..+|.|.++.-.... ....++.| ...|..+.|.++++ .+
T Consensus 24 eadiis~vef~~~G--e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 24 EADIISAVEFDHYG--ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hhcceeeEEeeccc--ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 35678999999999 799999999999999754322 23345444 24678889987654 57
Q ss_pred EEeecCCeEEEEECcCCce-----------------------------------eeeeeecccCCeeEEEEecCCCCeEE
Q 016457 140 LAAGCGSQIQFWDWRNKKQ-----------------------------------VACLEESHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 140 ~~~~~d~~i~iwd~~~~~~-----------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~ 184 (389)
+.++.|.+|++|-++.... .+.+..+|.--|++|.++.+++ .++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~l 180 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFL 180 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEe
Confidence 8888899999998753211 1112246777899999999986 666
Q ss_pred EEeCCCcEEEEecCCCCCCCccceeeec-----cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee----EEeec
Q 016457 185 SASVDGLICTFDTGGDINDDDLLESVIN-----VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV----ASFEN 255 (389)
Q Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~ 255 (389)
++ .|=.|.+|++.-.... -.+..+.. ....|++..|+|.....++-++..|+|++-|++..... +.+..
T Consensus 181 SA-DdLRINLWnlei~d~s-FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 181 SA-DDLRINLWNLEIIDQS-FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred ec-cceeeeeccccccCCc-eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 65 4888999999832211 11122222 23468899999888889999999999999999854221 11221
Q ss_pred ccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc---eeeeecc---CC
Q 016457 256 ARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT---AVVRSVL---PM 329 (389)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~---~~ 329 (389)
.......++-.+-...|.++.|++.|+ |+++-+. -+|++||+..... |+...+ .|. ..+.+++ ..
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGr--yilsRDy-ltvk~wD~nme~~-----pv~t~~-vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGR--YILSRDY-LTVKLWDLNMEAK-----PVETYP-VHEYLRSKLCSLYENDAI 329 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCc--EEEEecc-ceeEEEeccccCC-----cceEEe-ehHhHHHHHHHHhhccch
Confidence 111111111112335788999999999 8887643 5799999965432 345554 565 3444444 23
Q ss_pred CcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 330 PSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 330 ~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
-..+.++|+.++.+++||+....++++++..+
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 34556799999999999999999999997766
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.9e-14 Score=127.55 Aligned_cols=215 Identities=13% Similarity=0.087 Sum_probs=141.4
Q ss_pred CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC
Q 016457 60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136 (389)
Q Consensus 60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 136 (389)
..|.+||.. +.....+..+...+.+.+|+|++ +.|+..+.+ ..|.+||+.+++... +........+.+|+|++
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg--~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDG--KKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCC--CEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCC
Confidence 368999986 44444555677789999999999 677776633 469999998776543 33334455688999999
Q ss_pred CeEEEee-cCC--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCCc--EEEEecCCCCCCCccceee
Q 016457 137 DYLLAAG-CGS--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDGL--ICTFDTGGDINDDDLLESV 210 (389)
Q Consensus 137 ~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~--i~i~d~~~~~~~~~~~~~~ 210 (389)
+.++.+. .+| .|++||+.+++.. .+. .+.......+|+|+++ .|+.++ .+|. |+++|+.++. ...+
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~spDG~-~l~f~sd~~g~~~iy~~dl~~g~-----~~~l 331 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLT-NHFGIDTEPTWAPDGK-SIYFTSDRGGRPQIYRVAASGGS-----AERL 331 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeE-ECc-cCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCC-----eEEe
Confidence 9886543 344 6999999887643 444 3555567889999996 666655 4444 6666766432 2222
Q ss_pred eccCCceeeEEEecCCCcEEEEEecCC---cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457 211 INVGTSVGKVGFFGETNKHLWCLTHIE---TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI 287 (389)
Q Consensus 211 ~~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 287 (389)
..........+|+ ++++.++..+.++ .|.+||+.+++.. .+.. ........|+|+|+ +|+
T Consensus 332 t~~g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-------------~~~~~~p~~spdG~--~i~ 394 (433)
T PRK04922 332 TFQGNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-------------GSLDESPSFAPNGS--MVL 394 (433)
T ss_pred ecCCCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-------------CCCCCCceECCCCC--EEE
Confidence 2233345568999 6777777665443 6999999877644 3322 12334578999999 444
Q ss_pred EecC---CceEEEEEeccC
Q 016457 288 GGTG---AGTVGYFPVNYG 303 (389)
Q Consensus 288 ~g~~---dg~i~i~~~~~~ 303 (389)
..+. .+.|++++...+
T Consensus 395 ~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 395 YATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEEecCCceEEEEEECCCC
Confidence 4333 245777777543
No 232
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.68 E-value=1e-14 Score=116.87 Aligned_cols=226 Identities=12% Similarity=0.149 Sum_probs=168.1
Q ss_pred CCCccccCCCCeEEEEecC---ceeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCC----CceeeeeecCCCC
Q 016457 11 QPKSQSCDNVNSIKRFGLK---NSIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV----TGQYSGECKGHSS 81 (389)
Q Consensus 11 ~~~~~s~~~~~~i~~w~~~---~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~----~~~~~~~~~~~~~ 81 (389)
.|..-+.+.|.++|+|--. +....+.. ..+++++++.++...|++|..+|++.-+.+. .....+.+..|..
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~ 115 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQA 115 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhc
Confidence 4566788999999999643 44455555 8899999999999999999999999988653 3455667778999
Q ss_pred cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc--CCcee
Q 016457 82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR--NKKQV 159 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~ 159 (389)
.|..+.|+-.. +.+++.+.|..+.---.+.+..+..+... ...+++.+.-. ..+++-..|.|.+-.+. .-.++
T Consensus 116 ~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i 190 (404)
T KOG1409|consen 116 RVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLI 190 (404)
T ss_pred ceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE--EEEecccccceEEEEEeecCCceE
Confidence 99999998776 79999999987765445555544333221 22222222211 44444445666655443 34567
Q ss_pred eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcE
Q 016457 160 ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239 (389)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i 239 (389)
.++. +|...++++.|.|... ++.+|..|..+.+||+-... .......+|...|..+... +--..+.+++.||.|
T Consensus 191 ~~~~-~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~---g~~~el~gh~~kV~~l~~~-~~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 191 TTFN-GHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRK---GTAYELQGHNDKVQALSYA-QHTRQLISCGEDGGI 264 (404)
T ss_pred EEEc-CcccceEEEEEcCCCc-EEEeccccCceEEEeccCCc---ceeeeeccchhhhhhhhhh-hhheeeeeccCCCeE
Confidence 7887 9999999999999986 99999999999999998432 4456667788888888877 556689999999999
Q ss_pred EEEEcCCC
Q 016457 240 SIWDWKDG 247 (389)
Q Consensus 240 ~i~d~~~~ 247 (389)
.+|+++..
T Consensus 265 ~~w~mn~~ 272 (404)
T KOG1409|consen 265 VVWNMNVK 272 (404)
T ss_pred EEEeccce
Confidence 99998754
No 233
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.68 E-value=2.5e-14 Score=112.31 Aligned_cols=272 Identities=12% Similarity=0.004 Sum_probs=188.2
Q ss_pred CCeEEEEeCCCceeee--ee-cCCCCcEEEEEEeC---CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC------CCC
Q 016457 59 TNVVKLYSPVTGQYSG--EC-KGHSSTVNQISFSG---PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG------SQE 126 (389)
Q Consensus 59 d~~i~iw~~~~~~~~~--~~-~~~~~~v~~i~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~ 126 (389)
.|.+.+|++...+... .+ ..-+..+..+.|.. ++. -.++-+..+|.|.++..........+++- ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~-~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD-FNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCcc-ceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 4678899887665443 11 12345677788864 231 25677788999999987655444444432 123
Q ss_pred eEEEEEeCCCCeEEEeecCCeEEEEECcCCce--eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC
Q 016457 127 IFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ--VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD 204 (389)
Q Consensus 127 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 204 (389)
..++.|++.+..++++-.+|.+.+-+...... ++..+ .|..+.....|+...++++.+|+.|+.+..||+|...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--- 199 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--- 199 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---
Confidence 45788998888999998899999766554433 44676 8999999999999888999999999999999999321
Q ss_pred ccc-eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC-CceeEEeecccccccCCccCCCCCceeeecccCCCC
Q 016457 205 DLL-ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGE 282 (389)
Q Consensus 205 ~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 282 (389)
..+ .....|...|.++.-+|+.+.++++|+.|..|++||.++ ++++..-. -.+.|+.+.++|.-.
T Consensus 200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-------------v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-------------VGGGVWRIKHHPEIF 266 (339)
T ss_pred ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-------------cccceEEEEecchhh
Confidence 222 235568889999999999999999999999999999984 55554433 237899999998755
Q ss_pred eEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec-CCCeEE-EEeccC
Q 016457 283 NLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG-EDGRLC-CWLSDD 360 (389)
Q Consensus 283 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~-iW~~~~ 360 (389)
..+|+++-.+| .+|-+...+... +.. .......|..-+..- .|.....+|+|++ .|..++ +|-...
T Consensus 267 ~~lL~~CMh~G-~ki~~~~~~~~e-~~~-~~~s~~~hdSl~YG~---------DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 267 HRLLAACMHNG-AKILDSSDKVLE-FQI-VLPSDKIHDSLCYGG---------DWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred hHHHHHHHhcC-ceEEEecccccc-hhe-eeeccccccceeecc---------ccccccceeeeeeccccceeeeeeecc
Confidence 43566665665 677777655431 100 122233566555555 6655556788875 677755 786443
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.7e-13 Score=122.86 Aligned_cols=217 Identities=11% Similarity=0.015 Sum_probs=145.2
Q ss_pred eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec---CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457 61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS---DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD 137 (389)
Q Consensus 61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 137 (389)
.|.++|.+ +.....+..|...+...+|+|++ +.|+..+. +..|.+||+.+++.. .+..+...+...+|+|+++
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG--~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNR--QEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCC--CEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence 78899975 44455566788899999999999 67776653 468999999887654 3444556778899999999
Q ss_pred eEEEeec-CC--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC-CC--cEEEEecCCCCCCCccceeee
Q 016457 138 YLLAAGC-GS--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV-DG--LICTFDTGGDINDDDLLESVI 211 (389)
Q Consensus 138 ~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~ 211 (389)
.++.+.. ++ .|.+||+.+++. ..+. .+........|+|+++ .|+..+. +| .|+++|+.++. ...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt-~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~~-----~~~lt 330 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTT-TRLT-DSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGSN-----PRRIS 330 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCce-EEcc-CCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCCC-----eEEee
Confidence 8875543 44 588889887755 3454 4555677899999996 6666553 33 58888877432 23333
Q ss_pred ccCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457 212 NVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG 288 (389)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 288 (389)
.....+....|+ ++++.|+..+.+ ..|.+||+..+. ...+.. ...+....|+|||+.+++ +
T Consensus 331 ~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-------------~~~~~~p~~spDG~~i~~-~ 394 (435)
T PRK05137 331 FGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-------------GFLVEGPTWAPNGRVIMF-F 394 (435)
T ss_pred cCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-------------CCCCCCCeECCCCCEEEE-E
Confidence 334456678899 677777766543 368888875543 333321 123567889999984332 2
Q ss_pred ecCC-----ceEEEEEeccCCc
Q 016457 289 GTGA-----GTVGYFPVNYGGA 305 (389)
Q Consensus 289 g~~d-----g~i~i~~~~~~~~ 305 (389)
.... ..|+++++..+..
T Consensus 395 ~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 395 RQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EccCCCCCcceEEEEECCCCce
Confidence 2222 3577888766543
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=7.6e-14 Score=124.49 Aligned_cols=232 Identities=14% Similarity=0.092 Sum_probs=142.7
Q ss_pred CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC
Q 016457 60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136 (389)
Q Consensus 60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 136 (389)
..|.++|.. |.....+..+...+.+.+|+|++ +.|+..+.+ ..|.+||+.+++... +......+.+.+|+|++
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG--~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDG--TKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCC--CEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC
Confidence 367777764 54445555677889999999999 677766532 359999999887643 33334566789999999
Q ss_pred CeEEEe-ecCCeEEEE--ECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCCcEEEEecCCCCCCCccceeeec
Q 016457 137 DYLLAA-GCGSQIQFW--DWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDGLICTFDTGGDINDDDLLESVIN 212 (389)
Q Consensus 137 ~~l~~~-~~d~~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~ 212 (389)
+.++.+ +.++...+| |+..+. ...+. .+........|+|+|+ .|+..+ .++...+|.+.... .....+..
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~-~l~f~s~~~g~~~Iy~~~~~~---g~~~~lt~ 325 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGR-SIYFTSDRGGAPQIYRMPASG---GAAQRVTF 325 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCC-EEEEEecCCCCcEEEEEECCC---CceEEEec
Confidence 988764 457765555 444443 44554 3455567789999997 665544 35666666554211 11222222
Q ss_pred cCCceeeEEEecCCCcEEEEEecCC---cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe
Q 016457 213 VGTSVGKVGFFGETNKHLWCLTHIE---TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG 289 (389)
Q Consensus 213 ~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g 289 (389)
.........|+ +++++++..+.++ .|.+||+.+++... +... .......|+|+|+. |+..
T Consensus 326 ~g~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-------------~~~~~p~~spdg~~--l~~~ 388 (427)
T PRK02889 326 TGSYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-------------TRDESPSFAPNGRY--ILYA 388 (427)
T ss_pred CCCCcCceEEC-CCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-------------CCccCceECCCCCE--EEEE
Confidence 22334467898 6788887766554 69999998776432 3211 22356789999994 4443
Q ss_pred c-CCc--eEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457 290 T-GAG--TVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV 326 (389)
Q Consensus 290 ~-~dg--~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 326 (389)
+ ..| .+++.++. +.. ...+. .+.+.+...
T Consensus 389 ~~~~g~~~l~~~~~~-g~~------~~~l~-~~~g~~~~p 420 (427)
T PRK02889 389 TQQGGRSVLAAVSSD-GRI------KQRLS-VQGGDVREP 420 (427)
T ss_pred EecCCCEEEEEEECC-CCc------eEEee-cCCCCCCCC
Confidence 3 333 35555553 222 23343 455555555
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.3e-13 Score=123.54 Aligned_cols=217 Identities=12% Similarity=0.042 Sum_probs=146.6
Q ss_pred CCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEec---CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457 20 VNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLS---TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP 94 (389)
Q Consensus 20 ~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 94 (389)
...|.++|... ..+.+.. ...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|+++
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC-
Confidence 34788888753 3344444 778999999999999888764 468999999887653 3444566778899999994
Q ss_pred CEEEEEecCCe--EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C--CeEEEEECcCCceeeeeeecccCC
Q 016457 95 HVLHSCSSDGT--IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G--SQIQFWDWRNKKQVACLEESHVED 169 (389)
Q Consensus 95 ~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~ 169 (389)
.++++.+.++. |.+||+.+++.. .+..+........|+|++..++.++. + ..|+++|+..++. ..+. .+...
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt-~~~~~ 335 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRIS-FGGGR 335 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEee-cCCCc
Confidence 33456666665 777788776553 45555556778999999998887764 3 3688889876544 3443 24455
Q ss_pred eeEEEEecCCCCeEEEEeCC---CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC------CcEE
Q 016457 170 VTQVHFVPNNQNKVVSASVD---GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI------ETLS 240 (389)
Q Consensus 170 v~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~i~ 240 (389)
+....|+|+|+ .|+..+.+ ..|.+||+.++. ...+ .....+....|+ ++++.|+..+.+ ..|.
T Consensus 336 ~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~-----~~~l-t~~~~~~~p~~s-pDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 336 YSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG-----ERIL-TSGFLVEGPTWA-PNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred ccCeEECCCCC-EEEEEEcCCCceEEEEEECCCCc-----eEec-cCCCCCCCCeEC-CCCCEEEEEEccCCCCCcceEE
Confidence 67789999996 77665543 358888876432 1111 122346778999 677776655442 2577
Q ss_pred EEEcCCCce
Q 016457 241 IWDWKDGQN 249 (389)
Q Consensus 241 i~d~~~~~~ 249 (389)
++|+..+..
T Consensus 408 ~~dl~g~~~ 416 (435)
T PRK05137 408 TVDLTGRNE 416 (435)
T ss_pred EEECCCCce
Confidence 888765443
No 237
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.65 E-value=1.8e-13 Score=109.31 Aligned_cols=280 Identities=15% Similarity=0.127 Sum_probs=191.5
Q ss_pred CcceEEEeecCCCCeEEEE-ecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457 38 DDYVFEIVPKNDWSLMAVS-LSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 116 (389)
-+.|.-+.|.-|..+++++ ..++.|.+|++...+-...+..-..++.+++|+|+|. ..|.+...|-.|.+|.+.+.+.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcc-eEeeeecceeEEEEEEecccee
Confidence 5677788899888665554 5588999999998888888888888999999999996 6788888999999999987655
Q ss_pred EEEEEcCCCCeEEEEEeCCCCeEEEeec-C-----------------------------------CeEEEEECcCCceee
Q 016457 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGC-G-----------------------------------SQIQFWDWRNKKQVA 160 (389)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----------------------------------~~i~iwd~~~~~~~~ 160 (389)
.. ++-.+..+..++|+|++++.+..+. | ..+.+||.--.-.+.
T Consensus 127 ~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 127 YL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred EE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence 43 3334667788999988877665543 2 233444422111222
Q ss_pred eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC--------------------------------------
Q 016457 161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN-------------------------------------- 202 (389)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------------------------------- 202 (389)
.+. ..-.+..++|+|.++ +|+.|+.|+.+++.+--+.+.
T Consensus 206 aYe--~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~ 282 (447)
T KOG4497|consen 206 AYE--RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT 282 (447)
T ss_pred eee--eccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC
Confidence 222 335688899999986 999999999988765321100
Q ss_pred --------CC----------------ccceeeeccCCceeeEEEecCCCcEEEEEecC--CcEEEEEcCCCceeEEeecc
Q 016457 203 --------DD----------------DLLESVINVGTSVGKVGFFGETNKHLWCLTHI--ETLSIWDWKDGQNVASFENA 256 (389)
Q Consensus 203 --------~~----------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~ 256 (389)
.. ++........-.+..++|+ ++..++++-... +.+-+||++..+....+.
T Consensus 283 ~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs-~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-- 359 (447)
T KOG4497|consen 283 DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS-CDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-- 359 (447)
T ss_pred ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec-CCceEEeeecCCCCceEEEEechhhhhhhhhh--
Confidence 00 0000001112245678898 676666665443 478999998776655544
Q ss_pred cccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCC
Q 016457 257 RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRP 336 (389)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 336 (389)
...+|....|.|...++.+.+|+ ..+++|....... ...+ +..-.|..+ .
T Consensus 360 -----------Qk~piraf~WdP~~prL~vctg~--srLY~W~psg~~~-------V~vP-~~GF~i~~l---------~ 409 (447)
T KOG4497|consen 360 -----------QKHPIRAFEWDPGRPRLVVCTGK--SRLYFWAPSGPRV-------VGVP-KKGFNIQKL---------Q 409 (447)
T ss_pred -----------hccceeEEEeCCCCceEEEEcCC--ceEEEEcCCCceE-------EecC-CCCceeeeE---------E
Confidence 33789999999988876555554 4699998775432 2222 344677778 8
Q ss_pred CCCCceeEEEecCCCeEEE
Q 016457 337 AQSHGIFGWTGGEDGRLCC 355 (389)
Q Consensus 337 ~s~~~~~l~s~~~dg~v~i 355 (389)
|..+|.+|+-.+.|....-
T Consensus 410 W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 410 WLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred ecCCCcEEEEEcCCceEEE
Confidence 8999999999999975443
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.1e-13 Score=123.43 Aligned_cols=233 Identities=12% Similarity=0.037 Sum_probs=148.0
Q ss_pred CCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457 20 VNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP 94 (389)
Q Consensus 20 ~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 94 (389)
...|.++|... ..+.+.. ...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|++
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG-- 251 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDG-- 251 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC--
Confidence 34677777643 3333434 6788999999999999887643 469999999886543 33334556789999999
Q ss_pred CEEE-EEecCCeEEEEEc--cCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEEC--cCCceeeeeeecccC
Q 016457 95 HVLH-SCSSDGTIRAWDT--RSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDW--RNKKQVACLEESHVE 168 (389)
Q Consensus 95 ~~l~-s~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~--~~~~~~~~~~~~~~~ 168 (389)
+.|+ +.+.+|...||.+ ..+. ...+..+........|+|++..++.++. ++...+|.+ .+++. ..+. ....
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt-~~g~ 328 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVT-FTGS 328 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEe-cCCC
Confidence 4555 6677887777654 3333 4445545555677899999998887665 455566654 44433 2222 1233
Q ss_pred CeeEEEEecCCCCeEEEEeCCC---cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC---cEEEE
Q 016457 169 DVTQVHFVPNNQNKVVSASVDG---LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE---TLSIW 242 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~ 242 (389)
......|+|+|+ .|+..+.++ .|.+||+.++. ...+. .........|+ ++++.|+..+.++ .+.+.
T Consensus 329 ~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~-----~~~lt-~~~~~~~p~~s-pdg~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 329 YNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQ-----VTALT-DTTRDESPSFA-PNGRYILYATQQGGRSVLAAV 400 (427)
T ss_pred CcCceEECCCCC-EEEEEEccCCcEEEEEEECCCCC-----eEEcc-CCCCccCceEC-CCCCEEEEEEecCCCEEEEEE
Confidence 345688999996 777666544 59999998653 12222 12234677899 6777766666543 35555
Q ss_pred EcCCCceeEEeecccccccCCccCCCCCceeeecccC
Q 016457 243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG 279 (389)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (389)
++ ++.....+.. +.+.+...+|+|
T Consensus 401 ~~-~g~~~~~l~~------------~~g~~~~p~wsp 424 (427)
T PRK02889 401 SS-DGRIKQRLSV------------QGGDVREPSWGP 424 (427)
T ss_pred EC-CCCceEEeec------------CCCCCCCCccCC
Confidence 65 3555544443 235566677776
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.65 E-value=3e-14 Score=112.00 Aligned_cols=148 Identities=18% Similarity=0.310 Sum_probs=110.0
Q ss_pred EEeecCCCCeEEEEec----------CCeEEEEeCCC-ceeeeeecC-CCCcEEEEEEeCCCCCCEEEE--EecCCeEEE
Q 016457 43 EIVPKNDWSLMAVSLS----------TNVVKLYSPVT-GQYSGECKG-HSSTVNQISFSGPSTPHVLHS--CSSDGTIRA 108 (389)
Q Consensus 43 ~~~~~~~~~~l~~~~~----------d~~i~iw~~~~-~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s--~~~dg~i~i 108 (389)
.+.|+|+|++|++-.. -+...||-++. +.....+.- ..++|.+++|+|++ +.++. |..++.|.+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g--~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG--NEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCC--CEEEEEEccCCcccEE
Confidence 5779999987776544 12355555422 233444432 34579999999999 45543 446789999
Q ss_pred EEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457 109 WDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS 185 (389)
Q Consensus 109 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 185 (389)
||++ ++.+..+. ...+..+.|+|+|+.+++++. .|.|.+||.++.+.+.+.. |. .++.++|+|+|+ +|++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr-~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSPDGR-YLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcCCCC-EEEE
Confidence 9996 66666664 467889999999999999885 4779999999888887775 44 478999999997 7777
Q ss_pred EeC------CCcEEEEecCC
Q 016457 186 ASV------DGLICTFDTGG 199 (389)
Q Consensus 186 ~~~------d~~i~i~d~~~ 199 (389)
++. |+.++||+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEeccceeccccEEEEEecC
Confidence 764 78899999874
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.3e-13 Score=117.61 Aligned_cols=281 Identities=14% Similarity=0.111 Sum_probs=177.2
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEE-----ecC-----CeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSC-----SSD-----GTIR 107 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-----~~d-----g~i~ 107 (389)
...++..+++++|+++|.+. +..+.|++..++..+.+.... .+.++.|+|-+ .+|.+= ..+ -.+.
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g--~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKG--NYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccc--cccccccccccccCCCCCCCcee
Confidence 34467888999998888776 778999999888654444422 78999999998 677662 122 3477
Q ss_pred EEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCC-CeEEE-
Q 016457 108 AWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ-NKVVS- 185 (389)
Q Consensus 108 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~- 185 (389)
+|++.++.....+......-++..|+++ ..+++=-..+.+++|++...+.+..- -|...|+.+.++|... ..+++
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~d-Esl~arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvy 185 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSID-ESLAARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVY 185 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccc-hhhhhhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEE
Confidence 9999986666555544333368888844 34443333578888887764433222 2455566666666522 12222
Q ss_pred ----EeCCCcEEEEecCCCCC-------------------------------------------C---------Ccccee
Q 016457 186 ----ASVDGLICTFDTGGDIN-------------------------------------------D---------DDLLES 209 (389)
Q Consensus 186 ----~~~d~~i~i~d~~~~~~-------------------------------------------~---------~~~~~~ 209 (389)
.+.-+.|+||...-... + ......
T Consensus 186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred ccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 12223344444330000 0 001111
Q ss_pred eeccCCceeeEEEecCCCcEEE-EEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457 210 VINVGTSVGKVGFFGETNKHLW-CLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG 288 (389)
Q Consensus 210 ~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 288 (389)
-....++|.++.|++...++.+ -|-+=..+.|||++ +.++..+.. ++-.++-|+|.|+ +|+.
T Consensus 266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e--------------gpRN~~~fnp~g~--ii~l 328 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE--------------GPRNTAFFNPHGN--IILL 328 (566)
T ss_pred ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC--------------CCccceEECCCCC--EEEE
Confidence 1223579999999944333433 33445689999986 777777765 6667889999998 5554
Q ss_pred ecC---CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec------CCCeEEEEecc
Q 016457 289 GTG---AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG------EDGRLCCWLSD 359 (389)
Q Consensus 289 g~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~------~dg~v~iW~~~ 359 (389)
++. -|.|-|||+.+.++ +..+. .-. ..++ .|+|||++++|++ .|+.++||+..
T Consensus 329 AGFGNL~G~mEvwDv~n~K~------i~~~~-a~~---tt~~--------eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 329 AGFGNLPGDMEVWDVPNRKL------IAKFK-AAN---TTVF--------EWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred eecCCCCCceEEEeccchhh------ccccc-cCC---ceEE--------EEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 443 38999999998665 34333 111 2222 8999999999986 57889999998
Q ss_pred CC
Q 016457 360 DS 361 (389)
Q Consensus 360 ~~ 361 (389)
..
T Consensus 391 G~ 392 (566)
T KOG2315|consen 391 GS 392 (566)
T ss_pred Cc
Confidence 76
No 241
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.64 E-value=2.1e-13 Score=117.05 Aligned_cols=187 Identities=15% Similarity=0.093 Sum_probs=151.9
Q ss_pred CCCCCccccCCCCeEEEEecCc-ee-eeeec----CcceEEEee--------------------cCCCCeEEEEecCCeE
Q 016457 9 QSQPKSQSCDNVNSIKRFGLKN-SI-QTNFG----DDYVFEIVP--------------------KNDWSLMAVSLSTNVV 62 (389)
Q Consensus 9 ~~~~~~~s~~~~~~i~~w~~~~-~~-~~~~~----~~~v~~~~~--------------------~~~~~~l~~~~~d~~i 62 (389)
++....|....||.+++|++.+ .+ ..+.. .+...+..| +.|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3445788899999999999852 22 22221 333444443 2234478888889999
Q ss_pred EEEeCCCceeeeeec--CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEE
Q 016457 63 KLYSPVTGQYSGECK--GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLL 140 (389)
Q Consensus 63 ~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 140 (389)
.+|++..|+....+. .|.+.|.++.++.+- ..|.|++.|+.+..|+....+.++.++..+..+.+++.+|++..++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 999999999887775 599999999998777 6999999999999999999999999999999999999999988888
Q ss_pred EeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecC-----CCCeEEEEeCCCcEEEEecCCC
Q 016457 141 AAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN-----NQNKVVSASVDGLICTFDTGGD 200 (389)
Q Consensus 141 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~ 200 (389)
+++ +.|++||+++++.+.+|. +|.++|+++.|.-. |..+|.+...+..+.+|-....
T Consensus 161 ~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred ecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 877 699999999999999999 99999999999877 5545555666777888888753
No 242
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=1.1e-14 Score=127.90 Aligned_cols=303 Identities=15% Similarity=0.132 Sum_probs=209.0
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc-eeeeeecCCC--CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC-
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-QYSGECKGHS--STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS- 113 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~--~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~- 113 (389)
.+++.++..+|.|+-+|.++.-| +.+.|+... .+..-+. |. -.|-.+.|+|.....+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 67888999999999999998776 556666542 3322222 32 246677888765434444444444566899863
Q ss_pred --CeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCc-eeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457 114 --FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKVVSASVD 189 (389)
Q Consensus 114 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 189 (389)
......+.+|...|+.+.|+|+..-+++.+. |..+..||+++.. ++.... .-...-..++|+-..+ .+++.+..
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p-~vlasshg 179 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDP-NVLASSHG 179 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCc-chhhhccC
Confidence 3344567788999999999998887777665 9999999999864 455555 4456678899998887 44445567
Q ss_pred CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee--EEeecccccccCCccCC
Q 016457 190 GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV--ASFENARSLASDSWTLD 267 (389)
Q Consensus 190 ~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~ 267 (389)
+.|.+||++.+. .++..+.+|-..|..+.|.......+++.+.|++|++||....... +...
T Consensus 180 ~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt------------- 243 (1081)
T KOG0309|consen 180 NDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT------------- 243 (1081)
T ss_pred CceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-------------
Confidence 789999999553 6677777788889999987555667999999999999998754322 2221
Q ss_pred CCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc----cccCCCeEEEecccceeeeec-cCCCcccCCCCCCCce
Q 016457 268 DVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA----ATIGPPEAVLVGGHTAVVRSV-LPMPSVQGRPAQSHGI 342 (389)
Q Consensus 268 ~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~s~~~~ 342 (389)
...+++.-.+.|-|+..++.---.+..+.+++-+.... ....+++..+. ||++.|... |.....-...+....-
T Consensus 244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~-GH~D~V~eFlWR~r~e~~~d~d~rdf 322 (1081)
T KOG0309|consen 244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV-GHDDVVLEFLWRKRKECDGDYDSRDF 322 (1081)
T ss_pred ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec-CcchHHHHHhhhhcccccCCCCccce
Confidence 23677888888888765443332233455554433221 11345678887 999988887 4333333114444455
Q ss_pred eEEEecCCCeEEEEeccCC
Q 016457 343 FGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 343 ~l~s~~~dg~v~iW~~~~~ 361 (389)
.|+|-+.|..+|+|.++..
T Consensus 323 QLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 323 QLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred eEEEeecCCceEeeeccHH
Confidence 7999999999999999865
No 243
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.63 E-value=1e-11 Score=105.05 Aligned_cols=270 Identities=11% Similarity=0.123 Sum_probs=171.5
Q ss_pred CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEE-e---------cCCeEEEEEccCCeEEEEEEcCCC----
Q 016457 60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSC-S---------SDGTIRAWDTRSFHEVWSVTAGSQ---- 125 (389)
Q Consensus 60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-~---------~dg~i~iwd~~~~~~~~~~~~~~~---- 125 (389)
++|.+.|..+++.+..+..-..+- .+ ++|++ +.|+.+ + .+..|.+||+.+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg--~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDG--SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCC--CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 789999999999988886533333 24 99998 455554 4 478999999999999998886422
Q ss_pred ---CeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCC
Q 016457 126 ---EIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGD 200 (389)
Q Consensus 126 ---~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 200 (389)
....++++|+++.+++... +..|.+.|+.+++.+.++.- .....-...++.. +.+-+.||......+...
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDT---FFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCc---cEEEeecCceEEEEecCC
Confidence 2347899999999998774 79999999999999998872 2222222222221 223334565555444422
Q ss_pred CCCCccceeeecc-CCcee-eEEEecCCCcEEEEEecCCcEEEEEcCCCc-----eeEEeecccccccCCccCCCCCcee
Q 016457 201 INDDDLLESVINV-GTSVG-KVGFFGETNKHLWCLTHIETLSIWDWKDGQ-----NVASFENARSLASDSWTLDDVDYFV 273 (389)
Q Consensus 201 ~~~~~~~~~~~~~-~~~i~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (389)
.........+... ..++. .-.|.+.++.++++... |+|.+.|+.... ....+.... ....|.. ....
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~--~~~~wrP---~g~q 251 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE--KADGWRP---GGWQ 251 (352)
T ss_pred CceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccc--cccccCC---Ccce
Confidence 1100000011101 00110 00445447777777777 999999965432 222221110 0112322 3334
Q ss_pred eecccCCCCeEEEEEecC--------CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce-eE
Q 016457 274 DCHYPGEGENLWVIGGTG--------AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI-FG 344 (389)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~--------dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~-~l 344 (389)
-++++++++++|++.-.. .+.|.++|..+++. +..+..+ ..+..+ +++||++ +|
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv------i~~i~vG--~~~~~i---------avS~Dgkp~l 314 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR------LRKIELG--HEIDSI---------NVSQDAKPLL 314 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE------EEEEeCC--CceeeE---------EECCCCCeEE
Confidence 499999999877744222 25899999998876 6666644 367788 9999999 77
Q ss_pred EEec-CCCeEEEEeccCC
Q 016457 345 WTGG-EDGRLCCWLSDDS 361 (389)
Q Consensus 345 ~s~~-~dg~v~iW~~~~~ 361 (389)
++.. .++.|.+.|....
T Consensus 315 yvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEeCCCCCcEEEEECcCC
Confidence 7665 6888999998876
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=2.2e-11 Score=105.65 Aligned_cols=284 Identities=13% Similarity=0.218 Sum_probs=173.8
Q ss_pred EEEEecC----CeEEEEeC--CCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEec----CCeEEEEEccCC----eE
Q 016457 53 MAVSLST----NVVKLYSP--VTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSS----DGTIRAWDTRSF----HE 116 (389)
Q Consensus 53 l~~~~~d----~~i~iw~~--~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~----dg~i~iwd~~~~----~~ 116 (389)
+++|+.. +.|.+|++ +++++. .... .......++++|++ ++|.+... ++.|..|.+... +.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~--~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDG--RRLYVVNEGSGDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTS--SEEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCC--CEEEEEEccccCCCCEEEEEECCCcceeEE
Confidence 4455554 68888887 444432 2222 34456778999998 68888776 578999988764 33
Q ss_pred EEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcC-Cceeee---eee---------cccCCeeEEEEecCCCCe
Q 016457 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRN-KKQVAC---LEE---------SHVEDVTQVHFVPNNQNK 182 (389)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~~~~---~~~---------~~~~~v~~~~~~~~~~~~ 182 (389)
+............++++|++.+++++.. +|.|.++++.. +..... +.. .......++.++|+++ +
T Consensus 79 ~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~-~ 157 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR-F 157 (345)
T ss_dssp EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS-E
T ss_pred eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC-E
Confidence 4444434566778999999999999886 89999999986 332221 210 1124578999999996 5
Q ss_pred EEEE-eCCCcEEEEecCCCCCCCcccee-eeccCCceeeEEEecCCCcEEEEEe-cCCcEEEEEcC--CCceeEEeeccc
Q 016457 183 VVSA-SVDGLICTFDTGGDINDDDLLES-VINVGTSVGKVGFFGETNKHLWCLT-HIETLSIWDWK--DGQNVASFENAR 257 (389)
Q Consensus 183 l~~~-~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~~~~~~~~~~~ 257 (389)
+++. -....|.+|++............ ..........++|+ ++++++++.. .++.|.+|++. ++. +.......
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~-~~~~~~~~ 235 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGS-LTEIQTIS 235 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTE-EEEEEEEE
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc-CCcCEEEEecCCCCcEEEEeecccCCc-eeEEEEee
Confidence 5554 34557999999854311111122 22455678899999 5666665554 56789999988 342 22222111
Q ss_pred ccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc--CCccccCCCeEEEecccceeeeeccCCCcccCC
Q 016457 258 SLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY--GGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGR 335 (389)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 335 (389)
.+.. .+ ........+.++|+|+.+| ++......|.+|++.. +++ +.+..+. .....-+.+
T Consensus 236 ~~~~-~~--~~~~~~~~i~ispdg~~ly-vsnr~~~sI~vf~~d~~~g~l----~~~~~~~-~~G~~Pr~~--------- 297 (345)
T PF10282_consen 236 TLPE-GF--TGENAPAEIAISPDGRFLY-VSNRGSNSISVFDLDPATGTL----TLVQTVP-TGGKFPRHF--------- 297 (345)
T ss_dssp SCET-TS--CSSSSEEEEEE-TTSSEEE-EEECTTTEEEEEEECTTTTTE----EEEEEEE-ESSSSEEEE---------
T ss_pred eccc-cc--cccCCceeEEEecCCCEEE-EEeccCCEEEEEEEecCCCce----EEEEEEe-CCCCCccEE---------
Confidence 1111 00 1223678899999999543 3444577899999943 333 1112222 112224555
Q ss_pred CCCCCceeEEEec-CCCeEEEEeccC
Q 016457 336 PAQSHGIFGWTGG-EDGRLCCWLSDD 360 (389)
Q Consensus 336 ~~s~~~~~l~s~~-~dg~v~iW~~~~ 360 (389)
+++|+|++|+++. .++.|.+|+++.
T Consensus 298 ~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 8999999988775 677999999874
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=1.1e-13 Score=126.09 Aligned_cols=265 Identities=12% Similarity=0.097 Sum_probs=183.6
Q ss_pred CeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCC----CCEEEEEecCCeEEEEEccCCeEEEEEEcCCC
Q 016457 51 SLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPST----PHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ 125 (389)
Q Consensus 51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 125 (389)
++|+.|. .-.|.+||+..+..+..+.. +-..+. .+.+. +.+++++..-+.+..=+.. .+....+ ..
T Consensus 18 ~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~-~~~~~~~---s~ 88 (967)
T KOG0974|consen 18 DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEAS-NQIIERF---SD 88 (967)
T ss_pred ceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchh-hhhhhhc---cc
Confidence 4666554 56799999988866544421 111111 11110 0255555544444332221 1111122 22
Q ss_pred CeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCe--eE---EEEecCCCCeEEEEeCCCcEEEEecCCC
Q 016457 126 EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV--TQ---VHFVPNNQNKVVSASVDGLICTFDTGGD 200 (389)
Q Consensus 126 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v--~~---~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 200 (389)
.|....+...+..++.+..++.+.+||...+.....+. +.... .+ +.++++. -++++|+.-+.|.+|+...
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~- 164 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHE- 164 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccc-
Confidence 33334444477888888889999999998887777665 33221 12 2344554 4899999999999999982
Q ss_pred CCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE-EeecccccccCCccCCCCCceeeecccC
Q 016457 201 INDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA-SFENARSLASDSWTLDDVDYFVDCHYPG 279 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (389)
......+.+|++.|.++.++ .++.++++.++|.++++|++.+.+... ... +|+..++.++|.|
T Consensus 165 ---dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f------------gHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 165 ---DNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPIDSREVLGCTGF------------GHSARVWACCFLP 228 (967)
T ss_pred ---cCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeecccccccCcccc------------cccceeEEEEecc
Confidence 22233788999999999999 899999999999999999999887665 222 3889999999999
Q ss_pred CCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc-eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457 280 EGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT-AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS 358 (389)
Q Consensus 280 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~ 358 (389)
+ .+++++.|.+.++|+....++ ..+. +|. ..|..+ +..++...++|++.||.+++|++
T Consensus 229 n----~i~t~gedctcrvW~~~~~~l-------~~y~-~h~g~~iw~~---------~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 229 N----RIITVGEDCTCRVWGVNGTQL-------EVYD-EHSGKGIWKI---------AVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred c----eeEEeccceEEEEEeccccee-------hhhh-hhhhcceeEE---------EEcCCceEEEeeccCcchhhhhh
Confidence 7 579999999999997776554 4444 675 677888 77778888999999999999999
Q ss_pred cCCcccc
Q 016457 359 DDSSEIN 365 (389)
Q Consensus 359 ~~~~~~~ 365 (389)
.....+.
T Consensus 288 ~~r~~e~ 294 (967)
T KOG0974|consen 288 NGRGLEG 294 (967)
T ss_pred hcccccc
Confidence 8774433
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.58 E-value=4.9e-12 Score=113.56 Aligned_cols=212 Identities=12% Similarity=0.088 Sum_probs=138.7
Q ss_pred eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457 61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD 137 (389)
Q Consensus 61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 137 (389)
.|.++|...+ ....+..+...+...+|+|++ +.|+.+..+ ..|.+||+.+++... +..+...+.+++|+|+++
T Consensus 171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg--~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 171 ELQVADYDGA-NPQTITRSREPILSPAWSPDG--QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred eEEEEcCCCC-CCEEeecCCCceecccCCCCC--CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 6888887643 344455566778999999999 677776543 479999998876543 333445677899999998
Q ss_pred eEEEeec-C--CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC-CC--cEEEEecCCCCCCCccceeee
Q 016457 138 YLLAAGC-G--SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV-DG--LICTFDTGGDINDDDLLESVI 211 (389)
Q Consensus 138 ~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~ 211 (389)
.++.+.. + ..|++||+.++... .+. .+........|+|+++ .|+..+. ++ .|+++|+.++. ...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~s~dg~-~l~~~s~~~g~~~iy~~d~~~~~-----~~~l~ 318 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLT-RLT-NGPGIDTEPSWSPDGK-SIAFTSDRGGSPQIYMMDADGGE-----VRRLT 318 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEE-ECC-CCCCCCCCEEECCCCC-EEEEEECCCCCceEEEEECCCCC-----EEEee
Confidence 8876543 3 46899998876543 333 3444556789999996 6665543 33 57777877432 23333
Q ss_pred ccCCceeeEEEecCCCcEEEEEecCC---cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457 212 NVGTSVGKVGFFGETNKHLWCLTHIE---TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG 288 (389)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 288 (389)
..........|+ +++++++.++.++ .|.+||+.++... .+... .......|+|+|+ +|+.
T Consensus 319 ~~~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-------------~~~~~p~~spdg~--~l~~ 381 (417)
T TIGR02800 319 FRGGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-------------GLDESPSFAPNGR--MILY 381 (417)
T ss_pred cCCCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-------------CCCCCceECCCCC--EEEE
Confidence 345566778898 6777888777765 7889998875432 22211 2234567999998 4444
Q ss_pred ecCCc---eEEEEEec
Q 016457 289 GTGAG---TVGYFPVN 301 (389)
Q Consensus 289 g~~dg---~i~i~~~~ 301 (389)
.+.++ .+++.+..
T Consensus 382 ~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 382 ATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEeCCCcEEEEEEECC
Confidence 44432 34555443
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.57 E-value=2.6e-12 Score=101.20 Aligned_cols=264 Identities=14% Similarity=0.128 Sum_probs=177.4
Q ss_pred CCCeEEEEecCc----eeeeeec--CcceEEEeecC---CCC-eEEEEecCCeEEEEeCCCceeeeeecCCC------Cc
Q 016457 19 NVNSIKRFGLKN----SIQTNFG--DDYVFEIVPKN---DWS-LMAVSLSTNVVKLYSPVTGQYSGECKGHS------ST 82 (389)
Q Consensus 19 ~~~~i~~w~~~~----~~~~~~~--~~~v~~~~~~~---~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~------~~ 82 (389)
.-|.+.+|+++. +..+++. ...++.|.|.. +|. .++-+-..|.|.++..........+++-. ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 456788888752 2333433 67788888864 444 56666778999999865444444443311 12
Q ss_pred EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE--EEEEcCCCCeEEEEEeCCCC-eEEEeecCCeEEEEECc-CCce
Q 016457 83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV--WSVTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWR-NKKQ 158 (389)
Q Consensus 83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~-~~~~ 158 (389)
..++.|++.+ ..++++..+|.+.+-+....... +.++.|..+++-..|+...+ .+++||.|+.+..||+| .++.
T Consensus 124 ~lslD~~~~~--~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 124 ALSLDISTSG--TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eeEEEeeccC--ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 4577898888 68999999999987666655443 48899999999999986555 45667779999999999 3444
Q ss_pred eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCc
Q 016457 159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIET 238 (389)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 238 (389)
+.+-..-|...|.+|.-+|..+..+++|+.|-.|++||.|+- .+++.. ....+.|..+..+|.....++.++.-+-
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm---~kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM---GKPLFK-AKVGGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc---cCcccc-CccccceEEEEecchhhhHHHHHHHhcC
Confidence 544233688999999999887789999999999999999942 233322 2345789999999766555555555555
Q ss_pred EEEEEcCCCcee-----EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec-CCceEE-EEEecc
Q 016457 239 LSIWDWKDGQNV-----ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT-GAGTVG-YFPVNY 302 (389)
Q Consensus 239 i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~-~dg~i~-i~~~~~ 302 (389)
.+|-+...+... ..+.. |..-+..-.|..... +|++++ .|..++ +|-.-+
T Consensus 278 ~ki~~~~~~~~e~~~~~~s~~~------------hdSl~YG~DWd~~~~--~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 278 AKILDSSDKVLEFQIVLPSDKI------------HDSLCYGGDWDSKDS--FLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ceEEEecccccchheeeecccc------------ccceeeccccccccc--eeeeeeccccceeeeeeecc
Confidence 677776654222 22222 556666666744333 677754 455544 664443
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=6.4e-13 Score=104.49 Aligned_cols=151 Identities=15% Similarity=0.252 Sum_probs=107.6
Q ss_pred EEEEEeCCCCeEEEeec----------CCeEEEEECcC-CceeeeeeecccCCeeEEEEecCCCCeEEE--EeCCCcEEE
Q 016457 128 FCFSFGGSTDYLLAAGC----------GSQIQFWDWRN-KKQVACLEESHVEDVTQVHFVPNNQNKVVS--ASVDGLICT 194 (389)
Q Consensus 128 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~d~~i~i 194 (389)
..+.|+|.|..|++-.. -+...+|.++. ...+..+.....++|.+++|+|++. .|++ |..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~-~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGN-EFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCC-EEEEEEccCCcccEE
Confidence 35778888888776544 13456666643 2344444423456799999999996 6544 345779999
Q ss_pred EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccCCccCCCCCc
Q 016457 195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDY 271 (389)
Q Consensus 195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (389)
||++. ..+..+ ....+..+.|+ |+|++|++++.+ |.|.+||.++.+.+..+.. ..
T Consensus 88 yd~~~-----~~i~~~--~~~~~n~i~ws-P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--------------~~ 145 (194)
T PF08662_consen 88 YDVKG-----KKIFSF--GTQPRNTISWS-PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--------------SD 145 (194)
T ss_pred EcCcc-----cEeEee--cCCCceEEEEC-CCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--------------Cc
Confidence 99972 223333 34577899999 788899888754 5799999998888877653 44
Q ss_pred eeeecccCCCCeEEEEEecC------CceEEEEEeccC
Q 016457 272 FVDCHYPGEGENLWVIGGTG------AGTVGYFPVNYG 303 (389)
Q Consensus 272 i~~~~~~~~~~~~~l~~g~~------dg~i~i~~~~~~ 303 (389)
+..++|+|+|+ ++++++. |..++||+....
T Consensus 146 ~t~~~WsPdGr--~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 146 ATDVEWSPDGR--YLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEEcCCCC--EEEEEEeccceeccccEEEEEecCe
Confidence 78999999999 7776653 688999999743
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=7.1e-12 Score=112.52 Aligned_cols=219 Identities=16% Similarity=0.056 Sum_probs=143.3
Q ss_pred CCeEEEEecC-ceeeeeec-CcceEEEeecCCCCeEEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457 20 VNSIKRFGLK-NSIQTNFG-DDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP 94 (389)
Q Consensus 20 ~~~i~~w~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 94 (389)
...|.++|.. ...+.+.. ...+...+|+|||++|+.+... ..|++||+.+++... +..+...+.+++|+|++
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg-- 245 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDG-- 245 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC--
Confidence 4467777764 33444444 6678899999999999987654 489999998875443 33355667789999998
Q ss_pred CEEE-EEecCC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C--CeEEEEECcCCceeeeeeecccC
Q 016457 95 HVLH-SCSSDG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G--SQIQFWDWRNKKQVACLEESHVE 168 (389)
Q Consensus 95 ~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~ 168 (389)
+.|+ +.+.++ .|.+||+.++... .+..+........|+|++..++.++. + ..|.++|+.+++.. .+. .+..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~-~~~~ 322 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT-FRGG 322 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee-cCCC
Confidence 4554 555444 5888898876543 33334444557789999998887665 3 36888888766543 343 3456
Q ss_pred CeeEEEEecCCCCeEEEEeCCC---cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC---cEEEE
Q 016457 169 DVTQVHFVPNNQNKVVSASVDG---LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE---TLSIW 242 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~ 242 (389)
.+..+.|+|++. .++.++.++ .|.+||+.++. ...+. .........|+ +++..|+..+.++ .+.+.
T Consensus 323 ~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~-----~~~l~-~~~~~~~p~~s-pdg~~l~~~~~~~~~~~l~~~ 394 (417)
T TIGR02800 323 YNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG-----ERVLT-DTGLDESPSFA-PNGRMILYATTRGGRGVLGLV 394 (417)
T ss_pred CccCeEECCCCC-EEEEEEccCCceEEEEEeCCCCC-----eEEcc-CCCCCCCceEC-CCCCEEEEEEeCCCcEEEEEE
Confidence 677889999996 777777665 78899988532 11111 12233456788 6666666665543 45555
Q ss_pred EcCCCceeEEe
Q 016457 243 DWKDGQNVASF 253 (389)
Q Consensus 243 d~~~~~~~~~~ 253 (389)
+.. ++....+
T Consensus 395 ~~~-g~~~~~~ 404 (417)
T TIGR02800 395 STD-GRFRARL 404 (417)
T ss_pred ECC-CceeeEC
Confidence 533 4444444
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=8.1e-12 Score=114.22 Aligned_cols=180 Identities=18% Similarity=0.187 Sum_probs=142.3
Q ss_pred CccccCCCCeEEEEecCce--eeeeecCc-----ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE
Q 016457 13 KSQSCDNVNSIKRFGLKNS--IQTNFGDD-----YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ 85 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~~~--~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~ 85 (389)
..+....++.+.+|+.... ...+.+.+ ...-+-++++.-++++|+.-+.|.+|++...+.-..+.+|.+.|.+
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~ 180 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFS 180 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEE
Confidence 4555667778888887642 22222211 1222335667779999999999999998743333368899999999
Q ss_pred EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE-EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457 86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW-SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE 164 (389)
Q Consensus 86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 164 (389)
+.|+.++ .++++.+.|.++|+|++.+.+... ..-+|...|+.+.|.|+ .+++++.|.+.++|+.. +..+..+.
T Consensus 181 i~~s~dg--~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~- 254 (967)
T KOG0974|consen 181 IVTSLDG--RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYD- 254 (967)
T ss_pred EEEccCC--cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhh-
Confidence 9999999 799999999999999999988776 67789999999999966 99999999999999754 55555666
Q ss_pred cc-cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457 165 SH-VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG 199 (389)
Q Consensus 165 ~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (389)
.| ...+..++..+... ++++++.|+.+++||+.+
T Consensus 255 ~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 255 EHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence 44 45799999999885 999999999999999874
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=3.1e-10 Score=98.47 Aligned_cols=266 Identities=12% Similarity=0.170 Sum_probs=171.2
Q ss_pred CCCeEEEEecCc---ee---eeeecCcceEEEeecCCCCeEEEEec----CCeEEEEeCCC--ce--eeeeecCCCCcEE
Q 016457 19 NVNSIKRFGLKN---SI---QTNFGDDYVFEIVPKNDWSLMAVSLS----TNVVKLYSPVT--GQ--YSGECKGHSSTVN 84 (389)
Q Consensus 19 ~~~~i~~w~~~~---~~---~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iw~~~~--~~--~~~~~~~~~~~v~ 84 (389)
..+.|..|++.. .+ ...........++++|++++|++... ++.|..|.+.. ++ .+...........
T Consensus 11 ~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~ 90 (345)
T PF10282_consen 11 KGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC 90 (345)
T ss_dssp SSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred CCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence 447888888731 22 22222566678899999999999876 46899998765 33 3333332344556
Q ss_pred EEEEeCCCCCCEEEEEe-cCCeEEEEEccC-CeEEEE---EE----------cCCCCeEEEEEeCCCCeEEEeec-CCeE
Q 016457 85 QISFSGPSTPHVLHSCS-SDGTIRAWDTRS-FHEVWS---VT----------AGSQEIFCFSFGGSTDYLLAAGC-GSQI 148 (389)
Q Consensus 85 ~i~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~~-d~~i 148 (389)
.++++|++ .+|+++. .+|+|.++++.. +..... +. .......++.++|++++++++.. ...|
T Consensus 91 ~i~~~~~g--~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 91 HIAVDPDG--RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEECTTS--SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred EEEEecCC--CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 79999999 6777776 589999999986 433322 21 11356789999999999998876 5689
Q ss_pred EEEECcCCc--e--eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc------CCcee
Q 016457 149 QFWDWRNKK--Q--VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV------GTSVG 218 (389)
Q Consensus 149 ~iwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~i~ 218 (389)
.+|++.... . ...+........+.++|+|+++..+++...++.|.+|++.........+...... .....
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 999987654 2 2233324556789999999997455666678889999998322112222222111 12567
Q ss_pred eEEEecCCCcEEEEEe-cCCcEEEEEcC--CCce--eEEeecccccccCCccCCCCCceeeecccCCCCeEEEE-EecCC
Q 016457 219 KVGFFGETNKHLWCLT-HIETLSIWDWK--DGQN--VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI-GGTGA 292 (389)
Q Consensus 219 ~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~g~~d 292 (389)
.++++ +++++|+++. ..++|.+|++. +++. +..+.. .......+.++|+|+ +|+ +.-.+
T Consensus 249 ~i~is-pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~------------~G~~Pr~~~~s~~g~--~l~Va~~~s 313 (345)
T PF10282_consen 249 EIAIS-PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT------------GGKFPRHFAFSPDGR--YLYVANQDS 313 (345)
T ss_dssp EEEE--TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE------------SSSSEEEEEE-TTSS--EEEEEETTT
T ss_pred eEEEe-cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC------------CCCCccEEEEeCCCC--EEEEEecCC
Confidence 88999 7777777665 46789999993 2332 222222 124578899999998 544 44467
Q ss_pred ceEEEEEec
Q 016457 293 GTVGYFPVN 301 (389)
Q Consensus 293 g~i~i~~~~ 301 (389)
+.|.+|+++
T Consensus 314 ~~v~vf~~d 322 (345)
T PF10282_consen 314 NTVSVFDID 322 (345)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 889999885
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.54 E-value=1.8e-12 Score=104.26 Aligned_cols=257 Identities=15% Similarity=0.141 Sum_probs=180.1
Q ss_pred eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc-CCeEEEEEEc-CCCCeEEEEEeCCCCeEEEeecCCeE
Q 016457 71 QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR-SFHEVWSVTA-GSQEIFCFSFGGSTDYLLAAGCGSQI 148 (389)
Q Consensus 71 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i 148 (389)
..+..+.||.+.|++...-|.. .-+++.+.|.+++||--+ .++.-..+.. -..+++++.+.+....|+++-..|++
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e--~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKE--EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchhhhhhheeccCC--CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 3456778999999998888877 689999999999999644 3443333332 26889999999777778887778999
Q ss_pred EEEECc----CCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEec
Q 016457 149 QFWDWR----NKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFG 224 (389)
Q Consensus 149 ~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 224 (389)
.-+.+. ....++... .|...+..+.|+-... ++++.+.|..+..--.+.+........ ......+.+.
T Consensus 93 tefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~~~d- 164 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASALQFD- 164 (404)
T ss_pred EEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEe-----eccCCCCcee-
Confidence 888654 233444444 7999999999998775 899999887765444443321111111 1111222221
Q ss_pred CCCcEEEEEecCCcEEEEEcC--CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 225 ETNKHLWCLTHIETLSIWDWK--DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 225 ~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
- .+...|...|.|.+-.+. ....+.++.+ |.+.+.+++|.+... .|.+|..|..+.+||+..
T Consensus 165 ~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~------------h~~~~~~l~Wd~~~~--~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 165 A--LYAFVGDHSGQITMLKLEQNGCQLITTFNG------------HTGEVTCLKWDPGQR--LLFSGASDHSVIMWDIGG 228 (404)
T ss_pred e--EEEEecccccceEEEEEeecCCceEEEEcC------------cccceEEEEEcCCCc--EEEeccccCceEEEeccC
Confidence 0 144555555655554433 3456666666 789999999999877 789999999999999987
Q ss_pred CCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcccchhh
Q 016457 303 GGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINRSW 368 (389)
Q Consensus 303 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~~~~~~ 368 (389)
.+. +.....+|...|..+ .+-+--+.|++++.||.|.+|+.+..-.+...|
T Consensus 229 ~~g------~~~el~gh~~kV~~l---------~~~~~t~~l~S~~edg~i~~w~mn~~r~etpew 279 (404)
T KOG1409|consen 229 RKG------TAYELQGHNDKVQAL---------SYAQHTRQLISCGEDGGIVVWNMNVKRVETPEW 279 (404)
T ss_pred Ccc------eeeeeccchhhhhhh---------hhhhhheeeeeccCCCeEEEEeccceeecCccc
Confidence 654 343345999999999 555666778999999999999999774444444
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=1.6e-13 Score=131.45 Aligned_cols=212 Identities=15% Similarity=0.189 Sum_probs=164.6
Q ss_pred EEEEecCceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCCCCEEEEE
Q 016457 23 IKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPSTPHVLHSC 100 (389)
Q Consensus 23 i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~ 100 (389)
..-|..+..-..+++ -..|.++.-+|...+-++|+.||.|++|....++.+..++. -...|+.+.|+..| +.+..+
T Consensus 2192 ~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG--nk~~i~ 2269 (2439)
T KOG1064|consen 2192 GSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG--NKFGIV 2269 (2439)
T ss_pred ccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC--Cceeee
Confidence 333444333333444 67788999999989999999999999999988887777652 33789999999999 789999
Q ss_pred ecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceeeeeeecccCCeeEEEEec
Q 016457 101 SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVP 177 (389)
Q Consensus 101 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 177 (389)
..||.+.+|.+. .++....+.|......+.|- +..+++++. ++.+.+||..-.....-+..+|...++++++-|
T Consensus 2270 d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2270 DGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFI--GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP 2346 (2439)
T ss_pred ccCCceeecccC-CcceeccccCCccccceeee--ehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC
Confidence 999999999987 77788888999999999996 356666655 689999997643322222238999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457 178 NNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN 255 (389)
Q Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 255 (389)
..+ +|++|+.+|.|++||++.. +.+..+.. + ....++++++..|.|+||++.....++++..
T Consensus 2347 ~~q-llisggr~G~v~l~D~rqr----ql~h~~~~---------~--~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2347 KHQ-LLISGGRKGEVCLFDIRQR----QLRHTFQA---------L--DTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred cce-EEEecCCcCcEEEeehHHH----HHHHHhhh---------h--hhhheeeccCcccceEEEEccccchhhcCch
Confidence 996 9999999999999999922 22222221 2 2456899999999999999998888888775
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=3.6e-10 Score=92.19 Aligned_cols=277 Identities=12% Similarity=0.194 Sum_probs=177.8
Q ss_pred CCeEEEEeCCCc--ee-eeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccC--CeEE--EEEEcCCCCeE
Q 016457 59 TNVVKLYSPVTG--QY-SGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRS--FHEV--WSVTAGSQEIF 128 (389)
Q Consensus 59 d~~i~iw~~~~~--~~-~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~~~~--~~~~~~~~~v~ 128 (389)
+.-|++|++.+. +. ...+-.+.+..+-|+|+|+. +.|.++..+ |.|..|.++. |+.. ........+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~--~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQ--RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCC--CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 456999998742 21 11223366778999999998 688887654 6777777764 4432 22222245558
Q ss_pred EEEEeCCCCeEEEeec-CCeEEEEECcC-Cce---eeeeeecccCC----------eeEEEEecCCCCeEEEEeC-CCcE
Q 016457 129 CFSFGGSTDYLLAAGC-GSQIQFWDWRN-KKQ---VACLEESHVED----------VTQVHFVPNNQNKVVSASV-DGLI 192 (389)
Q Consensus 129 ~~~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~---~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~~-d~~i 192 (389)
.+++++++..++++.. .|.|.++-++. |.+ +..+. |.+. +.+..+.|+++ ++++..- --.|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri 169 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRI 169 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceE
Confidence 9999999999998887 79999999875 332 23333 5444 88899999996 6666542 3469
Q ss_pred EEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec-CCcEEEEEcCCC-ceeEEeecccccccCCccCCCCC
Q 016457 193 CTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH-IETLSIWDWKDG-QNVASFENARSLASDSWTLDDVD 270 (389)
Q Consensus 193 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 270 (389)
.+|++..+.........+ ......+.|.|+ |++++.++.++ +++|-+|..... ..+..++....++.. +....
T Consensus 170 ~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d---F~g~~ 244 (346)
T COG2706 170 FLYDLDDGKLTPADPAEV-KPGAGPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED---FTGTN 244 (346)
T ss_pred EEEEcccCcccccccccc-CCCCCcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc---cCCCC
Confidence 999998554222222222 456678899999 78887766665 789999998874 333333322222111 12345
Q ss_pred ceeeecccCCCCeEEEEEec-CCceEEEEEeccCCccccCCCeEEEe--cccceeeeeccCCCcccCCCCCCCceeEEEe
Q 016457 271 YFVDCHYPGEGENLWVIGGT-GAGTVGYFPVNYGGAATIGPPEAVLV--GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG 347 (389)
Q Consensus 271 ~i~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~ 347 (389)
....+..+++|+ ||.++. ....|.+|.+....- .+..+. ..+...-++. .|+++|++|+++
T Consensus 245 ~~aaIhis~dGr--FLYasNRg~dsI~~f~V~~~~g-----~L~~~~~~~teg~~PR~F---------~i~~~g~~Liaa 308 (346)
T COG2706 245 WAAAIHISPDGR--FLYASNRGHDSIAVFSVDPDGG-----KLELVGITPTEGQFPRDF---------NINPSGRFLIAA 308 (346)
T ss_pred ceeEEEECCCCC--EEEEecCCCCeEEEEEEcCCCC-----EEEEEEEeccCCcCCccc---------eeCCCCCEEEEE
Confidence 677889999999 665543 234788888765421 011111 1122223334 889999999998
Q ss_pred cCCC-eEEEEeccCC
Q 016457 348 GEDG-RLCCWLSDDS 361 (389)
Q Consensus 348 ~~dg-~v~iW~~~~~ 361 (389)
..|+ .|.+|.++..
T Consensus 309 ~q~sd~i~vf~~d~~ 323 (346)
T COG2706 309 NQKSDNITVFERDKE 323 (346)
T ss_pred ccCCCcEEEEEEcCC
Confidence 7554 6999998865
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=1.8e-13 Score=131.13 Aligned_cols=228 Identities=12% Similarity=0.187 Sum_probs=171.7
Q ss_pred CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457 79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK 157 (389)
Q Consensus 79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 157 (389)
+-..|.++.=+|.. .+.+||+.||.|++|....++.+..++.. ...|+.+.|+.+|+.+-.+..||.+.+|.+. .+
T Consensus 2207 ~v~~v~r~~sHp~~--~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD--PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ccCceeeecCCCCC--ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 45668888888877 79999999999999999999888877643 5889999999999999999999999999976 66
Q ss_pred eeeeeeecccCCeeEEEEecCCCCeEEEEe---CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457 158 QVACLEESHVEDVTQVHFVPNNQNKVVSAS---VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT 234 (389)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 234 (389)
+....+ .|....+.+.|-. ..+++++ .++.+.+||..-.. ....+. ..|...++.+++. |..++|++|+
T Consensus 2284 ~~~s~q-chnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~-~~s~v~--~~H~~gaT~l~~~-P~~qllisgg 2355 (2439)
T KOG1064|consen 2284 PYTSWQ-CHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP-MNSLVH--TCHDGGATVLAYA-PKHQLLISGG 2355 (2439)
T ss_pred ceeccc-cCCccccceeeee---hhhhccccCCCCCcccchhcccCc-ccceee--eecCCCceEEEEc-CcceEEEecC
Confidence 666666 7999899998886 2677765 46889999987321 112222 6799999999999 7788999999
Q ss_pred cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEE
Q 016457 235 HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAV 314 (389)
Q Consensus 235 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~ 314 (389)
.+|.|++||++..+.++.++. +. ... ++++|+..|.|+||++..... +..
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~---------------------~~-~~~--~f~~~ss~g~ikIw~~s~~~l------l~~ 2405 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA---------------------LD-TRE--YFVTGSSEGNIKIWRLSEFGL------LHT 2405 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh---------------------hh-hhh--eeeccCcccceEEEEccccch------hhc
Confidence 999999999998888777652 22 223 889999999999999987655 455
Q ss_pred Eecccceeeeecc-CCCcccCCCCCCCceeEEEecCCCe
Q 016457 315 LVGGHTAVVRSVL-PMPSVQGRPAQSHGIFGWTGGEDGR 352 (389)
Q Consensus 315 ~~~~h~~~v~~~~-~~~~~~~~~~s~~~~~l~s~~~dg~ 352 (389)
++..|. =.+++ -.+.++ +-..+..|.+|+.||+
T Consensus 2406 ~p~e~a--k~gfFr~~g~Q~---~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2406 FPSEHA--KQGFFRNIGMQI---NVGQCNRIFSCGADGT 2439 (2439)
T ss_pred Cchhhc--ccchhhhcCcee---eeccCceEEEecCCCC
Confidence 543342 12222 122222 2233445677887874
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3e-11 Score=108.61 Aligned_cols=214 Identities=12% Similarity=0.030 Sum_probs=133.5
Q ss_pred eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457 61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD 137 (389)
Q Consensus 61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 137 (389)
.|.++|.+.++ ...+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++... +......+....|+|+++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG--~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDG--KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCC--CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC
Confidence 47888877444 44455577789999999999 677665533 368899998876543 332334556789999999
Q ss_pred eEEEeec-CC--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCC--cEEEEecCCCCCCCccceeee
Q 016457 138 YLLAAGC-GS--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDG--LICTFDTGGDINDDDLLESVI 211 (389)
Q Consensus 138 ~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~ 211 (389)
.++.+.. +| .|++||+.+++.. .+. .+........|+|+++ .|+..+ .++ .|+++|+.++. ...+.
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~~spDg~-~i~f~s~~~g~~~iy~~d~~~g~-----~~~lt 327 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLS-RVT-NHPAIDTEPFWGKDGR-TLYFTSDRGGKPQIYKVNVNGGR-----AERVT 327 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeE-Ecc-cCCCCcCCeEECCCCC-EEEEEECCCCCceEEEEECCCCC-----EEEee
Confidence 8876543 44 6888999877643 344 3455567789999996 555544 343 47777776542 22222
Q ss_pred ccCCceeeEEEecCCCcEEEEEecC-C--cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457 212 NVGTSVGKVGFFGETNKHLWCLTHI-E--TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG 288 (389)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 288 (389)
..........|+ ++++.++..+.+ + .|.++|+.+++.. .+... .......|+|+|+.+ +++
T Consensus 328 ~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-------------~~~~~p~~spdg~~i-~~~ 391 (430)
T PRK00178 328 FVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-------------SLDESPSVAPNGTML-IYA 391 (430)
T ss_pred cCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-------------CCCCCceECCCCCEE-EEE
Confidence 122233456788 667777666543 3 5888998877543 33221 112245799999843 233
Q ss_pred ecCCc--eEEEEEecc
Q 016457 289 GTGAG--TVGYFPVNY 302 (389)
Q Consensus 289 g~~dg--~i~i~~~~~ 302 (389)
...+| .|+++++..
T Consensus 392 ~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 392 TRQQGRGVLMLVSING 407 (430)
T ss_pred EecCCceEEEEEECCC
Confidence 33333 466666653
No 257
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.51 E-value=1e-13 Score=109.89 Aligned_cols=303 Identities=13% Similarity=0.107 Sum_probs=188.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc-----eeeeeecCCC------------CcEEEEEEeCCCCCCEEEEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-----QYSGECKGHS------------STVNQISFSGPSTPHVLHSC 100 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~------------~~v~~i~~~~~~~~~~l~s~ 100 (389)
.+.|+++.|...|.+|++|...|.|.+|.-+.. +....+++|. ..|..|.|..++....++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 678999999999999999999999999975432 2334455554 45889999876644567777
Q ss_pred ecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec---------CCeEEEEECcCCceeeeeeecccCCee
Q 016457 101 SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC---------GSQIQFWDWRNKKQVACLEESHVEDVT 171 (389)
Q Consensus 101 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~ 171 (389)
+.|.+|++|.+...... .+.. ...+.---+|-++-+.+... |..|.. .+.+.....|.--+.
T Consensus 106 tNdktiKlWKiyeknlk-~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa------~p~rvyaNaH~yhiN 176 (460)
T COG5170 106 TNDKTIKLWKIYEKNLK-VVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA------KPCRVYANAHPYHIN 176 (460)
T ss_pred cCCceeeeeeeecccch-hhhc--cccccccccccCCCcCCHHHhhcccccccceEEEe------ccceeccccceeEee
Confidence 78999999998754221 1111 01111011112221111110 111111 112222236888899
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc-----CCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457 172 QVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV-----GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD 246 (389)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 246 (389)
++.|+.+.+ .++++ .|=.|.+|++.-.... -.+..+..| ...|++..|+|.....+.-++..|.|++-|++.
T Consensus 177 SiS~NsD~e-t~lSa-DdLrINLWnl~i~D~s-FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 177 SISFNSDKE-TLLSA-DDLRINLWNLEIIDGS-FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eeeecCchh-eeeec-cceeeeeccccccCCc-eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 999999875 55555 5788999998732111 112222222 246788999987788888899999999999984
Q ss_pred Ccee----EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc--
Q 016457 247 GQNV----ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT-- 320 (389)
Q Consensus 247 ~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~-- 320 (389)
.... ..+...-......+-.+-...|.++.|+++|+ ||++-+. -+|+|||+...+. |+.+++ -|.
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr--yIlsRdy-ltvkiwDvnm~k~-----pikTi~-~h~~l 324 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR--YILSRDY-LTVKIWDVNMAKN-----PIKTIP-MHCDL 324 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc--EEEEecc-ceEEEEecccccC-----Cceeec-hHHHH
Confidence 3211 11110000000000001236788899999998 8777643 5799999987654 456664 554
Q ss_pred -eeeeeccC---CCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 321 -AVVRSVLP---MPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 321 -~~v~~~~~---~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
..+.+++. .-..+.+.||.|.+.+.+|+.....-++-.+.+
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccC
Confidence 34455542 223445689999999999999998888886655
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.1e-11 Score=108.51 Aligned_cols=218 Identities=13% Similarity=0.020 Sum_probs=137.2
Q ss_pred eEEEEecC-ceeeeeec-CcceEEEeecCCCCeEEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCE
Q 016457 22 SIKRFGLK-NSIQTNFG-DDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHV 96 (389)
Q Consensus 22 ~i~~w~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 96 (389)
.|.++|.. ...+.+.. ...+...+|+|||+.|+..+.+ ..|.+|++.+++... +....+.+....|+|++ +.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG--~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDG--SK 256 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCC--CE
Confidence 46777764 23344433 6778999999999999877643 369999998876433 22233445678999999 56
Q ss_pred EE-EEecCC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C--CeEEEEECcCCceeeeeeecccCCe
Q 016457 97 LH-SCSSDG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G--SQIQFWDWRNKKQVACLEESHVEDV 170 (389)
Q Consensus 97 l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v 170 (389)
|+ +...+| .|.+||+.+++.. .+..+........|+|+++.++..+. + ..|+++|+.+++... +. ......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt-~~~~~~ 333 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VT-FVGNYN 333 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee-cCCCCc
Confidence 55 555555 5888899877654 34444555677899999998877765 3 367888887776432 22 122334
Q ss_pred eEEEEecCCCCeEEEEeC-CC--cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-C--cEEEEEc
Q 016457 171 TQVHFVPNNQNKVVSASV-DG--LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-E--TLSIWDW 244 (389)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-~--~i~i~d~ 244 (389)
....|+|+++ .++..+. ++ .|.++|+.++. ...+. .........|+ ++++.++..+.+ + .|.++++
T Consensus 334 ~~~~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~-----~~~lt-~~~~~~~p~~s-pdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 334 ARPRLSADGK-TLVMVHRQDGNFHVAAQDLQRGS-----VRILT-DTSLDESPSVA-PNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred cceEECCCCC-EEEEEEccCCceEEEEEECCCCC-----EEEcc-CCCCCCCceEC-CCCCEEEEEEecCCceEEEEEEC
Confidence 4678999996 6665554 33 47888988652 11111 11122355788 666766655543 3 4667776
Q ss_pred CCCceeEEee
Q 016457 245 KDGQNVASFE 254 (389)
Q Consensus 245 ~~~~~~~~~~ 254 (389)
. +.....+.
T Consensus 406 ~-g~~~~~l~ 414 (430)
T PRK00178 406 N-GRVRLPLP 414 (430)
T ss_pred C-CCceEECc
Confidence 4 33333443
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.5e-11 Score=108.74 Aligned_cols=232 Identities=13% Similarity=0.007 Sum_probs=141.0
Q ss_pred CeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCC
Q 016457 21 NSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPH 95 (389)
Q Consensus 21 ~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 95 (389)
..|.++|... ..+.+.. ...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +..........+|+|++ +
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG--~ 274 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDG--K 274 (448)
T ss_pred eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCC--C
Confidence 3566667643 2333333 6788899999999998877543 268899998776432 22222334578999999 5
Q ss_pred EEE-EEecCCe--EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C--CeEEEEECcCCceeeeeeecccCC
Q 016457 96 VLH-SCSSDGT--IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G--SQIQFWDWRNKKQVACLEESHVED 169 (389)
Q Consensus 96 ~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~ 169 (389)
.|+ +.+.+|. |.++|+.+++.. .+..+.......+|+|+++.++..+. + ..|.++|+.+++... +. .....
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt-~~g~~ 351 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT-FEGEQ 351 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee-cCCCC
Confidence 554 5566665 777788776653 34444456678899999998877665 3 357777887766433 32 12223
Q ss_pred eeEEEEecCCCCeEEEEeC-CC--cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe-cCC--cEEEEE
Q 016457 170 VTQVHFVPNNQNKVVSASV-DG--LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT-HIE--TLSIWD 243 (389)
Q Consensus 170 v~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~--~i~i~d 243 (389)
....+|+|+|+ .|+..+. ++ .|.++|+.++. ...+... .......|+ ++++.|+..+ .++ .+.+++
T Consensus 352 ~~~~~~SpDG~-~l~~~~~~~g~~~I~~~dl~~g~-----~~~lt~~-~~d~~ps~s-pdG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 352 NLGGSITPDGR-SMIMVNRTNGKFNIARQDLETGA-----MQVLTST-RLDESPSVA-PNGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred CcCeeECCCCC-EEEEEEecCCceEEEEEECCCCC-----eEEccCC-CCCCCceEC-CCCCEEEEEEecCCceEEEEEE
Confidence 44578999997 6555443 44 35567776542 1111111 122244788 5666655544 344 367777
Q ss_pred cCCCceeEEeecccccccCCccCCCCCceeeecccC
Q 016457 244 WKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG 279 (389)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (389)
. ++.....+.. +...+...+|+|
T Consensus 424 ~-~G~~~~~l~~------------~~g~~~~p~Wsp 446 (448)
T PRK04792 424 I-DGRFKARLPA------------GQGEVKSPAWSP 446 (448)
T ss_pred C-CCCceEECcC------------CCCCcCCCccCC
Confidence 6 4555555543 224456667776
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.50 E-value=4.9e-10 Score=94.95 Aligned_cols=263 Identities=13% Similarity=0.065 Sum_probs=162.5
Q ss_pred CeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEec----------CCeEEEEeCCCceeeeeecCCC-------C
Q 016457 21 NSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLS----------TNVVKLYSPVTGQYSGECKGHS-------S 81 (389)
Q Consensus 21 ~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~-------~ 81 (389)
++|.+.|.. +.+.++.....-..+ ++||++.|+++.. +..|.+||..+++.+..+.-.. .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 789999875 344555542223334 9999998888866 6899999999999988876322 2
Q ss_pred cEEEEEEeCCCCCCEEEEEe-c-CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC-Cce
Q 016457 82 TVNQISFSGPSTPHVLHSCS-S-DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN-KKQ 158 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~ 158 (389)
.-..++++|++ ++|+... . +..|.+.|+.+++.+..+.... ...-...+ ....+ +-+.||......+.+ ++.
T Consensus 106 ~~~~~~ls~dg--k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~-~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 106 YPWMTSLTPDN--KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF-MHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred ccceEEECCCC--CEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec-CCccE-EEeecCceEEEEecCCCce
Confidence 23478999999 6777655 3 6899999999999999888642 22222222 22222 333445444433322 221
Q ss_pred e-eeeeeccc--CCe-eEEEEec-CCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec--------cCCceeeEEEecC
Q 016457 159 V-ACLEESHV--EDV-TQVHFVP-NNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN--------VGTSVGKVGFFGE 225 (389)
Q Consensus 159 ~-~~~~~~~~--~~v-~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~ 225 (389)
. ....-.+. .++ ..-.|.+ ++. ++.+... |.|.+.|+............... ....+..++++ +
T Consensus 181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~-~ 257 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH-R 257 (352)
T ss_pred EEeeeeeecCCccccccCCceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc-C
Confidence 1 11100011 000 0004455 664 6665554 99999997643211111111110 12233448998 5
Q ss_pred CCcEEEEEe----------cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceE
Q 016457 226 TNKHLWCLT----------HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV 295 (389)
Q Consensus 226 ~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i 295 (389)
+++.+++.. ..+.|.++|..+++.+..+... ..+..++++||++..++++...++.|
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-------------~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-------------HEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-------------CceeeEEECCCCCeEEEEeCCCCCcE
Confidence 556666532 2258999999999999888742 57889999999983334455568889
Q ss_pred EEEEeccCCc
Q 016457 296 GYFPVNYGGA 305 (389)
Q Consensus 296 ~i~~~~~~~~ 305 (389)
.++|..+++.
T Consensus 325 sViD~~t~k~ 334 (352)
T TIGR02658 325 YIFDAETGKE 334 (352)
T ss_pred EEEECcCCeE
Confidence 9999998876
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.5e-11 Score=108.73 Aligned_cols=214 Identities=11% Similarity=-0.003 Sum_probs=129.2
Q ss_pred eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec-CC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457 61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS-DG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD 137 (389)
Q Consensus 61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 137 (389)
.|.++|....+. ..+..+...+....|+|++ +.|+..+. ++ .|.+||+.+++... +..........+|+|+++
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG--~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDG--RKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCC--CEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCC
Confidence 677778654433 3444567788999999999 56766543 33 58888988776533 222233445789999999
Q ss_pred eEEEeec-CC--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCC--cEEEEecCCCCCCCccceeee
Q 016457 138 YLLAAGC-GS--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDG--LICTFDTGGDINDDDLLESVI 211 (389)
Q Consensus 138 ~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~ 211 (389)
.++.+.. ++ .|+++|+.+++.. .+. .+........|+|+++ .|+..+ .++ .|+++|+.++. ...+.
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~-~I~f~s~~~g~~~Iy~~dl~~g~-----~~~Lt 346 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGK-SLIFTSERGGKPQIYRVNLASGK-----VSRLT 346 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCC-----EEEEe
Confidence 8876543 55 4888898877543 344 3455667889999997 555444 344 46666776442 22222
Q ss_pred ccCCceeeEEEecCCCcEEEEEec-CC--cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457 212 NVGTSVGKVGFFGETNKHLWCLTH-IE--TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG 288 (389)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 288 (389)
.........+|+ +++++|+..+. ++ .|.++|+.+++.. .+... .......|+|+|+.++ ++
T Consensus 347 ~~g~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-------------~~d~~ps~spdG~~I~-~~ 410 (448)
T PRK04792 347 FEGEQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-------------RLDESPSVAPNGTMVI-YS 410 (448)
T ss_pred cCCCCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-------------CCCCCceECCCCCEEE-EE
Confidence 222233456888 66766666554 34 4566787776543 22211 1112347999998543 33
Q ss_pred ecCCc--eEEEEEecc
Q 016457 289 GTGAG--TVGYFPVNY 302 (389)
Q Consensus 289 g~~dg--~i~i~~~~~ 302 (389)
...+| .+++++...
T Consensus 411 ~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 411 TTYQGKQVLAAVSIDG 426 (448)
T ss_pred EecCCceEEEEEECCC
Confidence 33444 366677643
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=3.5e-11 Score=103.05 Aligned_cols=256 Identities=13% Similarity=0.097 Sum_probs=170.6
Q ss_pred CCeEEEEecCceee--eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCE
Q 016457 20 VNSIKRFGLKNSIQ--TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHV 96 (389)
Q Consensus 20 ~~~i~~w~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 96 (389)
...+++|++.+... .+.. ...-++..|++|..+.|- -..+.+.+|+....+.... .-|...|+.+.++|...+..
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPF 181 (566)
T ss_pred CCceeeeeeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceee-eeeccceeeEEecCCCCCce
Confidence 45688999876222 2222 222268899998754433 3367899999876432222 22678899999999865456
Q ss_pred EEE-----EecCCeEEEEEccCCeEEEEEE---cCCCCeEEEEEeCCCCeEEEee-c--C---------CeEEEEECcCC
Q 016457 97 LHS-----CSSDGTIRAWDTRSFHEVWSVT---AGSQEIFCFSFGGSTDYLLAAG-C--G---------SQIQFWDWRNK 156 (389)
Q Consensus 97 l~s-----~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~--d---------~~i~iwd~~~~ 156 (389)
+|+ .|.-+.|+||...-...-..+. .....=..+.|++-+.-|++-. . | .++++.++...
T Consensus 182 vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~ 261 (566)
T KOG2315|consen 182 VAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE 261 (566)
T ss_pred EEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence 665 4556689999876222111111 1123344577887666544422 2 3 47888888744
Q ss_pred ceeeeeeecccCCeeEEEEecCCCCeEEE--EeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457 157 KQVACLEESHVEDVTQVHFVPNNQNKVVS--ASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT 234 (389)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 234 (389)
.....+. ..++|.++.|+|++. .+++ |-.=..+.|||++.. ..+.-.+++-+.+-|+ +.|++++.++
T Consensus 262 s~~V~L~--k~GPVhdv~W~~s~~-EF~VvyGfMPAkvtifnlr~~-------~v~df~egpRN~~~fn-p~g~ii~lAG 330 (566)
T KOG2315|consen 262 SVSVPLL--KEGPVHDVTWSPSGR-EFAVVYGFMPAKVTIFNLRGK-------PVFDFPEGPRNTAFFN-PHGNIILLAG 330 (566)
T ss_pred eEEEecC--CCCCceEEEECCCCC-EEEEEEecccceEEEEcCCCC-------EeEeCCCCCccceEEC-CCCCEEEEee
Confidence 5555554 689999999999996 5444 344567999999932 1222245667788888 7888888887
Q ss_pred cC---CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC------CceEEEEEeccCC
Q 016457 235 HI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG------AGTVGYFPVNYGG 304 (389)
Q Consensus 235 ~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~------dg~i~i~~~~~~~ 304 (389)
.+ |.|-+||+.+.+++..+.. ...+-+.|+|||+ |+++++. |..++||++....
T Consensus 331 FGNL~G~mEvwDv~n~K~i~~~~a--------------~~tt~~eW~PdGe--~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 331 FGNLPGDMEVWDVPNRKLIAKFKA--------------ANTTVFEWSPDGE--YFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred cCCCCCceEEEeccchhhcccccc--------------CCceEEEEcCCCc--EEEEEeccccEEecCCeEEEEecCce
Confidence 75 6999999999888888875 4567789999999 6666543 5779999987543
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=3.8e-12 Score=112.02 Aligned_cols=283 Identities=10% Similarity=0.060 Sum_probs=190.2
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce---------------eeeeecCCCCcEEEEEEeCCCCCCEEEEEec
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ---------------YSGECKGHSSTVNQISFSGPSTPHVLHSCSS 102 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~---------------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~ 102 (389)
+....|++|+....++|+|+.||.+++..+.+.. .-+++.||...|.-+.|+.+. +.|-|...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~--QKLTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN--QKLTTSDT 91 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc--ccccccCC
Confidence 4567899999999999999999999999775421 123568999999999999777 78999999
Q ss_pred CCeEEEEEccCCeEEEEE--EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceee-eeeecccCCeeEEEEecCC
Q 016457 103 DGTIRAWDTRSFHEVWSV--TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA-CLEESHVEDVTQVHFVPNN 179 (389)
Q Consensus 103 dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~ 179 (389)
+|.|.+|-+-.+.-...+ ...++-|.+++|+.+|..+.....||.|.+=.+..++.-. .++ ......+.|+++.
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk---g~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK---GQLLAHVLWSEDL 168 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc---hheccceeecccH
Confidence 999999998776543222 2236789999999999999999999999887765433221 222 2234578999998
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCCC---cccee----eeccCCceeeEEEe-------cCCCcEEEEEecCCcEEEEEcC
Q 016457 180 QNKVVSASVDGLICTFDTGGDINDD---DLLES----VINVGTSVGKVGFF-------GETNKHLWCLTHIETLSIWDWK 245 (389)
Q Consensus 180 ~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~----~~~~~~~i~~~~~~-------~~~~~~l~~~~~d~~i~i~d~~ 245 (389)
+ .++.+-.+|.+.+||........ .+... +...+..|..+.|. ||+...|+++-.+|.+.|-.-.
T Consensus 169 ~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e 247 (1189)
T KOG2041|consen 169 E-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE 247 (1189)
T ss_pred H-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence 6 78888889999999988542111 11011 11112235555553 4677789999999988887655
Q ss_pred CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCc---------eEEEEEeccCCccccCCCeEEEe
Q 016457 246 DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAG---------TVGYFPVNYGGAATIGPPEAVLV 316 (389)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg---------~i~i~~~~~~~~~~~~~~~~~~~ 316 (389)
+......+.. .-.+....|+++|. +|+.++.+. .|.+|..-. ..+..+.
T Consensus 248 ND~~Pvv~dt-------------gm~~vgakWnh~G~--vLAvcG~~~da~~~~d~n~v~Fysp~G-------~i~gtlk 305 (1189)
T KOG2041|consen 248 NDPEPVVVDT-------------GMKIVGAKWNHNGA--VLAVCGNDSDADEPTDSNKVHFYSPYG-------HIVGTLK 305 (1189)
T ss_pred CCCCCeEEec-------------ccEeecceecCCCc--EEEEccCcccccCccccceEEEeccch-------hheEEEe
Confidence 4433333332 25688899999998 777776542 455554332 2245554
Q ss_pred cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457 317 GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 317 ~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~ 359 (389)
.....|+++ +|-..|-.++-+- |+.|.+=++.
T Consensus 306 -vpg~~It~l---------sWEg~gLriA~Av-dsfiyfanIR 337 (1189)
T KOG2041|consen 306 -VPGSCITGL---------SWEGTGLRIAIAV-DSFIYFANIR 337 (1189)
T ss_pred -cCCceeeee---------EEcCCceEEEEEe-cceEEEEeec
Confidence 556677777 4444444444332 4444444443
No 264
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.50 E-value=2e-10 Score=101.58 Aligned_cols=259 Identities=14% Similarity=0.107 Sum_probs=160.8
Q ss_pred CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe-
Q 016457 49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI- 127 (389)
Q Consensus 49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v- 127 (389)
++..+++++.++.+..+|..+|+.+...... ..+.+.-...+ ..++.++.++.|..||.++++.+..++.....+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~~---~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVAN---GLVVVRTNDGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEEC---CEEEEECCCCeEEEEEcCCCceeeEEccCCCcee
Confidence 4567888888999999999999988776532 22222111113 367778889999999999999988876543221
Q ss_pred ----EEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC---C------e-eEEEEecCCCCeEEEEeCCCcEE
Q 016457 128 ----FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE---D------V-TQVHFVPNNQNKVVSASVDGLIC 193 (389)
Q Consensus 128 ----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~------v-~~~~~~~~~~~~l~~~~~d~~i~ 193 (389)
.+.... ++.++++..++.+..+|+++++.+.+....... . + .+..+. + ..+++++.+|.++
T Consensus 180 ~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~-~~vy~~~~~g~l~ 254 (377)
T TIGR03300 180 LRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G-GQVYAVSYQGRVA 254 (377)
T ss_pred ecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--C-CEEEEEEcCCEEE
Confidence 111222 356777777899999999999877654311110 0 0 111122 3 2777788899999
Q ss_pred EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457 194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV 273 (389)
Q Consensus 194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (389)
.||..++.. +-... .. ........ +..+++++.+|.+..+|..+++.+-...... . ....
T Consensus 255 a~d~~tG~~----~W~~~-~~-~~~~p~~~---~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~----------~-~~~s 314 (377)
T TIGR03300 255 ALDLRSGRV----LWKRD-AS-SYQGPAVD---DNRLYVTDADGVVVALDRRSGSELWKNDELK----------Y-RQLT 314 (377)
T ss_pred EEECCCCcE----EEeec-cC-CccCceEe---CCEEEEECCCCeEEEEECCCCcEEEcccccc----------C-Cccc
Confidence 999986631 11111 11 12222332 3477888899999999999998775543211 0 1111
Q ss_pred eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeE
Q 016457 274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRL 353 (389)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v 353 (389)
.... .++ .|++++.+|.|+++|..+++. +..+. .+...+..- -.-.+++ |+.++.||.|
T Consensus 315 sp~i--~g~--~l~~~~~~G~l~~~d~~tG~~------~~~~~-~~~~~~~~s---------p~~~~~~-l~v~~~dG~l 373 (377)
T TIGR03300 315 APAV--VGG--YLVVGDFEGYLHWLSREDGSF------VARLK-TDGSGIASP---------PVVVGDG-LLVQTRDGDL 373 (377)
T ss_pred cCEE--ECC--EEEEEeCCCEEEEEECCCCCE------EEEEE-cCCCccccC---------CEEECCE-EEEEeCCceE
Confidence 1111 245 677888999999999998876 55554 333222222 1122333 6788889999
Q ss_pred EEEe
Q 016457 354 CCWL 357 (389)
Q Consensus 354 ~iW~ 357 (389)
..+.
T Consensus 374 ~~~~ 377 (377)
T TIGR03300 374 YAFR 377 (377)
T ss_pred EEeC
Confidence 8763
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=2.8e-11 Score=104.30 Aligned_cols=191 Identities=11% Similarity=0.147 Sum_probs=151.3
Q ss_pred cCCCCeEEEEecCCeEEEEeCCCceeeeeecC---CCCcEEEEEEe------C------------CCCCCEEEEEecCCe
Q 016457 47 KNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG---HSSTVNQISFS------G------------PSTPHVLHSCSSDGT 105 (389)
Q Consensus 47 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~v~~i~~~------~------------~~~~~~l~s~~~dg~ 105 (389)
.|...++|....||.+++|+..+++....|.. -++..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567999999999999999999887776643 23344444443 1 011146888889999
Q ss_pred EEEEEccCCeEEEEEE--cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeE
Q 016457 106 IRAWDTRSFHEVWSVT--AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV 183 (389)
Q Consensus 106 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 183 (389)
|.+|++..++....+. .|.+.|+++.++.+-..+.+++.|+.+..|+......+.... +.+..+.+++.+|++. .+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is~D~~-~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCISPDGK-IL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEcCCCC-EE
Confidence 9999999999988887 468899999999888899999999999999999988888887 7788899999999996 88
Q ss_pred EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC-----CcEEEEE-ecCCcEEEEEcCC
Q 016457 184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET-----NKHLWCL-THIETLSIWDWKD 246 (389)
Q Consensus 184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~-~~d~~i~i~d~~~ 246 (389)
++++ +.|++||+.++ +.+..+.+|.++|.+++|. .. |.+++++ ..+.-+.+|-...
T Consensus 160 ~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~-~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFT-TLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEE-EeccccccceeeeccccccceeEEEEEc
Confidence 8886 78999999954 7788999999999999997 33 4555543 4455677776543
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.49 E-value=1.5e-10 Score=98.18 Aligned_cols=293 Identities=9% Similarity=-0.000 Sum_probs=192.4
Q ss_pred CeEEEEecCceeeeeec-CcceEEEeecCCCCeEEEEecCC---------------eEEEEeCCCceeeeeecCCCCc--
Q 016457 21 NSIKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTN---------------VVKLYSPVTGQYSGECKGHSST-- 82 (389)
Q Consensus 21 ~~i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~---------------~i~iw~~~~~~~~~~~~~~~~~-- 82 (389)
.-|.+|.....-+...- ...|..+.|+|.+++|.+=...+ .+.+||..+|.++..+.+...+
T Consensus 53 ~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~ 132 (561)
T COG5354 53 AGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYL 132 (561)
T ss_pred cceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCccc
Confidence 45777765432222222 56789999999999999876543 4999999999999998876655
Q ss_pred EE-EEEEeCCCCCCEEEEEecCCeEEEEEccCCeE----EEEEEcCCCCeEEEEEeCCCCe--EEE-----eecCCeEEE
Q 016457 83 VN-QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE----VWSVTAGSQEIFCFSFGGSTDY--LLA-----AGCGSQIQF 150 (389)
Q Consensus 83 v~-~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~--l~~-----~~~d~~i~i 150 (389)
.+ -+.|+.+. .++|-. ....+.|+++ ++.. ...++ ...|....|+|.++. |+. .+..+.+++
T Consensus 133 ~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i 206 (561)
T COG5354 133 GWPVLKFSIDD--KYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRI 206 (561)
T ss_pred ccceeeeeecc--hhhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEE
Confidence 44 67888777 465544 3446999997 3322 12222 367888889986432 222 234789999
Q ss_pred EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE-e----------CCCcEEEEecCCCCCCCccceeeeccCCceee
Q 016457 151 WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA-S----------VDGLICTFDTGGDINDDDLLESVINVGTSVGK 219 (389)
Q Consensus 151 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 219 (389)
|.+..+..+.+.. -....-..+.|++.|. .++.- - ....+++++++.. .+.......++|..
T Consensus 207 ~sIp~~s~l~tk~-lfk~~~~qLkW~~~g~-~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-----~i~V~~~~~~pVhd 279 (561)
T COG5354 207 LSIPKNSVLVTKN-LFKVSGVQLKWQVLGK-YLLVLVMTHTKSNKSYFGESNLYLLRITER-----SIPVEKDLKDPVHD 279 (561)
T ss_pred EEccCCCeeeeee-eEeecccEEEEecCCc-eEEEEEEEeeecccceeccceEEEEeeccc-----ccceecccccccee
Confidence 9998777665544 2334445788898886 44332 1 1345788888721 12222256789999
Q ss_pred EEEecCCCcEEE-EEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC---ceE
Q 016457 220 VGFFGETNKHLW-CLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA---GTV 295 (389)
Q Consensus 220 ~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d---g~i 295 (389)
.+|.|....+.+ +|-.+-.+.++|++.. ....+.. ..=..+.|+|.++ |++.++.| |.|
T Consensus 280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe--------------~~rNT~~fsp~~r--~il~agF~nl~gni 342 (561)
T COG5354 280 FTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE--------------QKRNTIFFSPHER--YILFAGFDNLQGNI 342 (561)
T ss_pred eeecccCCceeEEecccccceeecccccc-eEEecCC--------------cccccccccCccc--EEEEecCCccccce
Confidence 999955444433 3357789999999855 4444443 4446678999988 77765554 789
Q ss_pred EEEEeccCCccccCCCeE-EEecccceeeeeccCCCcccCCCCCCCceeEEEec------CCCeEEEEeccCC
Q 016457 296 GYFPVNYGGAATIGPPEA-VLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG------EDGRLCCWLSDDS 361 (389)
Q Consensus 296 ~i~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~------~dg~v~iW~~~~~ 361 (389)
-+||...... +. .+. +- -.+.| .|+||++++.+.. .|..|.||++...
T Consensus 343 ~i~~~~~rf~------~~~~~~-~~---n~s~~--------~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 343 EIFDPAGRFK------VAGAFN-GL---NTSYC--------DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEeccCCceE------EEEEee-cC---CceEe--------eccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 9999876433 11 121 11 12222 8999999988874 6888999999865
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.45 E-value=2.3e-10 Score=101.11 Aligned_cols=265 Identities=10% Similarity=0.049 Sum_probs=165.9
Q ss_pred CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEE
Q 016457 50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFC 129 (389)
Q Consensus 50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 129 (389)
+..+++++.++.|.-+|..+|+.+..+.-.......... ++ ..++.++.++.+..+|..+|+.+...... ..+.+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~ 139 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DG--GLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLS 139 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cC--CEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeec
Confidence 568888888999999999999988776543322222332 33 47888889999999999999998877654 23322
Q ss_pred -EEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCe-----eEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC
Q 016457 130 -FSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV-----TQVHFVPNNQNKVVSASVDGLICTFDTGGDIND 203 (389)
Q Consensus 130 -~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 203 (389)
... .++.+++++.++.|..||.++++.+.++. .....+ .+.... +. .++.+..++.+..+|.+++...
T Consensus 140 ~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 140 PPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred CCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEe
Confidence 222 35678888889999999999999887765 222111 111222 22 6778888899999999876421
Q ss_pred CccceeeeccCCc------e-eeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457 204 DDLLESVINVGTS------V-GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH 276 (389)
Q Consensus 204 ~~~~~~~~~~~~~------i-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (389)
............. + ....+. +..+++++.++.++.||..+++.+-..... . .....
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-------------~-~~~p~ 276 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVD---GGQVYAVSYQGRVAALDLRSGRVLWKRDAS-------------S-YQGPA 276 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEE---CCEEEEEEcCCEEEEEECCCCcEEEeeccC-------------C-ccCce
Confidence 1100000000000 1 111122 347888888999999999999877655421 1 11111
Q ss_pred ccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457 277 YPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356 (389)
Q Consensus 277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW 356 (389)
..++ .++.++.+|.|+.+|..+++. +.............. ...+..|++++.||.|+++
T Consensus 277 --~~~~--~vyv~~~~G~l~~~d~~tG~~------~W~~~~~~~~~~ssp-----------~i~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 277 --VDDN--RLYVTDADGVVVALDRRSGSE------LWKNDELKYRQLTAP-----------AVVGGYLVVGDFEGYLHWL 335 (377)
T ss_pred --EeCC--EEEEECCCCeEEEEECCCCcE------EEccccccCCccccC-----------EEECCEEEEEeCCCEEEEE
Confidence 2345 556777899999999988765 222210000001111 1134567888999999999
Q ss_pred eccCCcc
Q 016457 357 LSDDSSE 363 (389)
Q Consensus 357 ~~~~~~~ 363 (389)
+..++..
T Consensus 336 d~~tG~~ 342 (377)
T TIGR03300 336 SREDGSF 342 (377)
T ss_pred ECCCCCE
Confidence 9877643
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2.3e-10 Score=101.78 Aligned_cols=223 Identities=11% Similarity=0.001 Sum_probs=134.0
Q ss_pred CCeEEEEecC-ceeeeeec-CcceEEEeecCCCCeEE---EEecC--CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457 20 VNSIKRFGLK-NSIQTNFG-DDYVFEIVPKNDWSLMA---VSLST--NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS 92 (389)
Q Consensus 20 ~~~i~~w~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~---~~~~d--~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~ 92 (389)
...|.+.|.. ...+.+.. ...+..-+|+|||+.++ +...+ ..|.+.++.+++.... ....+.....+|+|||
T Consensus 164 ~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 164 QGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred cceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 3466676664 22333333 55667789999997532 33333 3688888887754332 2234445678999999
Q ss_pred CCCEEEEEe-cCC----eEEEEEccCC---eEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEE--ECcC-Cceee
Q 016457 93 TPHVLHSCS-SDG----TIRAWDTRSF---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFW--DWRN-KKQVA 160 (389)
Q Consensus 93 ~~~~l~s~~-~dg----~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iw--d~~~-~~~~~ 160 (389)
+.|+..+ .+| .+.+|++..+ ................+|+|++..|+..+. +|...+| ++.. +....
T Consensus 243 --~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 243 --KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred --CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 5666543 223 3455776642 333333332234567899999998887764 5654444 4432 23344
Q ss_pred eeeecccCCeeEEEEecCCCCeEEEEeCC---CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec--
Q 016457 161 CLEESHVEDVTQVHFVPNNQNKVVSASVD---GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH-- 235 (389)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-- 235 (389)
.+. .+...+....|+|+|+ .|+..+.+ ..|.+||+.++. ...+......+....|+ ++++.|+..+.
T Consensus 321 ~lt-~~~~~~~~p~wSPDG~-~Laf~~~~~g~~~I~v~dl~~g~-----~~~Lt~~~~~~~~p~wS-pDG~~L~f~~~~~ 392 (428)
T PRK01029 321 LLT-KKYRNSSCPAWSPDGK-KIAFCSVIKGVRQICVYDLATGR-----DYQLTTSPENKESPSWA-IDSLHLVYSAGNS 392 (428)
T ss_pred Eec-cCCCCccceeECCCCC-EEEEEEcCCCCcEEEEEECCCCC-----eEEccCCCCCccceEEC-CCCCEEEEEECCC
Confidence 444 3445677899999996 66655433 368999998653 22232233456778898 66776664433
Q ss_pred -CCcEEEEEcCCCceeEEe
Q 016457 236 -IETLSIWDWKDGQNVASF 253 (389)
Q Consensus 236 -d~~i~i~d~~~~~~~~~~ 253 (389)
...|.++|+..++.....
T Consensus 393 g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 393 NESELYLISLITKKTRKIV 411 (428)
T ss_pred CCceEEEEECCCCCEEEee
Confidence 347888898877654433
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.4e-10 Score=99.35 Aligned_cols=282 Identities=12% Similarity=0.116 Sum_probs=178.5
Q ss_pred CcceEEEeecCCCCeEEEEecC-----------CeEEEEeCCCceeeeeecCC--CCcE-EEEEEeCCCCCCEEEEEecC
Q 016457 38 DDYVFEIVPKNDWSLMAVSLST-----------NVVKLYSPVTGQYSGECKGH--SSTV-NQISFSGPSTPHVLHSCSSD 103 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iw~~~~~~~~~~~~~~--~~~v-~~i~~~~~~~~~~l~s~~~d 103 (389)
...|.-+.|||..++|++-+.. ..++|||+.+|.....+... ...+ .-..|+.++ +++|--..+
T Consensus 249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd--Ky~Arm~~~ 326 (698)
T KOG2314|consen 249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD--KYFARMTGN 326 (698)
T ss_pred CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC--ceeEEeccc
Confidence 4568889999999999987641 47999999999988887652 2222 345899998 688877665
Q ss_pred CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-----CCeEEEEECcCCceeeeeeecccCCeeEEEEecC
Q 016457 104 GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN 178 (389)
Q Consensus 104 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 178 (389)
+|.||+..+..++-.-...-..|....|+|.+..|+-=.- -..+.+-.+.+++.+++.. -+.-.=..|.|..+
T Consensus 327 -sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n-lfnVsDckLhWQk~ 404 (698)
T KOG2314|consen 327 -SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN-LFNVSDCKLHWQKS 404 (698)
T ss_pred -eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc-ceeeeccEEEeccC
Confidence 6999998765444322223577889999988665554322 1356666666666665554 34333344666677
Q ss_pred CCCeEEEEe----------CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE-ecC--CcEEEEEcC
Q 016457 179 NQNKVVSAS----------VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL-THI--ETLSIWDWK 245 (389)
Q Consensus 179 ~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d--~~i~i~d~~ 245 (389)
|. +|+.-- .=..+-|+.++. .............|...+|-| .|+.+++. +.+ .++.+|.++
T Consensus 405 gd-yLcvkvdR~tK~~~~g~f~n~eIfrire----KdIpve~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 405 GD-YLCVKVDRHTKSKVKGQFSNLEIFRIRE----KDIPVEVVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred Cc-EEEEEEEeeccccccceEeeEEEEEeec----cCCCceeeecchheeeeeecc-CCCeEEEEEccccccceeEEEee
Confidence 75 554321 112355666662 222333334567889999995 45444443 333 478888877
Q ss_pred C-C---ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe---cCCceEEEEEeccCCccccCCCeEEEecc
Q 016457 246 D-G---QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG---TGAGTVGYFPVNYGGAATIGPPEAVLVGG 318 (389)
Q Consensus 246 ~-~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g---~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 318 (389)
+ . +.+..+.. ...+.+.|+|.|+ +++.+ |..|.+.++|..-...... . . ..
T Consensus 479 ~~~~~~~lVk~~dk--------------~~~N~vfwsPkG~--fvvva~l~s~~g~l~F~D~~~a~~k~~----~-~-~e 536 (698)
T KOG2314|consen 479 TNIKKPSLVKELDK--------------KFANTVFWSPKGR--FVVVAALVSRRGDLEFYDTDYADLKDT----A-S-PE 536 (698)
T ss_pred cCCCchhhhhhhcc--------------cccceEEEcCCCc--EEEEEEecccccceEEEecchhhhhhc----c-C-cc
Confidence 3 2 22333332 5577899999999 65543 4578999999884322000 0 0 01
Q ss_pred cceeeeeccCCCcccCCCCCCCceeEEEec------CCCeEEEEeccCC
Q 016457 319 HTAVVRSVLPMPSVQGRPAQSHGIFGWTGG------EDGRLCCWLSDDS 361 (389)
Q Consensus 319 h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~------~dg~v~iW~~~~~ 361 (389)
| ...+.+ .|+|.|+|++|++ .|.--++|++...
T Consensus 537 h-~~at~v---------eWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 537 H-FAATEV---------EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred c-cccccc---------eECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 2 122444 8999999999987 4556678888765
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.8e-10 Score=98.67 Aligned_cols=281 Identities=12% Similarity=0.113 Sum_probs=177.4
Q ss_pred eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec-----------CCeEEEE
Q 016457 41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS-----------DGTIRAW 109 (389)
Q Consensus 41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-----------dg~i~iw 109 (389)
=+-+.|||.|.+|++--..| |.+|--++-..++.+. |. .|.-+.|+|.. ++|+|-+. ...++||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~E--kYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNE--KYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCcc--ceEEEecCCccccCcccCCCceEEEE
Confidence 34678999999999987665 8999866656666665 65 58889999999 79998552 2579999
Q ss_pred EccCCeEEEEEEcC--CCCeE-EEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457 110 DTRSFHEVWSVTAG--SQEIF-CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA 186 (389)
Q Consensus 110 d~~~~~~~~~~~~~--~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 186 (389)
|+.+|...+.|... ...++ -+.||.++++++.-.. ..|.||+..+..++..-. -.-..|....|+|.+ ++||-=
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~-~llAYw 364 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-LKISGIRDFSWSPTS-NLLAYW 364 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-cCCccccCcccCCCc-ceEEEE
Confidence 99999998888763 33333 3578866666655444 789999977654432222 234568888999987 366643
Q ss_pred eCC-----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec----------CCcEEEEEcCCCceeE
Q 016457 187 SVD-----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH----------IETLSIWDWKDGQNVA 251 (389)
Q Consensus 187 ~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~ 251 (389)
+.. ..+.+..+.++ ..++...-++-.=..+-|- .+|++|+.--. -..+.|+.++......
T Consensus 365 tpe~~~~parvtL~evPs~----~~iRt~nlfnVsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv 439 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSK----REIRTKNLFNVSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV 439 (698)
T ss_pred cccccCCcceEEEEecCcc----ceeeeccceeeeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence 321 12344444322 1222222222222334454 56666654321 1235555555443322
Q ss_pred EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC-ceEEEEEeccCCccccCCCeEEEecccceeeeeccCCC
Q 016457 252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA-GTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMP 330 (389)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d-g~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 330 (389)
.... -...|...+|-|.|+++.+++|-.. .++.+|.+++... ...++..+.. ...+.+
T Consensus 440 e~ve------------lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~--~~~lVk~~dk---~~~N~v---- 498 (698)
T KOG2314|consen 440 EVVE------------LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK--KPSLVKELDK---KFANTV---- 498 (698)
T ss_pred eeee------------cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC--chhhhhhhcc---cccceE----
Confidence 2222 2378999999999998777776443 5789998884221 1112333331 333556
Q ss_pred cccCCCCCCCceeEEEe---cCCCeEEEEeccC
Q 016457 331 SVQGRPAQSHGIFGWTG---GEDGRLCCWLSDD 360 (389)
Q Consensus 331 ~~~~~~~s~~~~~l~s~---~~dg~v~iW~~~~ 360 (389)
.|+|.|++++.+ |..|.+.++|.+-
T Consensus 499 -----fwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 499 -----FWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred -----EEcCCCcEEEEEEecccccceEEEecch
Confidence 899999998886 4678999999984
No 271
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.5e-10 Score=100.62 Aligned_cols=224 Identities=8% Similarity=-0.033 Sum_probs=133.2
Q ss_pred eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE-EEEecCC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457 61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL-HSCSSDG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD 137 (389)
Q Consensus 61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 137 (389)
.|.+.|.+.++. ..+......+..-+|+|++....+ ++...+| .|.+.++.+++...... ........+|+|+++
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCC
Confidence 677778765443 334444556678899999841113 2444444 57777887775443322 344556789999999
Q ss_pred eEEEeec-CC----eEEEEECcCC--ceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCCcEEEE--ecCCCCCCCccc
Q 016457 138 YLLAAGC-GS----QIQFWDWRNK--KQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDGLICTF--DTGGDINDDDLL 207 (389)
Q Consensus 138 ~l~~~~~-d~----~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~--d~~~~~~~~~~~ 207 (389)
.|+..+. +| .+..|++..+ .....+...........+|+|+|+ .|+..+ .+|...+| ++.... ...
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~-~Laf~s~~~g~~~ly~~~~~~~g---~~~ 319 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGT-RLVFVSNKDGRPRIYIMQIDPEG---QSP 319 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCC-EEEEEECCCCCceEEEEECcccc---cce
Confidence 9887764 22 3444777653 122333312223456789999996 665554 46655555 443211 112
Q ss_pred eeeeccCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeE
Q 016457 208 ESVINVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENL 284 (389)
Q Consensus 208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 284 (389)
..+......+....|+ ++++.|+..+.+ ..|.+||+.+++....... ...+....|+|||+.+
T Consensus 320 ~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-------------~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 320 RLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-------------PENKESPSWAIDSLHL 385 (428)
T ss_pred EEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-------------CCCccceEECCCCCEE
Confidence 3333344566788999 677777665543 3799999988865433221 1345668899999843
Q ss_pred EEEEecC--CceEEEEEeccCCc
Q 016457 285 WVIGGTG--AGTVGYFPVNYGGA 305 (389)
Q Consensus 285 ~l~~g~~--dg~i~i~~~~~~~~ 305 (389)
++ +... ...|+++++.+++.
T Consensus 386 ~f-~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 386 VY-SAGNSNESELYLISLITKKT 407 (428)
T ss_pred EE-EECCCCCceEEEEECCCCCE
Confidence 32 3322 35788888887654
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=6.9e-11 Score=105.13 Aligned_cols=248 Identities=12% Similarity=0.042 Sum_probs=183.0
Q ss_pred cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCC----------CCEEEEEecCCeEEE
Q 016457 39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPST----------PHVLHSCSSDGTIRA 108 (389)
Q Consensus 39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~----------~~~l~s~~~dg~i~i 108 (389)
..-.++.|+|.| +||.|+ ...|.+-|..+.+.++.+.-|...|+.+.|.|... .-+|+++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 335678899988 888887 56799999999999999999999999999988432 136788888999999
Q ss_pred EEccCCeEEEEEEcCCCCeEEEEEeCC---C-CeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457 109 WDTRSFHEVWSVTAGSQEIFCFSFGGS---T-DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 109 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 184 (389)
||...+..+..++.+..++..++|-+. . ..+++-.....|.+|+..+|+...... .......|+.+.|-....+.
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeeeeCCCCcceEE
Confidence 999999998899999999999998753 2 346666668899999999999998887 55567788999998766677
Q ss_pred EEeCCCcEEEEecCCCCCCCccceeee---ccCC-------------------------ceeeEEEecCCCcEEEEEecC
Q 016457 185 SASVDGLICTFDTGGDINDDDLLESVI---NVGT-------------------------SVGKVGFFGETNKHLWCLTHI 236 (389)
Q Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~-------------------------~i~~~~~~~~~~~~l~~~~~d 236 (389)
.-+..|.+.+-+.-...+...+.+.+. .|.+ ....++|+| .-+.++.....
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p-~~rn~lfi~~p 251 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP-HWRNILFITFP 251 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh-hhhceEEEEec
Confidence 777788887777653322211111111 1110 012345664 33344445566
Q ss_pred CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 237 ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 237 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
..+.++|++-..++....-.+ +.+.-+.+-|++++-.|+++-.||.+.+|--+.
T Consensus 252 rellv~dle~~~~l~vvpier------------~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIER------------GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cceEEEcchhhceeEEEEecc------------CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 789999999888887776543 555566777777665889999999999996554
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.39 E-value=1.2e-09 Score=105.06 Aligned_cols=299 Identities=15% Similarity=0.071 Sum_probs=188.2
Q ss_pred cCCCCeEEEE----ecCceeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCC---------------C------
Q 016457 17 CDNVNSIKRF----GLKNSIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV---------------T------ 69 (389)
Q Consensus 17 ~~~~~~i~~w----~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~---------------~------ 69 (389)
+..+|.|.+. +.........| +.+|.+++||||+..|+..+.++++.+.+-. .
T Consensus 93 ~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsV 172 (928)
T PF04762_consen 93 ALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSV 172 (928)
T ss_pred EECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeee
Confidence 4456777777 55555555555 8899999999999999999999988886421 0
Q ss_pred --ceeeeeecC------------------------CCCcEEEEEEeCCCCCCEEEEEec---C---CeEEEEEccCCeEE
Q 016457 70 --GQYSGECKG------------------------HSSTVNQISFSGPSTPHVLHSCSS---D---GTIRAWDTRSFHEV 117 (389)
Q Consensus 70 --~~~~~~~~~------------------------~~~~v~~i~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~ 117 (389)
|+....|.| +.+.-..|+|..|| .++|+.+. . ..+|||+-+ |...
T Consensus 173 GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG--~yFAVss~~~~~~~~R~iRVy~Re-G~L~ 249 (928)
T PF04762_consen 173 GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDG--EYFAVSSVEPETGSRRVIRVYSRE-GELQ 249 (928)
T ss_pred ccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCC--cEEEEEEEEcCCCceeEEEEECCC-ceEE
Confidence 011111111 22244578899999 79888764 2 479999954 6654
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceeeeeee---cccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVACLEE---SHVEDVTQVHFVPNNQNKVVSASVDGL 191 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~ 191 (389)
.+-+.-.+--.+++|.|.|+.++++-. ...|.+|. ++|-.-..|.. .....|..|.|++++. .|+....|.
T Consensus 250 stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~- 326 (928)
T PF04762_consen 250 STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR- 326 (928)
T ss_pred eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-
Confidence 444433344457899999988877765 34677776 45544444431 3456799999999995 888877555
Q ss_pred EEEEecCCCCCCCccceeeec--cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457 192 ICTFDTGGDINDDDLLESVIN--VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDV 269 (389)
Q Consensus 192 i~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (389)
|.+|-..+- ...++.... ....+..+.|+|.+...|...+.+|.+..++..-. ..
T Consensus 327 vqLWt~~NY---HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-----v~--------------- 383 (928)
T PF04762_consen 327 VQLWTRSNY---HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-----VS--------------- 383 (928)
T ss_pred ceEEEeeCC---EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE-----EE---------------
Confidence 999988732 112222222 23345569999877778888888788877765210 00
Q ss_pred CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecC
Q 016457 270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGE 349 (389)
Q Consensus 270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~ 349 (389)
.+-...|++.. .++.- ....+.+-.+...-. .+|.....-.-...|.++ +|++++..+++-..
T Consensus 384 ---~s~~~~~~D~g-~vaVI-DG~~lllTpf~~a~V---PPPMs~~~l~~~~~v~~v---------af~~~~~~~avl~~ 446 (928)
T PF04762_consen 384 ---RSPGSSPNDNG-TVAVI-DGNKLLLTPFRRAVV---PPPMSSYELELPSPVNDV---------AFSPSNSRFAVLTS 446 (928)
T ss_pred ---ecCCCCccCce-EEEEE-eCCeEEEecccccCC---CchHhceEEcCCCCcEEE---------EEeCCCCeEEEEEC
Confidence 01112233332 12222 233566766665443 233322221234677888 99999887888889
Q ss_pred CCeEEEEeccCC
Q 016457 350 DGRLCCWLSDDS 361 (389)
Q Consensus 350 dg~v~iW~~~~~ 361 (389)
||.|.+|..+..
T Consensus 447 d~~l~~~~~~~~ 458 (928)
T PF04762_consen 447 DGSLSIYEWDLK 458 (928)
T ss_pred CCCEEEEEecCC
Confidence 999999997654
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=5.4e-12 Score=107.98 Aligned_cols=211 Identities=16% Similarity=0.176 Sum_probs=149.1
Q ss_pred eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCC-------ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457 34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT-------GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105 (389)
Q Consensus 34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~ 105 (389)
.+.| ...|..++--.+.+.+++++.|.+|++|.++. ..+..+++.|+.+|.++.|..+. .+++++ ||.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l--r~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL--RSIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc--ceeeec--cCc
Confidence 3445 66777777666667899999999999999853 23566788999999999999877 566654 788
Q ss_pred EEEEEccCCeEEEEEEcC--CCCeEEEEEeCC--CCeEEEeec-CCeEEEEECcCCceeeeee----ecccCCeeEEEEe
Q 016457 106 IRAWDTRSFHEVWSVTAG--SQEIFCFSFGGS--TDYLLAAGC-GSQIQFWDWRNKKQVACLE----ESHVEDVTQVHFV 176 (389)
Q Consensus 106 i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~ 176 (389)
|.+||.--++++..+... .+.+..+..-|+ ...+++++. ..+|+++|.+..+..-.++ .+....+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999999888776644321 233444444333 334444433 8899999999887665554 1334568999999
Q ss_pred cCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEE-EEcCCCceeEEeec
Q 016457 177 PNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSI-WDWKDGQNVASFEN 255 (389)
Q Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i-~d~~~~~~~~~~~~ 255 (389)
+.| |+++++-.+|.|.+.|.++++ .+......+-....++- |..+.|+....|.++.+ |...++....+...
T Consensus 886 ~~G-N~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqlaa--psdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 886 DKG-NKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLAA--PSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred cCc-chhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhcC--chhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 999 599999999999999999763 33333333333333333 55677888888888888 88777765555443
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.36 E-value=5.1e-10 Score=95.03 Aligned_cols=280 Identities=13% Similarity=0.093 Sum_probs=181.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-------------
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG------------- 104 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg------------- 104 (389)
.-++..++|||.|.+|++.... .|.+|.-..+..+..+. | ..|..+.|+|++ .+|.+=+...
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~--kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNE--KYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred CcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCccc--ceeeeeccCCccChhhccCCccc
Confidence 6778899999999999988755 49999977766555554 3 468999999999 7998865433
Q ss_pred --eEEEEEccCCeEEEEEEcCCCC--eE-EEEEeCCCCeEEEeecCCeEEEEECcCCcee-eeeeecccCCeeEEEEecC
Q 016457 105 --TIRAWDTRSFHEVWSVTAGSQE--IF-CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV-ACLEESHVEDVTQVHFVPN 178 (389)
Q Consensus 105 --~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~ 178 (389)
.+.+||+.++..+..+.....+ .+ -+.|+-++.+.+-. ....++|+++ +.... ..+..-....|....|+|.
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 4899999999999999876555 44 56777555554433 3468999997 33221 1111011355788888887
Q ss_pred CCC-eEEE-----EeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe-----------cCCcEEE
Q 016457 179 NQN-KVVS-----ASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT-----------HIETLSI 241 (389)
Q Consensus 179 ~~~-~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----------~d~~i~i 241 (389)
+.. .|+. .+..+.+++|.+..+. .+....-.+-.-..+.|. ..+++|++-. ....++|
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s----~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNS----VLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCC----eeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEEE
Confidence 421 2333 3457788888887321 121111112223456676 5555554321 1246777
Q ss_pred EEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccce
Q 016457 242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA 321 (389)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~ 321 (389)
+++....+.-.. . -.++|.+.+|.|.++++-+++|-.+..+.++|+... + ...++ ..
T Consensus 260 ~~~~e~~i~V~~-~------------~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l------~~~~P---e~ 316 (561)
T COG5354 260 LRITERSIPVEK-D------------LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L------RFYFP---EQ 316 (561)
T ss_pred Eeecccccceec-c------------ccccceeeeecccCCceeEEecccccceeecccccc-e------EEecC---Cc
Confidence 877633322222 2 348999999999999988889899999999999864 2 12222 12
Q ss_pred eeeeccCCCcccCCCCCCCceeEEEecCC---CeEEEEeccCC
Q 016457 322 VVRSVLPMPSVQGRPAQSHGIFGWTGGED---GRLCCWLSDDS 361 (389)
Q Consensus 322 ~v~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~v~iW~~~~~ 361 (389)
.=+.+ .|||.+++++.+|-| |.+-+|+....
T Consensus 317 ~rNT~---------~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 317 KRNTI---------FFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccccc---------cccCcccEEEEecCCccccceEEeccCCc
Confidence 22333 677888877776643 46777777655
No 276
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.36 E-value=1.5e-08 Score=83.93 Aligned_cols=223 Identities=15% Similarity=0.093 Sum_probs=146.4
Q ss_pred EEeecC-CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe-CCCCCCEEEEEecCCeEEEEEccCCeEEEEE
Q 016457 43 EIVPKN-DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS-GPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120 (389)
Q Consensus 43 ~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 120 (389)
+..|.+ ++.++++-...+.|..|+..+++... +.... ...+++. +++ .|+.+...+ +.++|+.+++....+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g---~l~v~~~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG---RLYVADSGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS---EEEEEETTC-EEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC---EEEEEEcCc-eEEEecCCCcEEEEe
Confidence 567888 66677776678999999998775543 22222 6677777 555 566666655 566699888655444
Q ss_pred Ec-----CCCCeEEEEEeCCCCeEEEeecC--------CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457 121 TA-----GSQEIFCFSFGGSTDYLLAAGCG--------SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS 187 (389)
Q Consensus 121 ~~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 187 (389)
.. .....+.+++.|++...++.... |.|..++.. ++...... .-...+.|+|+|+++.++++-+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEET
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeeccc
Confidence 43 34668899999888755554432 557777776 44433333 3456789999999964455677
Q ss_pred CCCcEEEEecCCCCCCCccceee---eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457 188 VDGLICTFDTGGDINDDDLLESV---INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW 264 (389)
Q Consensus 188 ~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 264 (389)
..+.|..|++............+ .........+++. .++++.++....+.|.+++.. ++.+..+...
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-------- 223 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPD-GKLLREIELP-------- 223 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--------
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--------
Confidence 78899999997432111111222 1122347889998 678877777788999999987 8888877752
Q ss_pred cCCCCCceeeecc-cCCCCeEEEEEe
Q 016457 265 TLDDVDYFVDCHY-PGEGENLWVIGG 289 (389)
Q Consensus 265 ~~~~~~~i~~~~~-~~~~~~~~l~~g 289 (389)
...+++++| -++.+.+|+.++
T Consensus 224 ----~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 224 ----VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ----SSSEEEEEEESTTSSEEEEEEB
T ss_pred ----CCCEEEEEEECCCCCEEEEEeC
Confidence 257889999 466676666554
No 277
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=2e-08 Score=82.19 Aligned_cols=270 Identities=10% Similarity=0.113 Sum_probs=174.0
Q ss_pred CCeEEEEecCc------eeeeeecCcceEEEeecCCCCeEEEEecC---CeEEEEeCCC--ceeee--eecCCCCcEEEE
Q 016457 20 VNSIKRFGLKN------SIQTNFGDDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVT--GQYSG--ECKGHSSTVNQI 86 (389)
Q Consensus 20 ~~~i~~w~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~--~~~~~--~~~~~~~~v~~i 86 (389)
.+-|++|++.+ .+......+.++-|+|+|+++.|.++-.+ |.|.-|.++. |++.. .......+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56689999863 22222237788899999999999988664 6777777664 54322 222222334789
Q ss_pred EEeCCCCCCEEEEEe-cCCeEEEEEccC-CeEEE--EEEcCCCC----------eEEEEEeCCCCeEEEeec-CCeEEEE
Q 016457 87 SFSGPSTPHVLHSCS-SDGTIRAWDTRS-FHEVW--SVTAGSQE----------IFCFSFGGSTDYLLAAGC-GSQIQFW 151 (389)
Q Consensus 87 ~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~iw 151 (389)
++++++ ++++++. .-|.|.++-++. |.... .+..|.+. +.+..+.|+++++++..- --.|.+|
T Consensus 95 svd~~g--~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 95 SVDEDG--RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EECCCC--CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 999998 6888776 457899998865 43221 12223333 788899999999998876 4689999
Q ss_pred ECcCCceeeeee--ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee------ccCCceeeEEEe
Q 016457 152 DWRNKKQVACLE--ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI------NVGTSVGKVGFF 223 (389)
Q Consensus 152 d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~~~i~~~~~~ 223 (389)
++..++....-. -.....-+.|.|+|+++...++.--+++|.+|...........+..+. ........|.++
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 999775432111 123456789999999984455555699999999986422222222221 123456778888
Q ss_pred cCCCcEEEEEec-CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC-ceEEEEEec
Q 016457 224 GETNKHLWCLTH-IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA-GTVGYFPVN 301 (389)
Q Consensus 224 ~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d-g~i~i~~~~ 301 (389)
++|++|.++.. ...|.+|.+....-...+..... .+........+++.++ +|+++..+ ..|.+|.++
T Consensus 253 -~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~--------teg~~PR~F~i~~~g~--~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 253 -PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP--------TEGQFPRDFNINPSGR--FLIAANQKSDNITVFERD 321 (346)
T ss_pred -CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec--------cCCcCCccceeCCCCC--EEEEEccCCCcEEEEEEc
Confidence 78888887754 34788888764422222221110 0334467889999988 66666554 578888775
Q ss_pred c
Q 016457 302 Y 302 (389)
Q Consensus 302 ~ 302 (389)
.
T Consensus 322 ~ 322 (346)
T COG2706 322 K 322 (346)
T ss_pred C
Confidence 4
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.35 E-value=4.8e-09 Score=102.92 Aligned_cols=257 Identities=10% Similarity=0.094 Sum_probs=158.0
Q ss_pred EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEc-CC-------------CCeEEEEEeCCCCeEEEeec-CCeE
Q 016457 84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA-GS-------------QEIFCFSFGGSTDYLLAAGC-GSQI 148 (389)
Q Consensus 84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~-------------~~v~~~~~~~~~~~l~~~~~-d~~i 148 (389)
..+++.+.+. .++++-..++.|++||.. +..+..+.. .. .....++++++++.++++.. ++.|
T Consensus 571 ~gvavd~~~g-~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNN-RLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCC-eEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 3577876532 577777788899999975 444444432 11 23578999988887777665 6789
Q ss_pred EEEECcCCceeeeeee-cc---------------cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec
Q 016457 149 QFWDWRNKKQVACLEE-SH---------------VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN 212 (389)
Q Consensus 149 ~iwd~~~~~~~~~~~~-~~---------------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 212 (389)
+.+|+.++. +.++.. +. -.....++++|++..++++.+.++.|++||..++. +..+.+
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-----v~~~~G 722 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-----TRVFSG 722 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-----EEEEec
Confidence 999987654 333320 00 11246799999554577888888999999987542 111100
Q ss_pred ---------------cCCceeeEEEecCCCc-EEEEEecCCcEEEEEcCCCceeEEeecccccccC--Ccc-------CC
Q 016457 213 ---------------VGTSVGKVGFFGETNK-HLWCLTHIETLSIWDWKDGQNVASFENARSLASD--SWT-------LD 267 (389)
Q Consensus 213 ---------------~~~~i~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~-------~~ 267 (389)
.-.....++++ +++. ++++.+.++.|++||+.++.......+....... .+. ..
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 11245678999 5555 5666667789999999876532211110000000 000 00
Q ss_pred CCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccce-------eeeeccCCCcccCCCCCCC
Q 016457 268 DVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA-------VVRSVLPMPSVQGRPAQSH 340 (389)
Q Consensus 268 ~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~~s~~ 340 (389)
.-.....++++++|+ ++++-+.++.|++||..++.. ..+. +... ....-...+..+ +++++
T Consensus 802 ~l~~P~Gvavd~dG~--LYVADs~N~rIrviD~~tg~v-------~tia-G~G~~G~~dG~~~~a~l~~P~GI--avd~d 869 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQ--IYVADSYNHKIKKLDPATKRV-------TTLA-GTGKAGFKDGKALKAQLSEPAGL--ALGEN 869 (1057)
T ss_pred hccCCceeeEeCCCc--EEEEECCCCEEEEEECCCCeE-------EEEe-ccCCcCCCCCcccccccCCceEE--EEeCC
Confidence 112345788999987 677888899999999987664 2222 1110 000011112222 88999
Q ss_pred ceeEEEecCCCeEEEEeccCC
Q 016457 341 GIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 341 ~~~l~s~~~dg~v~iW~~~~~ 361 (389)
|+.+++-+.++.|++|+++..
T Consensus 870 G~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 870 GRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCEEEEECCCCEEEEEECCCC
Confidence 999999999999999999875
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.34 E-value=2.2e-09 Score=83.96 Aligned_cols=245 Identities=10% Similarity=0.061 Sum_probs=157.3
Q ss_pred CCCeEEEEecCCeEEEEeCCCceee-eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe
Q 016457 49 DWSLMAVSLSTNVVKLYSPVTGQYS-GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI 127 (389)
Q Consensus 49 ~~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 127 (389)
...+||.|+..|...+|...+.+.. +....|...|+-+.-..+.. --+..++.|.++++.++..+.....+....-..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~-~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ 161 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK-FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQ 161 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc-cceeeccCCcceeEEEEecCcccceeeccccce
Confidence 3458999999999999998865433 33344555443332222222 346667788899999887554433333222348
Q ss_pred EEEEEeCCCCeEEEeecCCeEEEEECcCC-ceeee-eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC-C
Q 016457 128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNK-KQVAC-LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND-D 204 (389)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~ 204 (389)
.++++++++..+.+.+....|..|.+... +.+.. ......+.-.+..|+.... .+|+++.||++.|||+|..... .
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchh
Confidence 89999999999999999999999988643 33222 2223445567889999885 9999999999999999954311 1
Q ss_pred ccceeeeccCCceeeEEEecCCC-cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCe
Q 016457 205 DLLESVINVGTSVGKVGFFGETN-KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGEN 283 (389)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 283 (389)
........|.+.+..+.|++.+. ++|+..-.-+.+.+.|++++...+.+....... .......+....|+.++..
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~----~~~~tq~ifgt~f~~~n~s 316 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVE----RKHNTQHIFGTNFNNENES 316 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccc----ccccccccccccccCCCcc
Confidence 12222344788999999984322 356666667899999999987655544321110 0002234777888888775
Q ss_pred EEEEEecCCceEEEEEecc
Q 016457 284 LWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 284 ~~l~~g~~dg~i~i~~~~~ 302 (389)
.++.+. + .+.-|++.+
T Consensus 317 ~~v~~e--~-~~ae~ni~s 332 (344)
T KOG4532|consen 317 NDVKNE--L-QGAEYNILS 332 (344)
T ss_pred cccccc--h-hhheeeccc
Confidence 443332 2 244555544
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=2.9e-11 Score=106.84 Aligned_cols=272 Identities=17% Similarity=0.228 Sum_probs=185.5
Q ss_pred ccccCCCCeEEEEecC---ceeeeeec--CcceEEEeecCCC--CeEEEEecCCeEEEEeCCC---ceeeeeecCCCCcE
Q 016457 14 SQSCDNVNSIKRFGLK---NSIQTNFG--DDYVFEIVPKNDW--SLMAVSLSTNVVKLYSPVT---GQYSGECKGHSSTV 83 (389)
Q Consensus 14 ~~s~~~~~~i~~w~~~---~~~~~~~~--~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~~~~---~~~~~~~~~~~~~v 83 (389)
.+.++..| +.+.|+. ++.+-+.+ .-.|-...|+|.. .+-++......-.+|++.. ......+.+|...|
T Consensus 39 i~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsrai 117 (1081)
T KOG0309|consen 39 IVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAI 117 (1081)
T ss_pred hhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccce
Confidence 34444444 3444554 34444554 4456677888754 4556666677788998753 23445677899999
Q ss_pred EEEEEeCCCCCCEEEEEecCCeEEEEEccCC-eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeee
Q 016457 84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVAC 161 (389)
Q Consensus 84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~ 161 (389)
+.+-|+|... ..+++++.|-.+..||+++. .++..+..-......++|+-.++.+++.+..+.|.+||++.+. ++..
T Consensus 118 td~n~~~q~p-dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s 196 (1081)
T KOG0309|consen 118 TDINFNPQHP-DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCS 196 (1081)
T ss_pred eccccCCCCC-cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEE
Confidence 9999998764 89999999999999999875 3555555556778889999889999999999999999999764 5667
Q ss_pred eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc-EEEEEecCCcEE
Q 016457 162 LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK-HLWCLTHIETLS 240 (389)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~i~ 240 (389)
++ +|...|+.++|+..-...+.+.+.|++|+.||...... ..........+|..-.+.|-... ++.-.-.+..+.
T Consensus 197 ~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~---e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~ 272 (1081)
T KOG0309|consen 197 LK-GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT---ESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVP 272 (1081)
T ss_pred ec-ccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc---ccceeccccCcceeccccccCceeEeccccCCeeee
Confidence 76 78899999999876545899999999999999984432 22222334455555555432111 111111122333
Q ss_pred ---------EEEcCC-CceeEEeecccccccCCccCCCCCceeeeccc--------CCCCeEEEEEecCCceEEEEEecc
Q 016457 241 ---------IWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCHYP--------GEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 241 ---------i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
.|+..+ .++++.|.+ |.+.|....|- .+.+.+-|++-+.|..+++|.+..
T Consensus 273 ~~~c~n~d~e~n~~~~~~pVh~F~G------------H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 273 QLRCENSDLEWNVFDLNTPVHTFVG------------HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eccccchhhhhccccCCcceeeecC------------cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 344333 357788887 55666554443 344556789999999999998875
Q ss_pred C
Q 016457 303 G 303 (389)
Q Consensus 303 ~ 303 (389)
.
T Consensus 341 ~ 341 (1081)
T KOG0309|consen 341 Q 341 (1081)
T ss_pred H
Confidence 3
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.33 E-value=7.4e-09 Score=101.62 Aligned_cols=255 Identities=10% Similarity=0.047 Sum_probs=158.3
Q ss_pred EEeecCC-CCeEEEEecCCeEEEEeCCCceeeeeecC--------------CCCcEEEEEEeCCCCCCEEEEEe-cCCeE
Q 016457 43 EIVPKND-WSLMAVSLSTNVVKLYSPVTGQYSGECKG--------------HSSTVNQISFSGPSTPHVLHSCS-SDGTI 106 (389)
Q Consensus 43 ~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------------~~~~v~~i~~~~~~~~~~l~s~~-~dg~i 106 (389)
.++++++ +.++++-..++.|+++|.. ++.+..+.+ +-.....|++.+++ +.|+.+. ..+.|
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g--n~LYVaDt~n~~I 648 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK--NLLYVADTENHAL 648 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC--CEEEEEeCCCceE
Confidence 5778875 4455555667899999976 444433322 11235788999877 5555544 45789
Q ss_pred EEEEccCCeEEEEEEcC-----------------CCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeeee-e---
Q 016457 107 RAWDTRSFHEVWSVTAG-----------------SQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACLE-E--- 164 (389)
Q Consensus 107 ~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~-~--- 164 (389)
+++|+.++. +.++.+. -.....++++|.++.++++. .++.|++||..++... .+. .
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 999987654 3333221 01346799998666665554 5789999998776432 111 0
Q ss_pred ----c------ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC---------ccceeeec--------cCCce
Q 016457 165 ----S------HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD---------DLLESVIN--------VGTSV 217 (389)
Q Consensus 165 ----~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---------~~~~~~~~--------~~~~i 217 (389)
+ .-.....|+++|++..++++-+.++.|++||+.++.... .....+-. .-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0 112356799999986466667778999999998542100 00000000 01124
Q ss_pred eeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccc-cccCCccCCCCCceeeecccCCCCeEEEEEecCCceEE
Q 016457 218 GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARS-LASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVG 296 (389)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~ 296 (389)
..++++ +++.++++-+.++.|++||..++........... ..........-.....++++++|+ ++++-+.++.|+
T Consensus 807 ~Gvavd-~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~--lyVaDt~Nn~Ir 883 (1057)
T PLN02919 807 LGVLCA-KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR--LFVADTNNSLIR 883 (1057)
T ss_pred ceeeEe-CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC--EEEEECCCCEEE
Confidence 578888 6778888888899999999987765543321100 000000011223567889999997 677888999999
Q ss_pred EEEeccCCc
Q 016457 297 YFPVNYGGA 305 (389)
Q Consensus 297 i~~~~~~~~ 305 (389)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988754
No 282
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.33 E-value=7e-11 Score=91.69 Aligned_cols=199 Identities=12% Similarity=0.131 Sum_probs=125.2
Q ss_pred eEEEeecCCCCeEEEEecCCeEEEEeCCCceeee------------eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457 41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG------------ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108 (389)
Q Consensus 41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~------------~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i 108 (389)
|+.+.++-+- .|+++..++.+.....-++.+.. .+..|+++-.+=+.+-.+ +-+++++.||.+.+
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~--t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD--NRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC--CceEecCCCceEEE
Confidence 6777776554 66777667666665544433322 222233222222222223 47999999999999
Q ss_pred EEccCCeE-EEEEEcCCCCeEEEEEeCCCCeEEEeec-----CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCe
Q 016457 109 WDTRSFHE-VWSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNK 182 (389)
Q Consensus 109 wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 182 (389)
++.+.-.. ...+..-...-.+.+....++.+.+++. -+..+.|+++..+.+..-. .....|++++-+|...++
T Consensus 116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~ 194 (319)
T KOG4714|consen 116 FSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHL 194 (319)
T ss_pred EechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCcccccE
Confidence 99775211 1111111111112222224455554433 2455666665433222111 123449999999998889
Q ss_pred EEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457 183 VVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD 246 (389)
Q Consensus 183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 246 (389)
+++|+.||.+.+||.+.. ..+...+..|+.++..+-|+|.++..|++++.||.+-.||..+
T Consensus 195 v~cgt~dg~~~l~d~rn~---~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNV---AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEecCCCeEEEEEcccc---cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999999954 3455666789999999999999999999999999999999764
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.31 E-value=4.9e-08 Score=82.69 Aligned_cols=172 Identities=15% Similarity=0.092 Sum_probs=125.8
Q ss_pred CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-eEEEEEccCCeEEEEEEcCCCCe
Q 016457 49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG-TIRAWDTRSFHEVWSVTAGSQEI 127 (389)
Q Consensus 49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v 127 (389)
+|.+++..+ .|...|.+...+-.++. +|...|.-..+..++ +-++.|..|| .+-|+|.++++.. .+...-+.|
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I 404 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNI 404 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccCC--cceEEeccCCceEEEEecCCceEE-EeeCCccce
Confidence 567888777 67788887665544332 467779888888777 5888899998 8999999877654 445556899
Q ss_pred EEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC----cEEEEecCCCCCC
Q 016457 128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG----LICTFDTGGDIND 203 (389)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~ 203 (389)
.++..+|+++.++++.....|.+.|+.++.....-+ ...+-|+.++|+|+++ ++|-+--+| .|++||+.+++
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~K-- 480 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGK-- 480 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCe--
Confidence 999999999999999889999999999987654333 5678899999999996 888877665 58999998643
Q ss_pred CccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457 204 DDLLESVINVGTSVGKVGFFGETNKHLWCLT 234 (389)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 234 (389)
+.........=.+-+|. +++++|.--+
T Consensus 481 ---iy~vTT~ta~DfsPaFD-~d~ryLYfLs 507 (668)
T COG4946 481 ---IYDVTTPTAYDFSPAFD-PDGRYLYFLS 507 (668)
T ss_pred ---EEEecCCcccccCcccC-CCCcEEEEEe
Confidence 22222222222344566 5666554443
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.8e-11 Score=104.82 Aligned_cols=249 Identities=13% Similarity=0.127 Sum_probs=163.0
Q ss_pred eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC-------CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC
Q 016457 73 SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG 145 (389)
Q Consensus 73 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 145 (389)
+..+.||+..|..++--.+. +.+++++.|++|++|.++. ..+..+++.|+.+|.++.|..+...++ +.|
T Consensus 728 L~nf~GH~~~iRai~AidNE--NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNE--NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCD 803 (1034)
T ss_pred eecccCcHHHhHHHHhcccc--cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--ecc
Confidence 45678999999988776555 6899999999999999873 346778889999999999985544443 457
Q ss_pred CeEEEEECcCCceeeeeee-cccCCeeEEEEecC-CCCeEEEE-eCCCcEEEEecCCCCCCCc-cceeeeccCCceeeEE
Q 016457 146 SQIQFWDWRNKKQVACLEE-SHVEDVTQVHFVPN-NQNKVVSA-SVDGLICTFDTGGDINDDD-LLESVINVGTSVGKVG 221 (389)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~ 221 (389)
|.|++||.--++++.++.. ...+.+..+..-|+ .+.++++| +...+|+++|.+...-..+ .+......+..+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 9999999887877664431 22233444443343 22244444 7789999999996531110 1111123345678888
Q ss_pred EecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEE-EEe
Q 016457 222 FFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGY-FPV 300 (389)
Q Consensus 222 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i-~~~ 300 (389)
.. +.|+.++++-.+|.|.+.|.++|+.+..+.... -....++- |..+ +++....|..+.+ |..
T Consensus 884 Va-~~GN~lAa~LSnGci~~LDaR~G~vINswrpme------------cdllqlaa-psdq--~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 884 VA-DKGNKLAAALSNGCIAILDARNGKVINSWRPME------------CDLLQLAA-PSDQ--ALAQSALDHSLAVNWHA 947 (1034)
T ss_pred ec-cCcchhhHHhcCCcEEEEecCCCceeccCCccc------------chhhhhcC-chhH--HHHhhcccceeEeeehh
Confidence 88 788899999999999999999999888776532 22333332 3344 6777777888888 866
Q ss_pred ccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457 301 NYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD 359 (389)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~ 359 (389)
..+.. ..+.. ....+.. -...-|.-|+++.....+.+|.-.
T Consensus 948 ldgim------h~q~k-pppepah-----------flqsvgpSLV~a~~Gn~lgVYad~ 988 (1034)
T KOG4190|consen 948 LDGIM------HLQDK-PPPEPAH-----------FLQSVGPSLVTAQNGNILGVYADS 988 (1034)
T ss_pred cCCee------eeccC-CCCcchh-----------hhhccCceeEEeccCcEEEEEecc
Confidence 55432 11111 0001111 112334456888877788888643
No 285
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.27 E-value=3.7e-08 Score=87.50 Aligned_cols=261 Identities=11% Similarity=0.065 Sum_probs=157.1
Q ss_pred CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe--
Q 016457 50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI-- 127 (389)
Q Consensus 50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-- 127 (389)
+..++.++.++.+.-+|.++|+.+................ ++ .++.+..++.|..+|..+|+.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~---~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DG---LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CC---EEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 4567778889999999999999888776433222122222 33 67778889999999999999998887531111
Q ss_pred ---EEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC------CeeEEEEec--CCCCeEEEEeCCCcEEEEe
Q 016457 128 ---FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE------DVTQVHFVP--NNQNKVVSASVDGLICTFD 196 (389)
Q Consensus 128 ---~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~~~--~~~~~l~~~~~d~~i~i~d 196 (389)
.+-.. .++.+++++.+|.+..+|..+++.+.+....... ....+..+| .+. .++.++.+|.+..+|
T Consensus 196 ~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~~~g~l~ald 272 (394)
T PRK11138 196 RGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALAYNGNLVALD 272 (394)
T ss_pred cCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEEcCCeEEEEE
Confidence 11111 2456777888999999999999877654311100 000111111 132 677777899999999
Q ss_pred cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457 197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH 276 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (389)
..++....+ . ... ....+... +..++.++.++.+..+|..+++.+-...... + ....+..
T Consensus 273 ~~tG~~~W~----~-~~~-~~~~~~~~---~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----------~-~~~~sp~ 332 (394)
T PRK11138 273 LRSGQIVWK----R-EYG-SVNDFAVD---GGRIYLVDQNDRVYALDTRGGVELWSQSDLL----------H-RLLTAPV 332 (394)
T ss_pred CCCCCEEEe----e-cCC-CccCcEEE---CCEEEEEcCCCeEEEEECCCCcEEEcccccC----------C-CcccCCE
Confidence 987642111 1 111 11122332 3467888899999999999987654432210 0 1111111
Q ss_pred ccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457 277 YPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356 (389)
Q Consensus 277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW 356 (389)
.. +. +|+.++.+|.|+++|..+++. +..... ....+.+- + .+ . +..|+.++.||.|..+
T Consensus 333 v~--~g--~l~v~~~~G~l~~ld~~tG~~------~~~~~~-~~~~~~s~----P----~~-~-~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 333 LY--NG--YLVVGDSEGYLHWINREDGRF------VAQQKV-DSSGFLSE----P----VV-A-DDKLLIQARDGTVYAI 391 (394)
T ss_pred EE--CC--EEEEEeCCCEEEEEECCCCCE------EEEEEc-CCCcceeC----C----EE-E-CCEEEEEeCCceEEEE
Confidence 21 34 567888999999999998876 444331 11111111 0 11 2 3356788889999887
Q ss_pred ec
Q 016457 357 LS 358 (389)
Q Consensus 357 ~~ 358 (389)
++
T Consensus 392 ~~ 393 (394)
T PRK11138 392 TR 393 (394)
T ss_pred eC
Confidence 64
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.26 E-value=1.8e-10 Score=94.96 Aligned_cols=157 Identities=11% Similarity=0.069 Sum_probs=114.9
Q ss_pred ceEEEeecCCCCeEEEEecCCeEEEEeCCCce----eeeeecCCCCcEEEEEEeCCCCCCEEEE---EecCCeEEEEEcc
Q 016457 40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ----YSGECKGHSSTVNQISFSGPSTPHVLHS---CSSDGTIRAWDTR 112 (389)
Q Consensus 40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~~l~s---~~~dg~i~iwd~~ 112 (389)
.+..+..++.+++||++..+....++++.... +...+.. ...-+++.|..+. ..... ++....+.+|...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~--~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIRED--TSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeecc--ceEEEEeecCCceeeeeeccc
Confidence 34455678899999999988887777765432 2222221 2223444444443 23333 3445566677666
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcE
Q 016457 113 SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI 192 (389)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 192 (389)
.+. ...+-+|-+.++.++++|++..++++..|..|++-....-..+..+..+|+..|..++..++. .|++++.|++|
T Consensus 141 ~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tl 217 (390)
T KOG3914|consen 141 SGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTL 217 (390)
T ss_pred ccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCCcE
Confidence 533 334567889999999999999999999999999998887777777776899999999999875 69999999999
Q ss_pred EEEecCCCCC
Q 016457 193 CTFDTGGDIN 202 (389)
Q Consensus 193 ~i~d~~~~~~ 202 (389)
++||++++..
T Consensus 218 r~Wd~~sgk~ 227 (390)
T KOG3914|consen 218 RLWDITSGKL 227 (390)
T ss_pred EEEecccCCc
Confidence 9999998753
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=5e-11 Score=96.20 Aligned_cols=152 Identities=13% Similarity=0.204 Sum_probs=116.3
Q ss_pred eEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCce
Q 016457 138 YLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSV 217 (389)
Q Consensus 138 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i 217 (389)
+-++.|.+-.|-+-|++++... .+. ..+.|.++.|...++ ++..|+.+|.|..+|+|....-........-|++.|
T Consensus 226 yhfs~G~sqqv~L~nvetg~~q-sf~--sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv 301 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGHQQ-SFQ--SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV 301 (425)
T ss_pred eeecccccceeEEEEeeccccc-ccc--cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence 3477777889999999887433 332 567899999999884 999999999999999996643334455556699999
Q ss_pred eeEEEecCCCcEEEEEecCCcEEEEEcCCCce---eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce
Q 016457 218 GKVGFFGETNKHLWCLTHIETLSIWDWKDGQN---VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT 294 (389)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~ 294 (389)
+++....-++++|++.+.+|+|++||++.-++ +.++.+|.. ...-.-+-..+... ++++++.|..
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN----------~~a~l~~~v~~eeg--~I~s~GdDcy 369 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN----------LSAYLPAHVKEEEG--SIFSVGDDCY 369 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc----------cccccccccccccc--eEEEccCeeE
Confidence 99988744788999999999999999998777 888887431 12222233344444 7888999999
Q ss_pred EEEEEeccCCc
Q 016457 295 VGYFPVNYGGA 305 (389)
Q Consensus 295 i~i~~~~~~~~ 305 (389)
.+||.+..+++
T Consensus 370 tRiWsl~~ghL 380 (425)
T KOG2695|consen 370 TRIWSLDSGHL 380 (425)
T ss_pred EEEEecccCce
Confidence 99999998876
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.22 E-value=3.4e-10 Score=93.26 Aligned_cols=170 Identities=13% Similarity=0.135 Sum_probs=111.8
Q ss_pred eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC---cEEEEEcCC
Q 016457 170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE---TLSIWDWKD 246 (389)
Q Consensus 170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~ 246 (389)
...+..+|.++ +++++..+....+++++...+ ...............++.+. .+......+..-| .+.+|....
T Consensus 65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~-~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFI-REDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCce-EEEEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeee-eccceEEEEeecCCceeeeeecccc
Confidence 34456677775 888888888888888885432 11222222233344455555 3333444444434 444444433
Q ss_pred CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457 247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV 326 (389)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 326 (389)
+.+.-.+ +|...+++++++||++ +|+++..|..|+|-.....-. +..+.-||+..|..+
T Consensus 142 ~~~~~~l-------------GhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~------IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 142 GRCEPIL-------------GHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFV------IESFCLGHKEFVSTI 200 (390)
T ss_pred cCcchhh-------------hhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccc------hhhhccccHhheeee
Confidence 3333222 2889999999999998 999999999999987765433 455556999999999
Q ss_pred cCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcccchhhhhhHH
Q 016457 327 LPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINRSWISNAM 373 (389)
Q Consensus 327 ~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~~~~~~~~~~~ 373 (389)
+.-++.. |+|||.|++|++|++..+...++-.++.+.
T Consensus 201 ---------sl~~~~~-LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~~ 237 (390)
T KOG3914|consen 201 ---------SLTDNYL-LLSGSGDKTLRLWDITSGKLLDTCDLSSLV 237 (390)
T ss_pred ---------eeccCce-eeecCCCCcEEEEecccCCcccccchhHhh
Confidence 4433333 799999999999999999776666654443
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=5.7e-10 Score=98.67 Aligned_cols=238 Identities=11% Similarity=0.093 Sum_probs=157.6
Q ss_pred CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---------------eEEEEEEcCCCCeEEEEEeCCCCeEEEeec
Q 016457 80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGC 144 (389)
Q Consensus 80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 144 (389)
.....|++|+... .+++.|+.||.+++-.+.+. ..-+++.+|+..|.-+.|+.+...|-++..
T Consensus 14 nvkL~c~~WNke~--gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKES--GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CceEEEEEEcccC--CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 4568899999877 79999999999999987643 123567899999999999977777777777
Q ss_pred CCeEEEEECcCCceeeeee-ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEe
Q 016457 145 GSQIQFWDWRNKKQVACLE-ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFF 223 (389)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (389)
+|.|.+|-+-.+.-...+. ...++.|.+|+|+.+|. .+.....||.|.+=.+..+.--.+.+ .......+.|+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeL-----kg~~l~hv~ws 165 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKEL-----KGQLLAHVLWS 165 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhc-----chheccceeec
Confidence 9999999988776543322 23567799999999995 99999999999887776432111111 12234478898
Q ss_pred cCCCcEEEEEecCCcEEEEEcCCC-------ceeEEeeccc-----ccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457 224 GETNKHLWCLTHIETLSIWDWKDG-------QNVASFENAR-----SLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG 291 (389)
Q Consensus 224 ~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~ 291 (389)
++...++.+-.+|.+.+||.... .+.....+.- .++...|..+...+ .-|+.. .++.+-.
T Consensus 166 -~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~-----v~pdrP--~lavcy~ 237 (1189)
T KOG2041|consen 166 -EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQP-----VPPDRP--RLAVCYA 237 (1189)
T ss_pred -ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcccc-----CCCCCC--EEEEEEc
Confidence 66677777778899999997532 1111111111 12222232221111 124555 6788888
Q ss_pred CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC
Q 016457 292 AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED 350 (389)
Q Consensus 292 dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d 350 (389)
+|.+.|-.-.+... ..+. .-.-.|... .|+++|.+|+.+|.|
T Consensus 238 nGr~QiMR~eND~~-------Pvv~-dtgm~~vga---------kWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 238 NGRMQIMRSENDPE-------PVVV-DTGMKIVGA---------KWNHNGAVLAVCGND 279 (1189)
T ss_pred CceehhhhhcCCCC-------CeEE-ecccEeecc---------eecCCCcEEEEccCc
Confidence 89888876555433 1111 112445555 788888888888754
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=9e-08 Score=84.82 Aligned_cols=216 Identities=11% Similarity=0.045 Sum_probs=128.7
Q ss_pred CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec---CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC
Q 016457 60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS---DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136 (389)
Q Consensus 60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 136 (389)
..|.+-|.+... .+.+.... ......|+|++. ..++..+. +..|.++|+.+++...... ..+......|+|++
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~-~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQ-TAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCC-cEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 356666665333 33333233 778899999993 23554333 3468899998887655443 34566778899999
Q ss_pred CeEEEeec---CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCC--cEEEEecCCCCCCCccceee
Q 016457 137 DYLLAAGC---GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDG--LICTFDTGGDINDDDLLESV 210 (389)
Q Consensus 137 ~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~ 210 (389)
..++.... +..|.++|+.+++. ..+. .+........|+|+|+ .|+..+ ..+ .|+++|+.++. ...+
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT-~~~~~d~~p~~SPDG~-~I~F~Sdr~g~~~Iy~~dl~~g~-----~~rl 316 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTL-TQIT-NYPGIDVNGNFVEDDK-RIVFVSDRLGYPNIFMKKLNSGS-----VEQV 316 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcE-EEcc-cCCCccCccEECCCCC-EEEEEECCCCCceEEEEECCCCC-----eEeC
Confidence 88876544 46788889877754 3444 2333344568999997 554444 333 57788887553 1111
Q ss_pred eccCCceeeEEEecCCCcEEEEEecC---------CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457 211 INVGTSVGKVGFFGETNKHLWCLTHI---------ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG 281 (389)
Q Consensus 211 ~~~~~~i~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 281 (389)
...... ...|+ ++++.++..+.. ..|.+.|+.++.. ..+... .......|+|||
T Consensus 317 t~~g~~--~~~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-------------~~~~~p~~SPDG 379 (419)
T PRK04043 317 VFHGKN--NSSVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-------------GVNQFPRFSSDG 379 (419)
T ss_pred ccCCCc--CceEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-------------CCcCCeEECCCC
Confidence 111111 24788 667766655543 2678888877753 333321 122357899999
Q ss_pred CeEEEEEecC-CceEEEEEeccCC
Q 016457 282 ENLWVIGGTG-AGTVGYFPVNYGG 304 (389)
Q Consensus 282 ~~~~l~~g~~-dg~i~i~~~~~~~ 304 (389)
+.+++++... ...|.+.++....
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCCCe
Confidence 9554443322 2346677776543
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.20 E-value=1.1e-08 Score=80.14 Aligned_cols=243 Identities=8% Similarity=-0.036 Sum_probs=150.6
Q ss_pred CEEEEEecCCeEEEEEccCCeEE-EEEEcCCCCeEEEE-EeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeE
Q 016457 95 HVLHSCSSDGTIRAWDTRSFHEV-WSVTAGSQEIFCFS-FGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQ 172 (389)
Q Consensus 95 ~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 172 (389)
.+|+.|+..|...+|...+.+-. .....+...|+-+. .......++.++.|.++++.++.-+.....+- -..-.+.+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h-~~~~~~ns 163 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVH-NQNLTQNS 163 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceee-ccccceee
Confidence 48999999999999999865443 33333333332211 11123457777888888888877554333322 11234889
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccce-eeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457 173 VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLE-SVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA 251 (389)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 251 (389)
++++++++ ++++.+....|..|.+.... ..... ........-.+..|+ .....++++..||++.|||++......
T Consensus 164 ~~~snd~~-~~~~Vgds~~Vf~y~id~~s--ey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 164 LHYSNDPS-WGSSVGDSRRVFRYAIDDES--EYIENIYEAPTSDHGFYNSFS-ENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eEEcCCCc-eEEEecCCCcceEEEeCCcc--ceeeeeEecccCCCceeeeec-cCcceEEEEecCCcEEEEEecccccch
Confidence 99999996 99999999999999998432 11122 233344455677888 667789999999999999998754433
Q ss_pred EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeecc--CC
Q 016457 252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVL--PM 329 (389)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~ 329 (389)
..... ....|.+.+..+.|++-|.-=+|+..-.-+.+.+.|++++.. .+.+. ... ++. +.
T Consensus 240 ~~~ss-------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~------~q~I~-i~~----d~~~~~~ 301 (344)
T KOG4532|consen 240 AEISS-------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN------HQVIV-IPD----DVERKHN 301 (344)
T ss_pred hhhcc-------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce------eeEEe-cCc----ccccccc
Confidence 22211 111278999999999866422445554567899999998764 11111 000 010 11
Q ss_pred -CcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 330 -PSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 330 -~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
..++...|+.++.-+.+.+++ .+.=|++...
T Consensus 302 tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 302 TQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred ccccccccccCCCcccccccch-hhheeecccc
Confidence 112333677776666666544 4555666543
No 292
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.18 E-value=4.4e-08 Score=80.78 Aligned_cols=218 Identities=10% Similarity=0.045 Sum_probs=137.3
Q ss_pred CCeEEEEeCCCceeeeeecCC--CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC
Q 016457 59 TNVVKLYSPVTGQYSGECKGH--SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136 (389)
Q Consensus 59 d~~i~iw~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 136 (389)
+|.|..||..+|+.+....-- .....+.....+ ..+++++.++.|..||..+|+.+..+... ..+...... .+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~-~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG---GRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVV-DG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET---TEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEE-ET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC---CEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeee-cc
Confidence 689999999999998887531 122222233233 47888889999999999999999988863 222221222 56
Q ss_pred CeEEEeecCCeEEEEECcCCceeeeeeeccc---CCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc
Q 016457 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHV---EDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV 213 (389)
Q Consensus 137 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 213 (389)
+.+++++.++.|..+|.++++.+.+...... ...........+ ..++++..++.|..+|++++. .+-.....
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~----~~w~~~~~ 151 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGK----LLWKYPVG 151 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTE----EEEEEESS
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCc----EEEEeecC
Confidence 7888888888999999999999888421221 111222222235 388888889999999999764 22222221
Q ss_pred CCc----------eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCe
Q 016457 214 GTS----------VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGEN 283 (389)
Q Consensus 214 ~~~----------i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 283 (389)
... +..-... .++ .++.++.++.+..+|+.+++.+-... . ..+.. .....+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~-------------~~~~~-~~~~~~~- 213 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVI-SDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I-------------SGIYS-LPSVDGG- 213 (238)
T ss_dssp TT-SS--EEEETTEEEEEEC-CTT-EEEEECCTSSEEEEETTTTEEEEEEC-S-------------S-ECE-CEECCCT-
T ss_pred CCCCCcceeeecccccceEE-ECC-EEEEEcCCCeEEEEECCCCCEEEEec-C-------------CCccC-CceeeCC-
Confidence 111 1122222 334 77777777754444999998663222 1 22222 1345566
Q ss_pred EEEEEecCCceEEEEEeccCCc
Q 016457 284 LWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 284 ~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
.|+.++.++.|..||+.+++.
T Consensus 214 -~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 214 -TLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp -EEEEEETTTEEEEEETTTTEE
T ss_pred -EEEEEeCCCEEEEEECCCCCE
Confidence 556666899999999999875
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-09 Score=91.62 Aligned_cols=300 Identities=13% Similarity=0.189 Sum_probs=200.6
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCC--c-eeeeeecCCCCcEEEEEEeCCCCCCEEEEEec-CCeEEEEEccC
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT--G-QYSGECKGHSSTVNQISFSGPSTPHVLHSCSS-DGTIRAWDTRS 113 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~--~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 113 (389)
.+.|+.+... -.+++.+++.||.++.|--.. | +.+..+..|...|.+++.+-++ .++.|++. |..++++|+.+
T Consensus 9 rd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg--~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 9 RDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG--WLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc--eeEeeccCcccceeEEEeec
Confidence 4555555444 346999999999999997543 2 5566778899999999999898 68888777 99999999987
Q ss_pred CeEEEEEEcC--CCCeEEEEEeCCC-CeEEEeec--CCeEEEEECcCCc-eeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457 114 FHEVWSVTAG--SQEIFCFSFGGST-DYLLAAGC--GSQIQFWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKVVSAS 187 (389)
Q Consensus 114 ~~~~~~~~~~--~~~v~~~~~~~~~-~~l~~~~~--d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 187 (389)
-..+.-++.. .+.+..+ .+|.+ -.+++.+. ++.+.++|-.... +..-+..-|..+|.++.++|.+. .+++..
T Consensus 86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVSID 163 (558)
T ss_pred cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceeecc
Confidence 6655433332 2222222 22111 12333333 7999999987543 44444457999999999999996 899998
Q ss_pred CCCcEEEEecCCCC-----------CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecc
Q 016457 188 VDGLICTFDTGGDI-----------NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENA 256 (389)
Q Consensus 188 ~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 256 (389)
..|.|..|...... +....+..+........++.|+ +++..+.+-+.|..|++++.++++.++.+...
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-p~g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-PDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEc-cccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 89999999987311 0112222333445677899999 78888999999999999999999887666532
Q ss_pred cccc----cCCccC-----------------CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEE
Q 016457 257 RSLA----SDSWTL-----------------DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVL 315 (389)
Q Consensus 257 ~~~~----~~~~~~-----------------~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~ 315 (389)
.... ...... .....-+.+.|...++ ||+-|+.=| |+++++.++.. ..+
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~--flly~t~~g-ikvin~~tn~v-------~ri 312 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN--FLLYGTILG-IKVINLDTNTV-------VRI 312 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC--EEEeeccee-EEEEEeecCeE-------EEE
Confidence 2111 001000 0123345677888888 888887766 99999998875 222
Q ss_pred ecccceeee------------------ec-cCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457 316 VGGHTAVVR------------------SV-LPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356 (389)
Q Consensus 316 ~~~h~~~v~------------------~~-~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW 356 (389)
. |....|+ .+ +...+.+ .+.+|-..++++-.-..++++
T Consensus 313 ~-gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~--~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 313 L-GKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLL--EFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred e-ccchhhhhhhHHHHhhhhhccchhhhhhhccCccc--ccCCCCeEEEeeeecceEEEE
Confidence 2 2221111 22 2333334 577787888888888888888
No 294
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.17 E-value=1.6e-09 Score=98.36 Aligned_cols=186 Identities=16% Similarity=0.173 Sum_probs=147.2
Q ss_pred CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEE
Q 016457 50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFC 129 (389)
Q Consensus 50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 129 (389)
+..++.|+-...+..+|+.+.+..+........|.-++.+ + .++.+|...|+|.+-|.++.+.++++..|.+.|..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n--r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N--RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C--cEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 3456666666778888998888777766555567666653 4 58999999999999999999999999999999998
Q ss_pred EEEeCCCCeEEEeec---------CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCC
Q 016457 130 FSFGGSTDYLLAAGC---------GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGD 200 (389)
Q Consensus 130 ~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 200 (389)
+.. .|+.|+++|. |.-|++||+|..+.+.-+. -+.+ ..-+.|+|.-...+++++..|...+.|..+-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc-cccC-chhhhhcccccceEEEEecccceeecccccc
Confidence 887 6889999885 5679999999887776665 3333 3668899987778999999999999995543
Q ss_pred CCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457 201 INDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW 244 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 244 (389)
.+....+.......+.+..+.++ ++++.++.+..+|.|.+|--
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiS-sn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDIS-SNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCCccceeEEccCCCcceeEEec-CCCceEEEecccCcEeeecC
Confidence 33333444455556679999999 88999999999999999973
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.16 E-value=2.2e-07 Score=73.97 Aligned_cols=230 Identities=11% Similarity=0.127 Sum_probs=136.5
Q ss_pred EEeecCCCCeEEEEecCCeEEEEeCCCc--eeeeeecC---CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 43 EIVPKNDWSLMAVSLSTNVVKLYSPVTG--QYSGECKG---HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 43 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~---~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
.++.+++|++||+-. |..|.|-..++. ..+.+.+. ..-.=..++|+|++ .+||.+...|+|+++|+.. ..+
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~--tlLa~a~S~G~i~vfdl~g-~~l 77 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC--TLLAYAESTGTIRVFDLMG-SEL 77 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC--cEEEEEcCCCeEEEEeccc-cee
Confidence 356788998888776 788888776542 22233222 22345789999999 7999999999999999874 444
Q ss_pred EEEEcC-------CCCeEEEEEeCCC------CeEEEeecCCeEEEEECcCC-----ceeee--eeecccCCeeEEEEec
Q 016457 118 WSVTAG-------SQEIFCFSFGGST------DYLLAAGCGSQIQFWDWRNK-----KQVAC--LEESHVEDVTQVHFVP 177 (389)
Q Consensus 118 ~~~~~~-------~~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~~-----~~~~~--~~~~~~~~v~~~~~~~ 177 (389)
..+... ...|..+.|.+.. ..|++...+|.++-|-+..+ +...+ +...+...|.++.++|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 444322 3567777776432 35777778888887775322 22223 2223466899999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE-EEEecCC------cEEEEEcCCCcee
Q 016457 178 NNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL-WCLTHIE------TLSIWDWKDGQNV 250 (389)
Q Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~------~i~i~d~~~~~~~ 250 (389)
..+ +|++|+.... ..+ . .......+++-........+. +....|+ +..+|.+-+.+..
T Consensus 158 ~h~-LLlVgG~~~~------~~~------~--s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~f 222 (282)
T PF15492_consen 158 KHR-LLLVGGCEQN------QDG------M--SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFF 222 (282)
T ss_pred CCC-EEEEeccCCC------CCc------c--ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeee
Confidence 985 7776664322 000 0 001111222222210111111 1111111 1223333322221
Q ss_pred EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 251 ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
..... ..+.|..+..||||+ .|++...+|.|.+|++.+-++
T Consensus 223 s~~~~------------~~d~i~kmSlSPdg~--~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 223 SRQGQ------------EQDGIFKMSLSPDGS--LLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ecccc------------CCCceEEEEECCCCC--EEEEEEcCCeEEEEecCcchh
Confidence 11111 347899999999999 889999999999999988665
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.15 E-value=3.4e-07 Score=88.52 Aligned_cols=254 Identities=15% Similarity=0.177 Sum_probs=156.1
Q ss_pred ceEEEeecCCCCeEEEEec---C---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec---CCeEEEEE
Q 016457 40 YVFEIVPKNDWSLMAVSLS---T---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS---DGTIRAWD 110 (389)
Q Consensus 40 ~v~~~~~~~~~~~l~~~~~---d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~iwd 110 (389)
.-..++|-.||.++|+.+- . ..++||+-+ |++...-..-.+--.+++|.|.| ++||+... ...|.+|.
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe
Confidence 4457889999999998875 2 589999955 66554443333344678999999 68888764 34577776
Q ss_pred ccCCeEEEEEEc----CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce--eeeeeecccCCeeEEEEecCCCCeEE
Q 016457 111 TRSFHEVWSVTA----GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ--VACLEESHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 111 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~ 184 (389)
++|-.-..|.. ....|..+.|++++..|++... ..|.+|-..+..- .+.+.......+..+.|+|..+..|.
T Consensus 288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~-~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE-DRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec-CCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 34444333333 3578999999987777777554 4499999877642 33333123344566999999887888
Q ss_pred EEeCCCcEEEEecC----CCCC--------------------------CCccc-eeeeccCCceeeEEEecCCCcEEEEE
Q 016457 185 SASVDGLICTFDTG----GDIN--------------------------DDDLL-ESVINVGTSVGKVGFFGETNKHLWCL 233 (389)
Q Consensus 185 ~~~~d~~i~i~d~~----~~~~--------------------------~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~ 233 (389)
..+.+|.+..+++. .+.. .+.++ ......+.+|..++|+ +++..+++.
T Consensus 366 v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~-~~~~~~avl 444 (928)
T PF04762_consen 366 VLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFS-PSNSRFAVL 444 (928)
T ss_pred EEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEe-CCCCeEEEE
Confidence 88887877666553 1100 00000 1112235789999999 555569999
Q ss_pred ecCCcEEEEEcCCCcee--------EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC---CceEEEEEecc
Q 016457 234 THIETLSIWDWKDGQNV--------ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG---AGTVGYFPVNY 302 (389)
Q Consensus 234 ~~d~~i~i~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~---dg~i~i~~~~~ 302 (389)
..||.|.+|........ ..+......... .......+..++|..+.. +++.... ...+.++++..
T Consensus 445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISD--SELPLGSLRQLAWLNDDT--LLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred ECCCCEEEEEecCCCcccccCcchhhhcccccccccc--cccccccEEEEEEeCCCE--EEEEEecCcccceEEEEEecc
Confidence 99999999985443211 111110000000 000235567788877665 3333333 46788888744
Q ss_pred C
Q 016457 303 G 303 (389)
Q Consensus 303 ~ 303 (389)
.
T Consensus 521 ~ 521 (928)
T PF04762_consen 521 S 521 (928)
T ss_pred C
Confidence 3
No 297
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=9.7e-09 Score=91.87 Aligned_cols=324 Identities=12% Similarity=0.002 Sum_probs=196.6
Q ss_pred CCCCccccCCCCeEEEEecCc--eeeeeec-CcceEEEeecC---CC-CeEEEEecCCeEEEEeCCCceeeeeecCCCCc
Q 016457 10 SQPKSQSCDNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKN---DW-SLMAVSLSTNVVKLYSPVTGQYSGECKGHSST 82 (389)
Q Consensus 10 ~~~~~~s~~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~---~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 82 (389)
..+..|++.-.|.|.+||... .+..+.+ .++|..++|-+ +. ..|++-....+|.+|+..+|+....+......
T Consensus 78 ~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i 157 (1062)
T KOG1912|consen 78 SQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI 157 (1062)
T ss_pred cceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc
Confidence 456678888889999999753 3444555 78888999865 23 45666566789999999999998888766677
Q ss_pred EEEEEEeCCCCCCEEEEEecCCeEEEEEcc--------------------------------------------------
Q 016457 83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTR-------------------------------------------------- 112 (389)
Q Consensus 83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~-------------------------------------------------- 112 (389)
..|+.+.|-.. ..+..-+..|.+-+-+.-
T Consensus 158 Ls~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 158 LSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred eeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 77788877654 333333334444433321
Q ss_pred ------------------------CCeEEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCC----------
Q 016457 113 ------------------------SFHEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNK---------- 156 (389)
Q Consensus 113 ------------------------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~---------- 156 (389)
-..++..+....+.+.-+.+-|+ ...+++.-.||.+.+|-.+..
T Consensus 237 af~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~ 316 (1062)
T KOG1912|consen 237 AFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNAS 316 (1062)
T ss_pred hcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchh
Confidence 11122222222222333444443 445777777898888875541
Q ss_pred ------ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCc------------------------c
Q 016457 157 ------KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDD------------------------L 206 (389)
Q Consensus 157 ------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------------------------~ 206 (389)
+++..+....+..+......|..++.++.--.+|.+.+|.++++..... .
T Consensus 317 l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~ 396 (1062)
T KOG1912|consen 317 LSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTS 396 (1062)
T ss_pred hccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhcc
Confidence 1111111111222333444455444555556678888898885431100 0
Q ss_pred c---eeeeccCCceeeEEE----------ecCCC-------cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccC
Q 016457 207 L---ESVINVGTSVGKVGF----------FGETN-------KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTL 266 (389)
Q Consensus 207 ~---~~~~~~~~~i~~~~~----------~~~~~-------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 266 (389)
+ .....|......... .++.+ .+++.|+..|+|.++|+.++...+.+..
T Consensus 397 l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsv----------- 465 (1062)
T KOG1912|consen 397 LISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSV----------- 465 (1062)
T ss_pred ccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcc-----------
Confidence 0 000112222222211 11222 2678999999999999999988777776
Q ss_pred CCCCceeeecccCCCCeEEEE---------EecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCC
Q 016457 267 DDVDYFVDCHYPGEGENLWVI---------GGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPA 337 (389)
Q Consensus 267 ~~~~~i~~~~~~~~~~~~~l~---------~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 337 (389)
|...|.++.|-.... ++- +|+.-+.+.+-|+.+|.... ...+....+.+|+.+ ..
T Consensus 466 -ht~~VkgleW~g~ss--lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~----fR~l~~~despI~~i---------rv 529 (1062)
T KOG1912|consen 466 -HTSLVKGLEWLGNSS--LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR----FRGLQKPDESPIRAI---------RV 529 (1062)
T ss_pred -cccceeeeeecccee--EEEeeeccccccccceeeeEEEEEcccccccc----cccCCCCCcCcceee---------ee
Confidence 667788888876544 221 22223467788898886521 233333445788888 89
Q ss_pred CCCceeEEEecCCCeEEEEeccCC
Q 016457 338 QSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 338 s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
|.-|+||+..-.|.-+.+|++...
T Consensus 530 S~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 530 SSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred cccCceEEEEecccchHHHhhccc
Confidence 999999999999999999999543
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.14 E-value=1e-09 Score=85.39 Aligned_cols=148 Identities=15% Similarity=0.237 Sum_probs=98.2
Q ss_pred CCCeEEEEecCCeEEEEeCCCce-eeeeecC-CCCcEEEEEEeCCCCCCEEEEEe-----cCCeEEEEEccCCeEEEEEE
Q 016457 49 DWSLMAVSLSTNVVKLYSPVTGQ-YSGECKG-HSSTVNQISFSGPSTPHVLHSCS-----SDGTIRAWDTRSFHEVWSVT 121 (389)
Q Consensus 49 ~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~ 121 (389)
.++.++++..||.+.+++.+.-. ....+.. |.+ -.+.++...+ +.+.++. .-+..++|+++..+.+..-.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~--~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHG--NSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecc--cEEecCCcceEeeccceeeecccccccccccc
Confidence 35679999999999999976411 1111111 111 1222333333 3444432 12335566665333222212
Q ss_pred cCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457 122 AGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG 199 (389)
Q Consensus 122 ~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (389)
.....|++++-+|..+.++++|. ||.+-+||.++......+...|+.++..+-|+|..+..|+++++||.+-.||..+
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 22345999999998877776665 8999999999886555444489999999999999888999999999999999984
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.12 E-value=2e-07 Score=76.93 Aligned_cols=216 Identities=13% Similarity=0.048 Sum_probs=133.2
Q ss_pred CCeEEEEecCc--eeeeeec---CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457 20 VNSIKRFGLKN--SIQTNFG---DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP 94 (389)
Q Consensus 20 ~~~i~~w~~~~--~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 94 (389)
+++|..||..+ .+-...- .....+. ..+++..+++++.++.|..||..+|+.+..+.. ...+.......++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~-- 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG-- 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT--
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc--
Confidence 57888888742 2222221 1222211 333556788888899999999999999887764 2222221222233
Q ss_pred CEEEEEecCCeEEEEEccCCeEEEEE-EcCC---CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCC-
Q 016457 95 HVLHSCSSDGTIRAWDTRSFHEVWSV-TAGS---QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED- 169 (389)
Q Consensus 95 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~- 169 (389)
.++.+..++.|..+|..+|+.+... .... ...........++.++++..++.|..+|+++|+.+.... .....
T Consensus 78 -~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~-~~~~~~ 155 (238)
T PF13360_consen 78 -RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP-VGEPRG 155 (238)
T ss_dssp -EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE-SSTT-S
T ss_pred -ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee-cCCCCC
Confidence 6777778889999999999999984 4321 112222222247888888889999999999999988776 32211
Q ss_pred ---------eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEE
Q 016457 170 ---------VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLS 240 (389)
Q Consensus 170 ---------v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~ 240 (389)
+..-....++ .++.++.++.+..+|+.++. .+- ......+..+ .. ..+..|++++.++.|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d~~tg~----~~w--~~~~~~~~~~-~~-~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVDLATGE----KLW--SKPISGIYSL-PS-VDGGTLYVTSSDGRLY 225 (238)
T ss_dssp S--EEEETTEEEEEECCTT--EEEEECCTSSEEEEETTTTE----EEE--EECSS-ECEC-EE-CCCTEEEEEETTTEEE
T ss_pred CcceeeecccccceEEECC--EEEEEcCCCeEEEEECCCCC----EEE--EecCCCccCC-ce-eeCCEEEEEeCCCEEE
Confidence 1122222233 66667777754444998663 121 1112223332 22 4556777777999999
Q ss_pred EEEcCCCceeE
Q 016457 241 IWDWKDGQNVA 251 (389)
Q Consensus 241 i~d~~~~~~~~ 251 (389)
.||+++++.+-
T Consensus 226 ~~d~~tG~~~W 236 (238)
T PF13360_consen 226 ALDLKTGKVVW 236 (238)
T ss_dssp EEETTTTEEEE
T ss_pred EEECCCCCEEe
Confidence 99999998764
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=3.6e-10 Score=91.34 Aligned_cols=144 Identities=11% Similarity=0.126 Sum_probs=112.9
Q ss_pred cCCCCeEEEEecCceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc-----eeeeeecCCCCcEEEEEEeC
Q 016457 17 CDNVNSIKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-----QYSGECKGHSSTVNQISFSG 90 (389)
Q Consensus 17 ~~~~~~i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~v~~i~~~~ 90 (389)
.+.+..|-+-++.+-...... .+.|+++.|...++++..|+.+|.|..+|+..+ .+.+.+. |...|+++....
T Consensus 230 ~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq 308 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQ 308 (425)
T ss_pred ccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhc
Confidence 334455666666554544445 888999999998999999999999999999754 3444444 899999998876
Q ss_pred -CCCCCEEEEEecCCeEEEEEccCCeE---EEEEEcCCC--CeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee
Q 016457 91 -PSTPHVLHSCSSDGTIRAWDTRSFHE---VWSVTAGSQ--EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE 163 (389)
Q Consensus 91 -~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 163 (389)
++ ++|++.+.+|+|++||.+--++ +.++.+|.. .-.-+-.++..+.++++|.|...+||.++.+..+.++.
T Consensus 309 ~s~--q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 309 FSQ--QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ccc--ceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 44 7899999999999999986665 888888833 23334456678889999999999999999999988876
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.09 E-value=2.3e-07 Score=82.43 Aligned_cols=265 Identities=12% Similarity=0.020 Sum_probs=158.0
Q ss_pred CCCeEEEEecCCeEEEEeCCCceeeeeecCCCC----------cE-EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS----------TV-NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~----------~v-~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
.+..+++++.++.+.-+|.++|+.+....-... .+ ..+.. .+ ..++.++.+|.+..+|..+|+.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~--~~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AG--GKVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--EC--CEEEEEcCCCEEEEEECCCCCCc
Confidence 355788888889999999999998877643210 00 01122 22 36778888999999999999999
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCe-----eEEEEecCCCCeEEEEeCCCcE
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV-----TQVHFVPNNQNKVVSASVDGLI 192 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~d~~i 192 (389)
.+.+.......+... .++.++++..++.|..+|.++++.+.++. .....+ .+-... ++ .++.++.+|.+
T Consensus 144 W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~-~~~~~~~~~~~~sP~v~-~~--~v~~~~~~g~v 217 (394)
T PRK11138 144 WQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVN-LDVPSLTLRGESAPATA-FG--GAIVGGDNGRV 217 (394)
T ss_pred ccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec-CCCCcccccCCCCCEEE-CC--EEEEEcCCCEE
Confidence 887764322222222 35678888889999999999999988776 211100 111111 22 56777789999
Q ss_pred EEEecCCCCCCCccceeeeccCCc------e-eeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCcc
Q 016457 193 CTFDTGGDINDDDLLESVINVGTS------V-GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWT 265 (389)
Q Consensus 193 ~i~d~~~~~~~~~~~~~~~~~~~~------i-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 265 (389)
..+|..++................ + ..-... +..+++++.++.+..+|..+++.+-....
T Consensus 218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~---~~~vy~~~~~g~l~ald~~tG~~~W~~~~---------- 284 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV---GGVVYALAYNGNLVALDLRSGQIVWKREY---------- 284 (394)
T ss_pred EEEEccCChhhheeccccCCCccchhcccccCCCcEEE---CCEEEEEEcCCeEEEEECCCCCEEEeecC----------
Confidence 999988764221110000000000 0 111121 33677778899999999999987654432
Q ss_pred CCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEec-ccceeeeeccCCCcccCCCCCCCceeE
Q 016457 266 LDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVG-GHTAVVRSVLPMPSVQGRPAQSHGIFG 344 (389)
Q Consensus 266 ~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~s~~~~~l 344 (389)
.....+. ..++ .|+.++.+|.++.+|..+++. +..... .+. ...+. .. .+.+|
T Consensus 285 ----~~~~~~~--~~~~--~vy~~~~~g~l~ald~~tG~~------~W~~~~~~~~-~~~sp---------~v--~~g~l 338 (394)
T PRK11138 285 ----GSVNDFA--VDGG--RIYLVDQNDRVYALDTRGGVE------LWSQSDLLHR-LLTAP---------VL--YNGYL 338 (394)
T ss_pred ----CCccCcE--EECC--EEEEEcCCCeEEEEECCCCcE------EEcccccCCC-cccCC---------EE--ECCEE
Confidence 1111111 2345 456677899999999988765 211110 010 00110 11 13445
Q ss_pred EEecCCCeEEEEeccCCc
Q 016457 345 WTGGEDGRLCCWLSDDSS 362 (389)
Q Consensus 345 ~s~~~dg~v~iW~~~~~~ 362 (389)
+.++.||.|.+.+..++.
T Consensus 339 ~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 339 VVGDSEGYLHWINREDGR 356 (394)
T ss_pred EEEeCCCEEEEEECCCCC
Confidence 778889999988887663
No 302
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=5.5e-11 Score=107.35 Aligned_cols=216 Identities=16% Similarity=0.184 Sum_probs=152.6
Q ss_pred eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-eEEE
Q 016457 31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG-TIRA 108 (389)
Q Consensus 31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-~i~i 108 (389)
.++++.. ....+|++|+-+.+.|++|+..|.|++|++.+|.......+|..+|+-+.=+.+++ ..|.+++... -..+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs-~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGS-TQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcc-eeeeeccccCchHHH
Confidence 4555665 78899999999999999999999999999999999999999999999999888885 3444444444 5679
Q ss_pred EEccC-CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee---cccCCeeEEEEecCCCCeEE
Q 016457 109 WDTRS-FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE---SHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 109 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~ 184 (389)
|++.+ +...++|.. -.++.|+.....-+.++......+||+.++.++.++.. +....-++..|+|... +++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL 1246 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe
Confidence 99864 445555543 45678874444444555557889999999988777431 1222347789999985 554
Q ss_pred EEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457 185 SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW 264 (389)
Q Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 264 (389)
.|| .+||.+.. ..+..+...... ..-.|+ |++.-++..+. |||+++.+.++.....
T Consensus 1247 ---ndG--vLWDvR~~----~aIh~FD~ft~~-~~G~FH-P~g~eVIINSE-----IwD~RTF~lLh~VP~L-------- 1302 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIP----EAIHRFDQFTDY-GGGGFH-PSGNEVIINSE-----IWDMRTFKLLHSVPSL-------- 1302 (1516)
T ss_pred ---eCc--eeeeeccH----HHHhhhhhheec-cccccc-CCCceEEeech-----hhhhHHHHHHhcCccc--------
Confidence 355 57999943 334443333211 223477 67777777665 9999999988877652
Q ss_pred cCCCCCceeeecccCCCC
Q 016457 265 TLDDVDYFVDCHYPGEGE 282 (389)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~ 282 (389)
.-..+.|+..|+
T Consensus 1303 ------dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1303 ------DQCAVTFNSTGD 1314 (1516)
T ss_pred ------cceEEEeccCcc
Confidence 235667777776
No 303
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=7.3e-07 Score=79.11 Aligned_cols=211 Identities=10% Similarity=-0.022 Sum_probs=127.1
Q ss_pred CeEEEEecCc-eeeeeecCcceEEEeecCCCCe-EEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCC
Q 016457 21 NSIKRFGLKN-SIQTNFGDDYVFEIVPKNDWSL-MAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPH 95 (389)
Q Consensus 21 ~~i~~w~~~~-~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 95 (389)
..|.+=|... ..+.+...+.+....|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|+|++. .
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~-~ 246 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS-K 246 (419)
T ss_pred ceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC-E
Confidence 3455544432 2222323336778999999984 6654433 579999998886554433 445566788999994 3
Q ss_pred EEEEEecC--CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C--CeEEEEECcCCceeeeeeecccCCe
Q 016457 96 VLHSCSSD--GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G--SQIQFWDWRNKKQVACLEESHVEDV 170 (389)
Q Consensus 96 ~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v 170 (389)
++++.+.+ ..|.++|+.+++.. .+..+........|+|+++.++..+. . ..|.+.|+.+++..+... ....
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--~g~~- 322 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--HGKN- 322 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--CCCc-
Confidence 44455444 45777788777643 34433333445689999998888775 2 368888988776543332 1111
Q ss_pred eEEEEecCCCCeEEEEeCC---------CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC---c
Q 016457 171 TQVHFVPNNQNKVVSASVD---------GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE---T 238 (389)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~ 238 (389)
...|+|+|+ .++..+.. ..|.+.|+.++. ...+... .......|+ |+++.++..+.++ .
T Consensus 323 -~~~~SPDG~-~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-----~~~LT~~-~~~~~p~~S-PDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 323 -NSSVSTYKN-YIVYSSRETNNEFGKNTFNLYLISTNSDY-----IRRLTAN-GVNQFPRFS-SDGGSIMFIKYLGNQSA 393 (419)
T ss_pred -CceECCCCC-EEEEEEcCCCcccCCCCcEEEEEECCCCC-----eEECCCC-CCcCCeEEC-CCCCEEEEEEccCCcEE
Confidence 248999997 55555433 368888887653 2222222 223357898 6777665555432 4
Q ss_pred EEEEEcCC
Q 016457 239 LSIWDWKD 246 (389)
Q Consensus 239 i~i~d~~~ 246 (389)
|.+.++..
T Consensus 394 L~~~~l~g 401 (419)
T PRK04043 394 LGIIRLNY 401 (419)
T ss_pred EEEEecCC
Confidence 66666643
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.07 E-value=1.2e-07 Score=75.40 Aligned_cols=199 Identities=14% Similarity=0.146 Sum_probs=119.8
Q ss_pred ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-------CCCcEEEEEEeCCCC----CCEEEEEecCCeEEE
Q 016457 40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-------HSSTVNQISFSGPST----PHVLHSCSSDGTIRA 108 (389)
Q Consensus 40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~----~~~l~s~~~dg~i~i 108 (389)
.=+.++|+||+.+||.+...|+|++||+.. ..+..+.. -...|..+.|.+... ...|+.-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 346799999999999999999999999874 33333322 235677777765431 125666677888887
Q ss_pred EEccC-----CeEEEEEEc---CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCC
Q 016457 109 WDTRS-----FHEVWSVTA---GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ 180 (389)
Q Consensus 109 wd~~~-----~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 180 (389)
|-+.. .+..++|.. +...|.++.++|..+.|+++|.... +.+. . . +....+++-....+.+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--s--~-a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--S--K-ASSCGLTAWRILSDSP 192 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--c--c-ccccCceEEEEcCCCC
Confidence 77532 234444443 3679999999998888888886221 0000 0 0 1112222222222222
Q ss_pred CeEE-EEeCCCc------EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEe
Q 016457 181 NKVV-SASVDGL------ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF 253 (389)
Q Consensus 181 ~~l~-~~~~d~~------i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 253 (389)
.+.. +...|+. ..+|.+-+. ............|..|..+ |++..|++...+|.|.+|++.+.++...+
T Consensus 193 yyk~v~~~~~~~~~~~~~~~~~~~~~~----~~fs~~~~~~d~i~kmSlS-Pdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 193 YYKQVTSSEDDITASSKRRGLLRIPSF----KFFSRQGQEQDGIFKMSLS-PDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred cEEEccccCccccccccccceeeccce----eeeeccccCCCceEEEEEC-CCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 1111 1111111 112222110 0111112346789999999 88999999999999999999988777766
Q ss_pred ec
Q 016457 254 EN 255 (389)
Q Consensus 254 ~~ 255 (389)
..
T Consensus 268 ~~ 269 (282)
T PF15492_consen 268 KQ 269 (282)
T ss_pred ch
Confidence 54
No 305
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.1e-08 Score=82.98 Aligned_cols=267 Identities=14% Similarity=0.078 Sum_probs=156.3
Q ss_pred EEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEE
Q 016457 62 VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLA 141 (389)
Q Consensus 62 i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 141 (389)
++..+..+.+....+.+|...|.+++|+|... -++..++.+..|+|.|+++...+..+..+ ..+++++|.-++...+-
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~-GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNE-GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCcccc-ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 56666655566666778889999999999884 38899999999999999999999999887 89999999877777666
Q ss_pred eec-CCeEEEEECcCCce-eeeeee-cccCCeeEEEE------ecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec
Q 016457 142 AGC-GSQIQFWDWRNKKQ-VACLEE-SHVEDVTQVHF------VPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN 212 (389)
Q Consensus 142 ~~~-d~~i~iwd~~~~~~-~~~~~~-~~~~~v~~~~~------~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 212 (389)
+|. .|.|.+||++..+- +..+.. -...+|..++. .+.+. +++....+ +..|.+........++. ...
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~s~~~~p~vl-ele 328 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVFSAECLPCVL-ELE 328 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhhccccCCCccc-ccC
Confidence 665 89999999997543 222220 11233444332 23333 44444333 55666653321122222 223
Q ss_pred cCCceeeEEEecCCCcEEEEEecCC---cEE---E-EEcCCCceeEEee----cccccccCCccCCCCCceeeecc-cCC
Q 016457 213 VGTSVGKVGFFGETNKHLWCLTHIE---TLS---I-WDWKDGQNVASFE----NARSLASDSWTLDDVDYFVDCHY-PGE 280 (389)
Q Consensus 213 ~~~~i~~~~~~~~~~~~l~~~~~d~---~i~---i-~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~-~~~ 280 (389)
..+...++++.+.....|++.-.+. +++ . -|-.+|..+..-. +...- .-+.. ...+ .++
T Consensus 329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~------kl~t~---~ai~~~~~ 399 (463)
T KOG1645|consen 329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQT------KLSTT---QAIRAVED 399 (463)
T ss_pred CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccc------ccccc---cceecccc
Confidence 3456667777644444455444321 011 1 1112222221111 11000 00111 1112 233
Q ss_pred CCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457 281 GENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD 360 (389)
Q Consensus 281 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~ 360 (389)
. ..++..|.....+.+||..+.+. ++.+. -..+|.+++|.. -..+.||+.-. |..++||+.+.
T Consensus 400 n-n~iv~~gd~tn~lil~D~~s~ev------vQ~l~--~~epv~Dicp~~-------~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 400 N-NYIVVVGDSTNELILQDPHSFEV------VQTLA--LSEPVLDICPND-------TNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred c-cEEEEecCCcceeEEeccchhhe------eeecc--cCcceeecceee-------cCCcchhhhee-cceEEEEecCC
Confidence 3 33556777778999999999876 56664 347888885321 11234566665 66899988653
No 306
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.05 E-value=2.1e-07 Score=79.00 Aligned_cols=142 Identities=10% Similarity=-0.001 Sum_probs=110.1
Q ss_pred CcceEEEeecCCCCeEEEEecCC-eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTN-VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 116 (389)
...|.-..+..++.-++.|..|| .+-|+|..+++. +.+...-+.|.++..+++| ++++.+.....|-+.|+.++..
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dG--K~~vvaNdr~el~vididngnv 435 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDG--KKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCC--cEEEEEcCceEEEEEEecCCCe
Confidence 66688888888888999999999 999999987764 4455567889999999999 7899988888899999999987
Q ss_pred EEEEEcCCCCeEEEEEeCCCCeEEEeecC----CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCG----SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS 185 (389)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 185 (389)
...-+...+-|+.++|+|++..++-+--+ ..|+++|+..++....-. ....=.+-+|.|+++ .|.-
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~r-yLYf 505 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGR-YLYF 505 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCc-EEEE
Confidence 66656667889999999888777765444 579999998876654333 233334567888886 4433
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.02 E-value=1.2e-06 Score=72.03 Aligned_cols=232 Identities=11% Similarity=0.128 Sum_probs=152.3
Q ss_pred cceEEEeecC-CCCeEEEEecCC-eEEEEeCCCceeeeeecCCCCcE--EEEEEeCCCCCCEEEEEe-----cCCeEEEE
Q 016457 39 DYVFEIVPKN-DWSLMAVSLSTN-VVKLYSPVTGQYSGECKGHSSTV--NQISFSGPSTPHVLHSCS-----SDGTIRAW 109 (389)
Q Consensus 39 ~~v~~~~~~~-~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~l~s~~-----~dg~i~iw 109 (389)
.....++.+| ....++.+-.-| ...+||..+++....+....+.- ---+|++++ ++|++.- ..|.|-||
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG--~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG--RLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC--CEEEEeccccCCCcEEEEEE
Confidence 3456788899 455666665544 68889999998877664432221 135799999 6777754 35789999
Q ss_pred Ecc-CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec------------------CCeEEEEECcCCceeeeee---eccc
Q 016457 110 DTR-SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC------------------GSQIQFWDWRNKKQVACLE---ESHV 167 (389)
Q Consensus 110 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~~~---~~~~ 167 (389)
|.. +.+.+..+..+.-.-..+.+.|++..|+++-. +..+.+.|.++++.+.+.. .-|.
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 999 67888888888767778889999978777632 2356677888888877643 1377
Q ss_pred CCeeEEEEecCCCCeEEEEeCCCc-------EEEEecCCCCCC-CccceeeeccCCceeeEEEecCCCcEE-EEEecCCc
Q 016457 168 EDVTQVHFVPNNQNKVVSASVDGL-------ICTFDTGGDIND-DDLLESVINVGTSVGKVGFFGETNKHL-WCLTHIET 238 (389)
Q Consensus 168 ~~v~~~~~~~~~~~~l~~~~~d~~-------i~i~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~ 238 (389)
..|..|++.++|. .++..-..|. |-+++....... .............+-+|+++ .++..+ +++=..+.
T Consensus 163 lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAAD-RDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEe-CCCCEEEEECCCCCE
Confidence 7899999999984 4444433322 334433311000 00011122345788999999 666555 45555679
Q ss_pred EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457 239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG 291 (389)
Q Consensus 239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~ 291 (389)
+.+||..+++.+....- ..+..++-.+++ |+++.+.
T Consensus 241 ~~~~d~~tg~~~~~~~l--------------~D~cGva~~~~~---f~~ssG~ 276 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPL--------------PDACGVAPTDDG---FLVSSGQ 276 (305)
T ss_pred EEEEECCCCCEeecccc--------------CceeeeeecCCc---eEEeCCC
Confidence 99999999988876654 335566655544 5665544
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=2.4e-10 Score=103.36 Aligned_cols=201 Identities=13% Similarity=0.119 Sum_probs=143.5
Q ss_pred eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeE
Q 016457 71 QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQI 148 (389)
Q Consensus 71 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i 148 (389)
+....+..|+...+|++|+... +.|+.|+..|.|+++++.+|......++|.++|+.+.-+.++..+++.+. ....
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~--~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGT--NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccchhhhccccceeeEEeecCC--ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 3445667788999999999887 79999999999999999999999999999999999999988888888766 3367
Q ss_pred EEEECcC-CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCC
Q 016457 149 QFWDWRN-KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETN 227 (389)
Q Consensus 149 ~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 227 (389)
.+|++.+ +.+..++. .-.++.|+..-. .-+.|+......+||+.++......+.........-+...|+ |..
T Consensus 1170 aLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs-P~D 1242 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD-----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS-PCD 1242 (1516)
T ss_pred HHhccccccCcccccc-----ccceeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC-CCc
Confidence 8999874 44555554 235778877653 444555556789999997753333333333333334667788 444
Q ss_pred cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 228 KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 228 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
.+++ .|| .+||.+..+.++.|.... .-..-.|+|.|.++ +.-+ -|||+.+.++
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aIh~FD~ft-------------~~~~G~FHP~g~eV--IINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRFDQFT-------------DYGGGGFHPSGNEV--IINS-----EIWDMRTFKL 1295 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHHhhhhhhe-------------ecccccccCCCceE--Eeec-----hhhhhHHHHH
Confidence 5544 344 379999888888776421 12234699999854 4443 4899988765
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.98 E-value=2.4e-08 Score=90.97 Aligned_cols=180 Identities=10% Similarity=0.111 Sum_probs=134.6
Q ss_pred CEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEE
Q 016457 95 HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVH 174 (389)
Q Consensus 95 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 174 (389)
..++.|+....+..+|+++.+..+......+.|+-+.. ++..+++|...|+|.+-|.++.+.+.++. +|.+.|..+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDfD 224 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDFD 224 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-ccccceeeee
Confidence 56777887778888999998888877766556777776 56778888889999999999999999999 9999998777
Q ss_pred EecCCCCeEEEEeC---------CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc-
Q 016457 175 FVPNNQNKVVSASV---------DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW- 244 (389)
Q Consensus 175 ~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~- 244 (389)
.. | |.|++++. |..|++||+|+-. .+..+.-+. ...-+.|.|.-...+++++..|...+-|.
T Consensus 225 v~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmr----al~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 225 VQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMR----ALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred cc--C-CeEEEeecccccccccccchhhhhhhhhhh----ccCCccccc-CchhhhhcccccceEEEEecccceeecccc
Confidence 65 4 58888875 5668999999432 122111121 22456677666678999999999999983
Q ss_pred --CCCc-eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 245 --KDGQ-NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 245 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
.+.. .+..+.. ....+..++++++++ .++.|..+|.|.+|.
T Consensus 297 ~lsNP~~~~~~v~p------------~~s~i~~fDiSsn~~--alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNP------------NGSGISAFDISSNGD--ALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCCCccceeEEcc------------CCCcceeEEecCCCc--eEEEecccCcEeeec
Confidence 3321 1222221 335699999999999 899999999999997
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.96 E-value=5.4e-06 Score=68.66 Aligned_cols=209 Identities=13% Similarity=0.064 Sum_probs=131.0
Q ss_pred EEEEeC-CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee
Q 016457 85 QISFSG-PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE 163 (389)
Q Consensus 85 ~i~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 163 (389)
+++|.+ ++ .++++--..+.|..|+..+++... +... ....+++...++.++++.. +.+.++|+.+++......
T Consensus 4 gp~~d~~~g--~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDG--RLYWVDIPGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTT--EEEEEETTTTEEEEEETTTTEEEE-EESS--SEEEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred ceEEECCCC--EEEEEEcCCCEEEEEECCCCeEEE-EecC--CCceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEee
Confidence 578887 44 567776678999999998775543 4433 2778888745577777776 445555988875544333
Q ss_pred e---c-ccCCeeEEEEecCCCCeEEEEeCC--------CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE-
Q 016457 164 E---S-HVEDVTQVHFVPNNQNKVVSASVD--------GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL- 230 (389)
Q Consensus 164 ~---~-~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l- 230 (389)
. . .....+.+++.|+|. +.++.... |.|..++.. + .+......-...+.++|+ ++++.|
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~-----~~~~~~~~~~~pNGi~~s-~dg~~ly 149 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G-----KVTVVADGLGFPNGIAFS-PDGKTLY 149 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-----EEEEEEEEESSEEEEEEE-TTSSEEE
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C-----eEEEEecCcccccceEEC-Ccchhee
Confidence 1 1 335678899999995 77765543 457777776 2 133333334567899999 566555
Q ss_pred EEEecCCcEEEEEcCCCce-e---EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcc
Q 016457 231 WCLTHIETLSIWDWKDGQN-V---ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAA 306 (389)
Q Consensus 231 ~~~~~d~~i~i~d~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~ 306 (389)
++-+..+.|..|++..... + ..+..... .....-.+++..+|+ +.++....+.|.+++.+ ++.
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~g~pDG~~vD~~G~--l~va~~~~~~I~~~~p~-G~~- 216 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPG---------GPGYPDGLAVDSDGN--LWVADWGGGRIVVFDPD-GKL- 216 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SS---------SSCEEEEEEEBTTS---EEEEEETTTEEEEEETT-SCE-
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCC---------CCcCCCcceEcCCCC--EEEEEcCCCEEEEECCC-ccE-
Confidence 5667788999999864322 1 22211110 113467899999887 55666678899999987 554
Q ss_pred ccCCCeEEEecccceeeeec
Q 016457 307 TIGPPEAVLVGGHTAVVRSV 326 (389)
Q Consensus 307 ~~~~~~~~~~~~h~~~v~~~ 326 (389)
+..+... ...++++
T Consensus 217 -----~~~i~~p-~~~~t~~ 230 (246)
T PF08450_consen 217 -----LREIELP-VPRPTNC 230 (246)
T ss_dssp -----EEEEE-S-SSSEEEE
T ss_pred -----EEEEcCC-CCCEEEE
Confidence 4555533 3466666
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.3e-07 Score=78.53 Aligned_cols=242 Identities=11% Similarity=0.034 Sum_probs=143.0
Q ss_pred CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457 38 DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116 (389)
Q Consensus 38 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 116 (389)
...|..++|+|... ++..++.+..|+|.|+++...+..+..+ ..+++++|.-+.. ++|..|...|.|.|||++..+-
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~-h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER-HVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc-ceeEEeccCceEEEEEccCCCc
Confidence 77899999999886 7888888999999999999999898887 8899999998875 7999999999999999986432
Q ss_pred -EEEEEc--CCCCeEEEEEeC------CCCeEEEeecCCeEEEEECcC--CceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457 117 -VWSVTA--GSQEIFCFSFGG------STDYLLAAGCGSQIQFWDWRN--KKQVACLEESHVEDVTQVHFVPNNQNKVVS 185 (389)
Q Consensus 117 -~~~~~~--~~~~v~~~~~~~------~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 185 (389)
+..+.. ...+|..++.-+ .++.++.+. -.+..|.+.. +.....+.....+...+++.++.....|++
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l--t~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL--TVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLT 348 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeee--hhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEE
Confidence 222222 134555544332 233333322 2344555442 122222221245566677777755434444
Q ss_pred EeCCCc------EEE-EecCCCCCCCccceee-ecc-CCc-----eeeEEEecCCCcEE-EEEecCCcEEEEEcCCCcee
Q 016457 186 ASVDGL------ICT-FDTGGDINDDDLLESV-INV-GTS-----VGKVGFFGETNKHL-WCLTHIETLSIWDWKDGQNV 250 (389)
Q Consensus 186 ~~~d~~------i~i-~d~~~~~~~~~~~~~~-~~~-~~~-----i~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~ 250 (389)
.-.+.. +-. -|.+.+ .++... ..+ ++. -....+.+++.+++ ..+...+.+.+||..+++.+
T Consensus 349 yRs~pn~p~~r~il~~~d~~dG----~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv 424 (463)
T KOG1645|consen 349 YRSNPNFPQSRFILGRIDFRDG----FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV 424 (463)
T ss_pred ecCCCCCccceeeeeeeccccC----ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence 433110 100 011111 011000 000 000 11122222444444 44455679999999999999
Q ss_pred EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457 251 ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN 301 (389)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 301 (389)
+.+.. ..++.+++...-+..-||++- .|..++||..+
T Consensus 425 Q~l~~-------------~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 425 QTLAL-------------SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred eeccc-------------CcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 88874 267777776554332266555 45668888655
No 312
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.94 E-value=5e-06 Score=70.63 Aligned_cols=284 Identities=14% Similarity=0.105 Sum_probs=136.1
Q ss_pred eecCCCCeEEEEec---CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457 45 VPKNDWSLMAVSLS---TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121 (389)
Q Consensus 45 ~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 121 (389)
+|.+||+.|+.++. ...+.+.|+.+++..+.-.+.........++|++ +.++-......|+-.|+.+.+....+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~--~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD--RALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS--SEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC--CeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 47788977766665 4478888999888776555433333356677777 566655556688889999988776666
Q ss_pred cCCCCeEEEEEe-CCCCeEEEeec----C-------------------CeEEEEECcCCceeeeeeecccCCeeEEEEec
Q 016457 122 AGSQEIFCFSFG-GSTDYLLAAGC----G-------------------SQIQFWDWRNKKQVACLEESHVEDVTQVHFVP 177 (389)
Q Consensus 122 ~~~~~v~~~~~~-~~~~~l~~~~~----d-------------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 177 (389)
....-+-...|. ..+...+++.. | ..|.-.|+++++....+. ....+..+.|+|
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~fsP 197 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQFSP 197 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EEEEEEET
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCccccCcccCC
Confidence 665555555553 23344444332 1 245666777777655554 456788899999
Q ss_pred CCCCeEEEEeC---CC-cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEE-Ee----cCCcEEEEEcCCCc
Q 016457 178 NNQNKVVSASV---DG-LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWC-LT----HIETLSIWDWKDGQ 248 (389)
Q Consensus 178 ~~~~~l~~~~~---d~-~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~----~d~~i~i~d~~~~~ 248 (389)
..+.+|+-|.+ +. .-+||-+++......++.... ....+..=-|. ++|..+.- +. .+..|.-+|+.+++
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~-~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWV-PDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE--TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCccccccccc-CCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 98866666654 22 135666654332223332221 12223333455 55554433 22 13356667777775
Q ss_pred eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC----------------ceEEEEEeccCCccccCCCe
Q 016457 249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA----------------GTVGYFPVNYGGAATIGPPE 312 (389)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d----------------g~i~i~~~~~~~~~~~~~~~ 312 (389)
....... ........+++|+ +++.=+.| -.|+++++..+..
T Consensus 276 ~~~~~~~--------------p~~~H~~ss~Dg~--L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~------- 332 (386)
T PF14583_consen 276 RRRLMEM--------------PWCSHFMSSPDGK--LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF------- 332 (386)
T ss_dssp EEEEEEE---------------SEEEEEE-TTSS--EEEEEE-------------------EEEEEETTTTEE-------
T ss_pred ceEEEeC--------------CceeeeEEcCCCC--EEEecCCCCCccccccccceecCCcEEEEeccccCce-------
Confidence 5432221 3345666778887 44432222 1456677765543
Q ss_pred EEEecccceeeeecc----CCCcccCCCCCCCcee-EEEecCCCeEEEEeccC
Q 016457 313 AVLVGGHTAVVRSVL----PMPSVQGRPAQSHGIF-GWTGGEDGRLCCWLSDD 360 (389)
Q Consensus 313 ~~~~~~h~~~v~~~~----~~~~~~~~~~s~~~~~-l~s~~~dg~v~iW~~~~ 360 (389)
..+. .|.....-+- ...+.. .|||||++ |+++...|...||-++-
T Consensus 333 ~~l~-~h~~sw~v~~~~~q~~hPhp--~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 333 RKLA-RHDTSWKVLDGDRQVTHPHP--SFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp EEEE-E-------BTTBSSTT------EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred eeee-eccCcceeecCCCccCCCCC--ccCCCCCEEEEECCCCCCccEEEEeC
Confidence 3332 3432111110 122233 89999987 45667888888887653
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.91 E-value=7.2e-09 Score=58.22 Aligned_cols=39 Identities=49% Similarity=0.791 Sum_probs=36.5
Q ss_pred ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457 70 GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110 (389)
Q Consensus 70 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 110 (389)
|+++..+.+|.+.|++|+|+|++ .+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~--~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG--NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS--SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc--ccceeeCCCCEEEEEC
Confidence 46788999999999999999998 7999999999999997
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.3e-07 Score=85.80 Aligned_cols=194 Identities=12% Similarity=0.086 Sum_probs=125.0
Q ss_pred EEeecCCCCeEEEEec----CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457 43 EIVPKNDWSLMAVSLS----TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW 118 (389)
Q Consensus 43 ~~~~~~~~~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 118 (389)
-.+|+|...++|+++. .|.|.||- ++|++..... -.-.+++++|+|.. -.|+.|-.-|.+.+|...+.+.-.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~--~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEE--FVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHH--HHHhhccccceeEEEecCCceeee
Confidence 4569999999998865 57899985 6677554432 12235679999988 588888888999999988777666
Q ss_pred EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-ecc----cCCeeEEEEecCCC-----CeEEEEeC
Q 016457 119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESH----VEDVTQVHFVPNNQ-----NKVVSASV 188 (389)
Q Consensus 119 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~----~~~v~~~~~~~~~~-----~~l~~~~~ 188 (389)
....|..+|..+.|+|+|+.++++..-|.|.+|.......++... ..| .-...|...++++. ...++.+.
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD 175 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD 175 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCc
Confidence 667789999999999999999999999999999876332222211 011 12234555566532 12344444
Q ss_pred CCcEE-EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457 189 DGLIC-TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE 254 (389)
Q Consensus 189 d~~i~-i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 254 (389)
+..+- .++.+.. ..-. ...... .+++..++.++.+|+|+-.|- .+++.....
T Consensus 176 e~alD~~fnwk~~----~a~r-------s~~ksg--v~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k 228 (1416)
T KOG3617|consen 176 ESALDEPFNWKES----LAER-------SDEKSG--VPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHK 228 (1416)
T ss_pred hhhhcccccCccc----hhhc-------cccccC--CCCCcEEEEEcCCceEEEEcC-CCcEEEEEE
Confidence 44433 4443310 0000 001111 166778888899999887774 355544443
No 315
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.86 E-value=7e-06 Score=74.89 Aligned_cols=279 Identities=11% Similarity=0.099 Sum_probs=158.7
Q ss_pred CCeEEEEecCCeEEEEeCCCceeeeeecCCCC------cE--EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457 50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS------TV--NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121 (389)
Q Consensus 50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~------~v--~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 121 (389)
+..+++++.++.|.-.|..+|+.+..+..... .+ ..+... ++ ..++.++.++.|.-+|.++++.+..+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~--~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DP--RKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cC--CeEEEecCCCeEEEEECCCCCEeeeec
Confidence 34677777789999999999998877653322 01 011121 21 378888899999999999999998887
Q ss_pred cCCCC-----e-EEEEEeCCCCeEEEee---------cCCeEEEEECcCCceeeeeeecccC------------------
Q 016457 122 AGSQE-----I-FCFSFGGSTDYLLAAG---------CGSQIQFWDWRNKKQVACLEESHVE------------------ 168 (389)
Q Consensus 122 ~~~~~-----v-~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~------------------ 168 (389)
..... + .+..+. +..+++++ .++.+..+|..+++.+.++......
T Consensus 138 ~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 64321 1 122332 35555554 3678999999999988877521111
Q ss_pred -Ce-eEEEEecCCCCeEEEEeCCC------------------cEEEEecCCCCCCCccceeeeccCC----ceeeEEEe-
Q 016457 169 -DV-TQVHFVPNNQNKVVSASVDG------------------LICTFDTGGDINDDDLLESVINVGT----SVGKVGFF- 223 (389)
Q Consensus 169 -~v-~~~~~~~~~~~~l~~~~~d~------------------~i~i~d~~~~~~~~~~~~~~~~~~~----~i~~~~~~- 223 (389)
.+ ...++.+.+. .++.++.++ .|.-+|..+++..-.. ....+.. ......+.
T Consensus 216 ~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~--~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 216 GTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFY--QTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEe--eCCCCCCcccccCCCCeEEe
Confidence 01 1344555553 777777665 6888888877422111 0111100 00001111
Q ss_pred --cCCC---cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE----------
Q 016457 224 --GETN---KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG---------- 288 (389)
Q Consensus 224 --~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~---------- 288 (389)
.-++ ..+++++.+|.+..+|.++|+.+-..... ...+..+| +.+|+.+
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---------------~~~~~~~~--~~vyv~~~~~~~~~~~~ 355 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---------------EQPMAYDP--GLVYLGAFHIPLGLPPQ 355 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---------------ccccccCC--ceEEEccccccccCccc
Confidence 0122 26788889999999999999988765531 11122333 2222211
Q ss_pred ------ecCCceEEEEEeccCCccccCCCeEEEecc-cceeeeeccCC-CcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457 289 ------GTGAGTVGYFPVNYGGAATIGPPEAVLVGG-HTAVVRSVLPM-PSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD 360 (389)
Q Consensus 289 ------g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~ 360 (389)
...+|.|.-.|..+++. +-+...+ +. ..+.. ...........+..|+.++.||.|+.+|.++
T Consensus 356 ~~~~~~~~~~G~l~AlD~~tG~~------~W~~~~~~~~----~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 356 KKKRCKKPGKGGLAALDPKTGKV------VWEKREGTIR----DSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred ccCCCCCCCceEEEEEeCCCCcE------eeEeeCCccc----cccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 12467888888888875 2322211 00 00000 0000001112445678888999999999887
Q ss_pred Ccc
Q 016457 361 SSE 363 (389)
Q Consensus 361 ~~~ 363 (389)
+.+
T Consensus 426 G~~ 428 (488)
T cd00216 426 GKE 428 (488)
T ss_pred Cce
Confidence 733
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.85 E-value=1.1e-05 Score=76.67 Aligned_cols=241 Identities=12% Similarity=0.081 Sum_probs=151.4
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc----cC
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT----RS 113 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~----~~ 113 (389)
++.|.++.|.-+...++.+...|.|.+-|.++.... ....-...|.+++|+|++ +.++..+.++++.+-.- -.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDE--ELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCC--cEEEEEeCCcEEEEEeccccchh
Confidence 568999999999999999999999999998775432 222245789999999999 78888888887766432 11
Q ss_pred C-------------------eEEEEEEcC---------------------CCCeEEEEEeCCCCeEEEeec----C-CeE
Q 016457 114 F-------------------HEVWSVTAG---------------------SQEIFCFSFGGSTDYLLAAGC----G-SQI 148 (389)
Q Consensus 114 ~-------------------~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~~~----d-~~i 148 (389)
. +....|.+. .+.=+++.|--+|.++++... + ..|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 1 111122211 112235889867777776432 4 799
Q ss_pred EEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe---CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecC
Q 016457 149 QFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS---VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225 (389)
Q Consensus 149 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 225 (389)
++||.+ +..-..-. .....-.+++|-|.|. ++++-. .|+.|.+|.-++- ...............+..++|+ .
T Consensus 225 rV~drE-g~Lns~se-~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL-~hg~f~l~~p~de~~ve~L~Wn-s 299 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSE-PVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGL-RHGEFVLPFPLDEKEVEELAWN-S 299 (1265)
T ss_pred EEeccc-chhhcccC-cccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCc-cccccccCCcccccchheeeec-C
Confidence 999966 43322222 3445567899999985 887754 3567888887632 2222223333334459999999 7
Q ss_pred CCcEEEE---EecCCcEEEEEcCCCce--eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457 226 TNKHLWC---LTHIETLSIWDWKDGQN--VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV 300 (389)
Q Consensus 226 ~~~~l~~---~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~ 300 (389)
++..|++ ......|++|-+.+..- .+.+... . ..-+.|+|.....+.+.+ .+|...++++
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~-------------~-~~~~~W~p~~~~~L~v~~-~sG~~~v~~~ 364 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS-------------Q-KALLMWDPVTEKTLHVLR-ESGQRLVRDF 364 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCeEEEEEEEEecc-------------c-cccccccCCCceeEEEEe-cCCcEEEEEE
Confidence 7788877 44444699999876532 1222211 1 111778886543233333 5666655554
Q ss_pred c
Q 016457 301 N 301 (389)
Q Consensus 301 ~ 301 (389)
.
T Consensus 365 ~ 365 (1265)
T KOG1920|consen 365 A 365 (1265)
T ss_pred E
Confidence 3
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=2.8e-07 Score=83.20 Aligned_cols=201 Identities=14% Similarity=0.119 Sum_probs=134.1
Q ss_pred EEEEecCceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec
Q 016457 23 IKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS 102 (389)
Q Consensus 23 i~~w~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~ 102 (389)
++.-.+.+....+...+.+.|++++. +.|+.|+.+|.|++++.+ +.+ .+...|... ..+| .+++||+.
T Consensus 24 lkY~Ri~n~~~~~~~~D~is~~av~~--~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~G--ey~asCS~ 91 (846)
T KOG2066|consen 24 LKYERISNLVKNFLQNDAISCCAVHD--KFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEG--EYVASCSD 91 (846)
T ss_pred ceehhhhcccHHHHhhhHHHHHHhhc--ceeeeccccceEEEEecC-Ccc-ccccccccc------ccCC--ceEEEecC
Confidence 33333444444444478888888864 689999999999999976 444 333335544 3455 79999999
Q ss_pred CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCC-----CCeEEEeecCCeEEEEECcCC-ceee-eeeecccCCeeEEEE
Q 016457 103 DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGS-----TDYLLAAGCGSQIQFWDWRNK-KQVA-CLEESHVEDVTQVHF 175 (389)
Q Consensus 103 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~-~~~~-~~~~~~~~~v~~~~~ 175 (389)
||+|.|-.+-+.+...++..+ .++.+++++|+ .+++++||.-| +.++.-+-. .... .+. ...++|.++.|
T Consensus 92 DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W 168 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKW 168 (846)
T ss_pred CCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-cCccceEEEEe
Confidence 999999999998888887764 89999999987 56788888877 777764321 1111 233 56789999999
Q ss_pred ecCCCCeEEEEeCCCcEEEEecCCCCCCCc--cceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457 176 VPNNQNKVVSASVDGLICTFDTGGDINDDD--LLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK 245 (389)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 245 (389)
.. +++|-++.+| |++||+.+...... +.......+.....+.|. + ...|+.| ...+|+|..++
T Consensus 169 ~g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~-~-~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 169 RG---NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ-D-EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred cC---cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec-C-CCeEEEe-cCCeEEEEEEe
Confidence 85 4888888665 89999985431100 000111122234567776 3 3355555 44478888776
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.81 E-value=1.7e-05 Score=65.46 Aligned_cols=208 Identities=13% Similarity=0.120 Sum_probs=132.1
Q ss_pred cEEEEEEeCCCCCCEEEEEecCCe-EEEEEccCCeEEEEEEcCCCCe--EEEEEeCCCCeEEEeec-----CCeEEEEEC
Q 016457 82 TVNQISFSGPSTPHVLHSCSSDGT-IRAWDTRSFHEVWSVTAGSQEI--FCFSFGGSTDYLLAAGC-----GSQIQFWDW 153 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~iwd~ 153 (389)
....++.+|... ..++.+-.-|+ ..+||..+++....+......- -.-.|++++..|+++-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~-~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRP-EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCC-eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 345678888553 57777777664 6789999999887776543322 24689999999998755 489999999
Q ss_pred c-CCceeeeeeecccCCeeEEEEecCCCCeEEEEeC------------------CCcEEEEecCCCCCCCcccee--e--
Q 016457 154 R-NKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV------------------DGLICTFDTGGDINDDDLLES--V-- 210 (389)
Q Consensus 154 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------d~~i~i~d~~~~~~~~~~~~~--~-- 210 (389)
. +.+.+.++. .|.-.-..+.+.|+++ .|+++-- +-.+...|..++. .+.+ +
T Consensus 85 ~~~~~ri~E~~-s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~----ll~q~~Lp~ 158 (305)
T PF07433_consen 85 ARGYRRIGEFP-SHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA----LLEQVELPP 158 (305)
T ss_pred cCCcEEEeEec-CCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc----eeeeeecCc
Confidence 9 667778887 6777778899999996 5555521 2233444444432 2222 2
Q ss_pred eccCCceeeEEEecCCCcEEEEEecCCc-------EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCe
Q 016457 211 INVGTSVGKVGFFGETNKHLWCLTHIET-------LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGEN 283 (389)
Q Consensus 211 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~-------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 283 (389)
..|.-+|..+++. .++..++..-..+. |-+++. ++.+..+...... | ..-..++-++++++++..
T Consensus 159 ~~~~lSiRHLa~~-~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~----~-~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 159 DLHQLSIRHLAVD-GDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQ----W-RRLNGYIGSIAADRDGRL 230 (305)
T ss_pred cccccceeeEEec-CCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHH----H-HhhCCceEEEEEeCCCCE
Confidence 2355678888887 56655554443331 223322 2222222211100 0 013378999999999882
Q ss_pred EEEEEecCCceEEEEEeccCCc
Q 016457 284 LWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 284 ~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
+.+|+=..+.+.+||..+++.
T Consensus 231 -ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 231 -IAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred -EEEECCCCCEEEEEECCCCCE
Confidence 235555678999999999876
No 319
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.80 E-value=4.8e-08 Score=78.31 Aligned_cols=250 Identities=9% Similarity=0.093 Sum_probs=142.6
Q ss_pred CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe-----EEEEEEcCC------------CCeEEEEEeCCC--CeE
Q 016457 79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH-----EVWSVTAGS------------QEIFCFSFGGST--DYL 139 (389)
Q Consensus 79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l 139 (389)
..+.|+++.|...| .+|++|...|.|.+|.-.... ....|++|. ..|..+.|..++ ..+
T Consensus 25 ead~ItaVefd~tg--~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 25 EADKITAVEFDETG--LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccceeeEEEecccc--ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 35679999999888 799999999999999765332 223355552 457778876443 458
Q ss_pred EEeecCCeEEEEECcCCceeeeee--------ecccCCeeEEEEecCCCCeEEEEe-CCCcEEEEecCCCCCCCccceee
Q 016457 140 LAAGCGSQIQFWDWRNKKQVACLE--------ESHVEDVTQVHFVPNNQNKVVSAS-VDGLICTFDTGGDINDDDLLESV 210 (389)
Q Consensus 140 ~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~ 210 (389)
+.++.|.+|++|.+........-+ .+.++++++..-. .+--.+ .|..|...-. ....
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l-----~lprls~hd~iiaa~p~---------rvya 168 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKEL-----LLPRLSEHDEIIAAKPC---------RVYA 168 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHh-----hcccccccceEEEeccc---------eecc
Confidence 888899999999987653221111 0112222221100 000000 0111111111 1111
Q ss_pred eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec
Q 016457 211 INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT 290 (389)
Q Consensus 211 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~ 290 (389)
..|.-.+.++.+. .+.+.++ ++.|-.|.+|++.-...-..+...++.... +-..-|++..|+|....+ +.-.+
T Consensus 169 NaH~yhiNSiS~N-sD~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nme----eLteVItSaeFhp~~cn~-fmYSs 241 (460)
T COG5170 169 NAHPYHINSISFN-SDKETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNME----ELTEVITSAEFHPEMCNV-FMYSS 241 (460)
T ss_pred ccceeEeeeeeec-Cchheee-eccceeeeeccccccCCceEEEeccCccHH----HHHHHHhhcccCHhHcce-EEEec
Confidence 3466778999997 5555444 456779999998754433333322210000 012457888999986654 45566
Q ss_pred CCceEEEEEeccCCccccCCCeEE--Ee-------cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 291 GAGTVGYFPVNYGGAATIGPPEAV--LV-------GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 291 ~dg~i~i~~~~~~~~~~~~~~~~~--~~-------~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
..|.|++-|++...+-.-...+.. +. .+-...|.++ .|+++|+|+++-+ =-+|++||++-.
T Consensus 242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~---------kFs~ngryIlsRd-yltvkiwDvnm~ 311 (460)
T COG5170 242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDF---------KFSDNGRYILSRD-YLTVKIWDVNMA 311 (460)
T ss_pred CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcce---------EEcCCCcEEEEec-cceEEEEecccc
Confidence 789999999984432100000010 00 0111234444 8999999999877 468999999854
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=3.1e-06 Score=77.28 Aligned_cols=209 Identities=10% Similarity=0.146 Sum_probs=130.7
Q ss_pred EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCC-eEEEEEeCCCCeEEEeecCC-----eEEEEECcCC----
Q 016457 87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQE-IFCFSFGGSTDYLLAAGCGS-----QIQFWDWRNK---- 156 (389)
Q Consensus 87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~---- 156 (389)
+|++.+ ..++.|+.+|.|.+.+ ++.+.++.++.+... |..+-.......|++.+.|+ .|++||++..
T Consensus 30 c~~s~~--~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSSST--GSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcCCC--ceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 345555 6999999999887776 334555778877666 55555542335677777643 5999998743
Q ss_pred --ceee--eee---e-cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457 157 --KQVA--CLE---E-SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK 228 (389)
Q Consensus 157 --~~~~--~~~---~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (389)
.++. .+. . ....++.+++.+.+-. .+++|-.+|.|..+.-.--........-......+|+.+++. .++.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~-~d~~ 184 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR-SDGK 184 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe-cCCc
Confidence 2221 111 1 1356789999999874 999999999999886542111112222233456799999998 5555
Q ss_pred EEEEEecCCcEEEEEcCCCceeEE-eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc
Q 016457 229 HLWCLTHIETLSIWDWKDGQNVAS-FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT 307 (389)
Q Consensus 229 ~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~ 307 (389)
.++-......|.+|.+....+... +.. |...+.+..+++.... + ++++ +..+.+|+....+.
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~p~~~~ld~------------~G~~lnCss~~~~t~q-f-Ica~-~e~l~fY~sd~~~~-- 247 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRTPSLKVLDN------------NGISLNCSSFSDGTYQ-F-ICAG-SEFLYFYDSDGRGP-- 247 (933)
T ss_pred eeEEEEecceeEEEEecCCCcceeeecc------------CCccceeeecCCCCcc-E-EEec-CceEEEEcCCCcce--
Confidence 533333445788999884432222 333 5567778888775442 3 4443 34599999886554
Q ss_pred cCCCeEEEecccce
Q 016457 308 IGPPEAVLVGGHTA 321 (389)
Q Consensus 308 ~~~~~~~~~~~h~~ 321 (389)
...+..||..
T Consensus 248 ----cfaf~~g~kk 257 (933)
T KOG2114|consen 248 ----CFAFEVGEKK 257 (933)
T ss_pred ----eeeecCCCeE
Confidence 3444445553
No 321
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=3.6e-05 Score=60.80 Aligned_cols=105 Identities=13% Similarity=0.041 Sum_probs=77.2
Q ss_pred CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE-EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe
Q 016457 49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ-ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI 127 (389)
Q Consensus 49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 127 (389)
-|++++.|+..|.+++.++++|.....+... +.|.+ ....+++ .++..|+.|++....|.++..++.+.+......
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~--glIycgshd~~~yalD~~~~~cVykskcgG~~f 138 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDG--GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF 138 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCC--ceEEEecCCCcEEEecccccceEEecccCCcee
Confidence 4668999999999999999999887777642 22322 2234455 699999999999999999999998887765555
Q ss_pred EEEEEeCCCCeEEEeecCCeEEEEECcCC
Q 016457 128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNK 156 (389)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 156 (389)
.+-+..|-...|+++...|.+.--..+..
T Consensus 139 ~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 139 VSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ccceecCCCceEEEEeccceEEEEccCCC
Confidence 56666765667777776676665554443
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.77 E-value=5.2e-08 Score=54.66 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=36.7
Q ss_pred CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEE
Q 016457 114 FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWD 152 (389)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 152 (389)
++++.++++|...|++++|+|++..+++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 323
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.76 E-value=3.7e-05 Score=70.25 Aligned_cols=235 Identities=14% Similarity=0.121 Sum_probs=137.8
Q ss_pred CeEEEEecCCeEEEEeCCCceeeeeecCCCCc-----E-EEEEEeCCCCCCEEEEEe---------cCCeEEEEEccCCe
Q 016457 51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSST-----V-NQISFSGPSTPHVLHSCS---------SDGTIRAWDTRSFH 115 (389)
Q Consensus 51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-----v-~~i~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~ 115 (389)
..++.++.++.|.-+|.++|+.+..+...... + ....+. ++ .++.++ .++.+..+|..+++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~---~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KK---LVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CC---EEEEeccccccccCCCCcEEEEEECCCCc
Confidence 57888888999999999999998877543221 1 112222 23 455553 36789999999999
Q ss_pred EEEEEEcCCCC--------------------e-EEEEEeCCCCeEEEeecCC------------------eEEEEECcCC
Q 016457 116 EVWSVTAGSQE--------------------I-FCFSFGGSTDYLLAAGCGS------------------QIQFWDWRNK 156 (389)
Q Consensus 116 ~~~~~~~~~~~--------------------v-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~ 156 (389)
.+..++..... + ...++.+.++.+++++.++ .|.-+|++++
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 99887653110 1 1234444567788877654 7999999999
Q ss_pred ceeeeeeecccC-----CeeEEEEe----cCC--CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecC
Q 016457 157 KQVACLEESHVE-----DVTQVHFV----PNN--QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225 (389)
Q Consensus 157 ~~~~~~~~~~~~-----~v~~~~~~----~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 225 (389)
+.+.++...+.. ......+. -++ ...++.++.+|.+..+|.+++......... ...++.. +
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~-~ 338 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------EQPMAYD-P 338 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------ccccccC-C
Confidence 998876522111 00111111 112 125788888999999999987522111100 1112222 1
Q ss_pred CCcEEEEE------------------ecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457 226 TNKHLWCL------------------THIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI 287 (389)
Q Consensus 226 ~~~~l~~~------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 287 (389)
..++.+ ..+|.+.-.|+.+++.+-+....... ..|..+ .+...-.....++ +|+
T Consensus 339 --~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~--~~~~~g--~~~~~~~~~~~g~--~v~ 410 (488)
T cd00216 339 --GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIR--DSWNIG--FPHWGGSLATAGN--LVF 410 (488)
T ss_pred --ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccc--cccccC--CcccCcceEecCC--eEE
Confidence 122221 24578888898888877665532100 001000 0111101112344 678
Q ss_pred EecCCceEEEEEeccCCc
Q 016457 288 GGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 288 ~g~~dg~i~i~~~~~~~~ 305 (389)
.++.||.|+.+|..+++.
T Consensus 411 ~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 411 AGAADGYFRAFDATTGKE 428 (488)
T ss_pred EECCCCeEEEEECCCCce
Confidence 888999999999999886
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.76 E-value=7.6e-05 Score=62.44 Aligned_cols=262 Identities=11% Similarity=0.088 Sum_probs=156.6
Q ss_pred CeEEEEecCc--eeeeeecCcceEEEeecCCCCeEEEEec----------CCeEEEEeCCCceeeeeecCC---C----C
Q 016457 21 NSIKRFGLKN--SIQTNFGDDYVFEIVPKNDWSLMAVSLS----------TNVVKLYSPVTGQYSGECKGH---S----S 81 (389)
Q Consensus 21 ~~i~~w~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~---~----~ 81 (389)
+.+.++|..+ .+-.+. .+-.-.+..+||++.++++.. ...|.+||..+.++...+.-. . .
T Consensus 17 ~rv~viD~d~~k~lGmi~-~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID-TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEEETTTTEEEEEEE-EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred ceEEEEECCCCcEEEEee-cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 5788888653 222222 233345678999999987653 347999999988766543211 1 1
Q ss_pred cEEEEEEeCCCCCCEEEEEe--cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc-CCce
Q 016457 82 TVNQISFSGPSTPHVLHSCS--SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR-NKKQ 158 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~ 158 (389)
....++++.++ ++++... --.+|.|-|+..++.+..+... .+..+--. .+..+.+-|.||.+.-..+. .|+.
T Consensus 96 ~~~~~~ls~dg--k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 96 YKNMFALSADG--KFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp -GGGEEE-TTS--SEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSE
T ss_pred cccceEEccCC--cEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec-CCCceEEEecCCceEEEEECCCCCE
Confidence 22345677777 5655543 3456888888888888877763 33333323 23567888889999998887 4554
Q ss_pred eeeeee---cccCCe-eEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec----------cCCceeeEEEec
Q 016457 159 VACLEE---SHVEDV-TQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN----------VGTSVGKVGFFG 224 (389)
Q Consensus 159 ~~~~~~---~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~ 224 (389)
..+... ....++ ..-++...+. .++-.+.+|.|+-.|+..... ........ ..+...-+++++
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~--~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSA--KFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSE--EEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred eEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcc--cccCcccccCccccccCcCCcceeeeeecc
Confidence 432211 112222 2334444443 666688899999999985421 11111110 012334577875
Q ss_pred CCCcEEEEEecCC----------cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce
Q 016457 225 ETNKHLWCLTHIE----------TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT 294 (389)
Q Consensus 225 ~~~~~l~~~~~d~----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~ 294 (389)
..+.+++.. ..+ .|-+||+.+++.+..+... ..+.++..+.+.+.++++....++.
T Consensus 248 ~~~rlyvLM-h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-------------~~~~Si~Vsqd~~P~L~~~~~~~~~ 313 (342)
T PF06433_consen 248 ASGRLYVLM-HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-------------HPIDSIAVSQDDKPLLYALSAGDGT 313 (342)
T ss_dssp TTTEEEEEE-EE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-------------EEESEEEEESSSS-EEEEEETTTTE
T ss_pred ccCeEEEEe-cCCCCCCccCCceEEEEEECCCCeEEEEEeCC-------------CccceEEEccCCCcEEEEEcCCCCe
Confidence 555444332 221 6888999999999988742 4577899999877654455557899
Q ss_pred EEEEEeccCCc
Q 016457 295 VGYFPVNYGGA 305 (389)
Q Consensus 295 i~i~~~~~~~~ 305 (389)
|.+||..+++.
T Consensus 314 l~v~D~~tGk~ 324 (342)
T PF06433_consen 314 LDVYDAATGKL 324 (342)
T ss_dssp EEEEETTT--E
T ss_pred EEEEeCcCCcE
Confidence 99999999876
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2.6e-06 Score=77.80 Aligned_cols=201 Identities=11% Similarity=0.143 Sum_probs=132.7
Q ss_pred ecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-----eEEEEEccCC------
Q 016457 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG-----TIRAWDTRSF------ 114 (389)
Q Consensus 46 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~------ 114 (389)
|++.+..++.|+.+|.|.+++- .-+.+..++++...+...-+.-++. .+|++.+.|+ .|+||+++.-
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~-~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQ-NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCc-eEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 6778889999999999999883 3455677888777733333443442 5888877765 4899998632
Q ss_pred eEEE--EEEc-----CCCCeEEEEEeCCCCeEEEeecCCeEEEEECc---CCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457 115 HEVW--SVTA-----GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR---NKKQVACLEESHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 115 ~~~~--~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 184 (389)
+++. .+-. ...++.+++.+.+-..+++|-.+|.|..+.-. .......+......+|+.+++..++...+.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 3331 1112 25678999999776666666669999988532 111222333245689999999999874344
Q ss_pred EEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457 185 SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE 254 (389)
Q Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 254 (389)
+++ -..|.+|.+.+. .........++.++.+..+++..+++++++ ...+.+|+.........|.
T Consensus 189 v~T-t~~V~~y~l~gr---~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 189 VAT-TEQVMLYSLSGR---TPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEe-cceeEEEEecCC---CcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeec
Confidence 443 457999999832 123344667788899999985554444443 3479999987655555665
No 326
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.73 E-value=1.9e-05 Score=69.03 Aligned_cols=228 Identities=12% Similarity=0.092 Sum_probs=129.5
Q ss_pred ceEEEeecCCCCeEEEEecCCeEEEEeCCCceee-------------------------------------------eee
Q 016457 40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS-------------------------------------------GEC 76 (389)
Q Consensus 40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~-------------------------------------------~~~ 76 (389)
.|+.++|.++..-|++|...|.|.||.+...+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999889999999999999865321110 112
Q ss_pred cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEc--------CCCCeEEEEEeC----CC----CeEE
Q 016457 77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA--------GSQEIFCFSFGG----ST----DYLL 140 (389)
Q Consensus 77 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~----~~----~~l~ 140 (389)
....++|++++.+.-| +++.|..+|.+.|.|++....+..-.. ....++++.|.. ++ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 2346889999999777 999999999999999998877765332 134678888762 12 3578
Q ss_pred EeecCCeEEEEECc-C--Cceeeeee---ecccCCeeEEE-EecCCC-------------------CeEEEEeCCCcEEE
Q 016457 141 AAGCGSQIQFWDWR-N--KKQVACLE---ESHVEDVTQVH-FVPNNQ-------------------NKVVSASVDGLICT 194 (389)
Q Consensus 141 ~~~~d~~i~iwd~~-~--~~~~~~~~---~~~~~~v~~~~-~~~~~~-------------------~~l~~~~~d~~i~i 194 (389)
++...|.+.+|.+- . +.-...+. ..+.++|..|. ++.+.. +-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 88889999999875 1 11111111 13556666655 322210 12444445778999
Q ss_pred EecCCCCCCCccceeeeccCCceeeEEEe----cCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCC
Q 016457 195 FDTGGDINDDDLLESVINVGTSVGKVGFF----GETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVD 270 (389)
Q Consensus 195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (389)
+...+.+ ...+..........+.+. ...+..|++-..+|.+++|.+...+.+..+.-.... +..
T Consensus 240 ~~~~~~k----~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~--------d~~ 307 (395)
T PF08596_consen 240 FKPPKSK----GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL--------DSR 307 (395)
T ss_dssp E-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-----------HH
T ss_pred EeCCCCc----ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc--------ccc
Confidence 9888432 222222222233334442 134567888999999999999988888777643211 224
Q ss_pred ceeeecccCCCC
Q 016457 271 YFVDCHYPGEGE 282 (389)
Q Consensus 271 ~i~~~~~~~~~~ 282 (389)
.+....++++|+
T Consensus 308 ~~~~ssis~~Gd 319 (395)
T PF08596_consen 308 RLSSSSISRNGD 319 (395)
T ss_dssp HHTT-EE-TTS-
T ss_pred cccccEECCCCC
Confidence 556777888888
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.71 E-value=8e-05 Score=62.30 Aligned_cols=274 Identities=12% Similarity=0.160 Sum_probs=163.5
Q ss_pred CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe----------cCCeEEEEEccCCeEEEEEEcCCC-Ce-
Q 016457 60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS----------SDGTIRAWDTRSFHEVWSVTAGSQ-EI- 127 (389)
Q Consensus 60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~-~v- 127 (389)
+.+.++|.++++.+..+.. +-.-.+..+|++ +.+++++ ..-.|.+||..+..+...+..... ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdg--k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDG--KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTS--SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCC--CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4799999999998877763 233346678998 5666533 334699999999988887765532 22
Q ss_pred -----EEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCC
Q 016457 128 -----FCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGD 200 (389)
Q Consensus 128 -----~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 200 (389)
..++++.+++++++.-. ...|.+.|+..++.+.++. -.+ |....|.++.-|.+-|.||.+.-..+...
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GTS---EEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CCC---EEEEEecCCCceEEEecCCceEEEEECCC
Confidence 23567777888777655 5689999999998888876 222 22333444447888889999999998843
Q ss_pred CCCCccceeee-ccCCce-eeEEEecCCCcEEEEEecCCcEEEEEcCCCcee--EEeeccc-ccccCCccCCCCCceeee
Q 016457 201 INDDDLLESVI-NVGTSV-GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV--ASFENAR-SLASDSWTLDDVDYFVDC 275 (389)
Q Consensus 201 ~~~~~~~~~~~-~~~~~i-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~~~ 275 (389)
.+.......+. ....++ ..-++. ..+..++-.+.+|.|+-.|+...... ..+.... ......|.. +.-.-+
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP---GG~Q~~ 243 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP---GGWQLI 243 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE----SSS-E
T ss_pred CCEeEeeccccCCCCcccccccceE-CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC---cceeee
Confidence 22221111111 122222 233444 34445555788899999888765422 1221100 001123433 233446
Q ss_pred cccCCCCeEEEEEe-cCC-------ceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce-eEEE
Q 016457 276 HYPGEGENLWVIGG-TGA-------GTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI-FGWT 346 (389)
Q Consensus 276 ~~~~~~~~~~l~~g-~~d-------g~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~-~l~s 346 (389)
++++..+++|++-- +.+ ..|.++|+.+++. +..+.- ..++.+| +.+.|.+ +|++
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr------v~Ri~l--~~~~~Si---------~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR------VARIPL--EHPIDSI---------AVSQDDKPLLYA 306 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE------EEEEEE--EEEESEE---------EEESSSS-EEEE
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE------EEEEeC--CCccceE---------EEccCCCcEEEE
Confidence 77777777665431 111 2577778887765 566652 3456677 6666654 5554
Q ss_pred -ecCCCeEEEEeccCCcc
Q 016457 347 -GGEDGRLCCWLSDDSSE 363 (389)
Q Consensus 347 -~~~dg~v~iW~~~~~~~ 363 (389)
...++.|.+||...+..
T Consensus 307 ~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EETTTTEEEEEETTT--E
T ss_pred EcCCCCeEEEEeCcCCcE
Confidence 35689999999987733
No 328
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.69 E-value=2.1e-05 Score=68.72 Aligned_cols=223 Identities=13% Similarity=0.124 Sum_probs=121.8
Q ss_pred cCCCCeEEEEec---------CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 47 KNDWSLMAVSLS---------TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 47 ~~~~~~l~~~~~---------d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
|||+++++.... .+.+.|||+++++....... ...+....|+|++ +.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g--~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDG--KYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSS--TEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCC--CeeEEEe-cCceEEEECCCCCeE
Confidence 578877776432 46799999998765554443 5678899999999 6777765 678999998777544
Q ss_pred EEEEcCC-----------------CCeEEEEEeCCCCeEEEeec-CCe--------------------------------
Q 016457 118 WSVTAGS-----------------QEIFCFSFGGSTDYLLAAGC-GSQ-------------------------------- 147 (389)
Q Consensus 118 ~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~-d~~-------------------------------- 147 (389)
+.-.... +.-..+-|+|++.+|+.... +..
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np 156 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP 156 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence 3221111 12346789999998877654 222
Q ss_pred ---EEEEECcCCceee-eee---ecccCCeeEEEEecCCCCeEEEEe--CC---CcEEEEecCCCCCCCccceeeeccCC
Q 016457 148 ---IQFWDWRNKKQVA-CLE---ESHVEDVTQVHFVPNNQNKVVSAS--VD---GLICTFDTGGDINDDDLLESVINVGT 215 (389)
Q Consensus 148 ---i~iwd~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~~l~~~~--~d---~~i~i~d~~~~~~~~~~~~~~~~~~~ 215 (389)
+.++|+.+++... ... ......+..+.|.+++. .|+..- .+ ..+.++|..++.. ..+. ......
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~-~l~~~~~nR~q~~~~l~~~d~~tg~~--~~~~-~e~~~~ 232 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK-RLWVQWLNRDQNRLDLVLCDASTGET--RVVL-EETSDG 232 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE-EEEEEEEETTSTEEEEEEEEECTTTC--EEEE-EEESSS
T ss_pred ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc-EEEEEEcccCCCEEEEEEEECCCCce--eEEE-EecCCc
Confidence 2233443333211 000 01233477888988874 344433 22 2366777765431 1111 122222
Q ss_pred ce---eeEEEe-cCCCcEEEEEecCC--cEEEEEcCCCceeEEeecccccccCCccCCCCCcee-eecccCCCCeEEEEE
Q 016457 216 SV---GKVGFF-GETNKHLWCLTHIE--TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV-DCHYPGEGENLWVIG 288 (389)
Q Consensus 216 ~i---~~~~~~-~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~ 288 (389)
.| ....+. +.+..++.....+| .|.+++...+. ...+... .-.|. -+.++++++.+|+ +
T Consensus 233 Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G------------~~~V~~i~~~d~~~~~iyf-~ 298 (353)
T PF00930_consen 233 WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSG------------DWEVTSILGWDEDNNRIYF-T 298 (353)
T ss_dssp SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-S------------SS-EEEEEEEECTSSEEEE-E
T ss_pred ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccC------------ceeecccceEcCCCCEEEE-E
Confidence 32 244554 56667777777887 55566665554 3344331 13443 4677888776543 4
Q ss_pred ecC
Q 016457 289 GTG 291 (389)
Q Consensus 289 g~~ 291 (389)
+..
T Consensus 299 a~~ 301 (353)
T PF00930_consen 299 ANG 301 (353)
T ss_dssp ESS
T ss_pred ecC
Confidence 433
No 329
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.68 E-value=1.6e-08 Score=88.77 Aligned_cols=200 Identities=17% Similarity=0.204 Sum_probs=134.2
Q ss_pred CcceEEEeecCCC--CeEEEEecCCeEEEEeCCCcee--eeeecCCCCcEEEEEEeCCCCCCEEEEEe----cCCeEEEE
Q 016457 38 DDYVFEIVPKNDW--SLMAVSLSTNVVKLYSPVTGQY--SGECKGHSSTVNQISFSGPSTPHVLHSCS----SDGTIRAW 109 (389)
Q Consensus 38 ~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----~dg~i~iw 109 (389)
...+.|+++..+. .++++|..+|.|-+-.+..... .....+|....++++|++-.. +.||.|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDt-n~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDT-NHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccH-HHHHhhhhhhcccCCccce
Confidence 4567788766543 5889999999999988764322 233456888999999998753 4666663 35679999
Q ss_pred EccCC--eEE--EEEEc-CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeeeeeecccCCeeEEEEecCCCCeE
Q 016457 110 DTRSF--HEV--WSVTA-GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKV 183 (389)
Q Consensus 110 d~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l 183 (389)
|+.++ .+. ..|.. ......+++|..+.+.+++|.....+.++|+|... ....+ .+..+..+...|-..+++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFSPNYF 211 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCCCCce
Confidence 99876 222 22222 23456688888666777777778899999998432 22232 345677788888554577
Q ss_pred EEEeCCCcEEEEe-cCCCCCCCccceeee----ccCCceeeEEEecCCCcEEEEEecC-CcEEEEEcC
Q 016457 184 VSASVDGLICTFD-TGGDINDDDLLESVI----NVGTSVGKVGFFGETNKHLWCLTHI-ETLSIWDWK 245 (389)
Q Consensus 184 ~~~~~d~~i~i~d-~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~d-~~i~i~d~~ 245 (389)
++-. ||.|.+|| .+.- ..++..+. .....+..++|+|.....+++...| ++|++||+.
T Consensus 212 cs~~-dg~iAiwD~~rni---enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNI---ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eccc-cCceeeccchhhh---ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 6655 99999999 4421 12222222 2233589999997666667777665 589999986
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.67 E-value=6.4e-05 Score=66.78 Aligned_cols=223 Identities=13% Similarity=0.127 Sum_probs=116.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 117 (389)
.-....++++|+|+++++++ +|.-.|+.....+... .+.-...+|.+.+ .+|+-...++|.|+.--+.+..
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n---~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSSRN---RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-TSS---EEEEE-TTS-EEEEETTEE-TT
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEecCc---cEEEEECCCeEEEEEcCccccc
Confidence 45578999999999999965 8888888844333322 2344568899855 6888887889999732222222
Q ss_pred EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197 (389)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (389)
..++.. ..+..+-. |..|++.+ ++.|.+||+.+++.+.++. .. +|..+.|++++. +++..+.+ .+.+++.
T Consensus 103 k~i~~~-~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~-~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 103 KSIKLP-FSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRID--VS-AVKYVIWSDDGE-LVALVTKD-SIYILKY 172 (443)
T ss_dssp -----S-S-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEES--S--E-EEEEE-TTSS-EEEEE-S--SEEEEEE
T ss_pred eEEcCC-cccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEe--cC-CCcEEEEECCCC-EEEEEeCC-eEEEEEe
Confidence 344432 23444433 55555554 4689999999999999987 22 389999999995 77777744 7888877
Q ss_pred CCC------C-CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce--eEEeecccccccCCccCCC
Q 016457 198 GGD------I-NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN--VASFENARSLASDSWTLDD 268 (389)
Q Consensus 198 ~~~------~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~ 268 (389)
... . ...............|.+.+|. .+ .++-.+.. .|+. +..|+. +..+.
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~-~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld-------------- 232 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWV-ED--CFIYTTSN-HLKY--LVNGETGIIAHLD-------------- 232 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEE-TT--EEEEE-TT-EEEE--EETTEEEEEEE-S--------------
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEE-cC--EEEEEcCC-eEEE--EEcCCcceEEEcC--------------
Confidence 621 0 0001233333336788899997 44 33333333 6665 333432 22222
Q ss_pred CCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
.++.-+.+.+..+ .+.....|+.+..+.+..
T Consensus 233 -~~~yllgy~~~~~--~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 -KPLYLLGYLPKEN--RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -S--EEEEEETTTT--EEEEE-TT--EEEEE--H
T ss_pred -CceEEEEEEccCC--EEEEEECCCCEEEEEECH
Confidence 3445555666556 445666788888877653
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=0.00013 Score=57.72 Aligned_cols=142 Identities=8% Similarity=0.058 Sum_probs=101.3
Q ss_pred CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeE-
Q 016457 50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIF- 128 (389)
Q Consensus 50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~- 128 (389)
..+++.|+..+.+.--|..+|+.+..-. -...|.+-+.- -+ ++++.|+..|.+.+.+.++|...+.+..- +.|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg--dfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG--DFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC--CEEEEEEccCcEEEEEecchhheeeeeeh-hhhcc
Confidence 4688889999999999999998776532 22334433333 24 58999999999999999999888887764 3333
Q ss_pred EEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457 129 CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG 198 (389)
Q Consensus 129 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (389)
.....++++.+..++.|+..+..|.++...+...+ .......+-+..|-.. .|..+...|.+.-....
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk-cgG~~f~sP~i~~g~~-sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK-CGGGTFVSPVIAPGDG-SLYAAITAGAVLAVTKN 165 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecc-cCCceeccceecCCCc-eEEEEeccceEEEEccC
Confidence 33455678899999999999999999999998877 4444444556666332 45555556666555554
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.59 E-value=8.3e-05 Score=67.34 Aligned_cols=230 Identities=11% Similarity=-0.045 Sum_probs=132.3
Q ss_pred eEEEEecCCeEEEEeCCCceeeeeecC-------------CCCcEE-------EEEEe----C---------CCCCCEEE
Q 016457 52 LMAVSLSTNVVKLYSPVTGQYSGECKG-------------HSSTVN-------QISFS----G---------PSTPHVLH 98 (389)
Q Consensus 52 ~l~~~~~d~~i~iw~~~~~~~~~~~~~-------------~~~~v~-------~i~~~----~---------~~~~~~l~ 98 (389)
.|.+|+..|.++|+-+.+++.+..+.. .+..|. .+.|- | +| ++|+
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydG--r~~f 145 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDG--RYLF 145 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccce--eEEE
Confidence 467888899999999888876665421 011111 01110 0 22 4555
Q ss_pred EEec-CCeEEEEEccCCeEEEEEEcC-CCCeEEEEEe--CCCCeEEEeec------------------CCeEEEEECcCC
Q 016457 99 SCSS-DGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFG--GSTDYLLAAGC------------------GSQIQFWDWRNK 156 (389)
Q Consensus 99 s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~------------------d~~i~iwd~~~~ 156 (389)
.-.. +..|...+++..++-+.+... ...+..+.+- |+..++++.+. .+.+.+.|..+.
T Consensus 146 indk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm 225 (635)
T PRK02888 146 INDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM 225 (635)
T ss_pred EecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc
Confidence 5442 445555565555444433322 2223333332 33333333332 456777888877
Q ss_pred ceeeeeeecccCCeeEEEEecCCCCeEEEEe----------------------------------------CCCcEEEEe
Q 016457 157 KQVACLEESHVEDVTQVHFVPNNQNKVVSAS----------------------------------------VDGLICTFD 196 (389)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------------------------------------~d~~i~i~d 196 (389)
+...++. -......++++|+++ ++++.+ .++.|.+.|
T Consensus 226 eV~~qV~--Vdgnpd~v~~spdGk-~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID 302 (635)
T PRK02888 226 EVAWQVM--VDGNLDNVDTDYDGK-YAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVD 302 (635)
T ss_pred eEEEEEE--eCCCcccceECCCCC-EEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEE
Confidence 7776665 223446677888876 555553 123466666
Q ss_pred cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe-cCCcEEEEEcCCCce------------eEEeecccccccCC
Q 016457 197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT-HIETLSIWDWKDGQN------------VASFENARSLASDS 263 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------------~~~~~~~~~~~~~~ 263 (389)
.++..+....+............+.++ |+++++++++ .+.++.++|+.+.+. ..+..-
T Consensus 303 ~~t~~~~~~~v~~yIPVGKsPHGV~vS-PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-------- 373 (635)
T PRK02888 303 GRKAANAGSALTRYVPVPKNPHGVNTS-PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-------- 373 (635)
T ss_pred CCccccCCcceEEEEECCCCccceEEC-CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--------
Confidence 664111112344445566777889999 6777666555 488999999987553 222211
Q ss_pred ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
.......+|.++|. ...+-.-|..|..|++..
T Consensus 374 -----GlGPLHTaFDg~G~--aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 -----GLGPLHTAFDGRGN--AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -----CCCcceEEECCCCC--EEEeEeecceeEEEehHH
Confidence 13345678888887 557788899999999986
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=9e-06 Score=73.83 Aligned_cols=192 Identities=7% Similarity=0.079 Sum_probs=134.7
Q ss_pred CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee
Q 016457 80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV 159 (389)
Q Consensus 80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 159 (389)
...+.|++++. +.|+-|..+|.|++.+.. +.+ .+...|... ...|.++++++.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~~----~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVHD----KFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhhc----ceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 45677777762 589999999999999875 333 333444332 447999999999999999999888888
Q ss_pred eeeeecccCCeeEEEEecC----CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec
Q 016457 160 ACLEESHVEDVTQVHFVPN----NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH 235 (389)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (389)
.++. ...++.+++++|+ ....+++|+.-| +.++.-+--. .... .......++|.++.|. +++++-++.
T Consensus 107 ~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg-nk~~-v~l~~~eG~I~~i~W~---g~lIAWand 178 (846)
T KOG2066|consen 107 TQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG-NKDS-VVLSEGEGPIHSIKWR---GNLIAWAND 178 (846)
T ss_pred eeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc-Cccc-eeeecCccceEEEEec---CcEEEEecC
Confidence 7776 6789999999998 123799999888 7777655211 1111 1344567899999997 457777666
Q ss_pred CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 236 IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 236 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
+| |++||+.+++.+..+........ .+.....+.|.++.+ |+.| ..-+|+|..+..
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~R------~e~fpphl~W~~~~~---LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSVR------PELFPPHLHWQDEDR---LVIG-WGDSVKICSIKK 234 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCCC------cccCCCceEecCCCe---EEEe-cCCeEEEEEEec
Confidence 65 88999999888877764331111 223345677877654 4555 555799998883
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.56 E-value=0.0002 Score=58.29 Aligned_cols=202 Identities=13% Similarity=0.126 Sum_probs=115.2
Q ss_pred eeeec-CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceeeeeecCC-CCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457 33 QTNFG-DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECKGH-SSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109 (389)
Q Consensus 33 ~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 109 (389)
+.+.+ ...+..++|+|+.+ ++++....+.|..++.+ |+.+..+.-. .+..-.|++..++ .++++--.++.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~--~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNG--RYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STT--EEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCC--EEEEEEcCCCcEEEE
Confidence 34555 56699999999755 66666667888888864 7877776432 3567889998777 566665568999999
Q ss_pred EccCC------eEEEEEE-----cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC---Cceeeeee-------ecccC
Q 016457 110 DTRSF------HEVWSVT-----AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN---KKQVACLE-------ESHVE 168 (389)
Q Consensus 110 d~~~~------~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~-------~~~~~ 168 (389)
++... .....+. .++..+..++|+|.++.++++-......+|.++. ...+.... .....
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 88422 1122222 2356799999999999999987766666666653 11111111 12345
Q ss_pred CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec-------cCCceeeEEEecCCCcEEEEEecCCcEEE
Q 016457 169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN-------VGTSVGKVGFFGETNKHLWCLTHIETLSI 241 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~d~~i~i 241 (389)
.+.+++++|...++++....+..|.++|..... .....+.. .-...-.|+|. ++|. |+..+.-+..++
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~---~~~~~L~~g~~gl~~~~~QpEGIa~d-~~G~-LYIvsEpNlfy~ 246 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRV---VSSLSLDRGFHGLSKDIPQPEGIAFD-PDGN-LYIVSEPNLFYR 246 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT--E---EEEEE-STTGGG-SS---SEEEEEE--TT---EEEEETTTEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCCCE---EEEEEeCCcccCcccccCCccEEEEC-CCCC-EEEEcCCceEEE
Confidence 688999999987688888888899999966321 11111111 01246788998 5664 555556555555
Q ss_pred E
Q 016457 242 W 242 (389)
Q Consensus 242 ~ 242 (389)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 335
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=8.1e-07 Score=74.98 Aligned_cols=216 Identities=11% Similarity=0.044 Sum_probs=139.1
Q ss_pred CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC--C-ceeeeeeecccCCeeEEEEecCCCCeEEEEeC-CCcEEEEecC
Q 016457 123 GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN--K-KQVACLEESHVEDVTQVHFVPNNQNKVVSASV-DGLICTFDTG 198 (389)
Q Consensus 123 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~i~d~~ 198 (389)
|...|+.+... ..+.++.++.||.++.|--.. + +.+..+. .|...|.+++.+-++- ++.+.+. |..++++|+.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccce-eEeeccCcccceeEEEee
Confidence 56777777766 677889999999999997543 2 2344454 7888999999999984 8888777 9999999998
Q ss_pred CCCCCCccceeeeccCCceeeEEEecCCC---cEEE-EEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457 199 GDINDDDLLESVINVGTSVGKVGFFGETN---KHLW-CLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD 274 (389)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (389)
.-. +............+.|.-..+ ..++ +.-.++.+.++|-....+..-+.... |..+|..
T Consensus 85 n~D-----minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl----------H~sPV~~ 149 (558)
T KOG0882|consen 85 NFD-----MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL----------HFSPVKK 149 (558)
T ss_pred ccc-----hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc----------ccCceEE
Confidence 421 111111222222233321222 1233 33456799999976554333332222 8899999
Q ss_pred ecccCCCCeEEEEEecCCceEEEEEecc-CCccccCCCeEEEecccceeeeecc-CCCcccCCCCCCCceeEEEecCCCe
Q 016457 275 CHYPGEGENLWVIGGTGAGTVGYFPVNY-GGAATIGPPEAVLVGGHTAVVRSVL-PMPSVQGRPAQSHGIFGWTGGEDGR 352 (389)
Q Consensus 275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~~s~~~~~l~s~~~dg~ 352 (389)
+.+.+-++ .+++....|.|.-|.... .+. ........+ -|........ ......+..|+|+|..+.+-+.|.+
T Consensus 150 i~y~qa~D--s~vSiD~~gmVEyWs~e~~~qf-Pr~~l~~~~--K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk 224 (558)
T KOG0882|consen 150 IRYNQAGD--SAVSIDISGMVEYWSAEGPFQF-PRTNLNFEL--KHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK 224 (558)
T ss_pred EEeecccc--ceeeccccceeEeecCCCcccC-ccccccccc--cccchhhcccccccCccceEEccccCcccccCcccE
Confidence 99999998 678888899999998874 111 000011111 2332222221 1111222389999999999999999
Q ss_pred EEEEeccCC
Q 016457 353 LCCWLSDDS 361 (389)
Q Consensus 353 v~iW~~~~~ 361 (389)
||++.+..+
T Consensus 225 VR~F~~KtG 233 (558)
T KOG0882|consen 225 VRGFVFKTG 233 (558)
T ss_pred EEEEEeccc
Confidence 999999877
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.54 E-value=3.6e-05 Score=69.11 Aligned_cols=154 Identities=10% Similarity=0.107 Sum_probs=103.4
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 116 (389)
...|.--+++..+++++.|++.|.+++|+-..++....- .+-.+.+..+..+++. .++|.|+..|.|.++.+....+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e--~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE--YLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh--HhhhhhcCCceEEeehhhccCC
Confidence 344444456677889999999999999997765543322 2244556667778777 6888899999999998876432
Q ss_pred E-----EEE-EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC----ceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457 117 V-----WSV-TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK----KQVACLEESHVEDVTQVHFVPNNQNKVVSA 186 (389)
Q Consensus 117 ~-----~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 186 (389)
- ... +.|+..|++++|++++..+++|...|+|.+-.+.+. -..+.+. ...+.|..+..... +|+++
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~q~---~LLVS 186 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL-SEDSEIVQLDYLQS---YLLVS 186 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceee-ccCcceEEeecccc---eehHh
Confidence 1 111 235788999999999999999999999999888762 1122232 34566777776653 33333
Q ss_pred eCCCcEEEEecC
Q 016457 187 SVDGLICTFDTG 198 (389)
Q Consensus 187 ~~d~~i~i~d~~ 198 (389)
+.- ...+++..
T Consensus 187 tl~-r~~Lc~tE 197 (726)
T KOG3621|consen 187 TLT-RCILCQTE 197 (726)
T ss_pred hhh-hhheeecc
Confidence 322 23455555
No 337
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.51 E-value=0.00075 Score=60.71 Aligned_cols=245 Identities=13% Similarity=0.132 Sum_probs=137.0
Q ss_pred EEEeecCCCCeEEEEec-CC----eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-----------e
Q 016457 42 FEIVPKNDWSLMAVSLS-TN----VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG-----------T 105 (389)
Q Consensus 42 ~~~~~~~~~~~l~~~~~-d~----~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----------~ 105 (389)
..++++|+|+++|.+-+ .| .++++|+++|+.+...-... ....+.|.+++ +.|+....+. .
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~--~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDG--KGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTS--SEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCC--CEEEEEEeCcccccccCCCCcE
Confidence 36789999999987744 34 69999999997765321111 12239999998 4554443222 3
Q ss_pred EEEEEccCCeE--EEEEEcCCCC--eEEEEEeCCCCeEEEeec---C-CeEEEEECcCC----ceeeeeeecccCCeeEE
Q 016457 106 IRAWDTRSFHE--VWSVTAGSQE--IFCFSFGGSTDYLLAAGC---G-SQIQFWDWRNK----KQVACLEESHVEDVTQV 173 (389)
Q Consensus 106 i~iwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-~~i~iwd~~~~----~~~~~~~~~~~~~v~~~ 173 (389)
|..|.+.+... ...+...... ...+..++++++++.... + ..+.+.|+..+ .....+. .....+...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-~~~~~~~~~ 282 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-PREDGVEYY 282 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-ESSSS-EEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-CCCCceEEE
Confidence 77788776532 3445444333 568888988888776554 3 56888888764 2333443 233334333
Q ss_pred EEecCCCCeEEEEe---CCCcEEEEecCCCCCCCccceeeeccCC--ceeeEEEecCCCcEEEEEecCC--cEEEEEcCC
Q 016457 174 HFVPNNQNKVVSAS---VDGLICTFDTGGDINDDDLLESVINVGT--SVGKVGFFGETNKHLWCLTHIE--TLSIWDWKD 246 (389)
Q Consensus 174 ~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~ 246 (389)
.-+..+. +++... ..+.|...++..... ......+..+.. .+..+... .+.+++....++ .|+++++..
T Consensus 283 v~~~~~~-~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 283 VDHHGDR-LYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEEETTE-EEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-
T ss_pred EEccCCE-EEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCC
Confidence 3333332 444332 246677777774321 011123444444 45666654 334555555555 788999883
Q ss_pred CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC--ceEEEEEeccCCc
Q 016457 247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA--GTVGYFPVNYGGA 305 (389)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d--g~i~i~~~~~~~~ 305 (389)
+.....+... ..+.+..+...++++.+++...+.- ++++.||+.+++.
T Consensus 359 ~~~~~~~~~p-----------~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 359 GKESREIPLP-----------EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TEEEEEEESS-----------SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CcEEeeecCC-----------cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4444444321 2244666777777777666555554 6788888888775
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.50 E-value=3.4e-08 Score=86.71 Aligned_cols=208 Identities=13% Similarity=0.128 Sum_probs=135.2
Q ss_pred CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE--EEEEcCCCCeEEEEEeCCCCeEEEeec-----CCeEEEEE
Q 016457 80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV--WSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWD 152 (389)
Q Consensus 80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd 152 (389)
...+.|+++.-+...-.++.|..+|.|.+-.++...-. .....+....++++|++-+...+++|. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34577787765553247888999999999888754332 234456788999999987777777776 57899999
Q ss_pred CcCC--ceee--eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457 153 WRNK--KQVA--CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK 228 (389)
Q Consensus 153 ~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (389)
+.++ .+.. .+..+......+++|..+.+ ++++|...+.+.++|+|... .....-....+..+...|-.+.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~-----~~~~svnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSL-----DSVSSVNTKYVQGITVDPFSPN 209 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhh-----hhhhhhhhhhcccceecCCCCC
Confidence 9876 2222 22211334566888987775 89999999999999999321 1111112235666777755667
Q ss_pred EEEEEecCCcEEEEEc-CCCc-eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 229 HLWCLTHIETLSIWDW-KDGQ-NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 229 ~l~~~~~d~~i~i~d~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
++++.. |+.|.+||. .+-+ ++..+..... .....+..++|.|...++..+..-..++|+.+++..
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N--------~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNEN--------KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCC--------CcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 777665 999999993 3222 2222211100 022458899999987664444444558999998764
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.49 E-value=0.00023 Score=57.89 Aligned_cols=213 Identities=10% Similarity=0.107 Sum_probs=116.8
Q ss_pred eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEee-cCCeEEEEE
Q 016457 75 ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAG-CGSQIQFWD 152 (389)
Q Consensus 75 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd 152 (389)
.+.+-...+..|+|.|+.. .++++....+.|...+. +|+.++.+... .+....|++..++ .++.+. .++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~-tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTG-TLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTT-EEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCC-eEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEE
Confidence 4455556799999999863 57777778888888886 57888887755 4678899998444 554444 489999998
Q ss_pred CcCCc------eeeeee----ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCc-ccee------eeccCC
Q 016457 153 WRNKK------QVACLE----ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDD-LLES------VINVGT 215 (389)
Q Consensus 153 ~~~~~------~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~------~~~~~~ 215 (389)
+.... ....+. ..+...+..++|+|.+. .|+.+-...-..+|.++....... .... ....-.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 84321 112222 12445689999999985 777777666677777763110000 0000 111234
Q ss_pred ceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceE
Q 016457 216 SVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV 295 (389)
Q Consensus 216 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i 295 (389)
.+.+++++|..+.+++.+.....|..+| .+|+.+..+.-........ ......-.++|.++|+ +.++ ++-+..
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~---~~~~QpEGIa~d~~G~--LYIv-sEpNlf 244 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLS---KDIPQPEGIAFDPDGN--LYIV-SEPNLF 244 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-S---S---SEEEEEE-TT----EEEE-ETTTEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcc---cccCCccEEEECCCCC--EEEE-cCCceE
Confidence 5788999988888888888889999999 6687776655322110000 0113466788999885 3333 355555
Q ss_pred EEE
Q 016457 296 GYF 298 (389)
Q Consensus 296 ~i~ 298 (389)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.49 E-value=0.00011 Score=64.53 Aligned_cols=209 Identities=9% Similarity=0.050 Sum_probs=116.6
Q ss_pred cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-------------------------------------------eEEE
Q 016457 82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-------------------------------------------HEVW 118 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------------------------------------~~~~ 118 (389)
.|+.+.|.++. .-|+.|...|.|.||..... .+..
T Consensus 3 ~v~~vs~a~~t--~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 3 SVTHVSFAPET--LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp -EEEEEEETTT--TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred eEEEEEecCCC--ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 47788888776 57888888888888765321 1222
Q ss_pred EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-------ecccCCeeEEEEec-----CC--CCeEE
Q 016457 119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-------ESHVEDVTQVHFVP-----NN--QNKVV 184 (389)
Q Consensus 119 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~-----~~--~~~l~ 184 (389)
.++...++|++++.+ +=+.++++..+|.+.|.|+|....+..-. ......++++.|.- ++ .-.++
T Consensus 81 l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 81 LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 233346899999998 77888889989999999999877765522 11234678888862 11 12789
Q ss_pred EEeCCCcEEEEecCC-CCCCC--ccceeeeccCCceeeEEEe-cCC-------------------CcEEEEEecCCcEEE
Q 016457 185 SASVDGLICTFDTGG-DINDD--DLLESVINVGTSVGKVGFF-GET-------------------NKHLWCLTHIETLSI 241 (389)
Q Consensus 185 ~~~~d~~i~i~d~~~-~~~~~--~~~~~~~~~~~~i~~~~~~-~~~-------------------~~~l~~~~~d~~i~i 241 (389)
+|+..|.+.+|.+.. ..... ........+.++|..+... ... -.-+++...+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 999999999998862 11000 1111112455666555532 110 012455556778999
Q ss_pred EEcCCCceeEEeecccccccCCccCCCCCceeeecccC---CCCeEEEEEecCCceEEEEEeccCCc
Q 016457 242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG---EGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
+...+.+..+.... .......+.+.+ ......|++-..+|.|++|.+..-+.
T Consensus 240 ~~~~~~k~~~K~~~------------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 240 FKPPKSKGAHKSFD------------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp E-TT---EEEEE-S------------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EeCCCCcccceeec------------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 99988777665543 112233344432 11223678888999999999987544
No 341
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.47 E-value=4.1e-05 Score=72.93 Aligned_cols=177 Identities=15% Similarity=0.172 Sum_probs=113.9
Q ss_pred cCCCCeEEEEecCceeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCC----C-------------------ce
Q 016457 17 CDNVNSIKRFGLKNSIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV----T-------------------GQ 71 (389)
Q Consensus 17 ~~~~~~i~~w~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~----~-------------------~~ 71 (389)
...+|.|.+-|..+....+.| ..+|.+++|+||...++..+..+++.+-+-. . |+
T Consensus 86 ~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr 165 (1265)
T KOG1920|consen 86 ITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR 165 (1265)
T ss_pred EecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc
Confidence 345566666666665555666 8999999999999999999887777765420 0 01
Q ss_pred eeeeecCCC---------------------CcEEEEEEeCCCCCCEEEEEe----cC-CeEEEEEccCCeEEEEEEcCCC
Q 016457 72 YSGECKGHS---------------------STVNQISFSGPSTPHVLHSCS----SD-GTIRAWDTRSFHEVWSVTAGSQ 125 (389)
Q Consensus 72 ~~~~~~~~~---------------------~~v~~i~~~~~~~~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~~~~ 125 (389)
....|+|.. +.=+.|.|.-+| +++++.. .+ ..|++||-+ |..-..-.....
T Consensus 166 keTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg--~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~ 242 (1265)
T KOG1920|consen 166 KETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG--EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEG 242 (1265)
T ss_pred cceeeecchhhhcccccccccccccchhhccCCceEEEccCC--cEEEEEEEeccCCceeEEEeccc-chhhcccCcccc
Confidence 111222111 112358898888 7888732 23 789999966 433222222234
Q ss_pred CeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceee----eeeecccCCeeEEEEecCCCCeEEE---EeCCCcEEEE
Q 016457 126 EIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVA----CLEESHVEDVTQVHFVPNNQNKVVS---ASVDGLICTF 195 (389)
Q Consensus 126 ~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~---~~~d~~i~i~ 195 (389)
.=.+++|-|.|..+++... |+.|.+|.- +|-.-. .+. .....+..++|+.++. .|++ ......|++|
T Consensus 243 l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p-~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 243 LQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFP-LDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLW 319 (1265)
T ss_pred cccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCc-ccccchheeeecCCCC-ceeeeecccccceEEEE
Confidence 4568999998888888654 678999873 343222 222 2334499999999985 7777 4445559999
Q ss_pred ecCC
Q 016457 196 DTGG 199 (389)
Q Consensus 196 d~~~ 199 (389)
-+.+
T Consensus 320 t~~N 323 (1265)
T KOG1920|consen 320 TTGN 323 (1265)
T ss_pred EecC
Confidence 8873
No 342
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=1.9e-05 Score=72.40 Aligned_cols=262 Identities=14% Similarity=0.191 Sum_probs=147.2
Q ss_pred CCCeEEEEe-cCceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE
Q 016457 19 NVNSIKRFG-LKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL 97 (389)
Q Consensus 19 ~~~~i~~w~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l 97 (389)
..|+|.||- .+++.+...-+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++| ..+
T Consensus 39 r~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G--~~l 116 (1416)
T KOG3617|consen 39 RGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG--TVL 116 (1416)
T ss_pred CCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCC--CeE
Confidence 346777663 33433322224556789999999899999999999999988777666667799999999999999 799
Q ss_pred EEEecCCeEEEEEccCCeEEEE--EEcC--CCCeE--EEEEeCCCC------eEEEeecCCeEE-EEECcCCceeeeeee
Q 016457 98 HSCSSDGTIRAWDTRSFHEVWS--VTAG--SQEIF--CFSFGGSTD------YLLAAGCGSQIQ-FWDWRNKKQVACLEE 164 (389)
Q Consensus 98 ~s~~~dg~i~iwd~~~~~~~~~--~~~~--~~~v~--~~~~~~~~~------~l~~~~~d~~i~-iwd~~~~~~~~~~~~ 164 (389)
+++..-|.|.+|....-..+.. +-.| ...++ |...++++. ..++++.+..+- .++.+....-....
T Consensus 117 ~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~- 195 (1416)
T KOG3617|consen 117 MTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE- 195 (1416)
T ss_pred EEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-
Confidence 9999999999998763222211 1112 23333 444454432 234455544433 33333211111111
Q ss_pred cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457 165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW 244 (389)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 244 (389)
|.+ .|+| ..++.++.+|+|+..|-... ........+.| .+-|.+ ....+.+...+-++.++-.
T Consensus 196 -ksg-------v~~g-~~F~~~~~~GtVyyvdq~g~------~~~V~k~dS~v-QmLf~~-~~eai~~i~e~lr~~l~~v 258 (1416)
T KOG3617|consen 196 -KSG-------VPKG-TEFLFAGKSGTVYYVDQNGR------QRTVHKLDSEV-QMLFMG-YCEAISIIIEFLRDCLIFV 258 (1416)
T ss_pred -ccC-------CCCC-cEEEEEcCCceEEEEcCCCc------EEEEEEccchH-HHHHhc-ccceEEEEeeeceeeEEEe
Confidence 111 3667 48888889999998886632 22222222221 122221 1122222222222222211
Q ss_pred -CCCcee----EEee---ccc----------c--cccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 245 -KDGQNV----ASFE---NAR----------S--LASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 245 -~~~~~~----~~~~---~~~----------~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
.+|... ..+. +.+ . .....+.......+.+++++..+. .|+.|...|.+.+|.-..
T Consensus 259 ~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~--~l~agt~~gnv~~w~~v~ 334 (1416)
T KOG3617|consen 259 LAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEI--RLWAGTKEGNVTIWLDVN 334 (1416)
T ss_pred cCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccce--EEEecccCCcEEEeeecC
Confidence 111100 0000 000 0 001112233557899999999887 779999999999995443
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.42 E-value=0.00018 Score=65.32 Aligned_cols=224 Identities=10% Similarity=0.044 Sum_probs=130.3
Q ss_pred ecCCCCeEEEEe-cCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC----CeEEEEEccCCeEEEEE
Q 016457 46 PKNDWSLMAVSL-STNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD----GTIRAWDTRSFHEVWSV 120 (389)
Q Consensus 46 ~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~ 120 (389)
+.|||+.+...+ ..+.+.+.|.++.+...++..- +....+.+++++ .++++.+.+ .++..-+..+...+..+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdG--k~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDG--KYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCC--CEEEEeccCcccCcceeeeccccCceEEEE
Confidence 445665443322 2456777787777666665432 244667888888 577666532 23333333222222222
Q ss_pred EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC-----CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEE
Q 016457 121 TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN-----KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTF 195 (389)
Q Consensus 121 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (389)
... .+. ++.+++++... .++.|.+.|.++ .+.+..+. -......+.++|+|+..++++..+.+|.++
T Consensus 277 ni~--~ie--a~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 277 NIA--RIE--EAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred chH--HHH--HhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 211 011 22335666555 357899999998 34555554 567788999999998666667779999999
Q ss_pred ecCCCCCC-------CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC----------ceeEEeecccc
Q 016457 196 DTGGDIND-------DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG----------QNVASFENARS 258 (389)
Q Consensus 196 d~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~ 258 (389)
|+.+.... ...+.............+|. .++....+..-|..|..||+... ..+..+.-+
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFD-g~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~-- 425 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFD-GRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVH-- 425 (635)
T ss_pred EChhhhhhhhccCCccceEEEeeccCCCcceEEEC-CCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCC--
Confidence 99854310 01111112223344567887 66778888888999999998752 222222221
Q ss_pred cccCCccCCCCCceeeecccCCCCeEEEEEec
Q 016457 259 LASDSWTLDDVDYFVDCHYPGEGENLWVIGGT 290 (389)
Q Consensus 259 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~ 290 (389)
...+|......=.-.|+|+ ||++..
T Consensus 426 -----y~pgh~~~~~g~t~~~dgk--~l~~~n 450 (635)
T PRK02888 426 -----YQPGHNHASMGETKEADGK--WLVSLN 450 (635)
T ss_pred -----CccceeeecCCCcCCCCCC--EEEEcc
Confidence 1122444444445577888 777763
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.41 E-value=9e-05 Score=65.51 Aligned_cols=115 Identities=12% Similarity=0.097 Sum_probs=81.3
Q ss_pred CCeEEEEEeCCCC-eEEEeec----CCe----EEEEECcCCce--eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEE
Q 016457 125 QEIFCFSFGGSTD-YLLAAGC----GSQ----IQFWDWRNKKQ--VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193 (389)
Q Consensus 125 ~~v~~~~~~~~~~-~l~~~~~----d~~----i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 193 (389)
....++.|+-..+ .+.+... +|. -.+|++..++. +....-..+..+.|.+++|+.. .++.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEE
Confidence 4446777775443 3444322 332 35566654432 2222224788999999999996 999999999999
Q ss_pred EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457 194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG 247 (389)
Q Consensus 194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 247 (389)
+||...+ +.......-.++.++|+ +++.++++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~------~t~~~ka~~~P~~iaWH-p~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRG------VTLLAKAEFIPTLIAWH-PDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCC------eeeeeeecccceEEEEc-CCCcEEEEEcCCceEEEEEeecC
Confidence 9999844 33344455677899999 78899999999999999998643
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.36 E-value=0.0012 Score=57.07 Aligned_cols=176 Identities=12% Similarity=0.100 Sum_probs=106.5
Q ss_pred CeEEEEeCCCceeeeeecC-CCCcEEEEE---EeCCC--CCCEEEEEec----------CCeEEEEEccCC----eEEEE
Q 016457 60 NVVKLYSPVTGQYSGECKG-HSSTVNQIS---FSGPS--TPHVLHSCSS----------DGTIRAWDTRSF----HEVWS 119 (389)
Q Consensus 60 ~~i~iw~~~~~~~~~~~~~-~~~~v~~i~---~~~~~--~~~~l~s~~~----------dg~i~iwd~~~~----~~~~~ 119 (389)
..|++.|..+.+.+..+.- ..+.+.+++ +..+. ...+|+.|.. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3588888887776655432 233444444 33221 1257887764 288999999884 22222
Q ss_pred EE--cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457 120 VT--AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196 (389)
Q Consensus 120 ~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 196 (389)
+. ..+++|++++-- +++++++. ++.|.+|++...+ ....-.......++++... + ++++.|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCEEEEE
Confidence 21 126889999876 44544444 4899999999877 4333321233356666655 4 4899999888899886
Q ss_pred cCCCCCCCccceee--eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457 197 TGGDINDDDLLESV--INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK 245 (389)
Q Consensus 197 ~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 245 (389)
.+.. ...+..+ ......+.++.+.+ +++.++++..+|.+.++...
T Consensus 156 ~~~~---~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 156 YDEE---NNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EETT---TE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-
T ss_pred EEcc---CCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEEC
Confidence 6521 1112222 22345688888873 44689999999999999876
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.28 E-value=1.9e-05 Score=69.57 Aligned_cols=116 Identities=10% Similarity=0.003 Sum_probs=81.4
Q ss_pred CcceEEEeecC-CCCeEEEEe----cCCe----EEEEeCCCceee----eeecCCCCcEEEEEEeCCCCCCEEEEEecCC
Q 016457 38 DDYVFEIVPKN-DWSLMAVSL----STNV----VKLYSPVTGQYS----GECKGHSSTVNQISFSGPSTPHVLHSCSSDG 104 (389)
Q Consensus 38 ~~~v~~~~~~~-~~~~l~~~~----~d~~----i~iw~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg 104 (389)
.....++.|+. +...+.+.. .+|. -.+|+...++.. .++ .....|.+++++|+. +.|+.|+.||
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E--~kLvlGC~Dg 281 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSE--DKLVLGCEDG 281 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCccc--ceEEEEecCC
Confidence 33446777775 333444332 2332 345666544322 122 367789999999999 7999999999
Q ss_pred eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce
Q 016457 105 TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ 158 (389)
Q Consensus 105 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 158 (389)
+|.+||...+..... ...-..+.++|+|++..+++++..|.+.+||+.-...
T Consensus 282 SiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 282 SIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred eEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 999999876643322 3346788999999999999999999999999875443
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.27 E-value=0.0029 Score=58.33 Aligned_cols=148 Identities=12% Similarity=0.090 Sum_probs=93.8
Q ss_pred CeEEEEecCCeEEEEeCCCceeeeeecC--CCC--cEEE-EEEeCCCCCCEEEEEe------cCCeEEEEEccCCeEEEE
Q 016457 51 SLMAVSLSTNVVKLYSPVTGQYSGECKG--HSS--TVNQ-ISFSGPSTPHVLHSCS------SDGTIRAWDTRSFHEVWS 119 (389)
Q Consensus 51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~~--~v~~-i~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~ 119 (389)
..++.++.++.+.-.|..+|+.+..... +.. .+.+ -... ++ .++.+. .+|.|..+|.++|+.+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g---~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG---KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC---EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 4677788899999999999998877642 111 1111 1111 33 455543 268999999999998877
Q ss_pred EEcCCC-------------------------------CeE-EEEEeCCCCeEEEeecC-----C-----------eEEEE
Q 016457 120 VTAGSQ-------------------------------EIF-CFSFGGSTDYLLAAGCG-----S-----------QIQFW 151 (389)
Q Consensus 120 ~~~~~~-------------------------------~v~-~~~~~~~~~~l~~~~~d-----~-----------~i~iw 151 (389)
+..-.. .++ .+++.|..+.++.+..+ + .|.-.
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 654211 111 34666666677666521 2 67888
Q ss_pred ECcCCceeeeeeecccC--------CeeEEEEecCCC--CeEEEEeCCCcEEEEecCCCCC
Q 016457 152 DWRNKKQVACLEESHVE--------DVTQVHFVPNNQ--NKVVSASVDGLICTFDTGGDIN 202 (389)
Q Consensus 152 d~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~ 202 (389)
|+++++....++..|.+ ...-+.+..+|+ ..++.+..+|.+++.|.++++.
T Consensus 277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 99999998777622211 111122223442 3788999999999999998753
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.27 E-value=2.2e-05 Score=70.40 Aligned_cols=162 Identities=11% Similarity=0.114 Sum_probs=106.7
Q ss_pred CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE-cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457 79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK 157 (389)
Q Consensus 79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 157 (389)
+...|.--++...+ ++++.|+.-|.+.+|+-..++....-. +....+..+..++.+..+++++..|.|.++-+....
T Consensus 32 ~~~~v~lTc~dst~--~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATE--EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCC--ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 33444444555555 799999999999999966554433222 234555666677666666667778999999887643
Q ss_pred e-----eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEE
Q 016457 158 Q-----VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWC 232 (389)
Q Consensus 158 ~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 232 (389)
+ +......|+..|++++|++++. .+++|...|.|..-.+.+..........+....+.|..+.+. . .+|++
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q--~~LLV 185 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-Q--SYLLV 185 (726)
T ss_pred CCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-c--ceehH
Confidence 2 2222234778999999999996 999999999999988875211122344455567788888876 2 24555
Q ss_pred EecCCcEEEEEcCCC
Q 016457 233 LTHIETLSIWDWKDG 247 (389)
Q Consensus 233 ~~~d~~i~i~d~~~~ 247 (389)
++.-..+ +++++..
T Consensus 186 Stl~r~~-Lc~tE~e 199 (726)
T KOG3621|consen 186 STLTRCI-LCQTEAE 199 (726)
T ss_pred hhhhhhh-eeecchh
Confidence 5444444 5666543
No 349
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.26 E-value=0.00022 Score=49.13 Aligned_cols=100 Identities=12% Similarity=0.246 Sum_probs=72.4
Q ss_pred eEEEeecC---CC-CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457 41 VFEIVPKN---DW-SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116 (389)
Q Consensus 41 v~~~~~~~---~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 116 (389)
|++|++.. || +.|++|+.|..|++|+-+ +.+..+. ..+.|++++-...+ .++.+..+|+|-+|+- ...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~--~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR--SQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--cce
Confidence 56666543 43 689999999999999843 6667776 45678888877665 8999999999999975 455
Q ss_pred EEEEEcCCCCeEEEEEeCCCC----eEEEeecCCeEE
Q 016457 117 VWSVTAGSQEIFCFSFGGSTD----YLLAAGCGSQIQ 149 (389)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~~~----~l~~~~~d~~i~ 149 (389)
++.++. +..++++++..-+. .|+++-++|.|-
T Consensus 74 lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 566665 35577777653332 577777788774
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.26 E-value=0.0014 Score=56.64 Aligned_cols=213 Identities=12% Similarity=0.162 Sum_probs=125.1
Q ss_pred CeEEEEecC--ceeeeee--cCcceEEEee---cCC----CCeEEEEec---------C-CeEEEEeCCCc-----ee--
Q 016457 21 NSIKRFGLK--NSIQTNF--GDDYVFEIVP---KND----WSLMAVSLS---------T-NVVKLYSPVTG-----QY-- 72 (389)
Q Consensus 21 ~~i~~w~~~--~~~~~~~--~~~~v~~~~~---~~~----~~~l~~~~~---------d-~~i~iw~~~~~-----~~-- 72 (389)
..|++.|.. +.+..+. ....+.+++. ..+ ..+|++|+. . |.|.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 357788764 2333332 2666776653 332 468888865 2 88999999873 22
Q ss_pred eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe-EEEEEEc-CCCCeEEEEEeCCCCeEEEeecCCeEEE
Q 016457 73 SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH-EVWSVTA-GSQEIFCFSFGGSTDYLLAAGCGSQIQF 150 (389)
Q Consensus 73 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i 150 (389)
+... ...++|++++-. .+ .|+.+. .+.|.+|++...+ ....-.. ....+.++... +++++++.....+.+
T Consensus 82 i~~~-~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 82 IHST-EVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEE-EESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEE-eecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 2222 257889999877 44 444443 4789999998777 4433222 23467777764 668888888787777
Q ss_pred EECcC-Cceeeeee-ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC---Cc-cc--eeeeccCCceeeE--
Q 016457 151 WDWRN-KKQVACLE-ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND---DD-LL--ESVINVGTSVGKV-- 220 (389)
Q Consensus 151 wd~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~-~~--~~~~~~~~~i~~~-- 220 (389)
+..+. ...+..+. ......++++.+-+++. .++.+..+|.+.++........ .. .+ ......+..|+++
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~ 232 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRR 232 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEE
Confidence 75443 22232222 23456688999997774 9999999999999988732111 11 11 2223345667777
Q ss_pred -EEecC--CC-----cEEEEEecCCcEEEE
Q 016457 221 -GFFGE--TN-----KHLWCLTHIETLSIW 242 (389)
Q Consensus 221 -~~~~~--~~-----~~l~~~~~d~~i~i~ 242 (389)
.+.|. +. ..++.++.+|.|...
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 44331 11 247888888988744
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.0029 Score=55.90 Aligned_cols=251 Identities=15% Similarity=0.112 Sum_probs=160.1
Q ss_pred CcceEEEeecCCCCeEEEEec-CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLS-TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 116 (389)
......+...+++..+.+... ...+...+............-...-..++.++.+. +.++....++.|.+.|..+.+.
T Consensus 30 ~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~-~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 30 GRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN-KVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC-eEEEecCCCCeEEEEcCcccce
Confidence 345667788888865554443 22455555442222221111113345677887773 4666666678999999888887
Q ss_pred EEEEEcCCCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEE
Q 016457 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193 (389)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 193 (389)
....... .....++++|+++.+.++.. ++.+.+.|..+++...... .-..+ ..+++.|++...+++-..++.|.
T Consensus 109 ~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P-~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 109 LGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTP-TGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred eeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence 7777654 36778999999989888776 6899999999998888855 22234 89999999963455555789999
Q ss_pred EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccCCccCCCCC
Q 016457 194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVD 270 (389)
Q Consensus 194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (389)
++|..+....................+.+. +++..+.+.... +.+...|..++.....-.... ..
T Consensus 186 vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~-~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~----------~~- 253 (381)
T COG3391 186 VIDTSGNSVVRGSVGSLVGVGTGPAGIAVD-PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG----------SG- 253 (381)
T ss_pred EEeCCCcceeccccccccccCCCCceEEEC-CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc----------cC-
Confidence 999774321100000012233445677787 566655444443 588899988877666522211 11
Q ss_pred ceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
....+.++|+|...|++. +..+.+.+.|..+...
T Consensus 254 ~~~~v~~~p~g~~~yv~~-~~~~~V~vid~~~~~v 287 (381)
T COG3391 254 APRGVAVDPAGKAAYVAN-SQGGTVSVIDGATDRV 287 (381)
T ss_pred CCCceeECCCCCEEEEEe-cCCCeEEEEeCCCCce
Confidence 456788999999544433 3457889988887654
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.24 E-value=0.0017 Score=57.81 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=108.2
Q ss_pred EEeecCCCCeEEEEecC----------C-eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457 43 EIVPKNDWSLMAVSLST----------N-VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111 (389)
Q Consensus 43 ~~~~~~~~~~l~~~~~d----------~-~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~ 111 (389)
.++.+|.|..+|...++ . .|.||+.. |+++.++.-..+.|.++.|+.+. .|+....||.++++|+
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e---~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE---ELVVVQSDGTVRVYDL 108 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC---eEEEEEcCCEEEEEeC
Confidence 34556666666666433 1 59999965 77777655444899999998754 6778889999999998
Q ss_pred cCCeEEEEEE-------cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeeeeee--c-----ccC-CeeE-EE
Q 016457 112 RSFHEVWSVT-------AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVACLEE--S-----HVE-DVTQ-VH 174 (389)
Q Consensus 112 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~--~-----~~~-~v~~-~~ 174 (389)
. |+....+. .....+....+. .++.++. ..++.+.+..--... ....+.. . +.. .... ..
T Consensus 109 ~-G~~~fsl~~~i~~~~v~e~~i~~~~~~-~~GivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 109 F-GEFQFSLGEEIEEEKVLECRIFAIWFY-KNGIVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred C-CceeechhhhccccCcccccccccccC-CCCEEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence 6 33311111 111122222332 2333333 334554444322211 1111110 0 000 1111 23
Q ss_pred EecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457 175 FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE 254 (389)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 254 (389)
++.+.. ..+....++.+.+.+-... .. ....+++..++.+ +++++++.-..+|.+.+.+..-.+.+..+.
T Consensus 186 l~~~~~-~~i~~~~g~~i~~i~~~~~-------~~-i~~~~~i~~iavS-png~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 186 LSSDRV-VEILLANGETIYIIDENSF-------KQ-IDSDGPIIKIAVS-PNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred eecCcc-eEEEEecCCEEEEEEcccc-------cc-ccCCCCeEEEEEC-CCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 444443 4445555566665544411 11 2234689999999 788899999999999888865555555554
Q ss_pred c
Q 016457 255 N 255 (389)
Q Consensus 255 ~ 255 (389)
.
T Consensus 256 ~ 256 (410)
T PF04841_consen 256 T 256 (410)
T ss_pred c
Confidence 3
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.23 E-value=0.0019 Score=56.60 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=131.0
Q ss_pred CCCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee-cC-------C---------
Q 016457 19 NVNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-KG-------H--------- 79 (389)
Q Consensus 19 ~~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~-------~--------- 79 (389)
..+.+.++|+.+ ....+.. ...+....|+|+|+.+|... ++.|.+++..+++..+.- .+ -
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred cceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 346778888875 3344433 56788999999999999887 788999998777444321 11 0
Q ss_pred CCcEEEEEEeCCCCCCEEEEEecC-CeEEEE-----------------------------------EccCCeEEE-EEE-
Q 016457 80 SSTVNQISFSGPSTPHVLHSCSSD-GTIRAW-----------------------------------DTRSFHEVW-SVT- 121 (389)
Q Consensus 80 ~~~v~~i~~~~~~~~~~l~s~~~d-g~i~iw-----------------------------------d~~~~~~~~-~~~- 121 (389)
-+.-.++-|+|++ ++|+....| ..|..+ |+.+++... ...
T Consensus 100 ~~~~~~~~WSpd~--~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 100 FDRRSAVWWSPDS--KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp SSSSBSEEE-TTS--SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H
T ss_pred cccccceEECCCC--CEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc
Confidence 1223568899999 566664432 333333 222222110 000
Q ss_pred ---cCCCCeEEEEEeCCCCeEEEeec--C---CeEEEEECcCCceeeeeeecccCC---eeEEEEe-cCCCCeEEEEeCC
Q 016457 122 ---AGSQEIFCFSFGGSTDYLLAAGC--G---SQIQFWDWRNKKQVACLEESHVED---VTQVHFV-PNNQNKVVSASVD 189 (389)
Q Consensus 122 ---~~~~~v~~~~~~~~~~~l~~~~~--d---~~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~~-~~~~~~l~~~~~d 189 (389)
.....+..+.|.+++..+++.-. + -.+.+.|..++.....+....... -....+. +++..++.....+
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 11344667888877764555433 1 256667777665543333222222 2355665 6665466666677
Q ss_pred CcEEEE--ecCCCCCCCccceeeeccCCceee-EEEecCCCcEEEEEecCC----cEEEEEcCCCceeEEeecccccccC
Q 016457 190 GLICTF--DTGGDINDDDLLESVINVGTSVGK-VGFFGETNKHLWCLTHIE----TLSIWDWKDGQNVASFENARSLASD 262 (389)
Q Consensus 190 ~~i~i~--d~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~ 262 (389)
|.-++| +..++ ....+....-.|.. +.+.+.++.+.+++..++ .|..-++..+..+..+....
T Consensus 258 G~~hly~~~~~~~-----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~----- 327 (353)
T PF00930_consen 258 GYRHLYLYDLDGG-----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED----- 327 (353)
T ss_dssp SSEEEEEEETTSS-----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-----
T ss_pred CCcEEEEEccccc-----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-----
Confidence 765554 44432 23344445556655 556644455556666533 55555555233444444321
Q ss_pred CccCCCCCceeeecccCCCCe
Q 016457 263 SWTLDDVDYFVDCHYPGEGEN 283 (389)
Q Consensus 263 ~~~~~~~~~i~~~~~~~~~~~ 283 (389)
.....+.|||+++.
T Consensus 328 -------~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 328 -------GDHYSASFSPDGKY 341 (353)
T ss_dssp -------STTEEEEE-TTSSE
T ss_pred -------CCceEEEECCCCCE
Confidence 11158999999983
No 354
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.21 E-value=0.00028 Score=66.42 Aligned_cols=135 Identities=17% Similarity=0.176 Sum_probs=95.7
Q ss_pred cCCeEEEEeCCCceeeeeecCCCCc-EEEEEEeCCCC-----CCEEEEEecCCeEEEEEccCCe--EEEE-EE--cCCCC
Q 016457 58 STNVVKLYSPVTGQYSGECKGHSST-VNQISFSGPST-----PHVLHSCSSDGTIRAWDTRSFH--EVWS-VT--AGSQE 126 (389)
Q Consensus 58 ~d~~i~iw~~~~~~~~~~~~~~~~~-v~~i~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~--~~~~-~~--~~~~~ 126 (389)
....|+-.|++.|+.+..+..|... |..++ |+.. +...+.|-.++.+..||.+-.. .+.. .+ .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 4578999999999999999887654 55443 4320 1356667778889999998532 2211 11 12567
Q ss_pred eEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457 127 IFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG 198 (389)
Q Consensus 127 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (389)
.+|++-. .++++++|+.+|.|++|| +.+....+.-.+-+.+|..|..+.+|+ ++++.+ +..+.+++..
T Consensus 580 Fs~~aTt-~~G~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGk-wilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 580 FSCFATT-EDGYIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGK-WILATC-KTYLLLIDTL 647 (794)
T ss_pred ceEEEec-CCceEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCc-EEEEee-cceEEEEEEe
Confidence 8888877 778999999999999999 444444443337789999999999997 555544 5677787763
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.20 E-value=0.0029 Score=56.48 Aligned_cols=223 Identities=11% Similarity=0.100 Sum_probs=110.1
Q ss_pred CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce
Q 016457 79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ 158 (389)
Q Consensus 79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 158 (389)
..-....+.++|++ ++++. +.||.-.|+.....+.... +.-...+|.+ .+.+++-...+.|.++.--+.+.
T Consensus 31 ~~~~p~~ls~npng--r~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNG--RFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEEEE-TTS--SEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-T
T ss_pred CCcCCeeEEECCCC--CEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEec-CccEEEEECCCeEEEEEcCcccc
Confidence 34457889999999 56666 6688888888544444322 3345678885 56677766688999973223333
Q ss_pred eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCc
Q 016457 159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIET 238 (389)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 238 (389)
...+. ....+..|-. |. +|...+ ++.|.+||+.++ ..+.++... +|..+.|+ +++++++..+.+ .
T Consensus 102 ~k~i~--~~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~----~~i~~i~v~--~vk~V~Ws-~~g~~val~t~~-~ 166 (443)
T PF04053_consen 102 VKSIK--LPFSVEKIFG---GN-LLGVKS-SDFICFYDWETG----KLIRRIDVS--AVKYVIWS-DDGELVALVTKD-S 166 (443)
T ss_dssp T-------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT------EEEEESS---E-EEEEE--TTSSEEEEE-S--S
T ss_pred ceEEc--CCcccceEEc---Cc-EEEEEC-CCCEEEEEhhHc----ceeeEEecC--CCcEEEEE-CCCCEEEEEeCC-e
Confidence 33444 1223444433 64 666665 448999999954 344444322 48999999 778888888765 6
Q ss_pred EEEEEcCCC-----------ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc
Q 016457 239 LSIWDWKDG-----------QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT 307 (389)
Q Consensus 239 i~i~d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~ 307 (389)
+.+++.... ..+..+.. -...|.+.+|..+ .++.+... .|+. +..|+
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~~E------------~~~~IkSg~W~~d---~fiYtT~~--~lkY--l~~Ge--- 224 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELIHE------------ISERIKSGCWVED---CFIYTTSN--HLKY--LVNGE--- 224 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEEEE------------E-S--SEEEEETT---EEEEE-TT--EEEE--EETTE---
T ss_pred EEEEEecchhcccccccCchhceEEEEE------------ecceeEEEEEEcC---EEEEEcCC--eEEE--EEcCC---
Confidence 667765422 02222221 1256777777765 24444433 4554 33332
Q ss_pred cCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 308 IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 308 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
.+.|..+- .+..-+.+.++...++....|+.|..+.++..
T Consensus 225 ------------~~~i~~ld--~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 225 ------------TGIIAHLD--KPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ------------EEEEEE-S--S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred ------------cceEEEcC--CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 22222221 01111155565566788889999999988855
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.20 E-value=0.0027 Score=53.57 Aligned_cols=224 Identities=15% Similarity=0.216 Sum_probs=127.5
Q ss_pred CCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE-------
Q 016457 48 NDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV------- 120 (389)
Q Consensus 48 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------- 120 (389)
..++.|+.|+.+| +.+++........... +...|..+...++- +.|++-+ |+.+.++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~--~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPEL--NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEeccc--CEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 4567899999888 9999983332222222 23349999999877 4555554 599999998754433311
Q ss_pred ------E-cCCCCeEEEE--EeCCCCeEEEeecCCeEEEEECcCC-----ceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457 121 ------T-AGSQEIFCFS--FGGSTDYLLAAGCGSQIQFWDWRNK-----KQVACLEESHVEDVTQVHFVPNNQNKVVSA 186 (389)
Q Consensus 121 ------~-~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 186 (389)
. .....+...+ -.+.+...++......|.+|..... +....+. -...+.+++|.+ +.++.|
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~---~~i~v~ 154 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLG---NKICVG 154 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeC---CEEEEE
Confidence 1 1123444444 2234556666666679999887653 3455554 567899999994 367777
Q ss_pred eCCCcEEEEecCCCCCCCccceeee----------ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecc
Q 016457 187 SVDGLICTFDTGGDINDDDLLESVI----------NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENA 256 (389)
Q Consensus 187 ~~d~~i~i~d~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 256 (389)
..+ ...+.|+.++.. ..+.... ....++..+.. +++.+|++. +. +-+|=-..|+..+..
T Consensus 155 ~~~-~f~~idl~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~Ll~~--~~-~g~fv~~~G~~~r~~--- 223 (275)
T PF00780_consen 155 TSK-GFYLIDLNTGSP--SELLDPSDSSSSFKSRNSSSKPLGIFQL--SDNEFLLCY--DN-IGVFVNKNGEPSRKS--- 223 (275)
T ss_pred eCC-ceEEEecCCCCc--eEEeCccCCcchhhhcccCCCceEEEEe--CCceEEEEe--cc-eEEEEcCCCCcCccc---
Confidence 644 478889985431 1111110 01123333333 334555543 22 333333345433310
Q ss_pred cccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 257 RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
...|. .....+++.. . ||++-..+ .|.||++.++++
T Consensus 224 ----~i~W~----~~p~~~~~~~--p--yli~~~~~-~iEV~~~~~~~l 259 (275)
T PF00780_consen 224 ----TIQWS----SAPQSVAYSS--P--YLIAFSSN-SIEVRSLETGEL 259 (275)
T ss_pred ----EEEcC----CchhEEEEEC--C--EEEEECCC-EEEEEECcCCcE
Confidence 01121 3445555543 3 77776554 499999999876
No 357
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.00044 Score=61.36 Aligned_cols=174 Identities=14% Similarity=0.119 Sum_probs=100.7
Q ss_pred EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec---C-CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCC
Q 016457 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC---G-SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN 181 (389)
Q Consensus 106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 181 (389)
+.+-|.. +.....+......+..-+|+|++..++.... . ..+.++|+.+++....+. ....-..-+|+|+|+.
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~ 251 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSK 251 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCE
Confidence 3343433 4445555555667777889988887666543 2 469999999887665554 3444556789999986
Q ss_pred eEEEEeCCCc--EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEE-EEecCC--cEEEEEcCCCceeEEeecc
Q 016457 182 KVVSASVDGL--ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLW-CLTHIE--TLSIWDWKDGQNVASFENA 256 (389)
Q Consensus 182 ~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~ 256 (389)
++++...||. |+++|+.++. ...+......-..=.|+ ++|+.++ +.+..| .|.+++...... ..+...
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~-----~~~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~ 324 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN-----LPRLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS 324 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc-----ceecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc
Confidence 7777777776 6666776542 22222222222355677 5666555 444455 566666665544 222221
Q ss_pred cccccCCccCCCCCceeeecccCCCCeEEEEEecCCce--EEEEEecc
Q 016457 257 RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT--VGYFPVNY 302 (389)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~--i~i~~~~~ 302 (389)
...-..-.|+|+|+.+.+ ....+|. |.+.++.+
T Consensus 325 ------------~~~~~~p~~SpdG~~i~~-~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 325 ------------GGGNSNPVWSPDGDKIVF-ESSSGGQWDIDKNDLAS 359 (425)
T ss_pred ------------CCCCcCccCCCCCCEEEE-EeccCCceeeEEeccCC
Confidence 122226789999995433 3333454 44444443
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.00082 Score=59.68 Aligned_cols=199 Identities=13% Similarity=0.067 Sum_probs=116.9
Q ss_pred eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe---cC-CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC
Q 016457 61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS---SD-GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136 (389)
Q Consensus 61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 136 (389)
.+.+-|.+ |.....+......+..-+|+|++. .++... .. ..+.++++.+++....+.. ...-..-+|+|++
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~--~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P~fspDG 249 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGK--KLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAPAFSPDG 249 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCC--ceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCccCCCCC
Confidence 34444433 444445544556677788999984 433321 22 3589999998876555553 3445567899999
Q ss_pred CeEEEeec-CC--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc--EEEEecCCCCCCCccceeee
Q 016457 137 DYLLAAGC-GS--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL--ICTFDTGGDINDDDLLESVI 211 (389)
Q Consensus 137 ~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~ 211 (389)
..++.+.. || .|.+.|+..+.. ..+. ...+.-+.-.|+|+|+.++++.+..|. |.++|..+.. ...+.
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-----~~riT 322 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNL-PRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-----VTRLT 322 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcc-eecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-----eeEee
Confidence 99888776 55 577778877663 3354 222333367899999856666666666 5555555332 22222
Q ss_pred ccCCceeeEEEecCCCcEEEEEec-CCc--EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeE
Q 016457 212 NVGTSVGKVGFFGETNKHLWCLTH-IET--LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENL 284 (389)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 284 (389)
.....-..-.|+ +++++++..+. +|. |.+.|+.++...+.+.. ......-.|.+++..+
T Consensus 323 ~~~~~~~~p~~S-pdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~-------------~~~~e~ps~~~ng~~i 384 (425)
T COG0823 323 FSGGGNSNPVWS-PDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS-------------TYLNESPSWAPNGRMI 384 (425)
T ss_pred ccCCCCcCccCC-CCCCEEEEEeccCCceeeEEeccCCCCcEEEccc-------------cccCCCCCcCCCCceE
Confidence 222222255677 67777766654 344 66677666554444332 2333455677887743
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.19 E-value=0.003 Score=56.23 Aligned_cols=174 Identities=13% Similarity=0.097 Sum_probs=90.3
Q ss_pred eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-ecccCC-----eeEEEEecC
Q 016457 105 TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESHVED-----VTQVHFVPN 178 (389)
Q Consensus 105 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~-----v~~~~~~~~ 178 (389)
.|+||+. .|+.+.++.-..+.|.++.|+ .+..|++...||.+++||+. |+....+. ...... +....+...
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt-~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWT-DDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEEC-CCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence 4888885 467777766656899999999 57788888899999999986 33311111 001111 222233334
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC------Cceee-EEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457 179 NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG------TSVGK-VGFFGETNKHLWCLTHIETLSIWDWKDGQNVA 251 (389)
Q Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~------~~i~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 251 (389)
| ++.-..++.+.+..-................. ..... ..+. .+....+....++.+.+.+....+.
T Consensus 139 G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 139 G---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS-SDRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred C---EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee-cCcceEEEEecCCEEEEEEcccccc--
Confidence 4 23333455555443321100000000110000 01111 1222 2233333334444454333221111
Q ss_pred EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457 252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG 303 (389)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~ 303 (389)
+. ..+++..+++||+++ +||.-..+|.+.+.+.+-.
T Consensus 213 -i~-------------~~~~i~~iavSpng~--~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 213 -ID-------------SDGPIIKIAVSPNGK--FIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred -cc-------------CCCCeEEEEECCCCC--EEEEEECCCCEEEEECccc
Confidence 11 226799999999999 7788888899988875543
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.10 E-value=0.0081 Score=55.43 Aligned_cols=193 Identities=13% Similarity=0.047 Sum_probs=114.1
Q ss_pred CCeEEEEecCCeEEEEeCCCceeeeeecCCC-CcEE----------EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457 50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHS-STVN----------QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW 118 (389)
Q Consensus 50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~----------~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 118 (389)
+..|++++.++.|.-+|..+|+.+..+.... ..+. .+++. + ..++.++.|+.|.-.|..+|+.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~---~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-D---GKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-C---CEEEEEcCCCEEEEEECCCCCEEe
Confidence 4477777778899999999999888765311 1111 12222 2 367778889999999999999998
Q ss_pred EEEcCC----CCeEE-EEEeCCCCeEEEeec------CCeEEEEECcCCceeeeeeecccC-------------------
Q 016457 119 SVTAGS----QEIFC-FSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACLEESHVE------------------- 168 (389)
Q Consensus 119 ~~~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~------------------- 168 (389)
...... ..+++ -.. .++.++++.. +|.|..+|.++++.+.++......
T Consensus 145 ~~~~~~~~~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred ecccccccccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 765421 11211 112 2446666543 689999999999987665411110
Q ss_pred -----------Ce-eEEEEecCCCCeEEEEeCC-----C-----------cEEEEecCCCCCCCccceeeeccCC-----
Q 016457 169 -----------DV-TQVHFVPNNQNKVVSASVD-----G-----------LICTFDTGGDINDDDLLESVINVGT----- 215 (389)
Q Consensus 169 -----------~v-~~~~~~~~~~~~l~~~~~d-----~-----------~i~i~d~~~~~~~~~~~~~~~~~~~----- 215 (389)
.+ ..+++.|+.. ++..+..+ + .|.-.|+++++.. -..+...|..
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~--W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK--WHYQTTPHDEWDYDG 299 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE--EeeeCCCCCCccccC
Confidence 01 1346666653 66665522 1 4555666665311 1111111211
Q ss_pred ceeeEEEe-cCCCc---EEEEEecCCcEEEEEcCCCceeE
Q 016457 216 SVGKVGFF-GETNK---HLWCLTHIETLSIWDWKDGQNVA 251 (389)
Q Consensus 216 ~i~~~~~~-~~~~~---~l~~~~~d~~i~i~d~~~~~~~~ 251 (389)
.-..+.+. +.+++ .++.+..+|.+++.|..+++.+.
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 01111111 13443 78899999999999999998863
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.02 E-value=0.0009 Score=46.16 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=73.2
Q ss_pred EEEEEEeC---CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee
Q 016457 83 VNQISFSG---PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV 159 (389)
Q Consensus 83 v~~i~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 159 (389)
|+++++.. ++. +.|+.|+.|..||+|+- .+.+..+... +.|++++-. ....++.+-.+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~-~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~-~~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGE-NELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSL-GGGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCc-ceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEc-CCCEEEEEecCCEEEEEeC--ccee
Confidence 56666654 443 68999999999999984 4677777764 788888877 4578888888999999984 4445
Q ss_pred eeeeecccCCeeEEEEec---CCCCeEEEEeCCCcEE
Q 016457 160 ACLEESHVEDVTQVHFVP---NNQNKVVSASVDGLIC 193 (389)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~ 193 (389)
..++ .+..++++.+.. +|...|++|-.+|.|-
T Consensus 75 WRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5555 334466666543 3333799998888874
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.7e-05 Score=68.18 Aligned_cols=93 Identities=15% Similarity=-0.004 Sum_probs=79.8
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEE-EEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVN-QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 116 (389)
.-.|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|+| +.|+.|-.||+|++.|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DG--kllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDG--KLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCC--CEEEEEecCCeEEEEEccCCCc
Confidence 5567889999999999999999999999987 777888887777787 99999999 8999999999999999999888
Q ss_pred EEEEEc-CCCCeEEEEEe
Q 016457 117 VWSVTA-GSQEIFCFSFG 133 (389)
Q Consensus 117 ~~~~~~-~~~~v~~~~~~ 133 (389)
+..+.. ....|.++.|.
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 776322 25678888885
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.9e-05 Score=67.45 Aligned_cols=95 Identities=8% Similarity=0.198 Sum_probs=80.9
Q ss_pred CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeE-EEEEeCCCCeEEEeecCCeEEEEECcCCce
Q 016457 80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIF-CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ 158 (389)
Q Consensus 80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 158 (389)
...|.-+.|+|.- +++|++..+|.|.+..+. .+.+.++..+...++ +++|.|+|+.++++-.||+|++.|+.++..
T Consensus 20 ~~~i~~~ewnP~~--dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKM--DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCcc--chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 3567889999998 799999999999999988 888899997777777 999999998888888899999999999988
Q ss_pred eeeeeecccCCeeEEEEec
Q 016457 159 VACLEESHVEDVTQVHFVP 177 (389)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~ 177 (389)
+......-...|.++-|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 8773323556788888874
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.01 Score=52.47 Aligned_cols=266 Identities=11% Similarity=0.076 Sum_probs=156.5
Q ss_pred EEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEE
Q 016457 62 VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLA 141 (389)
Q Consensus 62 i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 141 (389)
+.+++..+.+....+..+. ....+...+.+. +..++-.....+...+................-..++.++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~-~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGT-QVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccC-EEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 5566655554444444332 455677777774 23333333335555555422222212221234557788888887777
Q ss_pred eec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe--CCCcEEEEecCCCCCCCccceeeeccCCcee
Q 016457 142 AGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS--VDGLICTFDTGGDINDDDLLESVINVGTSVG 218 (389)
Q Consensus 142 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 218 (389)
... ++.|.+.|..+.+.......+ .....++++|+++...++-. .++.+.+.|..+. ........-..+ .
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~----~~~~~~~vG~~P-~ 163 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN----KVTATIPVGNTP-T 163 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCC----eEEEEEecCCCc-c
Confidence 665 699999998888887777633 36788999999974444444 3688888888854 233332222234 8
Q ss_pred eEEEecCCCcEE-EEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC-CceEE
Q 016457 219 KVGFFGETNKHL-WCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG-AGTVG 296 (389)
Q Consensus 219 ~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~-dg~i~ 296 (389)
.+++. +++..+ ++-..++.|.++|........ -...... .-......+.++++|+++|++-... ++.+.
T Consensus 164 ~~a~~-p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~-------~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 164 GVAVD-PDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLV-------GVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred eEEEC-CCCCeEEEEecCCCeEEEEeCCCcceec-ccccccc-------ccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 89998 566644 444578899999976655543 1100000 0224456788999999766554433 37888
Q ss_pred EEEeccCCccccCCCeEE-EecccceeeeeccCCCcccCCCCCCCceeEEEec-CCCeEEEEeccCC
Q 016457 297 YFPVNYGGAATIGPPEAV-LVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG-EDGRLCCWLSDDS 361 (389)
Q Consensus 297 i~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iW~~~~~ 361 (389)
..|..++.. ... ...+-. ....+ .++|+|+++.+.. ..+.|.+-+....
T Consensus 235 ~id~~~~~v------~~~~~~~~~~-~~~~v---------~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 235 KIDTATGNV------TATDLPVGSG-APRGV---------AVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred EEeCCCceE------EEeccccccC-CCCce---------eECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 888887654 111 110110 12233 7788888877773 3366766666543
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.0083 Score=50.82 Aligned_cols=225 Identities=10% Similarity=0.046 Sum_probs=129.9
Q ss_pred eecCCCC-eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC
Q 016457 45 VPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG 123 (389)
Q Consensus 45 ~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 123 (389)
.|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++.....+ ..|+++. .| +.+++.+++..+..+...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~--g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAG--GRLIACE-HG-VRLLDPDTGGKITLLAEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCC--CeEEEEc-cc-cEEEeccCCceeEEeccc
Confidence 4777776 4445555788999998766432 222 22334444444343 3555553 33 677777655553333221
Q ss_pred -----CCCeEEEEEeCCCCeEEEeec-----------CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457 124 -----SQEIFCFSFGGSTDYLLAAGC-----------GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS 187 (389)
Q Consensus 124 -----~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 187 (389)
....+.+...|++...+.... -|.|+.+|. .+..+..+. .+-..-+.|+|+|+++.++++=+
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECCCCCEEEEEeC
Confidence 245567778877666555433 133444443 455555544 44556688999999974555556
Q ss_pred CCCcEEEEecCC--CCCCCcc-ceeeeccCCceeeEEEecCCCcEEEEEecCC-cEEEEEcCCCceeEEeecccccccCC
Q 016457 188 VDGLICTFDTGG--DINDDDL-LESVINVGTSVGKVGFFGETNKHLWCLTHIE-TLSIWDWKDGQNVASFENARSLASDS 263 (389)
Q Consensus 188 ~d~~i~i~d~~~--~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~ 263 (389)
..+.|.-|++.. +...... ........+..-.++.. .++.+.+++..+| .|.+|+.. ++.+..+....
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~------ 254 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV------ 254 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCC-CcEEEEEECCC------
Confidence 668899888862 1111111 11121234556677776 5666554444444 99999988 88888887632
Q ss_pred ccCCCCCceeeecccC-CCCeEEEEEecC
Q 016457 264 WTLDDVDYFVDCHYPG-EGENLWVIGGTG 291 (389)
Q Consensus 264 ~~~~~~~~i~~~~~~~-~~~~~~l~~g~~ 291 (389)
..+.+++|-- +.+.+|+.+...
T Consensus 255 ------~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 255 ------KRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ------CCCccceEeCCCcCEEEEEecCC
Confidence 5567777754 455555544444
No 366
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=1.4e-05 Score=61.98 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=65.9
Q ss_pred CeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCc
Q 016457 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTS 216 (389)
Q Consensus 137 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 216 (389)
..+.+.+.+|.|.-++++..+.-..-...+. +..--+.....+++|+.+|.|++|...-. .............
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~----e~~~v~~~~~~~~vG~~dg~v~~~n~n~~---g~~~d~~~s~~e~ 103 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSERFID----EGQRVVTASAKLMVGTSDGAVYVFNWNLE---GAHSDRVCSGEES 103 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhhhhhh----cceeecccCceEEeecccceEEEecCCcc---chHHHhhhccccc
Confidence 3466677789998888875433211110122 22111222247999999999999998821 1112222222233
Q ss_pred eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457 217 VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN 255 (389)
Q Consensus 217 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 255 (389)
|..+.-...++.+.++++.+|.|+.|++.-.+.+.....
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeeecc
Confidence 333333325566899999999999999987776655443
No 367
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.92 E-value=1.4e-05 Score=61.98 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=83.9
Q ss_pred eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE-Eeecccccc
Q 016457 182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA-SFENARSLA 260 (389)
Q Consensus 182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~ 260 (389)
.+...+.+|.|.-++++..+ ...+...-+... ..+ +.-+..+++|+.+|.|++|+........ .+...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k---~s~rse~~~~e~-~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---- 100 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHK---ESCRSERFIDEG-QRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---- 100 (238)
T ss_pred hhccccCCcccccchhhhhh---hhhhhhhhhhcc-eee---cccCceEEeecccceEEEecCCccchHHHhhhcc----
Confidence 45556678999988888321 111111111111 111 1334579999999999999876221111 11110
Q ss_pred cCCccCCCCCcee-eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc-eeeeeccCCCcccCCCCC
Q 016457 261 SDSWTLDDVDYFV-DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT-AVVRSVLPMPSVQGRPAQ 338 (389)
Q Consensus 261 ~~~~~~~~~~~i~-~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~s 338 (389)
. ..+. .+.--.++. +..++..||.|+.|++...+. +. ....|. .++... ..+
T Consensus 101 -------~-e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~------~g-~~g~h~~~~~e~~---------ivv 154 (238)
T KOG2444|consen 101 -------E-ESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKV------LG-YVGQHNFESGEEL---------IVV 154 (238)
T ss_pred -------c-ccceeccccccccc--eeEEeccCCceeeeccccCce------ee-eeccccCCCccee---------EEe
Confidence 0 1121 122222333 678999999999999987765 23 323555 444444 455
Q ss_pred CCceeEEEe--cCCCeEEEEeccCCcc
Q 016457 339 SHGIFGWTG--GEDGRLCCWLSDDSSE 363 (389)
Q Consensus 339 ~~~~~l~s~--~~dg~v~iW~~~~~~~ 363 (389)
..+++|+.+ |.|..++.|+++.-.+
T Consensus 155 ~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 155 GSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred cCCceEEeeccccchhhhhcchhhhhc
Confidence 666677777 8888889998886533
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.00031 Score=61.30 Aligned_cols=142 Identities=12% Similarity=0.145 Sum_probs=101.8
Q ss_pred eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCC-----EEEEEecCCeEEEEEccC-Ce-EEEEEEcC-
Q 016457 52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPH-----VLHSCSSDGTIRAWDTRS-FH-EVWSVTAG- 123 (389)
Q Consensus 52 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-----~l~s~~~dg~i~iwd~~~-~~-~~~~~~~~- 123 (389)
+|..+.....++-.|++.|+.+..+.-|.. |+-+.+.|+.... .-+.|-.|..|.-||.+- +. .+...++|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 344555566788889999999999987766 7778888876322 234456788899999873 22 23333333
Q ss_pred ---CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457 124 ---SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG 198 (389)
Q Consensus 124 ---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (389)
.....|.+-. .++++++++.+|.|++||- .+....+..++...+|..|..+.+|+ +|++.+ +..+.+.++.
T Consensus 427 y~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGK-wil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGK-WILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCc-EEEEec-ccEEEEEEEe
Confidence 4556677666 6789999999999999996 55555544448889999999999997 555444 6778887776
No 369
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.83 E-value=0.011 Score=48.08 Aligned_cols=204 Identities=10% Similarity=0.059 Sum_probs=120.2
Q ss_pred eeeeeecCCC--CcEEEEEEeCCCCCCEEEEEecCC--eEEEEEccCCeEEEEEEcCC-CCeEEEEEeCCCCeEEEeecC
Q 016457 71 QYSGECKGHS--STVNQISFSGPSTPHVLHSCSSDG--TIRAWDTRSFHEVWSVTAGS-QEIFCFSFGGSTDYLLAAGCG 145 (389)
Q Consensus 71 ~~~~~~~~~~--~~v~~i~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d 145 (389)
+.+.++. |. .-...+.|..++ .++-+.+.-| .|+.+|+.+++......... ---..++.. ++.....+=.+
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g--~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~ 109 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDG--TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKE 109 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETT--EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSS
T ss_pred EEEEECC-CCCcccCccEEecCCC--EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecC
Confidence 3455554 33 335567786677 5777877766 69999999999887766542 223345554 33333334448
Q ss_pred CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee--ccCC---ceeeE
Q 016457 146 SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI--NVGT---SVGKV 220 (389)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~---~i~~~ 220 (389)
+...+||..+.+.+.++. ....=..++ .++. .|+.......++++|..+.. ....+. .... .++-+
T Consensus 110 ~~~f~yd~~tl~~~~~~~--y~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP~~f~----~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFP--YPGEGWGLT--SDGK-RLIMSDGSSRLYFLDPETFK----EVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp SEEEEEETTTTEEEEEEE---SSS--EEE--ECSS-CEEEE-SSSEEEEE-TTT-S----EEEEEE-EETTEE---EEEE
T ss_pred CeEEEEccccceEEEEEe--cCCcceEEE--cCCC-EEEEECCccceEEECCcccc----eEEEEEEEECCEECCCcEeE
Confidence 999999999999998887 344556666 3454 55555556789999987432 222222 2222 35567
Q ss_pred EEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC---ccCCCCCceeeecccCCCCeEEEEEec
Q 016457 221 GFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS---WTLDDVDYFVDCHYPGEGENLWVIGGT 290 (389)
Q Consensus 221 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~l~~g~ 290 (389)
.+. +|...+-.-....|...|..+|++...+.-..-..... -.....+-.+.+++.|..++ +++||-
T Consensus 181 E~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~-l~vTGK 250 (264)
T PF05096_consen 181 EYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR-LFVTGK 250 (264)
T ss_dssp EEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE-EEEEET
T ss_pred EEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE-EEEEeC
Confidence 775 56666666667789999999999988775321111000 00012456789999998876 467773
No 370
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.80 E-value=7.5e-05 Score=40.99 Aligned_cols=39 Identities=41% Similarity=0.711 Sum_probs=33.8
Q ss_pred ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457 70 GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110 (389)
Q Consensus 70 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 110 (389)
+++...+..|...|.++.|.+.+ ..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG--KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC--CEEEEecCCCeEEEcC
Confidence 35566777889999999999988 6999999999999996
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.75 E-value=0.0013 Score=62.14 Aligned_cols=142 Identities=10% Similarity=0.010 Sum_probs=99.6
Q ss_pred CEEEEE-ecCCeEEEEEccCCeEEEEEEcCCCC-eEEEEEeC-----CCCeEEEeecCCeEEEEECcCCc--eeee-ee-
Q 016457 95 HVLHSC-SSDGTIRAWDTRSFHEVWSVTAGSQE-IFCFSFGG-----STDYLLAAGCGSQIQFWDWRNKK--QVAC-LE- 163 (389)
Q Consensus 95 ~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~--~~~~-~~- 163 (389)
.+|+.- .....|.-.|+..|+.+..++.+... |..++-.. .....++|-+++.+..||.|-.. .+.. ..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 344443 45577999999999999999988543 55554321 23456778888999999999542 2211 10
Q ss_pred ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEE
Q 016457 164 ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWD 243 (389)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d 243 (389)
-......+|++-..+| .||+|+.+|.|++||-- +. .....+.+.+.+|..|..+ .+|+++++.+. ..|.+++
T Consensus 574 Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~---~AKT~lp~lG~pI~~iDvt-~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GK---RAKTALPGLGDPIIGIDVT-ADGKWILATCK-TYLLLID 645 (794)
T ss_pred cccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-ch---hhhhcCCCCCCCeeEEEec-CCCcEEEEeec-ceEEEEE
Confidence 0244568899998887 79999999999999954 22 2233344668999999999 88887776654 5666777
Q ss_pred c
Q 016457 244 W 244 (389)
Q Consensus 244 ~ 244 (389)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
No 372
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.011 Score=48.28 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=113.3
Q ss_pred ec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC
Q 016457 36 FG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS 113 (389)
Q Consensus 36 ~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 113 (389)
.+ ...|.++.|+|+.+.|++......-.|+=..+|+.+.++.- --...-.|++..++ ++.++--.++.+.++.+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n--~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN--QFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC--EEEEEehhcceEEEEEEcC
Confidence 44 56699999999999888888777777776677888877642 12234567787777 6777777888898888765
Q ss_pred CeEEEE-----EE-----cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce-e--eeee------ecccCCeeEEE
Q 016457 114 FHEVWS-----VT-----AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ-V--ACLE------ESHVEDVTQVH 174 (389)
Q Consensus 114 ~~~~~~-----~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~--~~~~------~~~~~~v~~~~ 174 (389)
...+.. +. ..+.....++|.|.+..++++=.-.-+.||....... + .... .-.-..|+++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 422211 11 1156788999999999999998877777776653321 1 0000 01124578889
Q ss_pred EecCCCCeEEEEeCCCcEEEEecCCC
Q 016457 175 FVPNNQNKVVSASVDGLICTFDTGGD 200 (389)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~ 200 (389)
|++...++++-+.+++.+...|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 99877678888888898988888843
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.022 Score=48.31 Aligned_cols=203 Identities=12% Similarity=0.023 Sum_probs=117.8
Q ss_pred CeEEEEecC-ceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec----C-CCCcEEEEEEeCCCCC
Q 016457 21 NSIKRFGLK-NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK----G-HSSTVNQISFSGPSTP 94 (389)
Q Consensus 21 ~~i~~w~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~----~-~~~~v~~i~~~~~~~~ 94 (389)
+.|..|+.. .....+...+.+.++..-..+..|+++. .-+.+++.+++..+..+. + .....+.+...|++
T Consensus 47 ~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG-- 122 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG-- 122 (307)
T ss_pred CeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC--
Confidence 344445443 2333343345555555444444555543 346777776665433221 1 22456788888888
Q ss_pred CEEEEEecC----------CeEEEEEcc-CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcC--Cc---
Q 016457 95 HVLHSCSSD----------GTIRAWDTR-SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRN--KK--- 157 (389)
Q Consensus 95 ~~l~s~~~d----------g~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~--~~--- 157 (389)
.+..+... ..-.+|-+. .+..+..+..+-..-+.|+|+|+++.++.+-+ .+.|.-|++.. +.
T Consensus 123 -~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~ 201 (307)
T COG3386 123 -RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG 201 (307)
T ss_pred -CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC
Confidence 34443333 111455554 56666666655566678999999999888877 58888887752 11
Q ss_pred e--eeeeeecccCCeeEEEEecCCCCeEEEEeCCC-cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457 158 Q--VACLEESHVEDVTQVHFVPNNQNKVVSASVDG-LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT 234 (389)
Q Consensus 158 ~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 234 (389)
. ...+. ...+..-.++...+|. +.+++..+| .|..|+.. + +.+..+.-....+.+++|-.++.+.|++.+
T Consensus 202 ~~~~~~~~-~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G----~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 202 RRGFVDFD-EEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-G----KLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred cceEEEcc-CCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-C----cEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 1 11111 2345556678888884 654554444 89999988 3 234444444477888888766555555444
Q ss_pred c
Q 016457 235 H 235 (389)
Q Consensus 235 ~ 235 (389)
.
T Consensus 275 ~ 275 (307)
T COG3386 275 A 275 (307)
T ss_pred c
Confidence 4
No 374
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.67 E-value=0.032 Score=48.67 Aligned_cols=237 Identities=11% Similarity=0.132 Sum_probs=105.3
Q ss_pred CCCeEEEEe-cCCeEEEEeCCCc----eeeeeecC---CC----CcEEEEEEeCCCCCCEEEEEe--c----CCeEEEEE
Q 016457 49 DWSLMAVSL-STNVVKLYSPVTG----QYSGECKG---HS----STVNQISFSGPSTPHVLHSCS--S----DGTIRAWD 110 (389)
Q Consensus 49 ~~~~l~~~~-~d~~i~iw~~~~~----~~~~~~~~---~~----~~v~~i~~~~~~~~~~l~s~~--~----dg~i~iwd 110 (389)
+.++|+..+ ..+.|+|.|+.+. ++.+.+.. +. ..-..+...|++ +.++|+- . -|-+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G--~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG--RIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS----EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc--cEEEEeccCCCCCCCCcEEEEc
Confidence 345666665 6789999998742 34444432 11 223344455677 6888743 2 24578888
Q ss_pred ccCCeEEEEEEcC---CCCeEEEEEeCCCCeEEEeec--------------------CCeEEEEECcCCceeeeeeeccc
Q 016457 111 TRSFHEVWSVTAG---SQEIFCFSFGGSTDYLLAAGC--------------------GSQIQFWDWRNKKQVACLEESHV 167 (389)
Q Consensus 111 ~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~ 167 (389)
-++.+........ ..--..+-|.|..+.++++.. ...+.+||+.+.+.++++..+..
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 8887777777653 233456778888888887642 25899999999999999884333
Q ss_pred C-CeeEEEEecC--CCCeEEEEeCCCcEEEEec-CCCCCCCccceee-----------------eccCCceeeEEEecCC
Q 016457 168 E-DVTQVHFVPN--NQNKVVSASVDGLICTFDT-GGDINDDDLLESV-----------------INVGTSVGKVGFFGET 226 (389)
Q Consensus 168 ~-~v~~~~~~~~--~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~ 226 (389)
. ....|.|..+ ...-++.+.-...|..|-- ..+.-..+.+..+ .....-|+.+..+ .+
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lD 322 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LD 322 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE--TT
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-cC
Confidence 2 4556777543 3322444444445554443 2111001111111 1113457888998 55
Q ss_pred CcEEEEEe-cCCcEEEEEcCCCce---eEEeecccccccCCc----cCCCCCceeeecccCCCCeEEEEE
Q 016457 227 NKHLWCLT-HIETLSIWDWKDGQN---VASFENARSLASDSW----TLDDVDYFVDCHYPGEGENLWVIG 288 (389)
Q Consensus 227 ~~~l~~~~-~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~~ 288 (389)
.++|+.++ ..|.|+.||+.+... ..++.-...+..... ...-.+...-+..|.||+++|+.+
T Consensus 323 DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 56665554 589999999987533 322221111100000 000112335567888899877544
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.64 E-value=0.023 Score=46.17 Aligned_cols=221 Identities=10% Similarity=0.025 Sum_probs=126.9
Q ss_pred ceeeeeecCcceEEEeecCCC-CeEEEEecCC-eEEEEeCCCceeeeeecCCCCc--EEEEEEeCCCCCCEEEEEec---
Q 016457 30 NSIQTNFGDDYVFEIVPKNDW-SLMAVSLSTN-VVKLYSPVTGQYSGECKGHSST--VNQISFSGPSTPHVLHSCSS--- 102 (389)
Q Consensus 30 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~~l~s~~~--- 102 (389)
+.+....-...-..|+|+|.- .-++.+-.-| ...++|.+..+....+...++. ---=.|+|++ .+|...-.
T Consensus 59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG--~~LYATEndfd 136 (366)
T COG3490 59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG--RLLYATENDFD 136 (366)
T ss_pred ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC--cEEEeecCCCC
Confidence 333333335666788899865 4455555544 4678898877665554322111 1123689999 56665433
Q ss_pred --CCeEEEEEccCC-eEEEEEEcCCCCeEEEEEeCCCCeEEEeec------------------CCeEEEEECcCCceeee
Q 016457 103 --DGTIRAWDTRSF-HEVWSVTAGSQEIFCFSFGGSTDYLLAAGC------------------GSQIQFWDWRNKKQVAC 161 (389)
Q Consensus 103 --dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~ 161 (389)
-|.|-|||.+.+ +.+..+..|.-....+.+.+++..++.+.. .-++.+.|..+++.+.+
T Consensus 137 ~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liek 216 (366)
T COG3490 137 PNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK 216 (366)
T ss_pred CCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhh
Confidence 367999998853 456677777777778889988888877653 12455556566665544
Q ss_pred eee---cccCCeeEEEEecCCCCeEEEEeCCCcE----EEEecCCCCCCCc----cceeeeccCCceeeEEEecCCCcEE
Q 016457 162 LEE---SHVEDVTQVHFVPNNQNKVVSASVDGLI----CTFDTGGDINDDD----LLESVINVGTSVGKVGFFGETNKHL 230 (389)
Q Consensus 162 ~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i----~i~d~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l 230 (389)
... .+...|..++..++|. .++.+-..|.- -+.-...+....+ +..+.......|-+++.+..++...
T Consensus 217 h~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~ 295 (366)
T COG3490 217 HTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA 295 (366)
T ss_pred ccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence 331 2445688888888874 44333222210 0000000000000 0111112234677888875555555
Q ss_pred EEEecCCcEEEEEcCCCceeEEe
Q 016457 231 WCLTHIETLSIWDWKDGQNVASF 253 (389)
Q Consensus 231 ~~~~~d~~i~i~d~~~~~~~~~~ 253 (389)
+++-..+...+||..++..+..-
T Consensus 296 lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 296 LTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred EecCCCCeEEEEEcCCCcEEecc
Confidence 55556668889999999877554
No 376
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.63 E-value=0.03 Score=47.23 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=92.7
Q ss_pred CEEEEEecCCeEEEEEccC-CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee-----------
Q 016457 95 HVLHSCSSDGTIRAWDTRS-FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL----------- 162 (389)
Q Consensus 95 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------- 162 (389)
+.|+.|+.+| +.++++.. ........ ...|..+...|.-+.+++-+ |+.+.++++.........
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 6899999998 89999833 33333333 24499999987777766665 499999999865443311
Q ss_pred --eecccCCeeEEE--EecCCCCeEEEEeCCCcEEEEecCCCCCCC-ccceeeeccCCceeeEEEecCCCcEEEEEecCC
Q 016457 163 --EESHVEDVTQVH--FVPNNQNKVVSASVDGLICTFDTGGDINDD-DLLESVINVGTSVGKVGFFGETNKHLWCLTHIE 237 (389)
Q Consensus 163 --~~~~~~~v~~~~--~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 237 (389)
.......+...+ -...+. ..++......|.+|......... ....+ ......+..++|. . +.++.+..+
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke-~~lp~~~~~i~~~-~--~~i~v~~~~- 157 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKE-ISLPDPPSSIAFL-G--NKICVGTSK- 157 (275)
T ss_pred cccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEE-EEcCCCcEEEEEe-C--CEEEEEeCC-
Confidence 101223344444 123333 44445556699999988542222 23333 4456888999998 3 367777654
Q ss_pred cEEEEEcCCCceeEEe
Q 016457 238 TLSIWDWKDGQNVASF 253 (389)
Q Consensus 238 ~i~i~d~~~~~~~~~~ 253 (389)
...+.|+.++.....+
T Consensus 158 ~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELL 173 (275)
T ss_pred ceEEEecCCCCceEEe
Confidence 4778999877654443
No 377
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.62 E-value=0.00029 Score=38.47 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=33.6
Q ss_pred CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEE
Q 016457 114 FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWD 152 (389)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 152 (389)
+++...+..|...|.++.|++.+..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778888999999998888899999999999996
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0054 Score=53.97 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=97.9
Q ss_pred EEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC-------eEEEeecCCeEEEEECcCCce-eeeeeec--
Q 016457 96 VLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD-------YLLAAGCGSQIQFWDWRNKKQ-VACLEES-- 165 (389)
Q Consensus 96 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~-~~~~~~~-- 165 (389)
+|.++.....++-.|++.|+.+..++.+.. |+-+.+.|+.. .-++|-++..|.-||.|-... +.....+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 455566666788889999999999998755 77777776542 345566689999999984322 1111112
Q ss_pred --ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEE
Q 016457 166 --HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWD 243 (389)
Q Consensus 166 --~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d 243 (389)
......|.+-..+| .+++|+.+|.|++||-- +. .....+.+.+.+|..|..+ .+|+++++.+ +..+.+-+
T Consensus 427 y~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri-~~---~AKTAlPgLG~~I~hVdvt-adGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRI-GR---RAKTALPGLGDAIKHVDVT-ADGKWILATC-KTYLLLID 498 (644)
T ss_pred cccccccceeeecCCc--eEEEeecCCcEEeehhh-hh---hhhhcccccCCceeeEEee-ccCcEEEEec-ccEEEEEE
Confidence 23456778877777 79999999999999984 22 2233456678899999998 7787766544 45666666
Q ss_pred cC
Q 016457 244 WK 245 (389)
Q Consensus 244 ~~ 245 (389)
+.
T Consensus 499 t~ 500 (644)
T KOG2395|consen 499 TL 500 (644)
T ss_pred Ee
Confidence 53
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.45 E-value=0.062 Score=50.22 Aligned_cols=173 Identities=9% Similarity=0.003 Sum_probs=93.5
Q ss_pred CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe------cCC--eEEEEEccCCeEEEEEEcCCCCeEEE
Q 016457 59 TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS------SDG--TIRAWDTRSFHEVWSVTAGSQEIFCF 130 (389)
Q Consensus 59 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~------~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~ 130 (389)
+|.+.-.+-..-.++.-..+....+.+.+++|++ +.++..- .|. .|.+++.. +.. ..+... ...+.-
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG--~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~P 402 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSG--RQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRP 402 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCC--CEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCc
Confidence 6666555433223333333333467899999999 5555544 244 44444542 222 333222 348888
Q ss_pred EEeCCCCeEEEeecC------------CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE---E
Q 016457 131 SFGGSTDYLLAAGCG------------SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT---F 195 (389)
Q Consensus 131 ~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i---~ 195 (389)
.|+|+++.+.+.... +.+.+.++..++... . ....|..+.|+|+|. .++... ++.|++ -
T Consensus 403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~--~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--R--VPGPISELQLSRDGV-RAAMII-GGKVYLAVVE 476 (591)
T ss_pred eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--c--cCCCcCeEEECCCCC-EEEEEE-CCEEEEEEEE
Confidence 999998877766432 233333444333322 1 245799999999996 666655 577777 3
Q ss_pred ecCCCCCCCccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457 196 DTGGDINDDDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW 244 (389)
Q Consensus 196 d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 244 (389)
....+.........+. .....+..+.|. .++. |+++..++.-.+|.+
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~-~~~~-L~V~~~~~~~~v~~v 524 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWR-TGDS-LVVGRSDPEHPVWYV 524 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEe-cCCE-EEEEecCCCCceEEE
Confidence 3332211111112222 233446889998 5655 445555554445543
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.40 E-value=0.051 Score=44.34 Aligned_cols=195 Identities=12% Similarity=0.080 Sum_probs=114.6
Q ss_pred eeeeeec--CcceEEEeecCCCCeEEEEecCC--eEEEEeCCCceeeeeecCC-CCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457 31 SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTN--VVKLYSPVTGQYSGECKGH-SSTVNQISFSGPSTPHVLHSCSSDGT 105 (389)
Q Consensus 31 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~ 105 (389)
.+.++.+ ..-.-.+.|..++.++-+.+.-| .|+.+|+.+|+......-. .--=-.++...+ .+..-.-.++.
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d---~l~qLTWk~~~ 111 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD---KLYQLTWKEGT 111 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT---EEEEEESSSSE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC---EEEEEEecCCe
Confidence 3445555 44455788877887777777766 7999999999876554321 111223444433 34555567889
Q ss_pred EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-ccc---CCeeEEEEecCCCC
Q 016457 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-SHV---EDVTQVHFVPNNQN 181 (389)
Q Consensus 106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~---~~v~~~~~~~~~~~ 181 (389)
..+||..+.+.+.++... ..=+.++. ++..|+.+.....|.++|..+.+...++.- ... ..++.+.+. +|.
T Consensus 112 ~f~yd~~tl~~~~~~~y~-~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~- 186 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYP-GEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK- 186 (264)
T ss_dssp EEEEETTTTEEEEEEE-S-SS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-
T ss_pred EEEEccccceEEEEEecC-CcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-
Confidence 999999999999988764 56777874 677888888789999999988877666551 111 235556665 342
Q ss_pred eEEEEeCCCcEEEEecCCCCCCC-----cccee------eeccCCceeeEEEecCCCcEEEEE
Q 016457 182 KVVSASVDGLICTFDTGGDINDD-----DLLES------VINVGTSVGKVGFFGETNKHLWCL 233 (389)
Q Consensus 182 ~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~------~~~~~~~i~~~~~~~~~~~~l~~~ 233 (389)
+.|=.-....|...|..++.-.. ..... ........+.||+.|..+.++++|
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55545555566666776653110 00000 011135678999996666666665
No 381
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.39 E-value=0.074 Score=45.97 Aligned_cols=267 Identities=11% Similarity=0.043 Sum_probs=124.7
Q ss_pred CeEEEEecCc-eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE
Q 016457 21 NSIKRFGLKN-SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL 97 (389)
Q Consensus 21 ~~i~~w~~~~-~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l 97 (389)
..+.+.|+.+ .+.++.. .+......++|+.+.++.......|+-.|+++++....+......+-...|..+.....+
T Consensus 60 ~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~ 139 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKL 139 (386)
T ss_dssp -EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEE
T ss_pred cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEE
Confidence 3444555542 3444433 233445667788888776666678999999998776666666666666677543321343
Q ss_pred EEEec----------------------CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC-----eEEE
Q 016457 98 HSCSS----------------------DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS-----QIQF 150 (389)
Q Consensus 98 ~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i 150 (389)
+-.-. ...|.--|+.+|+....+.. ..-+..+.|+|.+..+++-+..| .-+|
T Consensus 140 ~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~Ri 218 (386)
T PF14583_consen 140 VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRI 218 (386)
T ss_dssp EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SE
T ss_pred EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcceeceEE
Confidence 32211 12344456667666555554 47788999999999988876633 1356
Q ss_pred EECcC-Cceeeeee-ecccCCeeEEEEecCCCCeEEEEe----CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEec
Q 016457 151 WDWRN-KKQVACLE-ESHVEDVTQVHFVPNNQNKVVSAS----VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFG 224 (389)
Q Consensus 151 wd~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 224 (389)
|-+++ +.....+. ......+..=-|.|+|..+...+. .+..|.-+|+.++.. ..+...+ ....+-.+
T Consensus 219 W~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-----~~~~~~p-~~~H~~ss- 291 (386)
T PF14583_consen 219 WTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-----RRLMEMP-WCSHFMSS- 291 (386)
T ss_dssp EEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-----EEEEEE--SEEEEEE--
T ss_pred EEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-----eEEEeCC-ceeeeEEc-
Confidence 65543 22222222 112233445568899964444332 244567777775421 1122122 22333334
Q ss_pred CCCcEEEEEecCC----------------cEEEEEcCCCceeEEeecccccccCCccC-CCCC--ceeeecccCCCCeEE
Q 016457 225 ETNKHLWCLTHIE----------------TLSIWDWKDGQNVASFENARSLASDSWTL-DDVD--YFVDCHYPGEGENLW 285 (389)
Q Consensus 225 ~~~~~l~~~~~d~----------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~i~~~~~~~~~~~~~ 285 (389)
+++++++-=+.|. -|+++++..++... +..+. .+|.. .+.. .=....|+|||+. +
T Consensus 292 ~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~----~sw~v~~~~~q~~hPhp~FSPDgk~-V 365 (386)
T PF14583_consen 292 PDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHD----TSWKVLDGDRQVTHPHPSFSPDGKW-V 365 (386)
T ss_dssp TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-----------BTTBSSTT----EE-TTSSE-E
T ss_pred CCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeecc----CcceeecCCCccCCCCCccCCCCCE-E
Confidence 6677665444432 45667776654332 22111 12211 0111 1245789999985 3
Q ss_pred EEEecCCceEEEEEec
Q 016457 286 VIGGTGAGTVGYFPVN 301 (389)
Q Consensus 286 l~~g~~dg~i~i~~~~ 301 (389)
|++....|...||-++
T Consensus 366 lF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 366 LFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEEE-TTSS-EEEEEE
T ss_pred EEECCCCCCccEEEEe
Confidence 5677778888887654
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.37 E-value=0.069 Score=49.91 Aligned_cols=185 Identities=9% Similarity=-0.004 Sum_probs=101.1
Q ss_pred CcceEEEeecCCCCeEEEEe------cCC--eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC------
Q 016457 38 DDYVFEIVPKNDWSLMAVSL------STN--VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD------ 103 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~------~d~--~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------ 103 (389)
...+.+.+++|+|+.+|... .|. .|.+++.. +.......+ ...+.-.|+|++ ..|++....
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG--~~lw~v~dg~~~~~v 423 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDA--DAVWVVVDGNTVVRV 423 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCC--CceEEEecCcceEEE
Confidence 34678899999999887765 243 45555542 333222233 237888999997 566666432
Q ss_pred ------CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEE---EECcCCce-e---eeeeecccCCe
Q 016457 104 ------GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQF---WDWRNKKQ-V---ACLEESHVEDV 170 (389)
Q Consensus 104 ------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~~~~~~~~v 170 (389)
+.+.+.++..+.... .....|..+.|+|++.+++... ++.|.+ -....+.. + ..+...-...+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 222222333332222 2246799999999999988876 477777 44334431 1 11221233446
Q ss_pred eEEEEecCCCCeEEEEeCCCcEEEEe--cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcE
Q 016457 171 TQVHFVPNNQNKVVSASVDGLICTFD--TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239 (389)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i 239 (389)
..+.|.+++. |+++..++.-.+|. +.... .. ...-.....++..++-. ++ .++....++.+
T Consensus 500 ~~l~W~~~~~--L~V~~~~~~~~v~~v~vDG~~--~~-~~~~~n~~~~v~~vaa~-~~--~iyv~~~~g~~ 562 (591)
T PRK13616 500 VSLDWRTGDS--LVVGRSDPEHPVWYVNLDGSN--SD-ALPSRNLSAPVVAVAAS-PS--TVYVTDARAVL 562 (591)
T ss_pred ccceEecCCE--EEEEecCCCCceEEEecCCcc--cc-ccCCCCccCceEEEecC-Cc--eEEEEcCCceE
Confidence 8899999984 44555544444444 44221 11 10111123456666655 22 45555555533
No 383
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.34 E-value=0.16 Score=48.65 Aligned_cols=309 Identities=13% Similarity=0.097 Sum_probs=164.8
Q ss_pred ccCCCCeEEEEecCcee-------eeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457 16 SCDNVNSIKRFGLKNSI-------QTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF 88 (389)
Q Consensus 16 s~~~~~~i~~w~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~ 88 (389)
.+..||.+..+.+.... +...|..++.=-.|+..++.-+.+..|.-..+|..+ ++.+.+--.-+.--....|
T Consensus 600 valgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f 678 (1096)
T KOG1897|consen 600 VALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPF 678 (1096)
T ss_pred EEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHHhhhhccc
Confidence 35567777766553211 112234444444565554433444446666677643 4443322111111122234
Q ss_pred eCCCCCCEEEEEecCCeEEEEEccCCeE--EEEEEcCCCCeEEEEEeCCCCeEEEeec-----------C---CeEEEEE
Q 016457 89 SGPSTPHVLHSCSSDGTIRAWDTRSFHE--VWSVTAGSQEIFCFSFGGSTDYLLAAGC-----------G---SQIQFWD 152 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d---~~i~iwd 152 (389)
+.+..+..++++..+ .+++..++.-+. ++++..+ .....+++.+....+.+.+. . ..++++|
T Consensus 679 ~s~a~~d~l~~~~~~-~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD 756 (1096)
T KOG1897|consen 679 NSDAYPDSLASANGG-ALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD 756 (1096)
T ss_pred ccccCCceEEEecCC-ceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEec
Confidence 444444567776644 577776654332 3344433 55666777653333333332 1 2467777
Q ss_pred CcCCceeeeeeecccC---CeeEEEEecCCCCeEEEEeC----------CCcEEEEecCCCCCCCccceeeeccCCceee
Q 016457 153 WRNKKQVACLEESHVE---DVTQVHFVPNNQNKVVSASV----------DGLICTFDTGGDINDDDLLESVINVGTSVGK 219 (389)
Q Consensus 153 ~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 219 (389)
-++.+.+...+..... .+.+..|..+...++++|+. .|.|.+|...... ..+ +......++.+.+
T Consensus 757 ~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-~L~-~v~e~~v~Gav~a 834 (1096)
T KOG1897|consen 757 QNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-SLE-LVAETVVKGAVYA 834 (1096)
T ss_pred CCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-cee-eeeeeeeccceee
Confidence 7666655443311222 34455588774457777763 5778888877311 111 1112223455666
Q ss_pred EEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457 220 VGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299 (389)
Q Consensus 220 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~ 299 (389)
+... +++++|. -...|++|+..+.+.++.-.. +..++..+.....|+ .++.|..-+.+.+-.
T Consensus 835 L~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~------------~~~~~~aL~l~v~gd--eI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 835 LVEF--NGKLLAG--INQSVRLYEWTTERELRIECN------------ISNPIIALDLQVKGD--EIAVGDLMRSITLLQ 896 (1096)
T ss_pred hhhh--CCeEEEe--cCcEEEEEEccccceehhhhc------------ccCCeEEEEEEecCc--EEEEeeccceEEEEE
Confidence 6553 4555544 456899999988866655444 447778888888888 778888778777765
Q ss_pred eccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457 300 VNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~ 361 (389)
....+- .....-..-+....+++ .+-.+..| +.+..+|.+.+-+.+..
T Consensus 897 y~~~eg----~f~evArD~~p~Wmtav---------eil~~d~y-lgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 897 YKGDEG----NFEEVARDYNPNWMTAV---------EILDDDTY-LGAENSGNLFTVRKDSD 944 (1096)
T ss_pred EeccCC----ceEEeehhhCccceeeE---------EEecCceE-EeecccccEEEEEecCC
Confidence 554331 01122222344555555 33333333 55667888888777744
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.065 Score=43.99 Aligned_cols=173 Identities=10% Similarity=0.107 Sum_probs=110.9
Q ss_pred ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeec-CCeEEEEEC
Q 016457 76 CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGC-GSQIQFWDW 153 (389)
Q Consensus 76 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~ 153 (389)
+.+-...+.++.|+|+. +.|++......-.++=...|+.+.++... -.....+.+. .++.++.+.. ++.+.++.+
T Consensus 81 i~g~~~nvS~LTynp~~--rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 81 ILGETANVSSLTYNPDT--RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccccceeeCCCc--ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEe-cCCEEEEEehhcceEEEEEE
Confidence 34555669999999998 67777777777677766789998887653 3445567777 4444444444 888888877
Q ss_pred cCCceeee-----ee---ecc-cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc-------CCce
Q 016457 154 RNKKQVAC-----LE---ESH-VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV-------GTSV 217 (389)
Q Consensus 154 ~~~~~~~~-----~~---~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-------~~~i 217 (389)
.....+.. +. ..+ ......++|.|.+. .|+.+=+..-+.||......... .......+ -..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l-~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSL-SVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCccc-ccccccCcccccceEeecc
Confidence 65432211 11 012 45678899999986 78877777778888776332110 01111111 1356
Q ss_pred eeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457 218 GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE 254 (389)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 254 (389)
.++.|.+..+.+|+.+.+++.+.-.|.. |..+..+.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 7888887778888888888888777765 55554444
No 385
>PRK10115 protease 2; Provisional
Probab=97.33 E-value=0.17 Score=48.65 Aligned_cols=242 Identities=11% Similarity=0.026 Sum_probs=122.4
Q ss_pred cceEEEeecCCCCeEEEEecC-----CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC-----CeEEE
Q 016457 39 DYVFEIVPKNDWSLMAVSLST-----NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD-----GTIRA 108 (389)
Q Consensus 39 ~~v~~~~~~~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~i 108 (389)
-.+..+.++||+++|+.+.+. ..|++.|+.+|+.+...-.... ..++|.+++. .++++...+ ..|..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~-~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSW-TFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCC-EEEEEEecCCCCCCCEEEE
Confidence 346678899999999887653 2688999988864432221222 4699999883 344443322 35777
Q ss_pred EEccCC--eEEEEEEcCCCCeE-EEEEeCCCCeEEEeec---CCeEEEEECc--CCceeeeeeecccCCeeEEEEecCCC
Q 016457 109 WDTRSF--HEVWSVTAGSQEIF-CFSFGGSTDYLLAAGC---GSQIQFWDWR--NKKQVACLEESHVEDVTQVHFVPNNQ 180 (389)
Q Consensus 109 wd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~ 180 (389)
+++.++ +....+........ .+..+.++..++..+. ++.+.+++.. .+.....+. +...+..-..+..+.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 281 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP--RRKDHEYSLDHYQHR 281 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE--CCCCCEEEEEeCCCE
Confidence 888877 33444544333333 2333336666665444 5689999853 333222222 222222212233332
Q ss_pred CeEEEEeC---CCcEEEEecCCCCCCCccceeeecc--CCceeeEEEecCCCcEEEEEecCCcEEE--EEcCCCceeEEe
Q 016457 181 NKVVSASV---DGLICTFDTGGDINDDDLLESVINV--GTSVGKVGFFGETNKHLWCLTHIETLSI--WDWKDGQNVASF 253 (389)
Q Consensus 181 ~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~d~~i~i--~d~~~~~~~~~~ 253 (389)
+++.... ...|...++.. ......+..+ ...+..+.+. . +.++++...++.-++ ++...+ .+..+
T Consensus 282 -ly~~tn~~~~~~~l~~~~~~~----~~~~~~l~~~~~~~~i~~~~~~-~-~~l~~~~~~~g~~~l~~~~~~~~-~~~~l 353 (686)
T PRK10115 282 -FYLRSNRHGKNFGLYRTRVRD----EQQWEELIPPRENIMLEGFTLF-T-DWLVVEERQRGLTSLRQINRKTR-EVIGI 353 (686)
T ss_pred -EEEEEcCCCCCceEEEecCCC----cccCeEEECCCCCCEEEEEEEE-C-CEEEEEEEeCCEEEEEEEcCCCC-ceEEe
Confidence 3333322 12344444431 1122333444 2367778876 3 346666666765444 444322 33333
Q ss_pred ecccccccCCccCCCCCceeeeccc--CCCCeEEEEEecC--CceEEEEEeccCC
Q 016457 254 ENARSLASDSWTLDDVDYFVDCHYP--GEGENLWVIGGTG--AGTVGYFPVNYGG 304 (389)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~g~~--dg~i~i~~~~~~~ 304 (389)
.-. ....+..+.++ +++..+++...+. -+.++.+|..+++
T Consensus 354 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 354 AFD-----------DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred cCC-----------CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 210 11222223333 4444444333333 3678888887654
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.068 Score=43.62 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=75.3
Q ss_pred ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCe-EEEEEccCCeEEEEEEcCCC--CeEEEEEeCCCCeEEEeecC-
Q 016457 70 GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT-IRAWDTRSFHEVWSVTAGSQ--EIFCFSFGGSTDYLLAAGCG- 145 (389)
Q Consensus 70 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d- 145 (389)
|+++.... -...-..|+|+|... .-++.+-.-|+ ..++|....+...++...+. -.-.=.|+|++..|+++-.|
T Consensus 58 Gk~v~~~~-lpaR~Hgi~~~p~~~-ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 58 GKIVFATA-LPARGHGIAFHPALP-RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred Cceeeeee-cccccCCeecCCCCc-ceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 55554432 223445688888763 55666666565 56889888776665544321 12234689899888887653
Q ss_pred ----CeEEEEECcCC-ceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457 146 ----SQIQFWDWRNK-KQVACLEESHVEDVTQVHFVPNNQNKVVSA 186 (389)
Q Consensus 146 ----~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 186 (389)
|.|-+||.+.+ +.+..+. .|.-....+.+.++|+ .++.+
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~-t~GiGpHev~lm~DGr-tlvva 179 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFS-THGIGPHEVTLMADGR-TLVVA 179 (366)
T ss_pred CCCCceEEEEecccccceecccc-cCCcCcceeEEecCCc-EEEEe
Confidence 78999999854 4566776 7777788999999997 66555
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.29 E-value=0.00096 Score=38.37 Aligned_cols=34 Identities=18% Similarity=0.024 Sum_probs=30.4
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY 72 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~ 72 (389)
...|.+++|+|..++||.|..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 567999999999999999999999999998 4554
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.011 Score=56.66 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=76.4
Q ss_pred eEEEeecCCCCeEEEEecCCeEEEEeCCCc-eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEE
Q 016457 41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119 (389)
Q Consensus 41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 119 (389)
+..++-.-.+..++.|++.|.+-..|+... .+...=..-..+|++++|+.+| ..++.|-.+|.|.+||+..++.++.
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg--~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG--SLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC--ceeccccCCCcEEEEEccCCcceee
Confidence 333333334567899998999998887642 1111112245789999999999 7999999999999999999999988
Q ss_pred EEcCCCCeEEEE---EeCCCCeEEEeecCCeEEEEECc
Q 016457 120 VTAGSQEIFCFS---FGGSTDYLLAAGCGSQIQFWDWR 154 (389)
Q Consensus 120 ~~~~~~~v~~~~---~~~~~~~l~~~~~d~~i~iwd~~ 154 (389)
+..+..+.+++- +...+..++++...|. +|.+.
T Consensus 168 i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 887766655543 3334555666665665 55543
No 389
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.014 Score=56.29 Aligned_cols=211 Identities=11% Similarity=0.115 Sum_probs=112.3
Q ss_pred cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE-----EEEEcC------CCCeEEEEEeCCCCe-EEEeecCCeEE
Q 016457 82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV-----WSVTAG------SQEIFCFSFGGSTDY-LLAAGCGSQIQ 149 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~------~~~v~~~~~~~~~~~-l~~~~~d~~i~ 149 (389)
+|..+...++..-..++..+.+-.|..||+++-... .-+..| ..-..++.|+|.=.. .+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455555566752112333334447889998753221 111211 244567888876544 34445588888
Q ss_pred EEECcCCc-eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec-cCCceeeEEEecCCC
Q 016457 150 FWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN-VGTSVGKVGFFGETN 227 (389)
Q Consensus 150 iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 227 (389)
+..+.... .+..+. .....++++|+|.|+ .++.|-..|++.-|-..-... ..+..... ....|.+|+|. ...
T Consensus 182 V~~~~~~~~~v~s~p--~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~leik--~~ip~Pp~~e~yrvl~v~Wl-~t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP--VTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSLEIK--SEIPEPPVEENYRVLSVTWL-STQ 255 (1405)
T ss_pred hhhhhhhhhhhcccC--cccceeeEEeccccc-eeeEecCCCeEEEeeccccee--ecccCCCcCCCcceeEEEEe-cce
Confidence 88765432 233333 567789999999997 999999999999887763211 11111111 14678999998 444
Q ss_pred cEEEEEec-CC--------cEEEEEcCCCceeEEeecccccccCCc----cCCCCCceeeecccCCCCeEEEEEecCCce
Q 016457 228 KHLWCLTH-IE--------TLSIWDWKDGQNVASFENARSLASDSW----TLDDVDYFVDCHYPGEGENLWVIGGTGAGT 294 (389)
Q Consensus 228 ~~l~~~~~-d~--------~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~ 294 (389)
.++++-+. ++ ..+++... ...-..|...... ...| +..|...+.-..|.++...+.|++.+....
T Consensus 256 eflvvy~n~ts~~~dpd~y~~~~~k~k-p~g~~nF~E~~d~-tppfg~~~rq~h~y~~~L~~W~~~~~~vVvvansaSsE 333 (1405)
T KOG3630|consen 256 EFLVVYGNVTSETDDPDSYDQKMYKIK-PDGSANFQETFDI-TPPFGQIVRQPHMYKVTLSGWIEPDANVVVVANSASSE 333 (1405)
T ss_pred eEEEEecccccCcCCchhhhhcccccc-CcceeeeccccCC-CCCccccCccchhHHHhhhhhcccccceEEEecccccc
Confidence 45443322 11 11111111 0001111110000 0001 122445555667888777666666666666
Q ss_pred EEEEEe
Q 016457 295 VGYFPV 300 (389)
Q Consensus 295 i~i~~~ 300 (389)
|-||..
T Consensus 334 vsila~ 339 (1405)
T KOG3630|consen 334 VSILAS 339 (1405)
T ss_pred hhhhhh
Confidence 666665
No 390
>PHA02713 hypothetical protein; Provisional
Probab=97.23 E-value=0.053 Score=50.68 Aligned_cols=185 Identities=9% Similarity=-0.030 Sum_probs=91.8
Q ss_pred CCCeEEEEecC------CeEEEEeCCCcee--eeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-----eEEEEEccCCe
Q 016457 49 DWSLMAVSLST------NVVKLYSPVTGQY--SGECKGHSSTVNQISFSGPSTPHVLHSCSSDG-----TIRAWDTRSFH 115 (389)
Q Consensus 49 ~~~~l~~~~~d------~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~ 115 (389)
++.+.++|+.+ ..+..||+.+.+- +..+....... +++.. ++ .+.+.||.++ ++..||..+.+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~-~g--~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI-DD--TIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE-CC--EEEEECCcCCCCCCceEEEEECCCCe
Confidence 56677777753 3577888776532 22222111122 23333 45 5777887754 47889987664
Q ss_pred EEE--EEEcCCCCeEEEEEeCCCCeEEEeecC-----------------------CeEEEEECcCCce--eeeeeecccC
Q 016457 116 EVW--SVTAGSQEIFCFSFGGSTDYLLAAGCG-----------------------SQIQFWDWRNKKQ--VACLEESHVE 168 (389)
Q Consensus 116 ~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------------~~i~iwd~~~~~~--~~~~~~~~~~ 168 (389)
-.. .+.........+.+ ++...+.||.+ ..+..||.++.+- +..+. ...
T Consensus 379 W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r 454 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGT 454 (557)
T ss_pred EEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC--ccc
Confidence 322 11111112222222 44555555543 2477788776543 22222 111
Q ss_pred CeeEEEEecCCCCeEEEEeCC------CcEEEEecCC-CCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC--cE
Q 016457 169 DVTQVHFVPNNQNKVVSASVD------GLICTFDTGG-DINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE--TL 239 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~i 239 (389)
.-.+++.. ++. +.+.|+.+ ..+..||..+ .. ...+..+.. ......++.. ++.+.++|+.++ .+
T Consensus 455 ~~~~~~~~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~m~~-~r~~~~~~~~--~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 455 IRPGVVSH-KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITTTES-RLSALHTILH--DNTIMMLHCYESYMLQ 527 (557)
T ss_pred ccCcEEEE-CCE-EEEEeCCCCCCccceeEEEecCCCCCC--eeEccccCc-ccccceeEEE--CCEEEEEeeecceeeh
Confidence 11223322 243 67777654 2467888885 21 222222221 1222333333 567888888887 56
Q ss_pred EEEEcCCCc
Q 016457 240 SIWDWKDGQ 248 (389)
Q Consensus 240 ~i~d~~~~~ 248 (389)
..||..+.+
T Consensus 528 e~yd~~~~~ 536 (557)
T PHA02713 528 DTFNVYTYE 536 (557)
T ss_pred hhcCccccc
Confidence 666665543
No 391
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.21 E-value=0.066 Score=48.25 Aligned_cols=177 Identities=12% Similarity=0.060 Sum_probs=100.0
Q ss_pred CcceEEEeecCCCCeEEEEe--cCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC--CEEEEEecCCeEEEEEcc-
Q 016457 38 DDYVFEIVPKNDWSLMAVSL--STNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTR- 112 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--~~l~s~~~dg~i~iwd~~- 112 (389)
-.+|..++|....+.+.+.- .+|.+++=| .+.+ |.-+.|..+.|.|-+.. ..|++....+.|.+|.+.
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 45678888874444444432 133332221 1222 33456899999986421 245555667789999986
Q ss_pred ----CCeEEEEEEcC---CCC--eEEEEEeCCCCeEEEeecCCeEEEEECcCC--ceeeeeeecccCCeeEEEEecCCCC
Q 016457 113 ----SFHEVWSVTAG---SQE--IFCFSFGGSTDYLLAAGCGSQIQFWDWRNK--KQVACLEESHVEDVTQVHFVPNNQN 181 (389)
Q Consensus 113 ----~~~~~~~~~~~---~~~--v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~ 181 (389)
..+.+..-..+ .-+ -..+.|+|....|.+-.....-.+++++.. .....+. ..+.|.|.+|.++|..
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQR 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCcCCE
Confidence 22222221111 112 236789988877776665444345555533 3334443 5678999999999974
Q ss_pred eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEe
Q 016457 182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFF 223 (389)
Q Consensus 182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (389)
++++.+..=.-++||-..+....-.....+..++.|.++.-.
T Consensus 170 LVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT 211 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEAT 211 (671)
T ss_pred EEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEe
Confidence 444445555578888763322222233445556677776654
No 392
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.072 Score=41.34 Aligned_cols=187 Identities=13% Similarity=0.096 Sum_probs=109.0
Q ss_pred CEEEEEecCC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeeeeecccCCee
Q 016457 95 HVLHSCSSDG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACLEESHVEDVT 171 (389)
Q Consensus 95 ~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 171 (389)
.++.+.+.-| .|++||+++++.+.+-+.....+..=-...-++.+..-. .+|.-..+|.++.+.+..+. ..+.=.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~--y~GeGW 134 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS--YEGEGW 134 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc--cCCcce
Confidence 5777766443 699999999998876654322222211111234444433 47888999999988888776 444445
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc-CCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee
Q 016457 172 QVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV-GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV 250 (389)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 250 (389)
.++. ++.+ |+.+....+++.-|..+............+. -..++.+.|- +|...+-.-.+..|...+..+|+.+
T Consensus 135 gLt~--d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 135 GLTS--DDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeec--CCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEE
Confidence 5554 3433 4444445567776766432211111111111 1233445564 4556665556667778888889888
Q ss_pred EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe
Q 016457 251 ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG 289 (389)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g 289 (389)
..+....-.........|..-...+++.|++++ ++++|
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r-~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR-FLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCe-EEEec
Confidence 777644333323333335567788999998876 45676
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.16 E-value=0.024 Score=50.97 Aligned_cols=154 Identities=10% Similarity=0.116 Sum_probs=94.1
Q ss_pred CCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceeeeeeecccCCeeEEEEecCC----CCeEEEEeCCCcEEEEe
Q 016457 124 SQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN----QNKVVSASVDGLICTFD 196 (389)
Q Consensus 124 ~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~d~~i~i~d 196 (389)
-.++..++|. +|+.++...- +|.+++=| .+.+.+|+ .|..+.|.|-+ + .+++......|.+|.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE-----hV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE-----HVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQ 88 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc-----eeeeeeecCcccCCCC-ceEEEeccceEEEEE
Confidence 4688999998 8877776653 55555433 23444443 47889998863 3 456666688999999
Q ss_pred cCCCCCC-Cccce-eeecc--CCc--eeeEEEecCCCcEEEEEecCCcEEEEEcCCCce--eEEeecccccccCCccCCC
Q 016457 197 TGGDIND-DDLLE-SVINV--GTS--VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN--VASFENARSLASDSWTLDD 268 (389)
Q Consensus 197 ~~~~~~~-~~~~~-~~~~~--~~~--i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~ 268 (389)
+.....+ .+.+. +.-.. ..+ ...+.|+ |....|++-+....-.+++++.... ...+. .
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-------------~ 154 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDVSVLPSVHCDSSRVKADIK-------------T 154 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCceeEeeeeeeCCceEEEecc-------------C
Confidence 8732111 11111 11111 112 2467798 5566776666555444666654322 22232 3
Q ss_pred CCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457 269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
.+.|.+.+|.+||+++.++.|+ .=.-+|||-..
T Consensus 155 ~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~q 187 (671)
T PF15390_consen 155 SGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQ 187 (671)
T ss_pred CceEEEEEecCcCCEEEEEeCC-eEEEEEecCch
Confidence 4889999999999998777775 45567887543
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.14 E-value=0.27 Score=47.45 Aligned_cols=238 Identities=13% Similarity=0.111 Sum_probs=125.9
Q ss_pred CCeEEEEecCCeEEEEeCCCceeeeeecCCCCc--------EEEEEEeCC--------------CCCCEEEEEecCCeEE
Q 016457 50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSST--------VNQISFSGP--------------STPHVLHSCSSDGTIR 107 (389)
Q Consensus 50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--------v~~i~~~~~--------------~~~~~l~s~~~dg~i~ 107 (389)
+..|++++.++.|.-.|..+|+.+..+...... ...+.+... -....++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457788888899999999999998887532211 122333211 0114788889999999
Q ss_pred EEEccCCeEEEEEEcCCCCeE-------------EEEEeC--CCCeEEEeec----------CCeEEEEECcCCceeeee
Q 016457 108 AWDTRSFHEVWSVTAGSQEIF-------------CFSFGG--STDYLLAAGC----------GSQIQFWDWRNKKQVACL 162 (389)
Q Consensus 108 iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~ 162 (389)
-.|.++|+.+..+... +.|. .+.-.| .++.+++++. +|.|+-+|.++++.+..+
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999999876532 1110 011111 2456777643 588999999999999887
Q ss_pred eecccCCeeEEEEecCCCCeEEEEeCCC-cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEE
Q 016457 163 EESHVEDVTQVHFVPNNQNKVVSASVDG-LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSI 241 (389)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i 241 (389)
....... ... .+.+. ....++.+. ...-+|.+.+. + +.....+. ..+...+ .........++|.-
T Consensus 353 ~~g~p~~-~~~--~~~g~-~~~~gg~n~W~~~s~D~~~gl-----v--y~ptGn~~--pd~~g~~-r~~~~n~y~~slvA 418 (764)
T TIGR03074 353 DPGNPDP-TAP--PAPGE-TYTRNTPNSWSVASYDEKLGL-----V--YLPMGNQT--PDQWGGD-RTPADEKYSSSLVA 418 (764)
T ss_pred ecCCCCc-ccC--CCCCC-EeccCCCCccCceEEcCCCCe-----E--EEeCCCcc--ccccCCc-cccCcccccceEEE
Confidence 6221111 100 11222 222222111 23334443221 1 11111000 0000000 00000112456777
Q ss_pred EEcCCCceeEEeecccccccCCccCCCCCceeeecccC-CCC-eEEEEEecCCceEEEEEeccCCc
Q 016457 242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG-EGE-NLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
.|.++|+..-.++... ...|..+-.....-+.+.. +|+ .-.++.++.+|.++++|-++++.
T Consensus 419 LD~~TGk~~W~~Q~~~---hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 419 LDATTGKERWVFQTVH---HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred EeCCCCceEEEecccC---CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 7888888776665421 1122222112222222322 442 22678999999999999999876
No 395
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.14 E-value=0.17 Score=44.85 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=60.0
Q ss_pred EEeecCCCCeEEEEecCCeEEE---EeCC-----CceeeeeecC---CC--CcEEEEEEeCCC---------CCCEEEEE
Q 016457 43 EIVPKNDWSLMAVSLSTNVVKL---YSPV-----TGQYSGECKG---HS--STVNQISFSGPS---------TPHVLHSC 100 (389)
Q Consensus 43 ~~~~~~~~~~l~~~~~d~~i~i---w~~~-----~~~~~~~~~~---~~--~~v~~i~~~~~~---------~~~~l~s~ 100 (389)
.++.+|++..||.+..+..+.+ |+.. .++....+.+ +. +.|+++.+-|-. ....++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678999999999987776655 5331 1222222221 22 578888876531 11589999
Q ss_pred ecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEe
Q 016457 101 SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFG 133 (389)
Q Consensus 101 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 133 (389)
..+|.|++|.. +|..+..-..|..+|..+.+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999995 566666556677788877764
No 396
>PHA02713 hypothetical protein; Provisional
Probab=97.11 E-value=0.062 Score=50.20 Aligned_cols=214 Identities=9% Similarity=0.021 Sum_probs=100.5
Q ss_pred eEEEEeCCCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEecC------CeEEEEEccCCeEEE--EEEcCCCCeEEE
Q 016457 61 VVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSD------GTIRAWDTRSFHEVW--SVTAGSQEIFCF 130 (389)
Q Consensus 61 ~i~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~ 130 (389)
.+..||..+++-. ..+...... .+++.. ++ .+++.||.+ ..+..||+.+..-.. .+....... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~l-~~--~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAIV-DN--EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEEE-CC--EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE
Confidence 5677888765422 222211111 233333 44 577777754 346778887664321 111111222 23
Q ss_pred EEeCCCCeEEEeecCC-----eEEEEECcCCcee--eeeeecccCCeeEEEEecCCCCeEEEEeCCC-------------
Q 016457 131 SFGGSTDYLLAAGCGS-----QIQFWDWRNKKQV--ACLEESHVEDVTQVHFVPNNQNKVVSASVDG------------- 190 (389)
Q Consensus 131 ~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~------------- 190 (389)
+.. ++...+.||.++ .+..||..+.+-. ..+. ....-.+++. -++ .+.+.|+.++
T Consensus 348 ~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp--~~r~~~~~~~-~~g-~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 348 AVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP--IALSSYGMCV-LDQ-YIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EEE-CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC--cccccccEEE-ECC-EEEEEeCCCcccccccccccccc
Confidence 332 455555666543 4888998865422 2222 1111112222 234 3777777542
Q ss_pred ----------cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC------cEEEEEcCC-Cc--eeE
Q 016457 191 ----------LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE------TLSIWDWKD-GQ--NVA 251 (389)
Q Consensus 191 ----------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~------~i~i~d~~~-~~--~~~ 251 (389)
.+..||..+.. ...+..+. ....-.+++.. ++.+.+.|+.++ .+..||..+ .+ .+.
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~--W~~v~~m~-~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNI--WETLPNFW-TGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred cccccccccceEEEECCCCCe--EeecCCCC-cccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 46778877532 11111111 11111223332 456666676542 456788775 32 222
Q ss_pred EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCc--eEEEEEeccCCc
Q 016457 252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAG--TVGYFPVNYGGA 305 (389)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg--~i~i~~~~~~~~ 305 (389)
.+...+ . ...++.. ++ + +.+.|+.+| .+..||..+.+-
T Consensus 498 ~m~~~r------------~-~~~~~~~-~~-~-iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 498 TTESRL------------S-ALHTILH-DN-T-IMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred ccCccc------------c-cceeEEE-CC-E-EEEEeeecceeehhhcCcccccc
Confidence 222111 1 1112221 33 3 456777777 778888888765
No 397
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.08 E-value=0.11 Score=48.55 Aligned_cols=187 Identities=13% Similarity=0.093 Sum_probs=100.0
Q ss_pred CCCeEEEEecC------CeEEEEeCCCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEecC------CeEEEEEccCC
Q 016457 49 DWSLMAVSLST------NVVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSD------GTIRAWDTRSF 114 (389)
Q Consensus 49 ~~~~l~~~~~d------~~i~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~iwd~~~~ 114 (389)
.+.++++|+.+ ..+..||..+++-. ..+. ....-.+++...+ .+.++||.| .++-.||..+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~---~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNG---KLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECC---EEEEEccccCCCcccceEEEecCCCC
Confidence 45577777776 36888998876332 2233 2333455666643 588899988 35677888776
Q ss_pred eEEE--EEEcCCCCeEEEEEeCCCCeEEEeecCC-----eEEEEECcCCceeeeeeecccCCeeEEEE-ecCCCCeEEEE
Q 016457 115 HEVW--SVTAGSQEIFCFSFGGSTDYLLAAGCGS-----QIQFWDWRNKKQVACLEESHVEDVTQVHF-VPNNQNKVVSA 186 (389)
Q Consensus 115 ~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~ 186 (389)
+-.. .+....... +++.. .+...++||.|| +|-.||.++.+--..-. .......... .-+| .+.++|
T Consensus 360 ~W~~~a~M~~~R~~~-~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g-~iYi~G 434 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDF-GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGG-KLYIIG 434 (571)
T ss_pred ceeccCCccCccccc-eeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECC-EEEEEc
Confidence 5332 222222222 22222 566666677775 57888887654322111 1112222221 2234 377777
Q ss_pred eCCC------cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC-----cEEEEEcCCCce
Q 016457 187 SVDG------LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE-----TLSIWDWKDGQN 249 (389)
Q Consensus 187 ~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~ 249 (389)
+.++ .+..||..++. ...+..+. ....-..++.. ++.+.+.|+.|+ ++..||..+.+-
T Consensus 435 G~~~~~~~l~sve~YDP~t~~--W~~~~~M~-~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNT--WTLIAPMN-TRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred CcCCCccccceEEEEcCCCCc--eeecCCcc-cccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCce
Confidence 7554 46788888543 11111111 11122234443 566788888776 366777766543
No 398
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.02 E-value=0.24 Score=44.64 Aligned_cols=199 Identities=13% Similarity=0.072 Sum_probs=105.4
Q ss_pred cEEEEEEeCCCCCCEEEEE-ecCC----eEEEEEccCCeEEEEE-EcCCCCeEEEEEeCCCCeEEEeecCC---------
Q 016457 82 TVNQISFSGPSTPHVLHSC-SSDG----TIRAWDTRSFHEVWSV-TAGSQEIFCFSFGGSTDYLLAAGCGS--------- 146 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~--------- 146 (389)
.+....++|++ ++++.+ +..| .++++|+.+++.+... .. .....+.|.+++..++....+.
T Consensus 125 ~~~~~~~Spdg--~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDG--KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTS--SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCC--CEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 44467889999 566643 4444 5999999999876532 32 2233499998888887776532
Q ss_pred --eEEEEECcCCcee--eeeeecccCC-eeEEEEecCCCCeEEEEeCC---CcEEEEecCCCCCCCccceeeeccCCcee
Q 016457 147 --QIQFWDWRNKKQV--ACLEESHVED-VTQVHFVPNNQNKVVSASVD---GLICTFDTGGDINDDDLLESVINVGTSVG 218 (389)
Q Consensus 147 --~i~iwd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 218 (389)
.|+.|.+.+...- ..+....... ...+..+++++.+++..... ..+.+.|+............+......+.
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 3777887765432 3333122233 66888999997334444433 34788888753111223333333333333
Q ss_pred e-EEEecCCCcEEEEEec---CCcEEEEEcCCCce---eEEeecccccccCCccCCCCC--ceeeecccCCCCeEEEEEe
Q 016457 219 K-VGFFGETNKHLWCLTH---IETLSIWDWKDGQN---VASFENARSLASDSWTLDDVD--YFVDCHYPGEGENLWVIGG 289 (389)
Q Consensus 219 ~-~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~g 289 (389)
. +... ++.+++.... .+.|...++.+... ...+.. +.. .+..+.. .++. +++..
T Consensus 281 ~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~------------~~~~~~l~~~~~--~~~~-Lvl~~ 343 (414)
T PF02897_consen 281 YYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP------------EDEDVSLEDVSL--FKDY-LVLSY 343 (414)
T ss_dssp EEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--------------SSSEEEEEEEE--ETTE-EEEEE
T ss_pred EEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC------------CCCceeEEEEEE--ECCE-EEEEE
Confidence 3 3333 3334433322 24676777776642 223332 223 3444444 3443 34444
Q ss_pred cCCc--eEEEEEec
Q 016457 290 TGAG--TVGYFPVN 301 (389)
Q Consensus 290 ~~dg--~i~i~~~~ 301 (389)
..++ .|+++++.
T Consensus 344 ~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 344 RENGSSRLRVYDLD 357 (414)
T ss_dssp EETTEEEEEEEETT
T ss_pred EECCccEEEEEECC
Confidence 4443 67788887
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.99 E-value=0.069 Score=42.24 Aligned_cols=171 Identities=13% Similarity=0.093 Sum_probs=96.3
Q ss_pred CccccCCCCeEEEEecC----ceeeeeec------CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCC---
Q 016457 13 KSQSCDNVNSIKRFGLK----NSIQTNFG------DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGH--- 79 (389)
Q Consensus 13 ~~~s~~~~~~i~~w~~~----~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~--- 79 (389)
..+.|+..--|--||-. ...+++.. +...+.-..+|+|++ ..|.....--.+....+.+..-+.+|
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~ 151 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVE 151 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCce
Confidence 34455555556667632 22333221 455666778999988 44443211112222222222222222
Q ss_pred -----CCcEEEEEEeCCCCCCEEEEEecCCeEEEEE--ccCC-----eEEEEEEcC----CCCeEEEEEeCCCCeEEEee
Q 016457 80 -----SSTVNQISFSGPSTPHVLHSCSSDGTIRAWD--TRSF-----HEVWSVTAG----SQEIFCFSFGGSTDYLLAAG 143 (389)
Q Consensus 80 -----~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd--~~~~-----~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~ 143 (389)
-.--+.++|..+.. .+.++-+.+-+|.-|| ..+| +.+..++.. .-..-.++....+...+++-
T Consensus 152 ~i~~~v~IsNgl~Wd~d~K-~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ 230 (310)
T KOG4499|consen 152 LIWNCVGISNGLAWDSDAK-KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF 230 (310)
T ss_pred eeehhccCCccccccccCc-EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe
Confidence 23346788986663 4555666777888888 4444 333333321 12223455564555555555
Q ss_pred cCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457 144 CGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA 186 (389)
Q Consensus 144 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 186 (389)
..++|...|..+++.+.++. -....|+|++|-..+-..+++.
T Consensus 231 ng~~V~~~dp~tGK~L~eik-lPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILLEIK-LPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred cCcEEEEECCCCCcEEEEEE-cCCCceEEEEecCCCccEEEEE
Confidence 67899999999999999998 5578899999975532244443
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.0065 Score=58.01 Aligned_cols=92 Identities=12% Similarity=0.163 Sum_probs=65.4
Q ss_pred cCCCCeEEEEecCceeee-eec---CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEE---EEe
Q 016457 17 CDNVNSIKRFGLKNSIQT-NFG---DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQI---SFS 89 (389)
Q Consensus 17 ~~~~~~i~~w~~~~~~~~-~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i---~~~ 89 (389)
+++.|.+-..|....+.. ..+ .++|++++|+.+|+.++.|-.+|.|.+||+.++++++.+..|..+.+.+ .+.
T Consensus 105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t 184 (1206)
T KOG2079|consen 105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRT 184 (1206)
T ss_pred EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEe
Confidence 344455555554332221 122 8899999999999999999999999999999999988887666554444 344
Q ss_pred CCCCCCEEEEEecCCeEEEEEcc
Q 016457 90 GPSTPHVLHSCSSDGTIRAWDTR 112 (389)
Q Consensus 90 ~~~~~~~l~s~~~dg~i~iwd~~ 112 (389)
..+ ..++++...|. +|.+.
T Consensus 185 ~~n--S~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 185 SQN--SKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCC--cEEEEccCCCc--eEEEE
Confidence 444 47888888775 67654
No 401
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.85 E-value=0.0045 Score=35.63 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457 80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116 (389)
Q Consensus 80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 116 (389)
...|..++|+|.. ++||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~m--dLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTM--DLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCC--CEEEEEECCCeEEEEEC-CCcC
Confidence 4569999999999 79999999999999998 4544
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.81 E-value=0.18 Score=40.01 Aligned_cols=222 Identities=11% Similarity=0.076 Sum_probs=119.2
Q ss_pred CeEEEEecCCeEEEEeCCCceeee-eecCCCCcEEEEEEeCCCCCCEEEEE-ecCCeEEEEEcc--CCeEEEEEEc----
Q 016457 51 SLMAVSLSTNVVKLYSPVTGQYSG-ECKGHSSTVNQISFSGPSTPHVLHSC-SSDGTIRAWDTR--SFHEVWSVTA---- 122 (389)
Q Consensus 51 ~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~iwd~~--~~~~~~~~~~---- 122 (389)
.++.+--..+.|.-||..+.+... ++.+. ++..+.+--.+.++.++.+ +..-.|.-||.. ......++..
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 455555556777778887654332 23322 2334444333322344443 333334556633 2223333111
Q ss_pred -CCCCeEEEEEeCCCCeEEEeec-C---------CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457 123 -GSQEIFCFSFGGSTDYLLAAGC-G---------SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL 191 (389)
Q Consensus 123 -~~~~v~~~~~~~~~~~l~~~~~-d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 191 (389)
.+...+.-..+|++++ +.+.. | |.++.|-.. ..+..+. ..-.--+.++|+.+.+.+.++-+.+-.
T Consensus 106 ~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIW-NCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred HHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccC--CCceeee-hhccCCccccccccCcEEEEEccCceE
Confidence 1345566677888777 44433 2 344444322 1222222 222334678898887656667777778
Q ss_pred EEEEe--cCCCCCC-Cccceeeec---cC-CceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457 192 ICTFD--TGGDIND-DDLLESVIN---VG-TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW 264 (389)
Q Consensus 192 i~i~d--~~~~~~~-~~~~~~~~~---~~-~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 264 (389)
|.-|| ..++... ...+..+.. .+ -....++.. .+|.+.++.-..++|..+|..+|+.+.++.-.
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-------- 252 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-TEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-------- 252 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-cCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------
Confidence 87777 4444311 111211211 11 122345555 56777888888889999999999999998863
Q ss_pred cCCCCCceeeecccCCCCeEEEEEecC
Q 016457 265 TLDDVDYFVDCHYPGEGENLWVIGGTG 291 (389)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~ 291 (389)
...+++++|--.+-.++.+++..
T Consensus 253 ----t~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 253 ----TPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred ----CCceEEEEecCCCccEEEEEehh
Confidence 37899999975432223444433
No 403
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.77 E-value=0.57 Score=45.18 Aligned_cols=220 Identities=11% Similarity=0.013 Sum_probs=117.7
Q ss_pred cCCCCeEEEEecCc-----eeeeeecCcceEEEe--ecC--CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEE
Q 016457 17 CDNVNSIKRFGLKN-----SIQTNFGDDYVFEIV--PKN--DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQIS 87 (389)
Q Consensus 17 ~~~~~~i~~w~~~~-----~~~~~~~~~~v~~~~--~~~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~ 87 (389)
+..||++++..-+- ....+.|-..++.+. +.+ |. +|+.+-. +.-++..+...-......+-......+.
T Consensus 378 a~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e~ee~~~~gf~~~~~Tif 455 (1096)
T KOG1897|consen 378 AFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEEVEETEDPGFSTDEQTIF 455 (1096)
T ss_pred CCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCc-EEEEEec-cceEEEEEccceEEeccccccccCceEE
Confidence 44679999988652 222334455666666 443 33 6666553 3445555442211112222223333343
Q ss_pred EeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeeccc
Q 016457 88 FSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHV 167 (389)
Q Consensus 88 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (389)
.+.-.. +.|+=...+ .||+++-. ..+..+... ..++....+.+...++.++.++.+...++..............
T Consensus 456 ~S~i~g-~~lvQvTs~-~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e 530 (1096)
T KOG1897|consen 456 CSTING-NQLVQVTSN-SIRLVSSA--GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFE 530 (1096)
T ss_pred EEccCC-ceEEEEecc-cEEEEcch--hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheec
Confidence 333221 334433333 47777643 233444443 4444444444667888888888888888876653333222345
Q ss_pred CCeeEEEEecC--CCC---eEEEEeCCCcEEEEecCCCCCCCccceeeec---cCCceeeEEEecCCCcEEEEEecCCcE
Q 016457 168 EDVTQVHFVPN--NQN---KVVSASVDGLICTFDTGGDINDDDLLESVIN---VGTSVGKVGFFGETNKHLWCLTHIETL 239 (389)
Q Consensus 168 ~~v~~~~~~~~--~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~d~~i 239 (389)
..|.|+.++|. +++ +++.|..+..+.+.-..... ......... .+..|.-..+- .+..+|+++..||.+
T Consensus 531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~--~~~~~~~l~~~~iPRSIl~~~~e-~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL--ILITHEQLSGEIIPRSILLTTFE-GDIHYLLVALGDGAL 607 (1096)
T ss_pred ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc--ceeeeeccCCCccchheeeEEee-ccceEEEEEcCCceE
Confidence 67999999976 444 78888877665554333110 011111111 22334444454 446799999999988
Q ss_pred EEEEcCC
Q 016457 240 SIWDWKD 246 (389)
Q Consensus 240 ~i~d~~~ 246 (389)
..|.+..
T Consensus 608 ~~fv~d~ 614 (1096)
T KOG1897|consen 608 LYFVLDI 614 (1096)
T ss_pred EEEEEEc
Confidence 7766543
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.71 E-value=0.3 Score=45.70 Aligned_cols=213 Identities=12% Similarity=0.072 Sum_probs=106.0
Q ss_pred CeEEEEecCce-eeeeec---CcceEEEeecCCCCeEEEEecC------CeEEEEeCCCceee--eeecCCCCcEEEEEE
Q 016457 21 NSIKRFGLKNS-IQTNFG---DDYVFEIVPKNDWSLMAVSLST------NVVKLYSPVTGQYS--GECKGHSSTVNQISF 88 (389)
Q Consensus 21 ~~i~~w~~~~~-~~~~~~---~~~v~~~~~~~~~~~l~~~~~d------~~i~iw~~~~~~~~--~~~~~~~~~v~~i~~ 88 (389)
..+..+|.... ...+.. ...-.+++.. ++...++|+.+ ..+..||..+++-. ..+....... +++.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE
Confidence 45666666532 222222 2233444444 34688888888 36778888766522 2222222222 2333
Q ss_pred eCCCCCCEEEEEecCCe-----EEEEEccCCeEE--EEEEcCCCCeEEEEEeCCCCeEEEeecC------CeEEEEECcC
Q 016457 89 SGPSTPHVLHSCSSDGT-----IRAWDTRSFHEV--WSVTAGSQEIFCFSFGGSTDYLLAAGCG------SQIQFWDWRN 155 (389)
Q Consensus 89 ~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~ 155 (389)
. ++ .+.++||.||. +-.||..+.+-. ..+.......-.+.+ ++...++||.+ .++..||..+
T Consensus 379 l-~g--~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 379 L-DG--KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred E-CC--EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCC
Confidence 3 45 58889998874 667777654432 111111122222223 45555556543 4678899887
Q ss_pred CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc-----EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457 156 KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL-----ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL 230 (389)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 230 (389)
++-...-.......-..++... + .+++.|+.|+. |..||..+.. ...+ ........-..++. -++...
T Consensus 454 ~~W~~~~~M~~~R~~~g~a~~~-~-~iYvvGG~~~~~~~~~VE~ydp~~~~--W~~v-~~m~~~rs~~g~~~--~~~~ly 526 (571)
T KOG4441|consen 454 NTWTLIAPMNTRRSGFGVAVLN-G-KIYVVGGFDGTSALSSVERYDPETNQ--WTMV-APMTSPRSAVGVVV--LGGKLY 526 (571)
T ss_pred CceeecCCcccccccceEEEEC-C-EEEEECCccCCCccceEEEEcCCCCc--eeEc-ccCccccccccEEE--ECCEEE
Confidence 6532221100111122234333 3 38888887763 6778888542 1222 11112222223333 356677
Q ss_pred EEEecCC-----cEEEEEcCCC
Q 016457 231 WCLTHIE-----TLSIWDWKDG 247 (389)
Q Consensus 231 ~~~~~d~-----~i~i~d~~~~ 247 (389)
++|+.|+ +|..||..+.
T Consensus 527 ~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 527 AVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEecccCccccceeEEcCCCCC
Confidence 8888776 4555555443
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.047 Score=52.90 Aligned_cols=149 Identities=10% Similarity=-0.044 Sum_probs=93.2
Q ss_pred CCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceee-----eee-----ecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457 124 SQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVA-----CLE-----ESHVEDVTQVHFVPNNQNKVVSASVDGL 191 (389)
Q Consensus 124 ~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~-----~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 191 (389)
..++..+...++....++... +-.|..||+++...-. -+. ........++.|+|.-+...+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 345555666656544444333 4489999998643211 010 0123456788999987666777888999
Q ss_pred EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCc
Q 016457 192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDY 271 (389)
Q Consensus 192 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (389)
|++..+.- ..............++++|+ +.|+.+++|-..|++.-|... .+....+...... ....
T Consensus 180 l~V~~~~~----~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~--------e~yr 245 (1405)
T KOG3630|consen 180 LRVKSTKQ----LAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE--------ENYR 245 (1405)
T ss_pred hhhhhhhh----hhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecc-cceeecccCCCcC--------CCcc
Confidence 99887762 12222223445678999999 788899999999999988754 4444444332211 2367
Q ss_pred eeeecccCCCCeEEEEE
Q 016457 272 FVDCHYPGEGENLWVIG 288 (389)
Q Consensus 272 i~~~~~~~~~~~~~l~~ 288 (389)
|.+++|-.... |++.
T Consensus 246 vl~v~Wl~t~e--flvv 260 (1405)
T KOG3630|consen 246 VLSVTWLSTQE--FLVV 260 (1405)
T ss_pred eeEEEEeccee--EEEE
Confidence 88999987655 5443
No 406
>PHA03098 kelch-like protein; Provisional
Probab=96.39 E-value=0.32 Score=45.55 Aligned_cols=185 Identities=10% Similarity=0.047 Sum_probs=85.4
Q ss_pred CCCCeEEEEecCC------eEEEEeCCCceeee--eecCCCCcEEEEEEeCCCCCCEEEEEecC-----CeEEEEEccCC
Q 016457 48 NDWSLMAVSLSTN------VVKLYSPVTGQYSG--ECKGHSSTVNQISFSGPSTPHVLHSCSSD-----GTIRAWDTRSF 114 (389)
Q Consensus 48 ~~~~~l~~~~~d~------~i~iw~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 114 (389)
.++..++.|+.++ .+..||..+.+-.. .+....... +++.. ++ .+++.||.+ ..+..||..+.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~-~~--~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVF-NN--RIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEE-CC--EEEEEeCCCCCEecceEEEEcCCCC
Confidence 3455667776532 57788877654322 111111122 22222 44 577777765 34677887765
Q ss_pred eEEEE--EEcCCCCeEEEEEeCCCCeEEEeecC------CeEEEEECcCCceee--eeeecccCCeeEEEEecCCCCeEE
Q 016457 115 HEVWS--VTAGSQEIFCFSFGGSTDYLLAAGCG------SQIQFWDWRNKKQVA--CLEESHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 115 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~ 184 (389)
+-... +....... +++.. ++..++.||.+ ..+..||+.+.+-.. .+. ....-.+++.. ++ .+++
T Consensus 369 ~W~~~~~lp~~r~~~-~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r~~~~~~~~-~~-~iyv 442 (534)
T PHA03098 369 KWREEPPLIFPRYNP-CVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISHYGGCAIYH-DG-KIYV 442 (534)
T ss_pred ceeeCCCcCcCCccc-eEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--ccccCceEEEE-CC-EEEE
Confidence 43221 11111111 22222 44455555531 468889987654321 111 11111223332 34 3667
Q ss_pred EEeCC--------CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-----CcEEEEEcCCC
Q 016457 185 SASVD--------GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-----ETLSIWDWKDG 247 (389)
Q Consensus 185 ~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~ 247 (389)
.|+.+ ..+.+||..+.. ...+.... ....-.+++.. ++.+++.|+.+ +.+.+||..+.
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNK--WTELSSLN-FPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCc--eeeCCCCC-cccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 77643 238888887542 11111111 11111122222 45566666654 35677776654
No 407
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.69 Score=43.28 Aligned_cols=184 Identities=12% Similarity=0.087 Sum_probs=96.8
Q ss_pred CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE----EcCCCCeEEEEEeC
Q 016457 59 TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV----TAGSQEIFCFSFGG 134 (389)
Q Consensus 59 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~ 134 (389)
--.|+||+.. |+++..+.-....+-.+.|+.+. .|+....+|++.+|++- |+.+... ......|..+.+.
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e---eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f- 136 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE---ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFF- 136 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc---eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEe-
Confidence 3468899865 77777665444478889999765 78888999999999975 3332221 1122334444443
Q ss_pred CCCeEEEeecCCeEEEE-ECcCCceeeeeee--cccCCeeEEEEecCCCCeEEEEeCCCc--EEEEecCCCCCCCcccee
Q 016457 135 STDYLLAAGCGSQIQFW-DWRNKKQVACLEE--SHVEDVTQVHFVPNNQNKVVSASVDGL--ICTFDTGGDINDDDLLES 209 (389)
Q Consensus 135 ~~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~ 209 (389)
.++..+... +|.+.+- +... ..+.++.. ....+-+|-...+++.+......-+.. ..++-.... ......
T Consensus 137 ~~GVavlt~-~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~---~~q~~~ 211 (829)
T KOG2280|consen 137 HNGVAVLTV-SGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES---RVQLHA 211 (829)
T ss_pred cCceEEEec-CCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc---cccccc
Confidence 233333333 3444433 3322 12222221 112222333333332111111111100 111111111 111222
Q ss_pred eeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457 210 VINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE 254 (389)
Q Consensus 210 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 254 (389)
+....+.+..+..+ ++..+|+.-...|.|.+-+....+....+.
T Consensus 212 ~~~~~~~~~ki~VS-~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 212 LSWPNSSVVKISVS-PNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cCCCCceEEEEEEc-CCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 22234677888888 788899999999999998887777666665
No 408
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.58 Score=43.77 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=91.9
Q ss_pred CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee---ecccCCeeEEEEecCC
Q 016457 103 DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE---ESHVEDVTQVHFVPNN 179 (389)
Q Consensus 103 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~ 179 (389)
--.|+|+++ +|+.+..+......+..+.|+ +...|++...+|++++|++- ++.+.... +.....|....+..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs-~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWS-DDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeeccc-CCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence 345888886 477776665555689999999 78899999999999999975 33322211 1223345555555555
Q ss_pred CCeEEEEeCCCcEEEE-ecCCCCCCCccceeeec---cCCceeeEEEecCCCcEEEEEecCCc--EEEEEcCCC-ceeEE
Q 016457 180 QNKVVSASVDGLICTF-DTGGDINDDDLLESVIN---VGTSVGKVGFFGETNKHLWCLTHIET--LSIWDWKDG-QNVAS 252 (389)
Q Consensus 180 ~~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~-~~~~~ 252 (389)
+++-..+|.+.+- +.... ....... ...+-.+....++.........-+-. ..++-.... .....
T Consensus 140 ---Vavlt~~g~v~~i~~~~~~-----~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 140 ---VAVLTVSGQVILINGVEEP-----KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA 211 (829)
T ss_pred ---eEEEecCCcEEEEcCCCcc-----hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence 3333334554443 33311 1111111 11111222222222111111111100 011111111 01111
Q ss_pred eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 253 FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
+.. ....+..+..||+.+ +|+--...|.|.+-+.+..+.
T Consensus 212 ~~~------------~~~~~~ki~VS~n~~--~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 212 LSW------------PNSSVVKISVSPNRR--FLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred cCC------------CCceEEEEEEcCCcc--eEEEEecCCcEEEEecchhhh
Confidence 111 125678899999988 788888899999988876543
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.16 E-value=0.69 Score=39.23 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=76.3
Q ss_pred CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEEC-cCC
Q 016457 78 GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDW-RNK 156 (389)
Q Consensus 78 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~ 156 (389)
.-...+..+..++++ .+++++..-..+.-||.-...-...-+.....|..|.|.|++...+ .+..|.|+.=+. ...
T Consensus 142 ~~~gs~~~~~r~~dG--~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 142 ETSGSINDITRSSDG--RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDG 218 (302)
T ss_dssp S----EEEEEE-TTS---EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEE
T ss_pred CCcceeEeEEECCCC--cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCc
Confidence 345678889889998 6777776655566777543222222222368999999997755444 557788888772 222
Q ss_pred ceeee-eee--cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE
Q 016457 157 KQVAC-LEE--SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL 233 (389)
Q Consensus 157 ~~~~~-~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 233 (389)
+.-.. +.. ...-.+..++|.+++. ..++|+ .|.+. .....++ .-+..............+.|.++ +.-++.
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l~-~S~DgGk-tW~~~~~~~~~~~n~~~i~f~~~--~~gf~l 292 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTLL-VSTDGGK-TWQKDRVGENVPSNLYRIVFVNP--DKGFVL 292 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-EE-EESSTTS-S-EE-GGGTTSSS---EEEEEET--TEEEEE
T ss_pred cccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccEE-EeCCCCc-cceECccccCCCCceEEEEEcCC--CceEEE
Confidence 21111 110 1233478999998874 666555 55443 3444332 22222222234556788888734 355666
Q ss_pred ecCCcEEEE
Q 016457 234 THIETLSIW 242 (389)
Q Consensus 234 ~~d~~i~i~ 242 (389)
+.+|.|--|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 677876544
No 410
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.11 E-value=0.6 Score=43.64 Aligned_cols=111 Identities=8% Similarity=0.083 Sum_probs=70.5
Q ss_pred eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec-CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc-----C-
Q 016457 41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR-----S- 113 (389)
Q Consensus 41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~-----~- 113 (389)
+.-+.-+.-++..++-+....+.|||...+.....-. ...+.|.++.|.....++.+++.|....|.++.-. .
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3344444444444444445689999998876433222 35788999999765555788888999999998532 1
Q ss_pred ---CeEEEEE--EcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEEC
Q 016457 114 ---FHEVWSV--TAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDW 153 (389)
Q Consensus 114 ---~~~~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 153 (389)
..++..+ ..+ ..+|.+..|.++| .+++++. +.+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSG-NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCC-eEEEEeC-CEEEEECC
Confidence 1233333 333 4789999999555 4444332 68888874
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.10 E-value=0.63 Score=43.51 Aligned_cols=123 Identities=10% Similarity=0.104 Sum_probs=73.6
Q ss_pred EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEe--cCCCCeEEEEeCCCcEEEEe
Q 016457 119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFV--PNNQNKVVSASVDGLICTFD 196 (389)
Q Consensus 119 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~d~~i~i~d 196 (389)
++...-..+.-+.-+..++.-++-.....+.|||.+.+.....-.....+.|..+.|. |++. .+++.+..+.|.+|-
T Consensus 24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEE
Confidence 3444444555555554444444444456899999998875443332347889999985 6775 666777788888875
Q ss_pred cC-----CCCCCCccceee--ecc-CCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457 197 TG-----GDINDDDLLESV--INV-GTSVGKVGFFGETNKHLWCLTHIETLSIWDWK 245 (389)
Q Consensus 197 ~~-----~~~~~~~~~~~~--~~~-~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 245 (389)
-. ...+....++.+ ..+ ..+|.+..|. ++|.++ +|+ ++.+.|+|-.
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-~~G~Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL-KDGTLV-VGS-GNQLFVFDKW 156 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEe-cCCeEE-EEe-CCEEEEECCC
Confidence 42 222222333333 222 3678899998 666544 333 3578888743
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.09 E-value=0.75 Score=39.03 Aligned_cols=233 Identities=13% Similarity=0.118 Sum_probs=103.1
Q ss_pred ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec---CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC-Ce
Q 016457 40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK---GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-FH 115 (389)
Q Consensus 40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~ 115 (389)
...++.|..+ ..+++| ..+ +.+...+.|+.-..+. .-......+....++ ....++..|.| |...+ ++
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~---~~~l~~~~G~i--y~T~DgG~ 134 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDG---SAELAGDRGAI--YRTTDGGK 134 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETT---EEEEEETT--E--EEESSTTS
T ss_pred eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC---cEEEEcCCCcE--EEeCCCCC
Confidence 3567777653 344444 455 4444445554333321 112233444444444 33334455543 43332 22
Q ss_pred E-EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457 116 E-VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT 194 (389)
Q Consensus 116 ~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 194 (389)
. ..........+..+.-++++.+++++.......-||--...- ..........|..|.|.|++. +.+ ....|.|+.
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~ 211 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQF 211 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEE
T ss_pred CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCC-EEE-EeCCcEEEE
Confidence 2 222334457788888887777666665544556777432211 111113467899999999974 544 447888888
Q ss_pred EecCCCCCC-CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457 195 FDTGGDIND-DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV 273 (389)
Q Consensus 195 ~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (389)
=+....... .+.+.........+..++|. +++. +.+++..|.+ +.....|+.=+....... -...+.
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~-~~~~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~---------~~~n~~ 279 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYR-PPNE-IWAVGGSGTL-LVSTDGGKTWQKDRVGEN---------VPSNLY 279 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEES-SSS--EEEEESTT-E-EEESSTTSS-EE-GGGTT---------SSS---
T ss_pred ccCCCCccccccccCCcccCceeeEEEEec-CCCC-EEEEeCCccE-EEeCCCCccceECccccC---------CCCceE
Confidence 772211000 01111111223347888997 4444 5555566655 445555554433332111 235678
Q ss_pred eecccCCCCeEEEEEecCCceEEEE
Q 016457 274 DCHYPGEGENLWVIGGTGAGTVGYF 298 (389)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~dg~i~i~ 298 (389)
.+.|....+ -++.| .+|.|.-|
T Consensus 280 ~i~f~~~~~--gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVNPDK--GFVLG-QDGVLLRY 301 (302)
T ss_dssp EEEEEETTE--EEEE--STTEEEEE
T ss_pred EEEEcCCCc--eEEEC-CCcEEEEe
Confidence 888876654 23444 78877655
No 413
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.08 E-value=0.34 Score=34.94 Aligned_cols=117 Identities=10% Similarity=0.080 Sum_probs=75.9
Q ss_pred EEeecCCCCeEEEEecCCeEEEEeCCCce--------eeeeecCCCCcEEEEEEeC---CCCCCEEEEEecCCeEEEEEc
Q 016457 43 EIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--------YSGECKGHSSTVNQISFSG---PSTPHVLHSCSSDGTIRAWDT 111 (389)
Q Consensus 43 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--------~~~~~~~~~~~v~~i~~~~---~~~~~~l~s~~~dg~i~iwd~ 111 (389)
.-.|......|++++..|.|.|++..... .+..+. -...|++|+-.+ +...+.|+.|+.. .+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc
Confidence 34566666789999999999999876432 233333 456777776443 3333678887755 6899999
Q ss_pred cCCeEEEEEEcCCCCeEEEEEeC---CCCeEEEeecCCeEEEEECcCCceeeee
Q 016457 112 RSFHEVWSVTAGSQEIFCFSFGG---STDYLLAAGCGSQIQFWDWRNKKQVACL 162 (389)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 162 (389)
.....+..-.. .+.|.++.+-. ....++..|.+..|.-||..-.+...+.
T Consensus 81 ~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 87766544333 36777777632 2345666666688888887655544443
No 414
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.03 E-value=1.3 Score=42.73 Aligned_cols=76 Identities=21% Similarity=0.138 Sum_probs=52.5
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCC----------Cceee---eee--------cCCCCcEEEEEEeCCCC-CC
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV----------TGQYS---GEC--------KGHSSTVNQISFSGPST-PH 95 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~----------~~~~~---~~~--------~~~~~~v~~i~~~~~~~-~~ 95 (389)
.-.|..+.++|+|.+||..|..|. .|..+. .|+.. .++ ..+...|..+.|+|.+. ..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 346888899999999999997664 443332 11111 111 23456799999999751 25
Q ss_pred EEEEEecCCeEEEEEccCC
Q 016457 96 VLHSCSSDGTIRAWDTRSF 114 (389)
Q Consensus 96 ~l~s~~~dg~i~iwd~~~~ 114 (389)
.|+.-..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8888889999999999753
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.98 E-value=1.6 Score=41.99 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=51.3
Q ss_pred CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC----------CeE---EEEEE--------cCCCCeEEEEEeCC---C
Q 016457 81 STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS----------FHE---VWSVT--------AGSQEIFCFSFGGS---T 136 (389)
Q Consensus 81 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~---~~~~~--------~~~~~v~~~~~~~~---~ 136 (389)
-.|..|..+|+| .+|+..|..| |.|-.+.. ++. .+++. .+...|..+.|+|. +
T Consensus 85 f~v~~i~~n~~g--~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTG--SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCCC--CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 468899999999 6888888776 44444321 111 11221 22467889999986 5
Q ss_pred CeEEEeecCCeEEEEECcCC
Q 016457 137 DYLLAAGCGSQIQFWDWRNK 156 (389)
Q Consensus 137 ~~l~~~~~d~~i~iwd~~~~ 156 (389)
..|++-.+|+.+++||+...
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CeEEEEecCCEEEEEecCCC
Confidence 88999999999999999754
No 416
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.92 E-value=1.2 Score=39.79 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=86.0
Q ss_pred CEEEEEecCCeEEEEEccCCe-----EEEEEEcCCCCeEEEEEeC----CCCeEEEeecCCeEEEEECcCC--c------
Q 016457 95 HVLHSCSSDGTIRAWDTRSFH-----EVWSVTAGSQEIFCFSFGG----STDYLLAAGCGSQIQFWDWRNK--K------ 157 (389)
Q Consensus 95 ~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~--~------ 157 (389)
+.|++|+..|.++||+..... .+...+. +.+|..+.... .....++.=.-..+.+|.+... .
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-KDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEec-CCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 699999999999999986432 2223332 57888887542 2334555555678888887421 1
Q ss_pred -eeeeeeeccc--CCeeEEEEecCC----CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457 158 -QVACLEESHV--EDVTQVHFVPNN----QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL 230 (389)
Q Consensus 158 -~~~~~~~~~~--~~v~~~~~~~~~----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 230 (389)
.+..+. .|. .....++.-|-| +.++.+-+.||.+.+|+-+... .......---...+.|. +..+.+
T Consensus 117 ~~L~~~y-eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-----f~~~lp~~llPgPl~Y~-~~tDsf 189 (418)
T PF14727_consen 117 YQLELIY-EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-----FSRFLPDFLLPGPLCYC-PRTDSF 189 (418)
T ss_pred EEEEEEE-EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-----EEEEcCCCCCCcCeEEe-ecCCEE
Confidence 111222 232 233344443332 3588889999999999988321 12222111122345666 455678
Q ss_pred EEEecCCcEEEEEcC
Q 016457 231 WCLTHIETLSIWDWK 245 (389)
Q Consensus 231 ~~~~~d~~i~i~d~~ 245 (389)
++++.+..+.-|...
T Consensus 190 vt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 190 VTASSSWTLECYKYQ 204 (418)
T ss_pred EEecCceeEEEecHH
Confidence 888888888888753
No 417
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.91 E-value=0.81 Score=37.96 Aligned_cols=164 Identities=16% Similarity=0.101 Sum_probs=90.0
Q ss_pred CeeEEEEecCCCCeEEEEe---CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEE-c
Q 016457 169 DVTQVHFVPNNQNKVVSAS---VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWD-W 244 (389)
Q Consensus 169 ~v~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d-~ 244 (389)
.+.+.++++++. .++... ....++++..... ..... ....+..-.|. +++...+....+....++. .
T Consensus 25 ~~~s~AvS~dg~-~~A~v~~~~~~~~L~~~~~~~~------~~~~~-~g~~l~~PS~d-~~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGS-RVAAVSEGDGGRSLYVGPAGGP------VRPVL-TGGSLTRPSWD-PDGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCC-eEEEEEEcCCCCEEEEEcCCCc------ceeec-cCCcccccccc-CCCCEEEEEcCCCceEEEEec
Confidence 688999999996 655544 3344555554421 12111 33367777888 5566555555555555553 3
Q ss_pred CCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE-ecCCceEEEEEeccCCcc---ccCCCeEEEecccc
Q 016457 245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG-GTGAGTVGYFPVNYGGAA---TIGPPEAVLVGGHT 320 (389)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-g~~dg~i~i~~~~~~~~~---~~~~~~~~~~~~h~ 320 (389)
.++.....-..... ....|..+.+||||.++.++. ...++.|++=-+...... .+..++.... ...
T Consensus 96 ~~g~~~~~~v~~~~---------~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~ 165 (253)
T PF10647_consen 96 ASGTGEPVEVDWPG---------LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLL 165 (253)
T ss_pred CCCcceeEEecccc---------cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-ccc
Confidence 33332221111100 112799999999999876555 334577888776644331 1112222221 223
Q ss_pred eeeeeccCCCcccCCCCCCCceeEEEecCCCe-EEE-EeccC
Q 016457 321 AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGR-LCC-WLSDD 360 (389)
Q Consensus 321 ~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~-v~i-W~~~~ 360 (389)
..+.++ +|.+++.+++.+...+. +.. ..++.
T Consensus 166 ~~v~~v---------~W~~~~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 166 SDVTDV---------AWSDDSTLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred Ccceee---------eecCCCEEEEEeCCCCCceeEEEEccC
Confidence 466666 89999988777654333 433 44443
No 418
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.89 E-value=1.1 Score=39.47 Aligned_cols=182 Identities=13% Similarity=0.060 Sum_probs=91.0
Q ss_pred cCCCCeEEEEecCc------eeeeeec--------CcceEEEeecCCCCeEEEEecC------CeEEEEeCCCceeeeee
Q 016457 17 CDNVNSIKRFGLKN------SIQTNFG--------DDYVFEIVPKNDWSLMAVSLST------NVVKLYSPVTGQYSGEC 76 (389)
Q Consensus 17 ~~~~~~i~~w~~~~------~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~d------~~i~iw~~~~~~~~~~~ 76 (389)
+-..+.|.+.|+.. ..+++.. -..-..+-.-|+|+.++++-.| |-+.++|-++.+....+
T Consensus 94 gL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~W 173 (461)
T PF05694_consen 94 GLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRW 173 (461)
T ss_dssp BTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE-
T ss_pred eeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccccccee
Confidence 33557788888752 2333331 1222334445788888776432 46888888877777666
Q ss_pred cCC---CCcEEEEEEeCCCCCCEEEEEec--------------------CCeEEEEEccCCeEEEEEEcCCC--CeEEEE
Q 016457 77 KGH---SSTVNQISFSGPSTPHVLHSCSS--------------------DGTIRAWDTRSFHEVWSVTAGSQ--EIFCFS 131 (389)
Q Consensus 77 ~~~---~~~v~~i~~~~~~~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~ 131 (389)
... ..--..+-|.|.. +.++|... ..++.+||+.+.+.++++..... ....+.
T Consensus 174 e~~~~~~~~gYDfw~qpr~--nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvR 251 (461)
T PF05694_consen 174 EKDRGPQPFGYDFWYQPRH--NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVR 251 (461)
T ss_dssp -SB-TT------EEEETTT--TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEE
T ss_pred ccCCCCCCCCCCeEEcCCC--CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEE
Confidence 542 2234667778876 67777543 45799999999999999987643 355677
Q ss_pred Ee--CCCCeEEEeec-CCeEEEEEC-cCCc----eeeeeee---------c-------ccCCeeEEEEecCCCCeEEEEe
Q 016457 132 FG--GSTDYLLAAGC-GSQIQFWDW-RNKK----QVACLEE---------S-------HVEDVTQVHFVPNNQNKVVSAS 187 (389)
Q Consensus 132 ~~--~~~~~l~~~~~-d~~i~iwd~-~~~~----~~~~~~~---------~-------~~~~v~~~~~~~~~~~~l~~~~ 187 (389)
|. |...+=++++. ..+|..|-- ..++ .+.++.. . -..-|+.|.++.+++.+.++.-
T Consensus 252 flH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W 331 (461)
T PF05694_consen 252 FLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW 331 (461)
T ss_dssp E-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET
T ss_pred ecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc
Confidence 64 44455444443 566665543 3332 2222220 0 0245799999999985566666
Q ss_pred CCCcEEEEecCCC
Q 016457 188 VDGLICTFDTGGD 200 (389)
Q Consensus 188 ~d~~i~i~d~~~~ 200 (389)
..|.|+.||+...
T Consensus 332 ~~GdvrqYDISDP 344 (461)
T PF05694_consen 332 LHGDVRQYDISDP 344 (461)
T ss_dssp TTTEEEEEE-SST
T ss_pred cCCcEEEEecCCC
Confidence 7999999999843
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=95.84 E-value=1.1 Score=41.18 Aligned_cols=182 Identities=7% Similarity=-0.061 Sum_probs=83.2
Q ss_pred CCCeEEEEecCC-----eEEEEeCCCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEecC--CeEEEEEccCCeEEE-
Q 016457 49 DWSLMAVSLSTN-----VVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSD--GTIRAWDTRSFHEVW- 118 (389)
Q Consensus 49 ~~~~l~~~~~d~-----~i~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~- 118 (389)
++.++++|+.++ .+..||..+++-. ..+....... +++.. ++ .+.+.||.+ .++..||..+++-..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~~-~~--~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVPA-NN--KLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEEE-CC--EEEEECCcCCCCceEEEECCCCeEEEC
Confidence 455667777542 5777887765422 2222111112 22222 45 577777754 357788876554322
Q ss_pred -EEEcCCCCeEEEEEeCCCCeEEEeecC---CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457 119 -SVTAGSQEIFCFSFGGSTDYLLAAGCG---SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT 194 (389)
Q Consensus 119 -~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 194 (389)
.+....... +++.. ++...+.||.+ ..+..||.++.+-...-.......-.+++ .-++. +.+.| |.+.+
T Consensus 347 ~~l~~~r~~~-~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~-IYv~G---G~~e~ 419 (480)
T PHA02790 347 PSLLKPRCNP-AVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRR-LFLVG---RNAEF 419 (480)
T ss_pred CCCCCCCccc-EEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCE-EEEEC---CceEE
Confidence 121111112 22222 44445555543 35778888765432211101111111222 22342 55555 35778
Q ss_pred EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-----CcEEEEEcCC
Q 016457 195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-----ETLSIWDWKD 246 (389)
Q Consensus 195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~ 246 (389)
||..++. ...+..+. ....-.+++.. ++++.++|+.+ ..+..||..+
T Consensus 420 ydp~~~~--W~~~~~m~-~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 420 YCESSNT--WTLIDDPI-YPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ecCCCCc--EeEcCCCC-CCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 8887542 22222211 11112233333 45677777754 2455555543
No 420
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.81 E-value=0.93 Score=37.83 Aligned_cols=239 Identities=16% Similarity=0.175 Sum_probs=130.9
Q ss_pred eEEEeecCCCCeEEEEecCCeEEEEeCC------Cc-eeeeeecC-----CCCcEEEEEEeCCCC----------CCEEE
Q 016457 41 VFEIVPKNDWSLMAVSLSTNVVKLYSPV------TG-QYSGECKG-----HSSTVNQISFSGPST----------PHVLH 98 (389)
Q Consensus 41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~~----------~~~l~ 98 (389)
-+.|+++|.+.+-++....+...+||.. .. .++-.+.. .....+.+.|+.... ...++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4578999988666666667899999986 12 22333331 224577777774321 12467
Q ss_pred EEecCCeEEEEEccCCeE-----EEEEEcC-CCC-eEEEEEeC--CCCeEEEeec-CCeEEEEECcCCcee--eeeee--
Q 016457 99 SCSSDGTIRAWDTRSFHE-----VWSVTAG-SQE-IFCFSFGG--STDYLLAAGC-GSQIQFWDWRNKKQV--ACLEE-- 164 (389)
Q Consensus 99 s~~~dg~i~iwd~~~~~~-----~~~~~~~-~~~-v~~~~~~~--~~~~l~~~~~-d~~i~iwd~~~~~~~--~~~~~-- 164 (389)
.+++||+|.-|...-+.. ...+... ... -..+++.. .+.+|+++-. .++|.+||-.-.+.. ..+.+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 789999999998542211 1222211 233 34555543 3567777766 799999985422211 01110
Q ss_pred --c-----------ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC---CceeeEEEec----
Q 016457 165 --S-----------HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG---TSVGKVGFFG---- 224 (389)
Q Consensus 165 --~-----------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~i~~~~~~~---- 224 (389)
. ..-.|+-..-.++. +.=+.|..-|.|-+||+... .++++ .+. ...+.|+..|
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~-----l~~r~-as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQ-----LLRRV-ASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCc-----EEEEe-ccCCcccCCceeeeChhhhC
Confidence 0 00011111112222 12233344578999999843 23333 222 2345565543
Q ss_pred -CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCC-----CCeEEEEEecCC
Q 016457 225 -ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGE-----GENLWVIGGTGA 292 (389)
Q Consensus 225 -~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~g~~d 292 (389)
..+.+|+---.||+|..||..+++.+-.+.......- -...++.+.|-.. .+.+|+++|-.|
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi------~i~GLWgL~fGng~~~~~~ntLyFaAGp~d 325 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV------KVDGLWSLTFGNGVSGGSANYLYFTAGPDD 325 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeE------EecCeEEeeeCCCcCCCCcceEEEEeCCCC
Confidence 3466777777899999999999988777664321100 1245666777652 234555555443
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.71 E-value=0.27 Score=43.58 Aligned_cols=86 Identities=19% Similarity=0.127 Sum_probs=61.2
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE-EEEeCCCC---------------CC-EEEEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ-ISFSGPST---------------PH-VLHSC 100 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~-i~~~~~~~---------------~~-~l~s~ 100 (389)
...+.+++.+|++++.|+...-|.|.|+|+.++..++.++|-.+.-.. +.....+. .. +++-+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 566889999999998888877899999999999888888775543111 11111110 01 33446
Q ss_pred ecCCeEEEEEccCCeEEEEEEcC
Q 016457 101 SSDGTIRAWDTRSFHEVWSVTAG 123 (389)
Q Consensus 101 ~~dg~i~iwd~~~~~~~~~~~~~ 123 (389)
-.-|.|.||.++++..+..+...
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEeC
Confidence 67889999999999888877754
No 422
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.71 E-value=0.0012 Score=57.31 Aligned_cols=149 Identities=14% Similarity=0.197 Sum_probs=102.4
Q ss_pred EEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457 42 FEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121 (389)
Q Consensus 42 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 121 (389)
....|-|.+.-++.++.+..+..||- .++...... .+....+++|..++. ..++.+-..+.+.+||+.+.... .+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegd-vlavlAek~~piylwd~n~eytq-qLE 113 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGD-VLAVLAEKTGPIYLWDVNSEYTQ-QLE 113 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccc-hhhhhhhcCCCeeechhhhhhHH-HHh
Confidence 34557777767888988999999994 355555544 345566788888774 45666777889999999754321 222
Q ss_pred c-CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457 122 A-GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197 (389)
Q Consensus 122 ~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (389)
. ....-.-+.|++....++.+-..|.+.+++..+.+.+...- .|...++++++.+.+ +.+.++.|..+.+-..
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd--~vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLED--YVILCDCDNTLSVTTQ 187 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccc--eeeecCcHHHHHHhhh
Confidence 1 12222226788777777777778999999988766655553 488999999999986 5666766665544433
No 423
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.64 E-value=2.4 Score=41.30 Aligned_cols=208 Identities=10% Similarity=0.069 Sum_probs=111.6
Q ss_pred CCeEEEeecCCeEEEEECcCCceeeeeeecccC--------CeeEEEEec----------------CCCCeEEEEeCCCc
Q 016457 136 TDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE--------DVTQVHFVP----------------NNQNKVVSASVDGL 191 (389)
Q Consensus 136 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~~l~~~~~d~~ 191 (389)
++.+++++.++.|.-.|.++++.+.++. .... ....+++.. .+ ..++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d-~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~-~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFD-PKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCA-RRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEc-CCCCcccccccccccceEEecCCcccccccccccccccC-CEEEEecCCCe
Confidence 6788888888999999999999988876 2111 012233321 22 27888889999
Q ss_pred EEEEecCCCCCCCccceeeeccCCc----------------eee-EEEecCCCcEEEEEec----------CCcEEEEEc
Q 016457 192 ICTFDTGGDINDDDLLESVINVGTS----------------VGK-VGFFGETNKHLWCLTH----------IETLSIWDW 244 (389)
Q Consensus 192 i~i~d~~~~~~~~~~~~~~~~~~~~----------------i~~-~~~~~~~~~~l~~~~~----------d~~i~i~d~ 244 (389)
+.-.|.++++.. -.+ ..+.. +++ -... + ..+++++. +|.|+-+|.
T Consensus 272 LiALDA~TGk~~----W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~--~-g~VIvG~~v~d~~~~~~~~G~I~A~Da 343 (764)
T TIGR03074 272 LIALDADTGKLC----EDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVA--G-TTVVIGGRVADNYSTDEPSGVIRAFDV 343 (764)
T ss_pred EEEEECCCCCEE----EEe-cCCCceeeecccCcCCCcccccccCCEEE--C-CEEEEEecccccccccCCCcEEEEEEC
Confidence 999999877521 111 11100 111 1111 2 25555543 588999999
Q ss_pred CCCceeEEeecccccc------cCCccCCCCCceeeecccCCCCeEEEEEec----------------CCceEEEEEecc
Q 016457 245 KDGQNVASFENARSLA------SDSWTLDDVDYFVDCHYPGEGENLWVIGGT----------------GAGTVGYFPVNY 302 (389)
Q Consensus 245 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~----------------~dg~i~i~~~~~ 302 (389)
++|+.+-.+....... ...|..+....=...++.+....+|+-+|. ..+.|.-.|.++
T Consensus 344 ~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~T 423 (764)
T TIGR03074 344 NTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATT 423 (764)
T ss_pred CCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCC
Confidence 9999987776321111 111111111111234455554433333321 124566667777
Q ss_pred CCccccCCCeEEEecccceeeeec-cCCCcccCCCCCC-Cce---eEEEecCCCeEEEEeccCC
Q 016457 303 GGAATIGPPEAVLVGGHTAVVRSV-LPMPSVQGRPAQS-HGI---FGWTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 303 ~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~s~-~~~---~l~s~~~dg~v~iW~~~~~ 361 (389)
++. .-.+...| ..+.+. .+....+ ..+.. +|+ .++.++.+|.+.+.|..++
T Consensus 424 Gk~------~W~~Q~~~-hD~WD~D~~~~p~L-~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG 479 (764)
T TIGR03074 424 GKE------RWVFQTVH-HDLWDMDVPAQPSL-VDLPDADGTTVPALVAPTKQGQIYVLDRRTG 479 (764)
T ss_pred Cce------EEEecccC-CccccccccCCceE-EeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence 765 22222111 112222 1222222 02222 553 7899999999999999877
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.64 E-value=1.8 Score=41.17 Aligned_cols=144 Identities=17% Similarity=0.324 Sum_probs=89.1
Q ss_pred CCeEEEEecCCeEEEEeCCCcee------eeeec----------------CCCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457 50 WSLMAVSLSTNVVKLYSPVTGQY------SGECK----------------GHSSTVNQISFSGPSTPHVLHSCSSDGTIR 107 (389)
Q Consensus 50 ~~~l~~~~~d~~i~iw~~~~~~~------~~~~~----------------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~ 107 (389)
+.++++|. .+.|.||++..-.. ...+. ...-.|+.|....-+..+.|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56777766 78999998753211 11110 011235555554434347999999999999
Q ss_pred EEEccC-------C-------------eEEEEEEcCCCCeEEEEEe--CCCCeEEEeecCCeEEEEECcCC--cee--ee
Q 016457 108 AWDTRS-------F-------------HEVWSVTAGSQEIFCFSFG--GSTDYLLAAGCGSQIQFWDWRNK--KQV--AC 161 (389)
Q Consensus 108 iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~--~~~--~~ 161 (389)
+|.+.+ . ++...++. ...+++++++ .....+++++....|.||-.... +.. ..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997631 1 01222332 4689999997 55555666666677777654432 111 12
Q ss_pred eeecccCCeeEEEEecCC--CC---eEEEEeCCCcEEEEec
Q 016457 162 LEESHVEDVTQVHFVPNN--QN---KVVSASVDGLICTFDT 197 (389)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~--~~---~l~~~~~d~~i~i~d~ 197 (389)
. .+...|-+|.|.++. +. .+++++-.|.+.+|++
T Consensus 207 ~--~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 H--QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred c--ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2 356678899998765 22 6788889999999888
No 425
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.61 E-value=1.6 Score=39.01 Aligned_cols=145 Identities=10% Similarity=0.133 Sum_probs=87.6
Q ss_pred CCCeEEEEecCCeEEEEeCCCce-----eeeeecCCCCcEEEEEEeC---CCCCCEEEEEecCCeEEEEEccC--Ce---
Q 016457 49 DWSLMAVSLSTNVVKLYSPVTGQ-----YSGECKGHSSTVNQISFSG---PSTPHVLHSCSSDGTIRAWDTRS--FH--- 115 (389)
Q Consensus 49 ~~~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~~~v~~i~~~~---~~~~~~l~s~~~dg~i~iwd~~~--~~--- 115 (389)
+...|++|+..|.++||+...+. .+...+ -..+|..++.-. ......||. -.-..+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34699999999999999986433 111222 456788877542 222124444 5566788888731 11
Q ss_pred ----EEEEEEcC--CCCeEEEEEeCC-----CCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457 116 ----EVWSVTAG--SQEIFCFSFGGS-----TDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 116 ----~~~~~~~~--~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 184 (389)
.+..+..| ......+++-|- ...+.+-+.||.+.+|+-+.......+. .---.-.+.+.+... .|+
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tD-sfv 190 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTD-SFV 190 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCC-EEE
Confidence 22233333 334444554432 2456666779999999965443333332 223344578888774 899
Q ss_pred EEeCCCcEEEEecC
Q 016457 185 SASVDGLICTFDTG 198 (389)
Q Consensus 185 ~~~~d~~i~i~d~~ 198 (389)
+++.+..+..|...
T Consensus 191 t~sss~~l~~Yky~ 204 (418)
T PF14727_consen 191 TASSSWTLECYKYQ 204 (418)
T ss_pred EecCceeEEEecHH
Confidence 99988889888764
No 426
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.52 E-value=1.7 Score=39.60 Aligned_cols=274 Identities=12% Similarity=0.052 Sum_probs=138.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCC-CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHS-STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 116 (389)
...|.++.++-.| .+.+|+.+| +..||..+++.++.-.... ..|..+.-.-.+ .|..|+.+| |.+.+.+..+.
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg---~LWVGTdqG-v~~~e~~G~~~ 237 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG---RLWVGTDQG-VYLQEAEGWRA 237 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC---cEEEEeccc-eEEEchhhccc
Confidence 6778888888887 567788777 7788888888776654433 677777666555 788888887 77777664222
Q ss_pred EEEEE-cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec-ccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457 117 VWSVT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES-HVEDVTQVHFVPNNQNKVVSASVDGLICT 194 (389)
Q Consensus 117 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 194 (389)
..-.. .....|..+.-. ..+.+..++..|..+.--.+.+-.+...+.. ..+.|.++..+.+| -+-+++.++.+++
T Consensus 238 sn~~~~lp~~~I~ll~qD-~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG--sLWv~t~~giv~~ 314 (671)
T COG3292 238 SNWGPMLPSGNILLLVQD-AQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG--SLWVGTYGGIVRY 314 (671)
T ss_pred cccCCCCcchheeeeecc-cCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCC--CEeeeccCceEEE
Confidence 11111 113445444443 3456666666555433222222111111111 12456677777777 4777777776665
Q ss_pred EecCCCCCCCccceeeeccCCce-eeEEEecC-CCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457 195 FDTGGDINDDDLLESVINVGTSV-GKVGFFGE-TNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF 272 (389)
Q Consensus 195 ~d~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (389)
-+-. ......+...++.+ ...+..|+ ....+.-...-|.+.+-+-.++..+......+ ...|
T Consensus 315 ~~a~-----w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~R-----------g~ni 378 (671)
T COG3292 315 LTAD-----WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLR-----------GMNI 378 (671)
T ss_pred ecch-----hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecc-----------cccc
Confidence 4332 11111121111111 11111110 01112222222344444555565555533322 1456
Q ss_pred eeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCe
Q 016457 273 VDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGR 352 (389)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 352 (389)
+.+++..+ .+++ .|+...-+..|+-.+ .+..+........++|..+ .-.|+++ |.-|+.+|.
T Consensus 379 t~~~~d~~-g~lW--lgs~q~GLsrl~n~n-----~~avlde~agl~ss~V~ai---------ved~dns-LWIGTs~Gl 440 (671)
T COG3292 379 TTTLEDSR-GRLW--LGSMQNGLSRLDNKN-----EWAVLDEDAGLPSSEVSAI---------VEDPDNS-LWIGTSGGL 440 (671)
T ss_pred chhhhccC-CcEE--EEecccchhhhccCC-----cccccccccCCcccceeee---------eecCCCC-EEEeccCCe
Confidence 66677764 4344 444443355555554 1122233322234566666 4556666 566776776
Q ss_pred EE
Q 016457 353 LC 354 (389)
Q Consensus 353 v~ 354 (389)
++
T Consensus 441 vk 442 (671)
T COG3292 441 VK 442 (671)
T ss_pred Ee
Confidence 54
No 427
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.45 E-value=0.46 Score=42.36 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=89.9
Q ss_pred CCCeEE-EEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCC-----CCEEEEEecCCeEEEEEcc-CCeEEEEEE
Q 016457 49 DWSLMA-VSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPST-----PHVLHSCSSDGTIRAWDTR-SFHEVWSVT 121 (389)
Q Consensus 49 ~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~-----~~~l~s~~~dg~i~iwd~~-~~~~~~~~~ 121 (389)
|..+|+ .|+....++-.|++.|+.+..+..|..- -+.|.|... +..-+.|-.+..|.-.|.+ .|..+...+
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 333433 4444567777889999999999877665 467777541 0123334445445445655 333333222
Q ss_pred cC----CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457 122 AG----SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197 (389)
Q Consensus 122 ~~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (389)
.. +....|..-. .++++++++..|.|++||-- +....+..++.+..|..+....+|. ++++.+ ...+.+-|+
T Consensus 556 sKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk-~ilaTC-k~yllL~d~ 631 (776)
T COG5167 556 SKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGK-HILATC-KNYLLLTDV 631 (776)
T ss_pred ehhccccccccccccc-cCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCc-EEEEee-cceEEEEec
Confidence 21 2333444433 67899999999999999943 4333333337788999999999997 554444 567888888
Q ss_pred C
Q 016457 198 G 198 (389)
Q Consensus 198 ~ 198 (389)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 7
No 428
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.37 E-value=0.083 Score=29.46 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=26.6
Q ss_pred CCeeEEEEecCCC--CeEEEEeCCCcEEEEecCC
Q 016457 168 EDVTQVHFVPNNQ--NKVVSASVDGLICTFDTGG 199 (389)
Q Consensus 168 ~~v~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~ 199 (389)
+.+.++.|+|... .+|+.+-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999997653 4888888889999999994
No 429
>PHA03098 kelch-like protein; Provisional
Probab=95.34 E-value=2 Score=40.23 Aligned_cols=145 Identities=10% Similarity=-0.036 Sum_probs=66.8
Q ss_pred CEEEEEecCC------eEEEEEccCCeEEEE--EEcCCCCeEEEEEeCCCCeEEEeecC-----CeEEEEECcCCceeee
Q 016457 95 HVLHSCSSDG------TIRAWDTRSFHEVWS--VTAGSQEIFCFSFGGSTDYLLAAGCG-----SQIQFWDWRNKKQVAC 161 (389)
Q Consensus 95 ~~l~s~~~dg------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~ 161 (389)
.+++.||.++ .+..||..+.+.... +.........+.+ ++..++.||.+ ..+..||..+++-...
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 4677776543 467788776654321 1111112222222 45555556653 3577888876543221
Q ss_pred eeecccCCeeEEEEecCCCCeEEEEeCC------CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec
Q 016457 162 LEESHVEDVTQVHFVPNNQNKVVSASVD------GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH 235 (389)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (389)
-...+...-.+++.. ++ .+++.|+.+ ..+..||..+.. ...+.... ....-.+++. .++.+++.|+.
T Consensus 374 ~~lp~~r~~~~~~~~-~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p-~~r~~~~~~~--~~~~iyv~GG~ 446 (534)
T PHA03098 374 PPLIFPRYNPCVVNV-NN-LIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLP-ISHYGGCAIY--HDGKIYVIGGI 446 (534)
T ss_pred CCcCcCCccceEEEE-CC-EEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCC-ccccCceEEE--ECCEEEEECCc
Confidence 110111111222222 34 377777632 357888987542 11111111 0111112222 24556666654
Q ss_pred CC--------cEEEEEcCCCc
Q 016457 236 IE--------TLSIWDWKDGQ 248 (389)
Q Consensus 236 d~--------~i~i~d~~~~~ 248 (389)
+. .+.+||..+.+
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred cCCCCCcccceEEEecCCCCc
Confidence 32 37788877654
No 430
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.28 E-value=0.002 Score=55.99 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=97.3
Q ss_pred EEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccc
Q 016457 128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLL 207 (389)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 207 (389)
....|-|.+..++.++.+..+..|| +.++.+.... .+.....++|..+++..++.+...+.+.+||+.+.. ...+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey--tqqL 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY--TQQL 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhh-hhcceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh--HHHH
Confidence 3456777888899999999999999 4455555554 455667788988887667777888999999998532 1111
Q ss_pred eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457 208 ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI 287 (389)
Q Consensus 208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 287 (389)
..-..+... -+.|+ +....++.+...+.+.|++..+.+.+..... |...++.+++.+.+ +.+
T Consensus 113 E~gg~~s~s--ll~ws-Kg~~el~ig~~~gn~viynhgtsR~iiv~Gk------------h~RRgtq~av~lEd---~vi 174 (615)
T KOG2247|consen 113 ESGGTSSKS--LLAWS-KGTPELVIGNNAGNIVIYNHGTSRRIIVMGK------------HQRRGTQIAVTLED---YVI 174 (615)
T ss_pred hccCcchHH--HHhhc-cCCccccccccccceEEEeccchhhhhhhcc------------cccceeEEEecccc---eee
Confidence 111111112 25677 6677788888889999999876655444332 56778888888876 445
Q ss_pred EecCCc
Q 016457 288 GGTGAG 293 (389)
Q Consensus 288 ~g~~dg 293 (389)
.++.|.
T Consensus 175 l~dcd~ 180 (615)
T KOG2247|consen 175 LCDCDN 180 (615)
T ss_pred ecCcHH
Confidence 555554
No 431
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.24 E-value=0.08 Score=29.51 Aligned_cols=31 Identities=13% Similarity=-0.053 Sum_probs=26.3
Q ss_pred cceEEEeecCCC---CeEEEEecCCeEEEEeCCC
Q 016457 39 DYVFEIVPKNDW---SLMAVSLSTNVVKLYSPVT 69 (389)
Q Consensus 39 ~~v~~~~~~~~~---~~l~~~~~d~~i~iw~~~~ 69 (389)
++|.++.|+|.. .+|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999854 5888888899999999885
No 432
>PRK13684 Ycf48-like protein; Provisional
Probab=95.09 E-value=2.1 Score=37.29 Aligned_cols=152 Identities=11% Similarity=0.077 Sum_probs=86.0
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEE-EeCCCceeeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKL-YSPVTGQYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH 115 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~i-w~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 115 (389)
...++++.+.|++.+++++. .|.+.. ++ ..++.-... ..-...++++.+.+++ ..++. +..|.+++=..+.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g--~~~~v-g~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDG--NLWML-ARGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCC--CEEEE-ecCCEEEEccCCCCC
Confidence 55788999999987776665 565543 22 222222222 2345678999999887 45554 456766532233333
Q ss_pred EEEEEEcC----CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--ecccCCeeEEEEecCCCCeEEEEeCC
Q 016457 116 EVWSVTAG----SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVHFVPNNQNKVVSASVD 189 (389)
Q Consensus 116 ~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d 189 (389)
.-.....+ ...+..+.+.|++ .+++++.+|.|.. ....++.-.... ..-....+.+.|..++. . +..+..
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~-~-~~~G~~ 322 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPG-EIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK-G-FVLGQR 322 (334)
T ss_pred ccccccCCccccccceeeEEEcCCC-CEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCc-e-EEECCC
Confidence 22211211 2457888998654 5677777776653 334444333322 01223577788876653 4 445668
Q ss_pred CcEEEEecC
Q 016457 190 GLICTFDTG 198 (389)
Q Consensus 190 ~~i~i~d~~ 198 (389)
|.|..|+-.
T Consensus 323 G~il~~~~~ 331 (334)
T PRK13684 323 GVLLRYVGS 331 (334)
T ss_pred ceEEEecCC
Confidence 888777643
No 433
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.99 E-value=1.4 Score=34.84 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=67.9
Q ss_pred CeEEEEecCCeEEEEeCC--CceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC------eEEEE-EccC----CeEE
Q 016457 51 SLMAVSLSTNVVKLYSPV--TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG------TIRAW-DTRS----FHEV 117 (389)
Q Consensus 51 ~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg------~i~iw-d~~~----~~~~ 117 (389)
+.|..+...+.|.+|++. ..+.+..+.. -+.|..+.++..| ++|+|--.+. .+|+| |.+. .+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G--DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG--DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc--ceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 455554667889999988 3356666664 4789999999998 7999964332 46665 2221 1111
Q ss_pred E-EEEc--------------------C-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC
Q 016457 118 W-SVTA--------------------G-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK 156 (389)
Q Consensus 118 ~-~~~~--------------------~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 156 (389)
. .+-+ . ..++.+++..|..+.|++++. +.+.+|.+...
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence 1 1112 1 356788998888888888776 78889987644
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=2.5 Score=37.43 Aligned_cols=158 Identities=7% Similarity=0.003 Sum_probs=85.6
Q ss_pred CeEEEEEeCCCCeEEEeecCCeEEEEECcCC--ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC
Q 016457 126 EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK--KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND 203 (389)
Q Consensus 126 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 203 (389)
.-+.+-|...++.+++.. .|.+.-|-..-. ...-.+.....++|.++.|++|.+ .+++--.+..|.+++.......
T Consensus 24 esngvFfDDaNkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 24 ESNGVFFDDANKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred cccceeeccCcceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh
Confidence 344566663344444443 355555554422 223333334567999999999996 8999999999999998643222
Q ss_pred CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCC
Q 016457 204 DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGE 282 (389)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 282 (389)
.............|....|. .+ .-++..+..| +-+|-.... +.++.... |...|.=..|.++.+
T Consensus 102 l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~pekrslRlVks------------~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVLPEKRSLRLVKS------------HNLNVNWYMYCPETA 166 (657)
T ss_pred hHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEchhhhhhhhhhh------------cccCccEEEEccccc
Confidence 22222333334558888887 44 3455554444 445543322 22222222 335566666777665
Q ss_pred eEEEEEecCCceEEEEEe
Q 016457 283 NLWVIGGTGAGTVGYFPV 300 (389)
Q Consensus 283 ~~~l~~g~~dg~i~i~~~ 300 (389)
-.+|+++-....+.=+.+
T Consensus 167 v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 167 VILLSTTVLENVLNPFHF 184 (657)
T ss_pred eEeeeccccccccccEEE
Confidence 433444433433333333
No 435
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.63 E-value=2.8 Score=36.49 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=56.2
Q ss_pred cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE---EEEEE----cCCCCeEEEEEeCC---CCeEEEeecC------
Q 016457 82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE---VWSVT----AGSQEIFCFSFGGS---TDYLLAAGCG------ 145 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~----~~~~~v~~~~~~~~---~~~l~~~~~d------ 145 (389)
.-++|+|.|++ .+++ +...|.|++++ ..+.. +..+. ........++++|+ +..+++....
T Consensus 3 ~P~~~a~~pdG--~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 3 NPRSMAFLPDG--RLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SEEEEEEETTS--CEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CceEEEEeCCC--cEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 35789999998 4555 56799999999 44443 22221 12567899999983 4555555441
Q ss_pred ---CeEEEEECcCC-------ceee-eeee--cccCCeeEEEEecCCCCeEEEEeCC
Q 016457 146 ---SQIQFWDWRNK-------KQVA-CLEE--SHVEDVTQVHFVPNNQNKVVSASVD 189 (389)
Q Consensus 146 ---~~i~iwd~~~~-------~~~~-~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d 189 (389)
..|.-|....+ +.+. .+.. .....-..|+|.|++. ++++.+..
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~ 134 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDG 134 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-T
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCC
Confidence 23443443322 1111 1121 1223456799999995 66666543
No 436
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.61 E-value=3 Score=36.92 Aligned_cols=198 Identities=13% Similarity=0.058 Sum_probs=111.4
Q ss_pred CCCeEEEEecCCeEEEEeCCCceeeeeecCC--CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCC-C
Q 016457 49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGH--SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGS-Q 125 (389)
Q Consensus 49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~ 125 (389)
++ .+.++..+|.|.-.|.++++.+.....- ...+..-.+..++ .++.++.++.+..+|..+++.+....... .
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G---~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG---KIYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC---eEEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 44 5566677888999999988866543322 1233333333366 68888999999999998999999888765 1
Q ss_pred CeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc--cCCeeEEEEecCCCCeEEEEeC--CCcEEEEecCCCC
Q 016457 126 EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH--VEDVTQVHFVPNNQNKVVSASV--DGLICTFDTGGDI 201 (389)
Q Consensus 126 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~ 201 (389)
.+..-..- .+..++..+.++.+...|..+++.+....... ...+..-....++ .++.+.. ++.+.-+|..++.
T Consensus 144 ~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 144 YYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG--TVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred EEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc--eEEEecCCCcceEEEEEccCCc
Confidence 12222222 34455555578999999998888877654111 1111111112222 4555555 5566667776553
Q ss_pred CCCcc-ceeeeccC-----CceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457 202 NDDDL-LESVINVG-----TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN 255 (389)
Q Consensus 202 ~~~~~-~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 255 (389)
..... ........ ..+..-... -+ .-++.++.++.+...|..+++.+-.+..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~-v~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVY-VD-GGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEE-EC-CcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 21110 00011110 011110111 11 1346677778888888888888877664
No 437
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=3.6 Score=41.49 Aligned_cols=151 Identities=13% Similarity=0.189 Sum_probs=92.3
Q ss_pred EeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC------CEEEEEecCCeEEEEEccCCe--
Q 016457 44 IVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP------HVLHSCSSDGTIRAWDTRSFH-- 115 (389)
Q Consensus 44 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~------~~l~s~~~dg~i~iwd~~~~~-- 115 (389)
|-+-|.-.+... +.|+.+.+|+.+++.....+.+-...|..+..-....+ ++++....--.|.++-+.-.+
T Consensus 84 mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~ 162 (1311)
T KOG1900|consen 84 MGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFT 162 (1311)
T ss_pred eccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecccc
Confidence 334444334443 34889999999998888888877777777764321110 233333333346665443111
Q ss_pred --E-----EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc----CC---c-e----------------eeeeee
Q 016457 116 --E-----VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR----NK---K-Q----------------VACLEE 164 (389)
Q Consensus 116 --~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~---~-~----------------~~~~~~ 164 (389)
. ..++......|+|+... ++++++.+|.||. +|.+. .+ + + +..+..
T Consensus 163 ~~~~~f~~~~~i~~dg~~V~~I~~t-~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 163 GELSIFNTSFKISVDGVSVNCITYT-ENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred CcccccccceeeecCCceEEEEEec-cCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 0 12233335678899955 7778888888884 44331 11 1 0 111112
Q ss_pred cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457 165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG 199 (389)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (389)
.+.++|..|+..... +++.+-+..|.|.+||+..
T Consensus 240 ~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence 467799999999887 4999999999999999985
No 438
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.38 E-value=0.12 Score=48.94 Aligned_cols=137 Identities=11% Similarity=0.088 Sum_probs=83.2
Q ss_pred CCeEEEEecCc--------eeeeee-c-CcceEEEeecC---CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEE
Q 016457 20 VNSIKRFGLKN--------SIQTNF-G-DDYVFEIVPKN---DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQI 86 (389)
Q Consensus 20 ~~~i~~w~~~~--------~~~~~~-~-~~~v~~~~~~~---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i 86 (389)
-|.+-+|++.. ...+.. . ...+.-+.|+| ..-++..+..++.|++.+.++... ..+.+|...+..+
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 36677888641 111121 1 44445555554 557888888899999988765432 4456677766655
Q ss_pred E-----------EeCCCCCCEEEEEecCCeEEEEEcc-----CCeEEEEEEcCC-CCeEEEEEeCCCC---------eEE
Q 016457 87 S-----------FSGPSTPHVLHSCSSDGTIRAWDTR-----SFHEVWSVTAGS-QEIFCFSFGGSTD---------YLL 140 (389)
Q Consensus 87 ~-----------~~~~~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~-~~v~~~~~~~~~~---------~l~ 140 (389)
+ .+||| ..++.++.||.+++|.+. ...+++..+.|. .+-.|.-|+.+.. .++
T Consensus 231 a~~~~g~~~l~~lSpDG--tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDG--TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHhhchhhheeeCCCC--cEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEE
Confidence 4 57788 789999999998888764 223455556663 4444443442221 233
Q ss_pred Eeec-CCeEEEEECcCCcee
Q 016457 141 AAGC-GSQIQFWDWRNKKQV 159 (389)
Q Consensus 141 ~~~~-d~~i~iwd~~~~~~~ 159 (389)
+++. +..+++|.....+++
T Consensus 309 tttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecccCCcceeEeeccchhhh
Confidence 3443 567888887666555
No 439
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.22 E-value=0.035 Score=52.41 Aligned_cols=154 Identities=13% Similarity=0.085 Sum_probs=86.6
Q ss_pred CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC--CCceeEEeecccccccCCccC
Q 016457 189 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK--DGQNVASFENARSLASDSWTL 266 (389)
Q Consensus 189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~ 266 (389)
.+.+++-+..+... ...-..+..+.+-.+.|-.-+...+. -.-|.+.+|++. .|+....+.-...-..++
T Consensus 110 ~~~vrvaN~~~sm~---~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs--- 181 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMR---HNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGS--- 181 (1283)
T ss_pred hhhhhhccCcchhH---HHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCC---
Confidence 44566665553211 11122344566666666422222222 233577788865 343332222111000000
Q ss_pred CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeecc-CCCc-ccCCCCCCCceeE
Q 016457 267 DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVL-PMPS-VQGRPAQSHGIFG 344 (389)
Q Consensus 267 ~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~-~~~~~~s~~~~~l 344 (389)
....|.-+-|.++.- ++..+-.++.|++..+.+... .+..+|...+.++. ...+ ......||||+.+
T Consensus 182 -~~~~V~wcp~~~~~~--~ic~~~~~~~i~lL~~~ra~~--------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~ 250 (1283)
T KOG1916|consen 182 -DPQLVSWCPIAVNKV--YICYGLKGGEIRLLNINRALR--------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVF 250 (1283)
T ss_pred -Ccceeeecccccccc--eeeeccCCCceeEeeechHHH--------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEE
Confidence 113344444555443 888888899999887776432 33357999888883 3322 2233589999999
Q ss_pred EEecCCCeEEEEeccCC
Q 016457 345 WTGGEDGRLCCWLSDDS 361 (389)
Q Consensus 345 ~s~~~dg~v~iW~~~~~ 361 (389)
+.+..||.+++|.+--.
T Consensus 251 a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 251 AWAISDGSVGFYQIYIT 267 (1283)
T ss_pred EEeecCCccceeeeeee
Confidence 99999999999998754
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.13 E-value=0.62 Score=37.58 Aligned_cols=70 Identities=19% Similarity=0.312 Sum_probs=50.4
Q ss_pred CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee------ee-------cccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457 125 QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL------EE-------SHVEDVTQVHFVPNNQNKVVSASVDGL 191 (389)
Q Consensus 125 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~~l~~~~~d~~ 191 (389)
.++..+.. .+.++++.+.+|.+++||+.+++.+..- -. .....|..+.++.+|. -+++-+ +|.
T Consensus 13 s~~~~l~~--~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~ 88 (219)
T PF07569_consen 13 SPVSFLEC--NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGD 88 (219)
T ss_pred CceEEEEe--CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCC
Confidence 45555554 6888999999999999999987754332 11 2446688888888874 555554 678
Q ss_pred EEEEecC
Q 016457 192 ICTFDTG 198 (389)
Q Consensus 192 i~i~d~~ 198 (389)
.+.|+..
T Consensus 89 ~y~y~~~ 95 (219)
T PF07569_consen 89 SYSYSPD 95 (219)
T ss_pred EEEeccc
Confidence 8999887
No 441
>PRK10115 protease 2; Provisional
Probab=94.05 E-value=6.2 Score=38.26 Aligned_cols=115 Identities=9% Similarity=-0.030 Sum_probs=65.3
Q ss_pred CCeEEEEEeCCCCeEEEeec-C----CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC-----CcEEE
Q 016457 125 QEIFCFSFGGSTDYLLAAGC-G----SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD-----GLICT 194 (389)
Q Consensus 125 ~~v~~~~~~~~~~~l~~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i 194 (389)
-.+..+.++|+++.++.+.. + ..|++.|+.++..+.... .... ..++|.+++..++++...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999888777654 2 368899998886443322 1212 4599999986444544322 35777
Q ss_pred EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC---CcEEEEEc
Q 016457 195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDW 244 (389)
Q Consensus 195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~ 244 (389)
+++.++......+.. .......-..+.+.++.+++..+.. +.+.+++.
T Consensus 204 h~lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 777765322333322 1222222122333466665554443 47888884
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=0.89 Score=40.02 Aligned_cols=115 Identities=12% Similarity=0.207 Sum_probs=80.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee----eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY----SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS 113 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 113 (389)
.++|.++.|++|++.||+--.+.+|.+++....+. ..+.+..+..|....|..+. -+|-....| +-+|....
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~---e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST---EIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe---eEEEEecCC-eEEEEEch
Confidence 67999999999999999999999999999843332 23334455679999998664 566665555 67776553
Q ss_pred -CeEEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCC
Q 016457 114 -FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNK 156 (389)
Q Consensus 114 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~ 156 (389)
.+.++..+.++..|.-..|.++...++.++. .+.+.=+.++++
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 3445566777788888888877666555544 344444444443
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.91 E-value=3.9 Score=36.21 Aligned_cols=112 Identities=11% Similarity=0.042 Sum_probs=54.5
Q ss_pred CCeeEEEEecCCCCeEEEEe-----------CCC-cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec
Q 016457 168 EDVTQVHFVPNNQNKVVSAS-----------VDG-LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH 235 (389)
Q Consensus 168 ~~v~~~~~~~~~~~~l~~~~-----------~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 235 (389)
.....|+|.++|. ++++-. ..+ .|.+++-..+.........+...-.....+++. +++ |+++..
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~-~~G--lyV~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA-VGG--VYVATP 89 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe-cCC--EEEeCC
Confidence 4567889999985 655542 223 677776543211111222232233355788887 566 444444
Q ss_pred CCcEEEE-EcCCC-----ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec
Q 016457 236 IETLSIW-DWKDG-----QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT 290 (389)
Q Consensus 236 d~~i~i~-d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~ 290 (389)
. .|..| |.... +....+...... . ..+......+.|.|||. +|+..|+
T Consensus 90 ~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~-~----~~~~~~~~~l~~gpDG~-LYv~~G~ 143 (367)
T TIGR02604 90 P-DILFLRDKDGDDKADGEREVLLSGFGGQ-I----NNHHHSLNSLAWGPDGW-LYFNHGN 143 (367)
T ss_pred C-eEEEEeCCCCCCCCCCccEEEEEccCCC-C----CcccccccCceECCCCC-EEEeccc
Confidence 4 34444 44211 111112211100 0 00224577899999985 4555553
No 444
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=5.4 Score=40.29 Aligned_cols=230 Identities=13% Similarity=0.097 Sum_probs=105.7
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCC-CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHS-STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 116 (389)
......++|+|...++|.|+..|.|++|-...-+......... ..+..+.+-... ........+..+.+|.......
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~--s~~~~l~~~~~~~~~~~~~~~~ 112 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGI--SRNLVLSDDDSLHLWSIKIKTG 112 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecc--cccceeecccceeeecccccce
Confidence 4566788999999999999999999999754323222211111 112222222211 1233333444555565432211
Q ss_pred EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-ecccCCeeEE-EEec-CCCCeEEEEeCCCcEE
Q 016457 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESHVEDVTQV-HFVP-NNQNKVVSASVDGLIC 193 (389)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~-~~~~-~~~~~l~~~~~d~~i~ 193 (389)
+ .....+++....+.-.. +.+ ..+.+++||..-... ..+. ..-....... ...+ .-.........+ -.
T Consensus 113 ~----~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~ 183 (993)
T KOG1983|consen 113 V----FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQL-SDLKYAGTESSNFVPYESLSPTLSIEGLVIDLD--TV 183 (993)
T ss_pred e----ecCCcceeccCCCCcch-hcc-cCceeeEeeechhhh-ccceeccccccccceeeeeccceeeeccccccc--cc
Confidence 1 12344555544333333 444 678888888652211 1111 0000000000 0000 000000000001 01
Q ss_pred EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457 194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV 273 (389)
Q Consensus 194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (389)
.+-+. .....+..+..++.+..+..++ -++.+...+.+.+|+.........+.. .
T Consensus 184 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 238 (993)
T KOG1983|consen 184 LISLP------DAYLGLSLIEYESLQVLYYSPT--KILIGFNRGLVVIKDRASKYVQSAYLP-----------------N 238 (993)
T ss_pred eeecc------cccccccccccccceeeeecCC--Ccceeeeeeeeeehhcccccchhhccc-----------------c
Confidence 11111 0112233344555555554232 234444455666666443333333322 1
Q ss_pred eecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
.....+++. .++++-.||.+.+||+..++.
T Consensus 239 ~~~~~~~~~--~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 239 GQLESRDGS--HFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccCccCCc--eEEEEEecCCEEeeecCCCce
Confidence 111267777 889999999999999998755
No 445
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.78 E-value=1.9 Score=31.28 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=68.7
Q ss_pred EEeCCCCCCEEEEEecCCeEEEEEccCC--------eEEEEEEcCCCCeEEEEEeC----CCCeEEEeecCCeEEEEECc
Q 016457 87 SFSGPSTPHVLHSCSSDGTIRAWDTRSF--------HEVWSVTAGSQEIFCFSFGG----STDYLLAAGCGSQIQFWDWR 154 (389)
Q Consensus 87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~ 154 (389)
.|.... ..|+.++.-|.|.|++.... ..+..++. ...|++++-.+ ++.-++..|....|..||+.
T Consensus 5 kfDG~~--pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVH--PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred EeCCCc--eeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 454443 57888888899999987632 34455554 57788887544 23446666667899999999
Q ss_pred CCceeeeeeecccCCeeEEEEecCC---CCeEEEEeCCCcEEEEecCC
Q 016457 155 NKKQVACLEESHVEDVTQVHFVPNN---QNKVVSASVDGLICTFDTGG 199 (389)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~ 199 (389)
....+..-. -...++++.+-.-+ ..++++|+ +..|.-||...
T Consensus 82 ~N~d~Fyke--~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDLFYKE--VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG 126 (136)
T ss_pred cCchhhhhh--CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence 877665443 34667777763221 12444444 66777777763
No 446
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.69 E-value=4.7 Score=35.67 Aligned_cols=142 Identities=8% Similarity=0.042 Sum_probs=75.5
Q ss_pred cceEEEeecCCCCeEEEEe-----------cCC-eEEEEeCCC--cee--eeeecCCCCcEEEEEEeCCCCCCEEEEEec
Q 016457 39 DYVFEIVPKNDWSLMAVSL-----------STN-VVKLYSPVT--GQY--SGECKGHSSTVNQISFSGPSTPHVLHSCSS 102 (389)
Q Consensus 39 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~iw~~~~--~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~ 102 (389)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+...-.....+++.+++ ++++ +.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G---lyV~-~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG---VYVA-TP 89 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC---EEEe-CC
Confidence 3456889999998766542 123 777776433 332 23333333456788998766 4444 44
Q ss_pred CCeEEEEEccCC-----eE--E-EEEEcC----CCCeEEEEEeCCCCeEEEeecC-------------------CeEEEE
Q 016457 103 DGTIRAWDTRSF-----HE--V-WSVTAG----SQEIFCFSFGGSTDYLLAAGCG-------------------SQIQFW 151 (389)
Q Consensus 103 dg~i~iwd~~~~-----~~--~-~~~~~~----~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~iw 151 (389)
....++.|.... +. + ..+... ......++|.|++...++.+.. |.|.-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 433334344311 21 1 112221 2447789999888766655521 334445
Q ss_pred ECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457 152 DWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS 187 (389)
Q Consensus 152 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 187 (389)
|...++ ...+..+ -.....++|+|++. ++++-.
T Consensus 170 ~pdg~~-~e~~a~G-~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 170 NPDGGK-LRVVAHG-FQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred ecCCCe-EEEEecC-cCCCccceECCCCC-EEEEcc
Confidence 544332 2233312 23356788988884 665533
No 447
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.68 E-value=4.9 Score=35.83 Aligned_cols=145 Identities=13% Similarity=0.114 Sum_probs=82.6
Q ss_pred eEEEeecCCCCeEEEEecCCeEEEEeCCCceee-e-eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe---
Q 016457 41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS-G-ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH--- 115 (389)
Q Consensus 41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~-~-~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--- 115 (389)
...+..++++.+++++.....++-|| .|+.. . .-......+.++.|.+++ ..++ ++.+|.+ ++....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg--~l~l-~g~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADG--GLWL-LTRGGGL-YVSKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCC--CEEE-EeCCceE-EEecCCCCccc
Confidence 34456678887777776433333344 23321 1 112234568999999888 4554 4466764 34444443
Q ss_pred --EEEEEEcC--CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--ecccCCeeEEEEecCCCCeEEEEeCC
Q 016457 116 --EVWSVTAG--SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVHFVPNNQNKVVSASVD 189 (389)
Q Consensus 116 --~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d 189 (389)
........ ...+.++.|. +++.++++|..|.+.... ..++.-.... ..-....+.+.|.+++ .....+.+
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~-~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~--~g~~~G~~ 390 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYR-SKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDK--KGFVLGND 390 (398)
T ss_pred ccceeecccCCCCcceEEEEEc-CCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCC--ceEEEeCC
Confidence 22222221 2458899998 566778888888777664 3343322221 1234568899998775 34555568
Q ss_pred CcEEEE
Q 016457 190 GLICTF 195 (389)
Q Consensus 190 ~~i~i~ 195 (389)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 877654
No 448
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.67 E-value=3.6 Score=34.20 Aligned_cols=151 Identities=10% Similarity=0.007 Sum_probs=82.6
Q ss_pred cEEEEEEeCCCCCCEEEEEe-cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEE-CcCCcee
Q 016457 82 TVNQISFSGPSTPHVLHSCS-SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWD-WRNKKQV 159 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~ 159 (389)
.+.+.++++++ ..++... .++.-.+|-...+.....+.. ...+..-.|++++....+...+....++. ..++...
T Consensus 25 ~~~s~AvS~dg--~~~A~v~~~~~~~~L~~~~~~~~~~~~~~-g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDG--SRVAAVSEGDGGRSLYVGPAGGPVRPVLT-GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCC--CeEEEEEEcCCCCEEEEEcCCCcceeecc-CCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 68899999999 4555544 233333443333333333322 24788889998855444444455556653 3333222
Q ss_pred -eeeeeccc-CCeeEEEEecCCCCeEEEEe---CCCcEEEEecCCCCCC-----CccceeeeccCCceeeEEEecCCCcE
Q 016457 160 -ACLEESHV-EDVTQVHFVPNNQNKVVSAS---VDGLICTFDTGGDIND-----DDLLESVINVGTSVGKVGFFGETNKH 229 (389)
Q Consensus 160 -~~~~~~~~-~~v~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~ 229 (389)
..+..... ..|+.+.++|+|. .++... .++.|.+--+.....- .............+..+.|. ++..+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~-RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~-~~~~L 179 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGT-RVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS-DDSTL 179 (253)
T ss_pred eEEecccccCCceEEEEECCCCc-EEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec-CCCEE
Confidence 12221111 2899999999996 665554 3577777655422111 11112222335688999999 55555
Q ss_pred EEEEecCC
Q 016457 230 LWCLTHIE 237 (389)
Q Consensus 230 l~~~~~d~ 237 (389)
++.+...+
T Consensus 180 ~V~~~~~~ 187 (253)
T PF10647_consen 180 VVLGRSAG 187 (253)
T ss_pred EEEeCCCC
Confidence 55554433
No 449
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.65 E-value=4.4 Score=35.23 Aligned_cols=241 Identities=10% Similarity=-0.005 Sum_probs=115.4
Q ss_pred ceEEEeecCCCCeEEEEecCCeEEEEeCCCcee---eeee----cCCCCcEEEEEEeCCC--CCCEEEEEecC-------
Q 016457 40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY---SGEC----KGHSSTVNQISFSGPS--TPHVLHSCSSD------- 103 (389)
Q Consensus 40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~---~~~~----~~~~~~v~~i~~~~~~--~~~~l~s~~~d------- 103 (389)
..++|+|.|||++++ +...|.|++++ ..+.. +..+ .........++++|+- ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999986655 56699999999 44443 2222 2345678999999951 10233333321
Q ss_pred -CeEEEEEccCC-------eEE-EEEEc---CCCCeEEEEEeCCCCeEEEeecC-------------CeEEEEECcCCce
Q 016457 104 -GTIRAWDTRSF-------HEV-WSVTA---GSQEIFCFSFGGSTDYLLAAGCG-------------SQIQFWDWRNKKQ 158 (389)
Q Consensus 104 -g~i~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~ 158 (389)
..|.-|....+ +.+ ..+.. ....-..|.|.|++...++.|.. |.|.-.+.. ++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 23444444333 111 22222 24566779999988666666552 233333322 110
Q ss_pred -------------eeeeeecccCCeeEEEEecC-CCCeEEEE-eCCCcEEEEecCCCCCC--------------------
Q 016457 159 -------------VACLEESHVEDVTQVHFVPN-NQNKVVSA-SVDGLICTFDTGGDIND-------------------- 203 (389)
Q Consensus 159 -------------~~~~~~~~~~~v~~~~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~~~-------------------- 203 (389)
...+..++. ....++|+|. +. ++++= +.++.=.|.-+..+...
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 111111222 2457999998 53 33331 22322222222221100
Q ss_pred -----CccceeeeccCCceeeEEEecC------CCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457 204 -----DDLLESVINVGTSVGKVGFFGE------TNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF 272 (389)
Q Consensus 204 -----~~~~~~~~~~~~~i~~~~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (389)
..+.. ...+...+..+.|... .+.++++.-..+.|....+.....+......- .+....+
T Consensus 238 ~~~~~~~P~~-~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~r~ 308 (331)
T PF07995_consen 238 SCPGFVPPVF-AYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL--------GGFGGRP 308 (331)
T ss_dssp S-TTS---SE-EETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC--------TTSSS-E
T ss_pred CCCCcCccce-eecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc--------ccCCCCc
Confidence 01111 2233456667777622 34456655556688887776553332221100 0123478
Q ss_pred eeecccCCCCeEEEEEecCCceEE
Q 016457 273 VDCHYPGEGENLWVIGGTGAGTVG 296 (389)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~dg~i~ 296 (389)
.++++.|||. +.++-+.+|.|+
T Consensus 309 ~~v~~~pDG~--Lyv~~d~~G~iy 330 (331)
T PF07995_consen 309 RDVAQGPDGA--LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEETTSE--EEEEE-TTTTEE
T ss_pred eEEEEcCCCe--EEEEECCCCeEe
Confidence 8999999986 555555777764
No 450
>PHA02790 Kelch-like protein; Provisional
Probab=93.28 E-value=6.7 Score=36.20 Aligned_cols=100 Identities=12% Similarity=-0.072 Sum_probs=48.7
Q ss_pred CEEEEEecCC-----eEEEEEccCCeEEE--EEEcCCCCeEEEEEeCCCCeEEEeecC--CeEEEEECcCCcee--eeee
Q 016457 95 HVLHSCSSDG-----TIRAWDTRSFHEVW--SVTAGSQEIFCFSFGGSTDYLLAAGCG--SQIQFWDWRNKKQV--ACLE 163 (389)
Q Consensus 95 ~~l~s~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~--~~~~ 163 (389)
.+++.||.++ .+..||..+++... .+....... +++.. ++...++||.+ ..+..||..+++-. ..+.
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVPA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEEE-CCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 4667777543 46678877655332 121111122 22222 44445555543 46788887655322 2221
Q ss_pred ecccCCeeEEEEecCCCCeEEEEeCCC---cEEEEecCCC
Q 016457 164 ESHVEDVTQVHFVPNNQNKVVSASVDG---LICTFDTGGD 200 (389)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~ 200 (389)
....-.+++. -++ .+.+.|+.++ .+..||.++.
T Consensus 351 --~~r~~~~~~~-~~g-~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 351 --KPRCNPAVAS-INN-VIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred --CCCcccEEEE-ECC-EEEEecCcCCCCccEEEEeCCCC
Confidence 1111112222 234 3777777553 4677887743
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.22 E-value=3.5 Score=32.72 Aligned_cols=106 Identities=12% Similarity=0.192 Sum_probs=63.9
Q ss_pred CeEEEeecCCeEEEEECcC--CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC------cEEEE-ecCCCCCCCccc
Q 016457 137 DYLLAAGCGSQIQFWDWRN--KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG------LICTF-DTGGDINDDDLL 207 (389)
Q Consensus 137 ~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~------~i~i~-d~~~~~~~~~~~ 207 (389)
+.|+++...+.|.+|++.. .+.+.++. .-+.|..+.++..|. ++++--.+. .+++| +.+.......++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 5565556668999999983 34556665 558899999999995 888865432 44553 333221111111
Q ss_pred e-ee---------------------eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457 208 E-SV---------------------INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG 247 (389)
Q Consensus 208 ~-~~---------------------~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 247 (389)
. .+ .....++.+++..|-.|++++. + ++.+.+|.+...
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEEE
Confidence 1 11 1123466778887667765543 3 457888887543
No 452
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.10 E-value=2.4 Score=40.00 Aligned_cols=68 Identities=16% Similarity=0.328 Sum_probs=49.5
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 110 (389)
..-++++.-+|.+..++.+..||.|++|++......+... ...+-..+.|...| |+++..|..+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg----l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG----LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc----eEEEeccchhheee
Confidence 5667888899999999999999999999986554322222 23344567777555 67777788777786
No 453
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.10 E-value=5.7 Score=34.88 Aligned_cols=201 Identities=13% Similarity=0.130 Sum_probs=110.7
Q ss_pred cCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe----CCCCCCEEEEEe-cC---CeEEEEEcc--CCeE
Q 016457 47 KNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS----GPSTPHVLHSCS-SD---GTIRAWDTR--SFHE 116 (389)
Q Consensus 47 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~~l~s~~-~d---g~i~iwd~~--~~~~ 116 (389)
+|...+++....++-+.+||++ |+.++.+. .+.++.+... -.+...-|+.++ .+ .+|++|.+. ++.
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~- 140 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE- 140 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-
T ss_pred CcccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-
Confidence 3455677777778899999987 77777664 2344444332 123111144444 32 479999876 333
Q ss_pred EEEEEc-------CCCCeEEEEE--eCC-CC-eEEEeecCCeEEEEECc---CC----ceeeeeeecccCCeeEEEEecC
Q 016457 117 VWSVTA-------GSQEIFCFSF--GGS-TD-YLLAAGCGSQIQFWDWR---NK----KQVACLEESHVEDVTQVHFVPN 178 (389)
Q Consensus 117 ~~~~~~-------~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~ 178 (389)
+..+.. ....+..+++ +|. +. +.++...+|.+..|-+. .+ +.+++|. -...+..++....
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDDE 218 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETT
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEecc
Confidence 333322 1234667776 333 33 45556668988888775 22 3566776 4557888999888
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCCC-ccceeeec--cCCceeeEEEec-CCC-cEEE-EEecCCcEEEEEcCCC-ceeE
Q 016457 179 NQNKVVSASVDGLICTFDTGGDINDD-DLLESVIN--VGTSVGKVGFFG-ETN-KHLW-CLTHIETLSIWDWKDG-QNVA 251 (389)
Q Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~-~~~-~~l~-~~~~d~~i~i~d~~~~-~~~~ 251 (389)
.. .|..+-++.-|.-|+.+...... ..+....+ ....|..+++.. .++ .+|+ +.-.+++..+|+.... ..+.
T Consensus 219 ~g-~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g 297 (381)
T PF02333_consen 219 TG-RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVG 297 (381)
T ss_dssp TT-EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEE
T ss_pred cC-CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccc
Confidence 75 99999999888888887432211 11211111 235677777752 222 3444 4445679999998753 4444
Q ss_pred Eee
Q 016457 252 SFE 254 (389)
Q Consensus 252 ~~~ 254 (389)
.|.
T Consensus 298 ~f~ 300 (381)
T PF02333_consen 298 SFR 300 (381)
T ss_dssp EEE
T ss_pred eEE
Confidence 443
No 454
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.03 E-value=0.91 Score=36.65 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=47.4
Q ss_pred ecCCCCeEEEEecCCeEEEEeCCCceeeeee-------c-------CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457 46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-------K-------GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111 (389)
Q Consensus 46 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-------~-------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~ 111 (389)
+..++.+|++-+.+|.+++||+.+++.+..- . .....|..+..+.+| .-+++- .+|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G--~PiV~l-sng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG--VPIVTL-SNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC--CEEEEE-eCCCEEEecc
Confidence 4456778988999999999999988654321 2 345678888888777 344444 3567788886
Q ss_pred cCCeEE
Q 016457 112 RSFHEV 117 (389)
Q Consensus 112 ~~~~~~ 117 (389)
.-+.-+
T Consensus 95 ~L~~W~ 100 (219)
T PF07569_consen 95 DLGCWI 100 (219)
T ss_pred ccceeE
Confidence 644333
No 455
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.95 E-value=4.6 Score=33.95 Aligned_cols=114 Identities=14% Similarity=0.218 Sum_probs=67.9
Q ss_pred CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe------cCCeEEEEEccCCeEEEEEEc-----CCCCeE
Q 016457 60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS------SDGTIRAWDTRSFHEVWSVTA-----GSQEIF 128 (389)
Q Consensus 60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~-----~~~~v~ 128 (389)
..|++||..+.+-...-.+-.+.|+++.|..+. ++++.|. ....+..||+.+.... .+.. -.++|.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~--~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN--QLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCC--EEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEE
Confidence 469999988766554445567889999998555 5777664 3456888998765432 2332 146788
Q ss_pred EEEEeC-CCCeEEEeec----CCeEEEEECcCCceeee-eeecccCCeeEEEEec
Q 016457 129 CFSFGG-STDYLLAAGC----GSQIQFWDWRNKKQVAC-LEESHVEDVTQVHFVP 177 (389)
Q Consensus 129 ~~~~~~-~~~~l~~~~~----d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~ 177 (389)
.+.+.. +...+.++|. +..|..||=.+...+.. .. .....|..+.+-|
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~-~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDIL-GSGTTIRGLQVLP 146 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCceEecccccc-CCCCEEEEEEEEe
Confidence 887742 3444554443 34566776554444433 11 2234455555443
No 456
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=3.9 Score=32.22 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=63.3
Q ss_pred CCCeEEEEec--CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCC
Q 016457 49 DWSLMAVSLS--TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQE 126 (389)
Q Consensus 49 ~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 126 (389)
+|.++.+.+. ...|++||+.+|+.+.+-.-....+..=-...-++ .+.+-.-.+|.-..+|.++.+.+..+.. .+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y-~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSY-EGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhccccc-CCc
Confidence 3455555554 34799999999987765432111221111111121 1333344677788899998888877765 355
Q ss_pred eEEEEEeCCCCeEEEeecCCeEEEEECcCCcee
Q 016457 127 IFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV 159 (389)
Q Consensus 127 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 159 (389)
=+.++. ++..++.+.....+..-|.++....
T Consensus 133 GWgLt~--d~~~LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 133 GWGLTS--DDKNLIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred ceeeec--CCcceEeeCCceEEEecCHHHhhhc
Confidence 666665 5666776666677777777655433
No 457
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.76 E-value=7.3 Score=35.21 Aligned_cols=140 Identities=12% Similarity=0.104 Sum_probs=90.3
Q ss_pred EEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC-------CeEEEeecCCeEEEEECcCCc-eeeeee--e-
Q 016457 96 VLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST-------DYLLAAGCGSQIQFWDWRNKK-QVACLE--E- 164 (389)
Q Consensus 96 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~d~~i~iwd~~~~~-~~~~~~--~- 164 (389)
++..|+....+.-.|+..|+.+..+..|... -+.|.|.. ..-++|-++..|.-.|.|... .+.... .
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence 4445666677888899999999999987444 56777643 335566667777777877432 222211 0
Q ss_pred cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457 165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW 244 (389)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 244 (389)
.......|..-...| ++++++..|-|++||--.. .....+.+.+..|..+... .+|+++++.+. ..+.+-|+
T Consensus 560 ~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~----rAKtalP~lG~aIk~idvt-a~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 560 KTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGK----RAKTALPGLGDAIKHIDVT-ANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred cccccccccccccCc--eEEEecCCCceeeehhhcc----hhhhcCcccccceeeeEee-cCCcEEEEeec-ceEEEEec
Confidence 112234444444554 8999999999999997632 1223344567788888888 77777666554 46667675
Q ss_pred C
Q 016457 245 K 245 (389)
Q Consensus 245 ~ 245 (389)
.
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 4
No 458
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=92.34 E-value=12 Score=36.76 Aligned_cols=199 Identities=10% Similarity=0.091 Sum_probs=111.1
Q ss_pred CEEEEEecCCeEEEEEccCCeEEEEE--------EcCCCCeEEEEEe--CCCCeEEEeecC---CeEEEEECcC--C---
Q 016457 95 HVLHSCSSDGTIRAWDTRSFHEVWSV--------TAGSQEIFCFSFG--GSTDYLLAAGCG---SQIQFWDWRN--K--- 156 (389)
Q Consensus 95 ~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~--~~~~~l~~~~~d---~~i~iwd~~~--~--- 156 (389)
.-++.....|.+++|-.+........ ......|+..++. .++..+++++.+ +.|++|.+.- +
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 35666678899999977432222111 1224556655554 455566666654 7888875431 1
Q ss_pred -----c--eeeeeee---c-----------------ccCCeeEEEEec------CCCCeEEEEeC----CCcEEEEecCC
Q 016457 157 -----K--QVACLEE---S-----------------HVEDVTQVHFVP------NNQNKVVSASV----DGLICTFDTGG 199 (389)
Q Consensus 157 -----~--~~~~~~~---~-----------------~~~~v~~~~~~~------~~~~~l~~~~~----d~~i~i~d~~~ 199 (389)
+ +-..+.. . .-..++.+.|-+ ..+..+++.+. ...|.-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 0 1111110 0 112566777765 12224544443 34689999874
Q ss_pred CCCCC-----------------ccceee-----eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEe----
Q 016457 200 DINDD-----------------DLLESV-----INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF---- 253 (389)
Q Consensus 200 ~~~~~-----------------~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---- 253 (389)
....- .....+ ......|.++... .-+.+++..-.||+|.++|-.+.+.+...
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~-~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~ 301 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSP-ELDIVVAFAFSDGSIEFRDRNTMKELNETRTNG 301 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEec-ccCcEEEEEEcCCeEEEEecCcchhhccccccc
Confidence 32100 000001 1123456677765 55668999999999999999888766555
Q ss_pred eccc---ccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEE
Q 016457 254 ENAR---SLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVG 296 (389)
Q Consensus 254 ~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~ 296 (389)
.... .+....+.++....+..++|||.+. .++.-..+|.+.
T Consensus 302 ~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c--~~v~~~~~~~~~ 345 (753)
T PF11635_consen 302 EPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC--SLVQIDEDGKTK 345 (753)
T ss_pred CCccccccccccccccccCCCCceEEECcccc--eEEEEecCCCce
Confidence 2111 1222334444445666789999987 567777788755
No 459
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=3.8 Score=41.30 Aligned_cols=174 Identities=13% Similarity=0.095 Sum_probs=102.1
Q ss_pred EEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEe--------CC
Q 016457 64 LYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFG--------GS 135 (389)
Q Consensus 64 iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------~~ 135 (389)
+|++. .+.+..+. |...-..+-+.|.-. ..-+ +.|+.+.+|+.+++.....+.+-...|..+..- |.
T Consensus 64 v~~IP-~el~eq~~-~~~~~~~mGiFpeI~-RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~ 138 (1311)
T KOG1900|consen 64 VVNIP-DELLEQFS-NIECKTDMGIFPEIG-RAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE 138 (1311)
T ss_pred cccCC-HHHHHHhc-Ccceeeeeccchhhc-ceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh
Confidence 34443 23344444 444555555555542 2333 357889999999988777777767777776642 22
Q ss_pred CCeEEEeecCCeEEEEECc----CCce-----eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC----
Q 016457 136 TDYLLAAGCGSQIQFWDWR----NKKQ-----VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN---- 202 (389)
Q Consensus 136 ~~~l~~~~~d~~i~iwd~~----~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---- 202 (389)
=.++++.+.--.|.++-+. ++.. ..++. ..+..|+|+....+|+ .|+ ++.||.|+-+-......
T Consensus 139 IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~-~dg~~V~~I~~t~nGR-IF~-~G~dg~lyEl~Yq~~~gWf~~ 215 (1311)
T KOG1900|consen 139 IQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS-VDGVSVNCITYTENGR-IFF-AGRDGNLYELVYQAEDGWFGS 215 (1311)
T ss_pred hheeEEecccceEEEEEEEeccccCcccccccceeee-cCCceEEEEEeccCCc-EEE-eecCCCEEEEEEeccCchhhc
Confidence 2455555555566665432 1111 12222 2356789999888885 555 55566444322221100
Q ss_pred --C------------Cccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457 203 --D------------DDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD 246 (389)
Q Consensus 203 --~------------~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 246 (389)
. ...+..+. .+..+|..+... .....+.+-+..++|.+||+..
T Consensus 216 rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID-~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 216 RCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID-NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec-cccceeeeeccCceEEEEEccC
Confidence 0 00012222 456789999997 6677899999999999999976
No 460
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=5.5 Score=36.08 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=21.9
Q ss_pred CeEEEEEeCCCCeEEEeecCCeEEEEEC
Q 016457 126 EIFCFSFGGSTDYLLAAGCGSQIQFWDW 153 (389)
Q Consensus 126 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 153 (389)
.|..+..++.|..++.+|.+|.+.++=.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp 132 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELP 132 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEch
Confidence 4667778888999999999888777643
No 461
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=7.5 Score=32.48 Aligned_cols=191 Identities=10% Similarity=0.048 Sum_probs=111.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeee---eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG---ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF 114 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 114 (389)
.+.+..+.++.+ +...+..+.-++|.|+.+...-. .+. ..+--.++.. .| ++...+..|.-+.+.|+.+.
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v--sG--n~aYVadlddgfLivdvsdp 158 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV--SG--NYAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEe--cC--CEEEEeeccCcEEEEECCCC
Confidence 666777888765 56666667779999987653222 222 1122333333 45 58888886666778888754
Q ss_pred ---eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce---eeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457 115 ---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ---VACLEESHVEDVTQVHFVPNNQNKVVSASV 188 (389)
Q Consensus 115 ---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 188 (389)
+....+.........++.+ +++-+++..|+-+.+.|+..... +.... ....+.++..+++.. +++ ..
T Consensus 159 ssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n--~g~g~~sv~vsdnr~-y~v-vy- 231 (370)
T COG5276 159 SSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN--TGPGTYSVSVSDNRA-YLV-VY- 231 (370)
T ss_pred CCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe--cCCceEEEEecCCee-EEE-Ec-
Confidence 3344444445555677775 78888888899999999986543 33332 233678888887642 333 33
Q ss_pred CCcEEEEecCCCCCCCccceeeeccCCc--eeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457 189 DGLICTFDTGGDINDDDLLESVINVGTS--VGKVGFFGETNKHLWCLTHIETLSIWDWKDG 247 (389)
Q Consensus 189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 247 (389)
+.-+.+-|..+.. . ..+........+ +..+.. .+++......+.-+.+-|+.+.
T Consensus 232 ~egvlivd~s~~s-s-p~~~gsyet~~p~~~s~v~V---s~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 232 DEGVLIVDVSGPS-S-PTVFGSYETSNPVSISTVPV---SGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred ccceEEEecCCCC-C-ceEeeccccCCcccccceec---ccceeeeeccccCceeEeccCC
Confidence 4447777777432 1 111111122222 222333 3456666666666666666543
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.42 E-value=1.3 Score=24.37 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=24.6
Q ss_pred CCCCeEEEeec-CCeEEEEECcCCceeeeee
Q 016457 134 GSTDYLLAAGC-GSQIQFWDWRNKKQVACLE 163 (389)
Q Consensus 134 ~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~ 163 (389)
|++++++++.. ++.|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 56777887775 7899999999888888776
No 463
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.35 E-value=1.6 Score=41.09 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=45.2
Q ss_pred CCCCeEEEEecCCeEEEEeCCC----ceeeee-----------ecC-----------CCCcEEEEEEeC----CCCCCEE
Q 016457 48 NDWSLMAVSLSTNVVKLYSPVT----GQYSGE-----------CKG-----------HSSTVNQISFSG----PSTPHVL 97 (389)
Q Consensus 48 ~~~~~l~~~~~d~~i~iw~~~~----~~~~~~-----------~~~-----------~~~~v~~i~~~~----~~~~~~l 97 (389)
++...++++..||.+....... +..... +.+ ....+..++..+ +. .+|
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l 233 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD--TFL 233 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT--TEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC--CEE
Confidence 3566788888899888877653 111110 110 123455556655 33 699
Q ss_pred EEEecCCeEEEEEccCCeEEEEEEc
Q 016457 98 HSCSSDGTIRAWDTRSFHEVWSVTA 122 (389)
Q Consensus 98 ~s~~~dg~i~iwd~~~~~~~~~~~~ 122 (389)
++.+.|+++|+||+.+++++.+...
T Consensus 234 ~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 234 FTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EEEETTSEEEEEETTTTCEEEEEET
T ss_pred EEEeCCCeEEEEECCCCeEEEEecc
Confidence 9999999999999999999777654
No 464
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.30 E-value=1.5 Score=33.96 Aligned_cols=31 Identities=6% Similarity=0.151 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCC-----C-eEEEeecCCeEEEEECcC
Q 016457 125 QEIFCFSFGGST-----D-YLLAAGCGSQIQFWDWRN 155 (389)
Q Consensus 125 ~~v~~~~~~~~~-----~-~l~~~~~d~~i~iwd~~~ 155 (389)
..+..++|+|.| + .|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999843 2 355556699999998653
No 465
>PRK13684 Ycf48-like protein; Provisional
Probab=91.09 E-value=9.8 Score=33.17 Aligned_cols=153 Identities=12% Similarity=0.066 Sum_probs=80.5
Q ss_pred CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-eEEEEEE-cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457 80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-HEVWSVT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK 157 (389)
Q Consensus 80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 157 (389)
...+.++.+.+++ .++ ..+..|.+.. ..+.+ +.-..+. .....++++.+.+++..+ +.+..|.+.+=....+.
T Consensus 172 ~g~~~~i~~~~~g--~~v-~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~-~vg~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDG--KYV-AVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLW-MLARGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCC--eEE-EEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEE-EEecCCEEEEccCCCCC
Confidence 4568899999887 444 4455665432 11222 2222222 235788999999766554 45566776543233333
Q ss_pred eeeeeeec---ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457 158 QVACLEES---HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT 234 (389)
Q Consensus 158 ~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 234 (389)
.-.....+ ....+..+.+.|++. . +.++.+|.+.. ....+. ....+............+.|. +++ ..+..+
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~-~-~~~G~~G~v~~-S~d~G~-tW~~~~~~~~~~~~~~~~~~~-~~~-~~~~~G 320 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGE-I-WAGGGNGTLLV-SKDGGK-TWEKDPVGEEVPSNFYKIVFL-DPE-KGFVLG 320 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCC-E-EEEcCCCeEEE-eCCCCC-CCeECCcCCCCCcceEEEEEe-CCC-ceEEEC
Confidence 22221101 124578899998764 4 44556776553 333221 111211111223457777776 344 455666
Q ss_pred cCCcEEEEE
Q 016457 235 HIETLSIWD 243 (389)
Q Consensus 235 ~d~~i~i~d 243 (389)
..|.|--|+
T Consensus 321 ~~G~il~~~ 329 (334)
T PRK13684 321 QRGVLLRYV 329 (334)
T ss_pred CCceEEEec
Confidence 778776665
No 466
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.86 E-value=9.6 Score=32.66 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=39.3
Q ss_pred CCCeEEEEecCCeEEEEeCCC--ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe-cCCeEEEEEcc
Q 016457 49 DWSLMAVSLSTNVVKLYSPVT--GQYSGECKGHSSTVNQISFSGPSTPHVLHSCS-SDGTIRAWDTR 112 (389)
Q Consensus 49 ~~~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~iwd~~ 112 (389)
++++|+.|+.+| +.+.+... ++..+.+ +...|+++...+.. +.|++-+ ....++.+++.
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~--~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEEN--NVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhh--CEEEEEeCCcceEEEEEHH
Confidence 336899999888 55555554 2333333 46789999999877 4555544 34459999985
No 467
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.39 E-value=17 Score=34.62 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=85.4
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce--eeeeecC-CCCcEEEEEEeCCCC----CCEEEEEec-C---CeE
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--YSGECKG-HSSTVNQISFSGPST----PHVLHSCSS-D---GTI 106 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~-~~~~v~~i~~~~~~~----~~~l~s~~~-d---g~i 106 (389)
++.|-.+.|.++++.+++...+|.|.+||...+. .+..+.. +...+.-=+|-++.. ..++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6788899999999999999999999999993332 1112211 222111112222211 145555554 3 246
Q ss_pred EEEEcc-CCeEEEEEE---cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec----cc-CCeeEEEEec
Q 016457 107 RAWDTR-SFHEVWSVT---AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES----HV-EDVTQVHFVP 177 (389)
Q Consensus 107 ~iwd~~-~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~-~~v~~~~~~~ 177 (389)
+++.+. ....+..+. .+........|.-+.+.++.- .++.|.+|++...+...++.-. .. ..+.++. |
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~--~ 285 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK--P 285 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee--c
Confidence 777771 222333332 122223333333344454444 6789999999888776665521 11 1233332 2
Q ss_pred CCCCeEEEEeCCCcEEEEecC
Q 016457 178 NNQNKVVSASVDGLICTFDTG 198 (389)
Q Consensus 178 ~~~~~l~~~~~d~~i~i~d~~ 198 (389)
-.+++++.+. ++.|++.|+.
T Consensus 286 ~s~nRvLLs~-~nkIyLld~~ 305 (670)
T PF10395_consen 286 PSPNRVLLSV-NNKIYLLDLK 305 (670)
T ss_pred CCCCeEEEEc-CCEEEEEeeh
Confidence 2223444443 6789999987
No 468
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.15 E-value=10 Score=31.94 Aligned_cols=207 Identities=14% Similarity=0.112 Sum_probs=113.3
Q ss_pred cEEEEEEeCCCCCCEEEEEecCCeEEEEEcc------CC-eEEEEEEc-----CCCCeEEEEEeCCCC------------
Q 016457 82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTR------SF-HEVWSVTA-----GSQEIFCFSFGGSTD------------ 137 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------ 137 (389)
.-+.|+++|.+ .+-++...-+...+||.. .. ..+-++.. .....+.+.|+....
T Consensus 24 N~WGia~~p~~--~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGG--PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCC--CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 45789999988 577777777889999986 12 22333332 134677888874332
Q ss_pred eEEEeecCCeEEEEECcCCce-----eeeeeecccCCe-eEEEEecC--CCCeEEEEeCCCcEEEEecCCCCCCCcccee
Q 016457 138 YLLAAGCGSQIQFWDWRNKKQ-----VACLEESHVEDV-TQVHFVPN--NQNKVVSASVDGLICTFDTGGDINDDDLLES 209 (389)
Q Consensus 138 ~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~v-~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 209 (389)
.++.++.||+|.-|...-... ...+.......| ..+++-.. +..+.++--..++|.+||-.-..... ...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--~g~ 179 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--PGS 179 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC--CCC
Confidence 256677899999998543222 122221112223 34555433 43345555568999999876221000 000
Q ss_pred eec----cCCceeeEEEe-----------cCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457 210 VIN----VGTSVGKVGFF-----------GETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD 274 (389)
Q Consensus 210 ~~~----~~~~i~~~~~~-----------~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (389)
+.. ..-....+.-. .++...=+.+..-|.|-+||+. ++.++.+..... -...+.
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~----------LNaPWG 248 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGR----------LNAPWG 248 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCc----------ccCCce
Confidence 000 00111111111 0111122333444789999975 778877754321 133445
Q ss_pred ecccCC------CCeEEEEEecCCceEEEEEeccCCc
Q 016457 275 CHYPGE------GENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 275 ~~~~~~------~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
++..|- +. +|+.--.||+|..||..+++.
T Consensus 249 ~a~APa~FG~~sg~--lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 249 LAIAPESFGSLSGA--LLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred eeeChhhhCCCCCC--eEEeecCCceeEEecCCCCce
Confidence 555442 34 566666799999999988775
No 469
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.95 E-value=13 Score=32.76 Aligned_cols=193 Identities=11% Similarity=0.114 Sum_probs=107.7
Q ss_pred CEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEe----CCCCe--EEEeec-C---CeEEEEECcCC-ceeeeee
Q 016457 95 HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFG----GSTDY--LLAAGC-G---SQIQFWDWRNK-KQVACLE 163 (389)
Q Consensus 95 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~~-d---~~i~iwd~~~~-~~~~~~~ 163 (389)
.+++....++-+.+||+. |+.+..+.. +.++.+..- -.+.. |++++. + ..|++|-+... ..+..+.
T Consensus 69 SlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp -EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred ceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 477777888889999986 677777653 345544432 12333 445544 2 47999977521 2233322
Q ss_pred e------cccCCeeEEEEe--c-CCCCeEEEEeCCCcEEEEecCCCC---CCCccceeeeccCCceeeEEEecCCCcEEE
Q 016457 164 E------SHVEDVTQVHFV--P-NNQNKVVSASVDGLICTFDTGGDI---NDDDLLESVINVGTSVGKVGFFGETNKHLW 231 (389)
Q Consensus 164 ~------~~~~~v~~~~~~--~-~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 231 (389)
. .....+..+++. | ++..+++....+|.+..|-+.... .....++++ ...+.+..+... +....|+
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f-~~~sQ~EGCVVD-De~g~LY 223 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF-KVGSQPEGCVVD-DETGRLY 223 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-E-SS-EEEEEEE-TTTTEEE
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-cCCCcceEEEEe-cccCCEE
Confidence 0 111335666663 3 344467777889999888885221 112334444 345688899998 6667899
Q ss_pred EEecCCcEEEEEcCCC-----ceeEEeecccccccCCccCCCCCceeeeccc--CCCCeEEEEEecCCceEEEEEecc
Q 016457 232 CLTHIETLSIWDWKDG-----QNVASFENARSLASDSWTLDDVDYFVDCHYP--GEGENLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 232 ~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~g~~dg~i~i~~~~~ 302 (389)
.+-++.-|.-|+.+.. ..+....+.. ....+-.+++. .+++..+|++.-.+++..||+...
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~----------l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDG----------LVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSS----------B-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccc----------cccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 9999988888887632 1222222211 22456666664 455564555655677899999875
No 470
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.71 E-value=8.3 Score=36.90 Aligned_cols=115 Identities=9% Similarity=0.010 Sum_probs=72.2
Q ss_pred CeEEEEEeC--CCCeEEEeecCCeEEEEECcC-------C-------------ceeeeeeecccCCeeEEEEe--cCCCC
Q 016457 126 EIFCFSFGG--STDYLLAAGCGSQIQFWDWRN-------K-------------KQVACLEESHVEDVTQVHFV--PNNQN 181 (389)
Q Consensus 126 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~-------~-------------~~~~~~~~~~~~~v~~~~~~--~~~~~ 181 (389)
.|+.|.... ....|+++..||.|.+|.+++ . ++...+. -...+..++++ ... +
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~-r 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKS-R 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcc-e
Confidence 455554332 345577778899999997632 0 0112222 34578899998 666 3
Q ss_pred eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC----C-cEEEEEecCCcEEEEEc
Q 016457 182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET----N-KHLWCLTHIETLSIWDW 244 (389)
Q Consensus 182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~-~~l~~~~~d~~i~i~d~ 244 (389)
+||+++....|.||-..... ..........+..-|-+|+|.+.+ | ..+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~-~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVD-ERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccc-cccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888888776321 111111122356678899997433 2 27788888999888887
No 471
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.55 E-value=13 Score=32.24 Aligned_cols=118 Identities=11% Similarity=0.116 Sum_probs=69.2
Q ss_pred CCeeEEEEecCCCCeEEEEeCCCc------EEEEecCCCCCCCc-----cceeeeccCC--------ceeeEEEecCCCc
Q 016457 168 EDVTQVHFVPNNQNKVVSASVDGL------ICTFDTGGDINDDD-----LLESVINVGT--------SVGKVGFFGETNK 228 (389)
Q Consensus 168 ~~v~~~~~~~~~~~~l~~~~~d~~------i~i~d~~~~~~~~~-----~~~~~~~~~~--------~i~~~~~~~~~~~ 228 (389)
+.++.|.+.+++. .+++.+.+|. +..+++........ ....+....+ -..++++. +++.
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~-~~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVP-PDGS 97 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEe-cCCC
Confidence 4578899987664 7888888888 77666663110000 0111111111 33477884 7787
Q ss_pred EEEEEecC------CcEEEEEcCCCceeEEeecccccccCC---ccCCCCCceeeecccCCCCeEEEEE
Q 016457 229 HLWCLTHI------ETLSIWDWKDGQNVASFENARSLASDS---WTLDDVDYFVDCHYPGEGENLWVIG 288 (389)
Q Consensus 229 ~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~l~~ 288 (389)
++++.-.+ ..|..++.. |+.+..+.......... -.......+-+++++|+|+.+|.+.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 77777777 788888876 77666653222111000 1122557788999999999555443
No 472
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.47 E-value=15 Score=32.64 Aligned_cols=148 Identities=14% Similarity=0.063 Sum_probs=85.0
Q ss_pred EEEEEecCCeEEEEEccCCeEEEEEEcCC--CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeeccc-CCeeE
Q 016457 96 VLHSCSSDGTIRAWDTRSFHEVWSVTAGS--QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHV-EDVTQ 172 (389)
Q Consensus 96 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~ 172 (389)
.+..+..+|.|.-.|..+++.+....... ..+.+-.+. .++.+++++.++.+..+|.++++.+.... ... ..+..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~-~~G~i~~g~~~g~~y~ld~~~G~~~W~~~-~~~~~~~~~ 147 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILG-SDGKIYVGSWDGKLYALDASTGTLVWSRN-VGGSPYYAS 147 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEE-eCCeEEEecccceEEEEECCCCcEEEEEe-cCCCeEEec
Confidence 67777889999999999888776544321 222222233 25668888889999999998999888876 333 11112
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcc-c---eeeeccCCceeeEEEecCCCcEEEEEec--CCcEEEEEcCC
Q 016457 173 VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDL-L---ESVINVGTSVGKVGFFGETNKHLWCLTH--IETLSIWDWKD 246 (389)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~ 246 (389)
-..-.++ .+..++.++.+...|..++...... . ........++ . .++ .++.+.. ++.+.-+|..+
T Consensus 148 ~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~----~--~~~-~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 148 PPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA----I--ASG-TVYVGSDGYDGILYALNAED 218 (370)
T ss_pred CcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce----e--ecc-eEEEecCCCcceEEEEEccC
Confidence 2222332 4555556788888877765321100 0 1111111111 1 222 3444444 56677778888
Q ss_pred CceeEEee
Q 016457 247 GQNVASFE 254 (389)
Q Consensus 247 ~~~~~~~~ 254 (389)
+...-...
T Consensus 219 G~~~w~~~ 226 (370)
T COG1520 219 GTLKWSQK 226 (370)
T ss_pred CcEeeeee
Confidence 87766543
No 473
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.34 E-value=3.1 Score=32.19 Aligned_cols=31 Identities=10% Similarity=0.273 Sum_probs=26.1
Q ss_pred CCeeEEEEecCC-----CCeEEEEeCCCcEEEEecC
Q 016457 168 EDVTQVHFVPNN-----QNKVVSASVDGLICTFDTG 198 (389)
Q Consensus 168 ~~v~~~~~~~~~-----~~~l~~~~~d~~i~i~d~~ 198 (389)
..+..++|+|.| +-+|++.+.++.|.+|...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999964 3489999999999999877
No 474
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.18 E-value=5.2 Score=37.93 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=70.1
Q ss_pred CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce
Q 016457 79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ 158 (389)
Q Consensus 79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 158 (389)
....++++.-+|.+ +.++++..||+|++|+....+....... ..+-..+.|. +.-++++.+|..+.-|. +.|-.
T Consensus 13 ~~e~~~aiqshp~~--~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~t--nhgl~~~tsdrr~la~~-~dgvv 86 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGG--QSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFT--NHGLVTATSDRRALAWK-EDGVV 86 (1636)
T ss_pred ccceeeeeeecCCC--ceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeee--ccceEEEeccchhheee-ccCcc
Confidence 34567788888888 7999999999999999865444222221 2334455564 44567777788888886 34544
Q ss_pred eeeee--ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457 159 VACLE--ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG 198 (389)
Q Consensus 159 ~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (389)
.+++. ........++...|..+ =++|+-.|-|.-+|.-
T Consensus 87 qqqfdyndqsekefss~~cdptaq--nvvgtlcggv~q~dcc 126 (1636)
T KOG3616|consen 87 QQQFDYNDQSEKEFSSILCDPTAQ--NVVGTLCGGVEQFDCC 126 (1636)
T ss_pred hhhccccchhhhhccceecCchhh--hhhhhhccceeeehHH
Confidence 33333 22334566777778764 3345555667766653
No 475
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.06 E-value=25 Score=34.79 Aligned_cols=164 Identities=12% Similarity=0.169 Sum_probs=94.2
Q ss_pred CCCeEEEEEe---C---CCCeEEEeecCCeEEEEECcCC---------------ceeeeee--ecccCCeeEEEEecCCC
Q 016457 124 SQEIFCFSFG---G---STDYLLAAGCGSQIQFWDWRNK---------------KQVACLE--ESHVEDVTQVHFVPNNQ 180 (389)
Q Consensus 124 ~~~v~~~~~~---~---~~~~l~~~~~d~~i~iwd~~~~---------------~~~~~~~--~~~~~~v~~~~~~~~~~ 180 (389)
..+|..|+|. . ....+++.=....+.|+...-. .++..+. .....+...++|+|...
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 5778878776 2 1223555555667777762111 2333333 11234678899999887
Q ss_pred CeEEEEeCCCcEEEEecCCCCCCC-ccceeeecc----------CCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457 181 NKVVSASVDGLICTFDTGGDINDD-DLLESVINV----------GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN 249 (389)
Q Consensus 181 ~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~----------~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 249 (389)
..||+....|...|||+....... ......... .+....+.|. .+...|++++. ..+.++|+.+...
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~-~~~~~lLv~~r-~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV-SDSNRLLVCNR-SKLMLIDFESNWQ 236 (765)
T ss_pred ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec-CCCCEEEEEcC-CceEEEECCCCCc
Confidence 799999999999999993211111 111111111 1233477887 45555666654 4678999987765
Q ss_pred eEEeecccccccCCccCCCCCceeeecccCCCC-eEEEEEecCCceEEEEEecc
Q 016457 250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGE-NLWVIGGTGAGTVGYFPVNY 302 (389)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~g~~dg~i~i~~~~~ 302 (389)
...+...+ ....|.++.-++... .++|+|. ..|...++..
T Consensus 237 ~~~l~~~~----------~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~ 277 (765)
T PF10214_consen 237 TEYLVTAK----------TWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKS 277 (765)
T ss_pred cchhccCC----------ChhheeeEEecCCccceEEEEec---CeEEEEEccC
Confidence 43222211 336788888888733 2233333 3466667665
No 476
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.33 E-value=29 Score=34.65 Aligned_cols=173 Identities=10% Similarity=0.124 Sum_probs=93.8
Q ss_pred eEEEEeCCCceeeeeecCC----CCcEEEEEEeCCCCCCEEEEEec-----------CCeEEEEEcc-CCeEEEEEEcC-
Q 016457 61 VVKLYSPVTGQYSGECKGH----SSTVNQISFSGPSTPHVLHSCSS-----------DGTIRAWDTR-SFHEVWSVTAG- 123 (389)
Q Consensus 61 ~i~iw~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~l~s~~~-----------dg~i~iwd~~-~~~~~~~~~~~- 123 (389)
.|++.|..+++.+..+.-. .-.+.++.|+......++++|.. +|.++.|++- .++.+.-+...
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 3777777766655544311 12356666765553113333321 2335555542 33322222211
Q ss_pred -CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc-cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC
Q 016457 124 -SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH-VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI 201 (389)
Q Consensus 124 -~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 201 (389)
...+ .+..|..++++++- ...+++||+...++++.....+ ...|+.+.+... .+++|...-.+.++-.+..
T Consensus 934 ~~~~v--~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~---RI~VgD~qeSV~~~~y~~~- 1006 (1205)
T KOG1898|consen 934 IPGPV--GAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA---RIVVGDIQESVHFVRYRRE- 1006 (1205)
T ss_pred CCccc--eEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEeecce---EEEEeeccceEEEEEEecC-
Confidence 2334 34455666655554 4899999998887766554223 566777777653 6777776666766666522
Q ss_pred CCCccceeee--ccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457 202 NDDDLLESVI--NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW 244 (389)
Q Consensus 202 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 244 (389)
...+..+. ..+..|+.+.+. +...++.+..-|.+.+-.+
T Consensus 1007 --~n~l~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1007 --DNQLIVFADDPVPRHVTALELL--DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred --CCeEEEEeCCCccceeeEEEEe--cCCceeeccccCcEEEEEC
Confidence 12233322 234556666665 3346777777677666554
No 477
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.06 E-value=19 Score=36.67 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=54.5
Q ss_pred cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCC-CeEEEEEeCCCCeEEEeecCCeEEEEECcCCceee
Q 016457 82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA 160 (389)
Q Consensus 82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 160 (389)
....++|.|.. .+++.+...|.|+++-...-+.......... .+..+.+-.......+-..+..+.+|.......+.
T Consensus 37 ~~~~~afD~~q--~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~ 114 (993)
T KOG1983|consen 37 TPSALAFDPTQ--GLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF 114 (993)
T ss_pred CCcceeecccc--ceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee
Confidence 45678888888 7999999999999997653333222211110 11222222122222333334455555443222111
Q ss_pred eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457 161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG 198 (389)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (389)
....+++....+--. + +.+ ..+.+++||..
T Consensus 115 -----~~~~~~~~~~~~~~~-~-~~g-~~~~~~~~~~~ 144 (993)
T KOG1983|consen 115 -----LKQEITSFVTDPPPD-W-LIG-ENGLVKVSDVL 144 (993)
T ss_pred -----cCCcceeccCCCCcc-h-hcc-cCceeeEeeec
Confidence 233344443333221 3 445 78888888887
No 478
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.89 E-value=2.4 Score=40.22 Aligned_cols=100 Identities=15% Similarity=0.260 Sum_probs=58.6
Q ss_pred EEEEEEeCCCCCCEEEEEecCC-----eEEEEEcc---CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc
Q 016457 83 VNQISFSGPSTPHVLHSCSSDG-----TIRAWDTR---SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR 154 (389)
Q Consensus 83 v~~i~~~~~~~~~~l~s~~~dg-----~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 154 (389)
-..+.|-|.| ..++|-+.|| .|.++..+ .|+.-.... -...+..++|+ -...+++.+..+.|.+|-..
T Consensus 249 e~~LSWkpqg--S~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~-~dEk~~~~~wn-~~s~vlav~~~n~~~lwttk 324 (1243)
T COG5290 249 EHQLSWKPQG--SKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVG-CDEKAFLENWN-LLSTVLAVAEGNLLKLWTTK 324 (1243)
T ss_pred hhccccccCC--ceeeeeccCCCCCcceEEEEccCCcccCCccccCC-chhhhhhhhhh-HHHHHHHHhhcceEEEEEcc
Confidence 3458899999 5899877555 35555432 122211111 13456677776 34445555667899999876
Q ss_pred CCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457 155 NKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS 187 (389)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 187 (389)
+..-..... ..-..+.-+.|+|...+.++..+
T Consensus 325 NyhWYLK~e-~~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 325 NYHWYLKVE-RQIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred ceEEEEEEe-ecCCCcceeeeccccCcEEEEec
Confidence 654332222 23345777889998766555544
No 479
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.86 E-value=5 Score=37.82 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=44.1
Q ss_pred CeEEEEeCCCcEEEEecCCCCCCCcc--------------ceeee--------ccCCceeeEEEec---CCCcEEEEEec
Q 016457 181 NKVVSASVDGLICTFDTGGDINDDDL--------------LESVI--------NVGTSVGKVGFFG---ETNKHLWCLTH 235 (389)
Q Consensus 181 ~~l~~~~~d~~i~i~d~~~~~~~~~~--------------~~~~~--------~~~~~i~~~~~~~---~~~~~l~~~~~ 235 (389)
..++.+..||.+.............. +..+. ........+++.. .+..++++.+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 47888888999888887641100000 00000 0112344455542 25679999999
Q ss_pred CCcEEEEEcCCCceeEEeec
Q 016457 236 IETLSIWDWKDGQNVASFEN 255 (389)
Q Consensus 236 d~~i~i~d~~~~~~~~~~~~ 255 (389)
|+.+++||+.+++++.+...
T Consensus 239 D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 239 DHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TSEEEEEETTTTCEEEEEET
T ss_pred CCeEEEEECCCCeEEEEecc
Confidence 99999999999999777644
No 480
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=86.76 E-value=30 Score=33.03 Aligned_cols=246 Identities=10% Similarity=0.082 Sum_probs=127.3
Q ss_pred EEeecCCCCeEEEEecCCeEEEEeCC-Cceeeeeec-CCCCcEEEEEEeCCCC-CCEEEEEecCC-eEEEEEccCC----
Q 016457 43 EIVPKNDWSLMAVSLSTNVVKLYSPV-TGQYSGECK-GHSSTVNQISFSGPST-PHVLHSCSSDG-TIRAWDTRSF---- 114 (389)
Q Consensus 43 ~~~~~~~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~-~~~~~v~~i~~~~~~~-~~~l~s~~~dg-~i~iwd~~~~---- 114 (389)
+..++|+.+.+-.|=+...|.-|=+. +.+.+..+. ..+..|.|+....... ..+.+.|-.++ .-++-.+..+
T Consensus 32 s~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~ 111 (670)
T PF10395_consen 32 SDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGST 111 (670)
T ss_pred ecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccc
Confidence 44678888777777655555555432 456666654 2456677777654321 13555553443 3343333322
Q ss_pred -------e--EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc--eeeeeeecccCCeeEEEEec-----C
Q 016457 115 -------H--EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK--QVACLEESHVEDVTQVHFVP-----N 178 (389)
Q Consensus 115 -------~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~-----~ 178 (389)
+ ....++. .+.|-.+.+.+++..+++.-.+|.|.+||...+. .+..+...+...+.-=.|-+ +
T Consensus 112 ~~~~~~~e~~~~~~~kl-~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~ 190 (670)
T PF10395_consen 112 EDGTVNSETTNEFELKL-DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELEN 190 (670)
T ss_pred cccccCccccceEEEEc-ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccccc
Confidence 1 1223333 5789999999889999999999999999993222 11122211222111112211 2
Q ss_pred CCCeEEEEeC-C---CcEEEEecCCCCCCCccceee---eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457 179 NQNKVVSASV-D---GLICTFDTGGDINDDDLLESV---INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA 251 (389)
Q Consensus 179 ~~~~l~~~~~-d---~~i~i~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 251 (389)
+..++++.+. + -..+++.+... ...+..+ ...........|.-..|.+.-. .+++|.+|++.+.+..+
T Consensus 191 ~~~~ll~v~~~~~~k~~ykL~~l~~~---~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~ 265 (670)
T PF10395_consen 191 GKDLLLTVSQLSNSKLSYKLISLSNE---SSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQK 265 (670)
T ss_pred CCceEEEEEEcCCCcEEEEEEEeccC---CcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEE
Confidence 2235555544 3 23667777211 1222222 1222233333333244543333 77899999998888777
Q ss_pred EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457 252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG 304 (389)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~ 304 (389)
++.-...+... . ..+.++.- |..++ .|++ .+..|++.|+.-..
T Consensus 266 tI~l~~ii~~~-----~-~~~vSl~~-~s~nR-vLLs--~~nkIyLld~~~~s 308 (670)
T PF10395_consen 266 TISLPSIIDKE-----S-DDLVSLKP-PSPNR-VLLS--VNNKIYLLDLKFES 308 (670)
T ss_pred EEEechhhccc-----c-ccceEeec-CCCCe-EEEE--cCCEEEEEeehhhh
Confidence 76643222111 0 12333322 22233 3444 46689999986543
No 481
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=86.31 E-value=3.4 Score=22.57 Aligned_cols=21 Identities=5% Similarity=-0.031 Sum_probs=16.7
Q ss_pred CCCeEEEeecCCeEEEEECcC
Q 016457 135 STDYLLAAGCGSQIQFWDWRN 155 (389)
Q Consensus 135 ~~~~l~~~~~d~~i~iwd~~~ 155 (389)
.++.+++++.||.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 577899999999999999764
No 482
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=85.93 E-value=43 Score=34.13 Aligned_cols=181 Identities=12% Similarity=0.134 Sum_probs=96.2
Q ss_pred eEEEEEccCCeEEEEEEcC-CCCeEEEEEeC---------CCCeEEEeec---------CCeEEEEECcC-----Cce--
Q 016457 105 TIRAWDTRSFHEVWSVTAG-SQEIFCFSFGG---------STDYLLAAGC---------GSQIQFWDWRN-----KKQ-- 158 (389)
Q Consensus 105 ~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~---------~~~~l~~~~~---------d~~i~iwd~~~-----~~~-- 158 (389)
.|.+.+..+.+.+-.+... ...+++++..- ...++++|.. -|.++++|+-. +++
T Consensus 1005 ~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t 1084 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFT 1084 (1366)
T ss_pred eeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcc
Confidence 3455555555444443332 23345544321 1345666543 38999999743 222
Q ss_pred ---eeee-eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457 159 ---VACL-EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT 234 (389)
Q Consensus 159 ---~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 234 (389)
++.+ .+..+++|..++=- +| .|+++. ...|.+|++.... . -.-..+...+-.+.++... .++++.|.
T Consensus 1085 ~~KlKel~~eE~KGtVsavceV-~G--~l~~~~-GqKI~v~~l~r~~-~-ligVaFiD~~~yv~s~~~v---knlIl~gD 1155 (1366)
T KOG1896|consen 1085 KNKLKELYIEEQKGTVSAVCEV-RG--HLLSSQ-GQKIIVRKLDRDS-E-LIGVAFIDLPLYVHSMKVV---KNLILAGD 1155 (1366)
T ss_pred cceeeeeehhhcccceEEEEEe-cc--EEEEcc-CcEEEEEEeccCC-c-ceeeEEeccceeEEehhhh---hhheehhh
Confidence 2222 22455677766643 34 555554 5679999995211 0 0011112222222222221 33566666
Q ss_pred cCCcEEEEEcCC-CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457 235 HIETLSIWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG 304 (389)
Q Consensus 235 ~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~ 304 (389)
--..|.+.-... +..+..+.... ..-.+.++.|--+|..++++++..++.|++|-.....
T Consensus 1156 V~ksisfl~fqeep~rlsL~srd~----------~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1156 VMKSISFLGFQEEPYRLSLLSRDF----------EPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred hhhceEEEEEccCceEEEEeecCC----------chhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCC
Confidence 556666655432 22233332211 2356788899999999999999999999999776443
No 483
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.18 E-value=4.5 Score=22.14 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=25.0
Q ss_pred EEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEE
Q 016457 96 VLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSF 132 (389)
Q Consensus 96 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 132 (389)
++++...+++|.++|..+++.+..+... .....++|
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 4444556889999999999888888764 33444444
No 484
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.15 E-value=5.5 Score=35.37 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=91.1
Q ss_pred CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeee-ee-cC-CC---CcEE-EEEEeCCCCCCEEEEEecCCeEEEE-
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG-EC-KG-HS---STVN-QISFSGPSTPHVLHSCSSDGTIRAW- 109 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~-~~-~~-~~---~~v~-~i~~~~~~~~~~l~s~~~dg~i~iw- 109 (389)
...|..+-..|||+.+.+-+. .++.++++.+..... .+ .. .. ..|+ .+.....+ ..++.++.||.|.-|
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg--~SLLv~~~dG~vsQWF 296 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG--FSLLVVHEDGLVSQWF 296 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc--eeEEEEcCCCceeeee
Confidence 566777889999998887764 778888876542211 11 11 11 1122 11112233 568888899988877
Q ss_pred EccCC-----eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457 110 DTRSF-----HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 110 d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 184 (389)
|++.+ ..++.++....++..+.-..+.+-+++-...|++..+.....+.+..- .--..+.-++++|.+. .++
T Consensus 297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~~~~~~~~~Sp~~~-~Ll 373 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAYQAPQLVAMSPNQA-YLL 373 (733)
T ss_pred eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhhcCcceeeeCcccc-hhe
Confidence 55432 223333333445554444323344556666888888775444433222 1234677889999985 666
Q ss_pred EEeCCCcEEEEecCCC
Q 016457 185 SASVDGLICTFDTGGD 200 (389)
Q Consensus 185 ~~~~d~~i~i~d~~~~ 200 (389)
+- ..|.++++.+.+.
T Consensus 374 ~e-~~gki~~~~l~Nr 388 (733)
T COG4590 374 SE-DQGKIRLAQLENR 388 (733)
T ss_pred ee-cCCceEEEEecCC
Confidence 54 4678999988844
No 485
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.72 E-value=21 Score=29.38 Aligned_cols=147 Identities=9% Similarity=-0.022 Sum_probs=74.9
Q ss_pred EEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeec-C--CeEEEEECcC---Cceeeeee--ecccCCeeEEEEe
Q 016457 106 IRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGC-G--SQIQFWDWRN---KKQVACLE--ESHVEDVTQVHFV 176 (389)
Q Consensus 106 i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~---~~~~~~~~--~~~~~~v~~~~~~ 176 (389)
-.+||+.+++... +... ..-..+-.+.++|..+.++|. + ..+++++... ........ ......--+....
T Consensus 48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 4688988765532 2222 222333456778888887776 3 4688888654 11111100 0123334455667
Q ss_pred cCCCCeEEEEeCCCc-EEEEecCCCCCCCccceeee----ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457 177 PNNQNKVVSASVDGL-ICTFDTGGDINDDDLLESVI----NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA 251 (389)
Q Consensus 177 ~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 251 (389)
|+|+ .|+.|+...- ..+|.-............+. .......-..|.-++|++++.+..+. .|||..+.+.++
T Consensus 127 ~DG~-vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~ 203 (243)
T PF07250_consen 127 PDGR-VLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVR 203 (243)
T ss_pred CCCC-EEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence 8896 8887776643 33444321110000000000 11122222333337888887776543 367988887777
Q ss_pred Eeecc
Q 016457 252 SFENA 256 (389)
Q Consensus 252 ~~~~~ 256 (389)
.+...
T Consensus 204 ~lP~l 208 (243)
T PF07250_consen 204 TLPDL 208 (243)
T ss_pred eCCCC
Confidence 76643
No 486
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.63 E-value=32 Score=31.41 Aligned_cols=61 Identities=3% Similarity=-0.158 Sum_probs=35.3
Q ss_pred CceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457 215 TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG 281 (389)
Q Consensus 215 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 281 (389)
...+.|+|. +++.+|++--..|.|++++..++.... +........ .........++++|+-
T Consensus 30 ~~Pw~mafl-PDG~llVtER~~G~I~~v~~~~~~~~~-~~~l~~v~~----~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWG-PDNQLWVTERATGKILRVNPETGEVKV-VFTLPEIVN----DAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEc-CCCeEEEEEecCCEEEEEeCCCCceee-eecCCceec----cCCCCceeeEEECCCc
Confidence 456788998 677666555446999999865543211 111110000 0023678899999874
No 487
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=84.44 E-value=2.8 Score=21.58 Aligned_cols=27 Identities=4% Similarity=-0.006 Sum_probs=22.0
Q ss_pred CCeEEEeecCCeEEEEECcCCceeeee
Q 016457 136 TDYLLAAGCGSQIQFWDWRNKKQVACL 162 (389)
Q Consensus 136 ~~~l~~~~~d~~i~iwd~~~~~~~~~~ 162 (389)
++.+++++.+|.+..+|.++++.+.++
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 457888888999999999998877653
No 488
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=84.36 E-value=6.4 Score=26.22 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=36.6
Q ss_pred CCCeEEEEecCceeeeeecCcceEEEeecCCCCeEEEEec-CCeEEEEeCC
Q 016457 19 NVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLS-TNVVKLYSPV 68 (389)
Q Consensus 19 ~~~~i~~w~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~ 68 (389)
.-+.|..|+.++......+-..-+.+.++|++++|.+++. .+.|++|..+
T Consensus 34 ~~~~Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 34 PWGNVVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3467778887665544444556678999999998888765 6789998754
No 489
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.11 E-value=25 Score=29.74 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=55.7
Q ss_pred CCeEEEEecCc-eeeeeec--CcceEEEeecCCCCeEEEEe------cCCeEEEEeCCCceeeeeecC-----CCCcEEE
Q 016457 20 VNSIKRFGLKN-SIQTNFG--DDYVFEIVPKNDWSLMAVSL------STNVVKLYSPVTGQYSGECKG-----HSSTVNQ 85 (389)
Q Consensus 20 ~~~i~~w~~~~-~~~~~~~--~~~v~~~~~~~~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~-----~~~~v~~ 85 (389)
-..|.+||... ....+-. .+.|++|.|..+.++++.|. ....+..||+.+.. ...+.+ -.++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 35689999753 3333333 78999999997766777664 24578889987653 223332 2467888
Q ss_pred EEEeCCCCCCEEEEEe-cCC--eEEEEEcc
Q 016457 86 ISFSGPSTPHVLHSCS-SDG--TIRAWDTR 112 (389)
Q Consensus 86 i~~~~~~~~~~l~s~~-~dg--~i~iwd~~ 112 (389)
+.+......++.+.|. .++ .|..||=.
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 8875444324554544 233 35555533
No 490
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=84.01 E-value=2.9 Score=21.52 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=20.6
Q ss_pred eEEEEecCCeEEEEeCCCceeeeee
Q 016457 52 LMAVSLSTNVVKLYSPVTGQYSGEC 76 (389)
Q Consensus 52 ~l~~~~~d~~i~iw~~~~~~~~~~~ 76 (389)
.+++++.+|.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6777888999999999998877653
No 491
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.84 E-value=48 Score=32.89 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=98.0
Q ss_pred CcceEEEeec---C----CCCeEEEEecCCeEEEEeCCCc---------------eeeeeecC---CCCcEEEEEEeCCC
Q 016457 38 DDYVFEIVPK---N----DWSLMAVSLSTNVVKLYSPVTG---------------QYSGECKG---HSSTVNQISFSGPS 92 (389)
Q Consensus 38 ~~~v~~~~~~---~----~~~~l~~~~~d~~i~iw~~~~~---------------~~~~~~~~---~~~~v~~i~~~~~~ 92 (389)
..+|..|+|. . ..++|++=. ...+.|+...-. .++..+.. -..+..+++|+|..
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 6788888887 2 223555544 567777772211 22233321 23467889999977
Q ss_pred CCCEEEEEecCCeEEEEEccCC----eEEEEEE-cCC----------CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457 93 TPHVLHSCSSDGTIRAWDTRSF----HEVWSVT-AGS----------QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK 157 (389)
Q Consensus 93 ~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~-~~~----------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 157 (389)
. ..||.....|.-.||++... .....+. ... +.-..+.|.++-+.|+++.. ..+.++|+++..
T Consensus 158 ~-~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~ 235 (765)
T PF10214_consen 158 Q-RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNW 235 (765)
T ss_pred c-ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCC
Confidence 5 69999999999999999211 1111111 111 22336778767777777765 788899998776
Q ss_pred eee-eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457 158 QVA-CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG 199 (389)
Q Consensus 158 ~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (389)
... .........|..+.-+|..++.++.-+ ...|...|+..
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred ccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 533 222134567888888888443444443 36788888885
No 492
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=83.79 E-value=3.9 Score=20.26 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=20.6
Q ss_pred cceEEEeecCCCCeEEEEecCCeEEEEe
Q 016457 39 DYVFEIVPKNDWSLMAVSLSTNVVKLYS 66 (389)
Q Consensus 39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 66 (389)
+.|.+++..+. +++++.+.+.+|+|+
T Consensus 2 E~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence 45778887664 889999889999984
No 493
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=82.89 E-value=4.6 Score=21.80 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.1
Q ss_pred EEEEEecCCeEEEEEccCCeEEEEEEcC
Q 016457 96 VLHSCSSDGTIRAWDTRSFHEVWSVTAG 123 (389)
Q Consensus 96 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 123 (389)
.++.++.+|.|.-.|.++|+.+..++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566699999999999999999998864
No 494
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=82.75 E-value=4.1 Score=22.00 Aligned_cols=26 Identities=8% Similarity=-0.032 Sum_probs=22.7
Q ss_pred eEEEeecCCeEEEEECcCCceeeeee
Q 016457 138 YLLAAGCGSQIQFWDWRNKKQVACLE 163 (389)
Q Consensus 138 ~l~~~~~d~~i~iwd~~~~~~~~~~~ 163 (389)
.+++++.+|.|.-.|.++|+.+..+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 56777789999999999999998887
No 495
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=82.35 E-value=8.7 Score=36.98 Aligned_cols=141 Identities=12% Similarity=0.147 Sum_probs=83.3
Q ss_pred CCCCCccccCCCCeEEEEecCc-----eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCC-----Cceeeeee
Q 016457 9 QSQPKSQSCDNVNSIKRFGLKN-----SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV-----TGQYSGEC 76 (389)
Q Consensus 9 ~~~~~~~s~~~~~~i~~w~~~~-----~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~-----~~~~~~~~ 76 (389)
.+.|....+..++.|.++.... ....... ...+.++.+++. .+..|.-||++-.|--. .+++-..+
T Consensus 545 s~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~~~~ 622 (925)
T KOG3522|consen 545 SPHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPNISI 622 (925)
T ss_pred CCCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCcccc
Confidence 3455666677888999987641 1111111 566777777654 24445555555444211 02222333
Q ss_pred cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC---CCCeEEEEEeCCCCeEEEeecCCeEEEEEC
Q 016457 77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG---SQEIFCFSFGGSTDYLLAAGCGSQIQFWDW 153 (389)
Q Consensus 77 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 153 (389)
..-..+|...++..+ ++-++.+|.|.++...+....+....| ...|+++.+. +.+..++-.....+++++.
T Consensus 623 ~~g~lPvrsla~~ed-----~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~-~~gVwvafasG~~~rlfht 696 (925)
T KOG3522|consen 623 PTGSLPVRSLAFQED-----FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYL-DNGVWVAFASGDEERLFHT 696 (925)
T ss_pred ccCCccccchhhhhc-----eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEee-CCceEEEEcCCCEEEEecc
Confidence 334567888888643 455667899999998877666555544 5789999987 4455544444456666665
Q ss_pred cCCc
Q 016457 154 RNKK 157 (389)
Q Consensus 154 ~~~~ 157 (389)
++..
T Consensus 697 etl~ 700 (925)
T KOG3522|consen 697 ETLW 700 (925)
T ss_pred cccC
Confidence 5543
No 496
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=81.88 E-value=61 Score=32.64 Aligned_cols=175 Identities=13% Similarity=0.163 Sum_probs=95.4
Q ss_pred eEEEEEccCCeEEEEEEcCC----CCeEEEEEeCCCCe-EEEeec------------CCeEEEEECcCCceeeeeeeccc
Q 016457 105 TIRAWDTRSFHEVWSVTAGS----QEIFCFSFGGSTDY-LLAAGC------------GSQIQFWDWRNKKQVACLEESHV 167 (389)
Q Consensus 105 ~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~-l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~ 167 (389)
.|++.|..+++.+..+.... -.+..+.|+..+.. +++++. +|.++.|++-.......+. |.
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell--h~ 931 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL--HK 931 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeee--ec
Confidence 48888888887776665432 34566667644433 333332 2446777654332222222 33
Q ss_pred CCe--eEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457 168 EDV--TQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK 245 (389)
Q Consensus 168 ~~v--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 245 (389)
..+ .-.+..|... .+++| ....+++||+-..+...+... ......|..+.+. +..+++|.....+.++..+
T Consensus 932 T~~~~~v~Ai~~f~~-~~Lag-vG~~l~~YdlG~K~lLRk~e~--k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 932 TEIPGPVGAICPFQG-RVLAG-VGRFLRLYDLGKKKLLRKCEL--KFIPNRISSIQTY---GARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred cCCCccceEEeccCC-EEEEe-cccEEEEeeCChHHHHhhhhh--ccCceEEEEEeec---ceEEEEeeccceEEEEEEe
Confidence 322 2346667765 55554 467899999984422111111 1135567777764 4567777766655554433
Q ss_pred C-CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457 246 D-GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN 301 (389)
Q Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~ 301 (389)
. .+.+..+.... -...++.+.+-..+ -++.+..=|.+.+-.+.
T Consensus 1005 ~~~n~l~~fadD~----------~pR~Vt~~~~lD~~---tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1005 REDNQLIVFADDP----------VPRHVTALELLDYD---TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred cCCCeEEEEeCCC----------ccceeeEEEEecCC---ceeeccccCcEEEEECC
Confidence 2 34444554322 22456666655544 35666666777777654
No 497
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.30 E-value=6.6 Score=21.17 Aligned_cols=30 Identities=10% Similarity=0.177 Sum_probs=19.6
Q ss_pred ccCCeeEEEEecCCCCeEEEEeCC--CcEEEE
Q 016457 166 HVEDVTQVHFVPNNQNKVVSASVD--GLICTF 195 (389)
Q Consensus 166 ~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~ 195 (389)
....-....|+|+|+.++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445677889999998555555555 665555
No 498
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=81.15 E-value=40 Score=30.03 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=7.6
Q ss_pred eEEEEECcCCc
Q 016457 147 QIQFWDWRNKK 157 (389)
Q Consensus 147 ~i~iwd~~~~~ 157 (389)
.+..||..+.+
T Consensus 107 ~v~~YD~~~n~ 117 (376)
T PRK14131 107 DVYKYDPKTNS 117 (376)
T ss_pred cEEEEeCCCCE
Confidence 47778877654
No 499
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=80.92 E-value=42 Score=30.19 Aligned_cols=162 Identities=11% Similarity=0.055 Sum_probs=88.7
Q ss_pred CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee-eeeeecccC----Cee-EEEEecCCCCeEEEEeCCCcEEEE-ec
Q 016457 125 QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV-ACLEESHVE----DVT-QVHFVPNNQNKVVSASVDGLICTF-DT 197 (389)
Q Consensus 125 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~----~v~-~~~~~~~~~~~l~~~~~d~~i~i~-d~ 197 (389)
..+..+-..|+++.+.+-+. ..+.++++.+.... ..+.....+ .|+ .+..-.-+ .-+++++.||.|.-| |.
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG-FSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc-eeEEEEcCCCceeeeeee
Confidence 44556677888888877665 77888887654321 111101111 122 12222233 367888889988765 55
Q ss_pred CCCC-CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457 198 GGDI-NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH 276 (389)
Q Consensus 198 ~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (389)
+... .....++.+.-...++..+.-. .+.+-+++-+..|++.++.....+.+-. .. -...+.-++
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~------------~~~~~~~~~ 364 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLF-ER------------AYQAPQLVA 364 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceeh-hh------------hhcCcceee
Confidence 5321 1112222222222333333322 3345677778888888877544333321 11 113556688
Q ss_pred ccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457 277 YPGEGENLWVIGGTGAGTVGYFPVNYGGA 305 (389)
Q Consensus 277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~ 305 (389)
+||++. ++++- ..|.|+++.+++...
T Consensus 365 ~Sp~~~--~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 365 MSPNQA--YLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eCcccc--hheee-cCCceEEEEecCCCC
Confidence 999988 66554 557899999887543
No 500
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=80.42 E-value=38 Score=29.42 Aligned_cols=143 Identities=10% Similarity=0.030 Sum_probs=83.0
Q ss_pred CcceEEEeecCCCCeEEEEecCCe------EEEEeCCC--c--eee-----eeecCCCC--------cEEEEEEeCCCCC
Q 016457 38 DDYVFEIVPKNDWSLMAVSLSTNV------VKLYSPVT--G--QYS-----GECKGHSS--------TVNQISFSGPSTP 94 (389)
Q Consensus 38 ~~~v~~~~~~~~~~~l~~~~~d~~------i~iw~~~~--~--~~~-----~~~~~~~~--------~v~~i~~~~~~~~ 94 (389)
-+.+..+.+.+++..+++.+++|. +..+++.. + ..+ ..+....+ ..-+|++.+++
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-- 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-- 96 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC--
Confidence 466788999866656666677777 55555443 1 001 11111111 34478886676
Q ss_pred CEEEEEecC------CeEEEEEccCCeEEEEEE---------------cCCCCeEEEEEeCCCCeEEEeec-----CC--
Q 016457 95 HVLHSCSSD------GTIRAWDTRSFHEVWSVT---------------AGSQEIFCFSFGGSTDYLLAAGC-----GS-- 146 (389)
Q Consensus 95 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~-----d~-- 146 (389)
.++++.-.+ ..|..++.. |+.+..+. ..+....+|+++|++..|+++.. |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 577776666 678888866 65544431 12567889999999997777654 22
Q ss_pred e-------EEE--EECcC-Cceeeeee--e-c-----ccCCeeEEEEecCCCCeEE
Q 016457 147 Q-------IQF--WDWRN-KKQVACLE--E-S-----HVEDVTQVHFVPNNQNKVV 184 (389)
Q Consensus 147 ~-------i~i--wd~~~-~~~~~~~~--~-~-----~~~~v~~~~~~~~~~~~l~ 184 (389)
. +++ ||..+ ++....+. . . ....++.+.+.++++ +|+
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLv 230 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLV 230 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEE
Confidence 1 444 45444 22222221 0 1 345678888888875 443
Done!