Query 016458
Match_columns 389
No_of_seqs 905 out of 2227
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 07:02:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0286 G-protein beta subunit 100.0 1.8E-62 3.9E-67 370.6 37.9 340 10-369 2-341 (343)
2 KOG0271 Notchless-like WD40 re 100.0 3.1E-56 6.8E-61 348.8 29.0 299 57-382 105-444 (480)
3 KOG0271 Notchless-like WD40 re 100.0 3.6E-55 7.7E-60 342.9 25.7 304 45-375 135-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 6E-54 1.3E-58 339.9 25.0 285 63-375 171-458 (459)
5 KOG0279 G protein beta subunit 100.0 3.7E-47 8E-52 286.0 32.2 299 55-377 3-313 (315)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-48 2.4E-53 310.0 21.4 263 43-325 193-458 (459)
7 KOG0295 WD40 repeat-containing 100.0 1.1E-46 2.3E-51 293.4 27.6 334 4-376 57-405 (406)
8 KOG0315 G-protein beta subunit 100.0 4.5E-45 9.7E-50 270.4 29.7 283 81-386 12-298 (311)
9 KOG0265 U5 snRNP-specific prot 100.0 9.1E-45 2E-49 275.8 27.9 292 58-369 38-334 (338)
10 KOG0284 Polyadenylation factor 100.0 2.5E-46 5.4E-51 295.6 19.4 285 65-377 94-380 (464)
11 KOG0285 Pleiotropic regulator 100.0 3.5E-44 7.6E-49 279.0 26.5 298 56-379 140-441 (460)
12 KOG0645 WD40 repeat protein [G 100.0 8.4E-43 1.8E-47 261.5 31.6 294 57-377 4-311 (312)
13 KOG0273 Beta-transducin family 100.0 3.1E-43 6.7E-48 283.0 28.4 289 65-383 176-488 (524)
14 KOG0273 Beta-transducin family 100.0 9.1E-43 2E-47 280.3 30.2 278 68-376 236-522 (524)
15 cd00200 WD40 WD40 domain, foun 100.0 1.2E-41 2.5E-46 285.3 37.9 288 60-375 2-289 (289)
16 KOG0282 mRNA splicing factor [ 100.0 1.4E-44 3.1E-49 291.6 17.9 297 57-375 204-503 (503)
17 KOG0318 WD40 repeat stress pro 100.0 1.3E-41 2.8E-46 277.3 35.1 323 41-380 164-563 (603)
18 KOG0296 Angio-associated migra 100.0 1.3E-42 2.9E-47 270.8 27.5 289 59-377 56-398 (399)
19 KOG0279 G protein beta subunit 100.0 4.4E-42 9.6E-47 258.7 27.7 271 42-327 33-313 (315)
20 KOG0263 Transcription initiati 100.0 6.3E-43 1.4E-47 298.4 26.1 283 58-379 369-651 (707)
21 KOG0315 G-protein beta subunit 100.0 1.6E-41 3.4E-46 251.6 29.4 288 41-352 14-309 (311)
22 KOG0291 WD40-repeat-containing 100.0 2.2E-41 4.8E-46 287.2 33.9 309 51-383 291-618 (893)
23 KOG0286 G-protein beta subunit 100.0 2.4E-41 5.3E-46 256.3 30.6 303 3-325 2-343 (343)
24 KOG0266 WD40 repeat-containing 100.0 3.9E-41 8.4E-46 294.4 33.3 295 60-377 151-454 (456)
25 PLN00181 protein SPA1-RELATED; 100.0 2.1E-39 4.6E-44 304.2 41.0 290 63-376 479-792 (793)
26 KOG0316 Conserved WD40 repeat- 100.0 1.4E-40 3.1E-45 244.7 25.2 284 58-367 8-294 (307)
27 KOG0319 WD40-repeat-containing 100.0 1.6E-40 3.5E-45 281.3 29.1 328 38-380 75-580 (775)
28 KOG0291 WD40-repeat-containing 100.0 1.7E-39 3.6E-44 275.8 34.7 305 55-379 133-510 (893)
29 KOG0276 Vesicle coat complex C 100.0 1.2E-40 2.6E-45 277.2 26.9 288 59-369 5-295 (794)
30 KOG0293 WD40 repeat-containing 100.0 4.7E-40 1E-44 260.7 27.6 296 57-378 214-514 (519)
31 KOG0319 WD40-repeat-containing 100.0 3E-40 6.5E-45 279.7 27.4 314 46-378 302-620 (775)
32 KOG0263 Transcription initiati 100.0 9.7E-40 2.1E-44 279.0 24.8 216 53-283 437-652 (707)
33 KOG0284 Polyadenylation factor 100.0 6.6E-41 1.4E-45 265.0 14.2 255 52-326 123-379 (464)
34 KOG0318 WD40 repeat stress pro 100.0 1.3E-37 2.7E-42 254.1 33.6 302 55-384 47-357 (603)
35 KOG0643 Translation initiation 100.0 6.9E-39 1.5E-43 240.1 24.1 283 62-369 5-313 (327)
36 KOG0288 WD40 repeat protein Ti 100.0 3.3E-39 7.2E-44 255.7 21.8 291 56-369 164-457 (459)
37 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-36 3E-41 233.4 34.5 301 57-384 4-310 (311)
38 KOG0295 WD40 repeat-containing 100.0 3.9E-39 8.4E-44 251.4 20.1 266 42-326 125-405 (406)
39 KOG0285 Pleiotropic regulator 100.0 7.7E-39 1.7E-43 249.4 21.1 251 100-380 142-392 (460)
40 KOG0278 Serine/threonine kinas 100.0 5.2E-39 1.1E-43 238.6 19.1 290 62-382 9-302 (334)
41 KOG0281 Beta-TrCP (transducin 100.0 8.3E-40 1.8E-44 254.1 15.0 281 66-381 196-481 (499)
42 KOG0306 WD40-repeat-containing 100.0 1.1E-37 2.3E-42 264.8 27.7 293 61-379 367-666 (888)
43 KOG0300 WD40 repeat-containing 100.0 1.9E-37 4.1E-42 238.3 25.2 307 56-380 137-479 (481)
44 KOG0292 Vesicle coat complex C 100.0 9.6E-38 2.1E-42 269.6 26.1 286 62-369 4-317 (1202)
45 KOG0281 Beta-TrCP (transducin 100.0 2.4E-39 5.2E-44 251.5 14.5 269 40-332 210-482 (499)
46 KOG0310 Conserved WD40 repeat- 100.0 3.1E-37 6.7E-42 249.7 27.1 279 67-369 26-305 (487)
47 KOG1407 WD40 repeat protein [F 100.0 6E-37 1.3E-41 228.9 25.7 278 61-365 14-294 (313)
48 KOG0772 Uncharacterized conser 100.0 3.1E-37 6.7E-42 251.4 24.9 311 57-377 157-488 (641)
49 KOG0276 Vesicle coat complex C 100.0 4.7E-37 1E-41 255.9 25.5 261 46-323 34-295 (794)
50 KOG0275 Conserved WD40 repeat- 100.0 6.5E-38 1.4E-42 241.6 18.0 285 65-375 211-507 (508)
51 KOG0277 Peroxisomal targeting 100.0 6.7E-37 1.5E-41 227.8 22.6 282 71-376 12-308 (311)
52 KOG0306 WD40-repeat-containing 100.0 4.7E-36 1E-40 254.9 30.3 317 45-380 85-583 (888)
53 KOG0640 mRNA cleavage stimulat 100.0 4E-36 8.6E-41 230.2 26.1 300 61-377 106-426 (430)
54 KOG0299 U3 snoRNP-associated p 100.0 6.8E-36 1.5E-40 240.2 28.6 286 60-367 135-450 (479)
55 KOG0266 WD40 repeat-containing 100.0 7E-36 1.5E-40 261.4 28.4 265 44-327 178-454 (456)
56 KOG0305 Anaphase promoting com 100.0 1.2E-35 2.5E-40 249.4 28.2 275 72-379 182-463 (484)
57 KOG0283 WD40 repeat-containing 100.0 4.5E-36 9.7E-41 258.7 25.4 304 56-379 255-578 (712)
58 KOG0289 mRNA splicing factor [ 100.0 3.5E-35 7.6E-40 234.5 28.5 281 68-369 220-502 (506)
59 PLN00181 protein SPA1-RELATED; 100.0 3E-34 6.4E-39 269.6 39.8 270 88-379 457-740 (793)
60 KOG0313 Microtubule binding pr 100.0 1.5E-35 3.3E-40 232.6 25.1 282 65-369 103-414 (423)
61 KOG0268 Sof1-like rRNA process 100.0 3.9E-37 8.6E-42 240.2 16.1 288 59-378 58-346 (433)
62 KOG0296 Angio-associated migra 100.0 3.1E-35 6.6E-40 229.8 26.3 267 45-327 84-398 (399)
63 KOG0277 Peroxisomal targeting 100.0 3.3E-36 7.1E-41 224.2 19.7 256 54-326 48-308 (311)
64 KOG0265 U5 snRNP-specific prot 100.0 1.3E-35 2.7E-40 226.2 23.3 262 101-385 39-305 (338)
65 KOG0316 Conserved WD40 repeat- 100.0 1.4E-35 3E-40 218.5 22.3 251 101-382 9-262 (307)
66 KOG0274 Cdc4 and related F-box 100.0 5.3E-35 1.1E-39 254.8 29.1 297 48-383 188-488 (537)
67 PTZ00421 coronin; Provisional 100.0 8.2E-34 1.8E-38 247.2 36.4 274 68-354 21-314 (493)
68 KOG2096 WD40 repeat protein [G 100.0 1.2E-34 2.5E-39 222.9 27.1 307 49-369 63-398 (420)
69 KOG0973 Histone transcription 100.0 5E-35 1.1E-39 258.7 27.9 299 63-381 8-359 (942)
70 KOG0645 WD40 repeat protein [G 100.0 2.7E-34 5.8E-39 215.9 26.9 268 42-327 32-311 (312)
71 KOG0647 mRNA export protein (c 100.0 2.4E-34 5.2E-39 219.4 25.8 275 66-361 26-311 (347)
72 KOG0292 Vesicle coat complex C 100.0 9.3E-35 2E-39 251.4 26.0 269 46-329 30-323 (1202)
73 cd00200 WD40 WD40 domain, foun 100.0 8.6E-34 1.9E-38 237.6 30.9 260 46-325 30-289 (289)
74 KOG0282 mRNA splicing factor [ 100.0 4.6E-36 9.9E-41 242.6 15.4 262 99-383 204-468 (503)
75 KOG0641 WD40 repeat protein [G 100.0 5.5E-32 1.2E-36 198.7 31.4 299 55-377 21-349 (350)
76 PTZ00420 coronin; Provisional 100.0 5.3E-32 1.1E-36 236.9 35.9 257 85-355 50-318 (568)
77 KOG1036 Mitotic spindle checkp 100.0 1.7E-32 3.7E-37 210.1 27.3 273 67-363 13-294 (323)
78 KOG0278 Serine/threonine kinas 100.0 1.7E-34 3.8E-39 214.6 15.9 267 44-332 36-302 (334)
79 KOG0310 Conserved WD40 repeat- 100.0 1.1E-33 2.4E-38 229.1 21.8 255 52-327 53-309 (487)
80 KOG0313 Microtubule binding pr 100.0 4.3E-33 9.3E-38 218.9 24.2 265 47-327 125-418 (423)
81 KOG0274 Cdc4 and related F-box 100.0 1.2E-32 2.7E-37 240.0 28.8 267 42-335 223-490 (537)
82 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-31 2.5E-36 206.4 30.7 259 100-382 5-267 (311)
83 KOG0293 WD40 repeat-containing 100.0 1.3E-33 2.7E-38 224.3 20.2 251 56-328 258-514 (519)
84 KOG0264 Nucleosome remodeling 100.0 5.5E-33 1.2E-37 223.4 22.5 258 63-327 120-404 (422)
85 KOG0275 Conserved WD40 repeat- 100.0 2.4E-33 5.2E-38 216.5 17.5 260 109-384 213-474 (508)
86 PTZ00421 coronin; Provisional 100.0 2.3E-31 4.9E-36 232.0 31.8 256 111-382 22-295 (493)
87 KOG1407 WD40 repeat protein [F 100.0 2.5E-32 5.5E-37 204.3 21.1 251 103-380 14-264 (313)
88 KOG0308 Conserved WD40 repeat- 100.0 7.6E-33 1.7E-37 231.8 19.6 294 65-378 19-328 (735)
89 PTZ00420 coronin; Provisional 100.0 8.9E-31 1.9E-35 229.2 32.6 235 127-381 50-297 (568)
90 KOG0269 WD40 repeat-containing 100.0 9.3E-33 2E-37 235.7 19.1 284 68-369 40-336 (839)
91 KOG0301 Phospholipase A2-activ 100.0 2.5E-31 5.4E-36 224.4 27.2 285 56-380 3-291 (745)
92 KOG0643 Translation initiation 100.0 9.8E-32 2.1E-36 201.8 21.8 280 40-328 25-318 (327)
93 KOG0294 WD40 repeat-containing 100.0 4.3E-31 9.3E-36 202.9 25.7 266 56-352 32-306 (362)
94 KOG0305 Anaphase promoting com 100.0 1.7E-31 3.7E-36 224.5 25.6 258 51-329 201-463 (484)
95 KOG1539 WD repeat protein [Gen 100.0 1.2E-30 2.6E-35 224.6 29.7 325 43-383 178-612 (910)
96 KOG0294 WD40 repeat-containing 100.0 2.2E-30 4.8E-35 199.0 25.9 266 81-379 3-283 (362)
97 KOG0268 Sof1-like rRNA process 100.0 2.1E-32 4.5E-37 213.9 14.8 269 41-333 83-351 (433)
98 KOG2055 WD40 repeat protein [G 100.0 1.8E-30 3.9E-35 209.2 25.2 286 67-377 213-512 (514)
99 KOG1408 WD40 repeat protein [F 100.0 1.2E-30 2.6E-35 221.3 25.1 298 59-379 361-715 (1080)
100 KOG0264 Nucleosome remodeling 100.0 5.1E-31 1.1E-35 212.1 21.3 264 107-379 122-406 (422)
101 KOG4283 Transcription-coupled 100.0 4.1E-30 8.9E-35 195.9 24.6 290 64-376 40-364 (397)
102 KOG0639 Transducin-like enhanc 100.0 5.3E-31 1.1E-35 214.7 20.8 282 65-376 417-703 (705)
103 KOG0772 Uncharacterized conser 100.0 5.8E-31 1.3E-35 215.0 20.6 259 100-363 158-429 (641)
104 KOG0973 Histone transcription 100.0 1.6E-30 3.6E-35 230.3 24.9 258 57-328 59-356 (942)
105 KOG0289 mRNA splicing factor [ 100.0 4.8E-30 1E-34 205.3 24.5 256 51-326 245-505 (506)
106 KOG0641 WD40 repeat protein [G 100.0 5.3E-29 1.1E-33 183.1 28.0 259 57-327 79-349 (350)
107 KOG1332 Vesicle coat complex C 100.0 6.8E-31 1.5E-35 194.8 17.7 257 63-328 7-287 (299)
108 KOG0640 mRNA cleavage stimulat 100.0 1.1E-30 2.4E-35 200.4 19.0 265 102-379 105-385 (430)
109 KOG1274 WD40 repeat protein [G 100.0 2.4E-29 5.2E-34 218.9 29.7 278 64-369 10-296 (933)
110 KOG0288 WD40 repeat protein Ti 100.0 6.1E-31 1.3E-35 209.0 18.0 256 47-324 197-458 (459)
111 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 5.5E-28 1.2E-32 204.0 35.4 276 80-382 2-284 (300)
112 KOG4328 WD40 protein [Function 100.0 3.1E-29 6.8E-34 201.9 25.7 306 54-377 173-495 (498)
113 KOG0308 Conserved WD40 repeat- 100.0 4.8E-30 1.1E-34 215.2 19.5 326 40-382 40-398 (735)
114 KOG1273 WD40 repeat protein [G 100.0 7.5E-29 1.6E-33 190.8 24.1 289 70-378 26-323 (405)
115 KOG0650 WD40 repeat nucleolar 100.0 6E-29 1.3E-33 206.8 25.2 303 47-369 380-731 (733)
116 KOG0299 U3 snoRNP-associated p 100.0 3E-29 6.4E-34 202.2 22.5 259 102-379 135-412 (479)
117 KOG0300 WD40 repeat-containing 100.0 2E-29 4.4E-34 194.3 20.2 265 48-329 171-478 (481)
118 KOG1539 WD repeat protein [Gen 100.0 2.2E-28 4.9E-33 210.8 28.7 303 51-369 228-644 (910)
119 KOG0646 WD40 repeat protein [G 100.0 3.9E-29 8.4E-34 201.9 22.3 265 89-382 18-312 (476)
120 KOG2048 WD40 repeat protein [G 100.0 2.3E-27 4.9E-32 200.2 33.5 226 47-282 47-277 (691)
121 KOG0646 WD40 repeat protein [G 100.0 3.5E-29 7.6E-34 202.2 20.4 250 65-326 79-349 (476)
122 KOG1408 WD40 repeat protein [F 100.0 2.4E-28 5.3E-33 207.4 25.7 305 70-385 327-679 (1080)
123 KOG1034 Transcriptional repres 100.0 1.1E-28 2.3E-33 190.9 21.4 299 62-377 33-383 (385)
124 KOG1332 Vesicle coat complex C 100.0 3.2E-29 7E-34 186.0 17.2 257 106-377 8-286 (299)
125 KOG0647 mRNA export protein (c 100.0 2.7E-28 5.8E-33 186.6 22.5 246 106-379 24-283 (347)
126 KOG2445 Nuclear pore complex c 100.0 1.3E-27 2.8E-32 183.4 25.8 278 64-377 10-318 (361)
127 KOG2106 Uncharacterized conser 100.0 4.8E-27 1E-31 191.8 30.6 300 49-379 136-479 (626)
128 KOG0283 WD40 repeat-containing 100.0 5.3E-29 1.1E-33 215.3 20.2 261 101-382 258-537 (712)
129 KOG2106 Uncharacterized conser 100.0 2.1E-26 4.6E-31 188.0 33.8 298 51-378 184-522 (626)
130 KOG1274 WD40 repeat protein [G 100.0 1E-27 2.2E-32 208.9 26.8 251 106-378 10-263 (933)
131 KOG4378 Nuclear protein COP1 [ 100.0 1.2E-28 2.7E-33 200.7 19.3 287 46-355 11-305 (673)
132 KOG1036 Mitotic spindle checkp 100.0 2E-27 4.2E-32 182.5 23.4 242 108-381 12-266 (323)
133 KOG0321 WD40 repeat-containing 100.0 5.6E-28 1.2E-32 202.5 22.0 293 73-379 55-393 (720)
134 KOG1063 RNA polymerase II elon 100.0 1.9E-27 4.2E-32 201.0 25.3 300 62-379 262-650 (764)
135 KOG0302 Ribosome Assembly prot 100.0 8.8E-28 1.9E-32 189.1 21.2 257 57-325 141-436 (440)
136 KOG0301 Phospholipase A2-activ 100.0 1.3E-27 2.8E-32 202.1 23.3 257 40-327 28-288 (745)
137 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1E-25 2.2E-30 190.1 33.7 279 45-353 9-300 (300)
138 KOG0267 Microtubule severing p 100.0 2.3E-29 5E-34 213.6 11.2 257 80-366 5-261 (825)
139 KOG2048 WD40 repeat protein [G 100.0 1E-25 2.3E-30 190.2 32.8 290 58-369 16-315 (691)
140 KOG1063 RNA polymerase II elon 100.0 1.4E-26 3E-31 195.9 27.1 321 40-371 27-389 (764)
141 KOG0270 WD40 repeat-containing 100.0 1.7E-27 3.8E-32 191.3 18.6 248 70-332 176-454 (463)
142 KOG0267 Microtubule severing p 100.0 6.3E-29 1.4E-33 211.0 10.1 239 61-319 22-260 (825)
143 KOG0639 Transducin-like enhanc 100.0 1.5E-27 3.3E-32 194.7 17.3 250 107-382 417-668 (705)
144 KOG4283 Transcription-coupled 100.0 3.1E-26 6.8E-31 174.9 22.9 219 106-331 40-280 (397)
145 KOG2919 Guanine nucleotide-bin 100.0 1.5E-25 3.3E-30 173.3 24.2 286 70-368 52-365 (406)
146 KOG4328 WD40 protein [Function 100.0 2.1E-26 4.7E-31 185.7 20.2 275 95-382 172-455 (498)
147 KOG0269 WD40 repeat-containing 100.0 1.3E-27 2.9E-32 204.5 13.8 232 45-287 108-347 (839)
148 KOG0270 WD40 repeat-containing 100.0 2.1E-25 4.5E-30 179.4 24.8 291 72-382 130-454 (463)
149 KOG1273 WD40 repeat protein [G 99.9 4.5E-26 9.8E-31 175.6 19.3 248 112-383 26-286 (405)
150 KOG0302 Ribosome Assembly prot 99.9 1.2E-25 2.6E-30 177.2 20.8 253 107-366 149-432 (440)
151 KOG1009 Chromatin assembly com 99.9 2E-25 4.4E-30 177.5 22.3 294 67-381 13-376 (434)
152 KOG2096 WD40 repeat protein [G 99.9 2E-25 4.4E-30 172.3 21.4 270 103-383 80-366 (420)
153 KOG0307 Vesicle coat complex C 99.9 7.7E-27 1.7E-31 208.3 15.3 291 72-380 11-330 (1049)
154 KOG0322 G-protein beta subunit 99.9 4.5E-26 9.8E-31 171.3 16.6 294 58-376 5-322 (323)
155 KOG1188 WD40 repeat protein [G 99.9 2E-25 4.3E-30 173.8 19.4 286 80-379 41-348 (376)
156 KOG0307 Vesicle coat complex C 99.9 3.6E-26 7.9E-31 204.1 16.9 251 67-330 64-330 (1049)
157 KOG1538 Uncharacterized conser 99.9 6.7E-25 1.5E-29 185.5 22.3 274 69-378 14-294 (1081)
158 KOG1310 WD40 repeat protein [G 99.9 8.5E-25 1.8E-29 180.7 21.7 229 57-285 40-308 (758)
159 KOG1517 Guanine nucleotide bin 99.9 3.5E-24 7.6E-29 189.7 26.9 306 63-381 1060-1385(1387)
160 KOG2055 WD40 repeat protein [G 99.9 6.8E-25 1.5E-29 177.3 20.6 243 109-369 213-463 (514)
161 KOG0321 WD40 repeat-containing 99.9 6E-25 1.3E-29 184.5 20.0 256 113-383 53-353 (720)
162 KOG4227 WD40 repeat protein [G 99.9 2.5E-24 5.5E-29 171.0 21.5 299 58-377 47-387 (609)
163 KOG4378 Nuclear protein COP1 [ 99.9 2E-24 4.2E-29 176.4 19.8 265 89-379 12-282 (673)
164 KOG1587 Cytoplasmic dynein int 99.9 1.8E-22 3.8E-27 175.4 32.0 277 89-379 222-518 (555)
165 KOG1445 Tumor-specific antigen 99.9 2.3E-24 5.1E-29 181.2 18.3 126 58-191 70-202 (1012)
166 KOG1007 WD repeat protein TSSC 99.9 6.2E-24 1.3E-28 161.9 18.6 263 59-327 55-361 (370)
167 KOG0642 Cell-cycle nuclear pro 99.9 3.1E-24 6.7E-29 177.8 17.5 266 59-335 286-569 (577)
168 KOG1240 Protein kinase contain 99.9 3.1E-22 6.8E-27 180.1 28.5 317 47-369 1029-1429(1431)
169 COG2319 FOG: WD40 repeat [Gene 99.9 7.5E-21 1.6E-25 169.1 37.6 293 62-380 60-362 (466)
170 KOG1334 WD40 repeat protein [G 99.9 3.3E-24 7.1E-29 174.6 14.1 308 56-379 131-468 (559)
171 KOG0290 Conserved WD40 repeat- 99.9 6.2E-23 1.3E-27 156.7 19.2 250 65-323 94-361 (364)
172 KOG0644 Uncharacterized conser 99.9 1.5E-24 3.2E-29 187.6 10.9 283 57-369 180-464 (1113)
173 KOG1007 WD repeat protein TSSC 99.9 2.6E-22 5.7E-27 153.1 21.2 278 81-369 28-357 (370)
174 KOG1034 Transcriptional repres 99.9 1.6E-23 3.5E-28 162.5 13.0 253 66-327 88-383 (385)
175 COG2319 FOG: WD40 repeat [Gene 99.9 1E-19 2.2E-24 161.8 38.6 302 46-378 133-443 (466)
176 KOG1524 WD40 repeat-containing 99.9 2.3E-22 4.9E-27 166.0 19.2 263 65-369 12-282 (737)
177 KOG0303 Actin-binding protein 99.9 8E-22 1.7E-26 156.8 20.9 217 152-380 75-297 (472)
178 KOG0642 Cell-cycle nuclear pro 99.9 8.5E-23 1.8E-27 169.4 15.8 265 104-379 289-563 (577)
179 KOG2919 Guanine nucleotide-bin 99.9 3.7E-22 8E-27 154.7 18.2 238 69-318 106-361 (406)
180 KOG1538 Uncharacterized conser 99.9 3.4E-22 7.3E-27 169.4 19.5 255 48-326 34-292 (1081)
181 KOG1587 Cytoplasmic dynein int 99.9 1.4E-21 3.1E-26 169.7 23.7 259 66-328 241-517 (555)
182 KOG0649 WD40 repeat protein [G 99.9 3E-20 6.4E-25 138.6 27.2 275 69-370 12-313 (325)
183 PRK11028 6-phosphogluconolacto 99.9 3E-20 6.6E-25 158.1 31.6 284 82-381 5-310 (330)
184 KOG0303 Actin-binding protein 99.9 3.9E-21 8.5E-26 152.9 23.7 238 104-354 76-320 (472)
185 KOG0650 WD40 repeat nucleolar 99.9 3.9E-22 8.5E-27 166.6 18.7 251 101-371 392-678 (733)
186 KOG2110 Uncharacterized conser 99.9 1.3E-19 2.9E-24 143.2 31.5 240 67-328 5-249 (391)
187 KOG1272 WD40-repeat-containing 99.9 2.1E-23 4.6E-28 169.0 10.4 275 68-369 130-405 (545)
188 KOG2445 Nuclear pore complex c 99.9 4.6E-21 9.9E-26 147.7 21.9 213 154-378 9-257 (361)
189 KOG1523 Actin-related protein 99.9 1.4E-20 2.9E-25 145.9 23.4 214 63-283 6-239 (361)
190 KOG1963 WD40 repeat protein [G 99.9 4.7E-20 1E-24 161.1 28.5 298 65-378 203-539 (792)
191 KOG1188 WD40 repeat protein [G 99.9 2E-21 4.2E-26 151.8 16.7 272 46-326 49-345 (376)
192 KOG0649 WD40 repeat protein [G 99.9 4.7E-20 1E-24 137.6 22.6 247 111-377 12-274 (325)
193 KOG0290 Conserved WD40 repeat- 99.9 4.9E-20 1.1E-24 141.0 22.2 297 59-369 37-361 (364)
194 KOG1009 Chromatin assembly com 99.9 2E-20 4.4E-25 149.4 20.2 262 56-331 54-376 (434)
195 KOG0771 Prolactin regulatory e 99.9 5.5E-20 1.2E-24 147.8 21.2 196 162-369 148-350 (398)
196 KOG1963 WD40 repeat protein [G 99.9 8.6E-19 1.9E-23 153.3 29.4 313 49-382 39-380 (792)
197 PRK11028 6-phosphogluconolacto 99.9 5.3E-18 1.1E-22 144.4 33.2 262 57-327 25-304 (330)
198 KOG2394 WD40 protein DMR-N9 [G 99.9 2.1E-19 4.4E-24 148.8 21.9 277 69-383 125-458 (636)
199 PRK01742 tolB translocation pr 99.9 1.9E-19 4.2E-24 157.7 23.0 236 88-354 183-426 (429)
200 KOG2139 WD40 repeat protein [G 99.9 2E-18 4.3E-23 136.3 25.5 288 69-369 100-427 (445)
201 KOG2111 Uncharacterized conser 99.9 7.6E-18 1.6E-22 130.8 28.0 280 70-369 8-318 (346)
202 KOG2110 Uncharacterized conser 99.8 3.5E-18 7.6E-23 135.2 25.9 238 110-380 6-251 (391)
203 KOG1524 WD40 repeat-containing 99.8 5.4E-20 1.2E-24 152.2 16.2 208 80-324 76-283 (737)
204 KOG4227 WD40 repeat protein [G 99.8 2.8E-19 6.1E-24 142.5 18.5 265 104-378 51-323 (609)
205 KOG4497 Uncharacterized conser 99.8 7.5E-19 1.6E-23 137.0 20.1 281 72-380 13-394 (447)
206 PF02239 Cytochrom_D1: Cytochr 99.8 1E-16 2.2E-21 135.9 34.6 286 82-383 9-353 (369)
207 KOG1445 Tumor-specific antigen 99.8 1.2E-19 2.7E-24 153.1 16.2 242 79-330 591-847 (1012)
208 KOG0771 Prolactin regulatory e 99.8 2.2E-19 4.7E-24 144.4 15.4 199 113-328 148-355 (398)
209 KOG2321 WD40 repeat protein [G 99.8 7.8E-18 1.7E-22 140.7 23.9 277 65-369 49-339 (703)
210 KOG1240 Protein kinase contain 99.8 7.9E-18 1.7E-22 152.3 25.5 275 98-382 1037-1339(1431)
211 KOG1517 Guanine nucleotide bin 99.8 2.5E-18 5.5E-23 153.2 21.4 249 68-329 1110-1383(1387)
212 KOG1523 Actin-related protein 99.8 5E-18 1.1E-22 131.8 19.8 246 104-364 5-269 (361)
213 KOG0644 Uncharacterized conser 99.8 6.4E-20 1.4E-24 159.3 10.3 268 40-332 205-473 (1113)
214 KOG1310 WD40 repeat protein [G 99.8 7.2E-19 1.6E-23 146.0 15.5 225 100-335 41-311 (758)
215 KOG3881 Uncharacterized conser 99.8 1.2E-17 2.6E-22 133.1 21.1 273 65-354 53-342 (412)
216 PRK03629 tolB translocation pr 99.8 9.1E-17 2E-21 140.5 27.8 234 90-353 180-427 (429)
217 KOG2111 Uncharacterized conser 99.8 1.4E-16 3E-21 123.8 24.6 239 112-379 8-258 (346)
218 KOG0322 G-protein beta subunit 99.8 4E-18 8.6E-23 128.9 15.5 274 40-326 28-322 (323)
219 KOG1272 WD40-repeat-containing 99.8 5.9E-19 1.3E-23 143.5 9.9 252 105-387 125-376 (545)
220 KOG4497 Uncharacterized conser 99.8 3.1E-17 6.7E-22 128.1 18.7 290 44-366 68-425 (447)
221 PRK01742 tolB translocation pr 99.8 2.9E-17 6.3E-22 144.0 20.8 222 60-308 196-426 (429)
222 PRK04922 tolB translocation pr 99.8 1.4E-16 3E-21 140.1 24.6 235 89-353 184-432 (433)
223 PRK02889 tolB translocation pr 99.8 2.2E-16 4.7E-21 138.3 25.0 238 89-354 176-425 (427)
224 PRK05137 tolB translocation pr 99.8 1.4E-15 3.1E-20 133.9 27.8 233 90-353 183-432 (435)
225 PF02239 Cytochrom_D1: Cytochr 99.8 8.2E-15 1.8E-19 124.4 30.6 270 49-336 18-356 (369)
226 KOG2139 WD40 repeat protein [G 99.8 5.1E-16 1.1E-20 122.8 20.8 240 110-365 99-367 (445)
227 KOG1334 WD40 repeat protein [G 99.7 3.6E-17 7.7E-22 134.1 14.0 272 101-385 134-432 (559)
228 KOG3881 Uncharacterized conser 99.7 1E-15 2.2E-20 122.3 21.2 255 110-382 56-325 (412)
229 KOG1354 Serine/threonine prote 99.7 1.6E-15 3.5E-20 119.3 21.9 287 67-383 25-365 (433)
230 PF10282 Lactonase: Lactonase, 99.7 8E-14 1.7E-18 118.7 33.6 291 82-384 2-331 (345)
231 KOG1409 Uncharacterized conser 99.7 5.7E-16 1.2E-20 121.7 18.4 256 55-327 12-270 (404)
232 PF08662 eIF2A: Eukaryotic tra 99.7 7.6E-16 1.6E-20 118.8 19.0 155 209-381 8-183 (194)
233 KOG2315 Predicted translation 99.7 1.5E-14 3.2E-19 121.1 26.6 278 67-382 34-395 (566)
234 KOG2394 WD40 protein DMR-N9 [G 99.7 4.6E-16 1E-20 129.2 16.6 238 112-385 126-370 (636)
235 PRK04922 tolB translocation pr 99.7 3.1E-14 6.8E-19 125.3 28.4 216 131-379 184-413 (433)
236 PRK05137 tolB translocation pr 99.7 2.9E-14 6.3E-19 125.6 27.2 218 131-381 182-416 (435)
237 PRK03629 tolB translocation pr 99.7 5.7E-14 1.2E-18 123.0 28.4 216 132-380 180-409 (429)
238 KOG2321 WD40 repeat protein [G 99.7 7.7E-15 1.7E-19 123.1 21.0 248 109-383 51-308 (703)
239 PRK02889 tolB translocation pr 99.7 2.3E-14 5.1E-19 125.6 23.9 208 131-365 176-392 (427)
240 TIGR02800 propeller_TolB tol-p 99.7 5.7E-14 1.2E-18 124.0 26.6 232 90-351 171-416 (417)
241 PF08662 eIF2A: Eukaryotic tra 99.7 1.4E-14 3.1E-19 111.8 19.9 157 162-335 9-186 (194)
242 PF10282 Lactonase: Lactonase, 99.7 1.7E-12 3.8E-17 110.6 34.4 273 67-351 36-345 (345)
243 PRK04792 tolB translocation pr 99.7 1.2E-13 2.6E-18 121.5 26.3 234 90-353 199-446 (448)
244 KOG0280 Uncharacterized conser 99.7 9.9E-14 2.1E-18 107.1 22.2 276 88-381 45-337 (339)
245 KOG2314 Translation initiation 99.7 8.9E-14 1.9E-18 116.4 23.2 284 70-377 213-573 (698)
246 PRK00178 tolB translocation pr 99.6 3.5E-13 7.5E-18 119.1 27.6 235 90-354 180-428 (430)
247 KOG0280 Uncharacterized conser 99.6 6.1E-14 1.3E-18 108.2 18.7 205 68-282 70-286 (339)
248 TIGR02658 TTQ_MADH_Hv methylam 99.6 2.6E-11 5.6E-16 100.8 34.4 266 89-383 27-336 (352)
249 KOG0974 WD-repeat protein WDR6 99.6 3.3E-13 7.1E-18 121.1 24.5 194 70-280 90-288 (967)
250 COG5354 Uncharacterized protei 99.6 3.7E-12 7.9E-17 105.8 27.3 303 50-381 15-399 (561)
251 KOG4547 WD40 repeat-containing 99.6 5.1E-13 1.1E-17 112.8 22.5 191 76-281 2-221 (541)
252 PRK01029 tolB translocation pr 99.6 3.1E-12 6.8E-17 111.7 28.4 240 90-355 166-426 (428)
253 TIGR02658 TTQ_MADH_Hv methylam 99.6 2.1E-11 4.5E-16 101.4 31.6 263 49-335 29-338 (352)
254 COG2706 3-carboxymuconate cycl 99.6 5.1E-11 1.1E-15 95.4 31.6 278 63-352 35-345 (346)
255 KOG0974 WD-repeat protein WDR6 99.6 1.5E-13 3.3E-18 123.2 19.2 275 66-378 6-289 (967)
256 KOG2041 WD40 repeat protein [G 99.6 5.2E-13 1.1E-17 115.4 21.3 277 68-369 15-333 (1189)
257 KOG1064 RAVE (regulator of V-A 99.6 2E-14 4.2E-19 135.3 13.1 203 63-292 2204-2410(2439)
258 TIGR02800 propeller_TolB tol-p 99.6 1.7E-12 3.6E-17 114.7 24.8 206 132-366 171-387 (417)
259 KOG4190 Uncharacterized conser 99.6 1.6E-14 3.5E-19 121.0 11.1 293 59-369 727-1032(1034)
260 KOG0309 Conserved WD40 repeat- 99.6 4.6E-14 1E-18 122.0 13.8 291 67-380 24-342 (1081)
261 KOG4547 WD40 repeat-containing 99.6 7.5E-13 1.6E-17 111.8 20.5 190 171-378 5-221 (541)
262 COG2706 3-carboxymuconate cycl 99.6 4.4E-11 9.4E-16 95.7 29.1 285 88-382 15-328 (346)
263 KOG4532 WD40-like repeat conta 99.5 5.8E-12 1.3E-16 96.3 21.4 270 87-379 50-333 (344)
264 PRK04792 tolB translocation pr 99.5 3.5E-12 7.6E-17 112.3 23.3 222 61-307 211-446 (448)
265 KOG4714 Nucleoporin [Nuclear s 99.5 5.7E-13 1.2E-17 101.2 15.2 207 62-281 30-255 (319)
266 KOG1912 WD40 repeat protein [G 99.5 3.5E-12 7.5E-17 111.3 21.2 292 69-383 17-370 (1062)
267 TIGR03300 assembly_YfgL outer 99.5 4.1E-11 8.9E-16 104.2 28.1 271 79-383 65-344 (377)
268 KOG2315 Predicted translation 99.5 1.2E-11 2.6E-16 104.1 22.9 254 71-353 129-410 (566)
269 PLN02919 haloacid dehalogenase 99.5 4.2E-10 9.1E-15 108.4 36.7 252 71-331 571-892 (1057)
270 PRK00178 tolB translocation pr 99.5 2.4E-11 5.3E-16 107.4 26.5 215 132-379 180-408 (430)
271 PRK01029 tolB translocation pr 99.5 1.6E-11 3.4E-16 107.4 24.8 223 132-383 166-409 (428)
272 PF04762 IKI3: IKI3 family; I 99.5 1.4E-10 2.9E-15 109.7 32.2 296 67-379 75-458 (928)
273 KOG1064 RAVE (regulator of V-A 99.5 2.9E-13 6.3E-18 127.7 14.2 228 106-366 2205-2439(2439)
274 PLN02919 haloacid dehalogenase 99.5 1.5E-10 3.3E-15 111.4 32.6 255 113-381 571-892 (1057)
275 TIGR03300 assembly_YfgL outer 99.5 1.6E-10 3.5E-15 100.5 29.4 260 78-369 104-375 (377)
276 COG4946 Uncharacterized protei 99.5 3E-09 6.4E-14 88.3 31.8 155 214-382 327-482 (668)
277 KOG1409 Uncharacterized conser 99.4 1.3E-11 2.8E-16 97.7 16.8 198 67-281 68-271 (404)
278 KOG2041 WD40 repeat protein [G 99.4 5.4E-12 1.2E-16 109.3 15.7 243 110-365 15-280 (1189)
279 KOG4190 Uncharacterized conser 99.4 8.7E-13 1.9E-17 110.9 10.5 249 102-369 728-984 (1034)
280 KOG1354 Serine/threonine prote 99.4 1.6E-11 3.4E-16 97.2 15.9 209 68-283 85-362 (433)
281 COG5170 CDC55 Serine/threonine 99.4 6.3E-12 1.4E-16 98.2 12.8 257 67-326 26-366 (460)
282 COG5354 Uncharacterized protei 99.4 8.1E-10 1.8E-14 92.2 25.5 261 69-365 73-421 (561)
283 KOG1832 HIV-1 Vpr-binding prot 99.4 3.3E-13 7.2E-18 119.3 5.4 270 55-361 1089-1377(1516)
284 KOG1912 WD40 repeat protein [G 99.4 8.3E-10 1.8E-14 96.9 24.5 217 51-281 39-305 (1062)
285 PF04762 IKI3: IKI3 family; I 99.4 4.1E-09 9E-14 99.8 30.5 291 66-369 208-560 (928)
286 COG5170 CDC55 Serine/threonine 99.4 1.7E-10 3.7E-15 90.4 17.6 256 109-369 26-363 (460)
287 COG4946 Uncharacterized protei 99.3 3.7E-09 7.9E-14 87.8 24.5 224 117-362 274-507 (668)
288 KOG1645 RING-finger-containing 99.3 1.1E-09 2.5E-14 88.7 20.8 262 91-369 175-457 (463)
289 PF08450 SGL: SMP-30/Gluconola 99.3 2.1E-08 4.5E-13 81.7 29.0 221 72-316 4-244 (246)
290 PF15492 Nbas_N: Neuroblastoma 99.3 8.5E-09 1.8E-13 80.4 24.7 241 72-335 2-267 (282)
291 KOG4532 WD40-like repeat conta 99.3 1.8E-09 3.9E-14 82.9 20.6 244 72-329 72-333 (344)
292 PF08450 SGL: SMP-30/Gluconola 99.3 8.2E-08 1.8E-12 78.2 31.7 224 114-361 4-243 (246)
293 KOG2314 Translation initiation 99.3 1.4E-09 3E-14 91.9 20.9 246 52-319 236-559 (698)
294 KOG3914 WD repeat protein WDR4 99.3 7.6E-11 1.7E-15 95.3 12.8 166 112-290 65-233 (390)
295 PF15492 Nbas_N: Neuroblastoma 99.3 4.6E-09 1E-13 81.8 22.0 206 70-293 46-272 (282)
296 KOG2695 WD40 repeat protein [G 99.3 1.8E-11 3.9E-16 96.9 9.0 176 165-352 218-401 (425)
297 PRK04043 tolB translocation pr 99.3 9.3E-09 2E-13 89.5 26.1 213 90-329 170-402 (419)
298 PRK11138 outer membrane biogen 99.3 1E-08 2.2E-13 89.6 26.1 273 78-382 68-358 (394)
299 KOG4714 Nucleoporin [Nuclear s 99.3 1.5E-10 3.2E-15 88.3 11.9 166 62-238 84-255 (319)
300 PRK04043 tolB translocation pr 99.3 1.8E-08 3.9E-13 87.8 26.5 183 160-364 189-388 (419)
301 KOG0882 Cyclophilin-related pe 99.2 3.3E-10 7.2E-15 93.1 14.1 291 65-369 7-368 (558)
302 PF13360 PQQ_2: PQQ-like domai 99.2 4.4E-08 9.5E-13 79.5 25.8 223 88-334 2-237 (238)
303 KOG1275 PAB-dependent poly(A) 99.2 8.2E-10 1.8E-14 98.6 15.5 180 171-375 147-340 (1118)
304 KOG0309 Conserved WD40 repeat- 99.2 1.4E-10 3E-15 101.1 10.2 216 56-281 103-340 (1081)
305 KOG3914 WD repeat protein WDR4 99.2 7.7E-10 1.7E-14 89.7 13.8 156 212-382 68-228 (390)
306 PF13360 PQQ_2: PQQ-like domai 99.2 6.4E-08 1.4E-12 78.6 25.4 189 172-382 37-235 (238)
307 PRK11138 outer membrane biogen 99.2 6.5E-08 1.4E-12 84.6 26.6 258 79-369 120-390 (394)
308 KOG0882 Cyclophilin-related pe 99.1 3.1E-09 6.8E-14 87.5 14.7 260 108-382 8-310 (558)
309 PF00400 WD40: WD domain, G-be 99.1 2.6E-10 5.7E-15 63.0 5.9 38 58-95 2-39 (39)
310 PF07433 DUF1513: Protein of u 99.1 4.7E-07 1E-11 73.1 25.9 234 70-323 7-281 (305)
311 KOG2695 WD40 repeat protein [G 99.1 6.3E-10 1.4E-14 88.4 9.2 164 125-306 228-401 (425)
312 PF07433 DUF1513: Protein of u 99.1 8.8E-07 1.9E-11 71.6 26.9 231 112-365 7-278 (305)
313 KOG1645 RING-finger-containing 99.1 1.4E-08 2.9E-13 82.7 16.4 258 52-327 178-461 (463)
314 KOG1275 PAB-dependent poly(A) 99.1 5.5E-09 1.2E-13 93.5 15.4 181 80-278 148-340 (1118)
315 PF06433 Me-amine-dh_H: Methyl 99.0 3E-06 6.5E-11 69.4 28.5 247 72-336 40-329 (342)
316 PF08596 Lgl_C: Lethal giant l 99.0 2.5E-07 5.4E-12 79.3 23.1 283 69-366 3-329 (395)
317 KOG3617 WD40 and TPR repeat-co 99.0 2.7E-08 6E-13 88.6 16.2 282 71-368 19-380 (1416)
318 KOG2114 Vacuolar assembly/sort 99.0 4.1E-07 8.9E-12 81.5 23.1 209 69-289 27-252 (933)
319 KOG2114 Vacuolar assembly/sort 99.0 3.2E-07 6.9E-12 82.1 21.7 205 116-335 30-251 (933)
320 KOG1920 IkappaB kinase complex 99.0 7.6E-07 1.7E-11 82.8 24.7 245 68-329 69-324 (1265)
321 PF11768 DUF3312: Protein of u 98.9 2.1E-05 4.4E-10 68.3 31.1 118 160-283 207-332 (545)
322 KOG3621 WD40 repeat-containing 98.9 1.2E-06 2.6E-11 76.9 22.5 154 68-226 34-188 (726)
323 KOG2066 Vacuolar assembly/sort 98.9 3E-07 6.5E-12 81.7 19.1 188 110-327 40-233 (846)
324 PF14583 Pectate_lyase22: Olig 98.9 1.4E-05 2.9E-10 67.0 27.5 276 74-369 42-377 (386)
325 cd00216 PQQ_DH Dehydrogenases 98.9 6.2E-06 1.3E-10 74.0 27.8 278 79-383 61-430 (488)
326 KOG1920 IkappaB kinase complex 98.9 2E-06 4.4E-11 80.1 24.4 244 110-378 69-323 (1265)
327 KOG4649 PQQ (pyrrolo-quinoline 98.9 1.6E-05 3.4E-10 61.7 26.1 105 79-191 63-167 (354)
328 KOG1008 Uncharacterized conser 98.9 2.4E-09 5.3E-14 92.1 4.9 203 69-281 58-276 (783)
329 KOG1008 Uncharacterized conser 98.8 1.6E-09 3.5E-14 93.2 2.1 209 110-327 57-275 (783)
330 KOG1832 HIV-1 Vpr-binding prot 98.8 6E-09 1.3E-13 93.1 5.0 202 150-382 1093-1296(1516)
331 PF00400 WD40: WD domain, G-be 98.8 2.3E-08 4.9E-13 55.1 5.5 39 329-375 1-39 (39)
332 PF06977 SdiA-regulated: SdiA- 98.8 6.9E-06 1.5E-10 65.5 21.3 209 153-369 16-246 (248)
333 KOG2066 Vacuolar assembly/sort 98.8 1.8E-06 3.8E-11 77.0 18.9 161 63-237 54-233 (846)
334 PF06433 Me-amine-dh_H: Methyl 98.8 2.8E-05 6.1E-10 63.9 24.5 267 89-383 17-326 (342)
335 PF04841 Vps16_N: Vps16, N-ter 98.7 0.00011 2.4E-09 64.2 29.4 235 73-325 34-285 (410)
336 PRK02888 nitrous-oxide reducta 98.7 6.6E-06 1.4E-10 73.0 21.5 136 218-362 287-450 (635)
337 KOG4649 PQQ (pyrrolo-quinoline 98.7 6.4E-05 1.4E-09 58.4 25.0 184 80-286 24-212 (354)
338 cd00216 PQQ_DH Dehydrogenases 98.7 0.00011 2.5E-09 66.0 29.2 243 80-336 111-433 (488)
339 COG3391 Uncharacterized conser 98.7 0.00019 4.1E-09 62.3 29.9 269 91-383 13-289 (381)
340 PF06977 SdiA-regulated: SdiA- 98.7 5.2E-05 1.1E-09 60.6 23.3 212 60-277 14-247 (248)
341 PF00930 DPPIV_N: Dipeptidyl p 98.7 2.8E-05 6E-10 66.9 23.3 269 76-363 1-347 (353)
342 PRK02888 nitrous-oxide reducta 98.5 2.2E-05 4.7E-10 69.9 19.6 220 75-316 200-450 (635)
343 PF04841 Vps16_N: Vps16, N-ter 98.5 0.00027 5.8E-09 61.8 26.4 180 159-356 81-272 (410)
344 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.5 0.00068 1.5E-08 61.4 30.7 286 79-382 69-495 (527)
345 COG0823 TolB Periplasmic compo 98.5 3.7E-05 8E-10 66.9 20.3 199 99-317 182-389 (425)
346 PF03178 CPSF_A: CPSF A subuni 98.5 0.00015 3.3E-09 61.6 23.7 221 89-324 2-262 (321)
347 PF04053 Coatomer_WDAD: Coatom 98.5 0.00038 8.3E-09 61.0 26.0 225 62-327 27-262 (443)
348 PF04053 Coatomer_WDAD: Coatom 98.5 0.00022 4.7E-09 62.5 24.4 222 108-378 31-263 (443)
349 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00021 4.5E-09 61.6 23.4 242 67-317 42-347 (353)
350 KOG3617 WD40 and TPR repeat-co 98.4 1.2E-05 2.5E-10 72.6 15.4 110 112-237 18-131 (1416)
351 COG3386 Gluconolactonase [Carb 98.4 0.00041 8.8E-09 57.6 23.3 224 116-362 31-274 (307)
352 COG0823 TolB Periplasmic compo 98.4 3.8E-05 8.2E-10 66.9 18.0 189 154-361 188-387 (425)
353 PF03178 CPSF_A: CPSF A subuni 98.4 0.00034 7.4E-09 59.5 23.7 186 171-369 42-261 (321)
354 PF08596 Lgl_C: Lethal giant l 98.4 5.4E-05 1.2E-09 65.2 18.6 208 56-270 75-326 (395)
355 PF11768 DUF3312: Protein of u 98.4 0.0011 2.3E-08 58.0 31.3 71 299-379 261-331 (545)
356 PF08553 VID27: VID27 cytoplas 98.4 1.7E-05 3.7E-10 73.1 15.5 143 172-326 494-646 (794)
357 COG3391 Uncharacterized conser 98.4 0.0014 2.9E-08 57.1 28.4 265 69-353 32-308 (381)
358 KOG3621 WD40 repeat-containing 98.4 5.2E-06 1.1E-10 73.1 10.8 147 209-361 36-187 (726)
359 PF00780 CNH: CNH domain; Int 98.3 0.0011 2.4E-08 55.1 24.1 236 119-383 5-261 (275)
360 PF02897 Peptidase_S9_N: Proly 98.3 0.002 4.4E-08 57.1 30.8 246 70-332 126-409 (414)
361 PF00780 CNH: CNH domain; Int 98.3 0.0015 3.2E-08 54.4 27.3 231 77-335 5-263 (275)
362 KOG4640 Anaphase-promoting com 98.2 1E-05 2.3E-10 70.4 9.5 94 251-353 21-115 (665)
363 PF08553 VID27: VID27 cytoplas 98.2 6.9E-05 1.5E-09 69.3 15.2 145 218-368 492-643 (794)
364 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00024 5.1E-09 48.1 13.4 101 70-184 2-109 (111)
365 KOG2444 WD40 repeat protein [G 98.2 3.5E-06 7.6E-11 64.0 5.0 143 221-378 32-178 (238)
366 smart00320 WD40 WD40 repeats. 98.2 6.9E-06 1.5E-10 44.7 5.2 38 58-95 3-40 (40)
367 KOG1897 Damage-specific DNA bi 98.1 0.0078 1.7E-07 56.2 27.3 290 67-379 530-858 (1096)
368 KOG2395 Protein involved in va 98.1 0.00043 9.3E-09 59.6 16.3 142 221-369 348-497 (644)
369 KOG4640 Anaphase-promoting com 98.1 2.2E-05 4.9E-10 68.4 9.0 94 68-168 21-115 (665)
370 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.0023 4.9E-08 55.3 19.7 80 299-382 309-403 (415)
371 PF02897 Peptidase_S9_N: Proly 98.0 0.0096 2.1E-07 52.8 27.5 249 112-385 126-412 (414)
372 KOG4499 Ca2+-binding protein R 98.0 0.0045 9.7E-08 47.8 19.1 139 206-353 108-263 (310)
373 PF14583 Pectate_lyase22: Olig 97.9 0.01 2.2E-07 50.3 24.2 245 95-364 16-303 (386)
374 COG3204 Uncharacterized protei 97.9 0.0075 1.6E-07 48.4 19.8 176 63-239 81-265 (316)
375 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.002 4.3E-08 43.7 13.9 101 161-275 2-109 (111)
376 COG3490 Uncharacterized protei 97.9 0.0033 7.1E-08 50.0 16.8 213 162-383 71-316 (366)
377 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.0097 2.1E-07 54.1 22.2 200 172-382 70-338 (527)
378 PHA02713 hypothetical protein; 97.9 0.0031 6.6E-08 57.8 19.0 222 90-332 273-538 (557)
379 PRK13616 lipoprotein LpqB; Pro 97.8 0.0042 9.2E-08 56.9 19.3 189 68-275 350-563 (591)
380 PF05694 SBP56: 56kDa selenium 97.8 0.011 2.4E-07 50.6 19.9 235 120-362 86-392 (461)
381 PF05096 Glu_cyclase_2: Glutam 97.8 0.011 2.5E-07 47.3 26.1 192 159-362 45-249 (264)
382 COG3386 Gluconolactonase [Carb 97.8 0.017 3.6E-07 48.3 22.5 224 73-317 30-275 (307)
383 KOG4441 Proteins containing BT 97.8 0.014 3E-07 53.6 21.6 232 77-330 283-549 (571)
384 KOG2395 Protein involved in va 97.8 0.0016 3.4E-08 56.3 14.2 142 172-326 347-499 (644)
385 PHA02713 hypothetical protein; 97.7 0.002 4.3E-08 59.0 15.9 192 78-285 303-538 (557)
386 KOG2444 WD40 repeat protein [G 97.7 6E-05 1.3E-09 57.5 4.9 106 171-281 70-178 (238)
387 PRK13616 lipoprotein LpqB; Pro 97.7 0.0037 8.1E-08 57.2 17.2 160 207-377 350-525 (591)
388 smart00320 WD40 WD40 repeats. 97.7 0.00017 3.7E-09 38.8 5.3 32 340-375 9-40 (40)
389 PF07995 GSDH: Glucose / Sorbo 97.6 0.042 9E-07 46.9 21.8 253 111-368 3-330 (331)
390 KOG2079 Vacuolar assembly/sort 97.5 0.00071 1.5E-08 63.2 9.9 104 218-325 98-201 (1206)
391 PF12894 Apc4_WD40: Anaphase-p 97.5 0.00049 1.1E-08 38.8 5.5 34 67-101 11-44 (47)
392 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.021 4.5E-07 49.6 17.9 86 250-336 307-407 (415)
393 COG3490 Uncharacterized protei 97.5 0.025 5.5E-07 45.3 16.6 238 71-325 71-346 (366)
394 KOG4441 Proteins containing BT 97.5 0.049 1.1E-06 50.1 21.0 226 118-368 282-536 (571)
395 KOG2280 Vacuolar assembly/sort 97.5 0.07 1.5E-06 48.7 20.8 226 67-309 43-271 (829)
396 KOG2079 Vacuolar assembly/sort 97.5 0.00062 1.4E-08 63.6 8.4 101 261-366 98-198 (1206)
397 PF14727 PHTB1_N: PTHB1 N-term 97.4 0.076 1.6E-06 46.3 24.3 155 120-279 36-203 (418)
398 PF07995 GSDH: Glucose / Sorbo 97.4 0.068 1.5E-06 45.6 20.8 247 69-322 3-330 (331)
399 TIGR03074 PQQ_membr_DH membran 97.4 0.14 3E-06 48.7 24.1 203 172-382 195-482 (764)
400 PF10647 Gmad1: Lipoprotein Lp 97.3 0.063 1.4E-06 43.8 18.1 152 208-366 25-188 (253)
401 COG3204 Uncharacterized protei 97.3 0.06 1.3E-06 43.5 18.5 206 155-368 82-307 (316)
402 COG5276 Uncharacterized conser 97.2 0.076 1.6E-06 42.9 25.9 280 68-377 87-369 (370)
403 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0018 3.9E-08 36.6 5.3 32 299-331 13-44 (47)
404 PHA03098 kelch-like protein; P 97.1 0.051 1.1E-06 50.0 17.3 188 78-283 294-514 (534)
405 PF05096 Glu_cyclase_2: Glutam 97.1 0.11 2.3E-06 41.9 23.6 199 57-270 33-250 (264)
406 KOG4499 Ca2+-binding protein R 97.1 0.093 2E-06 40.9 17.6 208 80-307 28-263 (310)
407 PF10168 Nup88: Nuclear pore c 97.0 0.32 7E-06 45.9 22.9 81 110-191 85-181 (717)
408 COG3823 Glutamine cyclotransfe 97.0 0.099 2.1E-06 39.9 15.2 180 172-361 57-247 (262)
409 PHA03098 kelch-like protein; P 96.9 0.075 1.6E-06 49.0 16.7 187 172-380 296-514 (534)
410 PF15390 DUF4613: Domain of un 96.9 0.14 3E-06 45.6 16.8 121 159-280 57-186 (671)
411 KOG3630 Nuclear pore complex, 96.9 0.019 4.2E-07 54.6 12.4 152 160-314 102-260 (1405)
412 KOG2280 Vacuolar assembly/sort 96.9 0.18 3.9E-06 46.3 17.6 201 130-355 63-271 (829)
413 PF15390 DUF4613: Domain of un 96.9 0.098 2.1E-06 46.5 15.4 160 207-382 20-191 (671)
414 PHA02790 Kelch-like protein; P 96.9 0.16 3.4E-06 46.0 17.6 190 172-385 273-478 (480)
415 PHA02790 Kelch-like protein; P 96.8 0.22 4.7E-06 45.1 17.8 186 78-282 271-472 (480)
416 KOG2247 WD40 repeat-containing 96.7 0.00058 1.3E-08 58.3 1.1 150 112-278 37-186 (615)
417 PF14870 PSII_BNR: Photosynthe 96.6 0.32 6.9E-06 40.6 33.9 277 67-369 16-300 (302)
418 KOG3630 Nuclear pore complex, 96.6 0.037 8E-07 52.8 11.9 150 111-268 102-261 (1405)
419 TIGR03074 PQQ_membr_DH membran 96.6 0.7 1.5E-05 44.1 24.0 164 172-336 261-486 (764)
420 TIGR03118 PEPCTERM_chp_1 conse 96.6 0.32 6.8E-06 39.8 22.2 215 160-382 24-284 (336)
421 TIGR02604 Piru_Ver_Nterm putat 96.6 0.37 8E-06 42.0 17.1 149 207-364 14-204 (367)
422 COG3292 Predicted periplasmic 96.5 0.54 1.2E-05 41.9 17.6 275 67-369 164-443 (671)
423 KOG1897 Damage-specific DNA bi 96.4 0.91 2E-05 43.3 30.9 117 209-327 490-613 (1096)
424 PF12234 Rav1p_C: RAVE protein 96.4 0.21 4.5E-06 45.9 15.0 113 209-326 32-155 (631)
425 PF13449 Phytase-like: Esteras 96.4 0.49 1.1E-05 40.4 16.6 153 206-360 19-231 (326)
426 TIGR02604 Piru_Ver_Nterm putat 96.3 0.64 1.4E-05 40.5 24.9 148 69-226 15-202 (367)
427 PF10647 Gmad1: Lipoprotein Lp 96.3 0.47 1E-05 38.8 20.2 152 160-320 25-188 (253)
428 PF12234 Rav1p_C: RAVE protein 96.3 0.24 5.2E-06 45.5 14.7 128 59-189 21-156 (631)
429 KOG2377 Uncharacterized conser 96.3 0.21 4.5E-06 43.1 13.2 128 228-362 42-172 (657)
430 PF14870 PSII_BNR: Photosynthe 96.3 0.55 1.2E-05 39.2 30.0 237 109-368 16-256 (302)
431 COG5167 VID27 Protein involved 96.1 0.28 6E-06 43.0 13.4 134 218-365 478-625 (776)
432 COG5276 Uncharacterized conser 96.1 0.59 1.3E-05 38.0 24.2 198 111-328 88-286 (370)
433 COG5167 VID27 Protein involved 96.0 0.34 7.3E-06 42.5 13.4 141 173-327 482-632 (776)
434 PF14727 PHTB1_N: PTHB1 N-term 96.0 0.96 2.1E-05 39.7 32.6 268 79-369 37-356 (418)
435 PF05694 SBP56: 56kDa selenium 96.0 0.93 2E-05 39.4 22.3 199 172-379 88-344 (461)
436 TIGR03118 PEPCTERM_chp_1 conse 96.0 0.72 1.6E-05 37.9 23.4 234 111-353 24-307 (336)
437 PF08728 CRT10: CRT10; InterP 95.9 0.62 1.3E-05 43.4 15.5 108 171-279 114-245 (717)
438 PF08728 CRT10: CRT10; InterP 95.9 0.43 9.4E-06 44.4 14.3 118 253-376 103-245 (717)
439 PF10313 DUF2415: Uncharacteri 95.7 0.083 1.8E-06 28.9 5.6 31 68-98 1-34 (43)
440 KOG2377 Uncharacterized conser 95.7 1.3 2.8E-05 38.5 17.9 120 65-192 64-188 (657)
441 PRK13684 Ycf48-like protein; P 95.7 1.2 2.6E-05 38.2 28.0 277 67-369 45-327 (334)
442 PF10313 DUF2415: Uncharacteri 95.6 0.08 1.7E-06 29.0 5.4 33 207-239 1-35 (43)
443 PRK10115 protease 2; Provision 95.6 2.2 4.7E-05 40.7 37.9 197 111-326 128-343 (686)
444 KOG3616 Selective LIM binding 95.6 0.34 7.3E-06 44.7 12.2 72 66-140 13-84 (1636)
445 TIGR01063 gyrA DNA gyrase, A s 95.5 2.6 5.7E-05 40.8 27.7 250 73-327 490-769 (800)
446 KOG1916 Nuclear protein, conta 95.2 0.014 2.9E-07 54.2 2.7 140 130-279 110-264 (1283)
447 smart00036 CNH Domain found in 95.2 1.7 3.7E-05 36.6 23.3 241 121-383 13-276 (302)
448 PRK05560 DNA gyrase subunit A; 95.1 3.6 7.8E-05 40.0 28.1 264 74-355 493-793 (805)
449 TIGR03606 non_repeat_PQQ dehyd 95.0 2.2 4.8E-05 38.0 15.3 111 251-364 30-166 (454)
450 PRK10115 protease 2; Provision 95.0 3.5 7.7E-05 39.3 37.9 242 69-330 128-397 (686)
451 KOG1916 Nuclear protein, conta 95.0 0.015 3.3E-07 53.9 2.1 120 107-236 130-264 (1283)
452 PF10214 Rrn6: RNA polymerase 94.9 4 8.8E-05 39.6 26.9 171 107-281 77-277 (765)
453 PRK13684 Ycf48-like protein; P 94.8 2.3 5E-05 36.5 23.9 112 250-369 172-284 (334)
454 PF07569 Hira: TUP1-like enhan 94.7 0.25 5.5E-06 39.2 8.2 70 305-379 18-97 (219)
455 KOG1900 Nuclear pore complex, 94.6 0.68 1.5E-05 45.6 11.8 160 211-378 83-273 (1311)
456 PF11635 Med16: Mediator compl 94.5 4.9 0.00011 38.9 19.4 72 251-322 260-345 (753)
457 PF06698 DUF1192: Protein of u 94.5 0.11 2.5E-06 30.7 4.3 29 4-32 22-50 (59)
458 KOG1983 Tomosyn and related SN 94.5 1.9 4E-05 42.8 14.9 233 67-331 35-268 (993)
459 COG4590 ABC-type uncharacteriz 94.4 1.1 2.3E-05 39.0 11.4 166 204-381 218-390 (733)
460 COG3823 Glutamine cyclotransfe 94.3 1.9 4.1E-05 33.3 14.3 179 78-269 55-247 (262)
461 PF10168 Nup88: Nuclear pore c 94.3 5.1 0.00011 38.2 23.8 87 159-247 85-189 (717)
462 KOG2247 WD40 repeat-containing 94.3 0.0044 9.5E-08 53.2 -2.6 149 207-369 35-184 (615)
463 PF14781 BBS2_N: Ciliary BBSom 94.3 1.3 2.9E-05 31.5 13.0 113 213-335 5-133 (136)
464 PF14781 BBS2_N: Ciliary BBSom 94.2 1.4 3E-05 31.4 13.8 117 71-197 2-133 (136)
465 PRK13979 DNA topoisomerase IV 94.1 6.7 0.00015 38.8 30.7 160 74-237 511-689 (957)
466 TIGR03548 mutarot_permut cycli 94.0 3.4 7.4E-05 35.3 21.4 105 172-283 74-197 (323)
467 PF07569 Hira: TUP1-like enhan 93.8 0.46 9.9E-06 37.7 8.0 78 117-196 18-102 (219)
468 TIGR03547 muta_rot_YjhT mutatr 93.8 4 8.6E-05 35.3 20.4 43 181-228 168-210 (346)
469 KOG4460 Nuclear pore complex, 93.8 2.1 4.5E-05 38.0 12.2 140 222-362 55-233 (741)
470 KOG1900 Nuclear pore complex, 93.6 8.9 0.00019 38.4 18.8 164 71-239 82-274 (1311)
471 PRK14131 N-acetylneuraminic ac 93.3 5.2 0.00011 35.1 22.1 41 182-227 190-230 (376)
472 PF12657 TFIIIC_delta: Transcr 93.0 1.1 2.3E-05 34.2 8.6 32 159-190 86-122 (173)
473 COG5509 Uncharacterized small 92.9 0.28 6.2E-06 28.4 3.9 27 4-30 26-52 (65)
474 PLN02153 epithiospecifier prot 92.9 5.7 0.00012 34.3 24.2 67 171-239 86-169 (341)
475 PF02333 Phytase: Phytase; In 92.8 6 0.00013 34.3 19.7 187 172-378 69-291 (381)
476 PF07250 Glyoxal_oxid_N: Glyox 92.5 4.8 0.0001 32.5 12.9 149 185-341 50-211 (243)
477 TIGR02276 beta_rpt_yvtn 40-res 92.5 0.96 2.1E-05 24.5 5.9 40 77-117 1-41 (42)
478 PF14761 HPS3_N: Hermansky-Pud 92.3 4.4 9.5E-05 31.7 13.5 113 74-188 22-162 (215)
479 PF03022 MRJP: Major royal jel 92.3 6 0.00013 33.1 19.4 171 182-361 35-253 (287)
480 PLN02193 nitrile-specifier pro 92.2 8.9 0.00019 34.8 22.9 108 171-284 279-414 (470)
481 TIGR02276 beta_rpt_yvtn 40-res 92.2 1.1 2.3E-05 24.3 5.9 30 307-336 1-31 (42)
482 PF11635 Med16: Mediator compl 92.0 13 0.00028 36.1 20.6 197 172-368 63-345 (753)
483 PF14779 BBS1: Ciliary BBSome 91.8 2.1 4.5E-05 34.6 9.0 71 66-136 175-255 (257)
484 PLN02193 nitrile-specifier pro 91.8 9.8 0.00021 34.6 22.1 152 172-331 177-355 (470)
485 TIGR01062 parC_Gneg DNA topois 91.7 13 0.00028 35.7 20.6 160 70-237 485-654 (735)
486 KOG3616 Selective LIM binding 91.5 6 0.00013 37.1 12.4 111 110-236 15-125 (1636)
487 PF08801 Nucleoporin_N: Nup133 91.4 7.7 0.00017 34.7 13.4 31 344-378 190-220 (422)
488 TIGR03548 mutarot_permut cycli 91.4 8.3 0.00018 32.9 18.0 110 78-194 72-199 (323)
489 TIGR03547 muta_rot_YjhT mutatr 91.3 9 0.00019 33.1 21.9 24 172-195 65-99 (346)
490 PF11715 Nup160: Nucleoporin N 90.8 1.8 3.8E-05 40.2 9.1 73 218-290 157-258 (547)
491 KOG1983 Tomosyn and related SN 90.8 12 0.00026 37.5 14.7 30 111-140 37-66 (993)
492 PF12768 Rax2: Cortical protei 90.8 8.6 0.00019 31.9 12.7 98 131-237 16-123 (281)
493 PF01166 TSC22: TSC-22/dip/bun 90.6 2.1 4.5E-05 25.1 5.7 39 2-40 13-51 (59)
494 TIGR03032 conserved hypothetic 90.6 9.2 0.0002 32.0 23.1 89 257-356 209-317 (335)
495 PF10395 Utp8: Utp8 family; I 90.5 15 0.00033 34.4 15.1 165 67-236 129-304 (670)
496 PRK00736 hypothetical protein; 90.5 1.3 2.8E-05 27.5 5.3 33 4-36 20-52 (68)
497 KOG1898 Splicing factor 3b, su 90.3 20 0.00042 35.3 18.1 178 182-369 854-1044(1205)
498 COG4590 ABC-type uncharacteriz 90.1 1.7 3.7E-05 37.8 7.5 169 59-239 212-388 (733)
499 PLN02153 epithiospecifier prot 90.1 11 0.00025 32.4 23.5 61 78-140 32-110 (341)
500 smart00036 CNH Domain found in 90.1 11 0.00023 31.9 31.2 242 79-335 13-278 (302)
No 1
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-62 Score=370.64 Aligned_cols=340 Identities=51% Similarity=0.967 Sum_probs=318.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCC
Q 016458 10 ERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDG 89 (389)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg 89 (389)
++++++++|+++|++++++.|.++.+..+..........+. ..++..++|+||.+.|.++.|++|.++|++++.||
T Consensus 2 ~~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~----i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDG 77 (343)
T KOG0286|consen 2 EELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGR----IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDG 77 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhcccccee----eeeeeEEEecccccceeeeEecCCcCeEEeeccCC
Confidence 67889999999999999999999999999988887777666 67788899999999999999999999999999999
Q ss_pred cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC
Q 016458 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD 169 (389)
Q Consensus 90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (389)
.+.|||.-+...++.++.+..+|..++|+|.|+++|+|+-|+...||++.... .....+..+.+.+|.+.+.|+.|.++
T Consensus 78 klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d-~~g~~~v~r~l~gHtgylScC~f~dD 156 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD-AEGNVRVSRELAGHTGYLSCCRFLDD 156 (343)
T ss_pred eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc-ccccceeeeeecCccceeEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999643 23556678889999999999999995
Q ss_pred CCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee
Q 016458 170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 249 (389)
Q Consensus 170 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 249 (389)
..|++++.|.+..+||+++++....| .+|.+.|.+++++|.+++.+++|+.|+..++||+|.+ ...+.|.+|
T Consensus 157 --~~ilT~SGD~TCalWDie~g~~~~~f-----~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~gh 228 (343)
T KOG0286|consen 157 --NHILTGSGDMTCALWDIETGQQTQVF-----HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGH 228 (343)
T ss_pred --CceEecCCCceEEEEEcccceEEEEe-----cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeeccc
Confidence 47999999999999999999999999 8999999999999999999999999999999999998 899999999
Q ss_pred ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (389)
+..|++++|.|+|.-+++|+.|++.++||++..+.+..+.. .....+|++++||..|++|++|..|..+.+||.-.+
T Consensus 229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~---~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH---DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---CcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence 99999999999999999999999999999999998888764 344557999999999999999999999999999999
Q ss_pred eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
+....+ .+|++.|+|+..+|||.-+++|++|..++|
T Consensus 306 e~vg~L----~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 306 ERVGVL----AGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred ceEEEe----eccCCeeEEEEECCCCcEEEecchhHheee
Confidence 999999 899999999999999999999999999999
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-56 Score=348.80 Aligned_cols=299 Identities=27% Similarity=0.462 Sum_probs=271.2
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
.+|...+.||.++|.|++|+|+|..|++|+.|.++|+||+.+..+..+.++|...|.|++|+|||+.||+|+.||.|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 47778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeC----CCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD----EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
|..++.. ....+.+|...|++++|.|- ...+|++++.||.|+|||+..+.++..+ .+|..+|+|+
T Consensus 185 dpktg~~------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-----sgHT~~VTCv 253 (480)
T KOG0271|consen 185 DPKTGQQ------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-----SGHTASVTCV 253 (480)
T ss_pred cCCCCCc------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-----ccCccceEEE
Confidence 9988652 56788999999999999873 1258999999999999999999999998 8999999999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-----------CC-------------------
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-----------DG------------------- 262 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~------------------- 262 (389)
.|- ...++++|+.|++|++|+...+ ...+.+.+|...|+.++.+. .+
T Consensus 254 rwG--G~gliySgS~DrtIkvw~a~dG-~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 254 RWG--GEGLIYSGSQDRTIKVWRALDG-KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred EEc--CCceEEecCCCceEEEEEccch-hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 997 5679999999999999999886 88999999999999998872 22
Q ss_pred ------CEEEEEecCCeEEEEECCCCc-eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 263 ------NRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 263 ------~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
..|++|+.|.++.+|+-...+ ++.....+. .-|+.+.||||++++|+++-|..|++||..+|+.+.++
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq-----~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf 405 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQ-----ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF 405 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccccchhhhhchh-----hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh
Confidence 359999999999999976544 444443333 34999999999999999999999999999999999999
Q ss_pred cCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 336 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
.+|-.+|+.++|+.|.++|++|+.|.++++ |++.+.++.
T Consensus 406 ----RGHv~~VYqvawsaDsRLlVS~SkDsTLKv----w~V~tkKl~ 444 (480)
T KOG0271|consen 406 ----RGHVAAVYQVAWSADSRLLVSGSKDSTLKV----WDVRTKKLK 444 (480)
T ss_pred ----hhccceeEEEEeccCccEEEEcCCCceEEE----EEeeeeeec
Confidence 899999999999999999999999999999 999998775
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-55 Score=342.88 Aligned_cols=304 Identities=27% Similarity=0.460 Sum_probs=278.7
Q ss_pred CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee-EEEeeCCCcEEEEEECC----
Q 016458 45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAFSP---- 119 (389)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~~~~~~---- 119 (389)
.+.....|++..-.+.++.++|..-|.|++|+|||+.||+|+.||+|++||..+++++ ..+.+|...|++++|.|
T Consensus 135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~ 214 (480)
T KOG0271|consen 135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLV 214 (480)
T ss_pred CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccC
Confidence 3445568999999999999999999999999999999999999999999999988765 56889999999999976
Q ss_pred -CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458 120 -TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (389)
Q Consensus 120 -~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 198 (389)
..++|++++.||.|+|||+..+. +...+.+|+.+|+|+.|-.+| ++++|+.|++|++|+...|.....+
T Consensus 215 p~~r~las~skDg~vrIWd~~~~~-------~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~l- 284 (480)
T KOG0271|consen 215 PPCRRLASSSKDGSVRIWDTKLGT-------CVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCREL- 284 (480)
T ss_pred CCccceecccCCCCEEEEEccCce-------EEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhh-
Confidence 56899999999999999998866 788899999999999998754 8999999999999999999998888
Q ss_pred CcccCCCCCCeeEEEeeC-----------------------------------CCCcEEEEeeCCCceEEEeCCCCCcce
Q 016458 199 GEFQSGHTADVLSVSISG-----------------------------------SNSRMFVSGSCDSTARLWDTRVASRAV 243 (389)
Q Consensus 199 ~~~~~~~~~~v~~~~~~~-----------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~ 243 (389)
.+|...|+.++.+. ..+..+++|+.|.++.+|+.....+++
T Consensus 285 ----kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi 360 (480)
T KOG0271|consen 285 ----KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI 360 (480)
T ss_pred ----cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch
Confidence 78999999988771 123469999999999999998887899
Q ss_pred eEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (389)
Q Consensus 244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (389)
..+.+|..-|+.+.||||++++++++.|..|++||.++|+.+..+..+.. .|..++|+.|.++|++|+.|.++++
T Consensus 361 ~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~-----~VYqvawsaDsRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 361 TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA-----AVYQVAWSADSRLLVSGSKDSTLKV 435 (480)
T ss_pred hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-----eeEEEEeccCccEEEEcCCCceEEE
Confidence 99999999999999999999999999999999999999999998866554 4999999999999999999999999
Q ss_pred EEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458 324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR 375 (389)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~ 375 (389)
|++++.+....+ .+|...|.++.|+|||..+++|+.|..+++ |.
T Consensus 436 w~V~tkKl~~DL----pGh~DEVf~vDwspDG~rV~sggkdkv~~l----w~ 479 (480)
T KOG0271|consen 436 WDVRTKKLKQDL----PGHADEVFAVDWSPDGQRVASGGKDKVLRL----WR 479 (480)
T ss_pred EEeeeeeecccC----CCCCceEEEEEecCCCceeecCCCceEEEe----ec
Confidence 999999999888 899999999999999999999999999999 85
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6e-54 Score=339.92 Aligned_cols=285 Identities=26% Similarity=0.473 Sum_probs=268.8
Q ss_pred cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC--CcEEEEecCCCcEEEEeCCC
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~ 140 (389)
-.|-+.+|..+.|+++++.|+||+.+|.+++|+..+...+.++.+|.+.|.++.|+|. +..+++|+.||++++|++++
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 3467889999999999999999999999999999999999999999999999999996 67899999999999999987
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (389)
.. ....+.+|...|..++|+|+| ++|++++.|.+-++||++++..+... .+|...|.+++|+| ++.
T Consensus 251 e~-------~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~Q-----EGHs~~v~~iaf~~-DGS 316 (459)
T KOG0272|consen 251 ET-------PLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQ-----EGHSKGVFSIAFQP-DGS 316 (459)
T ss_pred Cc-------chhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhh-----cccccccceeEecC-CCc
Confidence 54 678899999999999999998 79999999999999999999887776 89999999999999 999
Q ss_pred EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (389)
++++|+.|..-+|||++++ .++..+.+|..+|.+++|+|+|..|++|+.|++++|||++....+..++.+... |
T Consensus 317 L~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl-----V 390 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL-----V 390 (459)
T ss_pred eeeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch-----h
Confidence 9999999999999999999 889999999999999999999999999999999999999998888877665554 9
Q ss_pred eEEEeCC-CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458 301 TSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR 375 (389)
Q Consensus 301 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~ 375 (389)
+.+.|+| .|.+|++++.|++++||...++.++..+ .+|++.|.++.+++|++++++++.|.++++ |.
T Consensus 391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL----aGHe~kV~s~Dis~d~~~i~t~s~DRT~KL----W~ 458 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL----AGHEGKVISLDISPDSQAIATSSFDRTIKL----WR 458 (459)
T ss_pred hheEecccCCeEEEEcccCcceeeecCCCcccchhh----cCCccceEEEEeccCCceEEEeccCceeee----cc
Confidence 9999998 7889999999999999999999999999 899999999999999999999999999999 95
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-47 Score=285.97 Aligned_cols=299 Identities=28% Similarity=0.406 Sum_probs=259.3
Q ss_pred CcceeeeecccccCcEEEEEEcCC-CCeEEEEecCCcEEEEeCC-----CCCeeEEEeeCCCcEEEEEECCCCcEEEEec
Q 016458 55 TDLVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNAL-----TSQKTHAIKLPCAWVMTCAFSPTGQSVACGG 128 (389)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iw~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 128 (389)
..+....+|++|++.|+.++..+. .+.+++++.|.++.+|++. .|..++.+.+|...|..+..+++|++.++++
T Consensus 3 e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 3 EQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred hhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence 345677799999999999999986 4588999999999999764 4677899999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458 129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (389)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 208 (389)
.|+++++||+.+++ ..+.+.+|...|.+++|++++ ..+++|+.|.+|++||........... ..+.+-
T Consensus 83 wD~~lrlWDl~~g~-------~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~----~~~~~W 150 (315)
T KOG0279|consen 83 WDGTLRLWDLATGE-------STRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHE----DSHREW 150 (315)
T ss_pred ccceEEEEEecCCc-------EEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEec----CCCcCc
Confidence 99999999999865 788999999999999999997 789999999999999998766555441 223788
Q ss_pred eeEEEeeCCC-CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeE
Q 016458 209 VLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 287 (389)
Q Consensus 209 v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 287 (389)
|.++.|+|.. ..+|++++.|++|++||+++. +....+.+|.+.++.+++||||.++++|+.||.+.+||++.++.+..
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence 9999999953 779999999999999999987 78888999999999999999999999999999999999999999777
Q ss_pred eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC-----CCCeeEEEECCCCCeEEeee
Q 016458 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-----EGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~ 362 (389)
+.... .|.+++|+|+...|+.+... .|+|||+.++..+..+..-..+. .....+++|++||..|++|-
T Consensus 230 l~a~~------~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 230 LEAFD------IVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred ccCCC------eEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 65433 49999999998888777554 69999999998887775322222 33457789999999999999
Q ss_pred CCCeeEEeecceecc
Q 016458 363 WDTNLKVNLGFWRVQ 377 (389)
Q Consensus 363 ~dg~i~i~~~~W~~~ 377 (389)
.|+.|++ |.+.
T Consensus 303 td~~irv----~qv~ 313 (315)
T KOG0279|consen 303 TDNVIRV----WQVA 313 (315)
T ss_pred cCCcEEE----EEee
Confidence 9999999 9875
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-48 Score=310.05 Aligned_cols=263 Identities=24% Similarity=0.376 Sum_probs=246.5
Q ss_pred ccCCCCCcccCCCcceeeeecccccCcEEEEEEcCC--CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC
Q 016458 43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSE--RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (389)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (389)
.+-.+.++.|..++.....+|.||.+.|.++.|+|. +..||||+.||++++|++.+..++..+.+|...|..++|+|+
T Consensus 193 ~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs 272 (459)
T KOG0272|consen 193 GSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS 272 (459)
T ss_pred eecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC
Confidence 334566778999999999999999999999999996 568999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (389)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 200 (389)
|++|++++.|.+-++||+.++. ......+|...|.+++|.++| .++++|+.|..-+|||++++.++..+
T Consensus 273 G~~L~TasfD~tWRlWD~~tk~-------ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L--- 341 (459)
T KOG0272|consen 273 GKFLGTASFDSTWRLWDLETKS-------ELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFL--- 341 (459)
T ss_pred Cceeeecccccchhhcccccch-------hhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEe---
Confidence 9999999999999999999865 455678999999999999998 79999999999999999999999999
Q ss_pred ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEEC
Q 016458 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI 279 (389)
Q Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 279 (389)
.+|..+|.+++|+| ++..+++|+.|++++|||++.. ..+..+.+|.+-|+.+.|+| .|.+|++++.|+++++|..
T Consensus 342 --~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 342 --AGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred --cccccceeeEeECC-CceEEeecCCCCcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 79999999999999 9999999999999999999988 67899999999999999999 8899999999999999999
Q ss_pred CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (389)
++..++..+..+... |.++.+++++.++++++.|.++++|.
T Consensus 418 ~~~~~~ksLaGHe~k-----V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RTWSPLKSLAGHEGK-----VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCcccchhhcCCccc-----eEEEEeccCCceEEEeccCceeeecc
Confidence 999999998776665 99999999999999999999999995
No 7
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-46 Score=293.41 Aligned_cols=334 Identities=25% Similarity=0.405 Sum_probs=291.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEE
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIV 83 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~ 83 (389)
++.++|+.+..++..++... . .-.+..+......|..|-|.+ .....+.+|..+|+.+-|+|+-..++
T Consensus 57 Sv~rlqKki~~Les~l~~~~-------~----el~~g~pt~~~~~~~~wipRp-~l~~~l~g~r~~vt~v~~hp~~~~v~ 124 (406)
T KOG0295|consen 57 SVDRLQKKIRELESKLDETG-------D----ELIAGDPTGSKRTPALWIPRP-NLVQKLAGHRSSVTRVIFHPSEALVV 124 (406)
T ss_pred ccchhHHHHHHHHhhhcccc-------c----ccccCCCCcCccChhhcCCCC-CchhhhhccccceeeeeeccCceEEE
Confidence 34455555555544444333 2 223334444455666676654 44557788999999999999999999
Q ss_pred EEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEE
Q 016458 84 SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC 163 (389)
Q Consensus 84 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (389)
+++.|++|++||..+++....+++|...+..++|+..|+++++++.|=.+.+||+.. ...+.+.+.+|...|.+
T Consensus 125 ~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~------~~~c~ks~~gh~h~vS~ 198 (406)
T KOG0295|consen 125 SASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT------FFRCIKSLIGHEHGVSS 198 (406)
T ss_pred EecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH------HHHHHHHhcCcccceee
Confidence 999999999999999999999999999999999999999999999999999999986 23467788899999999
Q ss_pred EEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcce
Q 016458 164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243 (389)
Q Consensus 164 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 243 (389)
+.|.|.| .++++++.|.+|+.|++.++.++..+ .+|..-|..+..+. ++.++++++.|.+|++|-+.+. .+.
T Consensus 199 V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~-----~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~-~~k 270 (406)
T KOG0295|consen 199 VFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTF-----PGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATK-QCK 270 (406)
T ss_pred EEEEecC-CeeeecccccceeEEecccceeEEec-----cCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccc-hhh
Confidence 9999998 78999999999999999999999999 78999999999998 9999999999999999999987 788
Q ss_pred eEEeeeccceEEEEEecC---------------CCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC
Q 016458 244 RTFHGHEGDVNTVKFFPD---------------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308 (389)
Q Consensus 244 ~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 308 (389)
..++.|+.+|.+++|-|. ++++.+++.|++|++||+.++.++.++..+. .+|..++|+|.
T Consensus 271 ~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd-----nwVr~~af~p~ 345 (406)
T KOG0295|consen 271 AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD-----NWVRGVAFSPG 345 (406)
T ss_pred hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc-----ceeeeeEEcCC
Confidence 889999999999999773 3589999999999999999999999886644 36999999999
Q ss_pred CCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceec
Q 016458 309 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRV 376 (389)
Q Consensus 309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~ 376 (389)
|+||+++.+|+++++||+++++....+ ..|..-|+++.|+.+..++++|+-|..+++ |.-
T Consensus 346 Gkyi~ScaDDktlrvwdl~~~~cmk~~----~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv----wEc 405 (406)
T KOG0295|consen 346 GKYILSCADDKTLRVWDLKNLQCMKTL----EAHEHFVTSLDFHKTAPYVVTGSVDQTVKV----WEC 405 (406)
T ss_pred CeEEEEEecCCcEEEEEeccceeeecc----CCCcceeEEEecCCCCceEEeccccceeee----eec
Confidence 999999999999999999999999999 799999999999999999999999999999 964
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.5e-45 Score=270.43 Aligned_cols=283 Identities=22% Similarity=0.343 Sum_probs=243.0
Q ss_pred eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccc
Q 016458 81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY 160 (389)
Q Consensus 81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
+|++++.|.+||+|...+|.+..+++...+.|+.+...|+++.||+++. ..|++||+++.. .....++.+|...
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-----p~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-----PNPVATFEGHTKN 85 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC-----CCceeEEeccCCc
Confidence 7999999999999999999999999999999999999999999999875 579999999854 2267889999999
Q ss_pred eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC
Q 016458 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240 (389)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 240 (389)
|+.+.|..+| +.+++|+.||+++|||++...+.+.+ .+..+|+++..+| +...|++|..+|.|++||+...
T Consensus 86 VtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~------~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~- 156 (311)
T KOG0315|consen 86 VTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNY------QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGEN- 156 (311)
T ss_pred eEEEEEeecC-eEEEecCCCceEEEEeccCcccchhc------cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCC-
Confidence 9999999998 89999999999999999997776665 6779999999999 8888999999999999999976
Q ss_pred cceeE-EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec-cCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458 241 RAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-QHGENEIPHVTSIAFSISGRLLFAGYSN 318 (389)
Q Consensus 241 ~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (389)
..... +.....+|.++...|||.+++.+...|..++|++........+.. .....+...+..+.+|||+++|++++.|
T Consensus 157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence 33333 334456899999999999999999999999999977543332221 1223445569999999999999999999
Q ss_pred CcEEEEEcccc-eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC-ccc
Q 016458 319 GDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP-WGV 386 (389)
Q Consensus 319 g~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~-~~~ 386 (389)
.+++||+.++. +....+ .+|..-+...+||.||+||+||+.|+.+++ |++..|+... |.+
T Consensus 237 ktv~iwn~~~~~kle~~l----~gh~rWvWdc~FS~dg~YlvTassd~~~rl----W~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLELVL----TGHQRWVWDCAFSADGEYLVTASSDHTARL----WDLSAGKEVRQYQG 298 (311)
T ss_pred ceEEEEecCCceeeEEEe----ecCCceEEeeeeccCccEEEecCCCCceee----cccccCceeeecCC
Confidence 99999999887 444555 789999999999999999999999999999 9999997543 443
No 9
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.1e-45 Score=275.82 Aligned_cols=292 Identities=21% Similarity=0.346 Sum_probs=259.7
Q ss_pred eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeC-CCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA-LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
.+...+.||.+.|+.+.|+|+|.+||+|+.|..|.+|+. ..-+....+++|.+.|+.+.|.++++.+++++.|.+++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 344568899999999999999999999999999999995 4456677788999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
|.++++ .....++|...|+.+.-+.-|..++.+++.||++++||+++...+..+ ...-.++++.|..
T Consensus 118 D~~tG~-------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~------~~kyqltAv~f~d 184 (338)
T KOG0265|consen 118 DAETGK-------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF------ENKYQLTAVGFKD 184 (338)
T ss_pred ecccce-------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc------ccceeEEEEEecc
Confidence 999977 678889999999999977778888999999999999999998888876 4566799999997
Q ss_pred CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce----eeEeeccC
Q 016458 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ----LQVYYQQH 292 (389)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~ 292 (389)
....+.+|+-|+.|++||++.. .....+.+|..+|+.+..+|+|.++.+-+.|.++++||++...+ +..+.. +
T Consensus 185 -~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g-~ 261 (338)
T KOG0265|consen 185 -TSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG-H 261 (338)
T ss_pred -cccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec-c
Confidence 7788899999999999999987 88999999999999999999999999999999999999986432 333322 2
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
..+-......++|+|+++.+.+|+.|..+++||......+..+ .+|.+.|.+++|+|...+|.+++.|.+|.+
T Consensus 262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl----pGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL----PGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc----CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 2223334677899999999999999999999999998999998 899999999999999999999999999987
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.5e-46 Score=295.56 Aligned_cols=285 Identities=29% Similarity=0.480 Sum_probs=255.7
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK 144 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 144 (389)
.-+-+|..+.|.|+|+.|++|+..|.+.+|+...-.....++.|..+|+++.|++++.++++|+.+|.|++|+.....
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-- 171 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-- 171 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--
Confidence 344589999999999999999999999999986666666678899999999999999999999999999999987533
Q ss_pred CCCCcceeeeccc-ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE
Q 016458 145 DGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223 (389)
Q Consensus 145 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (389)
.+.+..| ...|.+++|+|.. ..|++++.||+|+|||....+....+ .+|.-.|.+++|+| ...+++
T Consensus 172 ------Vk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL-----~GHgwdVksvdWHP-~kgLia 238 (464)
T KOG0284|consen 172 ------VKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVL-----RGHGWDVKSVDWHP-TKGLIA 238 (464)
T ss_pred ------hHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhhee-----ccCCCCcceeccCC-ccceeE
Confidence 3444444 5899999999964 78999999999999999998888888 79999999999999 788999
Q ss_pred EeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEE
Q 016458 224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303 (389)
Q Consensus 224 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 303 (389)
+++.|..|++||.+++ .++.++..|...|..+.|+|++++|++++.|..+++||+++.+.+..+..+... ++++
T Consensus 239 sgskDnlVKlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-----v~~~ 312 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-----VTSL 312 (464)
T ss_pred EccCCceeEeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-----heee
Confidence 9999999999999998 899999999999999999999999999999999999999988888888766554 9999
Q ss_pred EeCCCC-CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 304 AFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 304 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
.|+|-. .+|.+|+.||.|..|.+...+++..+. .+|...|.+++|+|-|.+|++|+.|.++++ |.-.
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~---~AHd~~iwsl~~hPlGhil~tgsnd~t~rf----w~r~ 380 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP---PAHDGEIWSLAYHPLGHILATGSNDRTVRF----WTRN 380 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccccCCC---cccccceeeeeccccceeEeecCCCcceee----eccC
Confidence 999954 588889999999999998667766665 799999999999999999999999999999 9754
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-44 Score=279.04 Aligned_cols=298 Identities=26% Similarity=0.374 Sum_probs=266.5
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (389)
+.+..+.+.||.+-|.|+++.|.+.+|++|+.|++++|||+.+++...++.+|...|..+++++...|+++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
||++.++ +++.+.+|-+.|.|++.+|.- ..|++|+.|.++++||+++...+..+ .+|..+|.++.+.
T Consensus 220 wDLe~nk-------vIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l-----~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 220 WDLEYNK-------VIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVL-----SGHTNPVASVMCQ 286 (460)
T ss_pred Eechhhh-------hHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEe-----cCCCCcceeEEee
Confidence 9999866 788899999999999999986 68999999999999999999999999 8999999999999
Q ss_pred CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 295 (389)
| -+..+++|+.|++|++||++.+ +....+..|...+.+++.+|....+++++.| .|+.|++..+..+..+..+..
T Consensus 287 ~-~dpqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~-- 361 (460)
T KOG0285|consen 287 P-TDPQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA-- 361 (460)
T ss_pred c-CCCceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--
Confidence 8 5567899999999999999998 7788888899999999999999999999887 699999999988877554443
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCC----CCCCCeeEEEECCCCCeEEeeeCCCeeEEee
Q 016458 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN----SHEGRITCLGLSADGSALCTGSWDTNLKVNL 371 (389)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~ 371 (389)
-|++++.+.|| ++++|+++|.+.+||.+++........... ..+..|.+.+|+..|..|++|..|.+|++
T Consensus 362 ---iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~-- 435 (460)
T KOG0285|consen 362 ---IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKM-- 435 (460)
T ss_pred ---eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEE--
Confidence 38899988776 788899999999999998876665532211 23457999999999999999999999999
Q ss_pred cceecccC
Q 016458 372 GFWRVQEG 379 (389)
Q Consensus 372 ~~W~~~~~ 379 (389)
|.-.+.
T Consensus 436 --~keDe~ 441 (460)
T KOG0285|consen 436 --YKEDEH 441 (460)
T ss_pred --Eecccc
Confidence 886644
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.4e-43 Score=261.46 Aligned_cols=294 Identities=21% Similarity=0.364 Sum_probs=246.0
Q ss_pred ceeeeecccccCcEEEEEEcCC-CCeEEEEecCCcEEEEeCCCCCe---eEEE-eeCCCcEEEEEECCCCcEEEEecCCC
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQK---THAI-KLPCAWVMTCAFSPTGQSVACGGLDS 131 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg 131 (389)
+...+.+++|+++|..++|+|- |..||+++.|+.|++|+...+.. ...+ .+|...|+.++|+|.|++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999998 88999999999999999875332 2222 35788999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC---eeEEEecCcccCCCCCC
Q 016458 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGHTAD 208 (389)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~ 208 (389)
++.||.-.. ..+.+...+.+|...|.|++|+++| ++|++++.|..|-||.+..+ .+...+ ..|...
T Consensus 84 t~~Iw~k~~-----~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL-----~~HtqD 152 (312)
T KOG0645|consen 84 TVVIWKKED-----GEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVL-----QEHTQD 152 (312)
T ss_pred eEEEeecCC-----CceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeee-----cccccc
Confidence 999998765 4566899999999999999999998 89999999999999999854 455666 789999
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCC--CCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRV--ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (389)
|..+.|+| ...+|++++.|.+|++|+-.. .-.++.++.+|.+.|.+++|+|.|..|++++.|++++||.+.+.-
T Consensus 153 VK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--- 228 (312)
T KOG0645|consen 153 VKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--- 228 (312)
T ss_pred ccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---
Confidence 99999999 888999999999999998662 236788999999999999999999999999999999999876321
Q ss_pred EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce--EE-EeecCcCCCCCCCeeEEEECCC-CCeEEeee
Q 016458 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--VV-LNLGSLQNSHEGRITCLGLSAD-GSALCTGS 362 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~ 362 (389)
. ..+...+..+.|. ...|++++.|+.|++|.-.... +. ..+......|...|++++|.|. ..+|++|+
T Consensus 229 --~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~ 300 (312)
T KOG0645|consen 229 --S----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG 300 (312)
T ss_pred --c----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC
Confidence 1 1222348889997 4589999999999999865421 11 1111223679999999999994 77899999
Q ss_pred CCCeeEEeecceecc
Q 016458 363 WDTNLKVNLGFWRVQ 377 (389)
Q Consensus 363 ~dg~i~i~~~~W~~~ 377 (389)
.||.+++ |.+.
T Consensus 301 DDG~v~~----W~l~ 311 (312)
T KOG0645|consen 301 DDGIVNF----WELE 311 (312)
T ss_pred CCceEEE----EEec
Confidence 9999999 9875
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-43 Score=282.98 Aligned_cols=289 Identities=25% Similarity=0.438 Sum_probs=254.9
Q ss_pred cccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCC----CeeEEEe----------eCCCcEEEEEECCCCcEEEEecC
Q 016458 65 GHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTS----QKTHAIK----------LPCAWVMTCAFSPTGQSVACGGL 129 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~----~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~ 129 (389)
.|..+|.+.+|+|-.. .+++++.|-+.++|++... .....++ .....|++++|+.+|..||+|..
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 4999999999999665 8999999999999998641 1111111 12356999999999999999999
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 209 (389)
||.+++|+.... ...++..|+++|.++.|+..| +++++++.|+++.+||..++.....+ ..|..+-
T Consensus 256 ~G~~riw~~~G~--------l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f-----~~~s~~~ 321 (524)
T KOG0273|consen 256 DGEARIWNKDGN--------LISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQF-----EFHSAPA 321 (524)
T ss_pred CcEEEEEecCch--------hhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEee-----eeccCCc
Confidence 999999998763 467888999999999999998 79999999999999999999999988 6677777
Q ss_pred eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (389)
..+.|- +..-|++++.|+.|+++.+... .++.++.+|.++|.++.|+|.+.+|++++.|++++||..........+.
T Consensus 322 lDVdW~--~~~~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 322 LDVDWQ--SNDEFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred cceEEe--cCceEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence 788887 5567899999999999999876 8899999999999999999999999999999999999988877777766
Q ss_pred ccCCCCCCCCeeEEEeCCCC---------CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458 290 QQHGENEIPHVTSIAFSISG---------RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (389)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 360 (389)
.+... |..+.|+|+| ..+++++.|+.|++||+..+.++..+ ..|..+|.+++|+|+|+++|+
T Consensus 399 ~Hske-----i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f----~kH~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 399 AHSKE-----IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL----MKHQEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred hhccc-----eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee----ccCCCceEEEEecCCCcEEEe
Confidence 55543 8999999864 47899999999999999999999999 799999999999999999999
Q ss_pred eeCCCeeEEeecceecccCcccC
Q 016458 361 GSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 361 ~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
|+.||.|.| |+.+++++..
T Consensus 470 Gs~dg~V~i----ws~~~~~l~~ 488 (524)
T KOG0273|consen 470 GSLDGCVHI----WSTKTGKLVK 488 (524)
T ss_pred cCCCCeeEe----ccccchheeE
Confidence 999999999 9999999865
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.1e-43 Score=280.27 Aligned_cols=278 Identities=23% Similarity=0.389 Sum_probs=254.8
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
..|++++|+.+|..||+|+.||.+++|+ .+|..+.++..|.++|.++.|+..|.+|++++.|+++.+||..++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~----- 309 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT----- 309 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-----
Confidence 4699999999999999999999999999 5688889999999999999999999999999999999999997765
Q ss_pred CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (389)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (389)
..+.+.-|..+-.++.|-.+. .|++++.|+.|+++.+....+..++ .+|.++|.++.|+| .+.+|++++.
T Consensus 310 --~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~-----~GH~g~V~alk~n~-tg~LLaS~Sd 379 (524)
T KOG0273|consen 310 --VKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTF-----IGHHGEVNALKWNP-TGSLLASCSD 379 (524)
T ss_pred --EEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceee-----ecccCceEEEEECC-CCceEEEecC
Confidence 677788888887889998754 6999999999999999999999998 78999999999999 8999999999
Q ss_pred CCceEEEeCCCCCcceeEEeeeccceEEEEEecCC---------CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCC
Q 016458 228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG---------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (389)
Q Consensus 228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 298 (389)
|++++||..... .....+.+|...|..+.|+|.| ..+++++.|++|++||+..+.++..+..+..
T Consensus 380 D~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~----- 453 (524)
T KOG0273|consen 380 DGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE----- 453 (524)
T ss_pred CCeeEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-----
Confidence 999999998877 7888999999999999999953 5799999999999999999999999866554
Q ss_pred CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceec
Q 016458 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRV 376 (389)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~ 376 (389)
+|.+++|+|+|+|+|+|+.||.|.+|+.++++..+.. .-.+.|..++|+.+|.+|..+-.||.+++ -|+
T Consensus 454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~-----~~~~~Ifel~Wn~~G~kl~~~~sd~~vcv----ldl 522 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY-----QGTGGIFELCWNAAGDKLGACASDGSVCV----LDL 522 (524)
T ss_pred ceEEEEecCCCcEEEecCCCCeeEeccccchheeEee-----cCCCeEEEEEEcCCCCEEEEEecCCCceE----EEe
Confidence 5999999999999999999999999999999999987 34567999999999999999999999998 665
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-41 Score=285.29 Aligned_cols=288 Identities=35% Similarity=0.582 Sum_probs=257.0
Q ss_pred eeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (389)
.++|++|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|+|+++.+++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 35788999999999999999999999999999999999998888888898999999999999999999999999999998
Q ss_pred CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
.+. ....+..|...+.++.|++++ .++++++.+|.|.+||+.+++....+ ..|...+.++.++| ++
T Consensus 82 ~~~-------~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~ 147 (289)
T cd00200 82 TGE-------CVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTL-----RGHTDWVNSVAFSP-DG 147 (289)
T ss_pred ccc-------ceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEe-----ccCCCcEEEEEEcC-cC
Confidence 743 455667888899999999985 67888878999999999988888877 57888999999999 67
Q ss_pred cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
.++++++.++.|++||++.. +....+..|...+.+++|+|+++.+++++.||.|++||++.++....+..+. ..
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-----~~ 221 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE-----NG 221 (289)
T ss_pred CEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC-----Cc
Confidence 88888888999999999876 6777888888899999999999999999999999999999877776664332 25
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR 375 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~ 375 (389)
+.+++|+|++.++++++.+|.|++||+.+++....+ ..|...|.+++|++++.+|++++.||.+++ |+
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i----w~ 289 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL----SGHTNSVTSLAWSPDGKRLASGSADGTIRI----WD 289 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc----cccCCcEEEEEECCCCCEEEEecCCCeEEe----cC
Confidence 999999999889988888999999999998888888 688889999999999999999999999999 96
No 16
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-44 Score=291.61 Aligned_cols=297 Identities=21% Similarity=0.400 Sum_probs=256.6
Q ss_pred ceeeeecccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCC-CCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEE
Q 016458 57 LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS 134 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 134 (389)
-+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+++|..+++++.|+.++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 356778999999999999999 888999999999999999876 889999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEe
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 214 (389)
+||+++++ +...+. ....++|+.|.|++.+.|++|+.|+.|+.||+++++.+..+ ..|-+.|..+.|
T Consensus 284 lwDtETG~-------~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-----d~hLg~i~~i~F 350 (503)
T KOG0282|consen 284 LWDTETGQ-------VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-----DRHLGAILDITF 350 (503)
T ss_pred eeccccce-------EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-----HhhhhheeeeEE
Confidence 99999976 444433 34568999999999899999999999999999999998888 788999999999
Q ss_pred eCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC
Q 016458 215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (389)
Q Consensus 215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 294 (389)
-+ ++..+++++.|++++||+.+.+-........+.....++..+|++++++.-+.|+.|.+|.+...-.........+.
T Consensus 351 ~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh 429 (503)
T KOG0282|consen 351 VD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH 429 (503)
T ss_pred cc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce
Confidence 99 88999999999999999999773332333334456788999999999999999999999997654333322222233
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEeeeCCCeeEEeecc
Q 016458 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVNLGF 373 (389)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~ 373 (389)
...+.-..+.|||||.+|++|+.||.+.+||.++.+.+..+ ..|++++..+.|+| ....+|+++.||.|++
T Consensus 430 ~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l----kah~~~ci~v~wHP~e~Skvat~~w~G~Iki---- 501 (503)
T KOG0282|consen 430 SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL----KAHDQPCIGVDWHPVEPSKVATCGWDGLIKI---- 501 (503)
T ss_pred eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc----ccCCcceEEEEecCCCcceeEecccCceeEe----
Confidence 33345678999999999999999999999999999999999 89999999999999 4567999999999999
Q ss_pred ee
Q 016458 374 WR 375 (389)
Q Consensus 374 W~ 375 (389)
|+
T Consensus 502 wd 503 (503)
T KOG0282|consen 502 WD 503 (503)
T ss_pred cC
Confidence 96
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-41 Score=277.33 Aligned_cols=323 Identities=20% Similarity=0.328 Sum_probs=264.2
Q ss_pred ccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe---eCCCcEEEEEE
Q 016458 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK---LPCAWVMTCAF 117 (389)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~---~~~~~v~~~~~ 117 (389)
...+.+-....+.-++++...+++.|..-|.|+.|+|||.++|+++.||+|.+||-.+++.+..+. .|.+.|.+++|
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW 243 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW 243 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE
Confidence 344445555667777888899999999999999999999999999999999999999999999998 89999999999
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCCC------------------------------------CCCCCcceeeecccccce
Q 016458 118 SPTGQSVACGGLDSVCSIFNLNSPTD------------------------------------KDGNLPVSRMLSGHKGYV 161 (389)
Q Consensus 118 ~~~~~~l~~~~~dg~i~vw~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~v 161 (389)
+||++.+++++.|.+++|||+.+... ..........+.+|...|
T Consensus 244 sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~I 323 (603)
T KOG0318|consen 244 SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSI 323 (603)
T ss_pred CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccce
Confidence 99999999999999999999987541 011223556788999999
Q ss_pred EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-
Q 016458 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS- 240 (389)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~- 240 (389)
+++..++++ .+|++|+.||.|.-|++.++..-.... ..|...|.+++.+. ...+++.+.|.++++.++....
T Consensus 324 TaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g----~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 324 TALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAG----KGHTNQIKGMAASE--SGELFTIGWDDTLRVISLKDNGY 396 (603)
T ss_pred eEEEEcCCC-CEEEeeccCceEEEEecCCcccccccc----ccccceEEEEeecC--CCcEEEEecCCeEEEEecccCcc
Confidence 999999998 899999999999999999987766543 57889999999874 3457788889999999764221
Q ss_pred ----------cc-------------------eeEEeee--------ccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 241 ----------RA-------------------VRTFHGH--------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 241 ----------~~-------------------~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
++ +..++.+ .-...+++++|++..+++|+.||.|++|.+....
T Consensus 397 t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~ 476 (603)
T KOG0318|consen 397 TKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE 476 (603)
T ss_pred cccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCc
Confidence 01 0111111 1235689999999999999999999999998766
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
....... ..+..+|++++||||+.|||++...+.+.+||+.+.+...... ..|...|.+++|+|+..++|||+-
T Consensus 477 l~ee~~~---~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w---~FHtakI~~~aWsP~n~~vATGSl 550 (603)
T KOG0318|consen 477 LKEEAKL---LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW---AFHTAKINCVAWSPNNKLVATGSL 550 (603)
T ss_pred ccceeee---ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee---eeeeeeEEEEEeCCCceEEEeccc
Confidence 4333222 2334469999999999999999999999999999887743322 569999999999999999999999
Q ss_pred CCeeEEeecceecccCc
Q 016458 364 DTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 364 dg~i~i~~~~W~~~~~~ 380 (389)
|-.|.| |+++...
T Consensus 551 Dt~Vii----ysv~kP~ 563 (603)
T KOG0318|consen 551 DTNVII----YSVKKPA 563 (603)
T ss_pred cceEEE----EEccChh
Confidence 999999 9998653
No 18
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-42 Score=270.78 Aligned_cols=289 Identities=19% Similarity=0.299 Sum_probs=248.3
Q ss_pred eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~ 138 (389)
...+|.+|+++|.+++.+|+.++++||+.|..-.+|++.++.....+.+|...|+++.|+.+|.+||+|+.+|.|.||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (389)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (389)
.++. ....+...-..+.-+.|+|.+ ..|++|+.||.+.+|.+.++.....+ .+|..++++=.|.| +
T Consensus 136 stg~-------~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~-----~Gh~~~ct~G~f~p-d 201 (399)
T KOG0296|consen 136 STGG-------EQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVM-----SGHNSPCTCGEFIP-D 201 (399)
T ss_pred ccCc-------eEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEe-----cCCCCCcccccccC-C
Confidence 9865 344444556778889999986 78999999999999999998777777 78999999999999 7
Q ss_pred CcEEEEeeCCCceEEEeCCCCCcceeEEee--------------------------------------------------
Q 016458 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHG-------------------------------------------------- 248 (389)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------------------------------- 248 (389)
++.++++..||+|++||+.++ .++..+..
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~ 280 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP 280 (399)
T ss_pred CceEEEEecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence 999999999999999999887 44433320
Q ss_pred -eccceEEEEE---ecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEE
Q 016458 249 -HEGDVNTVKF---FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (389)
Q Consensus 249 -~~~~i~~~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (389)
+...+.++.+ +..-.+.++|+.||+|.|||+...+....+.... +|+.+.|-+ ..+|++++.+|.|+.|
T Consensus 281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~------~V~~l~w~~-t~~l~t~c~~g~v~~w 353 (399)
T KOG0296|consen 281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED------GVTKLKWLN-TDYLLTACANGKVRQW 353 (399)
T ss_pred cchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC------ceEEEEEcC-cchheeeccCceEEee
Confidence 1111222333 2234678899999999999998876655543322 499999988 7899999999999999
Q ss_pred EcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 325 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 325 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
|.++|+....+ .+|...|.+++++|+.++++|+|.|++.+| +++.
T Consensus 354 DaRtG~l~~~y----~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V----F~v~ 398 (399)
T KOG0296|consen 354 DARTGQLKFTY----TGHQMGILDFALSPQKRLVVTVSDDNTALV----FEVP 398 (399)
T ss_pred eccccceEEEE----ecCchheeEEEEcCCCcEEEEecCCCeEEE----EecC
Confidence 99999999999 899999999999999999999999999999 7764
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-42 Score=258.65 Aligned_cols=271 Identities=24% Similarity=0.388 Sum_probs=228.5
Q ss_pred cccCCCCCcccCC-----CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEE
Q 016458 42 SRSQGRAPVSFGP-----TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116 (389)
Q Consensus 42 ~~~~~~~~~~~~~-----~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~ 116 (389)
+.+++.....|+. .-....+.|.||...|..++.++||++.++++.|+++++||+.+++..+.+.+|...|.+++
T Consensus 33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva 112 (315)
T KOG0279|consen 33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVA 112 (315)
T ss_pred EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEE
Confidence 4444555555543 34567899999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEE
Q 016458 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTS 195 (389)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 195 (389)
|+++.+.+++|+.|.+|++|+.-... .....-..+.+.|.|+.|+|+. +.++++++.|++|++||+++.+...
T Consensus 113 ~s~dn~qivSGSrDkTiklwnt~g~c------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 113 FSTDNRQIVSGSRDKTIKLWNTLGVC------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred ecCCCceeecCCCcceeeeeeecccE------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 99999999999999999999987632 1122222337899999999984 4789999999999999999999888
Q ss_pred EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEE
Q 016458 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (389)
Q Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (389)
.+ .+|...++.++++| ++.++++|+.||.+.+||++.. +.+..+ .|...|.+++|+|+.-.|+.+. +..|+
T Consensus 187 ~~-----~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~-k~lysl-~a~~~v~sl~fspnrywL~~at-~~sIk 257 (315)
T KOG0279|consen 187 TF-----IGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEG-KNLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIK 257 (315)
T ss_pred cc-----ccccccEEEEEECC-CCCEEecCCCCceEEEEEccCC-ceeEec-cCCCeEeeEEecCCceeEeecc-CCceE
Confidence 88 79999999999999 9999999999999999999987 555555 4788999999999876666554 45699
Q ss_pred EEECCCCceeeEeeccCCC----CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 276 LFDIRTGHQLQVYYQQHGE----NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
|||+.++..+..+...... .......+++|+++|..|++|..|+.|++|.+.
T Consensus 258 Iwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 258 IWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9999998887776543322 123347889999999999999999999999864
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.3e-43 Score=298.37 Aligned_cols=283 Identities=30% Similarity=0.538 Sum_probs=244.3
Q ss_pred eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (389)
.|.-++.--...++|..|++|+.+||.|..|..|++|.+... .+..++... + ...+=+.+.|-.+.+.|
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~-------~---l~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDAS-------D---LSNIDTESADVDVDMLD 437 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchh-------h---hccccccccchhhhhcc
Confidence 455566555567999999999999999999999999998754 222332211 1 11122233343455555
Q ss_pred CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 217 (389)
..... ....+.+|.++|..+.|+|+. ++|++++.|+++++|.+.+..++..+ .+|..+|..+.|+|
T Consensus 438 ~~~~~-------~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y-----~GH~~PVwdV~F~P- 503 (707)
T KOG0263|consen 438 DDSSG-------TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIY-----KGHLAPVWDVQFAP- 503 (707)
T ss_pred ccCCc-------eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEe-----cCCCcceeeEEecC-
Confidence 55433 566789999999999999997 89999999999999999999999999 89999999999999
Q ss_pred CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (389)
.+.+|++++.|++-++|..... .+++.+.+|.+.|.|+.|+|+..|+++|+.|.+|++||+.+|..++.+..+..
T Consensus 504 ~GyYFatas~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~---- 578 (707)
T KOG0263|consen 504 RGYYFATASHDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG---- 578 (707)
T ss_pred CceEEEecCCCceeeeeecccC-CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC----
Confidence 8999999999999999999887 89999999999999999999999999999999999999999999999966444
Q ss_pred CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
+|++++|||+|++|++|+.||.|.+||+.+++.+..+ .+|.+.|.++.|+.||..||+||.|..|++ ||+.
T Consensus 579 -~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l----~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l----WD~~ 649 (707)
T KOG0263|consen 579 -PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL----KGHTGTIYSLSFSRDGNVLASGGADNSVRL----WDLT 649 (707)
T ss_pred -ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh----hcccCceeEEEEecCCCEEEecCCCCeEEE----EEch
Confidence 5999999999999999999999999999999999999 899999999999999999999999999999 9987
Q ss_pred cC
Q 016458 378 EG 379 (389)
Q Consensus 378 ~~ 379 (389)
.-
T Consensus 650 ~~ 651 (707)
T KOG0263|consen 650 KV 651 (707)
T ss_pred hh
Confidence 53
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=251.64 Aligned_cols=288 Identities=19% Similarity=0.287 Sum_probs=249.5
Q ss_pred ccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEEC
Q 016458 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFS 118 (389)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~ 118 (389)
.+.+.+-.+..|......|.++++...+.|+.+...|+++.||+|+.- .||+||+.++. ++.++.+|...|+++.|.
T Consensus 14 vsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~ 92 (311)
T KOG0315|consen 14 VSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ 92 (311)
T ss_pred EeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEe
Confidence 345566777889999999999999889999999999999999999875 79999998765 588899999999999999
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (389)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 198 (389)
.+|+.+++|++||+++|||++... ......|..+|+++..+|+. ..|++|..+|.|++||+....+...+.
T Consensus 93 ~dgrWMyTgseDgt~kIWdlR~~~--------~qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 93 CDGRWMYTGSEDGTVKIWDLRSLS--------CQRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred ecCeEEEecCCCceEEEEeccCcc--------cchhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccC
Confidence 999999999999999999998733 34455678999999999985 689999999999999999987776664
Q ss_pred CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC-----CcceeEEeeeccceEEEEEecCCCEEEEEecCCe
Q 016458 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-----SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273 (389)
Q Consensus 199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 273 (389)
......|.++.+.| ++.+++.+...|..++|++-.. -.++..++.|++.+..+.+||++++|++++.|.+
T Consensus 164 ----Pe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 164 ----PEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred ----CCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence 34557899999999 8999999999999999998653 2466788999999999999999999999999999
Q ss_pred EEEEECCCC-ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEEC
Q 016458 274 CRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (389)
Q Consensus 274 i~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 352 (389)
++||+..+. +....+ ..+..++..++||.||+||++|+.|+.+++||+..++.+... .+|.....|++..
T Consensus 239 v~iwn~~~~~kle~~l-----~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy----~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 239 VKIWNTDDFFKLELVL-----TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY----QGHHKAAVCVALN 309 (311)
T ss_pred EEEEecCCceeeEEEe-----ecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec----CCcccccEEEEee
Confidence 999999887 222222 223347999999999999999999999999999999999998 7888888887754
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-41 Score=287.18 Aligned_cols=309 Identities=23% Similarity=0.355 Sum_probs=267.3
Q ss_pred ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecC-CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC
Q 016458 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD-GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL 129 (389)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~d-g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 129 (389)
.+..+...+++.|.--..+|..++|+..|++||.|+.. |.+.||+..+..-+...++|...+++++++|||+++++|+.
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE 370 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence 44557778888888888899999999999999998765 89999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 209 (389)
||.|+|||..++- +..++..|+..|+.+.|+..+ +.+++++-||+|+.||+......+++. ...+...
T Consensus 371 DgKVKvWn~~Sgf-------C~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft----~P~p~Qf 438 (893)
T KOG0291|consen 371 DGKVKVWNTQSGF-------CFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFT----SPEPIQF 438 (893)
T ss_pred CCcEEEEeccCce-------EEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeec----CCCceee
Confidence 9999999998866 889999999999999999997 789999999999999999999888884 3344557
Q ss_pred eEEEeeCCCCcEEEEeeCCC-ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc-eeeE
Q 016458 210 LSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQV 287 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~ 287 (389)
.|++..| .+.++.+|+.|. .|.+|++.++ +.+..+.+|++||.+++|+|++..|++++.|.+|++||+-... ....
T Consensus 439 scvavD~-sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt 516 (893)
T KOG0291|consen 439 SCVAVDP-SGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET 516 (893)
T ss_pred eEEEEcC-CCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee
Confidence 7888888 778888887765 6999999998 8999999999999999999999999999999999999986653 3333
Q ss_pred eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC----------------CCCCCCeeEEEE
Q 016458 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ----------------NSHEGRITCLGL 351 (389)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------~~~~~~v~~~~~ 351 (389)
+...+ .+..++|+|+|+-|++++.||.|.+||...+.....+.... .......+.+++
T Consensus 517 l~i~s------dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~y 590 (893)
T KOG0291|consen 517 LEIRS------DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICY 590 (893)
T ss_pred Eeecc------ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEE
Confidence 33322 28999999999999999999999999988776664442110 123367899999
Q ss_pred CCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 352 SADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 352 ~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
++||.++++||....|++ +++.++-+..
T Consensus 591 SaDG~~IlAgG~sn~iCi----Y~v~~~vllk 618 (893)
T KOG0291|consen 591 SADGKCILAGGESNSICI----YDVPEGVLLK 618 (893)
T ss_pred cCCCCEEEecCCcccEEE----EECchhheee
Confidence 999999999999999999 9999986643
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-41 Score=256.31 Aligned_cols=303 Identities=19% Similarity=0.360 Sum_probs=257.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhccc--------------------------ccccccccCCCCCcc
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKR-----QQLLDV--------------------------DVAGYSRSQGRAPVS 51 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--------------------------~~~~~~~~~~~~~~~ 51 (389)
+++|+|.++.++++.++++.+.++.... ..+... .....+.++++....
T Consensus 2 ~~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIv 81 (343)
T KOG0286|consen 2 EELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIV 81 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccccceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEE
Confidence 5788888888888888888776654421 111000 022334556666777
Q ss_pred cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC------CeeEEEeeCCCcEEEEEECCCCcEEE
Q 016458 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMTCAFSPTGQSVA 125 (389)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~ 125 (389)
|+.......+.+.--..-|..++|+|.|+++|+|+-|+...||++.+. .....+.+|.+.+.|+.|.+ ...|+
T Consensus 82 WDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~il 160 (343)
T KOG0286|consen 82 WDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHIL 160 (343)
T ss_pred EEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceE
Confidence 888887777777777888999999999999999999999999999865 34566889999999999987 56689
Q ss_pred EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (389)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 205 (389)
+++.|.++.+||+++++ ....+.+|.+.|.++.++|...+.+++|+.|+..++||++.+.+.+.| .+|
T Consensus 161 T~SGD~TCalWDie~g~-------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF-----~gh 228 (343)
T KOG0286|consen 161 TGSGDMTCALWDIETGQ-------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF-----EGH 228 (343)
T ss_pred ecCCCceEEEEEcccce-------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee-----ccc
Confidence 99999999999999877 788899999999999999955589999999999999999999999999 899
Q ss_pred CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--eccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
...|+++.|.| ++.-|++|+.|++.++||+|.. +.+..+.. ...+|++++||..|++|++|..|..+.+||.-.++
T Consensus 229 esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 229 ESDINSVRFFP-SGDAFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ccccceEEEcc-CCCeeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence 99999999999 8999999999999999999987 55555542 34579999999999999999999999999999998
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (389)
....+..+.. .|+++..+|||..+++|+.|..++||.
T Consensus 307 ~vg~L~GHeN-----RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 307 RVGVLAGHEN-----RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEeeccCC-----eeEEEEECCCCcEEEecchhHheeecC
Confidence 8888876555 499999999999999999999999994
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.9e-41 Score=294.39 Aligned_cols=295 Identities=27% Similarity=0.510 Sum_probs=262.1
Q ss_pred eeecccc-cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 60 CRTLQGH-AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 60 ~~~l~~h-~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
...+.+| ...|.++.|+++|+.+++++.|+.+++|+..+.+ ....+..|...|..++|+|+++++++++.|++|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 5566555 7799999999999999999999999999997777 677778899999999999999999999999999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
|+... ....+.+.+|...|++++|+|++ +++++|+.|++|++||++++++...+ ..|...|.+++|++
T Consensus 231 d~~~~------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l-----~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 231 DLKDD------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKL-----KGHSDGISGLAFSP 298 (456)
T ss_pred eccCC------CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEee-----eccCCceEEEEECC
Confidence 99442 22678899999999999999998 89999999999999999999999999 89999999999999
Q ss_pred CCCcEEEEeeCCCceEEEeCCCCCc-ceeEEeeeccc--eEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458 217 SNSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGD--VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (389)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (389)
++++|++++.|+.|++||+.++.. +...+..+... ++++.|+|++.++++++.|+.+++||+..+.....+..+..
T Consensus 299 -d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 299 -DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred -CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 889999999999999999998732 35566666555 99999999999999999999999999999988888776554
Q ss_pred CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC-CCCeeEEEECCCCCeEEeee--CCCeeEEe
Q 016458 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-EGRITCLGLSADGSALCTGS--WDTNLKVN 370 (389)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~dg~i~i~ 370 (389)
. ...+.+..+++.+.++++|+.|+.|++||+.++..+..+ .+| ...+..+.+++...++++++ .|+.+++
T Consensus 378 ~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l----~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~- 450 (456)
T KOG0266|consen 378 L--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL----EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRL- 450 (456)
T ss_pred c--ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh----cCCCCCceeccccCCCcCeeeecCcCCCceEEE-
Confidence 3 123556666889999999999999999999998888888 788 88999999999999999998 7899999
Q ss_pred ecceecc
Q 016458 371 LGFWRVQ 377 (389)
Q Consensus 371 ~~~W~~~ 377 (389)
|..+
T Consensus 451 ---w~~~ 454 (456)
T KOG0266|consen 451 ---WKYD 454 (456)
T ss_pred ---ecCC
Confidence 9764
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.1e-39 Score=304.25 Aligned_cols=290 Identities=17% Similarity=0.302 Sum_probs=238.9
Q ss_pred cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC----C----eeEEEeeCCCcEEEEEECC-CCcEEEEecCCCcE
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----Q----KTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVC 133 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 133 (389)
+.+|.+.|.+++|+|++++||+|+.|+.|+||+.... . ....+. +...+.+++|++ .+.+|++++.||.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4459999999999999999999999999999997542 1 122222 346789999987 57899999999999
Q ss_pred EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
++||+.++. ....+.+|.+.|++++|+|..+.+|++|+.||.|++||+.++.....+ . +...+.++.
T Consensus 558 ~lWd~~~~~-------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-----~-~~~~v~~v~ 624 (793)
T PLN00181 558 QVWDVARSQ-------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-----K-TKANICCVQ 624 (793)
T ss_pred EEEECCCCe-------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-----e-cCCCeEEEE
Confidence 999998754 567788999999999999854578999999999999999998888776 3 335789999
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC------ceeeE
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG------HQLQV 287 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~ 287 (389)
|++.++.+|++|+.||.|++||++....++..+.+|...|.++.|. ++.+|++++.|+.|++||++.. ..+..
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~ 703 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS 703 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE
Confidence 9776899999999999999999997755677888999999999997 7789999999999999999753 33444
Q ss_pred eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC---------cCCCCCCCeeEEEECCCCCeE
Q 016458 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS---------LQNSHEGRITCLGLSADGSAL 358 (389)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l 358 (389)
+.. +...+..++|+|++.+|++|+.||.|++|+.....++..+.. ....+...|.+++|+|++..|
T Consensus 704 ~~g-----h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~l 778 (793)
T PLN00181 704 FMG-----HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTL 778 (793)
T ss_pred EcC-----CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeE
Confidence 433 233588999999999999999999999999876544432210 012355679999999999999
Q ss_pred EeeeCCCeeEEeecceec
Q 016458 359 CTGSWDTNLKVNLGFWRV 376 (389)
Q Consensus 359 ~~~~~dg~i~i~~~~W~~ 376 (389)
++|+.||.|+| |++
T Consensus 779 va~~~dG~I~i----~~~ 792 (793)
T PLN00181 779 VAANSTGNIKI----LEM 792 (793)
T ss_pred EEecCCCcEEE----Eec
Confidence 99999999999 986
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-40 Score=244.66 Aligned_cols=284 Identities=22% Similarity=0.321 Sum_probs=249.1
Q ss_pred eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (389)
+..+.|..|+++|.++.|+-+|+|.++++.|.+|++||...+..++++.+|...|..++.+.++..+++|+.|..|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC--eeEEEecCcccCCCCCCeeEEEee
Q 016458 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
+++++ ..+.+.+|.+.|+.+.|+.+. ..+++|+.|.++++||-++. ++++.+ ....+.|.++...
T Consensus 88 V~TGk-------v~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQil-----dea~D~V~Si~v~ 154 (307)
T KOG0316|consen 88 VNTGK-------VDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQIL-----DEAKDGVSSIDVA 154 (307)
T ss_pred cccCe-------eeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchh-----hhhcCceeEEEec
Confidence 99987 789999999999999999986 79999999999999998875 555555 5677889999985
Q ss_pred CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 295 (389)
...+++|+.||+++.||++.+ ...... ...+|++++|+++++..++++.|+++++.|-.+|+.+..+..+...
T Consensus 155 ---~heIvaGS~DGtvRtydiR~G-~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~- 227 (307)
T KOG0316|consen 155 ---EHEIVAGSVDGTVRTYDIRKG-TLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM- 227 (307)
T ss_pred ---ccEEEeeccCCcEEEEEeecc-eeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc-
Confidence 478999999999999999987 443333 3458999999999999999999999999999999999888765433
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCC-eeEEEECCCCCeEEeeeCCCee
Q 016458 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR-ITCLGLSADGSALCTGSWDTNL 367 (389)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i 367 (389)
..-..++++.....+++|++||.|++||+.....+..+ ..+... |++++++|.-..|+++...+.+
T Consensus 228 --eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~----~~~~~v~v~dl~~hp~~~~f~~A~~~~~~ 294 (307)
T KOG0316|consen 228 --EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKL----SVVSTVIVTDLSCHPTMDDFITATGHGDL 294 (307)
T ss_pred --eeeeeeeecccceeEEeccCCceEEEEEeccceeeeee----ccCCceeEEeeecccCccceeEecCCcee
Confidence 23466788888889999999999999999999999888 667776 8999999987777777654433
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-40 Score=281.26 Aligned_cols=328 Identities=22% Similarity=0.328 Sum_probs=274.3
Q ss_pred cccccccCCCCCcccCCCcceeeeeccc-ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEE
Q 016458 38 VAGYSRSQGRAPVSFGPTDLVCCRTLQG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116 (389)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~ 116 (389)
...+...+......|..+..++++.+++ |++||.-++|+|.+..|++|+.||.++|||+..+...+.+++|.+.|.++.
T Consensus 75 ~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~ 154 (775)
T KOG0319|consen 75 EVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLL 154 (775)
T ss_pred cEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEE
Confidence 3444555666777888888899999999 999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCc--EEEEecCCCcEEEEeCCCCC----------------------------------------------------
Q 016458 117 FSPTGQ--SVACGGLDSVCSIFNLNSPT---------------------------------------------------- 142 (389)
Q Consensus 117 ~~~~~~--~l~~~~~dg~i~vw~~~~~~---------------------------------------------------- 142 (389)
|+|+-+ .|++|..|+.+++||+....
T Consensus 155 F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye 234 (775)
T KOG0319|consen 155 FHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE 234 (775)
T ss_pred eCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhh
Confidence 998654 47888888899999888433
Q ss_pred --------------------------------------------------------------------------------
Q 016458 143 -------------------------------------------------------------------------------- 142 (389)
Q Consensus 143 -------------------------------------------------------------------------------- 142 (389)
T Consensus 235 ~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 235 SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence
Q ss_pred ------------------C----------C-------CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458 143 ------------------D----------K-------DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (389)
Q Consensus 143 ------------------~----------~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 187 (389)
. . .........+.+|...|.++....+| -+|++|+.|.++++|.
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr 393 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWR 393 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEE
Confidence 0 0 00001123566788888888855555 6899999999999998
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC--c--cee----EEeeeccceEEEEEe
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--R--AVR----TFHGHEGDVNTVKFF 259 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~--~~~----~~~~~~~~i~~~~~~ 259 (389)
++++...... .....+|...|.+++++.....+|++++.|+++++|++.... . ... ....|...|++++++
T Consensus 394 ~~~~~~~~~~-~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 394 LNNNCSKSLC-VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred ecCCcchhhh-hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 8544322211 112268999999999988778899999999999999998621 1 111 235699999999999
Q ss_pred cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC
Q 016458 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (389)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (389)
|+.+++++|+.|.+.++|++........+..+.. .+.++.|+|..+.+++++.|++|+||.+.+..++.++
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-----Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~---- 543 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-----GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF---- 543 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeCCcc-----ceEEEEeccccceeEeccCCceEEEEEeccceeeeee----
Confidence 9999999999999999999998888888866554 4999999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
.+|...|..+.|-.+|+.|++++.||.+++ |+++++.
T Consensus 544 eGH~~aVlra~F~~~~~qliS~~adGliKl----Wnikt~e 580 (775)
T KOG0319|consen 544 EGHTSAVLRASFIRNGKQLISAGADGLIKL----WNIKTNE 580 (775)
T ss_pred cCccceeEeeeeeeCCcEEEeccCCCcEEE----Eeccchh
Confidence 899999999999999999999999999999 9999875
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-39 Score=275.85 Aligned_cols=305 Identities=22% Similarity=0.406 Sum_probs=258.8
Q ss_pred CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe--eEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (389)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (389)
.++...+++.||...|.++.|+.|.++|++|+.|.++++|.+...+. ...+.+|...|..+-|..+...+++.+.||.
T Consensus 133 ~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~ 212 (893)
T KOG0291|consen 133 NPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGA 212 (893)
T ss_pred CcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCce
Confidence 45678889999999999999999999999999999999999887666 6677899999999999999999999999999
Q ss_pred EEEEeCCCCCC------------------C-CCC----------------------------------------------
Q 016458 133 CSIFNLNSPTD------------------K-DGN---------------------------------------------- 147 (389)
Q Consensus 133 i~vw~~~~~~~------------------~-~~~---------------------------------------------- 147 (389)
+.+|....... . ..+
T Consensus 213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Ly 292 (893)
T KOG0291|consen 213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLY 292 (893)
T ss_pred EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEE
Confidence 99998872100 0 000
Q ss_pred ----CcceeeecccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458 148 ----LPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (389)
Q Consensus 148 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (389)
..+++.+.-...+|..+.|+..|+ .++.|+ .-|.+.||+..+...+... .+|...+.+++++| ++.++
T Consensus 293 elP~f~lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQ-----QgH~~~i~~l~YSp-Dgq~i 365 (893)
T KOG0291|consen 293 ELPDFNLIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQ-----QGHSDRITSLAYSP-DGQLI 365 (893)
T ss_pred ecCCceEEEEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeec-----cccccceeeEEECC-CCcEE
Confidence 000011111123455566666664 455444 4589999999988877776 79999999999999 99999
Q ss_pred EEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeE
Q 016458 223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 302 (389)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~ 302 (389)
++|+.||.|++||...+ -++.++..|...|+.+.|+..++.+++++.||+|+.||+...+..+++..+... ...+
T Consensus 366 aTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~----Qfsc 440 (893)
T KOG0291|consen 366 ATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI----QFSC 440 (893)
T ss_pred EeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce----eeeE
Confidence 99999999999999987 899999999999999999999999999999999999999999998888775543 4789
Q ss_pred EEeCCCCCEEEEEecCC-cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 303 IAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 303 ~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
++..|.|..+++|+.|. .|.+|++++|+.+-.+ .+|++||.+++|+|++..|+++++|.+|++ |++-..
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL----sGHEgPVs~l~f~~~~~~LaS~SWDkTVRi----W~if~s 510 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL----SGHEGPVSGLSFSPDGSLLASGSWDKTVRI----WDIFSS 510 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCeeeehh----cCCCCcceeeEEccccCeEEeccccceEEE----EEeecc
Confidence 99999999999998886 6999999999999999 899999999999999999999999999999 998654
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-40 Score=277.18 Aligned_cols=288 Identities=23% Similarity=0.378 Sum_probs=264.9
Q ss_pred eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~ 138 (389)
..+++..|+..|.++.|+|...+++++-.+|.|.|||.++...+..+.....+|.++.|-+..+.+++|+.|..|+||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34567779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeCC
Q 016458 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGS 217 (389)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 217 (389)
++.. ....+..|...|.+++.+|.. .++++++.|-.|++||.+.+ .+...+ .+|...|++++|+|.
T Consensus 85 nt~e-------kV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtf-----eGH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 85 NTGE-------KVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTF-----EGHEHYVMQVAFNPK 151 (794)
T ss_pred ccce-------eeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEE-----cCcceEEEEEEecCC
Confidence 9865 688999999999999999997 68999999999999999886 556667 899999999999999
Q ss_pred CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 295 (389)
+.+.+++++-|++|++|.+.++ .+..++.+|...|+|++|-+ |..+|++|+.|..|++||..+..++.++..+...
T Consensus 152 D~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N- 229 (794)
T KOG0276|consen 152 DPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN- 229 (794)
T ss_pred CccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc-
Confidence 9999999999999999999988 88889999999999999988 4569999999999999999999999988765554
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
|+.++|+|.-..+++|+.||+++||+..+-+...++ ....++|.|++-.+.+..++.|...|.+.+
T Consensus 230 ----vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL----n~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 230 ----VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL----NYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ----ceEEEecCCCcEEEEecCCccEEEecCcceehhhhh----hcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999999999999999988888887 566779999999998888999988888876
No 30
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-40 Score=260.66 Aligned_cols=296 Identities=19% Similarity=0.361 Sum_probs=245.6
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcE
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 133 (389)
.+..+.|..|++.|.-+.||++|++||+|+.|.+..+|.+.... ..+++.+|..+|..+.||||.++|++++.+..+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 35667899999999999999999999999999999999876544 477888999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
.+||..++... ...-.++...+.+++|.||+ ..+++|+.|+.+..||+.... ..... ......|.+++
T Consensus 294 ~lwDv~tgd~~------~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-~~~W~----gvr~~~v~dla 361 (519)
T KOG0293|consen 294 SLWDVDTGDLR------HLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-LGNWE----GVRDPKVHDLA 361 (519)
T ss_pred eeccCCcchhh------hhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-hhccc----ccccceeEEEE
Confidence 99999986521 11122356789999999998 679999999999999987654 22221 23345699999
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (389)
..+ +++.+++.+.|..|++|+.... .... +.....+|++++.|.+++++++.-.+..+++||+...+.+..+..+..
T Consensus 362 it~-Dgk~vl~v~~d~~i~l~~~e~~-~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq 438 (519)
T KOG0293|consen 362 ITY-DGKYVLLVTVDKKIRLYNREAR-VDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ 438 (519)
T ss_pred EcC-CCcEEEEEecccceeeechhhh-hhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc
Confidence 998 8888888889999999998754 3322 333556899999999999999999999999999997777766655432
Q ss_pred CCCCCCeeEEEeCC-CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEeeeCCCeeEEee
Q 016458 294 ENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVNL 371 (389)
Q Consensus 294 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~ 371 (389)
...+..-||-- +..++++|++|+.|+||+..+++++..+ .+|...|++++|+| +...+|+||.||+|+|
T Consensus 439 ---~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L----sGHs~~vNcVswNP~~p~m~ASasDDgtIRI-- 509 (519)
T KOG0293|consen 439 ---GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL----SGHSKTVNCVSWNPADPEMFASASDDGTIRI-- 509 (519)
T ss_pred ---cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee----cCCcceeeEEecCCCCHHHhhccCCCCeEEE--
Confidence 22355666754 4479999999999999999999999999 89999999999999 6778999999999999
Q ss_pred cceeccc
Q 016458 372 GFWRVQE 378 (389)
Q Consensus 372 ~~W~~~~ 378 (389)
|....
T Consensus 510 --Wg~~~ 514 (519)
T KOG0293|consen 510 --WGPSD 514 (519)
T ss_pred --ecCCc
Confidence 98764
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-40 Score=279.66 Aligned_cols=314 Identities=21% Similarity=0.314 Sum_probs=275.3
Q ss_pred CCCCcccCCCcceeeeecccccCcEEEEEEc-CCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458 46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWT-SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (389)
++....++..+++..+.+.|..+.|.++.|- |+.++||.++..+.+++|+..+..+. .+.+|.+.|.++....+|.+|
T Consensus 302 eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~ll 380 (775)
T KOG0319|consen 302 EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLL 380 (775)
T ss_pred cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEE
Confidence 3444556778889999999999999999985 57789999999999999998877665 889999999999977788999
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEe----cCc
Q 016458 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF----GGE 200 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~ 200 (389)
++|+.|.++++|.++.+. ....+.....+|.+.|.+++++..+...|++++.|+++++|++...+..... ...
T Consensus 381 at~sKD~svilWr~~~~~---~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNC---SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred EEecCCceEEEEEecCCc---chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence 999999999999995533 3344566778999999999999888899999999999999999873222111 011
Q ss_pred ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (389)
....|...|++++++| +..++++|+.|.+.+||++... .....+.+|...|.++.|+|..+.++++|.|++|+||.+.
T Consensus 458 t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred HHHhhcccccceEecC-CCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 2357899999999999 8899999999999999999966 8889999999999999999999999999999999999999
Q ss_pred CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 360 (389)
+..++.++..+.. .|..+.|-.+|+.|++++.||.|++|++.++.+..++ ..|...|.+++.++.+..++|
T Consensus 536 ~fSClkT~eGH~~-----aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl----D~H~DrvWaL~~~~~~~~~~t 606 (775)
T KOG0319|consen 536 TFSCLKTFEGHTS-----AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL----DAHNDRVWALSVSPLLDMFVT 606 (775)
T ss_pred cceeeeeecCccc-----eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh----hhccceeEEEeecCccceeEe
Confidence 9999999966554 4999999999999999999999999999999999999 899999999999999999999
Q ss_pred eeCCCeeEEeecceeccc
Q 016458 361 GSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 361 ~~~dg~i~i~~~~W~~~~ 378 (389)
|+.||.|.+ |.=.+
T Consensus 607 gg~Dg~i~~----wkD~T 620 (775)
T KOG0319|consen 607 GGGDGRIIF----WKDVT 620 (775)
T ss_pred cCCCeEEEE----eecCc
Confidence 999999999 86544
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.7e-40 Score=278.97 Aligned_cols=216 Identities=28% Similarity=0.502 Sum_probs=203.8
Q ss_pred CCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458 53 GPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (389)
Q Consensus 53 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (389)
++......++|.||.++|..+.|+|+.++|++++.|++||+|.+.+...+..+++|..+|..+.|+|.|-++|+++.|++
T Consensus 437 D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 437 DDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred cccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence 44455667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
.++|..+... ..+.+.+|.+.|.|+.|+|+. +++++|+.|.+|++||+.+|..++.| .+|.++|.++
T Consensus 517 ArLWs~d~~~-------PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF-----~GH~~~V~al 583 (707)
T KOG0263|consen 517 ARLWSTDHNK-------PLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIF-----TGHKGPVTAL 583 (707)
T ss_pred eeeeecccCC-------chhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEe-----cCCCCceEEE
Confidence 9999998744 678899999999999999997 89999999999999999999999999 8999999999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
+|+| .+.+|++|+.||.|.+||+.++ ..+..+.+|.+.|.++.|+.+|..|++|+.|.+|++||+....
T Consensus 584 ~~Sp-~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 584 AFSP-CGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEcC-CCceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999 9999999999999999999988 8889999999999999999999999999999999999987643
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.6e-41 Score=264.96 Aligned_cols=255 Identities=22% Similarity=0.415 Sum_probs=223.9
Q ss_pred cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEecCC
Q 016458 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLD 130 (389)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d 130 (389)
|.-..+.....+++|..+|.++.|++++.++++|+.+|.|++|+.. ...+..+..|. ..|++++|+|+...+++++.|
T Consensus 123 WNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdD 201 (464)
T KOG0284|consen 123 WNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDD 201 (464)
T ss_pred ecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCC
Confidence 3333334444577899999999999999999999999999999964 34455555554 899999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 210 (389)
|+|+|||....+ ....+.+|.-.|.++.|+|.. .++++++.|..|++||.+++.++..+ ..|...|.
T Consensus 202 g~ikiWdf~~~k-------ee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tl-----h~HKntVl 268 (464)
T KOG0284|consen 202 GTIKIWDFRMPK-------EERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATL-----HGHKNTVL 268 (464)
T ss_pred CeEEEEeccCCc-------hhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhh-----hhccceEE
Confidence 999999998765 456679999999999999986 79999999999999999999999999 89999999
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (389)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (389)
.+.|+| ++++|++++.|..++++|+++. +.+..+++|...++++.|+| ...+|.+|+.||.|..|.+...+++..+.
T Consensus 269 ~~~f~~-n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~ 346 (464)
T KOG0284|consen 269 AVKFNP-NGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP 346 (464)
T ss_pred EEEEcC-CCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC
Confidence 999999 7799999999999999999976 78889999999999999999 67789999999999999998666665554
Q ss_pred ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
.. +...|.+++|+|-|..|++|+.|.++++|.-
T Consensus 347 ~A----Hd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 347 PA----HDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cc----cccceeeeeccccceeEeecCCCcceeeecc
Confidence 43 3446999999999999999999999999974
No 34
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-37 Score=254.14 Aligned_cols=302 Identities=17% Similarity=0.288 Sum_probs=259.8
Q ss_pred CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee--EEEeeCCCcEEEEEECCCCcEEEEecCC--
Q 016458 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT--HAIKLPCAWVMTCAFSPTGQSVACGGLD-- 130 (389)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 130 (389)
.++.....+.+|..+++-..|+|.|.|+|+|...|+|||||....+.+ .+++.-.++|..++|+++++++++.++.
T Consensus 47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc
Confidence 344556678899999999999999999999999999999998664433 3456667899999999999999887653
Q ss_pred --CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458 131 --SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (389)
Q Consensus 131 --g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 208 (389)
|.+.+||..+ ....+.+|...|.++.|-|..+-.+++|+.|++|.+|+-.-.+....+ ..|...
T Consensus 127 rfg~~F~~DSG~---------SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-----r~HskF 192 (603)
T KOG0318|consen 127 RFGHVFLWDSGN---------SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-----REHSKF 192 (603)
T ss_pred ceeEEEEecCCC---------ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-----cccccc
Confidence 4566777655 567789999999999999999889999999999999997766666666 689999
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe---eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 285 (389)
|.++.|+| ++.++++++.||.+.+||-.++ +.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+.+.+..
T Consensus 193 V~~VRysP-DG~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 193 VNCVRYSP-DGSRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred eeeEEECC-CCCeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 99999999 7999999999999999999988 7777776 89999999999999999999999999999999999988
Q ss_pred eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
.++...... ......+.|- +..|++.+.+|.|.+++.....++..+ .+|...|+++..++|+++|++|+.||
T Consensus 271 ~t~~~~~~v--~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i----~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 271 STWPMGSTV--EDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVI----SGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EEeecCCch--hceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhhee----cccccceeEEEEcCCCCEEEeeccCc
Confidence 888765441 1123455564 568899999999999999999988888 89999999999999999999999999
Q ss_pred eeEEeecceecccCcccCc
Q 016458 366 NLKVNLGFWRVQEGALSPW 384 (389)
Q Consensus 366 ~i~i~~~~W~~~~~~~~~~ 384 (389)
.|.- |+..+|.--+.
T Consensus 343 ~I~~----W~~~~g~~~~~ 357 (603)
T KOG0318|consen 343 HINS----WDSGSGTSDRL 357 (603)
T ss_pred eEEE----EecCCcccccc
Confidence 9999 99999876554
No 35
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-39 Score=240.07 Aligned_cols=283 Identities=18% Similarity=0.279 Sum_probs=241.8
Q ss_pred ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (389)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (389)
.|+||..+++.+.|+.+|.+|++++.|.++.+|-..+|+.+.++.+|.+.|.|+..+.+.+.+++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee-----CCCeEEEEeCCC-------CeeEEEecCcccCCCCCCe
Q 016458 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----GDQTCVLWDITT-------GLRTSVFGGEFQSGHTADV 209 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~v 209 (389)
+ ....++ ...+|..+.|++++ ++++... ..+.|.++|++. .++...+ ..+.+.+
T Consensus 85 k-------~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-----~t~~ski 150 (327)
T KOG0643|consen 85 K-------QLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-----PTPDSKI 150 (327)
T ss_pred c-------EEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-----cCCccce
Confidence 6 344443 45789999999998 4555443 357899999983 3445555 5667899
Q ss_pred eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (389)
+.+-|.| .+..|++|..||.|.+||.+++.+.+.....|...|+.++++|+..++++++.|.+-++||.++...+.++.
T Consensus 151 t~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 151 TSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred eeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 9999999 888999999999999999999877788888899999999999999999999999999999999999888886
Q ss_pred ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcE--------------EEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDC--------------YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i--------------~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
... |+++.+++|...+++.|+..... ++|++-..+.+..+ ++|-++|++++|+|+|
T Consensus 230 te~------PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv----kGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 230 TER------PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV----KGHFGPINSVAFHPDG 299 (327)
T ss_pred ecc------cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc----cccccCcceeEECCCC
Confidence 654 48999999988877776543222 22333233344444 7999999999999999
Q ss_pred CeEEeeeCCCeeEE
Q 016458 356 SALCTGSWDTNLKV 369 (389)
Q Consensus 356 ~~l~~~~~dg~i~i 369 (389)
+..++|+.||.|++
T Consensus 300 ksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRL 313 (327)
T ss_pred cccccCCCCceEEE
Confidence 99999999999999
No 36
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=3.3e-39 Score=255.72 Aligned_cols=291 Identities=21% Similarity=0.349 Sum_probs=251.8
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcE
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 133 (389)
+......+..|.+.|..+.|-++...|++|+.|..|++|+....+ ...++.+..++|+.+.|.++++.+++++.|+.+
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 446667888999999999999998899999999999999987666 667777888899999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
++|+++... ...++.+|.+.|+++.|.... ..+++|+.|.+|+.||+....+...+ .....+..+.
T Consensus 244 r~Wnvd~~r-------~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~------l~~S~cnDI~ 309 (459)
T KOG0288|consen 244 RLWNVDSLR-------LRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTV------LPGSQCNDIV 309 (459)
T ss_pred eeeeccchh-------hhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccc------cccccccceE
Confidence 999998755 778899999999999998875 45999999999999999998887775 3445566666
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (389)
.+ ...+++|..|+.|++||.+.. .+......+. .|+++..++++..|.+++.|..+.+.|+++......+.....
T Consensus 310 ~~---~~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~ 384 (459)
T KOG0288|consen 310 CS---ISDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF 384 (459)
T ss_pred ec---ceeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence 65 356889999999999999987 6666666554 899999999999999999999999999999887777755432
Q ss_pred CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCC-CeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG-RITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
......+.+.|||++.|+++|+.||.|+||++.+++....+. ..+.. .|++++|+|.|..|++++.++.+.+
T Consensus 385 -k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~---~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 385 -KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS---LSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred -ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec---cCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 223348999999999999999999999999999999998885 23333 6999999999999999999999999
No 37
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=233.43 Aligned_cols=301 Identities=20% Similarity=0.341 Sum_probs=254.8
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC--CCcEE
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL--DSVCS 134 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~ 134 (389)
+++.+.|..-.+.|+++.|+++|.+|++++.|.+++|||..+++.+.++..+...+..++|......++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 4455667777889999999999999999999999999999999999999998888999999877777777666 88999
Q ss_pred EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEe
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 214 (389)
..++.+++ ..+.+.+|...|..++.+|-+ ..+++++.|++|++||++..++...+ +...-..+++
T Consensus 84 yLsl~dNk-------ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l-------~~~~~pi~Af 148 (311)
T KOG1446|consen 84 YLSLHDNK-------YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLL-------NLSGRPIAAF 148 (311)
T ss_pred EEEeecCc-------eEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEE-------ecCCCcceeE
Confidence 99998866 789999999999999999987 68999999999999999988877766 2233445788
Q ss_pred eCCCCcEEEEeeCCCceEEEeCCCC-CcceeEEee---eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458 215 SGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (389)
Q Consensus 215 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (389)
.| .+-++|++.....|++||+|.. +.+...+.. .....+.+.|+|||++|+.++..+.+++.|.-+|..+..+..
T Consensus 149 Dp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~ 227 (311)
T KOG1446|consen 149 DP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG 227 (311)
T ss_pred CC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee
Confidence 88 8888888888889999999976 345555543 356789999999999999999999999999999998888877
Q ss_pred cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEe
Q 016458 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVN 370 (389)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 370 (389)
....... -...+|+||++++++|+.||+|++|+++++..+..+. ..+.+++.++.|+|.-..++++ +..+.+
T Consensus 228 ~~~~~~~--~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~---~~~~~~~~~~~fnP~~~mf~sa--~s~l~f- 299 (311)
T KOG1446|consen 228 YPNAGNL--PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR---GPNGGPVSCVRFNPRYAMFVSA--SSNLVF- 299 (311)
T ss_pred ccCCCCc--ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec---CCCCCCccccccCCceeeeeec--CceEEE-
Confidence 6544322 2577899999999999999999999999999999984 2378999999999986666655 567777
Q ss_pred ecceecccCcccCc
Q 016458 371 LGFWRVQEGALSPW 384 (389)
Q Consensus 371 ~~~W~~~~~~~~~~ 384 (389)
|=....++.+|
T Consensus 300 ---w~p~~~~~~~~ 310 (311)
T KOG1446|consen 300 ---WLPDEDALPAH 310 (311)
T ss_pred ---EeccccccCCC
Confidence 98888877765
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-39 Score=251.39 Aligned_cols=266 Identities=21% Similarity=0.328 Sum_probs=244.2
Q ss_pred cccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC-CCeeEEEeeCCCcEEEEEECCC
Q 016458 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPT 120 (389)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~ 120 (389)
..+.+.....|+..+.++.+.|+||.+.|..++|+..|++||+++.|=.+++||..+ .+++....+|...|.+++|-|.
T Consensus 125 ~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~ 204 (406)
T KOG0295|consen 125 SASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL 204 (406)
T ss_pred EecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec
Confidence 344567778899999999999999999999999999999999999998899999977 5677788899999999999999
Q ss_pred CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (389)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 200 (389)
|.++++++.|.+|+.|++.++- +..++.+|...|..+..+.|| .++++++.|.+|++|-+.++++...+
T Consensus 205 gd~ilS~srD~tik~We~~tg~-------cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~l--- 273 (406)
T KOG0295|consen 205 GDHILSCSRDNTIKAWECDTGY-------CVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAEL--- 273 (406)
T ss_pred CCeeeecccccceeEEecccce-------eEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhh---
Confidence 9999999999999999999866 789999999999999999998 89999999999999999999888888
Q ss_pred ccCCCCCCeeEEEeeCC--------------CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEE
Q 016458 201 FQSGHTADVLSVSISGS--------------NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (389)
Q Consensus 201 ~~~~~~~~v~~~~~~~~--------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (389)
..|.-+|.+++|.|. .+.++++++.|++|++||+.++ .++.++.+|.+.|..++|+|.|+||+
T Consensus 274 --R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ 350 (406)
T KOG0295|consen 274 --REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYIL 350 (406)
T ss_pred --hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEE
Confidence 789999999999762 2358999999999999999998 89999999999999999999999999
Q ss_pred EEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
++..|+++++||+++.++...+..+... ++++.|..+..++++|+-|..+++|.-
T Consensus 351 ScaDDktlrvwdl~~~~cmk~~~ah~hf-----vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 351 SCADDKTLRVWDLKNLQCMKTLEAHEHF-----VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecCCcEEEEEeccceeeeccCCCcce-----eEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999988765544 999999999999999999999999963
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.7e-39 Score=249.37 Aligned_cols=251 Identities=24% Similarity=0.422 Sum_probs=231.9
Q ss_pred CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC
Q 016458 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179 (389)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 179 (389)
+....+.+|.++|.|+++.|.+.+|++|+.|++|+|||+.+++ +..++.+|...|..+++++.. .++++++.
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------LkltltGhi~~vr~vavS~rH-pYlFs~ge 213 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------LKLTLTGHIETVRGVAVSKRH-PYLFSAGE 213 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------EEEeecchhheeeeeeecccC-ceEEEecC
Confidence 3455678899999999999999999999999999999999977 778899999999999999986 69999999
Q ss_pred CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEe
Q 016458 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259 (389)
Q Consensus 180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 259 (389)
|+.|+.||++..+.+..+ .+|-+.|.+++.+| .-+.|++|+.|.++++||+++. ..+..+.+|..+|.++.+.
T Consensus 214 dk~VKCwDLe~nkvIR~Y-----hGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHY-----HGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred CCeeEEEechhhhhHHHh-----ccccceeEEEeccc-cceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEee
Confidence 999999999999999998 89999999999999 7789999999999999999998 8899999999999999999
Q ss_pred cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC
Q 016458 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (389)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (389)
|-...+++|+.|++|++||++.++....+..+.. .+.+++.+|....+|+++.| .|+-|++..+..+..+
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-----svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl---- 356 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-----SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL---- 356 (460)
T ss_pred cCCCceEEecCCceEEEeeeccCceeEeeecccc-----eeeEEecCCchhhhhccCCc-cceeccCCccchhhcc----
Confidence 9788899999999999999999999888876555 49999999999999999888 6999999999999887
Q ss_pred CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
.+|...|.+++...|| ++++|+..|.+.. ||.++|-
T Consensus 357 sgh~~iintl~~nsD~-v~~~G~dng~~~f----wdwksg~ 392 (460)
T KOG0285|consen 357 SGHNAIINTLSVNSDG-VLVSGGDNGSIMF----WDWKSGH 392 (460)
T ss_pred ccccceeeeeeeccCc-eEEEcCCceEEEE----EecCcCc
Confidence 8999999999998877 7889999999998 9999884
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.2e-39 Score=238.56 Aligned_cols=290 Identities=20% Similarity=0.329 Sum_probs=255.6
Q ss_pred ecccccCcEEEEEEcC---CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458 62 TLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (389)
Q Consensus 62 ~l~~h~~~v~~~~~~~---~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~ 138 (389)
+..||+.+|..++|+| +|-+|++++.||.-.+-+-++|.-+.++.+|.+.|.....+.+....++++.|-+-++||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 5679999999999986 8889999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-EEEecCcccCCCCCCeeEEEeeCC
Q 016458 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISGS 217 (389)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~ 217 (389)
-++. .... ..|+.-|..++|+.+. ++|++|+.+..++|||++..+. ...+ .+|.+.|..+.|..
T Consensus 89 ~tgd-------elhs-f~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~-----~ghtg~Ir~v~wc~- 153 (334)
T KOG0278|consen 89 VTGD-------ELHS-FEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEI-----SGHTGGIRTVLWCH- 153 (334)
T ss_pred hhhh-------hhhh-hhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhh-----cCCCCcceeEEEec-
Confidence 8765 2333 3478889999999997 7899999999999999987643 3333 68999999999998
Q ss_pred CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (389)
..+.+++++.|++|++||.+++ ..++.+. .+.+|+++.++++|++|.++ ..+.|.+||..+...+..+..+..
T Consensus 154 eD~~iLSSadd~tVRLWD~rTg-t~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n---- 226 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTG-TEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN---- 226 (334)
T ss_pred cCceEEeeccCCceEEEEeccC-cEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc----
Confidence 6778888899999999999998 6666665 56789999999999877665 457899999999988888766553
Q ss_pred CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
|.+..++|+...+++|+.|+.++.||..++..+..+. .+|.++|.|+.|+|||...++|+.||+|++ |.+.
T Consensus 227 --V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n---kgh~gpVhcVrFSPdGE~yAsGSEDGTirl----WQt~ 297 (334)
T KOG0278|consen 227 --VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN---KGHFGPVHCVRFSPDGELYASGSEDGTIRL----WQTT 297 (334)
T ss_pred --cccccccCCCceEEecCcceEEEEEeccCCceeeecc---cCCCCceEEEEECCCCceeeccCCCceEEE----EEec
Confidence 8999999999999999999999999999999888753 799999999999999999999999999999 9999
Q ss_pred cCccc
Q 016458 378 EGALS 382 (389)
Q Consensus 378 ~~~~~ 382 (389)
.++..
T Consensus 298 ~~~~~ 302 (334)
T KOG0278|consen 298 PGKTY 302 (334)
T ss_pred CCCch
Confidence 88765
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.3e-40 Score=254.07 Aligned_cols=281 Identities=24% Similarity=0.398 Sum_probs=240.3
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (389)
Q Consensus 66 h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (389)
....|+|+.+.. ..+++|..|++|+|||..+......+.+|.+.|.|+.|. .+.+++|+.|.+|+|||++++.
T Consensus 196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge--- 268 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE--- 268 (499)
T ss_pred cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc---
Confidence 456799999854 489999999999999999999999999999999999985 5699999999999999999876
Q ss_pred CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (389)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (389)
+..++..|...|..+.|+. .++++++.|.++.+||+.....+... ....+|...|+.+.|+. ++++++
T Consensus 269 ----~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~r--rVLvGHrAaVNvVdfd~---kyIVsA 336 (499)
T KOG0281|consen 269 ----PLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLR--RVLVGHRAAVNVVDFDD---KYIVSA 336 (499)
T ss_pred ----hhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHH--HHHhhhhhheeeecccc---ceEEEe
Confidence 7788899999999999985 58999999999999999876532211 11268999999999964 599999
Q ss_pred eCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (389)
Q Consensus 226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (389)
+.|.+|++|++.+. ..++.+.+|...|-|+.+ .++++++|+.|.+|++||+..|.++..+..+... |.++.|
T Consensus 337 SgDRTikvW~~st~-efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL-----vRciRF 408 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-----VRCIRF 408 (499)
T ss_pred cCCceEEEEeccce-eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHh-----hhheee
Confidence 99999999999988 899999999999999988 6889999999999999999999999988766554 999999
Q ss_pred CCCCCEEEEEecCCcEEEEEcccceEEEeecC-----cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-----LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
|.+.+++|..||+|+|||+..+........ ....|.+.|..+.|. ...+++++.|.+|-| ||+.++.
T Consensus 409 --d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILi----WdFl~~~ 480 (499)
T KOG0281|consen 409 --DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILI----WDFLNGP 480 (499)
T ss_pred --cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEE----EEcCCCC
Confidence 567899999999999999987654321110 015688999999995 557999999999999 9998774
Q ss_pred c
Q 016458 381 L 381 (389)
Q Consensus 381 ~ 381 (389)
.
T Consensus 481 ~ 481 (499)
T KOG0281|consen 481 P 481 (499)
T ss_pred c
Confidence 3
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=264.79 Aligned_cols=293 Identities=22% Similarity=0.387 Sum_probs=257.8
Q ss_pred eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (389)
-++.||+..|.++++|.+...+++|+. +.+++|+..+.++++++... .+.+..|.|.++++++|..+|.+.+||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 367799999999999999877887765 58999999999999988755 789999999999999999999999999987
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-----ee--EEEecCcccCCCCCCeeEEE
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-----LR--TSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~--~~~~~~~~~~~~~~~v~~~~ 213 (389)
.. .......|.+.|++++.+|++ ..+++|+.|.+|++||..-- .. ...+...........|.|+.
T Consensus 444 ~~-------l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~ 515 (888)
T KOG0306|consen 444 AS-------LVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS 515 (888)
T ss_pred hh-------hhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence 55 566777999999999999998 68999999999999997421 11 11111111124567899999
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (389)
++| ++.+|+++--|.++++|-+++. +....+.+|.-||.|+..+||++.+++|+.|..|++|-+.-|.+-..+..+..
T Consensus 516 ~Sp-dgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 516 VSP-DGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred EcC-CCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence 999 9999999999999999999988 77888999999999999999999999999999999999999998888866554
Q ss_pred CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecc
Q 016458 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGF 373 (389)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~ 373 (389)
.|+++.|-|...++++++.|+.|+-||-...+.+..+ .+|...|.|++.+|+|.++++++.|..|++
T Consensus 594 -----Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L----~~H~~ev~cLav~~~G~~vvs~shD~sIRl---- 660 (888)
T KOG0306|consen 594 -----SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL----DGHHSEVWCLAVSPNGSFVVSSSHDKSIRL---- 660 (888)
T ss_pred -----ceeEEEEcccceeEEEecCcceEEeechhhhhhheee----ccchheeeeeEEcCCCCeEEeccCCceeEe----
Confidence 4999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred eecccC
Q 016458 374 WRVQEG 379 (389)
Q Consensus 374 W~~~~~ 379 (389)
|.....
T Consensus 661 wE~tde 666 (888)
T KOG0306|consen 661 WERTDE 666 (888)
T ss_pred eeccCc
Confidence 987653
No 43
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-37 Score=238.33 Aligned_cols=307 Identities=23% Similarity=0.365 Sum_probs=259.8
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (389)
..++.+.|.||++.|..++.....+.+.+++.|.+.+||.++++.++..+.+|.+.|++++|++.+.++++++.|++.+|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 46778889999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred Ee------CCCCCC------------------------CC---CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458 136 FN------LNSPTD------------------------KD---GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (389)
Q Consensus 136 w~------~~~~~~------------------------~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (389)
|. +..+.. .. .-......+.+|.+.|.+..|...+ ..+++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeecccc
Confidence 97 222110 00 0011344677899999999999887 68999999999
Q ss_pred EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (389)
Q Consensus 183 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (389)
..+||++++..+..+ .+|....+.++-+| ..+++++++.|.+.++||++..-..+..|.+|...|+++.|..+
T Consensus 296 AnlwDVEtge~v~~L-----tGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d- 368 (481)
T KOG0300|consen 296 ANLWDVETGEVVNIL-----TGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD- 368 (481)
T ss_pred ceeeeeccCceeccc-----cCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-
Confidence 999999999999999 89999999999999 89999999999999999999776778899999999999999865
Q ss_pred CEEEEEecCCeEEEEECCCCcee-eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCC
Q 016458 263 NRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 341 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 341 (389)
..+++|+.|.+|++||+++.+.. .++... .+++.++.+..++.++.--.+..|++||+..............+
T Consensus 369 d~vVSgSDDrTvKvWdLrNMRsplATIRtd------S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg 442 (481)
T KOG0300|consen 369 DRVVSGSDDRTVKVWDLRNMRSPLATIRTD------SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQG 442 (481)
T ss_pred CceeecCCCceEEEeeeccccCcceeeecC------CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccc
Confidence 46999999999999999986644 333332 24899999999999999999999999999655443333233478
Q ss_pred CCCCeeEEEECCCC--CeEEeeeCCCeeEEeecceecccCc
Q 016458 342 HEGRITCLGLSADG--SALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 342 ~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
|...|+|.+|..+- .-|+++|-|..+.- |++...+
T Consensus 443 HrRMV~c~AW~eehp~cnLftcGFDR~v~g----W~in~p~ 479 (481)
T KOG0300|consen 443 HRRMVTCCAWLEEHPACNLFTCGFDRMVAG----WKINTPT 479 (481)
T ss_pred cceeeeeeeccccCcccccccccccceeee----eEecccC
Confidence 99999999998642 45889999999999 9987654
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-38 Score=269.65 Aligned_cols=286 Identities=20% Similarity=0.330 Sum_probs=251.8
Q ss_pred ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (389)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (389)
.|..-+..|..++|+|...+++++-..|.|++||.+-+..+..+..|.++|..++|+|++.++++|+.|-.|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 45556778999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (389)
+ +..++.+|-+.|..+.|++.- ..+++++.|.+|+||+..+.+++..+ .+|...|+|..|+| ...+
T Consensus 84 r-------clftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavl-----tGHnHYVMcAqFhp-tEDl 149 (1202)
T KOG0292|consen 84 R-------CLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVL-----TGHNHYVMCAQFHP-TEDL 149 (1202)
T ss_pred e-------ehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEE-----ecCceEEEeeccCC-ccce
Confidence 6 788899999999999999986 68999999999999999999999999 89999999999999 7889
Q ss_pred EEEeeCCCceEEEeCCCCC----------------------------cceeEEeeeccceEEEEEecCCCEEEEEecCCe
Q 016458 222 FVSGSCDSTARLWDTRVAS----------------------------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273 (389)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 273 (389)
+++++-|.+|++||+.... -....+.+|...|+-++|+|.-.+|++|+.|..
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq 229 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 229 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence 9999999999999985210 112356789999999999999999999999999
Q ss_pred EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
|++|.+...+.-. .....+|...|+++.|+|...++++.+.|+.|+|||+...+.+.++ ....+....++-+|
T Consensus 230 VKlWrmnetKaWE---vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf----rrendRFW~laahP 302 (1202)
T KOG0292|consen 230 VKLWRMNETKAWE---VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF----RRENDRFWILAAHP 302 (1202)
T ss_pred eeEEEecccccee---ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee----eccCCeEEEEEecC
Confidence 9999987644322 2222445556999999999999999999999999999999999998 56677899999999
Q ss_pred CCCeEEeeeCCCeeEE
Q 016458 354 DGSALCTGSWDTNLKV 369 (389)
Q Consensus 354 ~~~~l~~~~~dg~i~i 369 (389)
..+++++|.+.| +.|
T Consensus 303 ~lNLfAAgHDsG-m~V 317 (1202)
T KOG0292|consen 303 ELNLFAAGHDSG-MIV 317 (1202)
T ss_pred CcceeeeecCCc-eEE
Confidence 998777666555 445
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.4e-39 Score=251.52 Aligned_cols=269 Identities=25% Similarity=0.449 Sum_probs=233.4
Q ss_pred cccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC
Q 016458 40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119 (389)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 119 (389)
..+...+...+.|+.....+.+.|.||++.|.|+.|.. +.+++|+.|.+|++||+++++++.++-.|.+.|..+.|+
T Consensus 210 iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~- 286 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS- 286 (499)
T ss_pred hhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-
Confidence 34556677888999999999999999999999999965 499999999999999999999999999999999999996
Q ss_pred CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (389)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 199 (389)
+.++++++.|.+|.+||+..+. ...+...+.+|...|+.+.|+. +++++++.|.+|++|++.+++.+..+
T Consensus 287 -ng~mvtcSkDrsiaVWdm~sps----~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl-- 356 (499)
T KOG0281|consen 287 -NGYMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTL-- 356 (499)
T ss_pred -CCEEEEecCCceeEEEeccCch----HHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhh--
Confidence 6789999999999999999855 3446677889999999999975 59999999999999999999999999
Q ss_pred cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEEC
Q 016458 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279 (389)
Q Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 279 (389)
.+|...|-|+.+ +++++++|+.|.+|++||+..+ .+++.+.+|+.-|.++.| |.+.+++|+.||+|++||+
T Consensus 357 ---~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 357 ---NGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred ---hcccccceehhc---cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhheee--cCceeeeccccceEEEEec
Confidence 899999999887 6689999999999999999988 899999999999999999 5778999999999999999
Q ss_pred CCCceeeEe----eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458 280 RTGHQLQVY----YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (389)
Q Consensus 280 ~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (389)
..+...... ...+...+.+.|..+.| |...+++++.|.+|.|||+.++.+-
T Consensus 428 ~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 428 QAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 876544221 11112234446888888 5667888899999999999876554
No 46
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-37 Score=249.67 Aligned_cols=279 Identities=24% Similarity=0.386 Sum_probs=241.8
Q ss_pred cCcEEEEEEcCCCCe-EEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458 67 AGKVYSLDWTSERNR-IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (389)
.++|++++|+|..++ +|+++. -.+.||+..+......+......|.++.|..||++|++|...|.|+|||..+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~--- 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV--- 101 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH---
Confidence 357999999996543 454444 479999998888877777777789999999999999999999999999966532
Q ss_pred CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (389)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (389)
....+.+|..++..+.|+|+++..+++|+.|+.+++||+.+......+ .+|.+.|.+.+|+|.++.++++|
T Consensus 102 ----iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l-----~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 102 ----ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL-----SGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred ----HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-----cCCcceeEeeccccCCCeEEEec
Confidence 677889999999999999999899999999999999999999875566 79999999999999888899999
Q ss_pred eCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (389)
Q Consensus 226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (389)
+.||.|++||++.....+..+. |..+|..+.+-|.|..+++++. ..|++||+.+|......... |...|+|+++
T Consensus 173 sYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~----H~KtVTcL~l 246 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN----HNKTVTCLRL 246 (487)
T ss_pred CCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhc----ccceEEEEEe
Confidence 9999999999998755555554 9999999999999999999876 48999999976655444332 3335999999
Q ss_pred CCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
..++..|++|+-|+.+++||+.+.+.+..+ .-.++|.+++.+|+++.++.|..||.+.+
T Consensus 247 ~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-----~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 247 ASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-----KYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ecCCceEeecccccceEEEEccceEEEEee-----ecccceeeEEecCCCceEEEecccceeee
Confidence 999999999999999999999999999887 45789999999999999999999999987
No 47
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6e-37 Score=228.94 Aligned_cols=278 Identities=19% Similarity=0.241 Sum_probs=241.2
Q ss_pred eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE--EeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEe
Q 016458 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--IKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFN 137 (389)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~ 137 (389)
+.+++|...|.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+| +...+++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 67889999999999999999999999999999999987765443 457888899999988 667899999999999999
Q ss_pred CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 217 (389)
+..++ +........+. .-+.|+|+| .+++.++.|..|.+.|.++.+..... .....+..++|+.
T Consensus 94 ~r~~k-------~~~~i~~~~en-i~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~------~~~~e~ne~~w~~- 157 (313)
T KOG1407|consen 94 IRSGK-------CTARIETKGEN-INITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEE------QFKFEVNEISWNN- 157 (313)
T ss_pred eccCc-------EEEEeeccCcc-eEEEEcCCC-CEEEEecCcccEEEEEecccceeehh------cccceeeeeeecC-
Confidence 99865 44444433333 457899998 78999999999999999988877765 4556788899995
Q ss_pred CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (389)
.+++++.....|.|.|...... +++..+++|.....||.|+|+|++|++|+.|..+.+||+...-+.+.+....-
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw---- 232 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW---- 232 (313)
T ss_pred CCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC----
Confidence 6677776666799999999877 89999999999999999999999999999999999999998888888766554
Q ss_pred CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
+|..+.||.+|++||++++|-.|-|=++++|..+..+ .+.++...++|+|...+||-++.|.
T Consensus 233 -pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-----~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 233 -PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-----PCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred -ceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-----eccCCceeEEecCCCceeeEEecCC
Confidence 4999999999999999999999999999999999998 5788999999999999999888763
No 48
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.1e-37 Score=251.37 Aligned_cols=311 Identities=18% Similarity=0.241 Sum_probs=248.1
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe----eEEE-eeCCCcEEEEEECCCCcEEEEecCCC
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK----THAI-KLPCAWVMTCAFSPTGQSVACGGLDS 131 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg 131 (389)
......|++|+..|+++++.|.|-+|++|+.|.+|++||+..... ...+ ......|.+++|++.|..|++.+...
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 345567899999999999999999999999999999999865322 1122 23446799999999999999999999
Q ss_pred cEEEEeCCCCCC-----CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCC
Q 016458 132 VCSIFNLNSPTD-----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGH 205 (389)
Q Consensus 132 ~i~vw~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~ 205 (389)
..+|+|-+.... ....+.-....++|...++|.+|+|.....|++++.||++++||+...+ ....+......+.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 999999876331 1122223445678999999999999998999999999999999998753 3444444444566
Q ss_pred CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC--cceeEEeeecc--ceEEEEEecCCCEEEEEecCCeEEEEECCC
Q 016458 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (389)
.-++++++|++ ++++|++|+.||.|.+|+.+... .....-.+|.. .|+||.||++|++|++-+.|+++++||++.
T Consensus 317 Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 317 RVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred ccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 67899999999 88899999999999999976432 23344567877 899999999999999999999999999998
Q ss_pred CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
.+........ .....+-+.++|||+.++|++|+. .|.+.+||..+...+..+ ......|..+.|+|.-
T Consensus 396 ~kkpL~~~tg--L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki----~i~~aSvv~~~WhpkL 469 (641)
T KOG0772|consen 396 FKKPLNVRTG--LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI----DISTASVVRCLWHPKL 469 (641)
T ss_pred cccchhhhcC--CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe----cCCCceEEEEeecchh
Confidence 6644332221 222234688999999999999864 568999999999999888 4557789999999998
Q ss_pred CeEEeeeCCCeeEEeecceecc
Q 016458 356 SALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 356 ~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
+.|.+|+.||.++| +||..
T Consensus 470 NQi~~gsgdG~~~v---yYdp~ 488 (641)
T KOG0772|consen 470 NQIFAGSGDGTAHV---YYDPN 488 (641)
T ss_pred hheeeecCCCceEE---EECcc
Confidence 89999999999999 46654
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-37 Score=255.89 Aligned_cols=261 Identities=21% Similarity=0.328 Sum_probs=237.7
Q ss_pred CCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE
Q 016458 46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA 125 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 125 (389)
.+....|+-.+...++.+.-..-||.+..|-+..+++++|+.|..|+||+..+++.+..+..|...|.+++.+|...+++
T Consensus 34 nG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vL 113 (794)
T KOG0276|consen 34 NGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVL 113 (794)
T ss_pred cCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEE
Confidence 34456788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (389)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 205 (389)
+++.|-.|++||.+. .+.+.+++.+|...|.+++|+|...+.+++++-|++|++|.+.+..+..++ .+|
T Consensus 114 tsSDDm~iKlW~we~------~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl-----~gH 182 (794)
T KOG0276|consen 114 TSSDDMTIKLWDWEN------EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL-----EGH 182 (794)
T ss_pred ecCCccEEEEeeccC------ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee-----ecc
Confidence 999999999999986 667889999999999999999998899999999999999999999999998 799
Q ss_pred CCCeeEEEeeCC-CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458 206 TADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (389)
Q Consensus 206 ~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (389)
...|+++++.+. +..+|++|+.|.++++||..+. .+++++.+|...|..+.|+|.-.++++|+.||+++||...+.+.
T Consensus 183 ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 183 EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred ccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 999999999873 3459999999999999999987 89999999999999999999999999999999999999888777
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (389)
...+..... .+.+++-.+.++.+++|..+|.|.+
T Consensus 262 E~tLn~gle-----RvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 262 EKTLNYGLE-----RVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhhhhcCCc-----eEEEEeecCCCCeEEEeccCCcEEE
Confidence 666655444 3899998888888999888776543
No 50
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.5e-38 Score=241.64 Aligned_cols=285 Identities=22% Similarity=0.377 Sum_probs=250.4
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--------eCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--------LPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
|.+..+-|..|+|||++|++|+.||.|.+||..+|+....++ -+..+|.|+.|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 455678899999999999999999999999999987654433 356789999999999999999999999999
Q ss_pred eCCCCCCCCCCCcceeeec-ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458 137 NLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
.+.++. +.+.+. .|...|+|+.|+.++ ..+++++.|.++++--+.+|+++..+ .+|.+.|+...|.
T Consensus 291 ri~tG~-------ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEf-----rGHsSyvn~a~ft 357 (508)
T KOG0275|consen 291 RIETGQ-------CLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEF-----RGHSSYVNEATFT 357 (508)
T ss_pred EEecch-------HHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHh-----cCccccccceEEc
Confidence 999876 555554 899999999999998 67999999999999999999999999 8999999999999
Q ss_pred CCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--eccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (389)
+ +++.+++++.||+|++|+.++. .++.+++. ...+|+++..-| +...++++...++|++.++. |+.+..+....
T Consensus 358 ~-dG~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk 434 (508)
T KOG0275|consen 358 D-DGHHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK 434 (508)
T ss_pred C-CCCeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC
Confidence 8 9999999999999999999987 77777764 345788888877 56688899999999999976 66677665543
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeec
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLG 372 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~ 372 (389)
. ..+...+.+.+|.|.++++.+.|+.++.|.+.+|+...++ ..|+..|..++-+|..+.|++-+.||.+++
T Consensus 435 R--EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl----~VhEkdvIGl~HHPHqNllAsYsEDgllKL--- 505 (508)
T KOG0275|consen 435 R--EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL----PVHEKDVIGLTHHPHQNLLASYSEDGLLKL--- 505 (508)
T ss_pred c--cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee----ecccccccccccCcccchhhhhcccchhhh---
Confidence 2 2334677889999999999999999999999999999999 789999999999999999999999999999
Q ss_pred cee
Q 016458 373 FWR 375 (389)
Q Consensus 373 ~W~ 375 (389)
|.
T Consensus 506 -Wk 507 (508)
T KOG0275|consen 506 -WK 507 (508)
T ss_pred -cC
Confidence 95
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-37 Score=227.80 Aligned_cols=282 Identities=23% Similarity=0.348 Sum_probs=232.3
Q ss_pred EEEEEcC-CCCeEEEEe-------cCCcEEEEeCCCCCeeEEEee--CCCcEEEEEECCC-CcEEEEecCCCcEEEEeCC
Q 016458 71 YSLDWTS-ERNRIVSAS-------QDGRLIVWNALTSQKTHAIKL--PCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 71 ~~~~~~~-~~~~l~~~~-------~dg~v~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~ 139 (389)
.++.||| -.++||++. ..|++.|-++..++-+..... -...+..++|+++ .+.+++++.||.+++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5788999 233444432 468899999865554444432 3456999999995 4677888999999999966
Q ss_pred CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
.+. .++..++.|...|.++.|++.....+++++.|++|++|+...+..+.++ .+|...|....|+|..+
T Consensus 92 ~~s------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-----~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 92 MPS------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-----NGHNSCIYQAAFSPHIP 160 (311)
T ss_pred CCC------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-----cCCccEEEEEecCCCCC
Confidence 533 2677889999999999999988788999999999999999999999998 79999999999999999
Q ss_pred cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCC
Q 016458 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 298 (389)
+++++++.|+.+++||++..++.+. +..|...+.++.|+. +...+++|+.|+.|++||++..+...... ..+..
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL----~gh~~ 235 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL----NGHGL 235 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee----cCCce
Confidence 9999999999999999999855554 889999999999998 77789999999999999999865432222 23344
Q ss_pred CeeEEEeCCCC-CEEEEEecCCcEEEEEcccceE-EEeecCcCCCCCCCeeEEEECC-CCCeEEeeeCCCeeEEeeccee
Q 016458 299 HVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVNLGFWR 375 (389)
Q Consensus 299 ~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~W~ 375 (389)
.|..+.|||.. ..|++++.|-+++|||...... +.+. ..|..-|..+.|++ ++.++|+++.|+.++| |+
T Consensus 236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~----~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V----w~ 307 (311)
T KOG0277|consen 236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV----DHHTEFVCGLDWSLFDPGQVASTGWDELLYV----WN 307 (311)
T ss_pred EEEEEecCcchhhHhhhccccceEEecccccchhhhhhh----hccceEEeccccccccCceeeecccccceee----ec
Confidence 69999999965 4889999999999999885443 3334 67889999999998 7789999999999999 98
Q ss_pred c
Q 016458 376 V 376 (389)
Q Consensus 376 ~ 376 (389)
.
T Consensus 308 p 308 (311)
T KOG0277|consen 308 P 308 (311)
T ss_pred c
Confidence 4
No 52
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-36 Score=254.86 Aligned_cols=317 Identities=21% Similarity=0.310 Sum_probs=260.0
Q ss_pred CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458 45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (389)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (389)
.++....|+........+|.||+.+|+++.|+..|.+|++||.|+.|.+||+-...-...+.+|...|+..-|....+++
T Consensus 85 aDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~l 164 (888)
T KOG0306|consen 85 ADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFL 164 (888)
T ss_pred cCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEE
Confidence 34566677777667888999999999999999999999999999999999998877788888888888887777777777
Q ss_pred EEecCCCcEEEEeCCCCC--------------------------------------------------------------
Q 016458 125 ACGGLDSVCSIFNLNSPT-------------------------------------------------------------- 142 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~-------------------------------------------------------------- 142 (389)
++.+.|+.|++||+++..
T Consensus 165 vS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk 244 (888)
T KOG0306|consen 165 VSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSK 244 (888)
T ss_pred EEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccC
Confidence 777788888888877643
Q ss_pred --------------------------------------------------------------------------------
Q 016458 143 -------------------------------------------------------------------------------- 142 (389)
Q Consensus 143 -------------------------------------------------------------------------------- 142 (389)
T Consensus 245 ~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kik 324 (888)
T KOG0306|consen 245 GREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIK 324 (888)
T ss_pred CceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhhee
Confidence
Q ss_pred ------CCCCC---------------------------CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 143 ------DKDGN---------------------------LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 143 ------~~~~~---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
..... ......+.+|...|.+++++.+. .++..+..+.+++|+..
T Consensus 325 s~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga~~SikiWn~~ 402 (888)
T KOG0306|consen 325 SFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGAGESIKIWNRD 402 (888)
T ss_pred EEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeeecCCCcEEEEEcc
Confidence 00000 00012355788899999999865 45556667899999999
Q ss_pred CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe
Q 016458 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 269 (389)
+.+++.++. ...+.+..|.| +++++++|...|.+.+||+.+. ..+....+|.+.|..++.+||+..+++|+
T Consensus 403 t~kciRTi~-------~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~s 473 (888)
T KOG0306|consen 403 TLKCIRTIT-------CGYILASKFVP-GDRYIVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNKGFVTGS 473 (888)
T ss_pred CcceeEEec-------cccEEEEEecC-CCceEEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCCceEEec
Confidence 999999982 23789999999 8899999999999999999987 78888889999999999999999999999
Q ss_pred cCCeEEEEECCC-----CceeeEeecc--CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458 270 DDGTCRLFDIRT-----GHQLQVYYQQ--HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (389)
Q Consensus 270 ~dg~i~i~d~~~-----~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (389)
.|.+|++||..- +.....+... ..-.-...|.++.+||||++|+++--|+++.||-+.+.+....+ .+|
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL----YGH 549 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL----YGH 549 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee----ccc
Confidence 999999999642 1111111111 11112234999999999999999999999999999999999998 899
Q ss_pred CCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 343 EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 343 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
.-||.||..+||++.++|||.|..|+| |-++-|.
T Consensus 550 kLPV~smDIS~DSklivTgSADKnVKi----WGLdFGD 583 (888)
T KOG0306|consen 550 KLPVLSMDISPDSKLIVTGSADKNVKI----WGLDFGD 583 (888)
T ss_pred ccceeEEeccCCcCeEEeccCCCceEE----eccccch
Confidence 999999999999999999999999999 9988764
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=4e-36 Score=230.18 Aligned_cols=300 Identities=20% Similarity=0.298 Sum_probs=249.5
Q ss_pred eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC------------C------CeeEEEeeCCCcEEEEEECCCCc
Q 016458 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT------------S------QKTHAIKLPCAWVMTCAFSPTGQ 122 (389)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 122 (389)
..+..|++++.+.+|+|||.++|||+.|..|+|.|++. + -.++++-.|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 35678999999999999999999999999999999851 1 23556667889999999999999
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc
Q 016458 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 202 (389)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 202 (389)
.|++|+.|++|++||+.....+ ..........+|.++.|+|.| .+++.|.....+++||+++-++.....+.
T Consensus 186 ILiS~srD~tvKlFDfsK~saK-----rA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd-- 257 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAK-----RAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPD-- 257 (430)
T ss_pred eEEeccCCCeEEEEecccHHHH-----HHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcc--
Confidence 9999999999999999864311 111122345689999999998 68999999999999999998887665433
Q ss_pred CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-eecc-ceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458 203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (389)
..|.+.|+++.+++ .+++.++++.||.|++||--+. +++.++. +|.+ .|.+..|..+++++++.+.|..+++|.+.
T Consensus 258 ~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 258 DQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred cccccceeEEEecC-CccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 68999999999998 8999999999999999998776 6666654 4654 68999999999999999999999999999
Q ss_pred CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEE
Q 016458 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 359 (389)
+++.+..+...........-+...|+....|++.-.+ .+.+.-||.++......+. .+|.+.+..+.-||.+.-++
T Consensus 336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s---lgHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS---LGHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc---cCCCCCceEEEeCCCCCcee
Confidence 9999999877543333333566778888777776543 5689999999887776654 69999999999999999999
Q ss_pred eeeCCCeeEEeecceecc
Q 016458 360 TGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 360 ~~~~dg~i~i~~~~W~~~ 377 (389)
+|+.|-.+++ |--.
T Consensus 413 TcsdD~raRF----Wyrr 426 (430)
T KOG0640|consen 413 TCSDDFRARF----WYRR 426 (430)
T ss_pred eecccceeee----eeec
Confidence 9999999999 8643
No 54
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.8e-36 Score=240.21 Aligned_cols=286 Identities=27% Similarity=0.427 Sum_probs=243.0
Q ss_pred eeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeE-E----------------E-eeCCCcEEEEEECCCC
Q 016458 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH-A----------------I-KLPCAWVMTCAFSPTG 121 (389)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~-~----------------~-~~~~~~v~~~~~~~~~ 121 (389)
.+.+..|.-+|.|++++|++++.++++.||+|.-|++.+++... . - ..|...+.+++.+++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 67888999999999999999999999999999999998776431 1 0 2566789999999999
Q ss_pred cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc
Q 016458 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (389)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 201 (389)
++|++|+.|..|.||+.++.. ....+.+|.+.|.+++|-... ..+++++.|+.|++|++.....+.++
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-------hv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetl---- 282 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-------HVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETL---- 282 (479)
T ss_pred cEEEecCCCceEEEecCcccc-------hhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHH----
Confidence 999999999999999999865 567789999999999998764 78999999999999999998888888
Q ss_pred cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC
Q 016458 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (389)
Q Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (389)
.+|.+.|..+.... ..+.+-+|+.|.++++|++.. .....+.++.+.+.|++|-. ...+++|+.+|.|.+|++..
T Consensus 283 -yGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 283 -YGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred -hCCccceeeechhc-ccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecc
Confidence 79999999999986 777777888999999999953 45567788999999999984 46799999999999999999
Q ss_pred CceeeEeeccCCCCCC-------CCeeEEEeCCCCCEEEEEecCCcEEEEEcccc----eEEEeecCcCCCCCCCeeEEE
Q 016458 282 GHQLQVYYQQHGENEI-------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGSLQNSHEGRITCLG 350 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~~v~~~~ 350 (389)
.+++......++.... .+|++++..|...++++|+.+|.|++|-+..+ .++..+ .-.+.|++++
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l-----s~~GfVNsl~ 432 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL-----SLVGFVNSLA 432 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeec-----ccccEEEEEE
Confidence 9999888776654333 38999999999999999999999999999876 333333 3668899999
Q ss_pred ECCCCCeEEeee-CCCee
Q 016458 351 LSADGSALCTGS-WDTNL 367 (389)
Q Consensus 351 ~~~~~~~l~~~~-~dg~i 367 (389)
|+++|+.+++|. ....+
T Consensus 433 f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 433 FSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred EccCCCEEEEeccccccc
Confidence 999999666553 33333
No 55
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7e-36 Score=261.39 Aligned_cols=265 Identities=26% Similarity=0.415 Sum_probs=229.7
Q ss_pred cCCCCCcccCCCcce--eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeC-CCCCeeEEEeeCCCcEEEEEECCC
Q 016458 44 SQGRAPVSFGPTDLV--CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA-LTSQKTHAIKLPCAWVMTCAFSPT 120 (389)
Q Consensus 44 ~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~-~~~~~~~~~~~~~~~v~~~~~~~~ 120 (389)
........|...... ..+.+.+|...|++++|+|+++++++++.|++|+|||+ ..+..+.++.+|...|++++|+|+
T Consensus 178 ~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~ 257 (456)
T KOG0266|consen 178 SSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD 257 (456)
T ss_pred cCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC
Confidence 345556667776666 78888999999999999999999999999999999999 556889999999999999999999
Q ss_pred CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe--eEEEec
Q 016458 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--RTSVFG 198 (389)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~ 198 (389)
++++++|+.|++|+|||+.+++ +...+.+|.+.|++++|++++ +++++++.|+.|++||+.++. +...+
T Consensus 258 g~~i~Sgs~D~tvriWd~~~~~-------~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~- 328 (456)
T KOG0266|consen 258 GNLLVSGSDDGTVRIWDVRTGE-------CVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLL- 328 (456)
T ss_pred CCEEEEecCCCcEEEEeccCCe-------EEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecc-
Confidence 9999999999999999999855 789999999999999999998 789999999999999999998 44554
Q ss_pred CcccCCCCC--CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccc---eEEEEEecCCCEEEEEecCCe
Q 016458 199 GEFQSGHTA--DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD---VNTVKFFPDGNRFGTGSDDGT 273 (389)
Q Consensus 199 ~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~ 273 (389)
..+.. .++++.|+| ++.++++++.|+.+++||++.. .....+.+|... +.+...++.+.++++|+.|+.
T Consensus 329 ----~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~ 402 (456)
T KOG0266|consen 329 ----SGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS 402 (456)
T ss_pred ----cCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCC-cceeeecccCCcceeEecccccCCCCeEEEEeCCce
Confidence 23333 699999999 9999999999999999999988 778888888775 334455779999999999999
Q ss_pred EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe--cCCcEEEEEcc
Q 016458 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY--SNGDCYVWDTL 327 (389)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~ 327 (389)
|++||+.++..+..+..+. ...+..+.++|..+++++++ .|+.+++|...
T Consensus 403 v~~~~~~s~~~~~~l~~h~----~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 403 VYVWDSSSGGILQRLEGHS----KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEEeCCccchhhhhcCCC----CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999987777765542 33589999999999999988 68889999753
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=249.44 Aligned_cols=275 Identities=25% Similarity=0.432 Sum_probs=239.3
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcce
Q 016458 72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS 151 (389)
Q Consensus 72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 151 (389)
=++|+. .+.||+|.. ..|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||....+ ..
T Consensus 182 lldWss-~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k-------~~ 252 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK-------KT 252 (484)
T ss_pred Hhhccc-CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc-------cc
Confidence 366773 447777765 479999999998777777768889999999999999999999999999998754 45
Q ss_pred eeecc-cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEE-ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458 152 RMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (389)
Q Consensus 152 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (389)
..+.+ |...|.+++|.. ..+.+|+.|+.|..+|++..+.... + .+|...|..+.|++ ++.++++|+.|+
T Consensus 253 ~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~-----~~H~qeVCgLkws~-d~~~lASGgnDN 323 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTL-----QGHRQEVCGLKWSP-DGNQLASGGNDN 323 (484)
T ss_pred ccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhh-----hcccceeeeeEECC-CCCeeccCCCcc
Confidence 55666 999999999994 5799999999999999998766555 3 78999999999999 999999999999
Q ss_pred ceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEe--cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458 230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (389)
Q Consensus 230 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (389)
.+.|||.... .+...+..|.+.|.+++|+| ...+||+|+ .|+.|++||..++..+....... .|+.+.|+
T Consensus 324 ~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs------QVcsL~Ws 396 (484)
T KOG0305|consen 324 VVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS------QVCSLIWS 396 (484)
T ss_pred ceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC------ceeeEEEc
Confidence 9999999766 78889999999999999999 667888876 69999999999998887765533 49999999
Q ss_pred CCCCEEEE--EecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 307 ISGRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 307 ~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
+..+-|++ |..++.|.||+..+.+.+..+ .+|...|..++++|||..+++|+.|.++++ |++-+.
T Consensus 397 k~~kEi~sthG~s~n~i~lw~~ps~~~~~~l----~gH~~RVl~la~SPdg~~i~t~a~DETlrf----w~~f~~ 463 (484)
T KOG0305|consen 397 KKYKELLSTHGYSENQITLWKYPSMKLVAEL----LGHTSRVLYLALSPDGETIVTGAADETLRF----WNLFDE 463 (484)
T ss_pred CCCCEEEEecCCCCCcEEEEeccccceeeee----cCCcceeEEEEECCCCCEEEEecccCcEEe----ccccCC
Confidence 99876665 556789999999999999888 899999999999999999999999999999 888763
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-36 Score=258.69 Aligned_cols=304 Identities=19% Similarity=0.317 Sum_probs=223.5
Q ss_pred cceeeeecc-cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC----------cEEEEEECC---CC
Q 016458 56 DLVCCRTLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA----------WVMTCAFSP---TG 121 (389)
Q Consensus 56 ~~~~~~~l~-~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~----------~v~~~~~~~---~~ 121 (389)
.+...+.+. +|.++|.++.||+||+|||+|+.||.|+||.+...+....-....+ .+..+.-++ .+
T Consensus 255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 345556677 8999999999999999999999999999999865333111110000 000000111 00
Q ss_pred c--EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458 122 Q--SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (389)
Q Consensus 122 ~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 199 (389)
+ ..-.+..... .+.+.... .....+...+.+|.+.|.++.|+.+ ++|++++.|.+|++|++....++..|
T Consensus 335 ~~s~~~~~~~s~~-~~~p~~~f---~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F-- 406 (712)
T KOG0283|consen 335 RTSSSRKGSQSPC-VLLPLKAF---VFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVF-- 406 (712)
T ss_pred cccccccccCCcc-ccCCCccc---cccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEE--
Confidence 1 1111111122 12221111 1122356778999999999999996 48999999999999999999999998
Q ss_pred cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEEC
Q 016458 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279 (389)
Q Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 279 (389)
.|.+.|+|++|+|.+.++|++|+-||.|+||++... .+..+..-..-|++++|.|||++.++|+.+|.+++|+.
T Consensus 407 ----~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t 480 (712)
T KOG0283|consen 407 ----SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDT 480 (712)
T ss_pred ----ecCCeeEEEEecccCCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEc
Confidence 799999999999999999999999999999999854 44445555578999999999999999999999999999
Q ss_pred CCCceeeEeeccCCC---CCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 280 RTGHQLQVYYQQHGE---NEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
...+........... .....|+.+.|.|... .+++.+.|..|+|||.+...++..++..... ..-....|+.||
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--~SQ~~Asfs~Dg 558 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--SSQISASFSSDG 558 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC--CcceeeeEccCC
Confidence 877665554332221 1122599999997544 5777889999999999888888888532222 234567899999
Q ss_pred CeEEeeeCCCeeEEeecceecccC
Q 016458 356 SALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 356 ~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
++|++++.|..|+| |++..-
T Consensus 559 k~IVs~seDs~VYi----W~~~~~ 578 (712)
T KOG0283|consen 559 KHIVSASEDSWVYI----WKNDSF 578 (712)
T ss_pred CEEEEeecCceEEE----EeCCCC
Confidence 99999999999999 998543
No 58
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=3.5e-35 Score=234.46 Aligned_cols=281 Identities=20% Similarity=0.333 Sum_probs=248.6
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
..|+++...|..+.++||+.|..+.++|..+++.+..+++|...|+.+.++|+...+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----
Confidence 368899999987899999999999999999999999999999999999999999999999999999999987644
Q ss_pred CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (389)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (389)
.......|..+|+.+..+|.| .||++++.|++..+.|++++..+..... ....-.+++.+|+| ++.+|.+|+.
T Consensus 295 --~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~---~~s~v~~ts~~fHp-DgLifgtgt~ 367 (506)
T KOG0289|consen 295 --EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSD---ETSDVEYTSAAFHP-DGLIFGTGTP 367 (506)
T ss_pred --CccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEee---ccccceeEEeeEcC-CceEEeccCC
Confidence 455677899999999999998 7999999999999999999998887632 12345689999999 9999999999
Q ss_pred CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458 228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (389)
Q Consensus 228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (389)
||.|++||+.+. ..+..|.+|.++|..++|+.+|-+|++++.|+.|++||+|..+....+...... .+.++.|.+
T Consensus 368 d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~----~v~s~~fD~ 442 (506)
T KOG0289|consen 368 DGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK----EVNSLSFDQ 442 (506)
T ss_pred CceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc----cceeEEEcC
Confidence 999999999988 688899999999999999999999999999999999999998877777664432 589999999
Q ss_pred CCCEEEEEecCCcEEEEEcc--cceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 308 SGRLLFAGYSNGDCYVWDTL--LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 308 ~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.|.+|+.++.+=.|++++-. +...+..+ ..|.+..+++.|..+.++++++|.|..+++
T Consensus 443 SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~----~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 443 SGTYLGIAGSDLQVYICKKKTKSWTEIKEL----ADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred CCCeEEeecceeEEEEEecccccceeeehh----hhcccccceeeecccceEEeeccchhheEE
Confidence 99999999777666666532 45566666 678889999999999999999999999988
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3e-34 Score=269.61 Aligned_cols=270 Identities=17% Similarity=0.269 Sum_probs=218.0
Q ss_pred CCcEEEEeCCCCCeeEEE-----eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC-cceeeecccccce
Q 016458 88 DGRLIVWNALTSQKTHAI-----KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL-PVSRMLSGHKGYV 161 (389)
Q Consensus 88 dg~v~iw~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~v 161 (389)
+|.+++|+..+......+ ..|...|.+++|+|+++++++|+.|+.|+||++.......... .....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 677888887765544333 3477889999999999999999999999999986421111111 1112222 34679
Q ss_pred EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc
Q 016458 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241 (389)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 241 (389)
.+++|++....+|++++.||.|++||+.+++.+..+ ..|...|.+++|+|.++.+|++|+.||.|++||+++. .
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-----~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~ 609 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-----KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-V 609 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-----cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-c
Confidence 999999875578999999999999999999888887 7899999999999867889999999999999999876 6
Q ss_pred ceeEEeeeccceEEEEEe-cCCCEEEEEecCCeEEEEECCCCce-eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458 242 AVRTFHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (389)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (389)
.+..+.. ...+.++.|+ +++.+|++|+.||.|++||++.... ...+.. +...|.++.|. ++.+|++++.|+
T Consensus 610 ~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-----h~~~V~~v~f~-~~~~lvs~s~D~ 682 (793)
T PLN00181 610 SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-----HSKTVSYVRFV-DSSTLVSSSTDN 682 (793)
T ss_pred EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC-----CCCCEEEEEEe-CCCEEEEEECCC
Confidence 6666664 4678999995 4799999999999999999987653 333332 33459999997 778999999999
Q ss_pred cEEEEEcccc------eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 320 DCYVWDTLLA------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 320 ~i~i~d~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
.|++||+..+ ..+..+ .+|...+.+++|++++.+|++|+.||.|++ |+...+
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~----~gh~~~i~~v~~s~~~~~lasgs~D~~v~i----w~~~~~ 740 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSF----MGHTNVKNFVGLSVSDGYIATGSETNEVFV----YHKAFP 740 (793)
T ss_pred EEEEEeCCCCccccCCcceEEE----cCCCCCeeEEEEcCCCCEEEEEeCCCEEEE----EECCCC
Confidence 9999999743 456666 789999999999999999999999999999 997654
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.5e-35 Score=232.62 Aligned_cols=282 Identities=22% Similarity=0.330 Sum_probs=233.5
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC---cEEEEecCCCcEEEEeCCCC
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG---QSVACGGLDSVCSIFNLNSP 141 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vw~~~~~ 141 (389)
-|.+-|.++... ++.+++|+.||.+++||. .|+....+.+|.+++.+++|.-.+ ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488889999887 569999999999999994 689999999999999988885433 35999999999999999875
Q ss_pred CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-------------------------eeEEE
Q 016458 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------------------------LRTSV 196 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------------------~~~~~ 196 (389)
... ........+|...|.++...+++ ..+++|+.|.+|.+|+..+. .++..
T Consensus 180 ~~~---~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 180 ENK---VKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred hhh---hhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 532 22334445999999999999998 78999999999999993321 12222
Q ss_pred ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEE
Q 016458 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL 276 (389)
Q Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 276 (389)
+ .+|..+|.++.|++ ...+++++.|.+|+.||+.++ .....+. .+..+.++.++|..++|++|+.|..|++
T Consensus 256 l-----~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg-~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 256 L-----EGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETG-GLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred e-----cccccceeeEEEcC--CCceEeecccceEEEEEeecc-cceeeee-cCcceeEeecccccceeeecCCCCceee
Confidence 2 68999999999996 668899999999999999988 5555554 3567999999999999999999999999
Q ss_pred EECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccce-EEEeecCcCCCCCCCeeEEEECCC
Q 016458 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSAD 354 (389)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~ 354 (389)
||.+++........ ...|...|.++.|+|... .|++|+.|+++++||+++.+ ++..+ .+|...|.++.|. +
T Consensus 327 ~DPR~~~gs~v~~s--~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI----~~h~DKvl~vdW~-~ 399 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQS--LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI----AGHNDKVLSVDWN-E 399 (423)
T ss_pred cCCCCCCCceeEEe--eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee----ccCCceEEEEecc-C
Confidence 99998643322211 234455899999999765 67889999999999999877 88888 8999999999998 5
Q ss_pred CCeEEeeeCCCeeEE
Q 016458 355 GSALCTGSWDTNLKV 369 (389)
Q Consensus 355 ~~~l~~~~~dg~i~i 369 (389)
+.++++||.|.+++|
T Consensus 400 ~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 400 GGLIVSGGADNKLRI 414 (423)
T ss_pred CceEEeccCcceEEE
Confidence 668999999999999
No 61
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.9e-37 Score=240.18 Aligned_cols=288 Identities=18% Similarity=0.260 Sum_probs=237.2
Q ss_pred eeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458 59 CCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (389)
.+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+...+..|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 345789999999999999976 7899999999999999999999999999999999999986 7788899999999999
Q ss_pred CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 217 (389)
++.+ ...++.+ .+.+..+.-+..+ ..++++|. .|.|||.....++..+ .-..+.|.++.|+|.
T Consensus 136 ~~~~--------p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~sm-----swG~Dti~svkfNpv 198 (433)
T KOG0268|consen 136 IDGP--------PLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSM-----SWGADSISSVKFNPV 198 (433)
T ss_pred ccCC--------cceeeec-ccccccccccccc-ccccccCc--eeeecccccCCcccee-----ecCCCceeEEecCCC
Confidence 8862 2333332 3455566655554 56887776 4899999988888888 566778999999998
Q ss_pred CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (389)
...+|+++..|+.|.+||++.. .++.... ....-+.|+|+|++-.+++|+.|..++.||++.......... .+.
T Consensus 199 ETsILas~~sDrsIvLyD~R~~-~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~----dhv 272 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQA-SPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK----DHV 272 (433)
T ss_pred cchheeeeccCCceEEEecccC-Cccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhc----ccc
Confidence 8899999999999999999998 5655544 234567899999888899999999999999987554433322 334
Q ss_pred CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
+.|.++.|||.|+-+++|+.|.+|+||..+.+....... ......|.|+.||.|.+|+++||.|+.|++ |.-.
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh---tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl----Wka~ 345 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH---TKRMQHVFCVKYSMDSKYIISGSDDGNVRL----WKAK 345 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh---HhhhheeeEEEEeccccEEEecCCCcceee----eecc
Confidence 469999999999999999999999999998776554442 233457999999999999999999999999 9876
Q ss_pred c
Q 016458 378 E 378 (389)
Q Consensus 378 ~ 378 (389)
.
T Consensus 346 A 346 (433)
T KOG0268|consen 346 A 346 (433)
T ss_pred h
Confidence 4
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.1e-35 Score=229.82 Aligned_cols=267 Identities=18% Similarity=0.312 Sum_probs=226.0
Q ss_pred CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458 45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (389)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (389)
.+.....|+..+......+.+|++.|+|+.|+.+|.+||||..+|.|+||...++.....+......+.-+.|+|.+..|
T Consensus 84 gDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~il 163 (399)
T KOG0296|consen 84 GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHIL 163 (399)
T ss_pred CCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEE
Confidence 34455678888888899999999999999999999999999999999999999999998888777789999999999999
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc---
Q 016458 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF--- 201 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 201 (389)
++|+.||.+-+|.+.+.. ..+.+.+|+.++++-.|.|+| +.++++..||+|++||+.++++...+...-
T Consensus 164 lAG~~DGsvWmw~ip~~~-------~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~ 235 (399)
T KOG0296|consen 164 LAGSTDGSVWMWQIPSQA-------LCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLE 235 (399)
T ss_pred EeecCCCcEEEEECCCcc-------eeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCc
Confidence 999999999999998743 678899999999999999998 789999999999999999998777664100
Q ss_pred -------------------------------------------cCCCCCCeeEEEeeCC--CCcEEEEeeCCCceEEEeC
Q 016458 202 -------------------------------------------QSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDT 236 (389)
Q Consensus 202 -------------------------------------------~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~ 236 (389)
...+...+.++.+.|. .-.+.++|+-||+|.|||+
T Consensus 236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~ 315 (399)
T KOG0296|consen 236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL 315 (399)
T ss_pred CCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec
Confidence 0011112222222221 2346788999999999999
Q ss_pred CCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
... .++....|..+|..+.|.+ ..+|++++.+|.|+.||.++|+.+..+..+... |.+++++|+++++++++
T Consensus 316 a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-----Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 316 AAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG-----ILDFALSPQKRLVVTVS 387 (399)
T ss_pred ccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh-----eeEEEEcCCCcEEEEec
Confidence 854 4556667999999999998 789999999999999999999999999776654 99999999999999999
Q ss_pred cCCcEEEEEcc
Q 016458 317 SNGDCYVWDTL 327 (389)
Q Consensus 317 ~dg~i~i~d~~ 327 (389)
.|+..+||+..
T Consensus 388 ~D~~a~VF~v~ 398 (399)
T KOG0296|consen 388 DDNTALVFEVP 398 (399)
T ss_pred CCCeEEEEecC
Confidence 99999999864
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-36 Score=224.17 Aligned_cols=256 Identities=21% Similarity=0.390 Sum_probs=216.9
Q ss_pred CCcceeeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCC-CCeeEEEeeCCCcEEEEEECC-CCcEEEEecCC
Q 016458 54 PTDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLD 130 (389)
Q Consensus 54 ~~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 130 (389)
+.....+..+. -.+.+..++|++.. +.+++++.||++++||... ..++..++.|...|.++.|++ ++..+++++.|
T Consensus 48 ~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD 126 (311)
T KOG0277|consen 48 PKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD 126 (311)
T ss_pred CCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccC
Confidence 44555555554 45679999999954 6889999999999999643 457888899999999999998 56678888999
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 210 (389)
++|++|+...+. ...++.+|...|...+|+|..++++++++.||++++||++.......+ ..|...+.
T Consensus 127 ~TiKLW~~~r~~-------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i-----~ah~~Eil 194 (311)
T KOG0277|consen 127 GTIKLWDPNRPN-------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI-----EAHNSEIL 194 (311)
T ss_pred CceEeecCCCCc-------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE-----EeccceeE
Confidence 999999998755 677899999999999999999999999999999999999876555556 68889999
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (389)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (389)
++.|+..+.+++++|+.|+.|+.||+++...++..+.+|.-.|+.+.||| ....|++++.|-+++|||...+.......
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~ 274 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV 274 (311)
T ss_pred eecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh
Confidence 99999989999999999999999999999899999999999999999999 45688999999999999988554443333
Q ss_pred ccCCCCCCCCeeEEEeCC-CCCEEEEEecCCcEEEEEc
Q 016458 290 QQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 326 (389)
.++. .-+..+.|++ ++.++|..+.|+.++||+.
T Consensus 275 ~~Ht----EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 275 DHHT----EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccc----eEEeccccccccCceeeecccccceeeecc
Confidence 3222 2488889987 4569999999999999983
No 64
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=226.19 Aligned_cols=262 Identities=25% Similarity=0.368 Sum_probs=220.6
Q ss_pred eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC
Q 016458 101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180 (389)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 180 (389)
++..+.+|.+.|..+.|+|+|..|++|+.|..|.+|++.... .-...+++|++.|..+.|.+++ +.+++++.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------eN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtD 111 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC------ENFWVLKGHSGAVMELHGMRDG-SHILSCGTD 111 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc------cceeeeccccceeEeeeeccCC-CEEEEecCC
Confidence 344567899999999999999999999999999999977533 2345667999999999999998 789999999
Q ss_pred CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec
Q 016458 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260 (389)
Q Consensus 181 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (389)
.+|+.||.++++....+ ..|..-+.++.....+..++.+++.|+++++||+|+. ..++.+. ....++++.|..
T Consensus 112 k~v~~wD~~tG~~~rk~-----k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d 184 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRKH-----KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKD 184 (338)
T ss_pred ceEEEEecccceeeehh-----ccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEecc
Confidence 99999999999999998 7999999999977666778889999999999999976 5555553 456789999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc----eEEEeec
Q 016458 261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLG 336 (389)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~ 336 (389)
++..+.+|+-|+.|++||++.......+..+.. +|+.+..+|+|.++.+-+.|..+++||++.. +.+..+.
T Consensus 185 ~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-----tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~ 259 (338)
T KOG0265|consen 185 TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-----TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ 259 (338)
T ss_pred cccceeeccccCceeeeccccCcceEEeecccC-----ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee
Confidence 999999999999999999999988888866554 4999999999999999999999999998742 3355553
Q ss_pred CcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc-CcccCcc
Q 016458 337 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE-GALSPWG 385 (389)
Q Consensus 337 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~-~~~~~~~ 385 (389)
......+......+|+|++.++.+|+.|..+++ ||... +-+..|.
T Consensus 260 g~~hnfeknlL~cswsp~~~~i~ags~dr~vyv----wd~~~r~~lyklp 305 (338)
T KOG0265|consen 260 GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYV----WDTTSRRILYKLP 305 (338)
T ss_pred cchhhhhhhcceeeccCCCCccccccccceEEE----eecccccEEEEcC
Confidence 322223345567799999999999999999999 99987 4444443
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-35 Score=218.46 Aligned_cols=251 Identities=24% Similarity=0.369 Sum_probs=223.5
Q ss_pred eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC
Q 016458 101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180 (389)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 180 (389)
....+..+.++|..+.|+-+|++.++++.|.+|++|+...+. +++++.+|...|..++.+.++ ..|++|+.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~Dn-skf~s~GgD 80 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSSDN-SKFASCGGD 80 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccccc-cccccCCCC
Confidence 455677888999999999999999999999999999998765 889999999999999999997 679999999
Q ss_pred CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC-CcceeEEeeeccceEEEEEe
Q 016458 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHEGDVNTVKFF 259 (389)
Q Consensus 181 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~ 259 (389)
..+.+||+.+|+....+ .+|...|+.+.|+. +...+++|+.|..+++||.++. .++++.+......|.++...
T Consensus 81 k~v~vwDV~TGkv~Rr~-----rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF-----RGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred ceEEEEEcccCeeeeec-----ccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence 99999999999999999 89999999999997 8889999999999999999875 36778888788889999885
Q ss_pred cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC
Q 016458 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (389)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (389)
+..|++|+.||+++.||++.|.....+.. .+|++++|+++++..++++.|+.+++.|-.+|+.+...
T Consensus 155 --~heIvaGS~DGtvRtydiR~G~l~sDy~g-------~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY---- 221 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRKGTLSSDYFG-------HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY---- 221 (307)
T ss_pred --ccEEEeeccCCcEEEEEeecceeehhhcC-------CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh----
Confidence 66899999999999999999877655433 25999999999999999999999999999999999998
Q ss_pred CCCCCCe--eEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 340 NSHEGRI--TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 340 ~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
.+|.+.= ...+++.....+++|+.||.|.+ ||+.++++.
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~----wdLvd~~~~ 262 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF----WDLVDETQI 262 (307)
T ss_pred cccccceeeeeeeecccceeEEeccCCceEEE----EEeccceee
Confidence 6776543 44567777889999999999999 999988764
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=5.3e-35 Score=254.79 Aligned_cols=297 Identities=25% Similarity=0.424 Sum_probs=257.3
Q ss_pred CCcccCCCcceeeeeccc-ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE-EeeCCCcEEEEEECCCCcEEE
Q 016458 48 APVSFGPTDLVCCRTLQG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA-IKLPCAWVMTCAFSPTGQSVA 125 (389)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~ 125 (389)
....|.+........+.+ |...+.+..|. ..++++++.|.+|++||..++..+.. +.+|.+.|.++++..-+.+++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 188 LSKNWRKLFRRGYKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred ccccccccccccceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEE
Confidence 334455544444455555 56689999998 44899999999999999999999988 999999999999988889999
Q ss_pred EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (389)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 205 (389)
+|+.|.++++||..++. +...+.+|.+.+.++...+ ..+++|+.|.+|++|++.++..+..+ .+|
T Consensus 266 sgS~D~t~rvWd~~sg~-------C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~-----~~h 330 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGE-------CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLL-----RGH 330 (537)
T ss_pred EEecCCcEEeEecCCCc-------EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEe-----ccc
Confidence 99999999999998876 8899999999999998876 56888999999999999999999998 669
Q ss_pred CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC-ce
Q 016458 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG-HQ 284 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~ 284 (389)
..+|.++..+ +.++++|+.|++|.+||+.+. +++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. ++
T Consensus 331 ~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c 405 (537)
T KOG0274|consen 331 TGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC 405 (537)
T ss_pred cccEEEEEec---CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh
Confidence 9999999986 679999999999999999977 999999999999999988654 89999999999999999998 77
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCC-CCCCeeEEEECCCCCeEEeeeC
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS-HEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
+..+..+... +..+. ..+++|++++.|+.|++||..+++.+..+ .+ |.+.|+.+++. ...+++++.
T Consensus 406 ~~tl~~h~~~-----v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~----~~~~~~~v~~l~~~--~~~il~s~~ 472 (537)
T KOG0274|consen 406 IHTLQGHTSL-----VSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTL----EGRHVGGVSALALG--KEEILCSSD 472 (537)
T ss_pred hhhhcCCccc-----ccccc--cccceeEeccccccEEEeecccCceeeee----ccCCcccEEEeecC--cceEEEEec
Confidence 7777654442 44443 46789999999999999999999999999 45 67889999886 457899999
Q ss_pred CCeeEEeecceecccCcccC
Q 016458 364 DTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 364 dg~i~i~~~~W~~~~~~~~~ 383 (389)
||.+++ ||+.++++..
T Consensus 473 ~~~~~l----~dl~~~~~~~ 488 (537)
T KOG0274|consen 473 DGSVKL----WDLRSGTLIR 488 (537)
T ss_pred CCeeEE----EecccCchhh
Confidence 999999 9999998764
No 67
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=8.2e-34 Score=247.18 Aligned_cols=274 Identities=14% Similarity=0.152 Sum_probs=213.2
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee-------------EEEeeCCCcEEEEEECC-CCcEEEEecCCCcE
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-------------HAIKLPCAWVMTCAFSP-TGQSVACGGLDSVC 133 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 133 (389)
..|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.|+.|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34556666667666677777666667765433221 24667899999999999 88999999999999
Q ss_pred EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
++||+...............+.+|...|.+++|+|++.++|++++.|+.|++||+.++.....+ ..|...|.+++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-----~~h~~~V~sla 175 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI-----KCHSDQITSLE 175 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-----cCCCCceEEEE
Confidence 9999976432111223456788999999999999987679999999999999999999888877 67889999999
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccc-eEEEEEecCCCEEEEEe----cCCeEEEEECCCCceeeEe
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQVY 288 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~ 288 (389)
|+| ++.+|++++.|+.|++||++++ ..+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++.......
T Consensus 176 ~sp-dG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 176 WNL-DGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EEC-CCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 999 8899999999999999999987 677788888765 45678999888877654 4789999999876543332
Q ss_pred eccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458 289 YQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (389)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (389)
.... ....+....|++++++|++++ .|+.|++||+.+++...... ..+..++.+++|.|.
T Consensus 254 ~~~d---~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~---~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 254 VDLD---QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS---YSSVEPHKGLCMMPK 314 (493)
T ss_pred eccC---CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee---ccCCCCCcceEeccc
Confidence 2111 112356677999999999887 59999999999988776653 345667889999885
No 68
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=222.90 Aligned_cols=307 Identities=18% Similarity=0.280 Sum_probs=231.9
Q ss_pred CcccCCCcce-----eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeE----EEeeCCCcEEEEEECC
Q 016458 49 PVSFGPTDLV-----CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH----AIKLPCAWVMTCAFSP 119 (389)
Q Consensus 49 ~~~~~~~~~~-----~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~----~~~~~~~~v~~~~~~~ 119 (389)
...|++.+.. ....|+||.+.|++++|+.||++|||++.|++|++|++.+..... ......+..+.+.|.|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap 142 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP 142 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence 4456665543 445789999999999999999999999999999999987643211 1122334578999999
Q ss_pred CCcEEEEe-cCCCcEEEEeCCCCCCCCCCCccee-----eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee
Q 016458 120 TGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSR-----MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193 (389)
Q Consensus 120 ~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 193 (389)
|-+-+++. -....+++|.+...+.......... ....|.-.+..+-....+ .++++++.|..|.+|++. |+.
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cce
Confidence 98776554 4456799998876554333332222 223455566666666554 899999999999999998 788
Q ss_pred EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-------cceeEEeeeccceEEEEEecCCCEEE
Q 016458 194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-------RAVRTFHGHEGDVNTVKFFPDGNRFG 266 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (389)
+..+ ......-+..+.+| +++++++++....|++|.+--.. ..+..+.+|...|..++|+|+...++
T Consensus 221 L~~i-----dtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 221 LQSI-----DTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV 294 (420)
T ss_pred eeee-----ccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence 8777 45666677889999 99999999999999999863221 34567899999999999999999999
Q ss_pred EEecCCeEEEEECCCC-------ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC
Q 016458 267 TGSDDGTCRLFDIRTG-------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (389)
Q Consensus 267 ~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (389)
+.+.||++++||.+-. +.+............. ...+.++|.|+.|+++.. ..+.+|..++++....+.
T Consensus 295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~-p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e--- 369 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE-PVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELE--- 369 (420)
T ss_pred EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC-ceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHH---
Confidence 9999999999997532 2222221111111222 348999999999988754 479999999998888776
Q ss_pred CCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 340 NSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
..|.+.|++++|+++|++++++| |..+++
T Consensus 370 ~~h~~~Is~is~~~~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 370 DIHSTTISSISYSSDGKYIATCG-DRYVRV 398 (420)
T ss_pred HhhcCceeeEEecCCCcEEeeec-ceeeee
Confidence 78999999999999999999987 567777
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=5e-35 Score=258.70 Aligned_cols=299 Identities=21% Similarity=0.314 Sum_probs=248.2
Q ss_pred cccc-cCcEEEEEEcCCCCeEEEEe--cCCcEEEEeCCC------------CCeeEEEeeCCCcEEEEEECCCCcEEEEe
Q 016458 63 LQGH-AGKVYSLDWTSERNRIVSAS--QDGRLIVWNALT------------SQKTHAIKLPCAWVMTCAFSPTGQSVACG 127 (389)
Q Consensus 63 l~~h-~~~v~~~~~~~~~~~l~~~~--~dg~v~iw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 127 (389)
+.+| ...|.+++.+|+|..+|||+ .||.++||+.+. .+.+.+...|.+.|+|+.|+|||++||+|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence 3344 45899999999999999999 899999997632 24456667889999999999999999999
Q ss_pred cCCCcEEEEeCCC-----------CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEE
Q 016458 128 GLDSVCSIFNLNS-----------PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 196 (389)
Q Consensus 128 ~~dg~i~vw~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 196 (389)
++|+.|.||.... +......+.....+.+|.+.|.+++|+|++ .++++++.|++|.+||..+...+..
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeee
Confidence 9999999999883 112234556778899999999999999986 8999999999999999999999998
Q ss_pred ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee------ccceEEEEEecCCCEEEEEec
Q 016458 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTVKFFPDGNRFGTGSD 270 (389)
Q Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~ 270 (389)
+ .+|.+.|..+.|.| -+++|++-+.|++|++|++.+. ...+.+..+ ...+..+.|||||++|++...
T Consensus 167 l-----~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 167 L-----RGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred e-----ecccccccceEECC-ccCeeeeecCCceEEEEEcccc-eeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 8 89999999999999 8999999999999999997764 444444433 234788999999999998752
Q ss_pred ----CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC-----CC------------EEEEEecCCcEEEEEcccc
Q 016458 271 ----DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-----GR------------LLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 271 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~~~~~dg~i~i~d~~~~ 329 (389)
-..+.|.+-.+.+.-..+..+.. ++.++.|+|. .+ .+|+|+.|++|.||.....
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-----p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-----PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-----ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 34688888776666666655444 5999999972 11 6788999999999999888
Q ss_pred eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458 330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
+++.... .-....|.+++|+|||..|++++.||+|.+ ..+++.++
T Consensus 315 RPl~vi~---~lf~~SI~DmsWspdG~~LfacS~DGtV~~----i~Fee~El 359 (942)
T KOG0973|consen 315 RPLFVIH---NLFNKSIVDMSWSPDGFSLFACSLDGTVAL----IHFEEKEL 359 (942)
T ss_pred Cchhhhh---hhhcCceeeeeEcCCCCeEEEEecCCeEEE----EEcchHHh
Confidence 8877664 445678999999999999999999999999 88887665
No 70
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=215.94 Aligned_cols=268 Identities=20% Similarity=0.273 Sum_probs=218.0
Q ss_pred cccCCCCCcccCCC---cceeeeec-ccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC--CeeEEEeeCCCcEEEE
Q 016458 42 SRSQGRAPVSFGPT---DLVCCRTL-QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTC 115 (389)
Q Consensus 42 ~~~~~~~~~~~~~~---~~~~~~~l-~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~ 115 (389)
+.+.+.....|+.. ...+...| .+|+..|..++|+|.|++||+|+.|.++.||.-..+ +.+..+.+|...|.++
T Consensus 32 scg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~V 111 (312)
T KOG0645|consen 32 SCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCV 111 (312)
T ss_pred eecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEE
Confidence 33445555566555 46666666 369999999999999999999999999999976544 5688899999999999
Q ss_pred EECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC-C--e
Q 016458 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-G--L 192 (389)
Q Consensus 116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~--~ 192 (389)
+|+++|++||+++.|..|-||.+... .++.+...+..|...|..+.|+|.. .+|++++.|.+|++|+-.. . .
T Consensus 112 aws~sG~~LATCSRDKSVWiWe~ded----dEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~ 186 (312)
T KOG0645|consen 112 AWSASGNYLATCSRDKSVWIWEIDED----DEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWE 186 (312)
T ss_pred EEcCCCCEEEEeeCCCeEEEEEecCC----CcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCee
Confidence 99999999999999999999999853 3667889999999999999999986 6999999999999998773 2 5
Q ss_pred eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCC
Q 016458 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 272 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 272 (389)
+...+ .+|...|.+++|++ .+..|++++.|++++||..... .-..|..++..+.|. ...|++++.|+
T Consensus 187 c~~tl-----~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~ 253 (312)
T KOG0645|consen 187 CVQTL-----DGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDD 253 (312)
T ss_pred EEEEe-----cCccceEEEEEecC-CCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCC
Confidence 67777 78889999999998 7889999999999999986633 112377889999998 45799999999
Q ss_pred eEEEEECCCCc--eeeEeeccCCCCCCCCeeEEEeCCC-CCEEEEEecCCcEEEEEcc
Q 016458 273 TCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 273 ~i~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~ 327 (389)
.|++|.-.... +...+.......|...|+++.|+|. .+.|++|+.||.|++|.+.
T Consensus 254 ~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 254 AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999866421 1111111112234446999999995 6799999999999999864
No 71
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=219.44 Aligned_cols=275 Identities=21% Similarity=0.333 Sum_probs=225.4
Q ss_pred ccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCC-Cee-EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458 66 HAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTS-QKT-HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (389)
Q Consensus 66 h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (389)
-.+.|.+|+||| ...+++++|.||+||+|+++.. ..+ .....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 356799999999 5557779999999999999773 332 3345678999999999999999999999999999999865
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCCC-cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (389)
...+..|.++|.++.|.+... ..|++|+.|.+|+.||.+....+..+ .....++++..- ..+
T Consensus 106 --------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~------~LPeRvYa~Dv~---~pm 168 (347)
T KOG0647|consen 106 --------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL------QLPERVYAADVL---YPM 168 (347)
T ss_pred --------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee------eccceeeehhcc---Cce
Confidence 567788999999999988642 37899999999999999999888886 456678887763 468
Q ss_pred EEEeeCCCceEEEeCCCCCcceeEEe-eeccceEEEEEecCCCEEEEEecCCeEEEEECCCC--ceeeEeeccCCCC---
Q 016458 222 FVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG--HQLQVYYQQHGEN--- 295 (389)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~--- 295 (389)
++++..+..|.+|+++++....+... .-.-.++|++..++.+..+.|+-+|.+.+..+..+ +.-..+..+...+
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~ 248 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN 248 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC
Confidence 89999999999999987643333222 23345889999999888899999999999999886 4444454444221
Q ss_pred -CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458 296 -EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (389)
Q Consensus 296 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 361 (389)
....|++++|+|....|++.+.||.+.+||-.....+++. ..|..+|++.+|+.+|.+++-+
T Consensus 249 ~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s----~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 249 DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS----ETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc----CcCCCccceeEecCCCCEEEEE
Confidence 2446899999999999999999999999999888888877 7899999999999999988755
No 72
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-35 Score=251.35 Aligned_cols=269 Identities=23% Similarity=0.315 Sum_probs=233.2
Q ss_pred CCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE
Q 016458 46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA 125 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 125 (389)
.+.+..|+-.-..++..|.+|.++|..++|+|++.++++|+.|-.|++|+..+.+++.++.+|-..|..+.|++.-.+++
T Consensus 30 sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIl 109 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWIL 109 (1202)
T ss_pred CceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEE
Confidence 34556787777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEe--------
Q 016458 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF-------- 197 (389)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------- 197 (389)
+++.|.+|+||+..+++ ++..+.+|+..|.|..|+|.. .++++++-|.+|++||+..-.....-
T Consensus 110 SASDDQTIrIWNwqsr~-------~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~ 181 (1202)
T KOG0292|consen 110 SASDDQTIRIWNWQSRK-------CIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQM 181 (1202)
T ss_pred EccCCCeEEEEeccCCc-------eEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhh
Confidence 99999999999999876 889999999999999999986 68999999999999998642111100
Q ss_pred ----------------cCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEEEEEec
Q 016458 198 ----------------GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFP 260 (389)
Q Consensus 198 ----------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~ 260 (389)
-.....+|...|+-++|+| .-.++++|+.|..|++|.+...+ -.+.+..+|.+.|.++-|+|
T Consensus 182 ~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 182 RGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred hccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC
Confidence 0112368999999999999 77899999999999999987542 23456789999999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458 261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (389)
..+++++.+.|++|++||+...+.+.++...+.. ...++-+|..+++++|. |+-+.||.++..
T Consensus 261 ~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR-----FW~laahP~lNLfAAgH-DsGm~VFkleRE 323 (1202)
T KOG0292|consen 261 HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR-----FWILAAHPELNLFAAGH-DSGMIVFKLERE 323 (1202)
T ss_pred ccceeEecCCCccEEEEecccccceeeeeccCCe-----EEEEEecCCcceeeeec-CCceEEEEEccc
Confidence 9999999999999999999999999998776654 89999999999888885 555777776543
No 73
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.6e-34 Score=237.57 Aligned_cols=260 Identities=32% Similarity=0.549 Sum_probs=226.9
Q ss_pred CCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE
Q 016458 46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA 125 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 125 (389)
......|+.........+.+|...+.++.|+|++++|++++.||.|++|++.+++....+..|...+.++.|++++++++
T Consensus 30 ~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (289)
T cd00200 30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILS 109 (289)
T ss_pred CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEE
Confidence 45566677777777788899999999999999999999999999999999999888888888888999999999999999
Q ss_pred EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (389)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 205 (389)
+++.+|.|.+|++.... ....+..|...+.++.|+|++ .++++++.++.|++||+.+++....+ ..+
T Consensus 110 ~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~-----~~~ 176 (289)
T cd00200 110 SSSRDKTIKVWDVETGK-------CLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATL-----TGH 176 (289)
T ss_pred EecCCCeEEEEECCCcE-------EEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeE-----ecC
Confidence 88889999999998543 455666888999999999985 67777777999999999988888777 577
Q ss_pred CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee
Q 016458 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 285 (389)
...+.++.|+| +++.+++++.++.|++||++.. ..+..+..|...+.+++|+|++.++++++.||.|++||+.+++..
T Consensus 177 ~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 177 TGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred ccccceEEECC-CcCEEEEecCCCcEEEEECCCC-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 78999999999 7777888888999999999876 677777788889999999999888888888999999999988777
Q ss_pred eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (389)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (389)
..+..+. ..+.+++|+|++++|++++.||.+++|+
T Consensus 255 ~~~~~~~-----~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 255 QTLSGHT-----NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEccccC-----CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7765332 3599999999999999999999999996
No 74
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.6e-36 Score=242.63 Aligned_cols=262 Identities=22% Similarity=0.370 Sum_probs=225.0
Q ss_pred CCeeEEEeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEe
Q 016458 99 SQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS 177 (389)
Q Consensus 99 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 177 (389)
.+.+..+.+|...|+++.|.| .+.+|++++.|+.|+||++.... .+.+++.+|..+|.+++|+++| ..|+++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~------~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~ 276 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR------RCLRTFKGHRKPVRDASFNNCG-TSFLSA 276 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc------ceehhhhcchhhhhhhhccccC-Ceeeee
Confidence 355778889999999999999 89999999999999999998722 3789999999999999999998 789999
Q ss_pred eCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE
Q 016458 178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 257 (389)
Q Consensus 178 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~ 257 (389)
+.|+.|++||.++|++...+ .....++++.++|++.+.+++|+.|+.|+.||+|++ +.++.+..|-+.|..+.
T Consensus 277 sfD~~lKlwDtETG~~~~~f------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~ 349 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRF------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDIT 349 (503)
T ss_pred ecceeeeeeccccceEEEEE------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeE
Confidence 99999999999999999998 455678999999977799999999999999999998 88889999999999999
Q ss_pred EecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (389)
Q Consensus 258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (389)
|-++|+++++.+.|+.++||+.+.+..+......... ...++..+|+++++++-+.|+.|.+|.+...-....-+
T Consensus 350 F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~h----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK- 424 (503)
T KOG0282|consen 350 FVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMH----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK- 424 (503)
T ss_pred EccCCceEeeeccCccEEEEEcCCCccchhhcchhhc----cCcceecCCCCCeehhhccCceEEEEecccccccCHhh-
Confidence 9999999999999999999999887766655443222 36789999999999999999999999865432221111
Q ss_pred cCCCCC--CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 338 LQNSHE--GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 338 ~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
...+|. +.-..+.|||||.+|++|+.||.+.+ ||.++-++..
T Consensus 425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~----wdwkt~kl~~ 468 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF----WDWKTTKLVS 468 (503)
T ss_pred hhcceeccCceeeEEEcCCCCeEEeecCCccEEE----eechhhhhhh
Confidence 114554 45667899999999999999999999 9999877653
No 75
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.5e-32 Score=198.68 Aligned_cols=299 Identities=21% Similarity=0.321 Sum_probs=240.5
Q ss_pred CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC------CC-----e----eEEEeeCCCcEEEEEECC
Q 016458 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT------SQ-----K----THAIKLPCAWVMTCAFSP 119 (389)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~------~~-----~----~~~~~~~~~~v~~~~~~~ 119 (389)
+.+.++..|. .+..|.+++|+|.|.+.++|+...+.+|-.... +. + ...-+.|.+.|.|.+|+|
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 3456665654 466799999999999999999999998874321 11 1 122345778999999999
Q ss_pred CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC---CCcEEEEee-CCCeEEEEeCCCCeeEE
Q 016458 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSS-GDQTCVLWDITTGLRTS 195 (389)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~iwd~~~~~~~~ 195 (389)
.|.++++|+.|..|++..++..... ..-....+..|.+.|..++|..+ +..+|++++ .|..|++-|...++...
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~--~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCN--ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred ccCeEEecCCCceEEEEeccccccc--ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence 9999999999999999988764421 11234456789999999999764 335666655 48889999999999998
Q ss_pred EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--e-----ccceEEEEEecCCCEEEEE
Q 016458 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--H-----EGDVNTVKFFPDGNRFGTG 268 (389)
Q Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-----~~~i~~~~~~~~~~~l~~~ 268 (389)
.+ .+|.+.|.++--- ++-++++|+.|.+|++||++-. .++..+.. | ...|.+++..|.|++|++|
T Consensus 178 a~-----sghtghilalysw--n~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 178 AL-----SGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred ee-----cCCcccEEEEEEe--cCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 88 7999999887533 7789999999999999999977 55555432 2 2568999999999999999
Q ss_pred ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc----eEEEeecCcCCCCCC
Q 016458 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGSLQNSHEG 344 (389)
Q Consensus 269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~ 344 (389)
..|....+||++.++.++.+..+... |.++.|+|...|+++++.|..|++-|++.. -++... ..|..
T Consensus 250 ~~dssc~lydirg~r~iq~f~phsad-----ir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv----~ehkd 320 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRFHPHSAD-----IRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV----AEHKD 320 (350)
T ss_pred cCCCceEEEEeeCCceeeeeCCCccc-----eeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE----EeccC
Confidence 99999999999999999998776554 999999999999999999999999998632 122222 56888
Q ss_pred CeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 345 RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 345 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
.+..+.|+|..-.+++.+.|.++.+ |-+.
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tl----wa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATL----WALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEE----eccC
Confidence 8889999999888999999999999 9764
No 76
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=5.3e-32 Score=236.86 Aligned_cols=257 Identities=16% Similarity=0.223 Sum_probs=200.7
Q ss_pred EecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC-CcEEEEecCCCcEEEEeCCCCCCC-CCCCcceeeecccccceE
Q 016458 85 ASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVS 162 (389)
Q Consensus 85 ~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~v~ 162 (389)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||.|++|++...... .........+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998888888889999999999999996 789999999999999999764211 001123446788999999
Q ss_pred EEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc
Q 016458 163 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242 (389)
Q Consensus 163 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 242 (389)
+++|+|++..++++++.|+.|++||++++.....+ .+...|.+++|+| ++.+|++++.|+.|++||++++ ..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i------~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg-~~ 201 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI------NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQ-EI 201 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE------ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCC-cE
Confidence 99999998666789999999999999998877665 2456899999999 8889999999999999999987 77
Q ss_pred eeEEeeeccceEEE-----EEecCCCEEEEEecCC----eEEEEECCC-CceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458 243 VRTFHGHEGDVNTV-----KFFPDGNRFGTGSDDG----TCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (389)
Q Consensus 243 ~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (389)
+..+.+|.+.+... .|++++.+|++++.|+ .|++||++. ..++....... ....+......++|.++
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~---~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN---ASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC---CccceEEeeeCCCCCEE
Confidence 78888998765432 3458889999988774 799999995 44444432221 12223444445668899
Q ss_pred EEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
++|..|+.|++|++..+. +..+.. ..+..++.+++|.|..
T Consensus 279 lsGkGD~tIr~~e~~~~~-~~~l~~--~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS-IRKVNE--YKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEECCCeEEEEEccCCc-EEeecc--cccCCCccceEEcccc
Confidence 999999999999998764 333332 2466788999999964
No 77
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-32 Score=210.08 Aligned_cols=273 Identities=21% Similarity=0.329 Sum_probs=222.7
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (389)
.+.|+.|.|+|.++.|++++.||++++|+.........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~---- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN---- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc----
Confidence 457999999999999999999999999999887554444 4678899999987 5678999999999999999865
Q ss_pred CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (389)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (389)
...+..|...|.|+.+++.. ..+++|+.|++|++||.+.......+ .....|.++.. .++.|++|+
T Consensus 87 ----~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~------d~~kkVy~~~v---~g~~LvVg~ 152 (323)
T KOG1036|consen 87 ----EDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTF------DQGKKVYCMDV---SGNRLVVGT 152 (323)
T ss_pred ----ceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccccc------ccCceEEEEec---cCCEEEEee
Confidence 45667899999999999865 68999999999999999985555554 34457888877 457888999
Q ss_pred CCCceEEEeCCCCCcceeEE-eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC----ceeeEeeccCCC----CCC
Q 016458 227 CDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG----HQLQVYYQQHGE----NEI 297 (389)
Q Consensus 227 ~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~----~~~ 297 (389)
.+..+.+||+++...+.+.. ..-+-.++|+++-|++.-+++++-||.|.+=.++.. .....+..+... ...
T Consensus 153 ~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII 232 (323)
T ss_pred cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence 99999999999875554222 223457899999998888999999999988776655 333444433322 223
Q ss_pred CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
.+|++++|+|-...|++|+.||.|.+||+.+.+.+..+ ..-...|.+++|+.||..||+|+.
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~----~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL----AKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeceeEeccccceEEecCCCceEEEccCcchhhhhhc----cCCCCceEEEEeccCCCeEEEEec
Confidence 47999999999999999999999999999999999988 556778999999999999999874
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=214.60 Aligned_cols=267 Identities=25% Similarity=0.444 Sum_probs=227.0
Q ss_pred cCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE
Q 016458 44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123 (389)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (389)
..+..|..-.-....-+-+|.||+++|.....+.+...-|+++.|-+-++||.-+|..++.+. |..-|.+++|+.|.++
T Consensus 36 ~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~ 114 (334)
T KOG0278|consen 36 SKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNY 114 (334)
T ss_pred ccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchh
Confidence 334444444445566778999999999999999998889999999999999999999998876 5567999999999999
Q ss_pred EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (389)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 203 (389)
|++|+.+..++|||++.++. ....+.+|.+.|..+.|.... +.+++++.|++||+||.+++..+..+
T Consensus 115 lltgg~ekllrvfdln~p~A------pp~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL------ 181 (334)
T KOG0278|consen 115 LLTGGQEKLLRVFDLNRPKA------PPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSL------ 181 (334)
T ss_pred hhccchHHHhhhhhccCCCC------CchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEEE------
Confidence 99999999999999998553 456678999999999999875 78899899999999999999999987
Q ss_pred CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
....+|+++.+++ +++++.+ ...+.|.+||..+. ..++.+. ....|.+..++|+...+++|+.|+.++.||..++.
T Consensus 182 ~~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf-~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 182 EFNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSF-GLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred ecCCCCcceeecc-CCCEEEE-ecCceeEEeccccc-cceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCc
Confidence 5677899999998 7766554 55788999999987 5666554 34568999999999999999999999999999999
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (389)
.+..+. ..+..+|.++.|+|+|...++|+.||+|++|.+..++..
T Consensus 258 Ei~~~n----kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 258 EIGSYN----KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeeecc----cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 888752 233446999999999999999999999999998766554
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=229.15 Aligned_cols=255 Identities=23% Similarity=0.353 Sum_probs=220.1
Q ss_pred cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC-CcEEEEecCC
Q 016458 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-GQSVACGGLD 130 (389)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 130 (389)
++.......+++.-.+..|.++.|..||++||+|...|.|+|||..+...+..+..|..++..+.|+|+ +..+++|+.|
T Consensus 53 y~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd 132 (487)
T KOG0310|consen 53 YSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD 132 (487)
T ss_pred EecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC
Confidence 334444555566678889999999999999999999999999997776778889999999999999995 5667788889
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCe
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADV 209 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v 209 (389)
+.+++||+.+.. ....+.+|++.|.|.+|+|..+.++++|+.||.|++||++.. ..+..+ .|..+|
T Consensus 133 ~v~k~~d~s~a~-------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el------nhg~pV 199 (487)
T KOG0310|consen 133 KVVKYWDLSTAY-------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL------NHGCPV 199 (487)
T ss_pred ceEEEEEcCCcE-------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe------cCCCce
Confidence 999999998743 456789999999999999998889999999999999999987 555555 799999
Q ss_pred eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (389)
.++.+.| ++.++++++ ...+++||+-++.+.+.....|...|+|+++..++..|++++-|+.+++||+.+.+.+..+.
T Consensus 200 e~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 200 ESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK 277 (487)
T ss_pred eeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence 9999999 777888776 46899999998877777777799999999999999999999999999999988877777665
Q ss_pred ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
... +|.+++.+|++..+++|..||.+.+-+..
T Consensus 278 ~~~------pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 278 YPG------PVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ccc------ceeeEEecCCCceEEEecccceeeeehhh
Confidence 533 49999999999999999999988777443
No 80
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.3e-33 Score=218.92 Aligned_cols=265 Identities=24% Similarity=0.382 Sum_probs=218.7
Q ss_pred CCCcccCCCcceeeeecccccCcEEEEEEcCCCC---eEEEEecCCcEEEEeCCCCCe----eEEEeeCCCcEEEEEECC
Q 016458 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERN---RIVSASQDGRLIVWNALTSQK----THAIKLPCAWVMTCAFSP 119 (389)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~---~l~~~~~dg~v~iw~~~~~~~----~~~~~~~~~~v~~~~~~~ 119 (389)
.....|+. ..+....+.||.++|.+++|..... .|++++.|.++++|.++.++. +....+|...|.++...+
T Consensus 125 g~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~ 203 (423)
T KOG0313|consen 125 GTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS 203 (423)
T ss_pred CeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC
Confidence 33344443 3577889999999999999865443 599999999999999877654 333458999999999999
Q ss_pred CCcEEEEecCCCcEEEEeCCCCC------------------CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC
Q 016458 120 TGQSVACGGLDSVCSIFNLNSPT------------------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181 (389)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 181 (389)
+|..+++|+.|..+.+|+..... ...........+.+|..+|.++.|++. ..+++++.|.
T Consensus 204 sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDH 281 (423)
T KOG0313|consen 204 SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDH 281 (423)
T ss_pred CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccc
Confidence 99999999999999999943311 011223355678899999999999994 5899999999
Q ss_pred eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc--ceeEEeeeccceEEEEEe
Q 016458 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFF 259 (389)
Q Consensus 182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~ 259 (389)
+|+.||+.++.....+ .....+.++..+| ..++|++|+.|..|++||.|++.. ...++.+|.+.|.++.|+
T Consensus 282 TIk~WDletg~~~~~~------~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 282 TIKVWDLETGGLKSTL------TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred eEEEEEeecccceeee------ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence 9999999999988886 4566899999999 889999999999999999998743 456788999999999999
Q ss_pred c-CCCEEEEEecCCeEEEEECCCCc-eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 260 P-DGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 260 ~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
| +...|++++.|+++++||+++.+ ++..+..+.. .|.++.|+ ++.++++|+.|.+|+|+...
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D-----Kvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND-----KVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc-----eEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9 55678999999999999999987 7777755543 49999997 56799999999999998643
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=240.03 Aligned_cols=267 Identities=27% Similarity=0.433 Sum_probs=234.6
Q ss_pred cccCCCCCcccCCCcceeeee-cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC
Q 016458 42 SRSQGRAPVSFGPTDLVCCRT-LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (389)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (389)
..+.......|+..+...+.. |.||.+.|.++++..-++.|++|+.|.++++||..+|++...+.+|.+.|.++...
T Consensus 223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~-- 300 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID-- 300 (537)
T ss_pred ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--
Confidence 344445556899998888888 99999999999998877899999999999999999999999999999999988764
Q ss_pred CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (389)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 200 (389)
...+++|+.|.+|++|++.++. ....+.+|.++|.++... + .++++|+.|++|++||+.+++++..+
T Consensus 301 ~~~~~sgs~D~tVkVW~v~n~~-------~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl--- 367 (537)
T KOG0274|consen 301 PFLLVSGSRDNTVKVWDVTNGA-------CLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSL--- 367 (537)
T ss_pred CceEeeccCCceEEEEeccCcc-------eEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeee---
Confidence 5577889999999999999766 777888899999999998 2 68999999999999999999999999
Q ss_pred ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (389)
.+|...|.++.+.+ . ..+++|+.|+.|++||+++..+++..+.+|..-+..+.+ .+++|++++.|+.|++||..
T Consensus 368 --~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 368 --SGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred --cCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecc
Confidence 78999999998865 3 889999999999999999875788899999998877766 57799999999999999999
Q ss_pred CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
+++++..+... +...+..+++. ...+++++.||.+.+||+++++....+
T Consensus 442 ~~~~~~~~~~~----~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 442 EGECLRTLEGR----HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cCceeeeeccC----CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 99999988774 22247887775 467888999999999999999988776
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-31 Score=206.42 Aligned_cols=259 Identities=20% Similarity=0.293 Sum_probs=212.7
Q ss_pred CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC
Q 016458 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179 (389)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 179 (389)
+..+.+....+.|.++.|+++|..+++++.|..+++||...++ ...++..++..+..++|.... +.++.++.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-------~~~ti~skkyG~~~~~Fth~~-~~~i~sSt 76 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-------QVKTINSKKYGVDLACFTHHS-NTVIHSST 76 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-------eeeEeecccccccEEEEecCC-ceEEEccC
Confidence 3444555566789999999999999999999999999999876 667777777788889998875 45666665
Q ss_pred --CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE
Q 016458 180 --DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 257 (389)
Q Consensus 180 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~ 257 (389)
|.+|+..++.+.+.++.+ .+|...|.+++.+| .++.+++++.|++|++||++.. ++...+.. ..-..++
T Consensus 77 k~d~tIryLsl~dNkylRYF-----~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~--~~~pi~A 147 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYF-----PGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVK-KCQGLLNL--SGRPIAA 147 (311)
T ss_pred CCCCceEEEEeecCceEEEc-----CCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCC-CCceEEec--CCCccee
Confidence 899999999999999999 89999999999999 6689999999999999999966 55544433 3345589
Q ss_pred EecCCCEEEEEecCCeEEEEECCCC--ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 258 FFPDGNRFGTGSDDGTCRLFDIRTG--HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 258 ~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
|.|+|-++|++...+.|++||++.. .+...+.... +.....+.+.|||||++++.++..+.+++.|.-+|....++
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence 9999999999998889999999974 3344443332 33345899999999999999999999999999999988888
Q ss_pred cCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 336 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
........-+ -..+|+||++++++|+.||+|.+ |++++|..+
T Consensus 226 s~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~v----w~~~tg~~v 267 (311)
T KOG1446|consen 226 SGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHV----WNLETGKKV 267 (311)
T ss_pred eeccCCCCcc-eeEEECCCCcEEEEecCCCcEEE----EEcCCCcEe
Confidence 5433332223 56789999999999999999999 999998654
No 83
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=224.31 Aligned_cols=251 Identities=18% Similarity=0.309 Sum_probs=212.7
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC-CCcEEEEEECCCCcEEEEecCCCcEE
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQSVACGGLDSVCS 134 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~ 134 (389)
.++..+++.||..+|..+.||||.++|++++.|..+.+||..+|.....+... ...+.+++|.|||..+++|+.|+.|.
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 46778999999999999999999999999999999999999999988877644 56799999999999999999999999
Q ss_pred EEeCCCCCCCCCCCcceeeeccc-ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
.||++... .....+- ...|.+++..+|| .++++.+.|..|++++.++....... ....+|++++
T Consensus 338 ~wdlDgn~--------~~~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~li------se~~~its~~ 402 (519)
T KOG0293|consen 338 MWDLDGNI--------LGNWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRGLI------SEEQPITSFS 402 (519)
T ss_pred EecCCcch--------hhcccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhccc------cccCceeEEE
Confidence 99998743 1122221 2568999999998 67888889999999999887666543 4567899999
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccc--eEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD--VNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (389)
.+. +++++++.-.+..+++||+... ..++.+.+|... +..-+|-. +..++++|+.|+.|+||+..+++++..+..
T Consensus 403 iS~-d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 403 ISK-DGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred EcC-CCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 998 8899999999999999999966 788888888764 44445654 558999999999999999999999999977
Q ss_pred cCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEccc
Q 016458 291 QHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 328 (389)
+.. .|++++|+|... ++|+++.||+|+||....
T Consensus 481 Hs~-----~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 481 HSK-----TVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred Ccc-----eeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 655 499999999655 889999999999998653
No 84
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=5.5e-33 Score=223.38 Aligned_cols=258 Identities=17% Similarity=0.316 Sum_probs=213.9
Q ss_pred cccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCC----------eeEEEeeCCCcEEEEEECCC-CcEEEEecCC
Q 016458 63 LQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQ----------KTHAIKLPCAWVMTCAFSPT-GQSVACGGLD 130 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~----------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 130 (389)
..-|.+.|+.+.+-|+.. .+|+.+..+.|.|||..+-. +-..+.+|...-..++|++. .-.|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 345999999999999664 67778889999999985422 22367788877788999984 4578999999
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC--CeeEEEecCcccCCCCCC
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--GLRTSVFGGEFQSGHTAD 208 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~ 208 (389)
+.|++||+...............+.+|...|..++|++....+|++++.|+.+.|||+++ .+..... ..|...
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~-----~ah~~~ 274 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV-----KAHSAE 274 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc-----cccCCc
Confidence 999999999866544456677889999999999999999889999999999999999995 3333333 789999
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceee-
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQ- 286 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~- 286 (389)
+.|++|+|.++.+|++|+.|++|.+||+|+...++..+.+|...|.++.|+| ....|++++.|+.+.+||+..-....
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 9999999999999999999999999999999899999999999999999999 45678999999999999987532221
Q ss_pred ----------EeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcc
Q 016458 287 ----------VYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 287 ----------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~ 327 (389)
.+..+ .+|...|..+.|+|+.. .|++.+.|+.+.||.+.
T Consensus 355 ~eda~dgppEllF~H--gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIH--GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhhhccCCcceeEEe--cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 11111 34566799999999988 56677899999999975
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=216.50 Aligned_cols=260 Identities=23% Similarity=0.314 Sum_probs=222.8
Q ss_pred CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC-CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (389)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 187 (389)
.+.+.|..|+|||++|++|+.||-|.+|+..+++.+ .........+..+..+|.|+.|+.+. .++++|+.||.|++|.
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWR 291 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEE
Confidence 456889999999999999999999999999987632 22333444566788999999999997 7899999999999999
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEE
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 267 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 267 (389)
+++|.++..+. ..|...|+++.|+. ++..+++++.|.++++.-++++ +.+..+++|.+.|+...|.++|.++++
T Consensus 292 i~tG~ClRrFd----rAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 292 IETGQCLRRFD----RAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EecchHHHHhh----hhhccCeeEEEEcc-CcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcCCCCeEEE
Confidence 99999999884 58999999999998 7778899999999999999998 899999999999999999999999999
Q ss_pred EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCe
Q 016458 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI 346 (389)
Q Consensus 268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 346 (389)
++.||+|++|+..+.+++.++.... ...+|+++..-|.+ ..++++...++|+|.++ .|+.+..+..- ....+..
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~---~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSG-kREgGdF 440 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLG---TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSG-KREGGDF 440 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCC---CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccC-CccCCce
Confidence 9999999999999999998887643 34468888777754 47888888899999997 57777777543 2334556
Q ss_pred eEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCc
Q 016458 347 TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPW 384 (389)
Q Consensus 347 ~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~ 384 (389)
.+.+.+|.|.++.+.+.|+.++. +.+.+|++...
T Consensus 441 i~~~lSpkGewiYcigED~vlYC----F~~~sG~LE~t 474 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYC----FSVLSGKLERT 474 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEE----EEeecCceeee
Confidence 67788999999999999999999 99999988654
No 86
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.3e-31 Score=231.97 Aligned_cols=256 Identities=18% Similarity=0.218 Sum_probs=193.2
Q ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC-----CCCC-CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD-----KDGN-LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 184 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 184 (389)
.|.....++++..+++++.+.....|+...+.. ..+. ......+.+|.+.|.+++|+|.++.+|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 344555566666666666666666666543210 0000 0112346789999999999994347899999999999
Q ss_pred EEeCCCCe-------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE
Q 016458 185 LWDITTGL-------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 257 (389)
Q Consensus 185 iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~ 257 (389)
+||+.++. .+..+ .+|...|.+++|+|...++|++++.|+.|++||+++. .....+..|...|.+++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L-----~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHL-----QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLE 175 (493)
T ss_pred EEecCCCccccccCcceEEe-----cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEE
Confidence 99997653 33444 6899999999999966689999999999999999987 67778888999999999
Q ss_pred EecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe----cCCcEEEEEcccceEEE
Q 016458 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKVVL 333 (389)
Q Consensus 258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~ 333 (389)
|+|++.+|++++.|+.|++||+++++.+..+..+... ....+.|.+++..+++++ .|+.|++||+++.....
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~----~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA----KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC----cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999999999999999999887766543322 245678888888777654 47899999998754332
Q ss_pred eecCcCCCCCCCeeEEEECCCCCeEEeee-CCCeeEEeecceecccCccc
Q 016458 334 NLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 334 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~W~~~~~~~~ 382 (389)
.... ..+...+....|++++.+|++++ .|+.|++ |++.++++.
T Consensus 252 ~~~~--~d~~~~~~~~~~d~d~~~L~lggkgDg~Iri----wdl~~~~~~ 295 (493)
T PTZ00421 252 STVD--LDQSSALFIPFFDEDTNLLYIGSKGEGNIRC----FELMNERLT 295 (493)
T ss_pred eEec--cCCCCceEEEEEcCCCCEEEEEEeCCCeEEE----EEeeCCceE
Confidence 2210 12334566678999999999988 4999999 999998754
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.5e-32 Score=204.28 Aligned_cols=251 Identities=20% Similarity=0.297 Sum_probs=215.1
Q ss_pred EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (389)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (389)
..++.|...+.+++|+.+|..|++|+.|+++.+|+++... ........+|.+.|-.++|+|..+.+|++++.|.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-----FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-----hhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 3456777889999999999999999999999999998742 23445567899999999999998899999999999
Q ss_pred EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (389)
Q Consensus 183 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (389)
|++||++.+++.... .....-.-+.|+| ++.++++++.|..|.+.|.++. +...... ....+..++|+.++
T Consensus 89 ir~wd~r~~k~~~~i------~~~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~-~~~~~~~-~~~e~ne~~w~~~n 159 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARI------ETKGENINITWSP-DGEYIAVGNKDDRITFIDARTY-KIVNEEQ-FKFEVNEISWNNSN 159 (313)
T ss_pred EEEEEeccCcEEEEe------eccCcceEEEEcC-CCCEEEEecCcccEEEEEeccc-ceeehhc-ccceeeeeeecCCC
Confidence 999999999999887 3344455678999 8889999999999999999976 4443332 34557889999888
Q ss_pred CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (389)
++++.....|.|.|......+++..+..+... ..++.|+|+|+|+|+|+.|-.+.+||+...-+...+ ..+
T Consensus 160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~sn-----CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i----sRl 230 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN-----CICIEFDPDGRYFATGSADALVSLWDVDELICERCI----SRL 230 (313)
T ss_pred CEEEEecCCceEEEEeccccccccccccCCcc-----eEEEEECCCCceEeeccccceeeccChhHhhhheee----ccc
Confidence 88888888899999999988888888766543 899999999999999999999999999988888888 788
Q ss_pred CCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 343 EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 343 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
+-+|..+.|+.||++||+|+.|..|-| =++++|.
T Consensus 231 dwpVRTlSFS~dg~~lASaSEDh~IDI----A~vetGd 264 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASASEDHFIDI----AEVETGD 264 (313)
T ss_pred cCceEEEEeccCcceeeccCccceEEe----EecccCC
Confidence 999999999999999999999999988 6666664
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-33 Score=231.81 Aligned_cols=294 Identities=21% Similarity=0.408 Sum_probs=240.0
Q ss_pred cccCcEE---EEEEcC-CCCeEEEEecCCcEEEEeCCCCC------eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEE
Q 016458 65 GHAGKVY---SLDWTS-ERNRIVSASQDGRLIVWNALTSQ------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS 134 (389)
Q Consensus 65 ~h~~~v~---~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 134 (389)
.|...|. ++..+. .+++|+||+.||.|++|+..... ....++.|..+|+.++...+++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3455555 555554 55679999999999999875432 3667788999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee--EEEecC----cccCCCCCC
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TSVFGG----EFQSGHTAD 208 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~----~~~~~~~~~ 208 (389)
+|+..... ..+..++..|...|.|+++......++++||-|+.|.+||+.++.. +..+.. ....++...
T Consensus 99 ~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 99 VWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred EeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 99987632 2367788899999999999433347899999999999999998732 222211 111377889
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 288 (389)
|++++.++ .+..+++|+..+.+++||.++. +.+..+.+|...|..+..++||..+++++.||+|++||+...+++.++
T Consensus 174 iYSLA~N~-t~t~ivsGgtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 174 IYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred eeeeecCC-cceEEEecCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 99999998 7789999999999999999998 777788899999999999999999999999999999999999999998
Q ss_pred eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 368 (389)
..+... +.++..+|+-.++++|+.||.|+.=|+++......+ -....+|..+..+.+.+-+-+++.|+.|+
T Consensus 252 ~vH~e~-----VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli----ck~daPv~~l~~~~~~~~~WvtTtds~I~ 322 (735)
T KOG0308|consen 252 IVHKEG-----VWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI----CKEDAPVLKLHLHEHDNSVWVTTTDSSIK 322 (735)
T ss_pred EeccCc-----eEEEeeCCCcceEEecCCCCcEEecccCCchhheEe----ecCCCchhhhhhccccCCceeeeccccce
Confidence 776543 999999999999999999999999999885333333 34556788888876555667888899999
Q ss_pred Eeecceeccc
Q 016458 369 VNLGFWRVQE 378 (389)
Q Consensus 369 i~~~~W~~~~ 378 (389)
- |....
T Consensus 323 r----W~~~~ 328 (735)
T KOG0308|consen 323 R----WKLEP 328 (735)
T ss_pred e----cCCcc
Confidence 8 87654
No 89
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=8.9e-31 Score=229.21 Aligned_cols=235 Identities=16% Similarity=0.225 Sum_probs=181.3
Q ss_pred ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee--------EEEec
Q 016458 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--------TSVFG 198 (389)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~ 198 (389)
|+.++.|++|+.... .....+.+|.+.|.+++|+|+.+.+|++|+.||.|++||+.++.. ...+
T Consensus 50 GG~~gvI~L~~~~r~-------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L- 121 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL- 121 (568)
T ss_pred CCceeEEEeeecCCC-------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-
Confidence 566788999987652 256778899999999999998557999999999999999986421 2233
Q ss_pred CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (389)
Q Consensus 199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (389)
.+|...|.+++|+|....++++++.|+.|++||+++. .....+. |...|.+++|+|+|.+|++++.|+.|++||
T Consensus 122 ----~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 122 ----KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE-KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIID 195 (568)
T ss_pred ----ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence 5788999999999955556789999999999999987 4455554 667899999999999999999999999999
Q ss_pred CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC----cEEEEEccc-ceEEEeecCcCCCCCCCeeEEEECC
Q 016458 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
++++..+..+..+.+......+....|++++.+|++++.|+ .|+|||++. .+++..+.. ..+.+.+......+
T Consensus 196 ~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l--d~~~~~L~p~~D~~ 273 (568)
T PTZ00420 196 PRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI--DNASAPLIPHYDES 273 (568)
T ss_pred CCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe--cCCccceEEeeeCC
Confidence 99998887776544321111223344678999999887764 699999985 455544411 33444444454556
Q ss_pred CCCeEEeeeCCCeeEEeecceecccCcc
Q 016458 354 DGSALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 354 ~~~~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
+|.++++|+.|+.|++ |++..+.+
T Consensus 274 tg~l~lsGkGD~tIr~----~e~~~~~~ 297 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRY----YQHSLGSI 297 (568)
T ss_pred CCCEEEEEECCCeEEE----EEccCCcE
Confidence 7999999999999999 99987753
No 90
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.3e-33 Score=235.67 Aligned_cols=284 Identities=19% Similarity=0.273 Sum_probs=229.6
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee----EEEeeC---CCcEEEEEECC-CCcEEEEecCCCcEEEEeCC
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT----HAIKLP---CAWVMTCAFSP-TGQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~----~~~~~~---~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~ 139 (389)
....+|..+++-..++.++.. .+.||.+...... ..+... ...+..+.|.. ..++||+++.+|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 356677788998889888875 6788866543221 111111 12355677875 56889999999999999998
Q ss_pred CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
... .-+....+..|...+.++.|++..+++|++|+.||.|++||++.......+ ......|+.+.|+|..+
T Consensus 119 k~~----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-----~~nSESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 119 KSI----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-----RSNSESIRDVKFSPGYG 189 (839)
T ss_pred ccc----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-----cccchhhhceeeccCCC
Confidence 631 223566788999999999999999999999999999999999999888888 67888999999999999
Q ss_pred cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
+.|+++...|.+.+||+|.+.++...+.+|.++|.|+.|+|++.+||+||.|+.|+|||..+.+........ ...+
T Consensus 190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn----Tiap 265 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN----TIAP 265 (839)
T ss_pred ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe----ecce
Confidence 999999999999999999998999999999999999999999999999999999999999876544433332 2336
Q ss_pred eeEEEeCCCCCE-EEEEe--cCCcEEEEEcccceEE-EeecCcCCCCCCCeeEEEECC-CCCeEEeeeCCCeeEE
Q 016458 300 VTSIAFSISGRL-LFAGY--SNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKV 369 (389)
Q Consensus 300 i~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 369 (389)
+.++.|-|..++ |++++ .|-.|+|||++..-.. .++ ..|...++.++|.. |...|.+++.||+|..
T Consensus 266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~----~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF----LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eeeeeeccCccchhhhhhccccceEEEEeeccccccceee----eccCccccceeccCCCceeeEeecCccHHHH
Confidence 999999998775 44443 3678999999865443 444 78999999999975 6678999999999875
No 91
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-31 Score=224.36 Aligned_cols=285 Identities=26% Similarity=0.423 Sum_probs=236.0
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee--EEEeeCCCcEEE-EEECC-CCcEEEEecCCC
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT--HAIKLPCAWVMT-CAFSP-TGQSVACGGLDS 131 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg 131 (389)
..+..+.+.||+..|..+++.+.. .++++|.||++++|+-...+.+ ..+..|.+.|.. +++.+ ++-.+++|+.|.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 346778999999999999987654 8999999999999997655544 345667777776 78875 555699999999
Q ss_pred cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeE
Q 016458 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 211 (389)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 211 (389)
.|.+|...+.. ....+++|...|.++....++ .+++|+.|.++++|-+.. +...+ .+|...|.+
T Consensus 82 ~i~v~~~~~~~-------P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~--l~~~l-----~gH~asVWA 145 (745)
T KOG0301|consen 82 TIIVFKLSQAE-------PLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE--LVYSL-----QGHTASVWA 145 (745)
T ss_pred eEEEEecCCCC-------chhhhhccccceeeeecCCcC--ceEecccccceEEecchh--hhccc-----CCcchheee
Confidence 99999998755 678899999999999988765 399999999999998654 33445 799999999
Q ss_pred EEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeecc
Q 016458 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (389)
Q Consensus 212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 291 (389)
+...| .+ .+++|+.|.+|++|.-. ..++++.+|...|+.+++-+++ .|++++.||.|+.|++ ++..+..+..+
T Consensus 146 v~~l~-e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~gh 218 (745)
T KOG0301|consen 146 VASLP-EN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGH 218 (745)
T ss_pred eeecC-CC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeecc
Confidence 99998 44 88999999999999863 7889999999999999999764 5889999999999999 67777776554
Q ss_pred CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEee
Q 016458 292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNL 371 (389)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~ 371 (389)
.. .+.++...+++..++++++|++++||+.. .....+ ......|.++.+-++|. +++|++||.|+|
T Consensus 219 tn-----~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I----~lPttsiWsa~~L~NgD-Ivvg~SDG~VrV-- 284 (745)
T KOG0301|consen 219 TN-----FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI----TLPTTSIWSAKVLLNGD-IVVGGSDGRVRV-- 284 (745)
T ss_pred ce-----EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE----ecCccceEEEEEeeCCC-EEEeccCceEEE--
Confidence 43 48999988888999999999999999976 555555 33445899999888886 788999999999
Q ss_pred cceecccCc
Q 016458 372 GFWRVQEGA 380 (389)
Q Consensus 372 ~~W~~~~~~ 380 (389)
|.....+
T Consensus 285 --fT~~k~R 291 (745)
T KOG0301|consen 285 --FTVDKDR 291 (745)
T ss_pred --EEecccc
Confidence 8877543
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-32 Score=201.84 Aligned_cols=280 Identities=18% Similarity=0.241 Sum_probs=222.2
Q ss_pred cccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC
Q 016458 40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119 (389)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 119 (389)
.++-..+..|..|-..+...+-++.||+++|.|++.+.+.+.|+||+.|.++++||+++|+.+..++.. .+|..+.|++
T Consensus 25 lFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~ 103 (327)
T KOG0643|consen 25 LFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSF 103 (327)
T ss_pred EEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeecc
Confidence 345566788889999999999999999999999999999999999999999999999999999998866 5699999999
Q ss_pred CCcEEEEecC-----CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE
Q 016458 120 TGQSVACGGL-----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194 (389)
Q Consensus 120 ~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 194 (389)
+|++++.... .+.|.++|++..........+...+..+.+.++.+.|.|-+ ..+++|..||.|.+||++++...
T Consensus 104 ~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~ 182 (327)
T KOG0643|consen 104 GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKEL 182 (327)
T ss_pred CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCcee
Confidence 9998887644 46799999986543222333455666677899999999997 78999999999999999998554
Q ss_pred EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCe-
Q 016458 195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT- 273 (389)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~- 273 (389)
.... ..|...|+.+.+++ +..++++++.|.+-++||.++. ..++++. ...||++.+++|....++.|+....
T Consensus 183 v~s~----~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl-~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 183 VDSD----EEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTL-EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred eech----hhhccccccccccC-CcceEEecccCccceeeeccce-eeEEEee-ecccccceecccccceEEecCCceee
Confidence 4432 57888999999999 8899999999999999999987 6666665 5779999999997777666653222
Q ss_pred -EEEEECCCCceeeEe-------eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 274 -CRLFDIRTGHQLQVY-------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 274 -i~i~d~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
|.--+.+.++-...+ ....-..|.++|++++|+|+|+..++|+.||.|++.....
T Consensus 256 dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 222222222211111 1111235666799999999999999999999999986543
No 93
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-31 Score=202.95 Aligned_cols=266 Identities=21% Similarity=0.300 Sum_probs=215.4
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc--EEEEecCCCcE
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ--SVACGGLDSVC 133 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i 133 (389)
.+.+...+.+|.++|++++.+ +.++|+|+.|-+|+|||+.+......+-.|.+.|+++.|.+.-. .|++|+.||.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 456677899999999999985 67999999999999999999999999999999999999998765 89999999999
Q ss_pred EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
.+|+... +.....+++|.+.|+.++.+|.+ ++.++.+.|+.++.||+-+|+.....+ -....+.+.
T Consensus 110 ~iw~~~~-------W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~------L~~~at~v~ 175 (362)
T KOG0294|consen 110 IIWRVGS-------WELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLN------LKNKATLVS 175 (362)
T ss_pred EEEEcCC-------eEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeec------cCCcceeeE
Confidence 9999875 45889999999999999999998 789999999999999999998777663 223345599
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (389)
|+| .+.+++.+..+ .|-+|.+.+. .....+. ....+.++.|. ++..|++|+.|+.|.+||..+..+...+..+..
T Consensus 176 w~~-~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~ 250 (362)
T KOG0294|consen 176 WSP-QGDHFVVSGRN-KIDIYQLDNA-SVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN 250 (362)
T ss_pred EcC-CCCEEEEEecc-EEEEEecccH-hHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh
Confidence 998 77777776654 6889988865 3333332 22446677775 677899999999999999998888877766554
Q ss_pred CCCCCCeeEEEe--CCCCCEEEEEecCCcEEEEEcccc-----eEEEeecCcCCCCCCCeeEEEEC
Q 016458 294 ENEIPHVTSIAF--SISGRLLFAGYSNGDCYVWDTLLA-----KVVLNLGSLQNSHEGRITCLGLS 352 (389)
Q Consensus 294 ~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~v~~~~~~ 352 (389)
. |.++.+ .|++.+|+++++||.|+|||++.. +.+..+ .....++|+...
T Consensus 251 R-----VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~-----n~~~RltCl~~~ 306 (362)
T KOG0294|consen 251 R-----VKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAEL-----NTNVRLTCLRVK 306 (362)
T ss_pred h-----eeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEe-----ecCCccceeeeh
Confidence 3 888774 467889999999999999999765 344444 225567776654
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-31 Score=224.49 Aligned_cols=258 Identities=16% Similarity=0.294 Sum_probs=221.9
Q ss_pred ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee-CCCcEEEEEECCCCcEEEEecC
Q 016458 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGL 129 (389)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 129 (389)
.|+...........-+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |...|.+++|. +..+.+|+.
T Consensus 201 lW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr 278 (484)
T KOG0305|consen 201 LWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSR 278 (484)
T ss_pred EEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecC
Confidence 455555554444444588999999999999999999999999999999999999998 89999999997 788999999
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 209 (389)
++.|..+|++.... ....+.+|...|..+.|++++ .++++|+.|+.+.|||.........+ ..|...|
T Consensus 279 ~~~I~~~dvR~~~~------~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~-----~~H~aAV 346 (484)
T KOG0305|consen 279 DGKILNHDVRISQH------VVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTF-----TEHTAAV 346 (484)
T ss_pred CCcEEEEEEecchh------hhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEE-----eccceee
Confidence 99999999998552 222488999999999999998 79999999999999999888888888 7999999
Q ss_pred eEEEeeCCCCcEEEEee--CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEECCCCcee
Q 016458 210 LSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQL 285 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~ 285 (389)
.+++|+|....+||+|+ .|+.|++||..++ ..+.... ....|..+.|++..+-|+++. .++.|.||+..+.+.+
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~ 424 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV 424 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee
Confidence 99999999999999865 6999999999977 5555554 467899999999887777654 5678999999998888
Q ss_pred eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (389)
..+..+.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 425 ~~l~gH~~-----RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 425 AELLGHTS-----RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeecCCcc-----eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 87766554 4999999999999999999999999998654
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-30 Score=224.60 Aligned_cols=325 Identities=17% Similarity=0.254 Sum_probs=266.9
Q ss_pred ccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc
Q 016458 43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (389)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (389)
.++.+....|.....+.+.+++++...|+++.=+|--..+|.|..+|+|.++|+..++.+.+++...+.|+.+.|..||.
T Consensus 178 Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~ 257 (910)
T KOG1539|consen 178 GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN 257 (910)
T ss_pred eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC
Confidence 35556667888899999999999999999999999888999999999999999999999999998889999999999987
Q ss_pred E-EEEecCCCcEEEEeCCCCCC----------------------------------------CCCCCcceeeecccccce
Q 016458 123 S-VACGGLDSVCSIFNLNSPTD----------------------------------------KDGNLPVSRMLSGHKGYV 161 (389)
Q Consensus 123 ~-l~~~~~dg~i~vw~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~v 161 (389)
. +++|+..|.+.+||++..+. .++.....+.-.+|..+.
T Consensus 258 p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 258 PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP 337 (910)
T ss_pred eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence 5 56677779999999997541 011112334456788899
Q ss_pred EEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-------e--------eE--------------------------------
Q 016458 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTG-------L--------RT-------------------------------- 194 (389)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~--------~~-------------------------------- 194 (389)
.|+.|.......+.+++.|++++.+++... + ..
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA 417 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence 999998655578888988888877765321 0 00
Q ss_pred -------------------EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE---eeeccc
Q 016458 195 -------------------SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---HGHEGD 252 (389)
Q Consensus 195 -------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~ 252 (389)
..+...........+++++.++ .+++.+.|+..|.|-+|++.++ .....+ ..|.++
T Consensus 418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG-i~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG-IHRKSFGDSPAHKGE 495 (910)
T ss_pred ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC-eeecccccCccccCc
Confidence 0000000011335688899998 8999999999999999999987 555555 579999
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (389)
Q Consensus 253 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (389)
|+.++...-++.+++++.+|.+.+||......+..+..... +..+..+.....++++..|-.|+++|..+.+..
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~------~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv 569 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS------ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV 569 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC------cceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence 99999998889999999999999999998876666655443 788888888889999999999999999999999
Q ss_pred EeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 333 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
+.+ .+|.+.|++++|||||++|++++.|++|++ ||+.+|.+..
T Consensus 570 R~f----~gh~nritd~~FS~DgrWlisasmD~tIr~----wDlpt~~lID 612 (910)
T KOG1539|consen 570 REF----WGHGNRITDMTFSPDGRWLISASMDSTIRT----WDLPTGTLID 612 (910)
T ss_pred HHh----hccccceeeeEeCCCCcEEEEeecCCcEEE----EeccCcceee
Confidence 999 899999999999999999999999999999 9999998864
No 96
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-30 Score=199.04 Aligned_cols=266 Identities=18% Similarity=0.300 Sum_probs=215.7
Q ss_pred eEEEEecCCcEEEEeCCCC------------CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458 81 RIVSASQDGRLIVWNALTS------------QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (389)
Q Consensus 81 ~l~~~~~dg~v~iw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (389)
.+++|+....|.=+++... .++..+..|.+++++++. ++.++++|+.|-+|+|||+....
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~------ 74 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK------ 74 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh------
Confidence 3566776666655554321 235566789999999998 58999999999999999998755
Q ss_pred cceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458 149 PVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (389)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (389)
....+..|.+.|+++.|.+.. ...|++|+.||.|.+|+...-..+..+ ..|...|+.++++| .+++.++.+.
T Consensus 75 -qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl-----K~H~~~Vt~lsiHP-S~KLALsVg~ 147 (362)
T KOG0294|consen 75 -QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL-----KAHKGQVTDLSIHP-SGKLALSVGG 147 (362)
T ss_pred -hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee-----cccccccceeEecC-CCceEEEEcC
Confidence 456777899999999999864 137999999999999999999998888 78999999999999 8899999999
Q ss_pred CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458 228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (389)
Q Consensus 228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (389)
|+.+++||+-.+. .-..+.- ....+.+.|+|.|.+++.++.+ .|-+|.+.+......+.... .+.++.|-
T Consensus 148 D~~lr~WNLV~Gr-~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~------r~l~~~~l- 217 (362)
T KOG0294|consen 148 DQVLRTWNLVRGR-VAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPK------RILCATFL- 217 (362)
T ss_pred CceeeeehhhcCc-cceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccc------cceeeeec-
Confidence 9999999998773 3222221 2223449999999999988876 68999998876666554432 25666664
Q ss_pred CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEE--CCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 308 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 308 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
++.+|++|..|+.|.+||..+..+...+ .+|..+|.++.+ .|++.+|+|+++||.|+| ||++..
T Consensus 218 ~~~~L~vG~d~~~i~~~D~ds~~~~~~~----~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v----Wd~~~~ 283 (362)
T KOG0294|consen 218 DGSELLVGGDNEWISLKDTDSDTPLTEF----LAHENRVKDIASYTNPEHEYLVTASSDGFIKV----WDIDME 283 (362)
T ss_pred CCceEEEecCCceEEEeccCCCccceee----ecchhheeeeEEEecCCceEEEEeccCceEEE----EEcccc
Confidence 6779999999999999999998888888 899999999984 467899999999999999 999876
No 97
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=213.91 Aligned_cols=269 Identities=20% Similarity=0.302 Sum_probs=227.7
Q ss_pred ccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC
Q 016458 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (389)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (389)
.+++.++....|+..+..+.++|++|.+.|..|++.. ..+++++.|.+|+.|.+.- .+.+++.+. ..+..+.-+..
T Consensus 83 aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~-s~~~gIdh~~~ 158 (433)
T KOG0268|consen 83 ASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK-SVYLGIDHHRK 158 (433)
T ss_pred hccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc-ccccccccccc
Confidence 3456677788999999999999999999999999987 5889999999999999765 355555544 44777777777
Q ss_pred CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (389)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 200 (389)
+..++++|.+ |.|||..... +...+.--...|.++.|+|....+|++++.|+.|.+||++++.++...
T Consensus 159 ~~~FaTcGe~--i~IWD~~R~~-------Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV--- 226 (433)
T KOG0268|consen 159 NSVFATCGEQ--IDIWDEQRDN-------PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV--- 226 (433)
T ss_pred cccccccCce--eeecccccCC-------ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee---
Confidence 8889998764 9999987643 455666666789999999998888999999999999999999888776
Q ss_pred ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (389)
.....-+.++|+| +...|++|++|..++.||++....++....+|.+.|.+++|+|.|+-+++|+.|.+|+||..+
T Consensus 227 ---i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 227 ---ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred ---eeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence 3455678899999 888999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEE
Q 016458 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 333 (389)
.+.....+..... ..|.++.||.|.+|+++|+.|+.|++|.....+.+.
T Consensus 303 ~~~SRdiYhtkRM----q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 303 HGHSRDIYHTKRM----QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred CCcchhhhhHhhh----heeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 8876655533222 249999999999999999999999999876554443
No 98
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-30 Score=209.25 Aligned_cols=286 Identities=17% Similarity=0.281 Sum_probs=232.8
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCC--CCCeeEEEeeCCCcEEEEEECCCCc-EEEEecCCCcEEEEeCCCCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTD 143 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~ 143 (389)
.++|++|.|+|....|++|+.||+++||.+. ....++.+.....+|.+++|.|+|. .+++++.....+.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3579999999999999999999999999764 3456777888889999999999998 889999999999999987542
Q ss_pred CCCCCcceeeecccc-cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458 144 KDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (389)
Q Consensus 144 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (389)
.......++. ..+.....++++ ++++..+..|.|.+....+++.+..+ ...+.|..++|+. ++..|
T Consensus 293 -----~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~------KieG~v~~~~fsS-dsk~l 359 (514)
T KOG2055|consen 293 -----TKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSF------KIEGVVSDFTFSS-DSKEL 359 (514)
T ss_pred -----ccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhhee------eeccEEeeEEEec-CCcEE
Confidence 1223333333 356667788987 79999999999999999999988887 4667899999997 77888
Q ss_pred EEeeCCCceEEEeCCCCCcceeEEeeeccce--EEEEEecCCCEEEEEecCCeEEEEECCC------CceeeEeeccCCC
Q 016458 223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDV--NTVKFFPDGNRFGTGSDDGTCRLFDIRT------GHQLQVYYQQHGE 294 (389)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~ 294 (389)
++++.+|.|.+||++.. .++..+.. .+.| ++++.++++.+||+|+..|.|.|||..+ .+++..+.
T Consensus 360 ~~~~~~GeV~v~nl~~~-~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d----- 432 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQN-SCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD----- 432 (514)
T ss_pred EEEcCCceEEEEecCCc-ceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-----
Confidence 88888999999999988 77777764 3333 5677788999999999999999999654 22333322
Q ss_pred CCCCCeeEEEeCCCCCEEEEEec--CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeec
Q 016458 295 NEIPHVTSIAFSISGRLLFAGYS--NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLG 372 (389)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~ 372 (389)
+-...|+++.|++|++.||.++. +..+++-.+.+......++.. ...-+.|+||+|+|.|.+||.|..+|.+.+
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-n~~vg~vtc~aFSP~sG~lAvGNe~grv~l--- 508 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-NTKVGHVTCMAFSPNSGYLAVGNEAGRVHL--- 508 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-CCcccceEEEEecCCCceEEeecCCCceee---
Confidence 22335999999999999988765 568999999888888777543 344568999999999999999999999999
Q ss_pred ceecc
Q 016458 373 FWRVQ 377 (389)
Q Consensus 373 ~W~~~ 377 (389)
|.+.
T Consensus 509 -~kL~ 512 (514)
T KOG2055|consen 509 -FKLH 512 (514)
T ss_pred -Eeec
Confidence 9875
No 99
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-30 Score=221.33 Aligned_cols=298 Identities=19% Similarity=0.296 Sum_probs=237.7
Q ss_pred eeeecccccCcEEEEEEcCC-----------CCeEEEEecCCcEEEEeCCCCCeeEEE----------------------
Q 016458 59 CCRTLQGHAGKVYSLDWTSE-----------RNRIVSASQDGRLIVWNALTSQKTHAI---------------------- 105 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~-----------~~~l~~~~~dg~v~iw~~~~~~~~~~~---------------------- 105 (389)
.+..+.-|...|+.+.--|- ...+.|++.|++|++||+..+..-..+
T Consensus 361 k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 361 KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 34445557777777766551 135899999999999998653211110
Q ss_pred ---------------eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC-
Q 016458 106 ---------------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD- 169 (389)
Q Consensus 106 ---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 169 (389)
-...-.+.+++.+|+|++||+|..-|.++||++.... ....+..|...|.|+.|+..
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-------~~~~~eAHesEilcLeyS~p~ 513 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-------YTCFMEAHESEILCLEYSFPV 513 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-------hhhheecccceeEEEeecCch
Confidence 0112358999999999999999999999999998633 56778899999999999863
Q ss_pred -CCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCCCCCeeEEEeeCCC-CcEEEEeeCCCceEEEeCCCCCcceeEE
Q 016458 170 -EDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTF 246 (389)
Q Consensus 170 -~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 246 (389)
+.++|++++.|..|.+||..... .+..+ .+|...|+++.|.-.+ +..+++++.|..|.+--.+.. .....+
T Consensus 514 ~~~kLLASasrdRlIHV~Dv~rny~l~qtl-----d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~-~~g~~f 587 (1080)
T KOG1408|consen 514 LTNKLLASASRDRLIHVYDVKRNYDLVQTL-----DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA-SSGRLF 587 (1080)
T ss_pred hhhHhhhhccCCceEEEEecccccchhhhh-----cccccceeEEEEeecCCceEEEeccCchhhheehhccc-cCceec
Confidence 33689999999999999987653 34444 7899999999998633 256788888887765433322 222222
Q ss_pred eee-----ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcE
Q 016458 247 HGH-----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC 321 (389)
Q Consensus 247 ~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (389)
..| ...+..++..|..+++++++.|..|+|||+.+++....|...+.. .+....+...|.|.||++.+.|.++
T Consensus 588 ~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~--eG~lIKv~lDPSgiY~atScsdktl 665 (1080)
T KOG1408|consen 588 PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH--EGDLIKVILDPSGIYLATSCSDKTL 665 (1080)
T ss_pred cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC--CCceEEEEECCCccEEEEeecCCce
Confidence 222 346889999999999999999999999999999999999876543 3457889999999999999999999
Q ss_pred EEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
.++|+.+++.+... .+|...|+.+.|.+|.+.|++.+.||.|.| |.+...
T Consensus 666 ~~~Df~sgEcvA~m----~GHsE~VTG~kF~nDCkHlISvsgDgCIFv----W~lp~~ 715 (1080)
T KOG1408|consen 666 CFVDFVSGECVAQM----TGHSEAVTGVKFLNDCKHLISVSGDGCIFV----WKLPLT 715 (1080)
T ss_pred EEEEeccchhhhhh----cCcchheeeeeecccchhheeecCCceEEE----EECchh
Confidence 99999999999999 899999999999999999999999999999 998753
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=5.1e-31 Score=212.09 Aligned_cols=264 Identities=22% Similarity=0.313 Sum_probs=208.1
Q ss_pred eCCCcEEEEEECCCC-cEEEEecCCCcEEEEeCCCCCCCCC---CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458 107 LPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDG---NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (389)
Q Consensus 107 ~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (389)
.|.+.|+.+.+.|+. ..+++.+..+.|.|||......... .......+.+|...-.+++|++.....+++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 477889999999955 5667778899999999987442221 334556788999988999999988889999999999
Q ss_pred EEEEeCCCCeeE--EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC-CCcceeEEeeeccceEEEEEe
Q 016458 183 CVLWDITTGLRT--SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASRAVRTFHGHEGDVNTVKFF 259 (389)
Q Consensus 183 i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~~~~~ 259 (389)
|++||+...... ...+.....+|...|..++|++.+..+|++++.|+.+.|||+|+ ..++.....+|.++|.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 999999865431 11111122789999999999999999999999999999999996 336777888999999999999
Q ss_pred c-CCCEEEEEecCCeEEEEECCCCce-eeEeeccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEE---
Q 016458 260 P-DGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVL--- 333 (389)
Q Consensus 260 ~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~--- 333 (389)
| ++..||+|+.|++|.+||+|+... +..+ ..+...|.++.|+|.. ..||+++.|+.+.|||+..-....
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~-----e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTF-----EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceec-----cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 9 677889999999999999998654 2333 3344469999999975 488889999999999986421111
Q ss_pred -------eecCcCCCCCCCeeEEEECCCC-CeEEeeeCCCeeEEeecceecccC
Q 016458 334 -------NLGSLQNSHEGRITCLGLSADG-SALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 334 -------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
.+.....+|...|..+.|+|+. ..+++++.|+.+.| |++...
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI----W~~s~~ 406 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI----WQMAEN 406 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE----eecccc
Confidence 1111127899999999999965 46788999999999 998743
No 101
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.1e-30 Score=195.94 Aligned_cols=290 Identities=22% Similarity=0.328 Sum_probs=225.6
Q ss_pred ccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCe----------eE-----EEeeCCCcEEEEEECC-CCcEEEE
Q 016458 64 QGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQK----------TH-----AIKLPCAWVMTCAFSP-TGQSVAC 126 (389)
Q Consensus 64 ~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~----------~~-----~~~~~~~~v~~~~~~~-~~~~l~~ 126 (389)
+-|.+.|+++...+ .|+++++|+.||.|.+||++.... .. .-..|.-.|..+.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999998 788999999999999999976431 11 1124566799999999 6778889
Q ss_pred ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC--CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG 204 (389)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 204 (389)
++.|.+++|||.++.+ ....+ ...+.|..-+++|-. ..++++|..+-.|++.|+.+|.....+ .+
T Consensus 120 sSFDhtlKVWDtnTlQ-------~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L-----sG 186 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQ-------EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL-----SG 186 (397)
T ss_pred ccccceEEEeecccce-------eeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee-----cc
Confidence 9999999999998844 22222 234566666777642 246788888999999999999999999 89
Q ss_pred CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE--------------eeeccceEEEEEecCCCEEEEEec
Q 016458 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--------------HGHEGDVNTVKFFPDGNRFGTGSD 270 (389)
Q Consensus 205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~~ 270 (389)
|...|.++.|+|...-.|++|+.||.|++||++....++..+ .+|.+.+..++|..++.++++++.
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 999999999999888899999999999999998653333333 456778999999999999999999
Q ss_pred CCeEEEEECCCCceeeEeeccCCCCCC--CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeE
Q 016458 271 DGTCRLFDIRTGHQLQVYYQQHGENEI--PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (389)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (389)
|..+++|+...|+....-......+.. ..+. +. +.+...++.--.++.+.++++-.+..+..+ ..|...|.|
T Consensus 267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l----~~h~k~i~c 340 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL----STHLKRINC 340 (397)
T ss_pred ccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee----ecccceeeE
Confidence 999999999887654332221111110 0111 22 333334444445689999999999999999 789889999
Q ss_pred EEECCCCCeEEeeeCCCeeEEeecceec
Q 016458 349 LGLSADGSALCTGSWDTNLKVNLGFWRV 376 (389)
Q Consensus 349 ~~~~~~~~~l~~~~~dg~i~i~~~~W~~ 376 (389)
.++-|+-+...+|..|+.+.. |-.
T Consensus 341 ~~~~~~fq~~~tg~~d~ni~~----w~p 364 (397)
T KOG4283|consen 341 AAYRPDFEQCFTGDMNGNIYM----WSP 364 (397)
T ss_pred EeecCchhhhhccccCCcccc----ccc
Confidence 999999999999999999999 876
No 102
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=100.00 E-value=5.3e-31 Score=214.70 Aligned_cols=282 Identities=19% Similarity=0.369 Sum_probs=233.9
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---eeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (389)
.|..-|.++..|...++++||+. |.|+|||+.... ++..+. .....+.++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58889999999999999999986 689999986432 233332 234679999999999999999999999999999
Q ss_pred CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
.+... +...+....-.+..++.+||. ++.+++..||.|.|||+.+...+..+ .+|.+.+.||.+++ ++
T Consensus 496 apTpr-----ikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~Vrqf-----qGhtDGascIdis~-dG 563 (705)
T KOG0639|consen 496 APTPR-----IKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQF-----QGHTDGASCIDISK-DG 563 (705)
T ss_pred CCCcc-----hhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecc-----cCCCCCceeEEecC-CC
Confidence 85421 223333444567889999997 78999999999999999999999999 89999999999998 88
Q ss_pred cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
..|-+|+-|.+|+.||++.. ..+.... ....|.++.++|++.++++|-.++.+.+-....... ..+.. +...
T Consensus 564 tklWTGGlDntvRcWDlreg-rqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlhl-----heSc 635 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREG-RQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLHL-----HESC 635 (705)
T ss_pred ceeecCCCccceeehhhhhh-hhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc-eeecc-----cccE
Confidence 89999999999999999987 3333322 456799999999999999999999998888664333 22322 2335
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceec
Q 016458 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRV 376 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~ 376 (389)
|.++.|.+.|+++++.+.|+.+..|...-|..+... ...++|.+..++.|.++++||+.|....| |.+
T Consensus 636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-----kE~SsVlsCDIS~ddkyIVTGSGdkkATV----YeV 703 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISFDDKYIVTGSGDKKATV----YEV 703 (705)
T ss_pred EEEEEecccCceeeecCchhhhhhccCccccceeec-----cccCcceeeeeccCceEEEecCCCcceEE----EEE
Confidence 999999999999999999999999999988888776 46778999999999999999999998888 654
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=5.8e-31 Score=214.97 Aligned_cols=259 Identities=20% Similarity=0.233 Sum_probs=197.8
Q ss_pred CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC
Q 016458 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179 (389)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 179 (389)
.....+++|...|.++++.|.|..|++|+.|..|++||+........... .........|.++.|++.+ ..|++.+.
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr--~l~P~E~h~i~sl~ys~Tg-~~iLvvsg 234 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR--QLQPCETHQINSLQYSVTG-DQILVVSG 234 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhh--ccCcccccccceeeecCCC-CeEEEEec
Confidence 34455677888899999999999999999999999999987543222211 2223345579999999998 46777777
Q ss_pred CCeEEEEeCCCCeeEEEecC-------cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee----
Q 016458 180 DQTCVLWDITTGLRTSVFGG-------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---- 248 (389)
Q Consensus 180 dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 248 (389)
....+++|-........... ...++|...+++.+|+|.+...|++++.||++++||+.........+..
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 78899999765544443322 2346899999999999999999999999999999999987665555542
Q ss_pred -eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 249 -HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 249 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
..-+++.++|+|++++||+|+.||.|.+|+.........+.....+.....|+++.||+||++|++-+.|+.+++||++
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 2347899999999999999999999999998665443333333333333469999999999999999999999999998
Q ss_pred cce-EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458 328 LAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 328 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
..+ ++.....+ ....+-+.++|||+.++|++|..
T Consensus 395 q~kkpL~~~tgL--~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 395 QFKKPLNVRTGL--PTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ccccchhhhcCC--CccCCCCccccCCCceEEEeccc
Confidence 754 34333221 22235678999999999999864
No 104
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=1.6e-30 Score=230.32 Aligned_cols=258 Identities=19% Similarity=0.266 Sum_probs=216.0
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC------------------CCeeEEEeeCCCcEEEEEEC
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT------------------SQKTHAIKLPCAWVMTCAFS 118 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~------------------~~~~~~~~~~~~~v~~~~~~ 118 (389)
.+.+.+...|.+.|+|+.|+|||++||+|+.|+.|.||.... .+....+.+|...|..++|+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 345567788999999999999999999999999999998762 13567788999999999999
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (389)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 198 (389)
|++.+|++++.|++|.+|+..+. .....+.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+-.....+.
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF-------~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTF-------ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred CCccEEEEecccceEEEEccccc-------eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeec
Confidence 99999999999999999999874 3788999999999999999998 899999999999999987766666664
Q ss_pred Cccc-CCCCCCeeEEEeeCCCCcEEEEeeC----CCceEEEeCCCCCcceeEEeeeccceEEEEEecC-----CC-----
Q 016458 199 GEFQ-SGHTADVLSVSISGSNSRMFVSGSC----DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-----GN----- 263 (389)
Q Consensus 199 ~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~----- 263 (389)
..+. ......+..+.|+| ++++|++... -..+.|.+-.+. +.-..+-+|.+++.++.|+|. .+
T Consensus 211 ~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred cchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 4332 33445688999999 8889887543 346778876544 666788899999999999981 12
Q ss_pred -------EEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 264 -------RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 264 -------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
.+|+|+.|++|.||.....+++......... .|.+++|+|||..|++++.||+|.++.++.
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~----SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK----SIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC----ceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 6789999999999999887777666443332 599999999999999999999999998764
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=4.8e-30 Score=205.29 Aligned_cols=256 Identities=20% Similarity=0.304 Sum_probs=215.2
Q ss_pred ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC
Q 016458 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD 130 (389)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 130 (389)
.++-+.-+.+..|+||...|+.+.|+|+...+++++.|..|+||.............|.++|+.+..+|.|.||++++.|
T Consensus 245 ~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d 324 (506)
T KOG0289|consen 245 LFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASND 324 (506)
T ss_pred EEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCC
Confidence 44555567778999999999999999999999999999999999998888888889999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeec--ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 208 (389)
|.....|++++. ...... ...-.+++.+|+||| .+|.+|..||.|+|||+.++.....| .+|.++
T Consensus 325 ~~w~Fsd~~~g~-------~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~F-----pght~~ 391 (506)
T KOG0289|consen 325 GTWAFSDISSGS-------QLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKF-----PGHTGP 391 (506)
T ss_pred ceEEEEEccCCc-------EEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccC-----CCCCCc
Confidence 999999998854 222221 223458999999998 78999999999999999999999988 789999
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee-ccceEEEEEecCCCEEEEEecCCeEEEEECCC--Ccee
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT--GHQL 285 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~ 285 (389)
|..++|+. ++.+|++++.|+.|++||+|.. +.+.++... ...+.++.|.+.|.+|+.++.|=.|++++-.+ ...+
T Consensus 392 vk~i~FsE-NGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 392 VKAISFSE-NGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred eeEEEecc-CceEEEEEecCCeEEEEEehhh-cccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence 99999997 9999999999999999999987 555555433 33699999999999999998887777776433 3344
Q ss_pred eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
..+..+. +..+.+.|....+++++++.|..++++.+
T Consensus 470 ~~~~~~s-----g~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADHS-----GLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhcc-----cccceeeecccceEEeeccchhheEEeec
Confidence 4443333 34788999999999999999998888754
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=5.3e-29 Score=183.05 Aligned_cols=259 Identities=20% Similarity=0.312 Sum_probs=202.6
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-----eeEEEeeCCCcEEEEEECC----CCcEEEEe
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPCAWVMTCAFSP----TGQSVACG 127 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~----~~~~l~~~ 127 (389)
...++.-+.|++.|.|.+|+|+|.++++|+.|.+|++..+.... ....+..|.+.|..++|.. .+..|+++
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 34556678899999999999999999999999999997654322 2345778899999999954 34566665
Q ss_pred cC-CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC--
Q 016458 128 GL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG-- 204 (389)
Q Consensus 128 ~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-- 204 (389)
+. |-.|++-|...++ ....+.+|.+-|.++- +-++ .++++|+.|.+|++||++-..++..+...+..+
T Consensus 159 gagdc~iy~tdc~~g~-------~~~a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQ-------GFHALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL 229 (350)
T ss_pred CCCcceEEEeecCCCC-------cceeecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence 43 4455555555544 5677889999998763 3333 789999999999999999998888875433221
Q ss_pred CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (389)
Q Consensus 205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (389)
..+.|.++++.| .+++|++|-.|....+||++.+ +.++.+.+|...|.++.|+|...++++++.|..|++-|+... .
T Consensus 230 essavaav~vdp-sgrll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-l 306 (350)
T KOG0641|consen 230 ESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-L 306 (350)
T ss_pred ccceeEEEEECC-CcceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc-h
Confidence 236789999999 8999999999999999999987 899999999999999999999999999999999999998642 2
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
...+..--...+...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 307 a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 307 AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 2111111112223347888999999889999999999999763
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=6.8e-31 Score=194.83 Aligned_cols=257 Identities=19% Similarity=0.248 Sum_probs=204.7
Q ss_pred cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC---CeeEEEeeCCCcEEEEEECC--CCcEEEEecCCCcEEEEe
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIFN 137 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw~ 137 (389)
-..|.+.|..+...-.|++|||++.|++|+||...+. ..+..+.+|.++|..++|.. .|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4579999999999999999999999999999998765 45788899999999999965 899999999999999999
Q ss_pred CCCCCCCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
-.++ .+........|...|++++|.|.+ .-.|++++.||.|.+.+.+....-.. ......|.-.|++++|.|
T Consensus 87 e~~g-----~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t--~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 87 EENG-----RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT--SKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred cCCC-----chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc--hhhhhccccccceeeecC
Confidence 8874 344566677899999999999974 24688999999999999876511111 112267999999999998
Q ss_pred CC--C-----------cEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEEEEEecCC----CEEEEEecCCeEEEEE
Q 016458 217 SN--S-----------RMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGTCRLFD 278 (389)
Q Consensus 217 ~~--~-----------~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d 278 (389)
.. + +.|++|+.|..|+||+..+.. ..-..+.+|...|+.++|.|.- .+|+++++||++.||.
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 41 1 469999999999999998752 2334588999999999999943 5799999999999998
Q ss_pred CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
.+........... ......+..+.||+.|+.|++++.|+.|.+|.-..
T Consensus 240 ~~~e~e~wk~tll--~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 240 KDEEYEPWKKTLL--EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ecCccCccccccc--ccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 7643222111111 11222489999999999999999999999997543
No 108
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=1.1e-30 Score=200.42 Aligned_cols=265 Identities=22% Similarity=0.324 Sum_probs=209.0
Q ss_pred eEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC-----------CCCCCCCcceeeecccccceEEEEEeeCC
Q 016458 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP-----------TDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170 (389)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (389)
...+..|.+++.+.+|++||.++++|+.|..|+|.|++.. .......++++++..|..+|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3456778999999999999999999999999999998831 12233457889999999999999999986
Q ss_pred CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE---e
Q 016458 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---H 247 (389)
Q Consensus 171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~ 247 (389)
.+|++|+.|++|++||+........++. .....+|.++.|+| .+.++++|+.-..+++||+++. ++...- .
T Consensus 185 -~ILiS~srD~tvKlFDfsK~saKrA~K~---~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~-QcfvsanPd~ 258 (430)
T KOG0640|consen 185 -TILISGSRDNTVKLFDFSKTSAKRAFKV---FQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDD 258 (430)
T ss_pred -heEEeccCCCeEEEEecccHHHHHHHHH---hhccceeeeEeecC-CCceEEEecCCCceeEEeccce-eEeeecCccc
Confidence 8999999999999999987544333311 23456899999999 8999999999999999999987 444332 3
Q ss_pred eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 248 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
.|.+.|+++.+++.+++.++++.||.|++||--+++++..+...++. ..|++..|..+|+|+++.+.|..+++|.+.
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g---sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG---SEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC---ceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 58889999999999999999999999999999999999888775543 359999999999999999999999999999
Q ss_pred cceEEEeecCcC-CCCCCCeeEEEECCCCCeEEeeeC-CCeeEEeecceecccC
Q 016458 328 LAKVVLNLGSLQ-NSHEGRITCLGLSADGSALCTGSW-DTNLKVNLGFWRVQEG 379 (389)
Q Consensus 328 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~W~~~~~ 379 (389)
+++.+......- .+....-+...|.....|++.-.. .+.+.- ||-.++
T Consensus 336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcs----WdaRta 385 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCS----WDARTA 385 (430)
T ss_pred CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceee----ccccch
Confidence 999998875310 011112233445555555554332 344555 666655
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=2.4e-29 Score=218.93 Aligned_cols=278 Identities=15% Similarity=0.270 Sum_probs=227.8
Q ss_pred ccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC-CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS-QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (389)
Q Consensus 64 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (389)
.+|+..-+.|+|.|+|++|++++.||.|++|+.... +....+..+...|.+++- .+.+|++|+.+++|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 379999999999999999999999999999987665 444555546677877776 45599999999999999998865
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (389)
....+....-++.+++|+.+| .+++.|+.|-.|++.+..+......+ .+|..+|.++.++| ++++|
T Consensus 88 -------~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~l-----rgh~apVl~l~~~p-~~~fL 153 (933)
T KOG1274|consen 88 -------EDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVL-----RGHDAPVLQLSYDP-KGNFL 153 (933)
T ss_pred -------ccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheee-----cccCCceeeeeEcC-CCCEE
Confidence 233445556789999999998 78999999999999999999888888 79999999999999 99999
Q ss_pred EEeeCCCceEEEeCCCCCcceeEEee-------e-ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC
Q 016458 223 VSGSCDSTARLWDTRVASRAVRTFHG-------H-EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (389)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~-------~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 294 (389)
++.+.||.|++||+.++ .....+.+ . ...+..++|+|++..++..+.|+.|++|+...+.....+......
T Consensus 154 Avss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s 232 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS 232 (933)
T ss_pred EEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc
Confidence 99999999999999876 44333322 1 345678999999888999999999999999998888777664332
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
..++.+.|+|+|+|||+++.||.|.|||.++... ......|++++|.|++..+-.-...|...+
T Consensus 233 ---s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--------~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 233 ---SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--------HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred ---cceEEEEEcCCCcEEeeeccCCcEEEEecccchh--------ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 2389999999999999999999999999987222 233468999999998876655544554444
No 110
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.98 E-value=6.1e-31 Score=209.03 Aligned_cols=256 Identities=23% Similarity=0.335 Sum_probs=213.3
Q ss_pred CCCcccCCCcce--eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458 47 RAPVSFGPTDLV--CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (389)
Q Consensus 47 ~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (389)
..+..|....-+ ...+|.|-.++|++++|.+++..+++++.|+.+++|++...+...++.+|.+.|+++.|......+
T Consensus 197 r~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~v 276 (459)
T KOG0288|consen 197 RIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRV 276 (459)
T ss_pred hhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccce
Confidence 334455544433 677888999999999999999999999999999999999999999999999999999999887779
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG 204 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 204 (389)
++|+.|.+|++||+.... +..+.. ....+.+|...+ ..+++|..|+.|++||+++....... .
T Consensus 277 Vsgs~DRtiK~WDl~k~~-------C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv------~ 339 (459)
T KOG0288|consen 277 VSGSADRTIKLWDLQKAY-------CSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSV------P 339 (459)
T ss_pred eeccccchhhhhhhhhhh-------eecccc-ccccccceEecc---eeeeecccccceEEEeccCCceeeEe------e
Confidence 999999999999998733 222222 234455666653 56899999999999999999988887 3
Q ss_pred CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee----ccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (389)
..+.|+++..++ ++..+++++.|.++.+.|+++. .....+.+. ....+.+.|||++.|+++|+.||.|+||++.
T Consensus 340 ~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 340 LGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred cCcceeeEeecc-CCeEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence 345899999998 7888888899999999999987 555555432 2347899999999999999999999999999
Q ss_pred CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEE
Q 016458 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (389)
+++........... ..|++++|+|.|.++++++.++.+.+|
T Consensus 418 tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 418 TGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CceEEEEeccCCCC---cceEEEEEcCCCchhhcccCCcceEec
Confidence 99988877654432 259999999999999999999999998
No 111
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=5.5e-28 Score=203.97 Aligned_cols=276 Identities=17% Similarity=0.167 Sum_probs=205.2
Q ss_pred CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
+.+++++.|+.|++||..+++.+..+..+.. +..++|+|+++.+ ++++.++.|++||..++. ....+..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------~~~~~~~~~ 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE-------VIGTLPSGP 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc-------EEEeccCCC
Confidence 5788999999999999999998888876544 6789999999876 566788999999998744 233333333
Q ss_pred cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC-ceEEEeCC
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTR 237 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~ 237 (389)
.+..+.|+|++..++++++.++.|++||+.+...+..+. ....+.+++++| ++.+++++..++ .+.+||.+
T Consensus 74 -~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 74 -DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP------VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred -CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee------CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCC
Confidence 346788999985455566678999999999887776652 233467899999 778888877765 56778987
Q ss_pred CCCcceeEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCC--CCCCCeeEEEeCCCCCEEEE
Q 016458 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFA 314 (389)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~ 314 (389)
+. ....... ....+.+++|+|++++|+++ ..++.|++||+.+++....+...... ........++|+|+++++++
T Consensus 146 ~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 146 TY-EIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred CC-eEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 65 4433332 23456789999999988655 46899999999998776655422111 01112456889999998655
Q ss_pred E-ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee-eCCCeeEEeecceecccCccc
Q 016458 315 G-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 315 ~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~~~~W~~~~~~~~ 382 (389)
+ ..++.+.+||+.+++....+ .+...+.+++|+|+|++|+++ +.+|.|++ ||+.+++..
T Consensus 224 ~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v----~d~~~~~~~ 284 (300)
T TIGR03866 224 ALGPANRVAVVDAKTYEVLDYL-----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSV----IDVAALKVI 284 (300)
T ss_pred EcCCCCeEEEEECCCCcEEEEE-----EeCCCcceEEECCCCCEEEEEcCCCCeEEE----EECCCCcEE
Confidence 4 45668999999988877655 234578999999999999886 46899999 999999863
No 112
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.97 E-value=3.1e-29 Score=201.94 Aligned_cols=306 Identities=16% Similarity=0.198 Sum_probs=231.4
Q ss_pred CCcceeeeecccccCcEEEEEEcCCC--CeEEEEecCCcEEEEeCCCC----CeeEEEeeCCCcEEEEEECC-CCcEEEE
Q 016458 54 PTDLVCCRTLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSP-TGQSVAC 126 (389)
Q Consensus 54 ~~~~~~~~~l~~h~~~v~~~~~~~~~--~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 126 (389)
..........+-|.++|++++|+|.. +++|+|..-|.|-+||+.+. ..+..+..|..+|.++.|+| +...+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34556666778899999999999955 48889999999999999532 33556778889999999999 5578999
Q ss_pred ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-EEEecCcccCCC
Q 016458 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGH 205 (389)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 205 (389)
.+.||+|++-|++.... ............+..+.|+.+. ..++.+..=|...+||++++.. ...+ ..|
T Consensus 253 sSyDGtiR~~D~~~~i~-----e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~~-----~lh 321 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNIS-----EEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYENL-----RLH 321 (498)
T ss_pred eccCceeeeeeecchhh-----HHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchhh-----hhh
Confidence 99999999999987431 1222333345567778888876 4577777777999999998765 3333 567
Q ss_pred CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc---ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC--
Q 016458 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR-- 280 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-- 280 (389)
...|.+++++|-...+|++++.|++.+|||+|.... ++.....|...|.+..|||.+-.|++.+.|..|+|||..
T Consensus 322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~ 401 (498)
T KOG4328|consen 322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI 401 (498)
T ss_pred hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccc
Confidence 789999999999999999999999999999987521 234556799999999999988889999999999999983
Q ss_pred --CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEE-EECCCCCe
Q 016458 281 --TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL-GLSADGSA 357 (389)
Q Consensus 281 --~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~ 357 (389)
...+...+......+.--......|.|+..++++|..-..|-|+|-..++.+..+. ......|.++ .|+|-+..
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~---~P~~~tI~~vn~~HP~~~~ 478 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH---DPESSTIPSVNEFHPMRDT 478 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc---Cccccccccceeecccccc
Confidence 33344444333222111124456899999999999999999999999898888763 2222245544 79998874
Q ss_pred E-EeeeCCCeeEEeecceecc
Q 016458 358 L-CTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 358 l-~~~~~dg~i~i~~~~W~~~ 377 (389)
+ +.++..|.|.| |--+
T Consensus 479 ~~aG~~s~Gki~v----ft~k 495 (498)
T KOG4328|consen 479 LAAGGNSSGKIYV----FTNK 495 (498)
T ss_pred eeccCCccceEEE----EecC
Confidence 4 44555788888 7544
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.8e-30 Score=215.15 Aligned_cols=326 Identities=19% Similarity=0.263 Sum_probs=258.1
Q ss_pred cccccCCCCCcccCCCcc------eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC--CeeEEEeeCCCc
Q 016458 40 GYSRSQGRAPVSFGPTDL------VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAW 111 (389)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~------~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~ 111 (389)
.+...+++....|+.... .+..+++.|.+-|+.++...+++.|+++|.|-+|++|+...+ -+..++..|...
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY 119 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY 119 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch
Confidence 567777777777765432 257889999999999999999999999999999999999877 567788899999
Q ss_pred EEEEEE-CCCCcEEEEecCCCcEEEEeCCCCCC----CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEE
Q 016458 112 VMTCAF-SPTGQSVACGGLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (389)
Q Consensus 112 v~~~~~-~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 186 (389)
|.|+++ .++...+|+|+-|+.|.+||++.+.. ............++...|.+++.++.+ ..+++|+..+.+++|
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLW 198 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEe
Confidence 999999 78899999999999999999997632 111222222233889999999999987 799999999999999
Q ss_pred eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEE
Q 016458 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (389)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (389)
|.++.+.+..+ .+|...|..+..++ ++..+++++.||+|++||+... +++.++..|...|.++..+|+-..++
T Consensus 199 Dprt~~kimkL-----rGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 199 DPRTCKKIMKL-----RGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred ccccccceeee-----eccccceEEEEEcC-CCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEE
Confidence 99999999988 79999999999998 8999999999999999999987 89999999999999999999999999
Q ss_pred EEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC-------
Q 016458 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ------- 339 (389)
Q Consensus 267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------- 339 (389)
+|+.||.|..=|+++......+..... ++..+..+...+-+-+++.|+.|.-|.......+.......
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~da-----Pv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~ 346 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDA-----PVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSN 346 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCC-----chhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCC
Confidence 999999999999998544433333222 36777776555555677788888888653211111100000
Q ss_pred -------------CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 340 -------------NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 340 -------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
.....+|..-+.-.|.++++|=...|.+.+ ||+-.+...
T Consensus 347 ~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~l----wDIl~~~~~ 398 (735)
T KOG0308|consen 347 NHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVAL----WDILACVKV 398 (735)
T ss_pred CccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEE----EEeeeeeeh
Confidence 001113444455567889999999999999 999876543
No 114
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.5e-29 Score=190.77 Aligned_cols=289 Identities=11% Similarity=0.180 Sum_probs=221.0
Q ss_pred EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCc
Q 016458 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP 149 (389)
Q Consensus 70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 149 (389)
-.|+.|++-|.+||+|+.||.|.|||+.+......+.+|..+|.+++||++|+.|++++.|..|.+||+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs------- 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS------- 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-------
Confidence 7899999999999999999999999999999989999999999999999999999999999999999998865
Q ss_pred ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458 150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (389)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (389)
+.+.+. ..++|+...|+|...+.+++.-.+..-.+-++..+.. ..++............+..|.+ .++++++|...|
T Consensus 99 ~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKG 175 (405)
T KOG1273|consen 99 PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKG 175 (405)
T ss_pred ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccC-CCCEEEEecCcc
Confidence 333333 4688999999998877777766665555666554221 2221111011111122234665 899999999999
Q ss_pred ceEEEeCCCCCcceeEEeeec-cceEEEEEecCCCEEEEEecCCeEEEEECCCCcee------eEeeccCCCCCCCCeeE
Q 016458 230 TARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL------QVYYQQHGENEIPHVTS 302 (389)
Q Consensus 230 ~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~i~~ 302 (389)
.+.++|..+. +++..++-.. ..|..+.++..|..|+..+.|..|+.|+++.--.. ..............-.+
T Consensus 176 kllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 176 KLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred eEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 9999999988 7877777655 67999999999999999999999999998631111 00000000011123578
Q ss_pred EEeCCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCCCCC-CCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 303 IAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 303 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
++|+.+|.|+++|+. ...++||....|..++.+ .+.. .....+.|+|-...+++- ..|.++| |....
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL----hG~kgE~l~DV~whp~rp~i~si-~sg~v~i----w~~~~ 323 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL----HGTKGEELLDVNWHPVRPIIASI-ASGVVYI----WAVVQ 323 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeee----cCCchhheeecccccceeeeeec-cCCceEE----EEeec
Confidence 899999999988874 347999999999999998 5555 567889999988888777 7899999 98754
No 115
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6e-29 Score=206.78 Aligned_cols=303 Identities=16% Similarity=0.226 Sum_probs=231.4
Q ss_pred CCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc--EE
Q 016458 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ--SV 124 (389)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l 124 (389)
+.|....|-+..+...++||++.|.||...|.|.+|++|+.||+|+||.+.+|.++..+.... .|.|++|+|.+. .|
T Consensus 380 Psp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vL 458 (733)
T KOG0650|consen 380 PSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVL 458 (733)
T ss_pred CChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeE
Confidence 445566777778888999999999999999999999999999999999999999999988764 599999999764 34
Q ss_pred EEecCCCcEEEEeCCCCCC----------------CCC--------------CCcceeeecccccceEEEEEeeCCCcEE
Q 016458 125 ACGGLDSVCSIFNLNSPTD----------------KDG--------------NLPVSRMLSGHKGYVSCCQYVPDEDTHL 174 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~----------------~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l 174 (389)
|++.. ..+.|-+..-+.. ... ...-....-.|...|..+.|+..| .+|
T Consensus 459 AvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYl 536 (733)
T KOG0650|consen 459 AVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYL 536 (733)
T ss_pred EEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceE
Confidence 44433 3344444332210 000 000123444578899999999998 577
Q ss_pred EEeeC---CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc
Q 016458 175 ITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG 251 (389)
Q Consensus 175 ~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 251 (389)
++... ...|.|.++........| ....+.+.++.|+| ...+|++++ ...|++||+... ..+..+.....
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~PF-----~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kq-elvKkL~tg~k 608 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQSPF-----RKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQ-ELVKKLLTGSK 608 (733)
T ss_pred EEeccCCCcceEEEEecccccccCch-----hhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHH-HHHHHHhcCCe
Confidence 77654 457889999877666655 46677899999999 555566555 468999999875 66666666667
Q ss_pred ceEEEEEecCCCEEEEEecCCeEEEEECCCCcee-eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc---
Q 016458 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL--- 327 (389)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--- 327 (389)
.|..++.+|.|..|+.|+.|+.+..||+.-.... ..+..+.. .+++++|++.-.++++|+.||.+.||.-.
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~-----avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK-----AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh-----hhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence 8999999999999999999999999999876443 33333222 49999999999999999999999998532
Q ss_pred ---cce---EEEeecCcCCCCCCC----eeEEEECCCCCeEEeeeCCCeeEE
Q 016458 328 ---LAK---VVLNLGSLQNSHEGR----ITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 328 ---~~~---~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
... ++..+ .+|... |....|+|....|+++|.||+|++
T Consensus 684 Dl~qnpliVPlK~L----~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 684 DLLQNPLIVPLKRL----RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRL 731 (733)
T ss_pred hhhcCCceEeeeec----cCceeecccceEeecccCCCceEEecCCCceEEe
Confidence 222 33444 566654 889999999999999999999999
No 116
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3e-29 Score=202.19 Aligned_cols=259 Identities=22% Similarity=0.347 Sum_probs=215.5
Q ss_pred eEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcc----------eeee-cccccceEEEEEeeCC
Q 016458 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV----------SRML-SGHKGYVSCCQYVPDE 170 (389)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----------~~~~-~~~~~~v~~~~~~~~~ 170 (389)
...+..|.-++.+++++|++++.++++.+|+|.=|++.++......++. ...- ..|...+.+++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4455678888999999999999999999999999999887633111111 1111 4889999999999998
Q ss_pred CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec
Q 016458 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 250 (389)
Q Consensus 171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 250 (389)
.+|++|+.|..|.||+..+.+.+..+ .+|.+.|.+++|-. +.+.+++++.|..+++|++... ..+.++.+|.
T Consensus 215 -kylatgg~d~~v~Iw~~~t~ehv~~~-----~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHq 286 (479)
T KOG0299|consen 215 -KYLATGGRDRHVQIWDCDTLEHVKVF-----KGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQL-SYVETLYGHQ 286 (479)
T ss_pred -cEEEecCCCceEEEecCcccchhhcc-----cccccceeeeeeec-CccceeeeecCCceEEEehhHh-HHHHHHhCCc
Confidence 89999999999999999999999998 89999999999997 7788999999999999999987 7788899999
Q ss_pred cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (389)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (389)
..|.+|....-++.+.+|+.|.++++|++.....+ .+..+.. .+-+++|-. ...+++|+.||.|.+|++...+
T Consensus 287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~~~-----sidcv~~In-~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 287 DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGGEG-----SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred cceeeechhcccceEEeccccceeEEEecccccee-eeeCCCC-----CeeeEEEec-ccceeeccCCceEEEeeecccC
Confidence 99999998888888888889999999999654333 3333322 388888864 4688999999999999999999
Q ss_pred EEEeecCcCCC--------CCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 331 VVLNLGSLQNS--------HEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 331 ~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
++.+....... +...|++++..|...++++|+.+|.|++ |.+++|
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrL----W~i~~g 412 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRL----WKIEDG 412 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEE----EEecCC
Confidence 88877532111 1127899999999999999999999999 999998
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=194.34 Aligned_cols=265 Identities=24% Similarity=0.360 Sum_probs=223.9
Q ss_pred CCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeC------CC-----------------------
Q 016458 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA------LT----------------------- 98 (389)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~------~~----------------------- 98 (389)
....|......|+.++.||.+.|+++.|++.+.++++++.|++..||.. ..
T Consensus 171 TA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~ 250 (481)
T KOG0300|consen 171 TARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDT 250 (481)
T ss_pred ceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccc
Confidence 3457888899999999999999999999999999999999999999962 00
Q ss_pred -------C----CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe
Q 016458 99 -------S----QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167 (389)
Q Consensus 99 -------~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (389)
+ .++..+.+|.+.|.++.|...|+.+++++.|.+..+||++++. +...+.+|....+.++-+
T Consensus 251 d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-------~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 251 DSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-------VVNILTGHDSELTHCSTH 323 (481)
T ss_pred ccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc-------eeccccCcchhccccccC
Confidence 0 1345667888999999999999999999999999999999876 788899999999999999
Q ss_pred eCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE
Q 016458 168 PDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF 246 (389)
Q Consensus 168 ~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 246 (389)
|.. .++++++.|.+.++||++.. ..+..| .+|...|+++.|.. +..+++|+.|.+|++||+++...++..+
T Consensus 324 ptQ-rLVvTsSrDtTFRLWDFReaI~sV~VF-----QGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATI 395 (481)
T KOG0300|consen 324 PTQ-RLVVTSSRDTTFRLWDFREAIQSVAVF-----QGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATI 395 (481)
T ss_pred Ccc-eEEEEeccCceeEeccchhhcceeeee-----cccccceeEEEEec--CCceeecCCCceEEEeeeccccCcceee
Confidence 985 78999999999999999853 344556 79999999999984 4568999999999999999988888888
Q ss_pred eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC--EEEEEecCCcEEEE
Q 016458 247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVW 324 (389)
Q Consensus 247 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~ 324 (389)
. ...+++.++.+..+..|+.-..+..|++||+.. ..+..++......|...|+|++|..+.. -|++++.|..+.-|
T Consensus 396 R-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 396 R-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred e-cCCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence 7 567899999998888999999999999999874 4455555444455666799999986543 57788899999999
Q ss_pred Ecccc
Q 016458 325 DTLLA 329 (389)
Q Consensus 325 d~~~~ 329 (389)
++...
T Consensus 474 ~in~p 478 (481)
T KOG0300|consen 474 KINTP 478 (481)
T ss_pred Eeccc
Confidence 87643
No 118
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=2.2e-28 Score=210.75 Aligned_cols=303 Identities=17% Similarity=0.300 Sum_probs=244.4
Q ss_pred ccCCCcceeeeecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCCCcEEEEec
Q 016458 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGG 128 (389)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 128 (389)
.+....-+.+.+|+.-.++|+.++|.-||+ .+|+|+..|.+.+||++..+....+. .|.+.|....|.|....+++++
T Consensus 228 ifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~ 307 (910)
T KOG1539|consen 228 IFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG 307 (910)
T ss_pred EEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc
Confidence 344455566677775579999999999996 67788888999999999888877766 7778899999999999999999
Q ss_pred CCCcEEEEeCCCCCC-------------------------------------------------------------CC--
Q 016458 129 LDSVCSIFNLNSPTD-------------------------------------------------------------KD-- 145 (389)
Q Consensus 129 ~dg~i~vw~~~~~~~-------------------------------------------------------------~~-- 145 (389)
.|+.+++|-.+++.. +.
T Consensus 308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 998888886663220 00
Q ss_pred -----CCCcce-------------------------------------------eeecccccceEEEEEeeCCCcEEEEe
Q 016458 146 -----GNLPVS-------------------------------------------RMLSGHKGYVSCCQYVPDEDTHLITS 177 (389)
Q Consensus 146 -----~~~~~~-------------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~ 177 (389)
...+.. ..++.....+++++.++-| ++.+.|
T Consensus 388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG 466 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIG 466 (910)
T ss_pred cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEe
Confidence 000000 0001112467788888887 788999
Q ss_pred eCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE
Q 016458 178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 257 (389)
Q Consensus 178 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~ 257 (389)
+..|.|-+||+.+|-....+... ..|..+|+.++... -++.+++++.+|.+.+||.... ..+..+. -...+.++.
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~~--~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k-~l~~~l~-l~~~~~~iv 541 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGDS--PAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKK-VLKKSLR-LGSSITGIV 541 (910)
T ss_pred ccCCeEEEEEcccCeeecccccC--ccccCceeEEEecC-CCceEEEccCcceEEEEecCCc-ceeeeec-cCCCcceee
Confidence 99999999999999888877422 58999999999997 7788999999999999999876 4444544 355688899
Q ss_pred EecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (389)
Q Consensus 258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (389)
.+.....++.+..|-.|+++|..+.+..+.+..+.. .|++++|||||++|++++.|++|++||+.++..+-.+
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-- 614 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-- 614 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE--
Confidence 998888999999999999999999888888866554 4999999999999999999999999999999999887
Q ss_pred cCCCCCCCeeEEEECCCCCeEEeeeCC-CeeEE
Q 016458 338 LQNSHEGRITCLGLSADGSALCTGSWD-TNLKV 369 (389)
Q Consensus 338 ~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i 369 (389)
.-+.+.+++.|+|+|.+|||+..| ..|++
T Consensus 615 ---~vd~~~~sls~SPngD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 615 ---LVDSPCTSLSFSPNGDFLATVHVDQNGIYL 644 (910)
T ss_pred ---ecCCcceeeEECCCCCEEEEEEecCceEEE
Confidence 456789999999999999999999 66888
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.9e-29 Score=201.89 Aligned_cols=265 Identities=19% Similarity=0.286 Sum_probs=214.3
Q ss_pred CcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEec-CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458 89 GRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (389)
Q Consensus 89 g~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (389)
.++.+||+.+|....++++.. ..-.++..- ++.+++++. ....+.+|.+..... .....--.++|.+++-
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~-------~~q~~v~Pg~v~al~s 89 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQ-------VVQYIVLPGPVHALAS 89 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhh-------hhhhcccccceeeeec
Confidence 569999999999998888762 222222221 335555554 456799999876331 1123334688999999
Q ss_pred eeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC--------
Q 016458 167 VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-------- 238 (389)
Q Consensus 167 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------- 238 (389)
+|.| .+++.|+..|.|++|.+.+|..+..+ ..|...|+++.|+. ++.+|++|+.||.|.+|++..
T Consensus 90 ~n~G-~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~ 162 (476)
T KOG0646|consen 90 SNLG-YFLLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDH 162 (476)
T ss_pred CCCc-eEEEeecccCcEEEEEeccccHHHHH-----HhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCC
Confidence 9997 77888879999999999999999988 78999999999997 899999999999999997632
Q ss_pred CCcceeEEeeeccceEEEEEecC--CCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 239 ASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
...++..+..|.-+|+.+...+. ..+|++++.|.++++||+..+..+..+..+.. +.+++.+|.++.+++|+
T Consensus 163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s------i~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS------IKAVALDPAERVVYIGT 236 (476)
T ss_pred CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc------ceeEEEcccccEEEecC
Confidence 23678889999999999988764 46899999999999999999998888766543 89999999999999999
Q ss_pred cCCcEEEEEcccce----------------EEEeecCcCCCCCC--CeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 317 SNGDCYVWDTLLAK----------------VVLNLGSLQNSHEG--RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 317 ~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
.+|.|.+.++.... .+..+ .+|.+ .|+|++++-||.+|++|+.||.++| ||+.+
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~----~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv----Wdi~S 308 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL----VGHENESAITCLAISTDGTLLLSGDEDGKVCV----WDIYS 308 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeee----ccccCCcceeEEEEecCccEEEeeCCCCCEEE----Eecch
Confidence 99999998875432 22233 57877 9999999999999999999999999 99988
Q ss_pred Cccc
Q 016458 379 GALS 382 (389)
Q Consensus 379 ~~~~ 382 (389)
.+..
T Consensus 309 ~Q~i 312 (476)
T KOG0646|consen 309 KQCI 312 (476)
T ss_pred HHHH
Confidence 7644
No 120
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.3e-27 Score=200.16 Aligned_cols=226 Identities=19% Similarity=0.292 Sum_probs=185.4
Q ss_pred CCCcccCCC-cceeeeecccccC-cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458 47 RAPVSFGPT-DLVCCRTLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (389)
Q Consensus 47 ~~~~~~~~~-~~~~~~~l~~h~~-~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (389)
+....|.+. .+-+...+.|+.+ .|-+++|++ +..|++.+.+|.|.-||+.++++...+....+.|.+++.+|.+..+
T Consensus 47 g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l 125 (691)
T KOG2048|consen 47 GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTIL 125 (691)
T ss_pred CcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceE
Confidence 444566665 4556667888765 899999994 5588999999999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc--
Q 016458 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-- 202 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-- 202 (389)
+.|+.||.+..++...+ .+.....+...++.|.++.|+|++ ..+++|+.||.|++||...+...........
T Consensus 126 ~IgcddGvl~~~s~~p~-----~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 126 AIGCDDGVLYDFSIGPD-----KITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred EeecCCceEEEEecCCc-----eEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence 99999997777776653 333455566668999999999997 6799999999999999999987774322211
Q ss_pred -CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC
Q 016458 203 -SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (389)
Q Consensus 203 -~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (389)
.....-|.++.+. ....|++|...|+|.+||...+ ..++.+..|...|.+++..++++++++++.|+.|..|...+
T Consensus 200 ~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 200 SKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred ccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCc-chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence 1233446777777 4568999999999999999988 88889999999999999999999999999999988887654
Q ss_pred C
Q 016458 282 G 282 (389)
Q Consensus 282 ~ 282 (389)
.
T Consensus 277 ~ 277 (691)
T KOG2048|consen 277 N 277 (691)
T ss_pred C
Confidence 4
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.5e-29 Score=202.16 Aligned_cols=250 Identities=18% Similarity=0.234 Sum_probs=207.3
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC--
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT-- 142 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-- 142 (389)
--.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|...|+|+.|+.||.+|++|+.||.|.+|.+..--
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 346789999999999999999899999999999999999999999999999999999999999999999999876522
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (389)
...........+..|.-+|+++...+.+ ..++++++.|.++++||+..+..+..+ ..+..+.+++.+| ....
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti------~fp~si~av~lDp-ae~~ 231 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI------TFPSSIKAVALDP-AERV 231 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE------ecCCcceeEEEcc-cccE
Confidence 1222455778899999999999988752 368999999999999999999988887 5678899999999 8889
Q ss_pred EEEeeCCCceEEEeCCCCC---------------cceeEEeeecc--ceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458 222 FVSGSCDSTARLWDTRVAS---------------RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (389)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (389)
+++|+.+|.|.+.++.... ..+..+.+|.+ .|+|++++-||.+|++|+.||.|++||+.+.++
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 9999999999998875432 23456778888 999999999999999999999999999999988
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCCEEEEE-ecCCcEEEEEc
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDT 326 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~ 326 (389)
++++....+ +|+.+.+.|-.+-.+.+ .....+-.|++
T Consensus 312 iRtl~~~kg-----pVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 312 IRTLQTSKG-----PVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred HHHHhhhcc-----ccceeEeeccccceecccccCccCCchHh
Confidence 888765333 48888886654433332 22334444443
No 122
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.4e-28 Score=207.44 Aligned_cols=305 Identities=15% Similarity=0.203 Sum_probs=241.3
Q ss_pred EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee---EEEeeCCCcEEEEEECCC-----------CcEEEEecCCCcEEE
Q 016458 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKT---HAIKLPCAWVMTCAFSPT-----------GQSVACGGLDSVCSI 135 (389)
Q Consensus 70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~---~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~v 135 (389)
..++.|++....|.+...|..++|||+++...+ ..+--|...|+.+.--|- ...+.+++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 457889999999999999999999999876544 344457677777665551 235899999999999
Q ss_pred EeCCCCCCCCC------------------CCc------------ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE
Q 016458 136 FNLNSPTDKDG------------------NLP------------VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (389)
Q Consensus 136 w~~~~~~~~~~------------------~~~------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 185 (389)
|++........ ... ...........+.+++.+|++ ++|++|...|.+++
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRV 485 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEE
Confidence 99987331110 000 000111223468999999998 78999999999999
Q ss_pred EeCCCCeeEEEecCcccCCCCCCeeEEEeeCC--CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC-
Q 016458 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG- 262 (389)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~- 262 (389)
|++........+ ..|...|.|+.++.+ ..++|++++.|..|++||......++.++.+|...|+++.|--+|
T Consensus 486 y~Lq~l~~~~~~-----eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl 560 (1080)
T KOG1408|consen 486 YDLQELEYTCFM-----EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL 560 (1080)
T ss_pred EEehhhhhhhhe-----ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence 999988877777 799999999999853 357899999999999999988778889999999999999998877
Q ss_pred -CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCC
Q 016458 263 -NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 341 (389)
Q Consensus 263 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 341 (389)
..+++++.|..|.+--.+.......+..++.......+..++..|..+++++++.|..|+|||+.+++..+.++.. ..
T Consensus 561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs-~~ 639 (1080)
T KOG1408|consen 561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS-RD 639 (1080)
T ss_pred ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc-cc
Confidence 6789999998776543332222333333333333445899999999999999999999999999999999999754 56
Q ss_pred CCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCcc
Q 016458 342 HEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWG 385 (389)
Q Consensus 342 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~~ 385 (389)
|++....+...|.|-||++.+.|.++.+ +|+.+|+....|
T Consensus 640 ~eG~lIKv~lDPSgiY~atScsdktl~~----~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCSDKTLCF----VDFVSGECVAQM 679 (1080)
T ss_pred CCCceEEEEECCCccEEEEeecCCceEE----EEeccchhhhhh
Confidence 7788889999999999999999999999 999999887644
No 123
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.97 E-value=1.1e-28 Score=190.87 Aligned_cols=299 Identities=21% Similarity=0.311 Sum_probs=225.4
Q ss_pred ecccccCcEEEEEEcC-----CCCeEEEEecCCcEEEEeCCCCCeeEEEe-----eCCCcEEEEEECCC----CcEEEEe
Q 016458 62 TLQGHAGKVYSLDWTS-----ERNRIVSASQDGRLIVWNALTSQKTHAIK-----LPCAWVMTCAFSPT----GQSVACG 127 (389)
Q Consensus 62 ~l~~h~~~v~~~~~~~-----~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-----~~~~~v~~~~~~~~----~~~l~~~ 127 (389)
....|..+|..++|++ +-..+|+++.+ .+.+|+.....-+..++ .+.+....++|+-+ ..++|+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3456889999999995 22466776654 78999875443222222 24566788888653 4578999
Q ss_pred cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
+.-|.|+|.|+.+++ ....+.+|...|+.+.+.|+.++++++++.|..|++||+++..++..+... .+|.+
T Consensus 112 G~~GvIrVid~~~~~-------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~--egHrd 182 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQ-------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV--EGHRD 182 (385)
T ss_pred cceeEEEEEecchhh-------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc--ccccC
Confidence 999999999998866 778899999999999999999999999999999999999999999999765 78999
Q ss_pred CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC------------------------c---ceeEEeeeccceEEEEEec
Q 016458 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS------------------------R---AVRTFHGHEGDVNTVKFFP 260 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------~---~~~~~~~~~~~i~~~~~~~ 260 (389)
.|.++.|++ ++.++++++.|.+|++|++.... . ...+-..|...|.|+.|-
T Consensus 183 eVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~- 260 (385)
T KOG1034|consen 183 EVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF- 260 (385)
T ss_pred cEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH-
Confidence 999999999 88899999999999999987321 0 001223477778888885
Q ss_pred CCCEEEEEecCCeEEEEEC-CCCceeeEeecc----------CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458 261 DGNRFGTGSDDGTCRLFDI-RTGHQLQVYYQQ----------HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (389)
|+++++-+.++.|..|.. .-.+.+...... .-+...-+....+|+|-+++||.|...|.|++||++..
T Consensus 261 -gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 261 -GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred -hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 579999999999999987 222221111111 11111112344567788999999999999999999987
Q ss_pred eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
++...-..........|...+|+.||.+|+..++|++|-- ||.-
T Consensus 340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwr----wdrv 383 (385)
T KOG1034|consen 340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWR----WDRV 383 (385)
T ss_pred CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEE----EEee
Confidence 6642221111334567999999999999999999999987 8753
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.2e-29 Score=185.98 Aligned_cols=257 Identities=18% Similarity=0.245 Sum_probs=201.8
Q ss_pred eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEee-CCCcEEEEeeCCCeEE
Q 016458 106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITSSGDQTCV 184 (389)
Q Consensus 106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~ 184 (389)
..|...|..+...--|++|++++.|++|+|+..+... .......+.+|.++|..++|.. .-+.+|++++.||.|.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~----~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG----QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC----CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 3566777777777889999999999999999998744 2357788999999999999975 3237999999999999
Q ss_pred EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC-CcEEEEeeCCCceEEEeCCCCC--cceeEEeeeccceEEEEEecC
Q 016458 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPD 261 (389)
Q Consensus 185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~ 261 (389)
||.-+++.-..... ...|...|++++|.|.+ +-+|++++.||.|.+.+.+... ........|.-.|++++|.|.
T Consensus 84 iWke~~g~w~k~~e---~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 84 IWKEENGRWTKAYE---HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred EEecCCCchhhhhh---hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 99988884333221 16789999999999843 4578899999999999987652 234456789999999999995
Q ss_pred ---C-----------CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC----CEEEEEecCCcEEE
Q 016458 262 ---G-----------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDCYV 323 (389)
Q Consensus 262 ---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i 323 (389)
| +.|++|+.|..|+||+...+.-.... ....|...|+.++|.|.- .+|++++.||.+.|
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~---~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER---TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcchhhhh---hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 4 66999999999999999886322221 124556689999999964 48999999999999
Q ss_pred EEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
|-............ .......+..+.||..|.+|+.++.|+.+.+ |.-.
T Consensus 238 wt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtl----wke~ 286 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTL----WKEN 286 (299)
T ss_pred EEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEE----EEeC
Confidence 98763212211111 1445678999999999999999999999999 8754
No 125
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.7e-28 Score=186.59 Aligned_cols=246 Identities=18% Similarity=0.237 Sum_probs=193.2
Q ss_pred eeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458 106 KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 184 (389)
Q Consensus 106 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 184 (389)
..+...|.+++||| ...++++++.||+|++|+++... ....+....|.++|.+++|+.+| ..+++|+.|+.++
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k 97 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----QLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAK 97 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCC-----cccchhhhccCCCeEEEEEccCC-ceEEeeccCCceE
Confidence 34567899999999 55666789999999999998732 11235667899999999999998 7899999999999
Q ss_pred EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc--EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR--MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (389)
Q Consensus 185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (389)
+||+.+++.... ..|..+|.++.|-+ ... .|++|+.|.+|+.||.|.. .++.++. -.+.+.++.. ..
T Consensus 98 ~wDL~S~Q~~~v------~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~-LPeRvYa~Dv--~~ 166 (347)
T KOG0647|consen 98 LWDLASGQVSQV------AAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ-LPERVYAADV--LY 166 (347)
T ss_pred EEEccCCCeeee------eecccceeEEEEec-CCCcceeEecccccceeecccCCC-Ceeeeee-ccceeeehhc--cC
Confidence 999999976655 58999999999987 444 8999999999999999987 6666665 3445666555 35
Q ss_pred CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc--eEEEeecCcCC
Q 016458 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA--KVVLNLGSLQN 340 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~ 340 (389)
.+++++..+..|.+|+++.+......... .....+++++..++....+.|+-+|.+.|..+..+ +.-.++ +
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~S---pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF----k 239 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIES---PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF----K 239 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhcC---cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE----E
Confidence 57889999999999999765433222111 12224889998888888899999999999998876 333333 3
Q ss_pred CCC---------CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 341 SHE---------GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 341 ~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
.|. ..|++|+|+|.-..|+|+|.||++.. ||-+..
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~F----WDkdar 283 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSF----WDKDAR 283 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecCCceEEE----ecchhh
Confidence 333 36889999998889999999999999 997654
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-27 Score=183.38 Aligned_cols=278 Identities=16% Similarity=0.287 Sum_probs=205.3
Q ss_pred ccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC----CeeEEEeeCCCcEEEEEECC--CCcEEEEecCCCcEEEEe
Q 016458 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIFN 137 (389)
Q Consensus 64 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw~ 137 (389)
.+|.+-|.|+.|.+.|+++|+|+.|++|+|||..+. ......+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 479999999999999999999999999999996443 35566788999999999965 689999999999999998
Q ss_pred CCCCC--CCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCc--------ccCCCC
Q 016458 138 LNSPT--DKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGE--------FQSGHT 206 (389)
Q Consensus 138 ~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~ 206 (389)
-.... .....+....++....+.|++++|.|.. +-.+++++.||.|+||+......+...... ....+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 74322 2224556667778888999999999963 256889999999999987765433322111 112456
Q ss_pred CCeeEEEeeCC--CCcEEEEeeCC-----CceEEEeCCCCC---cceeEEeeeccceEEEEEecC----CCEEEEEecCC
Q 016458 207 ADVLSVSISGS--NSRMFVSGSCD-----STARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPD----GNRFGTGSDDG 272 (389)
Q Consensus 207 ~~v~~~~~~~~--~~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg 272 (389)
.+..|+.|+|. ...+|++|+.+ +.+.||...... ..+..+.+|..+|+.++|.|+ ...|++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 67889999873 34578887765 478899876553 234566789999999999994 46799999999
Q ss_pred eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEEC
Q 016458 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (389)
Q Consensus 273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 352 (389)
|+||.+....... . . . . + ..|+ .-+. + .-+.+..+ ..|.+.|..+.|+
T Consensus 250 -v~I~~v~~~~s~i-~-~-e-e-----~----~~~~--------~~~~---l---~v~~vs~~----~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 250 -VRIFKVKVARSAI-E-E-E-E-----V----LAPD--------LMTD---L---PVEKVSEL----DDHNGEVWRVRWN 297 (361)
T ss_pred -EEEEEEeeccchh-h-h-h-c-----c----cCCC--------Cccc---c---ceEEeeec----cCCCCceEEEEEe
Confidence 9999987532111 0 0 0 0 0 0011 0001 1 12334445 7899999999999
Q ss_pred CCCCeEEeeeCCCeeEEeecceecc
Q 016458 353 ADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 353 ~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
-.|..|++.|.||.|++ |...
T Consensus 298 mtGtiLsStGdDG~VRL----Wkan 318 (361)
T KOG2445|consen 298 MTGTILSSTGDDGCVRL----WKAN 318 (361)
T ss_pred eeeeEEeecCCCceeee----hhhh
Confidence 99999999999999999 8754
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=4.8e-27 Score=191.78 Aligned_cols=300 Identities=19% Similarity=0.296 Sum_probs=236.9
Q ss_pred CcccCCCcceeeeecccccCcEEEEEEcC--CCCeEEEE--ecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458 49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTS--ERNRIVSA--SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (389)
Q Consensus 49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~--~~~~l~~~--~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (389)
...|+...+..++.+-.....|+|++|++ .|.+|+.- +.+..+.+||...+......+..++.|....|+|.+..+
T Consensus 136 vriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nl 215 (626)
T KOG2106|consen 136 VRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNL 215 (626)
T ss_pred eeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcE
Confidence 34699899999999988888999999998 34455443 456678999999999888888888899999999977777
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCcceeeecc-cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 203 (389)
++....|.+..|+++.+.. .+....+.. .+..|.|++|.++++ +++|..+|.|.||+..+....... .
T Consensus 216 iit~Gk~H~~Fw~~~~~~l----~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~-----~ 284 (626)
T KOG2106|consen 216 IITCGKGHLYFWTLRGGSL----VKRQGIFEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQV-----H 284 (626)
T ss_pred EEEeCCceEEEEEccCCce----EEEeeccccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEe-----e
Confidence 7666788999999887541 111222222 236799999999874 999999999999999887777766 5
Q ss_pred CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC---------------------------------------ccee
Q 016458 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---------------------------------------RAVR 244 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------------------------------~~~~ 244 (389)
.|.+.|.+++... ++. |++|+.|..|..||-.-.. ....
T Consensus 285 aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 285 AHDGGVFSLCMLR-DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred ecCCceEEEEEec-Ccc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 8999999999985 554 5569999999999832110 0011
Q ss_pred EEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEE
Q 016458 245 TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (389)
Q Consensus 245 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (389)
...+|......++.+|+.+.+++++.|+.+++|+ ..+......... +..++.|+|.| .+++|+..|...+.
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d------~~~~~~fhpsg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED------PAECADFHPSG-VVAVGTATGRWFVL 433 (626)
T ss_pred EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC------ceeEeeccCcc-eEEEeeccceEEEE
Confidence 2245777788999999999999999999999999 334444333322 37899999999 99999999999999
Q ss_pred EcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 325 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 325 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
|.++...+..- ....+++++.|+|+|.+||.|+.|+.|+| +.+..+
T Consensus 434 d~e~~~lv~~~-----~d~~~ls~v~ysp~G~~lAvgs~d~~iyi----y~Vs~~ 479 (626)
T KOG2106|consen 434 DTETQDLVTIH-----TDNEQLSVVRYSPDGAFLAVGSHDNHIYI----YRVSAN 479 (626)
T ss_pred ecccceeEEEE-----ecCCceEEEEEcCCCCEEEEecCCCeEEE----EEECCC
Confidence 99985555443 33889999999999999999999999999 888754
No 128
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.3e-29 Score=215.32 Aligned_cols=261 Identities=23% Similarity=0.309 Sum_probs=181.1
Q ss_pred eeEEEe-eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC---cceeeecccccceEEEEEee---CCC-c
Q 016458 101 KTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL---PVSRMLSGHKGYVSCCQYVP---DED-T 172 (389)
Q Consensus 101 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~---~~~-~ 172 (389)
..+.+. .|.+.|.++.|+++|+|||+||.|+.|+||.+.......... ..........+.+..+..++ .+. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344455 789999999999999999999999999999987622100000 00000000000011111111 000 0
Q ss_pred EEEEeeCCCeEEEEeCC----CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee
Q 016458 173 HLITSSGDQTCVLWDIT----TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG 248 (389)
Q Consensus 173 ~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 248 (389)
..-.+..... .+.+.. ..+++..+ .+|...|..+.|+ .+++|++++.|.+|++|++... .++..|.
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef-----~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~-~CL~~F~- 407 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEF-----KGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRK-ECLKVFS- 407 (712)
T ss_pred ccccccCCcc-ccCCCccccccccchhhh-----hccchhheecccc--cCCeeEeccccccEEeecCCCc-ceeeEEe-
Confidence 0111112222 122211 12344445 7999999999999 5679999999999999999966 7888776
Q ss_pred eccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 249 HEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 249 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
|...|+|++|+| |.+||++|+-||.|+||++...+...-.... . .|++++|.|||++.++|+.+|.+++|+..
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~-----lITAvcy~PdGk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-D-----LITAVCYSPDGKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-h-----hheeEEeccCCceEEEEEeccEEEEEEcc
Confidence 999999999999 8899999999999999999876655544333 2 39999999999999999999999999998
Q ss_pred cceEEEeecCcC-----CCCCCCeeEEEECC-CCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 328 LAKVVLNLGSLQ-----NSHEGRITCLGLSA-DGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 328 ~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
..+......... ..|. .|+++.|.| +...+++.+.|..|+| +|..+.++.
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI----~d~~~~~lv 537 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRI----YDGRDKDLV 537 (712)
T ss_pred CCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEE----Eeccchhhh
Confidence 777665443211 1233 899999997 3345777889999999 998665543
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=2.1e-26 Score=188.03 Aligned_cols=298 Identities=17% Similarity=0.277 Sum_probs=224.0
Q ss_pred ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe---e-CCCcEEEEEECCCCcEEEE
Q 016458 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK---L-PCAWVMTCAFSPTGQSVAC 126 (389)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~ 126 (389)
.|+=.........+.-.+.|....|+|.+..|+.....|.+..|+.+.+....... . ....|.|++|.++|. +++
T Consensus 184 VWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viT 262 (626)
T KOG2106|consen 184 VWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VIT 262 (626)
T ss_pred hhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEe
Confidence 34333334444555566789999999976655555556899999998887665432 2 225799999999987 688
Q ss_pred ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC-------
Q 016458 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG------- 199 (389)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------- 199 (389)
|..+|.|.||+..... ..+....|.+.|.+++...+| .|++|+.|..|..||-. -+.......
T Consensus 263 gDS~G~i~Iw~~~~~~-------~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 263 GDSGGNILIWSKGTNR-------ISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDN-YRKLRETELPEQFGPI 332 (626)
T ss_pred ecCCceEEEEeCCCce-------EEeEeeecCCceEEEEEecCc--cEeecCccceEEecccc-ccccccccCchhcCCe
Confidence 9999999999986643 455555999999999999987 47779999999999832 111100000
Q ss_pred -----------------------------cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec
Q 016458 200 -----------------------------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 250 (389)
Q Consensus 200 -----------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 250 (389)
....+|......++.+| ..+.+++++.|+.+++|+ . . ++.-. ..-.
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~-~-~-k~~wt-~~~~ 407 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN-D-H-KLEWT-KIIE 407 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc-C-C-ceeEE-EEec
Confidence 01135667788889999 778899999999999999 2 2 33322 2346
Q ss_pred cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc-
Q 016458 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA- 329 (389)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 329 (389)
.+..|+.|+|.| .++.|+..|...+.|.++...+..... ..+++.+.|+|+|.+||+|+.|+.|+||-+...
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec------CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 789999999999 999999999999999988444433322 235999999999999999999999999998754
Q ss_pred eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
....... ..+..+|+.+.|++|+++|.+-+.|-.|-. |....
T Consensus 481 ~~y~r~~---k~~gs~ithLDwS~Ds~~~~~~S~d~eiLy----W~~~~ 522 (626)
T KOG2106|consen 481 RKYSRVG---KCSGSPITHLDWSSDSQFLVSNSGDYEILY----WKPSE 522 (626)
T ss_pred cEEEEee---eecCceeEEeeecCCCceEEeccCceEEEE----Ecccc
Confidence 4444443 345589999999999999999999998888 95443
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1e-27 Score=208.94 Aligned_cols=251 Identities=19% Similarity=0.312 Sum_probs=211.0
Q ss_pred eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE
Q 016458 106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (389)
Q Consensus 106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 185 (389)
..|....+.++|.|+|.+|++++.||.|++|+...... ....+..+...|.+++... .+|++|+.+++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------EPETIDISGELVSSIACYS---NHFLTGSEQNTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------CCchhhccCceeEEEeecc---cceEEeeccceEEE
Confidence 35677789999999999999999999999999877521 1222222667777776654 47999999999999
Q ss_pred EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE
Q 016458 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265 (389)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 265 (389)
|.+..+..-..+ ....-++++++++. ++.+++.|+.|-.|++.+.... .....+.+|.++|.++.|+|++++|
T Consensus 81 y~fps~~~~~iL-----~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fL 153 (933)
T KOG1274|consen 81 YKFPSGEEDTIL-----ARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFL 153 (933)
T ss_pred eeCCCCCcccee-----eeeeccceEEEEec-CCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEE
Confidence 999998776555 45677899999998 8899999999999999999987 7788899999999999999999999
Q ss_pred EEEecCCeEEEEECCCCceeeEeeccCCCCC---CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENE---IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (389)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (389)
|+.+.||.|++||+.++.....+......+. ...++.++|+|+|..+++...|+.|.+|+..++.....+.. ..+
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~--~~~ 231 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD--KLS 231 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc--ccc
Confidence 9999999999999999887766644332221 33578899999988888888999999999999999888864 345
Q ss_pred CCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 343 EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 343 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
...+.+++|+|+|+|||+++.||.|.| ||+++
T Consensus 232 ss~~~~~~wsPnG~YiAAs~~~g~I~v----Wnv~t 263 (933)
T KOG1274|consen 232 SSKFSDLQWSPNGKYIAASTLDGQILV----WNVDT 263 (933)
T ss_pred ccceEEEEEcCCCcEEeeeccCCcEEE----Eeccc
Confidence 555999999999999999999999999 99994
No 131
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-28 Score=200.65 Aligned_cols=287 Identities=18% Similarity=0.248 Sum_probs=224.4
Q ss_pred CCCCcccCCCcceeeeecccccC--cEEEEEEcCCCCeEEE--EecCCcEEEEeCCCC--CeeEEEeeCCCcEEEEEECC
Q 016458 46 GRAPVSFGPTDLVCCRTLQGHAG--KVYSLDWTSERNRIVS--ASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCAFSP 119 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~--~v~~~~~~~~~~~l~~--~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~ 119 (389)
....+.|+...+.....+..|+. .+.++.|+.... |++ .+.|..+++|.-... +....-......-.|++...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence 34455666666555555555544 488999988764 444 456788999964322 12222222223445555555
Q ss_pred CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (389)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 199 (389)
...++++|+..+.|+|||+.... +.+.+++|...|+++.|+... .++++++..|.|.+..+.++.....+.
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl-------~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~- 160 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKL-------IHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFT- 160 (673)
T ss_pred cceeeeccCcCceeeehhhHHHH-------HhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCcccccee-
Confidence 66899999999999999998633 677889999999999999875 799999999999999999998887773
Q ss_pred cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEE
Q 016458 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFD 278 (389)
Q Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d 278 (389)
......|.-+.++|....+|.+++.+|.|.+||.....+.......|..+...|+|+| +..+|++.+.|..|.+||
T Consensus 161 ---~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 161 ---IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred ---cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 2334567799999988889999999999999999987555666678999999999999 667889999999999999
Q ss_pred CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc-eEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
.+..+....+...+ +.+.++|+++|.+|++|+..|.|..||++.. .++..+ ..|...|++++|-+..
T Consensus 238 ~~s~~s~~~l~y~~------Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~----sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 238 IRSQASTDRLTYSH------PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR----SAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccccceeeecC------CcceeeecCCceEEEeecCCceEEEEecccCCCCceEe----eecccceeEEEeeecc
Confidence 99777666654433 4899999999999999999999999999865 455555 7899999999998754
No 132
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2e-27 Score=182.46 Aligned_cols=242 Identities=17% Similarity=0.280 Sum_probs=194.6
Q ss_pred CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (389)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 187 (389)
+...|..+.|+|.++.|++++.||.+++|++.... ......|..++.+++|.++ ..+++|+.||.|+.+|
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--------l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--------LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYD 81 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--------hhhheecCCceeeeeccCC--ceEEEeccCceEEEEE
Confidence 45679999999999999999999999999998742 2333458899999999985 5799999999999999
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEE
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 267 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 267 (389)
+.++..... ..|..++.++..++ ..+.+++|+.|++|++||.+.. .....+. ....|.++.. .++.|++
T Consensus 82 ln~~~~~~i------gth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v--~g~~LvV 150 (323)
T KOG1036|consen 82 LNTGNEDQI------GTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDV--SGNRLVV 150 (323)
T ss_pred ecCCcceee------ccCCCceEEEEeec-cCCeEEEcccCccEEEEecccc-ccccccc-cCceEEEEec--cCCEEEE
Confidence 999877665 47999999999998 7788999999999999999964 3443433 3347877776 4778999
Q ss_pred EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc----eEEEeecCcCCCCC
Q 016458 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGSLQNSHE 343 (389)
Q Consensus 268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~ 343 (389)
|+.|..+.+||+++......... ..-...+.++++-|++.-.++++-||.|.+=.++.. +....+ +.|.
T Consensus 151 g~~~r~v~iyDLRn~~~~~q~re---S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF----kCHr 223 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQRRE---SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF----KCHR 223 (323)
T ss_pred eecCceEEEEEcccccchhhhcc---ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE----Eeee
Confidence 99999999999998765553222 222235899999998888899999999988766554 223333 3332
Q ss_pred ---------CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458 344 ---------GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 344 ---------~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
.+|++|+|+|--..|+|||.||.|.+ ||+.+.+-
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~----Wd~~~rKr 266 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI----WDLFNRKR 266 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCCceEEE----ccCcchhh
Confidence 38999999999889999999999999 99988653
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=5.6e-28 Score=202.46 Aligned_cols=293 Identities=17% Similarity=0.231 Sum_probs=212.3
Q ss_pred EEEcC---CCCeEEEEecCCcEEEEeCCCCCe------eEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC
Q 016458 73 LDWTS---ERNRIVSASQDGRLIVWNALTSQK------THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD 143 (389)
Q Consensus 73 ~~~~~---~~~~l~~~~~dg~v~iw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 143 (389)
..|++ ....|+.+..||.|.++|...... +.....|...|..+.|-|....|++++.|.++++||+.....
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55655 234799999999999999765433 245567889999999999778899999999999999998652
Q ss_pred CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE--------------------EEecCc--c
Q 016458 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT--------------------SVFGGE--F 201 (389)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------------------~~~~~~--~ 201 (389)
. -...+.+|.+.|.+++|.|.++..|++|+.||.|.|||++-...- ...... .
T Consensus 135 ~-----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 135 V-----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred e-----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 1 223478999999999999999999999999999999998743210 000000 0
Q ss_pred cCCCCCCeeE---EEeeCCCCcEEEEeeC-CCceEEEeCCCCCcce-------eEEeee---ccceEEEEEecCCCEEEE
Q 016458 202 QSGHTADVLS---VSISGSNSRMFVSGSC-DSTARLWDTRVASRAV-------RTFHGH---EGDVNTVKFFPDGNRFGT 267 (389)
Q Consensus 202 ~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-------~~~~~~---~~~i~~~~~~~~~~~l~~ 267 (389)
...+...|.+ +.+.. +...|++++. |+.|++||++...... ..+.-| .-.+.++.....|.+|++
T Consensus 210 ~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A 288 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA 288 (720)
T ss_pred cccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence 0123333433 33443 6677888777 9999999999763221 112222 235778888888899999
Q ss_pred EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee
Q 016458 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 347 (389)
Q Consensus 268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 347 (389)
.+.|+.|++|++.+...-.........+... ...-..+|++.++++|+.|...++|.+.+.+....+. .+|.-.|+
T Consensus 289 sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf-~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l---~Ght~eVt 364 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSLSISPVAEFSGKLNSSF-YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL---LGHTREVT 364 (720)
T ss_pred EecCCcEEEEeccccCcCchhhccCccccee-eeeeecCCCCceEeccCCCcceeeeeecCccCChhhh---hCcceEEE
Confidence 9999999999998754332222222221111 2334578999999999999999999998866554443 79999999
Q ss_pred EEEECCC-CCeEEeeeCCCeeEEeecceecccC
Q 016458 348 CLGLSAD-GSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 348 ~~~~~~~-~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
+++|.|. -.-+++++.|-.++| |++.++
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~ki----W~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKI----WRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEE----EeccCc
Confidence 9999873 335778899999999 999766
No 134
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.9e-27 Score=201.04 Aligned_cols=300 Identities=22% Similarity=0.276 Sum_probs=236.1
Q ss_pred ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEe-----eCCCcEEEEEECCCCcEEEEecCCCcEE
Q 016458 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIK-----LPCAWVMTCAFSPTGQSVACGGLDSVCS 134 (389)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 134 (389)
.+.||.+-|.++.|+|.+..|++++.|.++.+|...+.. -+.... +.......+.|+|+++.+++-+..|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 455999999999999999999999999999999765542 222222 2334588899999999999999999999
Q ss_pred EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEE
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
+|.... ...+.......+|.+.|.++.|.|.| .+|++.+.|.+-|++-.-.. ..-..+. .+..|...++|++
T Consensus 342 lWkt~d----~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEia--RPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 342 LWKTKD----KTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIA--RPQIHGYDLTCLS 414 (764)
T ss_pred EEeccC----ccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeec--ccccccccceeee
Confidence 999332 23444566778999999999999998 69999999999999876522 2222222 2257888899999
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCC-------------------------------------------CC----------
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRV-------------------------------------------AS---------- 240 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~-------------------------------------------~~---------- 240 (389)
+-+ ....|++|.....+|+|+... +.
T Consensus 415 ~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 415 FVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred hcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 997 477888999899999997420 00
Q ss_pred ----------------------cceeEEeeeccceEEEEEecCCCEEEEEecCC-----eEEEEECCCCceeeEeeccCC
Q 016458 241 ----------------------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHG 293 (389)
Q Consensus 241 ----------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~ 293 (389)
+.++.+.+|...|.+++.+|+++++++++... .|++|+..+......+..+.-
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL 573 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL 573 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce
Confidence 11233467888999999999999999998653 599999988877776655443
Q ss_pred CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE-EeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeec
Q 016458 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLG 372 (389)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~ 372 (389)
.|+.++|||||++|++.+.|..+.+|........ ..+. ..+.|.--|.+..|+|++.+++|+|.|.+|++
T Consensus 574 -----TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa-~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV--- 644 (764)
T KOG1063|consen 574 -----TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFA-CLKAHTRIIWDCSWSPDEKYFATASRDKKVKV--- 644 (764)
T ss_pred -----EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhc-cccccceEEEEcccCcccceeEEecCCceEEE---
Confidence 4999999999999999999999999987543221 1111 12789999999999999999999999999999
Q ss_pred ceecccC
Q 016458 373 FWRVQEG 379 (389)
Q Consensus 373 ~W~~~~~ 379 (389)
|....+
T Consensus 645 -W~~~~~ 650 (764)
T KOG1063|consen 645 -WEEPDL 650 (764)
T ss_pred -EeccCc
Confidence 999887
No 135
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=8.8e-28 Score=189.13 Aligned_cols=257 Identities=20% Similarity=0.315 Sum_probs=196.7
Q ss_pred ceeeeecccccCcEEEEEEcCCCC--eEEEEecCCcEEEEeCC----------------CCCeeEEEeeCCCcEEEEEEC
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERN--RIVSASQDGRLIVWNAL----------------TSQKTHAIKLPCAWVMTCAFS 118 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~--~l~~~~~dg~v~iw~~~----------------~~~~~~~~~~~~~~v~~~~~~ 118 (389)
++......+|.+.++.+.-++-++ +.++-+..|.|+||++. ..+++.++.+|...=+.++||
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS 220 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS 220 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence 444455667888899888888654 56667788999999973 235678888898888999999
Q ss_pred CC-CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEe
Q 016458 119 PT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 197 (389)
Q Consensus 119 ~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 197 (389)
|- ...|++|..-+.|++|...++.-. .-...+.+|+..|-.++|+|.....|++|+.||+|+|||++.+.....+
T Consensus 221 p~~~g~LlsGDc~~~I~lw~~~~g~W~----vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 221 PIKTGRLLSGDCVKGIHLWEPSTGSWK----VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred cccccccccCccccceEeeeeccCcee----ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 93 345888888899999998874411 1233456799999999999998899999999999999999998433322
Q ss_pred cCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC--CcceeEEeeeccceEEEEEec-CCCEEEEEecCCeE
Q 016458 198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTC 274 (389)
Q Consensus 198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i 274 (389)
.. ..|.+.|+.+.|+. ...+|++|+.||+++|||+|.. .+++..+.-|..+|+++.|+| +...|++++.|..|
T Consensus 297 ~~---kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 297 ST---KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred Ee---eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence 21 68999999999998 5559999999999999999974 367889999999999999999 45678889999999
Q ss_pred EEEECCCCce----------------eeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEE
Q 016458 275 RLFDIRTGHQ----------------LQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWD 325 (389)
Q Consensus 275 ~i~d~~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d 325 (389)
.+||+..... .+.+..+.+. ..+..+.|++.-. ++++.+.|| +.||.
T Consensus 373 tiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ---ke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 373 TIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ---KEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred EEEEeeccCChhhhccccccchhcCCceeEEEecch---hHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 9999864322 1111121111 2367788888654 677777776 55553
No 136
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=1.3e-27 Score=202.10 Aligned_cols=257 Identities=22% Similarity=0.340 Sum_probs=217.9
Q ss_pred cccccCCCCCcccCCCc--ceeeeecccccCcEEE-EEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEE
Q 016458 40 GYSRSQGRAPVSFGPTD--LVCCRTLQGHAGKVYS-LDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115 (389)
Q Consensus 40 ~~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~v~~-~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~ 115 (389)
..+.++++....|.+.. ....+.+.+|.+-|.+ +++-+ ++-.+++|+.|++|.+|......+...+.+|...|.++
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~l 107 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSL 107 (745)
T ss_pred EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeee
Confidence 34556666677787743 3444678899998888 88886 44579999999999999999999999999999999999
Q ss_pred EECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEE
Q 016458 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195 (389)
Q Consensus 116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 195 (389)
....++. +++|+.|.++++|.... +...+.+|...|+++...|.+ .+++|+.|.+|++|.- ++.+.
T Consensus 108 s~~~~~~-~iSgSWD~TakvW~~~~---------l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~ 173 (745)
T KOG0301|consen 108 SIGEDGT-LISGSWDSTAKVWRIGE---------LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLK 173 (745)
T ss_pred ecCCcCc-eEecccccceEEecchh---------hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhh
Confidence 9887777 99999999999999876 566699999999999999975 7999999999999985 67788
Q ss_pred EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEE
Q 016458 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (389)
Q Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (389)
++ .+|.+.|+.+++.+ + ..|++++.||.|++|++. +..+..+.+|++-+.+++..+++..+++++.|++++
T Consensus 174 tf-----~gHtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 174 TF-----SGHTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred hh-----ccchhheeeeEEec-C-CCeEeecCCceEEEEecc--CceeeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 88 79999999999996 3 357899999999999994 378899999999999999888889999999999999
Q ss_pred EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
+|+.. .+.+.+..+... |.++.+-++|. +++|++||.|+||...
T Consensus 245 iW~~~--e~~q~I~lPtts-----iWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTS-----IWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EeecC--ceEEEEecCccc-----eEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 99976 566666554432 78888777775 5678899999999764
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=1e-25 Score=190.10 Aligned_cols=279 Identities=13% Similarity=0.096 Sum_probs=203.5
Q ss_pred CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeE-EEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE
Q 016458 45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123 (389)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (389)
.+.....|++...+....+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~ 86 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKI 86 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCE
Confidence 345566778777777888877654 6789999999876 5677889999999999888776665443 577899999997
Q ss_pred EEEe-cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC-eEEEEeCCCCeeEEEecCcc
Q 016458 124 VACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-TCVLWDITTGLRTSVFGGEF 201 (389)
Q Consensus 124 l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~ 201 (389)
++++ ..++.+++||+.+.. ....+. +...+.+++|+|++ .+++++..++ .+.+||..++.......
T Consensus 87 l~~~~~~~~~l~~~d~~~~~-------~~~~~~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~--- 154 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRK-------VLAEIP-VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVL--- 154 (300)
T ss_pred EEEEcCCCCeEEEEECCCCe-------EEeEee-CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEE---
Confidence 7655 568999999998633 223332 22346789999998 5677766654 57788998877665541
Q ss_pred cCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEeCCCCCcceeEEeeec-------cceEEEEEecCCCEEEEE-ecCC
Q 016458 202 QSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHE-------GDVNTVKFFPDGNRFGTG-SDDG 272 (389)
Q Consensus 202 ~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~-~~dg 272 (389)
....+.+++|+| ++..+ +++..++.|++||+++. +.+..+..+. .....++|+|++++++++ +.++
T Consensus 155 ---~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 155 ---VDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred ---cCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 223457789998 56655 55556999999999876 4444443221 123568899999986554 5567
Q ss_pred eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE-ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEE
Q 016458 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 351 (389)
Q Consensus 273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 351 (389)
.+.+||+++++......... .+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..+. . ....+.+++
T Consensus 230 ~i~v~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~----~-~~~~~~~~~ 298 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLVGQ------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK----V-GRLPWGVVV 298 (300)
T ss_pred eEEEEECCCCcEEEEEEeCC------CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----c-ccccceeEe
Confidence 89999999887765543221 37899999999999886 468999999999999988883 3 345588887
Q ss_pred CC
Q 016458 352 SA 353 (389)
Q Consensus 352 ~~ 353 (389)
+|
T Consensus 299 ~~ 300 (300)
T TIGR03866 299 RP 300 (300)
T ss_pred CC
Confidence 65
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.3e-29 Score=213.58 Aligned_cols=257 Identities=22% Similarity=0.416 Sum_probs=222.8
Q ss_pred CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
.+++....+-.+++|+... +..|...+.++..-..++.+++|+.|..+.+|.+.... ....+.+|..
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-------~i~S~~~hes 71 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-------AITSLTGHES 71 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-------hhheeeccCC
Confidence 3445555566677887543 34566677787776778899999999999999987644 3445899999
Q ss_pred ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (389)
+|.++.|++.. .++++|+.+|+|++||++..+.+..+ .+|...+.++.|+| -+.+++.|+.|+.+.+||++..
T Consensus 72 pIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtL-----tgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 72 PIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTL-----TGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred cceeeecCcch-hhhcccccCCceeeeehhhhhhhhhh-----hccccCcceeeecc-ceEEeccccccccceehhhhcc
Confidence 99999999986 78999999999999999999988888 79999999999999 8889999999999999999976
Q ss_pred CcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (389)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (389)
.+...+.+|...+..+.|+|+|+++++++.|..+++||+..|+....|..+... +..+.|+|..-+++.|+.|+
T Consensus 145 -Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~-----v~sle~hp~e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 145 -GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK-----VQSLEFHPLEVLLAPGSSDR 218 (825)
T ss_pred -CceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccc-----ccccccCchhhhhccCCCCc
Confidence 688889999999999999999999999999999999999999999888765554 88899999999999999999
Q ss_pred cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCe
Q 016458 320 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366 (389)
Q Consensus 320 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 366 (389)
.+++||+++.+.+... ......|.+.+|+|+++.+++|..+..
T Consensus 219 tv~f~dletfe~I~s~----~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 219 TVRFWDLETFEVISSG----KPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred eeeeeccceeEEeecc----CCccCCceeeeecCCceeeecCchhhh
Confidence 9999999999988887 566789999999999999888876543
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1e-25 Score=190.21 Aligned_cols=290 Identities=19% Similarity=0.273 Sum_probs=231.3
Q ss_pred eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe-eEEEeeC-CCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIKLP-CAWVMTCAFSPTGQSVACGGLDSVCSI 135 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (389)
..++.+.--..+|.++||+.+.+.||.+-.||.|.+|++..+=. ...+.++ ...|.+++|+ ++..|++.+.+|.|.-
T Consensus 16 hrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~E 94 (691)
T KOG2048|consen 16 HRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITE 94 (691)
T ss_pred EEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEE
Confidence 33444555567899999999999999999999999999987543 3334443 4679999999 5556788888999999
Q ss_pred EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
||+.+.+ .........+.|++++.+|.+ ..++.|+.||.+..++...+........ ....+.+.+++|+
T Consensus 95 wDl~~lk-------~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l---~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 95 WDLHTLK-------QKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSL---MRQKSRVLSLSWN 163 (691)
T ss_pred EecccCc-------eeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeec---ccccceEEEEEec
Confidence 9998755 566677778999999999997 6899999999888888877765544321 3456899999999
Q ss_pred CCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-------e-eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeE
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------G-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 287 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 287 (389)
| .+..+++|+.||.|++||...+ ..+.... . ...-|.++.|-.+ ..|++|...|+|.+||...+..+..
T Consensus 164 ~-~~~~i~~Gs~Dg~Iriwd~~~~-~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 164 P-TGTKIAGGSIDGVIRIWDVKSG-QTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred C-CccEEEecccCceEEEEEcCCC-ceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhh
Confidence 9 8888999999999999999987 3333111 1 2224677777744 4799999999999999999999988
Q ss_pred eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCee
Q 016458 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 367 (389)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 367 (389)
+..+... |.+++..+++.++++++.|+.|.-|...+.+...........|...|.+++..++ .|++||.|..+
T Consensus 241 ~~~h~ad-----Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l 313 (691)
T KOG2048|consen 241 HSCHDAD-----VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTL 313 (691)
T ss_pred hhhhhcc-----eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEE
Confidence 8776665 9999999999999999999999999887765433333333678889999999877 89999999999
Q ss_pred EE
Q 016458 368 KV 369 (389)
Q Consensus 368 ~i 369 (389)
.+
T Consensus 314 ~i 315 (691)
T KOG2048|consen 314 AI 315 (691)
T ss_pred EE
Confidence 87
No 140
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.4e-26 Score=195.94 Aligned_cols=321 Identities=17% Similarity=0.237 Sum_probs=231.5
Q ss_pred cccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCC---eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEE
Q 016458 40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERN---RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116 (389)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~---~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~ 116 (389)
.++.........++|........+.||.++|+|+.|-|..+ ++++|+.||.|.+|.++................+++
T Consensus 27 ~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~c 106 (764)
T KOG1063|consen 27 LVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVC 106 (764)
T ss_pred eEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEE
Confidence 34555567777899999999999999999999999999887 899999999999999985544443333333456666
Q ss_pred ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc--ccceEEEEEeeC-CCcEEEEeeCCCeEEEEeCCCC--
Q 016458 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH--KGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTG-- 191 (389)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-- 191 (389)
++.......+...|+.+.+|+.+... ..+...+... ..-..|+++.++ +.-+++.|+.+..|.++.-...
T Consensus 107 v~a~~~~~~~~~ad~~v~vw~~~~~e-----~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f 181 (764)
T KOG1063|consen 107 VVARSSVMTCKAADGTVSVWDKQQDE-----VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF 181 (764)
T ss_pred EEeeeeEEEeeccCceEEEeecCCCc-----eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce
Confidence 66555555555789999999994422 1122222211 223356666663 3344566777888888876544
Q ss_pred eeEEEecCcccCCCCCCeeEEEeeCCC--CcEEEEeeCCCceEEEeCCCCC--------------------ccee-----
Q 016458 192 LRTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVAS--------------------RAVR----- 244 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~----- 244 (389)
.....+ .+|.+.|.+++|.... .-+|++++.|..|+||.+.-.. ....
T Consensus 182 ~~v~el-----~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~ 256 (764)
T KOG1063|consen 182 ARVAEL-----EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYR 256 (764)
T ss_pred eEEEEe-----eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEE
Confidence 344445 7999999999998643 3578899999999999765332 0111
Q ss_pred -----EEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee--EeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458 245 -----TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (389)
Q Consensus 245 -----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (389)
.+.+|+..|.++.|+|.+..|++++.|.++.+|...+..-+. ..................|+|+++.+++-+.
T Consensus 257 is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~ 336 (764)
T KOG1063|consen 257 ISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR 336 (764)
T ss_pred EehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc
Confidence 123899999999999999999999999999999876653332 2222222222334788999999999999999
Q ss_pred CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEee
Q 016458 318 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNL 371 (389)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~ 371 (389)
.|..++|..... ..........+|...|++++|+|.|.+|+++|.|.+-|+|.
T Consensus 337 ~Gg~hlWkt~d~-~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 337 TGGFHLWKTKDK-TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred cCcEEEEeccCc-cceeeccccccccccceeeeecCCCCEEEEeccccceeeec
Confidence 999999983332 22222222389999999999999999999999999999943
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=191.26 Aligned_cols=248 Identities=16% Similarity=0.235 Sum_probs=196.1
Q ss_pred EEEEEEcC-------CCCeEEEEecCCcEEEEeCCCCC---e------------------eEEEeeCCCcEEEEEECCC-
Q 016458 70 VYSLDWTS-------ERNRIVSASQDGRLIVWNALTSQ---K------------------THAIKLPCAWVMTCAFSPT- 120 (389)
Q Consensus 70 v~~~~~~~-------~~~~l~~~~~dg~v~iw~~~~~~---~------------------~~~~~~~~~~v~~~~~~~~- 120 (389)
..|++|.. .|+++|.|+.|..|.|||+.-.. + -....+|...|.+++|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35677754 25799999999999999974211 1 1112357777888888774
Q ss_pred CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (389)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 200 (389)
.+.||+|+.|.+|++||+.+++ +..++..|.+.|.++.|+|..+..|++|+.|++|.+.|.+........
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~-------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--- 325 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGK-------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--- 325 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCC-------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce---
Confidence 5678999999999999999877 677788899999999999999999999999999999999853322221
Q ss_pred ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEEC
Q 016458 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI 279 (389)
Q Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 279 (389)
-...+.|-.++|.|...+.+++++.||.|+-+|+|..++++.++.+|.++|.++++++ ...++++++.|+.|++|++
T Consensus 326 --wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 326 --WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred --EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence 2456789999999988999999999999999999999999999999999999999998 4557899999999999998
Q ss_pred CCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccceEE
Q 016458 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVV 332 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~ 332 (389)
.............. .....|+++.|+-. .++.|+..+.++|||+.+...+
T Consensus 404 ~~~~~~~v~~~~~~---~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 404 DVDSPKSVKEHSFK---LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cCCCCccccccccc---ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 76554333222111 11256777778755 6777888888999998876554
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=6.3e-29 Score=210.96 Aligned_cols=239 Identities=22% Similarity=0.396 Sum_probs=216.7
Q ss_pred eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (389)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++...+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45667999999999977888999999999999999988888888999999999999999999999999999999999997
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (389)
.. ..+++.+|...+..+.|+|-+ .++++|+.|+.+++||++...+...+ .+|...+..+.|+| ++.
T Consensus 102 Ak-------~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~-----~s~~~vv~~l~lsP-~Gr 167 (825)
T KOG0267|consen 102 AK-------IVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTY-----KSHTRVVDVLRLSP-DGR 167 (825)
T ss_pred hh-------hhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeee-----cCCcceeEEEeecC-CCc
Confidence 55 667899999999999999998 68899999999999999988888888 67999999999999 999
Q ss_pred EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (389)
+++.++.|..+++||...+ +....|..|.+.+..+.|+|..-++++|+.|+++++||+++...+...... ...|
T Consensus 168 ~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-----~~~v 241 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-----TDGV 241 (825)
T ss_pred eeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-----cCCc
Confidence 9999999999999999887 888899999999999999999999999999999999999987666655443 3359
Q ss_pred eEEEeCCCCCEEEEEecCC
Q 016458 301 TSIAFSISGRLLFAGYSNG 319 (389)
Q Consensus 301 ~~~~~~~~~~~l~~~~~dg 319 (389)
.+..|+|++..+++|....
T Consensus 242 ~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 242 RSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeecCCceeeecCchhh
Confidence 9999999999999887653
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.5e-27 Score=194.66 Aligned_cols=250 Identities=24% Similarity=0.389 Sum_probs=205.6
Q ss_pred eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeec--ccccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458 107 LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSGDQTCV 184 (389)
Q Consensus 107 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 184 (389)
.|.+-|.++.++...+.+++|+ .|.|+|||+.....+. ....+. .....|.++...|+| +.|++|+.-.++.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~----PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastls 490 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKS----PVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLS 490 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCC----ccccccccCcccceeeeEecCCC-ceEEeccccceee
Confidence 3556677788998999999987 5789999998754221 122221 235678999999998 6799999999999
Q ss_pred EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCE
Q 016458 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 264 (389)
Q Consensus 185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (389)
|||+........... ......+.+++.+| +.++.+++..||.|.|||+.+. ..++.+.+|...+.||..+++|..
T Consensus 491 iWDLAapTprikael---tssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtk 565 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAEL---TSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTK 565 (705)
T ss_pred eeeccCCCcchhhhc---CCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCce
Confidence 999987654333211 23335678899999 8899999999999999999987 889999999999999999999999
Q ss_pred EEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCC
Q 016458 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 344 (389)
Q Consensus 265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (389)
|.+|+-|++|+.||+++++.+....... .|.++..+|.+.+|++|-.++.+.|...... ....+ ..|++
T Consensus 566 lWTGGlDntvRcWDlregrqlqqhdF~S------QIfSLg~cP~~dWlavGMens~vevlh~skp-~kyql----hlheS 634 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQQHDFSS------QIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQL----HLHES 634 (705)
T ss_pred eecCCCccceeehhhhhhhhhhhhhhhh------hheecccCCCccceeeecccCcEEEEecCCc-cceee----ccccc
Confidence 9999999999999999998776654432 4899999999999999999999999886543 33445 68999
Q ss_pred CeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 345 RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 345 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
.|.++.|.+.|+++++.+.|+.+.. |...-|.-+
T Consensus 635 cVLSlKFa~cGkwfvStGkDnlLna----wrtPyGasi 668 (705)
T KOG0639|consen 635 CVLSLKFAYCGKWFVSTGKDNLLNA----WRTPYGASI 668 (705)
T ss_pred EEEEEEecccCceeeecCchhhhhh----ccCccccce
Confidence 9999999999999999999999999 999877544
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=3.1e-26 Score=174.91 Aligned_cols=219 Identities=25% Similarity=0.353 Sum_probs=177.0
Q ss_pred eeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcc--------eeeecccccceEEEEEeeCCCcEEEE
Q 016458 106 KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPV--------SRMLSGHKGYVSCCQYVPDEDTHLIT 176 (389)
Q Consensus 106 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~~ 176 (389)
..|.+.|+++...+ .|+++++|+.||.|.+||++........... ..-..+|+-.|.++.|-|-...+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 34667888888877 7899999999999999999875522211111 11234688899999999987789999
Q ss_pred eeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC--CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceE
Q 016458 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVN 254 (389)
Q Consensus 177 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~ 254 (389)
++.|.++++||..+.+....| ..++.|.+-+++|-. ..++++|..+-.|++.|+.++ .....+.+|...|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVL 192 (397)
T ss_pred ccccceEEEeecccceeeEEe------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceE
Confidence 999999999999999888887 456778888888733 457888999999999999998 88899999999999
Q ss_pred EEEEecCCCE-EEEEecCCeEEEEECCCC-ceeeEeeccC---------CCCCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458 255 TVKFFPDGNR-FGTGSDDGTCRLFDIRTG-HQLQVYYQQH---------GENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (389)
Q Consensus 255 ~~~~~~~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (389)
++.|+|...+ |++|+.||.|++||++.. .+...+..+. ...+.+.+..++|+.++.++++.+.|..+++
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 9999997665 689999999999999875 3444333322 2345567999999999999999999999999
Q ss_pred EEcccceE
Q 016458 324 WDTLLAKV 331 (389)
Q Consensus 324 ~d~~~~~~ 331 (389)
|+..+|+.
T Consensus 273 wn~~~G~n 280 (397)
T KOG4283|consen 273 WNMESGRN 280 (397)
T ss_pred eecccCcc
Confidence 99987654
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=173.26 Aligned_cols=286 Identities=19% Similarity=0.275 Sum_probs=210.6
Q ss_pred EEEEEEcCCCCeEEEEecCCcEEEEeCCCC------------CeeEEEe-eCCCcEEEEEEC-------CCCcEEEEecC
Q 016458 70 VYSLDWTSERNRIVSASQDGRLIVWNALTS------------QKTHAIK-LPCAWVMTCAFS-------PTGQSVACGGL 129 (389)
Q Consensus 70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~------------~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~~ 129 (389)
...+.|+|||..|++-+.|..+.+|++... +....++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456889999999999999999999987321 1111222 123457777774 67789999999
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeeccccc---ceEEEEEeeCCCcEEEEeeCCCeEEEEeC-CCCeeEEEecCc--ccC
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKG---YVSCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLRTSVFGGE--FQS 203 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~--~~~ 203 (389)
+.-|++||.-+++.+ .......|.. ...+++|+||| .+|++ +....|+++|+ +.|..-...... ...
T Consensus 132 ~~PIh~wdaftG~lr-----aSy~~ydh~de~taAhsL~Fs~DG-eqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLR-----ASYRAYDHQDEYTAAHSLQFSPDG-EQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred cCceeeeeccccccc-----cchhhhhhHHhhhhheeEEecCCC-CeEee-cccceEEEeeccCCCCCCcchhhhhcccc
Confidence 999999999886622 2222333433 34689999998 45554 55688999999 444322222111 113
Q ss_pred CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCC
Q 016458 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTG 282 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 282 (389)
+..+-+.+++++|.+...+++|+....+-||.-... .++..+.+|.+.|+.++|.++|+.|++|. .|-.|.+||++..
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 456778999999988889999999999999987766 78888899999999999999999999998 4778999999975
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc-ceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 361 (389)
+.+..-...+... ...-.-....|++++|++|+.||.|++||++. +..+..+ ..+...++.++++|--.+++++
T Consensus 284 ~~pv~~L~rhv~~-TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~----~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 284 RDPVYALERHVGD-TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT----GNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred cchhhhhhhhccC-ccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc----ccccccccceecCcccceeeec
Confidence 5433222222111 11233456678999999999999999999988 6666666 6888999999999998888888
Q ss_pred eCCCeeE
Q 016458 362 SWDTNLK 368 (389)
Q Consensus 362 ~~dg~i~ 368 (389)
+......
T Consensus 359 sGqr~f~ 365 (406)
T KOG2919|consen 359 SGQRIFK 365 (406)
T ss_pred cCceeec
Confidence 7554433
No 146
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=185.71 Aligned_cols=275 Identities=19% Similarity=0.190 Sum_probs=207.5
Q ss_pred eCCCCCeeEEEeeCCCcEEEEEECCCC--cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCc
Q 016458 95 NALTSQKTHAIKLPCAWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172 (389)
Q Consensus 95 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 172 (389)
|+.+-.....+..+.++|++++|+|.. +++|+|...|.|-+||+.... ....-...+..|..+|.++.|+|.+..
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~---~d~d~v~~f~~hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE---KDKDGVYLFTPHSGPVSGLKFSPANTS 248 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC---CccCceEEeccCCccccceEecCCChh
Confidence 333444555667788999999999954 588999999999999996322 223345667889999999999999989
Q ss_pred EEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccc
Q 016458 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252 (389)
Q Consensus 173 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 252 (389)
.+++.+.||+|+.-|++.+.....+.. ......+.++.++. +...++.+..=|...+||.++.+.....+.-|...
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~---~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSL---DTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhc---CccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 999999999999999998755444421 12445577788887 44555566666699999999997778888889999
Q ss_pred eEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc----
Q 016458 253 VNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL---- 327 (389)
Q Consensus 253 i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---- 327 (389)
|.+++++| ...+|++++.|++.+|||++....... .......|...|.+..|||++-.|++.+.|..|+|||..
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa 403 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA 403 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCC-cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence 99999999 556789999999999999987544332 011123444569999999998889999999999999983
Q ss_pred cceEEEeecCcCCCCC--CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 328 LAKVVLNLGSLQNSHE--GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
...+..++..- ..+. -......|.|+..++++|-.-..|-| +|-+.|+++
T Consensus 404 ~~~p~~~I~Hn-~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv----~~~~~~q~v 455 (498)
T KOG4328|consen 404 KDEPLGTIPHN-NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDV----FDGNGGQMV 455 (498)
T ss_pred cCCccceeecc-CcccccccchhheeCCCccEEEEeccCcceeE----EcCCCCEEe
Confidence 33344443210 1111 12345689999999999999999999 998888743
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-27 Score=204.48 Aligned_cols=232 Identities=21% Similarity=0.297 Sum_probs=194.2
Q ss_pred CCCCCcccCCCc---ceeeeecccccCcEEEEEEcCC-CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC-
Q 016458 45 QGRAPVSFGPTD---LVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP- 119 (389)
Q Consensus 45 ~~~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~- 119 (389)
..+....|+... -+.+..|..|+..|++++|++. .++|++|+.||+|++||++......++....+.|..++|+|
T Consensus 108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPG 187 (839)
T ss_pred CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccC
Confidence 345566777665 5566689999999999999984 46899999999999999999999988988889999999999
Q ss_pred CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (389)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 199 (389)
.+..++++...|.+++||++.+. .....+..|.++|.|+.|+|++ .+|++||.|+.|+|||..++.......
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~------r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~~t- 259 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPD------RCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPKHT- 259 (839)
T ss_pred CCceEEEecCCceEEEeeccCch------hHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccceeE-
Confidence 67889999999999999999854 2566788999999999999975 899999999999999998754333221
Q ss_pred cccCCCCCCeeEEEeeCCCCcEEEEeeC--CCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEE
Q 016458 200 EFQSGHTADVLSVSISGSNSRMFVSGSC--DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRL 276 (389)
Q Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i 276 (389)
.....++.++.|-|.....|++++. |-.|++||++.+.-+...+..|...++.++|.. |...+.+++.||.|..
T Consensus 260 ---InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 260 ---INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ---EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 2455789999999988888888764 779999999998888999999999999999976 5567889999999877
Q ss_pred EECCCCceeeE
Q 016458 277 FDIRTGHQLQV 287 (389)
Q Consensus 277 ~d~~~~~~~~~ 287 (389)
-.+++......
T Consensus 337 h~~knat~pid 347 (839)
T KOG0269|consen 337 HLFKNATTPID 347 (839)
T ss_pred hhhhcccChhh
Confidence 76666544433
No 148
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-25 Score=179.44 Aligned_cols=291 Identities=23% Similarity=0.314 Sum_probs=212.6
Q ss_pred EEEEcCCCCeEEEEecCC---c--EEEEeCCCCCeeEEEeeCC----CcEEEEEECC-------CCcEEEEecCCCcEEE
Q 016458 72 SLDWTSERNRIVSASQDG---R--LIVWNALTSQKTHAIKLPC----AWVMTCAFSP-------TGQSVACGGLDSVCSI 135 (389)
Q Consensus 72 ~~~~~~~~~~l~~~~~dg---~--v~iw~~~~~~~~~~~~~~~----~~v~~~~~~~-------~~~~l~~~~~dg~i~v 135 (389)
.+..-|..+++++|-.+. . |+||+-... ..+..|. ....|++|.. .|+++|.|+.|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~---nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE---NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCc---ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 455667666777665432 2 455553321 1122222 3446777743 3689999999999999
Q ss_pred EeCCCCCCCCCC--------------CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc
Q 016458 136 FNLNSPTDKDGN--------------LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (389)
Q Consensus 136 w~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 201 (389)
||+.-....... ........+|+..|.++.|+..-.+.|++|+.|.+|++||+.++++...+
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~---- 282 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI---- 282 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh----
Confidence 998853211000 00112234789999999999888889999999999999999999999998
Q ss_pred cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECC
Q 016458 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 280 (389)
..|...|.++.|+|....+|++|+.|+++.+.|.|.....-..++ ..+.|-.++|.| ....++++..||+|+-+|+|
T Consensus 283 -~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 283 -THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred -hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 679999999999999999999999999999999997533333333 567899999999 45577888899999999999
Q ss_pred CC-ceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC-Ce
Q 016458 281 TG-HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-SA 357 (389)
Q Consensus 281 ~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 357 (389)
.. +++..+..+.. +|+++++++.-. ++++++.|+.|.+|++....+...... ...-+...|+++.|+- -.
T Consensus 361 ~~~~~vwt~~AHd~-----~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~--~~~~~rl~c~~~~~~~a~~ 433 (463)
T KOG0270|consen 361 NPGKPVWTLKAHDD-----EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH--SFKLGRLHCFALDPDVAFT 433 (463)
T ss_pred CCCCceeEEEeccC-----CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc--cccccceeecccCCCcceE
Confidence 86 66666665554 499999998654 788899999999999875443222110 1122346777888854 46
Q ss_pred EEeeeCCCeeEEeecceecccCccc
Q 016458 358 LCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 358 l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
++.||..+.++| ||+.++...
T Consensus 434 la~GG~k~~~~v----wd~~~~~~V 454 (463)
T KOG0270|consen 434 LAFGGEKAVLRV----WDIFTNSPV 454 (463)
T ss_pred EEecCccceEEE----eecccChhH
Confidence 778888888999 999887654
No 149
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.5e-26 Score=175.57 Aligned_cols=248 Identities=20% Similarity=0.265 Sum_probs=194.6
Q ss_pred EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (389)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 191 (389)
..|+.|++.|.+||+|+.||.|.|||+.+.. ..+.+.+|..+|++++|+++| +.|++++.|..|.+||+..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCC
Confidence 7899999999999999999999999999854 677889999999999999998 78999999999999999999
Q ss_pred eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---eccceEEEEEecCCCEEEEE
Q 016458 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNRFGTG 268 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~ 268 (389)
.+...+ ...++|..+.|+|.+.+.+++.-.+..-.+.++..+...+..... -+....+..|.+.|+++++|
T Consensus 98 s~l~ri------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 98 SPLKRI------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred CceeEE------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEe
Confidence 988887 577899999999988887777766666666666643111111110 01122344688999999999
Q ss_pred ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE---------EeecCcC
Q 016458 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV---------LNLGSLQ 339 (389)
Q Consensus 269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------~~~~~~~ 339 (389)
...|.+.++|..+.+++..+.... ...|..+.++..|++|+.-+.|..|+.|+++.-... ..+..
T Consensus 172 tsKGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD-- 245 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD-- 245 (405)
T ss_pred cCcceEEEEecchheeeeeeeech----heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH--
Confidence 999999999999998888776644 124899999999999999999999999997631111 11100
Q ss_pred CCCCCCeeEEEECCCCCeEEeeeCC-CeeEEeecceecccCcccC
Q 016458 340 NSHEGRITCLGLSADGSALCTGSWD-TNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~~~~W~~~~~~~~~ 383 (389)
......-.+++|+.+|.|+++++.. ..++| |.-..|.++.
T Consensus 246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYI----WE~~~GsLVK 286 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYI----WEKSIGSLVK 286 (405)
T ss_pred HHhhhhhhheeecCCccEEEeccccceeEEE----EecCCcceee
Confidence 0112244678999999999888753 56888 9999998875
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=177.20 Aligned_cols=253 Identities=21% Similarity=0.297 Sum_probs=189.3
Q ss_pred eCCCcEEEEEECCCC--cEEEEecCCCcEEEEeCCCCC---------CCCCCCcceeeecccccceEEEEEeeCCCcEEE
Q 016458 107 LPCAWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPT---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175 (389)
Q Consensus 107 ~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 175 (389)
.|.+.++.+.-++-+ .+.++-+..|.|+||++.... ..........++.+|.+.=..++|+|-....++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 345567777666644 455666789999999987532 122344567788899999999999996555689
Q ss_pred EeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceE
Q 016458 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVN 254 (389)
Q Consensus 176 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~ 254 (389)
+|..-+.|++|...++.-..-- ....+|...|..++|+|....+|++|+.||+|+|||+|... +.....++|.+.|+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~--~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQ--RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cCccccceEeeeeccCceeecC--ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 9999999999999886543221 11256999999999999999999999999999999999873 34445588999999
Q ss_pred EEEEecCCCEEEEEecCCeEEEEECCCC---ceeeEeeccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccce
Q 016458 255 TVKFFPDGNRFGTGSDDGTCRLFDIRTG---HQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAK 330 (389)
Q Consensus 255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~ 330 (389)
.|.|+....+|++|+.||+++|||++.. +++..+..+.. +|+++.|+|.. ..|++++.|.+|.+||+....
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-----pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-----PITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC-----CeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999998889999999999999999874 45555655444 59999999954 578888999999999985321
Q ss_pred E--------EEe---ec-CcCCCC--CCCeeEEEECCC-CCeEEeeeCCCe
Q 016458 331 V--------VLN---LG-SLQNSH--EGRITCLGLSAD-GSALCTGSWDTN 366 (389)
Q Consensus 331 ~--------~~~---~~-~~~~~~--~~~v~~~~~~~~-~~~l~~~~~dg~ 366 (389)
- ... +. .+...| ...+..+.|++. ..+|++.+.||.
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 1 000 00 000123 346888999983 447888888874
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.95 E-value=2e-25 Score=177.52 Aligned_cols=294 Identities=21% Similarity=0.297 Sum_probs=215.8
Q ss_pred cCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCC---------eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 67 AGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQ---------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 67 ~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
..+|..+.|.++.. .||||+.|..|++|.+..+. ....+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45899999999766 99999999999999775432 234556788999999999999999999999999999
Q ss_pred eCCCCC---------CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 137 NLNSPT---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 137 ~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
....-. .....+.....+.+|...|..++|+|++ .++++++.|..+++||+..+.....+ ..|..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~-----~dh~~ 166 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAIL-----DDHEH 166 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeec-----ccccc
Confidence 877211 0122355667788999999999999997 79999999999999999999999998 79999
Q ss_pred CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-------------------eecc----ceEEEEEecCCCE
Q 016458 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------------------GHEG----DVNTVKFFPDGNR 264 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~----~i~~~~~~~~~~~ 264 (389)
.+..++|.| .++++++-+.|...+.+++... +.+.... -|.. -...++|+|+|.+
T Consensus 167 yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~-~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 167 YVQGVAWDP-LNQYVASKSSDRHPEGFSAKLK-QVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ccceeecch-hhhhhhhhccCcccceeeeeee-eeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 999999999 7888888888887777766533 1111100 0211 2456899999999
Q ss_pred EEEEec----CC-----eEEEEECCCCce-eeEeeccCCCCCCCCeeEEEeCC------------------CCCEEEEEe
Q 016458 265 FGTGSD----DG-----TCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSI------------------SGRLLFAGY 316 (389)
Q Consensus 265 l~~~~~----dg-----~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l~~~~ 316 (389)
+++... .+ ..++|+-...+. ...+... ..+...+.|+| -+-.+++++
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~-----~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt 319 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP-----KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT 319 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCC-----CcceEEEEeeeeEEEeccccccccccccccceEEEEee
Confidence 987642 22 234454332211 1111111 11233333332 223455555
Q ss_pred cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458 317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
. +.|+|||.++..++.... .-|-..|+.++|++||..|+..+.||...+ -.++..++
T Consensus 320 ~-~svyvydtq~~~P~~~v~---nihy~~iTDiaws~dg~~l~vSS~DGyCS~----vtfe~~el 376 (434)
T KOG1009|consen 320 K-NSVYVYDTQTLEPLAVVD---NIHYSAITDIAWSDDGSVLLVSSTDGFCSL----VTFEPWEL 376 (434)
T ss_pred c-ceEEEeccccccceEEEe---eeeeeeecceeecCCCcEEEEeccCCceEE----EEEcchhc
Confidence 4 489999999988888776 678899999999999999999999998876 55554443
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2e-25 Score=172.28 Aligned_cols=270 Identities=18% Similarity=0.270 Sum_probs=194.1
Q ss_pred EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (389)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (389)
..+++|...|++++|+.||++|++++.|+.|++|+++.-..+.......... -+..+.+.|.||-...+++.-...+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve---~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE---YDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc---CCCceEEEECCCcceEEEEEccCCE
Confidence 3567899999999999999999999999999999998743221111111111 2245778999998777888888889
Q ss_pred EEEEeCCCCee---EEEe----cCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEE
Q 016458 183 CVLWDITTGLR---TSVF----GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255 (389)
Q Consensus 183 i~iwd~~~~~~---~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~ 255 (389)
+++|.+...+. ...+ ..++...|...+..+-... +..+|++++.|..|.+|+++ ++.+..+......-+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK--GQLLQSIDTNQSSNYD 233 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC--Cceeeeeccccccccc
Confidence 99997654321 1111 1123356677777777775 88999999999999999999 4788888877777888
Q ss_pred EEEecCCCEEEEEecCCeEEEEECCC---CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc----
Q 016458 256 VKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL---- 328 (389)
Q Consensus 256 ~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---- 328 (389)
.+.||+|+++++++..-.|++|.+-- |.............|...|..++|+++...+++.+.||.++|||++-
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 99999999999999999999998632 22222222222245566799999999999999999999999999752
Q ss_pred ce---EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 329 AK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 329 ~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
++ .+.+.......-.+....++.+|+|+.|+.+. ...+++ +..++|+..+
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~----~~se~g~~~~ 366 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKV----FASEDGKDYP 366 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEE----EEcccCccch
Confidence 22 22222111122333445899999999887655 456888 8877776543
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.7e-27 Score=208.29 Aligned_cols=291 Identities=16% Similarity=0.279 Sum_probs=223.5
Q ss_pred EEEEcCCCC-eEEEEe----------cCCcEEEEeCC--CCC----eeEEEeeCCCcEEEEEECCCCcE----EEEecCC
Q 016458 72 SLDWTSERN-RIVSAS----------QDGRLIVWNAL--TSQ----KTHAIKLPCAWVMTCAFSPTGQS----VACGGLD 130 (389)
Q Consensus 72 ~~~~~~~~~-~l~~~~----------~dg~v~iw~~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~d 130 (389)
.++|+|++. ++++|. .+.++-||.+. +.. .+..+. .....+.++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 578888876 555542 34566666543 222 222222 2356889999997766 8889999
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 210 (389)
|.|.+||...- ..............|.+.|..+.|++..++++++|+.||.|.|||+.+.+...... .....+.|.
T Consensus 90 G~I~ly~p~~~-~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~ 165 (1049)
T KOG0307|consen 90 GNIVLYDPASI-IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIK 165 (1049)
T ss_pred CceEEecchhh-ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccce
Confidence 99999998863 12344556778889999999999999988899999999999999998865544442 134567899
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc--ceEEEEEecCC-CEEEEEecCC---eEEEEECCCCce
Q 016458 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDG-NRFGTGSDDG---TCRLFDIRTGHQ 284 (389)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~ 284 (389)
+++|+....+.|++++.+|.+.|||+|.. +++..+..+.+ .+..++|+|+. ..|++++.|. .|.+||+|....
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 99999888899999999999999999987 66666655544 47789999965 3566666543 599999987554
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC-CeEEeee
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-SALCTGS 362 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~ 362 (389)
....... |...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+ ......+..+.|+|.. ..++.++
T Consensus 245 P~k~~~~----H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~----p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 245 PLKILEG----HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL----PAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred chhhhcc----cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec----CCCCcceeeeeecCCCcchhhhhe
Confidence 4333322 23359999999976 79999999999999999999999999 5677889999999954 4888899
Q ss_pred CCCeeEEeecceecccCc
Q 016458 363 WDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 363 ~dg~i~i~~~~W~~~~~~ 380 (389)
-||.|.| +.+..+.
T Consensus 317 fdgkI~I----~sl~~~~ 330 (1049)
T KOG0307|consen 317 FDGKISI----YSLQGTD 330 (1049)
T ss_pred eccceee----eeeecCC
Confidence 9999999 8888664
No 154
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.95 E-value=4.5e-26 Score=171.26 Aligned_cols=294 Identities=14% Similarity=0.211 Sum_probs=212.6
Q ss_pred eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
.+...|++|.+.|+++.|..++ +|.+|..-|.|.+|++.+.+....+. .+...|+.+.--|+ ..+.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 4456777999999999998876 59999999999999999999888888 56678889988887 567888899999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC-e-----------EEEEeCCCCeeEEEecCcccCC
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-T-----------CVLWDITTGLRTSVFGGEFQSG 204 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~-----------i~iwd~~~~~~~~~~~~~~~~~ 204 (389)
++... .....|.-.++++.|.+.. +...+... . +.+-|......+... ......
T Consensus 83 ~ia~s----------~~i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~-dd~~~~ 148 (323)
T KOG0322|consen 83 TIAYS----------AFISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIA-DDSERS 148 (323)
T ss_pred EccCc----------ceEEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEcc-Cchhcc
Confidence 99852 2333455556666665532 22222111 1 222222222222221 111234
Q ss_pred CCCCeeEEEeeCC--CCcEEEEeeCCCceEEEeCCCCCc---------ceeEEeeeccceEEEEEecCCCEEEEEecCCe
Q 016458 205 HTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASR---------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273 (389)
Q Consensus 205 ~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 273 (389)
..+.+++..+.-. ..-++++|.++|.+.+||+..+.. .......|..+|.++.|.+....=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 4556777664332 234677888999999999987522 22234468899999999987667788888889
Q ss_pred EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
+..|++........+.... ......+..+.+-||++.+|+++.|++|+||+.++..++..+ ..|.+.|.+++|+|
T Consensus 229 l~~~Sl~~s~gslq~~~e~-~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL----kyHsagvn~vAfsp 303 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEI-TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL----KYHSAGVNAVAFSP 303 (323)
T ss_pred ceeeeeccccCcccccceE-EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh----hhhhcceeEEEeCC
Confidence 9999987542111111111 011124888999999999999999999999999999999999 78999999999999
Q ss_pred CCCeEEeeeCCCeeEEeecceec
Q 016458 354 DGSALCTGSWDTNLKVNLGFWRV 376 (389)
Q Consensus 354 ~~~~l~~~~~dg~i~i~~~~W~~ 376 (389)
+...+|+++.|+.|.+ |++
T Consensus 304 d~~lmAaaskD~rISL----WkL 322 (323)
T KOG0322|consen 304 DCELMAAASKDARISL----WKL 322 (323)
T ss_pred CCchhhhccCCceEEe----eec
Confidence 9999999999999999 986
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-25 Score=173.79 Aligned_cols=286 Identities=15% Similarity=0.235 Sum_probs=207.3
Q ss_pred CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC--CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (389)
..+|++..+|.|++||..+++.+..++++...++.+.|.. ....+.+++.||.|++||++..... .......+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-----a~~~~~~~ 115 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-----ARISWTQQ 115 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-----hheeccCC
Confidence 5789999999999999999999999999999999999976 5678999999999999999985421 22333444
Q ss_pred c-cceEEEEEeeCCCcEEEEee----CCCeEEEEeCCCCee-EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCce
Q 016458 158 K-GYVSCCQYVPDEDTHLITSS----GDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 231 (389)
Q Consensus 158 ~-~~v~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 231 (389)
. .+..+++....+ +++++|+ .+-.|.+||++..+. +..+. ..|.+.|+++.|+|.+.++|++|+.||.|
T Consensus 116 ~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~----eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 116 SGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLN----ESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred CCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhh----hhccCcceeEEecCCCCCeEEeecccceE
Confidence 4 456666665444 6677765 367899999998766 44443 68999999999999999999999999999
Q ss_pred EEEeCCCCCc--ceeEEeeeccceEEEEEecCC-CEEEEEecCCeEEEEECCCCceeeEeeccCCC-------CCCCCee
Q 016458 232 RLWDTRVASR--AVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIPHVT 301 (389)
Q Consensus 232 ~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~i~ 301 (389)
.+||++...+ .+...-.|...|.++.|..++ +.|.+-+......+|+++.+.....+...... .....+.
T Consensus 191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 9999986522 233334477889999999866 45888888999999999988755544333111 0001122
Q ss_pred EEEeCCCCCEEEEEec-CCcEEEEEc---ccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 302 SIAFSISGRLLFAGYS-NGDCYVWDT---LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 302 ~~~~~~~~~~l~~~~~-dg~i~i~d~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
......++...+.++. -|...++-+ .++........+..+|...|.++.|...+.++.|||.||.+.+ |..+
T Consensus 271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~----Wk~~ 346 (376)
T KOG1188|consen 271 NEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQA----WKVE 346 (376)
T ss_pred ecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEE----EecC
Confidence 2211223344444433 555555543 3333333333333568888999999999999999999999999 9965
Q ss_pred cC
Q 016458 378 EG 379 (389)
Q Consensus 378 ~~ 379 (389)
..
T Consensus 347 da 348 (376)
T KOG1188|consen 347 DA 348 (376)
T ss_pred Cc
Confidence 43
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.6e-26 Score=204.05 Aligned_cols=251 Identities=16% Similarity=0.259 Sum_probs=206.9
Q ss_pred cCcEEEEEEcCCCCe----EEEEecCCcEEEEeCCCC------CeeEEEeeCCCcEEEEEECCCC-cEEEEecCCCcEEE
Q 016458 67 AGKVYSLDWTSERNR----IVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSI 135 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~----l~~~~~dg~v~iw~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~v 135 (389)
..+-+.++|.+.+.. ||.|..||.|.+||...- ..+.+...|.+.|..+.|++.. +.||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 346789999997765 889999999999997652 2355667899999999999955 59999999999999
Q ss_pred EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
||+....... ...-....+.|.+++|+..-.+.|++++.+|.+.|||++..+.+..+.. ......+..++|+
T Consensus 144 WDlnn~~tP~-----~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~---~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 144 WDLNKPETPF-----TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD---TPGRMHCSVLAWH 215 (1049)
T ss_pred eccCCcCCCC-----CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc---CCCccceeeeeeC
Confidence 9999844221 1112335678999999998878899999999999999999877776632 1222457899999
Q ss_pred CCCCcEEEEeeCCC---ceEEEeCCCCCcceeEEeeeccceEEEEEecCC-CEEEEEecCCeEEEEECCCCceeeEeecc
Q 016458 216 GSNSRMFVSGSCDS---TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (389)
Q Consensus 216 ~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 291 (389)
|++...+++++.|. .|.+||+|....+++.+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+...
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ 295 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC
Confidence 98888888887764 699999999888999999999999999999955 89999999999999999999988887552
Q ss_pred CCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccce
Q 016458 292 HGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK 330 (389)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 330 (389)
..++..+.|+|... .+++++-||.|.||.+....
T Consensus 296 -----~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 -----GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -----CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 33699999999877 88889999999999987654
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.94 E-value=6.7e-25 Score=185.49 Aligned_cols=274 Identities=12% Similarity=0.207 Sum_probs=217.4
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (389)
.|..++|-|||..|+.+..+ .+.+||...|..+.++++|...|.|++|+.+|+.+++|+.|..|.+|+..-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE------- 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE------- 85 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-------
Confidence 79999999999988887655 7999999999999999999999999999999999999999999999987641
Q ss_pred cceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (389)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (389)
-.....|.+.|.|+.|+|-. +.+++++-+ ..-+|......... ......+.+++|.. ++.+++.|-.+
T Consensus 86 --G~LkYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K-------~kss~R~~~CsWtn-DGqylalG~~n 153 (1081)
T KOG1538|consen 86 --GILKYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSK-------HKSSSRIICCSWTN-DGQYLALGMFN 153 (1081)
T ss_pred --ceeeeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHh-------hhhheeEEEeeecC-CCcEEEEeccC
Confidence 22335799999999999986 667776653 35678766544332 23456788999997 99999999999
Q ss_pred CceEEEeCCCCCcceeEE--eeeccceEEEEEecC-----CCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCee
Q 016458 229 STARLWDTRVASRAVRTF--HGHEGDVNTVKFFPD-----GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (389)
Q Consensus 229 g~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~ 301 (389)
|+|.+-+-... +....- -+.+++|.+++|+|. ...+++.....++.+|.+.. +.+..-..... ...
T Consensus 154 GTIsiRNk~gE-ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~F-----dP~ 226 (1081)
T KOG1538|consen 154 GTISIRNKNGE-EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNF-----DPC 226 (1081)
T ss_pred ceEEeecCCCC-cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCC-----Cch
Confidence 99999865433 222222 246779999999994 35788888888888888763 33332111111 257
Q ss_pred EEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
++.+.++|.|++.|+.|+.+.+|- +.|-.+.++ ...+..|..++..|++++++.|+.||+|.. +++-.
T Consensus 227 CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTv----g~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC----yNl~f 294 (1081)
T KOG1538|consen 227 CISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTV----GEQDSWIWTVQAKPNSQYVVVGCQDGTIAC----YNLIF 294 (1081)
T ss_pred hheeccCCcEEEEccCCCceEEEe-ecCeEEeec----cccceeEEEEEEccCCceEEEEEccCeeeh----hhhHH
Confidence 888999999999999999999996 467777777 457789999999999999999999999998 77654
No 158
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.5e-25 Score=180.71 Aligned_cols=229 Identities=26% Similarity=0.380 Sum_probs=173.9
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECC--CCcEEEEecCCCcE
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSP--TGQSVACGGLDSVC 133 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i 133 (389)
+.....|.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..++++.+. +|...|.++.|-| +.+.+++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 34556899999999999999999999999999999999999888888775 7889999999998 66788999999999
Q ss_pred EEEeCCCCCC---CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec---Ccc--cCCC
Q 016458 134 SIFNLNSPTD---KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG---GEF--QSGH 205 (389)
Q Consensus 134 ~vw~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~--~~~~ 205 (389)
+++|+...+. ..+.......+..|...|..++..|.+++.+.+++.||+|+-+|++....-..-. ... -...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999986332 2223334556678999999999999999999999999999999998742211100 000 0112
Q ss_pred CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc-----------------ceeEEe-eec-----------cceEEE
Q 016458 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------------AVRTFH-GHE-----------GDVNTV 256 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~~~~~-~~~-----------~~i~~~ 256 (389)
--...++.++|.+..+|++|+.|...++||.+...+ ++..+. +|- ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 235678999999999999999999999999542211 122221 121 114668
Q ss_pred EEecCCCEEEEEecCCeEEEEECCCCcee
Q 016458 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (389)
Q Consensus 257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 285 (389)
+|+|+|.-|++.-..-.|+++|+..++..
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 89999988777766668999998765543
No 159
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.5e-24 Score=189.74 Aligned_cols=306 Identities=15% Similarity=0.231 Sum_probs=225.8
Q ss_pred cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC---CcEEEEEECC--CCcEEEEecCCCcEEEEe
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---AWVMTCAFSP--TGQSVACGGLDSVCSIFN 137 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---~~v~~~~~~~--~~~~l~~~~~dg~i~vw~ 137 (389)
..+...+-..+.|+|-...++++...-.|++||.+.++....+..+. ..|+.+.+-. |..++++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 33444467788899988899999877799999999999887776543 5688888854 567899999999999998
Q ss_pred CCCCCCCCCCCcceeeec-------ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458 138 LNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 210 (389)
-..... ....+..... +..+.-.-+.|.... .+|+++|.-..|+|||.........++ .+....++
T Consensus 1140 ~y~~~~--~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP----~~s~t~vT 1212 (1387)
T KOG1517|consen 1140 DYADKW--KKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIP----YGSSTLVT 1212 (1387)
T ss_pred cccccc--CCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecc----cCCCccce
Confidence 654321 1111221111 112222445677665 456666668999999999988887775 45667788
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEeCCCCCc--ceeEEeeeccc--eEEEEEecCCCE-EEEEecCCeEEEEECCCCcee
Q 016458 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGD--VNTVKFFPDGNR-FGTGSDDGTCRLFDIRTGHQL 285 (389)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~ 285 (389)
++.-+...++++++|..||.|++||.|.... .+...+.|+.. |..+.+.+.|-- |++|+.||.|++||++.....
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e 1292 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE 1292 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc
Confidence 8888776789999999999999999997644 67778888887 999999986654 999999999999999985222
Q ss_pred eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeec---CcCCCCCCCeeEEEECCCCCeEEeee
Q 016458 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG---SLQNSHEGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~ 362 (389)
..+.....-...+..+++..++....+|+|+. +.|.||++.. +.+..++ .+.....+.+.|++|+|..-+||+|+
T Consensus 1293 ~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1293 TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence 22222111111224899999999999999988 8999999853 3333332 12233456789999999999999999
Q ss_pred CCCeeEEeecceecccCcc
Q 016458 363 WDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 363 ~dg~i~i~~~~W~~~~~~~ 381 (389)
.|..|.| |..+.+.+
T Consensus 1371 ~Ds~V~i----Ys~~k~~~ 1385 (1387)
T KOG1517|consen 1371 ADSTVSI----YSCEKPRL 1385 (1387)
T ss_pred CCceEEE----eecCCcCC
Confidence 9999999 88776543
No 160
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.8e-25 Score=177.32 Aligned_cols=243 Identities=19% Similarity=0.292 Sum_probs=200.6
Q ss_pred CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeC
Q 016458 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (389)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 188 (389)
.+.|+++.|+|....+++++.||.+++|.++.... +..+.+.-...+|.+..|.|+|...+++++....++.||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-----~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-----PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-----hhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 36799999999999999999999999999987542 2455666667899999999999768999999999999999
Q ss_pred CCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEE
Q 016458 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268 (389)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 268 (389)
.+.+....-+.. ......+....+++ ++++|+..+..|.|.+....+. +.+..+. .++.|..++|+.+++.|+++
T Consensus 288 e~ak~~k~~~~~--g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 288 ETAKVTKLKPPY--GVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSSDSKELLAS 362 (514)
T ss_pred cccccccccCCC--CcccchhheeEecC-CCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEecCCcEEEEE
Confidence 988765544321 11234577888898 8889999999999999998877 6777766 57789999999999999999
Q ss_pred ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc------ceEEEeecCcCCCC
Q 016458 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL------AKVVLNLGSLQNSH 342 (389)
Q Consensus 269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~ 342 (389)
+.+|.|.+||++...++..+...... .-+++|.++++.|||+|+..|.|.|||.++ .+++..+ ..-
T Consensus 363 ~~~GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~----dNL 434 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV----DNL 434 (514)
T ss_pred cCCceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh----hhh
Confidence 99999999999999888887664432 357888999999999999999999999653 4555555 456
Q ss_pred CCCeeEEEECCCCCeEEeeeC--CCeeEE
Q 016458 343 EGRITCLGLSADGSALCTGSW--DTNLKV 369 (389)
Q Consensus 343 ~~~v~~~~~~~~~~~l~~~~~--dg~i~i 369 (389)
...|++|+|++|+++||.++. +..+++
T Consensus 435 tt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 435 TTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred heeeeeeeeCcchhhhhhhhhccccceEE
Confidence 678999999999999988875 556666
No 161
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=6e-25 Score=184.46 Aligned_cols=256 Identities=21% Similarity=0.328 Sum_probs=188.3
Q ss_pred EEEEECC---CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 113 MTCAFSP---TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 113 ~~~~~~~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
.+..|++ ....|+.+.+||.|.++|........ +.........|.+.|.++.|.| ++..|++++.|.++++||+.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~-ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL-EERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcch-hhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeec
Confidence 3355654 34678999999999999988744220 1112345568999999999999 67899999999999999999
Q ss_pred CCeeEEE--ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC--------------------------c
Q 016458 190 TGLRTSV--FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--------------------------R 241 (389)
Q Consensus 190 ~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------------------~ 241 (389)
+...... + .+|...|.+++|.|.+...|++|+.||.|.|||++-.. +
T Consensus 131 ~s~l~G~~~~-----~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 131 TSRLVGGRLN-----LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred cceeecceee-----cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 9887766 4 79999999999999999999999999999999987432 0
Q ss_pred ceeEEeeeccceEE---EEEecCCCEEEEEec-CCeEEEEECCCCceeeEeecc------CCCCCCCCeeEEEeCCCCCE
Q 016458 242 AVRTFHGHEGDVNT---VKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQ------HGENEIPHVTSIAFSISGRL 311 (389)
Q Consensus 242 ~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~ 311 (389)
......++...|.+ +.+..|...|++++. |+.|++||++........... ........++++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 11122334444544 555568889999887 999999999976543332111 11122335788888888999
Q ss_pred EEEEecCCcEEEEEcccceE--EEeecCcCCCCCC--CeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 312 LFAGYSNGDCYVWDTLLAKV--VLNLGSLQNSHEG--RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 312 l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
|++.+.|+.|++|++.+... ...+ .++.. .-..-..+||+.+|++|+.|+..++ |.+.+.+..+
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~----sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayi----w~vs~~e~~~ 353 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEF----SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYI----WVVSSPEAPP 353 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhc----cCcccceeeeeeecCCCCceEeccCCCcceee----eeecCccCCh
Confidence 99999999999999976432 2222 12211 1122346899999999999999999 9999876654
No 162
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.5e-24 Score=170.97 Aligned_cols=299 Identities=15% Similarity=0.213 Sum_probs=228.1
Q ss_pred eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC------CCCeeEEEee-CCCcEEEEEECCCCcEEEEecCC
Q 016458 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL------TSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLD 130 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~------~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 130 (389)
-+.+-+.+|.+.|+++.|+.++++|++|+.|..+++|++. +.+++..... |...|.|++|...+..+++|+.+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 3455688999999999999999999999999999999974 3455555444 44889999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeeccc---ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCCC
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGH---KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHT 206 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~ 206 (389)
++|..-|+++.+ ......| .+.|..+..+|. ++.|++.+.++.|.+||++... ....+. .....
T Consensus 127 ~~VI~HDiEt~q--------si~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~---~AN~~ 194 (609)
T KOG4227|consen 127 GTVIKHDIETKQ--------SIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVL---PANSG 194 (609)
T ss_pred ceeEeeecccce--------eeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceee---ecCCC
Confidence 999999998844 1222233 458999999998 4899999999999999998765 222221 13455
Q ss_pred CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee------ccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (389)
....++.|+|....+|++.+..+-+.+||.+....++....+. ...-.++.|+|+|..|++.-....-.+||+-
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 6788999999999999999999999999999876555443322 1223578899999999988777777889988
Q ss_pred CCceeeEeeccC--CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc-----------------------eEEEee
Q 016458 281 TGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----------------------KVVLNL 335 (389)
Q Consensus 281 ~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------------~~~~~~ 335 (389)
+.++......+. +--....+.+++|-.|. -+++|+.+-.|++|.+... +.+..+
T Consensus 275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL 353 (609)
T KOG4227|consen 275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL 353 (609)
T ss_pred cccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence 755443322211 11122346778887554 4899999999999987421 112223
Q ss_pred cCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 336 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
.+|.+.+..+.|+|...+|++.+..+.++| |.-.
T Consensus 354 ----rGHRSv~NQVRF~~H~~~l~SSGVE~~~Kl----WS~~ 387 (609)
T KOG4227|consen 354 ----RGHRSVPNQVRFSQHNNLLVSSGVENSFKL----WSDH 387 (609)
T ss_pred ----ecccccccceeecCCcceEeccchhhheec----cccc
Confidence 789999999999999999999999999999 8743
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=2e-24 Score=176.41 Aligned_cols=265 Identities=17% Similarity=0.213 Sum_probs=201.6
Q ss_pred CcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCCcE-EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEE
Q 016458 89 GRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQS-VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (389)
Q Consensus 89 g~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 165 (389)
..+++||+...+....+..+. ..+.++.|+....+ +++.+.|..+++|.-.... ...+......+. .-.|+.
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~---~~Vp~~~k~~gd--~~~Cv~ 86 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT---PEVPRVRKLTGD--NAFCVA 86 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCC---Cccceeeccccc--hHHHHh
Confidence 369999997766554444332 34889999876642 3344568889999876532 334444444443 233444
Q ss_pred EeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE
Q 016458 166 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT 245 (389)
Q Consensus 166 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 245 (389)
..... .++++|+..+.|+|||++...+...+ ..|.+.|+++.++. ...+|++++..|.|.|..+.+. .....
T Consensus 87 ~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~l-----kdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~-~~tt~ 158 (673)
T KOG4378|consen 87 CASQS-LYEISGGQSGCVKIWDLRAKLIHRFL-----KDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTK-QKTTT 158 (673)
T ss_pred hhhcc-eeeeccCcCceeeehhhHHHHHhhhc-----cCCcceeEEEEecC-CcceeEEeccCCcEEEEecccC-ccccc
Confidence 44443 68999999999999999977666666 78999999999998 7889999999999999999887 44444
Q ss_pred Eeee-ccceEEEEEecCCC-EEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEE
Q 016458 246 FHGH-EGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCY 322 (389)
Q Consensus 246 ~~~~-~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~ 322 (389)
+... ...|+-+.|+|..+ +|.+++.+|.|.+||+....+...+...+ ..+...++|+|... +|++.+.|..|.
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H----sAP~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH----SAPCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc----cCCcCcceecCCccceEEEecccceEE
Confidence 4433 34567899999665 56788899999999999877776665443 44789999999765 777889999999
Q ss_pred EEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 323 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 323 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
+||....+....+ .-..+.+.++|+++|.+|+.|...|.|.. ||+..-
T Consensus 235 ~yD~~s~~s~~~l-----~y~~Plstvaf~~~G~~L~aG~s~G~~i~----YD~R~~ 282 (673)
T KOG4378|consen 235 IYDIRSQASTDRL-----TYSHPLSTVAFSECGTYLCAGNSKGELIA----YDMRST 282 (673)
T ss_pred Eeeccccccccee-----eecCCcceeeecCCceEEEeecCCceEEE----EecccC
Confidence 9999877776666 34568999999999999999999999999 999864
No 164
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.93 E-value=1.8e-22 Score=175.37 Aligned_cols=277 Identities=19% Similarity=0.232 Sum_probs=203.0
Q ss_pred CcEEEEeCCCCCeeEEEeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe
Q 016458 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167 (389)
Q Consensus 89 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (389)
+.+.+|++.........-.....|++++|+| +..+++.|+.+|.|.+||+..+.... ..........|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEe
Confidence 4799999988744444444557799999999 66788888999999999999865321 223344456789999999998
Q ss_pred eCCC-cEEEEeeCCCeEEEEeCCCCeeEE-EecCc------ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeC---
Q 016458 168 PDED-THLITSSGDQTCVLWDITTGLRTS-VFGGE------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT--- 236 (389)
Q Consensus 168 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~--- 236 (389)
.+.. .-|++++.||.|..|+++.-.... ..... ........+++++|.+.+.+.|++|+.+|.|.--+.
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 7531 348999999999999877543311 11111 011334568999999999999999999999887332
Q ss_pred CCCC----cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC-CCceeeEeeccCCCCCCCCeeEEEeCCCCC-
Q 016458 237 RVAS----RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGR- 310 (389)
Q Consensus 237 ~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 310 (389)
+... +....+..|.++|+++.++|-+..++..+.|.++++|... ...++..+..... .+++++|||...
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-----~v~~vaWSptrpa 455 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-----YVTDVAWSPTRPA 455 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc-----eeeeeEEcCcCce
Confidence 2221 2244566788999999999966655555559999999987 5555554443332 399999999876
Q ss_pred EEEEEecCCcEEEEEcccc--eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 311 LLFAGYSNGDCYVWDTLLA--KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 311 ~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
.++++..||.+.+||+... .+..+. ..+....+.+.|+++|+.|++|...|.+.+ |++.+.
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~----~~~~~~l~~~~~s~~g~~lavGd~~G~~~~----~~l~~~ 518 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQ----KVCSPALTRVRWSPNGKLLAVGDANGTTHI----LKLSES 518 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccc----cccccccceeecCCCCcEEEEecCCCcEEE----EEcCch
Confidence 6777888999999999754 334443 334667788899999999999999999999 999754
No 165
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=2.3e-24 Score=181.22 Aligned_cols=126 Identities=19% Similarity=0.287 Sum_probs=103.8
Q ss_pred eeeeecccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCee------EEEeeCCCcEEEEEECCCCcEEEEecCC
Q 016458 58 VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKT------HAIKLPCAWVMTCAFSPTGQSVACGGLD 130 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d 130 (389)
+.+..|.+|.+.|+.+.|+| +..+||||+.|..|+||.+..+-.. ..+....-.|-++.|+|...-|+..+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 34556889999999999999 4458999999999999998744221 1222334568899999987777777788
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 191 (389)
|.++|||+.+.+ ....+.+|...|.+..|+.|| .++++++.|..|+|||.+..
T Consensus 150 g~v~i~D~stqk-------~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPRa~ 202 (1012)
T KOG1445|consen 150 GSVYITDISTQK-------TAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPRAS 202 (1012)
T ss_pred ceEEEEEcccCc-------eeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCccC
Confidence 999999999866 567788999999999999998 79999999999999998753
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=6.2e-24 Score=161.93 Aligned_cols=263 Identities=16% Similarity=0.252 Sum_probs=194.1
Q ss_pred eeeecccccCcEEEEEEcCCC-CeEEEEecC-------CcEEEEeCCCC---------CeeEEEe-eCCCcEEEEEECCC
Q 016458 59 CCRTLQGHAGKVYSLDWTSER-NRIVSASQD-------GRLIVWNALTS---------QKTHAIK-LPCAWVMTCAFSPT 120 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~d-------g~v~iw~~~~~---------~~~~~~~-~~~~~v~~~~~~~~ 120 (389)
....|..|.+.|..++-+|-. +.|+|+..+ ..+.||.+... +.+..+. .+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 445678899999999999954 466665442 24789987543 2233333 34468999999999
Q ss_pred CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (389)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 200 (389)
+..+++-. |..|.+|++.............. ...+....++-+|+|..+..-+....|+++..||+++......+.
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~-s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~-- 210 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSE-SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE-- 210 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccc-cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh--
Confidence 99998876 78899999998653222222211 123566788889999433345556778999999999987777664
Q ss_pred ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEEC
Q 016458 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI 279 (389)
Q Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 279 (389)
..|...|..+.|+|+...+|++++.||.|++||.|....++..+.+|...|.++.|+| ..++|++|+.|..|.+|..
T Consensus 211 --dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 211 --DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred --hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 6788899999999988899999999999999999999899999999999999999999 5678899999999999975
Q ss_pred CCCceeeEee------------------------ccCCCCCCCCeeEEEeCCCCCE-EEEEecCCcEEEEEcc
Q 016458 280 RTGHQLQVYY------------------------QQHGENEIPHVTSIAFSISGRL-LFAGYSNGDCYVWDTL 327 (389)
Q Consensus 280 ~~~~~~~~~~------------------------~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~ 327 (389)
..-.....+. ...-..+...|.+++||.-..+ +|+-+.||++.|=.+.
T Consensus 289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 4321000000 0011234456999999987775 4556889998876654
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.1e-24 Score=177.83 Aligned_cols=266 Identities=24% Similarity=0.327 Sum_probs=202.5
Q ss_pred eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC--------CCeeEEEeeCCCcEEEEEECCCCcEEEEecCC
Q 016458 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT--------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD 130 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 130 (389)
...++..|.+.|.+++|.|....|++++.||++.+|+++. -+++.++.+|.++|.|+++.+++..+++|+-|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 3348889999999999999999999999999999999932 25678899999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCC---CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 131 SVCSIFNLNSPTDKDG---NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
|+|+.|++........ .......+.+|.+.|+.+++++.. ..|++++.||+++.|+...... ..+.. ....+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~---~~e~g 440 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGE---PKEHG 440 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCC---ccccC
Confidence 9999998774332222 224567788999999999999986 5799999999999999877666 33322 12233
Q ss_pred CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee-------eccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (389)
...++.+-.......++...-+.-.++++... ..+..+.. ....+..+.++|...+.+++..|+.|+++|..
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44555554423233333333333334443333 22222211 12346778899999999999999999999999
Q ss_pred CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
++..+.....+.. .++++++.|+|.+|++++.||.+++|.+.........
T Consensus 520 ~~~~l~s~~a~~~-----svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 520 TGKILHSMVAHKD-----SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred ccccchheeeccc-----eecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 9998887766554 4999999999999999999999999998777666655
No 168
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.92 E-value=3.1e-22 Score=180.08 Aligned_cols=317 Identities=18% Similarity=0.234 Sum_probs=220.4
Q ss_pred CCCcccCCCcceeeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCC-------CeeEEEeeCCCcEEEEEEC
Q 016458 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTS-------QKTHAIKLPCAWVMTCAFS 118 (389)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~ 118 (389)
..+..|.|.. ..+..|..|+..|..++.+++. .++++||.||+|++||...- +...++......+.++...
T Consensus 1029 ~p~~gW~p~G-~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1029 SPPPGWNPRG-ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCCCCCCccc-eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec
Confidence 3344566654 6777889999999999998865 89999999999999998542 1223334456789999999
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc--ccceEEEEEeeCCCc-EEEEeeCCCeEEEEeCCCCeeEE
Q 016458 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH--KGYVSCCQYVPDEDT-HLITSSGDQTCVLWDITTGLRTS 195 (389)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 195 (389)
+.+..+|+++.||.|++.+++.................+ ...|..-+|...... .++.+...+.|..||++......
T Consensus 1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 999999999999999999998732111111112222222 223333444443333 78888999999999999887666
Q ss_pred EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE-eeeccceEEEEEecC---CCEEEEEe--
Q 016458 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPD---GNRFGTGS-- 269 (389)
Q Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~---~~~l~~~~-- 269 (389)
.... ....+.|++++.+| .++.++.|+..|.+.+||+|-. .++..+ .++..+++.+..+|- ....++++
T Consensus 1188 ~lk~---~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1188 RLKN---QLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred hhhc---CccccceeEEEecC-CceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence 6533 34456799999999 8889999999999999999977 555444 356678888888873 24555444
Q ss_pred cCCeEEEEECCCCceeeEeeccCCC--------------CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE---
Q 016458 270 DDGTCRLFDIRTGHQLQVYYQQHGE--------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV--- 332 (389)
Q Consensus 270 ~dg~i~i~d~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--- 332 (389)
..+.|.+|++.++.....+...... .........++...+.++++|+.|+.|+.||.......
T Consensus 1263 ~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~ 1342 (1431)
T KOG1240|consen 1263 SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYA 1342 (1431)
T ss_pred CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccccc
Confidence 5778999999998776666544111 01112233445555678999999999999996432221
Q ss_pred --------------------------Ee-------------------e----cCcCCCCCCCeeEEEECC-CCCeEEeee
Q 016458 333 --------------------------LN-------------------L----GSLQNSHEGRITCLGLSA-DGSALCTGS 362 (389)
Q Consensus 333 --------------------------~~-------------------~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 362 (389)
.. + ......|..+|++|++.. +..+|++++
T Consensus 1343 ~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s 1422 (1431)
T KOG1240|consen 1343 VPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSS 1422 (1431)
T ss_pred ccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEec
Confidence 00 0 000124777899998765 345899999
Q ss_pred CCCeeEE
Q 016458 363 WDTNLKV 369 (389)
Q Consensus 363 ~dg~i~i 369 (389)
.||.|+|
T Consensus 1423 ~dG~Iki 1429 (1431)
T KOG1240|consen 1423 RDGVIKI 1429 (1431)
T ss_pred CCCeeee
Confidence 9999999
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.92 E-value=7.5e-21 Score=169.07 Aligned_cols=293 Identities=33% Similarity=0.581 Sum_probs=233.2
Q ss_pred ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-eeEEEeeCC-CcEEEEEE-CCCCc-EEEEecC-CCcEEEE
Q 016458 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-KTHAIKLPC-AWVMTCAF-SPTGQ-SVACGGL-DSVCSIF 136 (389)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-dg~i~vw 136 (389)
.+.+|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+.... ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998887 666666644 36777777 88887 5555444 9999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
+... .......+..|...|..+.|+|++ ..+++++. |+.+++|++..+.....+ ..|...+.+++++
T Consensus 140 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~ 207 (466)
T COG2319 140 DLST------PGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSSLAFS 207 (466)
T ss_pred EecC------CCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEee-----ccCCCceEEEEEc
Confidence 9986 112567788999999999999998 47777775 999999999998787777 5689999999999
Q ss_pred CCCCc-EEEEeeCCCceEEEeCCCCCccee-EEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce-eeEeeccC
Q 016458 216 GSNSR-MFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQH 292 (389)
Q Consensus 216 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~ 292 (389)
| ++. .+++++.|+.|++||.... .... .+..|.... ...|+|++.++++++.|+.+++|+++.... ....
T Consensus 208 ~-~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---- 280 (466)
T COG2319 208 P-DGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---- 280 (466)
T ss_pred C-CcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE----
Confidence 7 555 5555589999999998854 5555 577787775 448999998999999999999999987765 3333
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee-eCCCeeEEee
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKVNL 371 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~~ 371 (389)
..+...+.++.|+|++..+++++.|+.+.+||........... ...|...+..+.|.+++..++.+ ..|+.+.+
T Consensus 281 -~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 355 (466)
T COG2319 281 -SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL-- 355 (466)
T ss_pred -ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEe--
Confidence 1224469999999988888889889899999998877666652 13677789999994343556655 67889998
Q ss_pred cceecccCc
Q 016458 372 GFWRVQEGA 380 (389)
Q Consensus 372 ~~W~~~~~~ 380 (389)
|++....
T Consensus 356 --~~~~~~~ 362 (466)
T COG2319 356 --WDLRTGK 362 (466)
T ss_pred --eecCCCc
Confidence 9998776
No 170
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-24 Score=174.64 Aligned_cols=308 Identities=18% Similarity=0.358 Sum_probs=240.3
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECC--CCcEEEEecCCCc
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSP--TGQSVACGGLDSV 132 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~ 132 (389)
.+.....|.+|.+.|..|.|+..|..|++|+.|..|.+||...+.....+. +|...|..-.|-| +...+++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 345666788999999999999999999999999999999999988877664 6777888888888 4567899999999
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC---Ce
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA---DV 209 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~v 209 (389)
+++=.+.... ...-...+..|.++|..++.-|+.+..|.+++.|+.+.-+|++.+.....+... ..+.. ..
T Consensus 211 vr~s~i~~t~----~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr--~~~~~~~v~L 284 (559)
T KOG1334|consen 211 VRVSEILETG----YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR--EADEKERVGL 284 (559)
T ss_pred eeeeeecccc----ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee--ccCCccceee
Confidence 9998776532 223356677899999999999999999999999999999999987665554321 23333 67
Q ss_pred eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc-----eeEEeee------ccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-----VRTFHGH------EGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (389)
..++..|.+.+.+++++.|..+++||.+...+. +..+.+| ...|++++|+.++.-|+++..|-.|++|.
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence 889999988889999999999999998864222 2333222 34699999998887788888888999995
Q ss_pred CCCCce------------eeEeeccCCCCCCCCeeEEEe-CCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCC
Q 016458 279 IRTGHQ------------LQVYYQQHGENEIPHVTSIAF-SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 345 (389)
Q Consensus 279 ~~~~~~------------~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 345 (389)
-..+.- ...... ++.....|..+-| -|...|+++|+.-|.|.||+-.+++.+..+ .+-...
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYK--GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M----egDr~V 438 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYK--GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM----EGDRHV 438 (559)
T ss_pred cccccCCCCCCCcchhhccchhhc--ccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh----hcccce
Confidence 432211 111011 1112223666664 578889999999999999999999988877 455559
Q ss_pred eeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 346 ITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 346 v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
|+||.-+|--..||+.|-|.-|+| |...+.
T Consensus 439 VNCLEpHP~~PvLAsSGid~DVKI----WTP~~~ 468 (559)
T KOG1334|consen 439 VNCLEPHPHLPVLASSGIDHDVKI----WTPLTA 468 (559)
T ss_pred EeccCCCCCCchhhccCCccceee----ecCCcc
Confidence 999999999999999999999999 988443
No 171
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.92 E-value=6.2e-23 Score=156.66 Aligned_cols=250 Identities=15% Similarity=0.256 Sum_probs=187.9
Q ss_pred cccCcEEEEEEcCCCC-----eEEEEecCCcEEEEeCCCCCee----EEE-----eeCCCcEEEEEECC-CCcEEEEecC
Q 016458 65 GHAGKVYSLDWTSERN-----RIVSASQDGRLIVWNALTSQKT----HAI-----KLPCAWVMTCAFSP-TGQSVACGGL 129 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~-----~l~~~~~dg~v~iw~~~~~~~~----~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~ 129 (389)
.|.-+++.+-|.|+.. +|||.+ | .+|+|.+...+.. ..+ ..+..++++..|+. +.+++.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5888999999999763 566544 3 7999988642211 111 23457899999987 7788999999
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 209 (389)
|-+..|||++.+. ...+...+-.|..+|.+++|...+...|++.+.||.|++||++..+....+... .....+.
T Consensus 172 DTTCTiWdie~~~----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~--p~~~~pL 245 (364)
T KOG0290|consen 172 DTTCTIWDIETGV----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED--PSPSTPL 245 (364)
T ss_pred cCeEEEEEEeecc----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC--CCCCCcc
Confidence 9999999999852 223567788999999999999988889999999999999999987655544221 2225678
Q ss_pred eEEEeeCCCCcEEEEeeCC-CceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeE
Q 016458 210 LSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQV 287 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 287 (389)
..++|++.+.+++++-..| ..|.|.|+|.+..++..+.+|.+.|+.++|.| ....|++++.|..+.+||+.+.-....
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 9999999888988876554 57999999999899999999999999999999 567899999999999999976433111
Q ss_pred eeccCCCCCCCCeeEEEeCCC-CCEEEEEecCCcEEE
Q 016458 288 YYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYV 323 (389)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i 323 (389)
......-.....|+.+.|++. +..++++... .+.+
T Consensus 326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 326 EDPILAYTAGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred CCchhhhhccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 100000112234999999964 5577776543 4443
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.91 E-value=1.5e-24 Score=187.57 Aligned_cols=283 Identities=19% Similarity=0.258 Sum_probs=220.8
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
++.++.|.||.++|+|+.|...|.++++|+.|..|+||..+++.++....+|.+.++.++.+.++.++++++.|..|++|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
.+..+. ....+.+|++.|++++|+|- .+.+.||++++||.+-. .....+..........+.++.+..
T Consensus 260 rl~~~~-------pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 260 RLPDGA-------PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFEN 326 (1113)
T ss_pred ecCCCc-------hHHHHhccccceeeeccCcc-----ccCCCCCceEecccccc-ccccCCCCCCcccccceeeeeccc
Confidence 998765 67888999999999999994 27889999999998721 111111111122334556666665
Q ss_pred CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC-CCEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (389)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 295 (389)
++.-+++++.|+.-..|.+... ..+...+.-+.++.+ ..+.+++-.+-.+.+|++.++........+..
T Consensus 327 -~~~~f~Tgs~d~ea~n~e~~~l-------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-- 396 (1113)
T KOG0644|consen 327 -NGDRFLTGSRDGEARNHEFEQL-------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-- 396 (1113)
T ss_pred -cccccccccCCcccccchhhHh-------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--
Confidence 7778899999999888876532 112222222222222 24667777888899999999987776655443
Q ss_pred CCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 296 EIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 296 ~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.+..+.++|-.. ...+++.||...|||+-.|.+++... .+| +.+..-+||+||..++....-|.+.|
T Consensus 397 ---~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~---~gh-~kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 397 ---EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF---IGH-GKLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred ---ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee---ccc-ceeeccccCCCCceEecCCCCCceEE
Confidence 488899999665 44567899999999999998887774 344 45667799999999998888899988
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=2.6e-22 Score=153.14 Aligned_cols=278 Identities=19% Similarity=0.257 Sum_probs=197.9
Q ss_pred eEEEEe----cCCcEEEEeCCCCCe---eEEEeeCCCcEEEEEECCCCc-EEEEecCC-------CcEEEEeCCCCCCCC
Q 016458 81 RIVSAS----QDGRLIVWNALTSQK---THAIKLPCAWVMTCAFSPTGQ-SVACGGLD-------SVCSIFNLNSPTDKD 145 (389)
Q Consensus 81 ~l~~~~----~dg~v~iw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d-------g~i~vw~~~~~~~~~ 145 (389)
.+++|. .|+.|.+.++..+.. -..+..+.+.|..++-+|... .|+++..+ ..+.||.+..+....
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 445554 367777777655432 234556778899999999554 45554331 247899998755332
Q ss_pred C--CCcceeeec-ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-EEEecCcccCCCCCCeeEEEeeC-CCCc
Q 016458 146 G--NLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISG-SNSR 220 (389)
Q Consensus 146 ~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 220 (389)
. .+.....+. .+-+.|.|+.|.|++++ +++-. |..|.+|++..+.. ...+.......+....++-+|+| .+++
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 1 222333333 45578999999998754 54444 88999999988766 45554433345667788999999 4555
Q ss_pred EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCC-EEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
.+++ ..|+++..||+|+..+....-.+|...|..+.|+|+.+ +|++++.||.|++||.+..+....-. +.|..+
T Consensus 186 qv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el----~~HsHW 260 (370)
T KOG1007|consen 186 QVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL----PGHSHW 260 (370)
T ss_pred eEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc----CCCceE
Confidence 5554 56899999999988666666678989999999999765 67899999999999998765443322 345558
Q ss_pred eeEEEeCCC-CCEEEEEecCCcEEEEEcccce-----------------------------EEEeecCcCCCCCCCeeEE
Q 016458 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAK-----------------------------VVLNLGSLQNSHEGRITCL 349 (389)
Q Consensus 300 i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~~~~~v~~~ 349 (389)
+.++.|+|. .+++++|+.|..|.+|....-. .+.++ ..|+..|+++
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty----dehEDSVY~~ 336 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY----DEHEDSVYAL 336 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc----cccccceEEE
Confidence 999999996 4588899999999999643211 11122 5689999999
Q ss_pred EECC-CCCeEEeeeCCCeeEE
Q 016458 350 GLSA-DGSALCTGSWDTNLKV 369 (389)
Q Consensus 350 ~~~~-~~~~l~~~~~dg~i~i 369 (389)
+||. |.-.+|+-+.||.+.|
T Consensus 337 aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 337 AWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred eeccCCCeeEEEeccCceEEe
Confidence 9987 6678899999999998
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=1.6e-23 Score=162.45 Aligned_cols=253 Identities=17% Similarity=0.270 Sum_probs=189.3
Q ss_pred ccCcEEEEEEcCC----CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC-cEEEEecCCCcEEEEeCCC
Q 016458 66 HAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 66 h~~~v~~~~~~~~----~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~ 140 (389)
|......++|+-+ ..+||.|+.-|.|+|.|+.+++....+.+|...|+.+.++|+. +++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6777888888764 3489999999999999999999999999999999999999954 7889999999999999998
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec----------------------
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG---------------------- 198 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------- 198 (389)
.. ...+..-+.+|.+.|.++.|++++ .++++++.|.+|++|++...+....+.
T Consensus 168 ~~----Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 168 DV----CVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred Ce----EEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 54 122233356899999999999998 589999999999999998432111110
Q ss_pred C-cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc-------------eeEEeeeccceE--EEEEecCC
Q 016458 199 G-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-------------VRTFHGHEGDVN--TVKFFPDG 262 (389)
Q Consensus 199 ~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~~~i~--~~~~~~~~ 262 (389)
. .....|...|-|+.|. ++++++-+.++.|..|......+. +..+.-....|. ..+|.|-+
T Consensus 243 ~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ 319 (385)
T ss_pred cccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence 0 0113455666666664 478999999999999987221111 112222222333 34566778
Q ss_pred CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
+.|+.|...|.|.+||++...+..... .........|...+|+.||..|+..++|+.|.-||..
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~~~tt-l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPPKCTT-LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCccCce-EEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 899999999999999999876642211 1112334469999999999999999999999999853
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=1e-19 Score=161.82 Aligned_cols=302 Identities=33% Similarity=0.592 Sum_probs=237.6
Q ss_pred CCCCcccCCCc-ceeeeecccccCcEEEEEEcCCCCeEEEEec-CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc-
Q 016458 46 GRAPVSFGPTD-LVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ- 122 (389)
Q Consensus 46 ~~~~~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 122 (389)
+.....|+... ......+..|...|.+++|+|++..+++++. |+.+++|+...+..+..+..|...+.+++|+|++.
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence 44566677776 7888899999999999999999998888885 99999999999888999999999999999999998
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCccee-eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-EEEecCc
Q 016458 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGE 200 (389)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~ 200 (389)
.+++++.|+.|++||...+. ... .+..|.... ...|++++ ..+++++.|+.+++|+...... ...+
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~--- 280 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGK-------LLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTL--- 280 (466)
T ss_pred EEEEecCCCcEEEEECCCCc-------EEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEE---
Confidence 55555899999999776432 334 577777775 44899987 6888999999999999987765 3333
Q ss_pred ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEecCCCEEEEE-ecCCeEEEE
Q 016458 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTG-SDDGTCRLF 277 (389)
Q Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~ 277 (389)
..|...+.++.+.| .+..+++++.|+.+.+||.... ....... .|...+..+.|.+++..++.+ ..|+.+.+|
T Consensus 281 --~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 356 (466)
T COG2319 281 --SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356 (466)
T ss_pred --ecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCC-ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEee
Confidence 46788999999999 6667777888899999988876 4444443 677789999994332556555 688999999
Q ss_pred ECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE-EecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (389)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (389)
++........... .. .+..+.+++ ...+.. +..++.+.+|+........... .+...+....+++++.
T Consensus 357 ~~~~~~~~~~~~~-~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 425 (466)
T COG2319 357 DLRTGKPLKTLEG-HS-----NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLD----GHTSRVTSLDFSPDGK 425 (466)
T ss_pred ecCCCceeEEecC-Cc-----eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeecc----CCCCcEEEEEECCCCc
Confidence 9988772222211 11 167888888 544443 6889999999999888877763 3227899999999999
Q ss_pred eEEeeeCCCeeEEeecceeccc
Q 016458 357 ALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 357 ~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
.+++++.++.+++ |+...
T Consensus 426 ~~~~~~~~~~~~~----~~~~~ 443 (466)
T COG2319 426 SLASGSSDNTIRL----WDLKT 443 (466)
T ss_pred EEEEecCCCcEEE----EeccC
Confidence 9999999999999 99877
No 176
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.90 E-value=2.3e-22 Score=166.05 Aligned_cols=263 Identities=20% Similarity=0.314 Sum_probs=193.3
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEE-CC-------CCcEEEEecCCCcEEEE
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF-SP-------TGQSVACGGLDSVCSIF 136 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l~~~~~dg~i~vw 136 (389)
-|...|.|+.|+.....+.+++ |..+.+|+-.+......+..+...+....+ -+ ....|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4666778999998776666554 556666654444444444333332222111 11 23568888999999998
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
+-... +......|.+.+.+-.|+|+| .-|++++.||.|++|.- +|....++ .....+|.|++|.|
T Consensus 91 ~k~~r--------VE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLRStl-----~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 91 NKSAR--------VERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLRSTV-----VQNEESIRCARWAP 155 (737)
T ss_pred cccch--------hhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHHHHH-----hhcCceeEEEEECC
Confidence 76542 556778999999999999998 67999999999999985 44433333 45677899999999
Q ss_pred CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCC
Q 016458 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296 (389)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 296 (389)
..++.+++.+ +.+.|=-+... ..+..+++|.+-|.++.|++..+++++|+.|-..++||.. |..+..... +
T Consensus 156 ~S~~vl~c~g--~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~-----~ 226 (737)
T KOG1524|consen 156 NSNSIVFCQG--GHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA-----E 226 (737)
T ss_pred CCCceEEecC--CeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh-----h
Confidence 7777777654 66777666655 5567889999999999999999999999999999999965 455444333 3
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
..+|++++|+|+ +.++.++.+ .++ +. ....+.|..++||+||..++.|+..|.+.+
T Consensus 227 ey~ITSva~npd-~~~~v~S~n-t~R------------~~---~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 227 EYAITSVAFNPE-KDYLLWSYN-TAR------------FS---SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccceeeeeeccc-cceeeeeee-eee------------ec---CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 346999999999 666666543 343 21 456788999999999999999999998876
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=8e-22 Score=156.76 Aligned_cols=217 Identities=20% Similarity=0.295 Sum_probs=169.9
Q ss_pred eeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec--CcccCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG--GEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (389)
Q Consensus 152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (389)
-.+.+|+++|..+.|+|.+++.+++|+.|.+|.||++..+.....+. .....+|...|-.++|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 45679999999999999999999999999999999997663322221 1112789999999999999999999999999
Q ss_pred ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458 230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (389)
Q Consensus 230 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (389)
.|.+||+.++ ..+..+. |...|.++.|+.||.+|++.+.|..|+|||.++++.+..-..+.+. .-..+.|-.+|
T Consensus 155 ~v~iWnv~tg-eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~----k~~Raifl~~g 228 (472)
T KOG0303|consen 155 TVSIWNVGTG-EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA----KPARAIFLASG 228 (472)
T ss_pred eEEEEeccCC-ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC----CcceeEEeccC
Confidence 9999999998 6666666 9999999999999999999999999999999999988877444433 24556677888
Q ss_pred CEEEEEe---cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee-CCCeeEEeecceecccCc
Q 016458 310 RLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 310 ~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~W~~~~~~ 380 (389)
..+-+|. ++..+-+||..+.+....+.. ...++.|.---|++|...+..+| .|+.|+. +.+.+..
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e--lDtSnGvl~PFyD~dt~ivYl~GKGD~~IRY----yEit~d~ 297 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQE--LDTSNGVLLPFYDPDTSIVYLCGKGDSSIRY----FEITNEP 297 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeEE--eccCCceEEeeecCCCCEEEEEecCCcceEE----EEecCCC
Confidence 8555553 366899999776444333322 12344565556788888776655 5999998 8887765
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8.5e-23 Score=169.39 Aligned_cols=265 Identities=18% Similarity=0.293 Sum_probs=196.0
Q ss_pred EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC-CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP-TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (389)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (389)
++..|...++.++|+|....|++++.||.+.+|++... ...........++.+|.++|.|+++.+.+ ..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeeccCce
Confidence 45567788999999999999999999999999999431 12234556778899999999999999987 78999999999
Q ss_pred EEEEeCCCC------eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEE
Q 016458 183 CVLWDITTG------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV 256 (389)
Q Consensus 183 i~iwd~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~ 256 (389)
|+.|++... .....+. ....+|.+.+..+++++ ....|++++.||++++|+......+........+....+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~-~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLS-GTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhc-cceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceE
Confidence 999966522 1111111 11268999999999998 677799999999999999886633222212222334455
Q ss_pred EEecCC-CEEEEEecCCeEEEEECCCCceeeEeeccCC--CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEE
Q 016458 257 KFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333 (389)
Q Consensus 257 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 333 (389)
.+-... ...++...-+.-.+++......+..+..... ......+..+.+.|.+.+.+++..|+.|+++|..+++++.
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 554322 2233333334444445444444444432221 1222357889999999999999999999999999999999
Q ss_pred eecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 334 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
.. ..|...++++++.|+|.+|++++.||.+++ |++...
T Consensus 526 s~----~a~~~svtslai~~ng~~l~s~s~d~sv~l----~kld~k 563 (577)
T KOG0642|consen 526 SM----VAHKDSVTSLAIDPNGPYLMSGSHDGSVRL----WKLDVK 563 (577)
T ss_pred he----eeccceecceeecCCCceEEeecCCceeeh----hhccch
Confidence 88 799999999999999999999999999999 998654
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=3.7e-22 Score=154.71 Aligned_cols=238 Identities=21% Similarity=0.380 Sum_probs=185.2
Q ss_pred cEEEEEEc-------CCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-----CcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 69 KVYSLDWT-------SERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-----AWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 69 ~v~~~~~~-------~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
.|...+|- |+.+++|+.+.+.-|++||.-+|+....+..-. ....+++|+|||..|++| ....|+++
T Consensus 106 tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvF 184 (406)
T KOG2919|consen 106 TVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVF 184 (406)
T ss_pred EEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEe
Confidence 47777775 566799999999999999999999888776432 346789999999999977 46799999
Q ss_pred eCCCCCCCCCC-CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458 137 NLNSPTDKDGN-LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 137 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
|+..+...... ........+..+-+.|++|+|.....++.|+....+-||.-..+.+...+ .+|.+.|+.+.|.
T Consensus 185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-----ggh~gGvThL~~~ 259 (406)
T KOG2919|consen 185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-----GGHGGGVTHLQWC 259 (406)
T ss_pred eccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-----cccCCCeeeEEec
Confidence 99543321111 11122234457889999999998789999999999999999888888888 7999999999999
Q ss_pred CCCCcEEEEee-CCCceEEEeCCCCCcceeEEeeecc-ceEEEEE--ecCCCEEEEEecCCeEEEEECCC-CceeeEeec
Q 016458 216 GSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEG-DVNTVKF--FPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQ 290 (389)
Q Consensus 216 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~ 290 (389)
+ +++.|++|. .|..|..||+|....++..+..|.. .-..|.| .|++++|++|+.||.|++||+.. +.....+..
T Consensus 260 e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~ 338 (406)
T KOG2919|consen 260 E-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN 338 (406)
T ss_pred c-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc
Confidence 9 555666655 4789999999998888888887766 3344544 57899999999999999999998 554444433
Q ss_pred cCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458 291 QHGENEIPHVTSIAFSISGRLLFAGYSN 318 (389)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (389)
.. ..++.++++|-=.++++++..
T Consensus 339 ~s-----d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 339 YS-----DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cc-----ccccceecCcccceeeeccCc
Confidence 32 348999999997777777543
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=3.4e-22 Score=169.37 Aligned_cols=255 Identities=15% Similarity=0.250 Sum_probs=197.4
Q ss_pred CCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEe
Q 016458 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG 127 (389)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 127 (389)
....+++.+.....+|+||++.|+|++|+.||+++|+|+.|..|.+|+..-...+ --.|...|.|+.|+|-...|+++
T Consensus 34 rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~LasC 111 (1081)
T KOG1538|consen 34 RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLASC 111 (1081)
T ss_pred EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhhc
Confidence 3457889999999999999999999999999999999999999999985432222 13577889999999999999988
Q ss_pred cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
+-+ ..-+|..+... .........+.+++|..|| ++++.|-.+|+|.+-+-........-.+ .+..+
T Consensus 112 sLs-dFglWS~~qK~---------V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rp---gg~Ns 177 (1081)
T KOG1538|consen 112 SLS-DFGLWSPEQKS---------VSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERP---GGSNS 177 (1081)
T ss_pred chh-hccccChhhhh---------HHhhhhheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCC---CCCCC
Confidence 754 46788876522 1112234678899999998 8999999999999987554443333221 46788
Q ss_pred CeeEEEeeCCC----CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 208 DVLSVSISGSN----SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 208 ~v~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
+|.+++|+|.. ...+++.....++.+|.+.. +.+..-+.-+-...|+.+.++|.+++.|+.|+.+.+|. +.|-
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~Gv 254 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGV 254 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCe
Confidence 99999999843 34677777777888887762 33333333445678999999999999999999999997 4565
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
.+.+... ...+|..++..|++++++.|+.||+|..|++
T Consensus 255 rLGTvg~-----~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 255 RLGTVGE-----QDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEeeccc-----cceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 5555533 2347999999999999999999999999985
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.90 E-value=1.4e-21 Score=169.74 Aligned_cols=259 Identities=17% Similarity=0.217 Sum_probs=190.0
Q ss_pred ccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCe--eEE----EeeCCCcEEEEEECCCC--cEEEEecCCCcEEEE
Q 016458 66 HAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQK--THA----IKLPCAWVMTCAFSPTG--QSVACGGLDSVCSIF 136 (389)
Q Consensus 66 h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~--~~~----~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vw 136 (389)
-...|+|+.|+| +.+++|.|+.+|.|.+||+..+.. ... ...|..+++.+.|..+. .-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 345799999999 556888899999999999987765 222 23577899999997644 449999999999999
Q ss_pred eCCCCCCCCCCCcceeee-----cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEE--EecC-cccCCCCCC
Q 016458 137 NLNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VFGG-EFQSGHTAD 208 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~-~~~~~~~~~ 208 (389)
+++.-..+.......... ..-...+++++|.+..+..|+.|+.+|.|..-+-....... .+.. .....|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 887643221111111111 12234688999999988999999999999874433222111 1111 112578899
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC-CCEEEEEecCCeEEEEECCCCceeeE
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQV 287 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~ 287 (389)
|+++.++|.....+++++ |.+++||.......++..+..+...+++++|||. ...|+++..||.|.+||+........
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 999999998777777777 9999999988444778788878888999999994 45778888899999999976543333
Q ss_pred eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
...... ....+.+.|+++|+.|++|...|.+++|++..
T Consensus 480 ~s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 480 LSQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 222111 23467888999999999999999999999853
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3e-20 Score=138.65 Aligned_cols=275 Identities=15% Similarity=0.196 Sum_probs=197.6
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCC---------C-CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALT---------S-QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~ 138 (389)
.|.+-+|+|.+++|++|+.+|.|.++.+.+ + ..+...+.|.++++.++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 467778999999999999999999998743 2 2344557899999999998 55666665 599999988
Q ss_pred CCCCCCCCCCcc-eeeeccc-----ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 139 NSPTDKDGNLPV-SRMLSGH-----KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 139 ~~~~~~~~~~~~-~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
+...+.....+. ......| -..|+++...|..+ -++.++.|+.++-||+++|+....+ .+|.+.+.++
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~-----rGHtDYvH~v 162 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREY-----RGHTDYVHSV 162 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEE-----cCCcceeeee
Confidence 764321111000 0111112 24688899998874 4666669999999999999999999 8999999999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---------ecc-ceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---------HEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (389)
.--. ....+++|++||++++||.++. +.+..+.. |.+ .|.+++. +..++++|+. ..+.+|.++..
T Consensus 163 v~R~-~~~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrss 237 (325)
T KOG0649|consen 163 VGRN-ANGQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSS 237 (325)
T ss_pred eecc-cCcceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCC
Confidence 8855 5567889999999999999987 55554432 222 3556665 4557777654 58999999999
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC-CCeEEee
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTG 361 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 361 (389)
++...+..... +..+.|.. ..+++++..+.|.-|.+ +|...... .......++..|+.. -++|-.+
T Consensus 238 e~t~vfpipa~------v~~v~F~~--d~vl~~G~g~~v~~~~l-~Gvl~a~i----p~~s~~c~s~s~~~~p~k~~s~a 304 (325)
T KOG0649|consen 238 ESTCVFPIPAR------VHLVDFVD--DCVLIGGEGNHVQSYTL-NGVLQANI----PVESTACYSASWQTSPIKFISIA 304 (325)
T ss_pred CceEEEecccc------eeEeeeec--ceEEEeccccceeeeee-ccEEEEec----cCCccceeeecccCCceEEEEec
Confidence 99888876543 67788854 46777777888999986 44444444 333445566666543 3566667
Q ss_pred eCCCeeEEe
Q 016458 362 SWDTNLKVN 370 (389)
Q Consensus 362 ~~dg~i~i~ 370 (389)
+..+.+.|+
T Consensus 305 g~s~~~~i~ 313 (325)
T KOG0649|consen 305 GFSNKLHIL 313 (325)
T ss_pred ccceeeeee
Confidence 778888873
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.90 E-value=3e-20 Score=158.08 Aligned_cols=284 Identities=12% Similarity=0.131 Sum_probs=179.7
Q ss_pred EEEEecCCcEEEEeCCC-CC--eeEEEeeCCCcEEEEEECCCCcEEEEec-CCCcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458 82 IVSASQDGRLIVWNALT-SQ--KTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (389)
Q Consensus 82 l~~~~~dg~v~iw~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (389)
+++...++.|.+|++.+ ++ .+..+.. .+....++++|++++|++++ .++.|.+|+++... .+....... .
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g----~l~~~~~~~-~ 78 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG----ALTFAAESP-L 78 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC----ceEEeeeec-C
Confidence 34446789999999964 33 3344433 35577899999999987764 57889999997311 111122211 2
Q ss_pred ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEe
Q 016458 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWD 235 (389)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d 235 (389)
.+....+.++|++..++++...++.|.+|++.+.. ....... .........++++| +++++ ++...++.|.+||
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d 154 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI---IEGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFT 154 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee---ccCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEE
Confidence 23567899999985444444468999999996432 1111100 12234567788999 55555 5566679999999
Q ss_pred CCCCCcce----eEEe-eeccceEEEEEecCCCEEEEEec-CCeEEEEECCC--Cce--eeEeeccCC-CCCCCCeeEEE
Q 016458 236 TRVASRAV----RTFH-GHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRT--GHQ--LQVYYQQHG-ENEIPHVTSIA 304 (389)
Q Consensus 236 ~~~~~~~~----~~~~-~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~--~~~~~~~~~-~~~~~~i~~~~ 304 (389)
+....... .... ........++|+|++++++++.. ++.|.+|++.. ++. ...+..... .........+.
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 97642221 0111 12334678999999999988876 89999999974 222 222211100 01111234689
Q ss_pred eCCCCCEEEEEec-CCcEEEEEcccce-EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC-CCeeEEeecceecc--cC
Q 016458 305 FSISGRLLFAGYS-NGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKVNLGFWRVQ--EG 379 (389)
Q Consensus 305 ~~~~~~~l~~~~~-dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~W~~~--~~ 379 (389)
++|+|++++++.. ++.|.+|++.... ........ .. ......++++|||++|++++. ++.|.+ |+++ +|
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~-~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v----~~~~~~~g 308 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ-PT-ETQPRGFNIDHSGKYLIAAGQKSHHISV----YEIDGETG 308 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE-ec-cccCCceEECCCCCEEEEEEccCCcEEE----EEEcCCCC
Confidence 9999999999864 6889999986432 11111110 11 134567999999999998776 899999 9874 45
Q ss_pred cc
Q 016458 380 AL 381 (389)
Q Consensus 380 ~~ 381 (389)
.+
T Consensus 309 ~l 310 (330)
T PRK11028 309 LL 310 (330)
T ss_pred cE
Confidence 44
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=3.9e-21 Score=152.87 Aligned_cols=238 Identities=18% Similarity=0.241 Sum_probs=182.8
Q ss_pred EEeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458 104 AIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (389)
Q Consensus 104 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (389)
.+.+|.++|..++|+| +...+|+|+.|.+|.||++..+............+.+|...|-.++|+|.-.+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 667889999999999999987654444455678899999999999999998899999999999
Q ss_pred EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc-ceEEEEEecC
Q 016458 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPD 261 (389)
Q Consensus 183 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~ 261 (389)
|.+||+.+++.+..+ .|.+.|.++.|+. ++.+|++++.|..|+|||.+.+ +.+..-.+|.+ .-..+.|-.+
T Consensus 156 v~iWnv~tgeali~l------~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 156 VSIWNVGTGEALITL------DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred EEEEeccCCceeeec------CCCCeEEEEEecc-CCceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEecc
Confidence 999999999988887 4999999999998 9999999999999999999988 67776677876 3456678788
Q ss_pred CCEEEEEe---cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE-EecCCcEEEEEcccceEEEe-ec
Q 016458 262 GNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVLN-LG 336 (389)
Q Consensus 262 ~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~-~~ 336 (389)
+.++.+|. .+..+-+||.........+.... ....|.---|.+|.++++. |-.|+.|+-|.+....+... +.
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD---tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln 304 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELD---TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLN 304 (472)
T ss_pred CceeeeccccccccceeccCcccccCcceeEEec---cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEec
Confidence 88555554 46789999977655443332211 1223555567888887765 55699999999877654322 22
Q ss_pred CcCCCCCCCeeEEEECCC
Q 016458 337 SLQNSHEGRITCLGLSAD 354 (389)
Q Consensus 337 ~~~~~~~~~v~~~~~~~~ 354 (389)
. .....+-..+.|-|.
T Consensus 305 ~--f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 305 T--FSSKEPQRGMGFMPK 320 (472)
T ss_pred c--cccCCcccccccccc
Confidence 1 122234455666553
No 185
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.9e-22 Score=166.62 Aligned_cols=251 Identities=15% Similarity=0.209 Sum_probs=195.6
Q ss_pred eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC
Q 016458 101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180 (389)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 180 (389)
+...+.+|.+.|.++...|.|.+|++|+.||+|+||.+.++. +..... ..+.|.|++|+|.+...++++..+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-------cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-------CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-------EEEEEe-ecceeEEEEecCCCCceeEEEEec
Confidence 345567899999999999999999999999999999999866 444433 346899999999887666666666
Q ss_pred CeEEEEeCCCCeeEE----------------------EecC----------cccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458 181 QTCVLWDITTGLRTS----------------------VFGG----------EFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (389)
Q Consensus 181 g~i~iwd~~~~~~~~----------------------~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (389)
..+.+.+..-|..+. .... .....|...|..+.|+. .+.+|++...+
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~ 542 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPD 542 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccC
Confidence 666666543331100 0000 01134677899999998 88899886653
Q ss_pred ---CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458 229 ---STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (389)
Q Consensus 229 ---g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (389)
..|.|+++... ....-|....+.|.++.|+|...+|++++. ..|++||+........+..... .|..++.
T Consensus 543 ~~~~~VliHQLSK~-~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k-----wiS~msi 615 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKR-KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK-----WISSMSI 615 (733)
T ss_pred CCcceEEEEecccc-cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe-----eeeeeee
Confidence 47889998766 444556556778999999999999998876 5899999998776666544433 5999999
Q ss_pred CCCCCEEEEEecCCcEEEEEcccc-eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEee
Q 016458 306 SISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNL 371 (389)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~ 371 (389)
+|.|..|++|+.|+.+..||+.-. ++.+++ ..|...+++++|++.-.++++|+.||.+.|+.
T Consensus 616 hp~GDnli~gs~d~k~~WfDldlsskPyk~l----r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 616 HPNGDNLILGSYDKKMCWFDLDLSSKPYKTL----RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred cCCCCeEEEecCCCeeEEEEcccCcchhHHh----hhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 999999999999999999999854 566666 78999999999999999999999999999933
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.90 E-value=1.3e-19 Score=143.15 Aligned_cols=240 Identities=15% Similarity=0.222 Sum_probs=179.7
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC--CCcEEEEeCCCCCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDK 144 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~ 144 (389)
...+..+.|+.+...|..|+.|| .++|+................|.-+-|+. .++|..+. -+.++++++....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~-- 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT-- 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc--
Confidence 34577788999999999999998 78898776655433334444566666764 44444433 3458888887533
Q ss_pred CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE
Q 016458 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (389)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 224 (389)
.+... ....+|.++.++.+ .|+++-.+. |+|||+.+.+.+.++... ..+...+.++..++ .+.+++.
T Consensus 80 -----~ICe~-~fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklLhTI~t~--~~n~~gl~AlS~n~-~n~ylAy 146 (391)
T KOG2110|consen 80 -----TICEI-FFPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLLHTIETT--PPNPKGLCALSPNN-ANCYLAY 146 (391)
T ss_pred -----eEEEE-ecCCceEEEEEccc---eEEEEEccc-EEEEecccceeehhhhcc--CCCccceEeeccCC-CCceEEe
Confidence 12221 23467888888763 455555544 999999999998887421 23455566666665 4456654
Q ss_pred --eeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCe-EEEEECCCCceeeEeeccCCCCCCCCee
Q 016458 225 --GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (389)
Q Consensus 225 --~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~i~ 301 (389)
....|.|.+||..+. +++..+.+|.+++-+++|+++|.+||+++..|+ ||+|.+.+++.+..+..... ...|.
T Consensus 147 p~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~~~Iy 222 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---PVSIY 222 (391)
T ss_pred cCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---eeEEE
Confidence 234689999999988 888999999999999999999999999999987 79999999999999877543 33589
Q ss_pred EEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 302 SIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
+++|+|++++|++.+..++|++|.+..
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999999999999999999999998753
No 187
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=2.1e-23 Score=169.01 Aligned_cols=275 Identities=17% Similarity=0.233 Sum_probs=217.9
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
-.-..+.++.+|+.|+.|+.-|.|-.+|..+++....+... +.|.++.|..+.+++|++- ...++|||-...
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~Gt------ 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGT------ 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhh-hceEEEecCCCc------
Confidence 34668999999999999999999999999999998888765 4599999999999888875 567899997652
Q ss_pred CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (389)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (389)
....++.| ..|..+.|.|.. -+|++++..|.++--|+.+|+.+..+ ....+.+..++-+| -+..+-+|..
T Consensus 202 --ElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~-----~t~~G~~~vm~qNP-~NaVih~Ghs 271 (545)
T KOG1272|consen 202 --ELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASI-----RTGAGRTDVMKQNP-YNAVIHLGHS 271 (545)
T ss_pred --EEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHH-----HccCCccchhhcCC-ccceEEEcCC
Confidence 34444444 568889999985 78889999999999999999999988 56778888899998 7778899999
Q ss_pred CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458 228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (389)
Q Consensus 228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (389)
.|+|.+|..... .++..+..|.++|.++++.++|.|+++.+.|..++|||++....+.++...+ +...+++|.
T Consensus 272 nGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~------~a~~ls~Sq 344 (545)
T KOG1272|consen 272 NGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH------PASNLSLSQ 344 (545)
T ss_pred CceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC------Ccccccccc
Confidence 999999999887 7777888899999999999999999999999999999999988777766533 267888886
Q ss_pred CCCEEEEEecCCcEEEEE-cccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 308 SGRLLFAGYSNGDCYVWD-TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 308 ~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.| +||++ ....|.||. ...+..-...........++|..+.|.|-...|-.|...|.-.|
T Consensus 345 kg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 345 KG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred cc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 65 45555 444799995 22222111222222344568999999997777777766665444
No 188
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.6e-21 Score=147.67 Aligned_cols=213 Identities=21% Similarity=0.316 Sum_probs=160.8
Q ss_pred ecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC----eeEEEecCcccCCCCCCeeEEEee-CCCCcEEEEeeCC
Q 016458 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCD 228 (389)
Q Consensus 154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d 228 (389)
..+|..-|.++.|.+.| +.+++|+.|++|+|||.+.. .+.... ..|.+.|..+.|. |.-++.+++++.|
T Consensus 9 ~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-----rah~~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSW-----RAHDGSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred ccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeE-----EecCCcEEEEEecCccccceEEEEecC
Confidence 45788999999999998 68999999999999997654 334444 6799999999996 4568899999999
Q ss_pred CceEEEeCCCCC--------cceeEEeeeccceEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCC-----
Q 016458 229 STARLWDTRVAS--------RAVRTFHGHEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG----- 293 (389)
Q Consensus 229 g~i~i~d~~~~~--------~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----- 293 (389)
+++.||.-.... .....+....+.|+.+.|.| -|-.|++++.||.++||+....-.+......+.
T Consensus 83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence 999999752110 12334555678899999999 577899999999999999876544433322211
Q ss_pred ---CCCCCCeeEEEeCCC---CCEEEEEecC-----CcEEEEEcccce-EEEeecCcCCCCCCCeeEEEECCC----CCe
Q 016458 294 ---ENEIPHVTSIAFSIS---GRLLFAGYSN-----GDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSAD----GSA 357 (389)
Q Consensus 294 ---~~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~ 357 (389)
..+..+..|+.|+|. .++|++|+.+ +.+.||....+. .......+ ..|..+|++++|.|+ -..
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L-~d~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL-PDHTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc-CCCCCcceeeeeccccCCceee
Confidence 123445788999974 4588888766 478999876543 33322222 689999999999995 358
Q ss_pred EEeeeCCCeeEEeecceeccc
Q 016458 358 LCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 358 l~~~~~dg~i~i~~~~W~~~~ 378 (389)
||+++.|| |+| |++..
T Consensus 242 lAvA~kDg-v~I----~~v~~ 257 (361)
T KOG2445|consen 242 LAVATKDG-VRI----FKVKV 257 (361)
T ss_pred EEEeecCc-EEE----EEEee
Confidence 99999999 999 99984
No 189
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.89 E-value=1.4e-20 Score=145.90 Aligned_cols=214 Identities=17% Similarity=0.255 Sum_probs=175.1
Q ss_pred cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (389)
+.--..+|+|.+|++|+..+|++.....|.||...... ..++++.|...|+.++|+|..+.|++++.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33345689999999999999999999999999876544 678889999999999999999999999999999999985
Q ss_pred CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
.+ ..+.....+..++...+++.|+|.+ +.|++|+....|.||-++....-.. ...+...+.+.|.+++|+| ++
T Consensus 86 ~~----~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWV-sKhikkPirStv~sldWhp-nn 158 (361)
T KOG1523|consen 86 SG----GTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWV-SKHIKKPIRSTVTSLDWHP-NN 158 (361)
T ss_pred CC----CeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceeh-hhhhCCccccceeeeeccC-Cc
Confidence 32 3556677778899999999999997 7899999999999998876544322 1222356788999999999 88
Q ss_pred cEEEEeeCCCceEEEeCC-----CC------------CcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458 220 RMFVSGSCDSTARLWDTR-----VA------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~-----~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (389)
-++++|+.|+..+++..- .. +..+..+....+.+..+.|+|+|..|+-.+.|..+.+-|....
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 899999999999998642 11 1222333345678999999999999999999999999998765
Q ss_pred c
Q 016458 283 H 283 (389)
Q Consensus 283 ~ 283 (389)
.
T Consensus 239 ~ 239 (361)
T KOG1523|consen 239 S 239 (361)
T ss_pred c
Confidence 4
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.7e-20 Score=161.07 Aligned_cols=298 Identities=16% Similarity=0.208 Sum_probs=212.7
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC----CCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (389)
.|.-.++|.++||.++++|+|..||.|.+|.--. ......+.-|...|++++|+++|.+|++|+..+.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4777799999999999999999999999995322 234566778889999999999999999999999999999998
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc------cCCCCCCeeEEEe
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF------QSGHTADVLSVSI 214 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~v~~~~~ 214 (389)
++ .+.+..-.++|..+.++|++ .+.+....|..|.+....+......+.... .....+-.+.+++
T Consensus 283 ~~--------kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 283 GK--------KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred CC--------cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence 55 23344456899999999998 567777889999998876654444332111 1223455678888
Q ss_pred eCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-----------eeccceEEEEEecCCCEEEEEe--------cC--Ce
Q 016458 215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----------GHEGDVNTVKFFPDGNRFGTGS--------DD--GT 273 (389)
Q Consensus 215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~--------~d--g~ 273 (389)
+| ..+.++-.+..|.|.+||+-+. ..+..+. .+.-.+++++.+..|.++++.- .| -.
T Consensus 354 dp-r~~~~vln~~~g~vQ~ydl~td-~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 354 DP-RTNSLVLNGHPGHVQFYDLYTD-STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred cC-CCCceeecCCCceEEEEecccc-ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 88 6677888889999999999876 3333332 1223477788888899998864 23 35
Q ss_pred EEEEECCCCceeeEeeccCCCCCCCCeeEEEeC-CCCC-EEEEEecCCcEEEEEccc------ceEEEeecCcCCCCCCC
Q 016458 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS-ISGR-LLFAGYSNGDCYVWDTLL------AKVVLNLGSLQNSHEGR 345 (389)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~ 345 (389)
+++|-......-..+...-...|...+...++. +... ..++++.||.++||-+.. .............|..+
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~ 511 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP 511 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence 788876654433333222222222234444443 3333 788999999999998832 22222222222458889
Q ss_pred eeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 346 ITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 346 v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
+++++|+.||. +++.+.|++|.+ ||..+
T Consensus 512 i~a~~fs~dGs-lla~s~~~~Iti----wd~~~ 539 (792)
T KOG1963|consen 512 ITALCFSQDGS-LLAVSFDDTITI----WDYDT 539 (792)
T ss_pred ccchhhcCCCc-EEEEecCCEEEE----ecCCC
Confidence 99999999995 566778899999 99988
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2e-21 Score=151.75 Aligned_cols=272 Identities=13% Similarity=0.194 Sum_probs=193.0
Q ss_pred CCCCcccCCCcceeeeecccccCcEEEEEEcC--CCCeEEEEecCCcEEEEeCCCCCeeEEEee--CC-CcEEEEEECCC
Q 016458 46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTS--ERNRIVSASQDGRLIVWNALTSQKTHAIKL--PC-AWVMTCAFSPT 120 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~--~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~--~~-~~v~~~~~~~~ 120 (389)
......+++...+.+..+++|...++.+.|.. ....+.+|+.||+|++||++.......+.. +. .+..+++.+.+
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK 128 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence 34566788888999999999999999999987 456899999999999999988776655543 22 45777777778
Q ss_pred CcEEEEecC----CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEE
Q 016458 121 GQSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 196 (389)
Q Consensus 121 ~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 196 (389)
++.+++|.. +-.|.+||++..+. .+......|...|+++.|+|..+++|++|+.||.|.+||+.....-..
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq-----~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa 203 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQ-----LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA 203 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccc-----hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh
Confidence 888888854 67899999987442 144556789999999999999999999999999999999976532221
Q ss_pred ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee------------ccceEEEEEecCCCE
Q 016458 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------------EGDVNTVKFFPDGNR 264 (389)
Q Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~ 264 (389)
+.. ...+...|.++.|..+.-+.+.+-+..+...+|+++.+. +...+... -..+...-...+...
T Consensus 204 L~~--viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 204 LLH--VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred HHH--hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 110 035667799999997565678888999999999998774 22222111 001111111224455
Q ss_pred EEEEec-CCeEEEEECC---CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458 265 FGTGSD-DGTCRLFDIR---TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 265 l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
++.++. -|...++-+. ++.........+ ..+..-|+++.|...+.++++|+.||.+.+|..
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 555554 5555555443 222222111111 223335888999888999999999999999985
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.7e-20 Score=137.59 Aligned_cols=247 Identities=15% Similarity=0.194 Sum_probs=178.2
Q ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC---CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD---KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 187 (389)
.|..-+|+|.+++|++|..+|.|.+..+.+-.. ............+|.+++..++|.. .+|++|+. |.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEee
Confidence 355668999999999999999999999876321 1112223445589999999999984 45666655 9999998
Q ss_pred CCCCeeE------EEecCccc--CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEe
Q 016458 188 ITTGLRT------SVFGGEFQ--SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259 (389)
Q Consensus 188 ~~~~~~~------~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 259 (389)
.+..... .....+.+ ...-..|+++-..|..+.+| .++.|+.++-||++++ +..+.+++|...|.++.--
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeec
Confidence 6543221 11111111 11234688899998555554 4557999999999998 8899999999999999985
Q ss_pred cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCC-----CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEe
Q 016458 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-----EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 334 (389)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 334 (389)
.....+++|+.||++++||.++++....+.....++ ...+|.+++- +..++++|+. ..+.+|+++..+....
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCV 242 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEE
Confidence 555679999999999999999999888876544332 2234566655 4558888754 4799999999988888
Q ss_pred ecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 335 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 335 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
+. -..++..+.|..| .+++++..+.+.- |.+.
T Consensus 243 fp-----ipa~v~~v~F~~d--~vl~~G~g~~v~~----~~l~ 274 (325)
T KOG0649|consen 243 FP-----IPARVHLVDFVDD--CVLIGGEGNHVQS----YTLN 274 (325)
T ss_pred Ee-----cccceeEeeeecc--eEEEeccccceee----eeec
Confidence 73 4456778888655 5777776666666 6654
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=4.9e-20 Score=140.97 Aligned_cols=297 Identities=15% Similarity=0.205 Sum_probs=202.1
Q ss_pred eeeecccccCcEEEEEEcC--C-CCeEEEEec----CCcEEEEeC--CCCCeeEEE-eeCCCcEEEEEECCCC-----cE
Q 016458 59 CCRTLQGHAGKVYSLDWTS--E-RNRIVSASQ----DGRLIVWNA--LTSQKTHAI-KLPCAWVMTCAFSPTG-----QS 123 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~--~-~~~l~~~~~----dg~v~iw~~--~~~~~~~~~-~~~~~~v~~~~~~~~~-----~~ 123 (389)
.+..+..+- ++.++.|+. + ..+||.|+. .+.|.|-.+ .+++.+..- ..|.-+++.+.|.|+. .+
T Consensus 37 eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 344444433 589999984 2 347888873 456766654 344443332 2466789999999976 34
Q ss_pred EEEecCCCcEEEEeCCCCCCCCCC--CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee---EEEec
Q 016458 124 VACGGLDSVCSIFNLNSPTDKDGN--LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFG 198 (389)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~ 198 (389)
||+. +..+++|.+......... ......-..+..++++..|+.-.++++.+++-|.+..|||++++.. ...+
T Consensus 116 LATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL- 192 (364)
T KOG0290|consen 116 LATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL- 192 (364)
T ss_pred hhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE-
Confidence 5554 357999999853211000 0011122345679999999998889999999999999999999732 3333
Q ss_pred CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee--ccceEEEEEec-CCCEEEEEecC-CeE
Q 016458 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFP-DGNRFGTGSDD-GTC 274 (389)
Q Consensus 199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~-~~~~l~~~~~d-g~i 274 (389)
..|...|..++|.....++|++.+.||.+++||+|........+... ..+...++|++ |.+++++-..| ..|
T Consensus 193 ----IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V 268 (364)
T KOG0290|consen 193 ----IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKV 268 (364)
T ss_pred ----EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceE
Confidence 58999999999998778899999999999999999764333333322 45788899988 56677776654 469
Q ss_pred EEEECCCCcee-eEeeccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEE-eecCcCCCCCCCeeEEEE
Q 016458 275 RLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVL-NLGSLQNSHEGRITCLGL 351 (389)
Q Consensus 275 ~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~ 351 (389)
.+.|++..... ..+ .+|...|+.++|.|.. ..|++++.|..+.+||+....... .-..+.-.-.+.|+.+.|
T Consensus 269 ~iLDiR~P~tpva~L-----~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~W 343 (364)
T KOG0290|consen 269 VILDIRVPCTPVARL-----RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQW 343 (364)
T ss_pred EEEEecCCCcceehh-----hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeee
Confidence 99999875433 333 3344469999999964 589999999999999997543200 000001235678999999
Q ss_pred CC-CCCeEEeeeCCCeeEE
Q 016458 352 SA-DGSALCTGSWDTNLKV 369 (389)
Q Consensus 352 ~~-~~~~l~~~~~dg~i~i 369 (389)
++ .+..++.+.. +.+.|
T Consensus 344 s~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 344 SSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred cccCCCEEEEEec-CeeeE
Confidence 96 4556666554 34433
No 194
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=2e-20 Score=149.36 Aligned_cols=262 Identities=16% Similarity=0.235 Sum_probs=194.1
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC--------C--------CCeeEEEeeCCCcEEEEEECC
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--------T--------SQKTHAIKLPCAWVMTCAFSP 119 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~--------~--------~~~~~~~~~~~~~v~~~~~~~ 119 (389)
.......|..|..+|+++.|+|+|+.||+|+.+|.|.+|... + ......+.+|...|..++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 456777899999999999999999999999999999999765 2 122345567888999999999
Q ss_pred CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec-
Q 016458 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG- 198 (389)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~- 198 (389)
++.++++++.|..+++||+..+. ....+..|...+..++|.|-+ +++++-+.|...+.+.+.....+....
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~-------l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~ 205 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQ-------LLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGL 205 (434)
T ss_pred CCceeeeeeccceEEEEEeccce-------eEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeee
Confidence 99999999999999999999876 788889999999999999987 789998888877777766544333221
Q ss_pred ----CcccC-------------CCCCCeeEEEeeCCCCcEEEEeeC----CC-----ceEEEeCCCCCcceeEEeeeccc
Q 016458 199 ----GEFQS-------------GHTADVLSVSISGSNSRMFVSGSC----DS-----TARLWDTRVASRAVRTFHGHEGD 252 (389)
Q Consensus 199 ----~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~ 252 (389)
..... .-......++|+| ++.++++... ++ ..++|+-....++...+.....+
T Consensus 206 ~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~ 284 (434)
T KOG1009|consen 206 DIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKP 284 (434)
T ss_pred eEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcc
Confidence 00000 1112345677888 7778876432 22 33566555445666666666666
Q ss_pred eEEEEEec------------------CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458 253 VNTVKFFP------------------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (389)
Q Consensus 253 i~~~~~~~------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (389)
...+.|+| -+-.++.++. ..|++||..+..++......+- ..|+.++|++||.+++.
T Consensus 285 ~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy----~~iTDiaws~dg~~l~v 359 (434)
T KOG1009|consen 285 ALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHY----SAITDIAWSDDGSVLLV 359 (434)
T ss_pred eEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeee----eeecceeecCCCcEEEE
Confidence 66666665 1223455554 5899999988777776654333 36999999999999999
Q ss_pred EecCCcEEEEEcccceE
Q 016458 315 GYSNGDCYVWDTLLAKV 331 (389)
Q Consensus 315 ~~~dg~i~i~d~~~~~~ 331 (389)
.+.||...+.-+...+.
T Consensus 360 SS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 360 SSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eccCCceEEEEEcchhc
Confidence 99999888777665443
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.5e-20 Score=147.76 Aligned_cols=196 Identities=21% Similarity=0.280 Sum_probs=153.0
Q ss_pred EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc
Q 016458 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241 (389)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 241 (389)
.+++|+.+| ..+++++.||++|+|+..+...+... ..|...|.++.|+| ++++|++-+.| ..++|+.+++ .
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e-----~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g-~ 218 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEE-----IAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTG-A 218 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhh-----HhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccC-c
Confidence 778999987 78999999999999998877776666 68999999999999 99999999999 9999999988 4
Q ss_pred ceeEEee--eccceEEEEEecCC---CE--EEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458 242 AVRTFHG--HEGDVNTVKFFPDG---NR--FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (389)
Q Consensus 242 ~~~~~~~--~~~~i~~~~~~~~~---~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (389)
.+....+ .+.....+.|+.++ .+ ++....-+.|+.||+.....-..+...........|++++.+++|++++.
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 4444432 23346677888766 22 23333456677777654433211111111122224999999999999999
Q ss_pred EecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 315 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 315 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
|+.||.|-|++..+.+.+...+ +.|...|+.+.|+||.+++++.+.|....|
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk---~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK---EAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh---hhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 9999999999999888888776 799999999999999999999999998888
No 196
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.6e-19 Score=153.31 Aligned_cols=313 Identities=15% Similarity=0.212 Sum_probs=221.4
Q ss_pred CcccCCCcceeeeecccccCcEEEEEEcCCC---CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC----CC
Q 016458 49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSER---NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP----TG 121 (389)
Q Consensus 49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~---~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~----~~ 121 (389)
...++..+..+.+.|.+|..+++.+.+.|.. .++++++.||.|++||...+..+.++..+.. +..+.+.| ..
T Consensus 39 V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s 117 (792)
T KOG1963|consen 39 VKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP-VHALVYKPAQADIS 117 (792)
T ss_pred EEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-eeEEEechhHhCcc
Confidence 4456667788999999999999999999854 3678999999999999999999988876543 44433322 11
Q ss_pred cEEEEecCCCc------------EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 122 QSVACGGLDSV------------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 122 ~~l~~~~~dg~------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
..+..+..+.. ++-+.+.+.. .........|.. -.++.+++.+ .+.....+..+.+|+..
T Consensus 118 ~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~-----~~~~d~~~~~~~-~~~I~~~~~g--e~~~i~~~~~~~~~~v~ 189 (792)
T KOG1963|consen 118 ANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD-----SAKGDFLKEHQE-PKSIVDNNSG--EFKGIVHMCKIHIYFVP 189 (792)
T ss_pred ceeEeecccceeeeecccccccceeeeEeeecc-----ccchhhhhhhcC-CccEEEcCCc--eEEEEEEeeeEEEEEec
Confidence 11212222211 1111111100 001111222222 4567777765 35555667789999988
Q ss_pred CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC---CCcceeEEeeeccceEEEEEecCCCEEE
Q 016458 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---ASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (389)
.+. ...........|.-.+++.+++| +++++++|..||.|.+|.--. .......+.-|...|.+++|+++|.+|+
T Consensus 190 ~~~-~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~Ll 267 (792)
T KOG1963|consen 190 KHT-KHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLL 267 (792)
T ss_pred ccc-eeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEe
Confidence 866 33333333356777789999999 999999999999999996432 2245667788999999999999999999
Q ss_pred EEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCC-----
Q 016458 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS----- 341 (389)
Q Consensus 267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----- 341 (389)
+|+..|.+.+|.+.+++ +.+.+..+ ++|..+.++||+.+.+....|+.|.+....+.....++..+...
T Consensus 268 SGG~E~VLv~Wq~~T~~--kqfLPRLg----s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k 341 (792)
T KOG1963|consen 268 SGGREGVLVLWQLETGK--KQFLPRLG----SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK 341 (792)
T ss_pred ecccceEEEEEeecCCC--cccccccC----CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence 99999999999999987 33333222 25999999999999999999999999988766555554332222
Q ss_pred --CCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 342 --HEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 342 --~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
..+-.+.++++|.-+.++-.+..|.|.+ ||+-+.+..
T Consensus 342 ~~~~~l~t~~~idpr~~~~vln~~~g~vQ~----ydl~td~~i 380 (792)
T KOG1963|consen 342 TRPQSLTTGVSIDPRTNSLVLNGHPGHVQF----YDLYTDSTI 380 (792)
T ss_pred ccccccceeEEEcCCCCceeecCCCceEEE----Eecccccee
Confidence 3455788899997778888999999999 988776543
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=5.3e-18 Score=144.38 Aligned_cols=262 Identities=11% Similarity=0.122 Sum_probs=168.2
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEe-cCCcEEEEeCCC-CCee--EEEeeCCCcEEEEEECCCCcEEEEecC-CC
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSAS-QDGRLIVWNALT-SQKT--HAIKLPCAWVMTCAFSPTGQSVACGGL-DS 131 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~-~dg~v~iw~~~~-~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg 131 (389)
+....++. +.+....++++|++++|++++ .++.|.+|++.. +... .... .......++|+|+++++++++. ++
T Consensus 25 l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~ 102 (330)
T PRK11028 25 LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNAN 102 (330)
T ss_pred eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCC
Confidence 34555554 345677899999999887664 578899999863 3322 2222 2235678999999999888764 88
Q ss_pred cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEe-cCcccCCCCCCee
Q 016458 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQSGHTADVL 210 (389)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~ 210 (389)
.|.+|+++..... ........ +......++++|++..++++...++.|.+||+.+...+... .............
T Consensus 103 ~v~v~~~~~~g~~---~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~ 178 (330)
T PRK11028 103 CVSVSPLDKDGIP---VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR 178 (330)
T ss_pred eEEEEEECCCCCC---CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence 9999999742211 11122222 22345678899998555566677899999999764322110 0000011234567
Q ss_pred EEEeeCCCCcEEEEeeC-CCceEEEeCCCCC---cceeEEeeec------cceEEEEEecCCCEEEEEe-cCCeEEEEEC
Q 016458 211 SVSISGSNSRMFVSGSC-DSTARLWDTRVAS---RAVRTFHGHE------GDVNTVKFFPDGNRFGTGS-DDGTCRLFDI 279 (389)
Q Consensus 211 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~---~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~ 279 (389)
.+.|+| ++++++++.. ++.|.+||++... ..+..+..+. .....+.++|++++++++. .++.|.+|++
T Consensus 179 ~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 179 HMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred eEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 899999 7777766665 8999999997421 1222222111 1233688999999999885 4789999998
Q ss_pred CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcc
Q 016458 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL 327 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 327 (389)
........+....... .....+.++|+|++|++++. ++.|.+|++.
T Consensus 258 ~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 258 SEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 6543222221111110 12567899999999998775 8899999875
No 198
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.86 E-value=2.1e-19 Score=148.75 Aligned_cols=277 Identities=21% Similarity=0.286 Sum_probs=189.3
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeE----EEeeCCCcEEEEEE-----CCCCcEEEEecCCCcEEEEeCC
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH----AIKLPCAWVMTCAF-----SPTGQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~----~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~vw~~~ 139 (389)
.+....++-.|++|+-.-. ..+.+|+...+..+. ..........|-+| .|.+--++.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3445555556667665543 368888876432221 11111222334444 3466678888888999998876
Q ss_pred CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
.... .........-.+..|+|+.|.|.++..++.+-.+|.+++||.... ..... .+....+ .+
T Consensus 204 ~~~~---sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------~~~t~--p~~~~~k-~~ 266 (636)
T KOG2394|consen 204 NFEV---SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------CGATA--PSYQALK-DG 266 (636)
T ss_pred hhHH---HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------ccCCC--CcccccC-CC
Confidence 5210 000011111234789999999999899999999999999997211 01111 1111112 33
Q ss_pred cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
..+.... |--.....++..+.--.+.|+.++|+|||++||+.+.||.++|||..+.+.+..+....+ .
T Consensus 267 ~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-----G 334 (636)
T KOG2394|consen 267 DQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-----G 334 (636)
T ss_pred CeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-----c
Confidence 3443322 211122245556665667899999999999999999999999999998877766655444 3
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC-------------------------
Q 016458 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD------------------------- 354 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------- 354 (389)
..|++|||||+||++|++|..|.||.+..++.+..- ++|.+.|+.++|+|-
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG----qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~ 410 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG----QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFE 410 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceEEEec----cccccceeeEeecccccccccccccccccccccchhcccc
Confidence 899999999999999999999999999999999887 899999999999830
Q ss_pred ----------C-------------CeEEeeeCCCeeEEeecceecccCcccC
Q 016458 355 ----------G-------------SALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 355 ----------~-------------~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
+ -.+.+.+.|-.+.+ ||+.+..+.+
T Consensus 411 ~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL----WDlteD~L~~ 458 (636)
T KOG2394|consen 411 IRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL----WDLTEDVLVP 458 (636)
T ss_pred cccCCCCCcCCCcccccccccceEEEeecccccceEEE----Eecchhhccc
Confidence 1 14677888999999 9999887765
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=1.9e-19 Score=157.66 Aligned_cols=236 Identities=15% Similarity=0.169 Sum_probs=163.7
Q ss_pred CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---CcEEEEeCCCCCCCCCCCcceeeecccccceEEE
Q 016458 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC 164 (389)
Q Consensus 88 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 164 (389)
+..|.+||..... ...+..+...+...+|+|+|+.|+.++.+ ..|++||+.++.. .....+.+| ...+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-----~~l~~~~g~---~~~~ 253 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-----KVVASFRGH---NGAP 253 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-----EEEecCCCc---cCce
Confidence 4689999976544 55566677789999999999999887643 4699999976431 122223333 3467
Q ss_pred EEeeCCCcEEEEeeCCCeEEE--EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEeCCCCCc
Q 016458 165 QYVPDEDTHLITSSGDQTCVL--WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASR 241 (389)
Q Consensus 165 ~~~~~~~~~l~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~ 241 (389)
+|+|++..++++.+.+|.+.+ ||+.++.... + ..+...+.+..|+| +++.| +++..+|...+|+++....
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-l-----t~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-L-----TSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-e-----ccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 999998544445556776555 4666665433 3 34556678899999 56554 4555678888988765433
Q ss_pred ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcE
Q 016458 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC 321 (389)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (389)
....+ .+.. ....|+|+|++|+..+.++ +.+||+.++........ . . .....|+|+|++|+.++.+|..
T Consensus 327 ~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~-~-----~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 327 GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-F-L-----DESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-C-C-----CCCceECCCCCEEEEEEcCCCc
Confidence 33333 3333 4578999999998888765 55699988765432211 1 1 3457899999999999999988
Q ss_pred EEEEcc--cceEEEeecCcCCCCCCCeeEEEECCC
Q 016458 322 YVWDTL--LAKVVLNLGSLQNSHEGRITCLGLSAD 354 (389)
Q Consensus 322 ~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (389)
.+|++. ++.....+ ..|.+.+...+|+|-
T Consensus 396 ~~l~~~~~~G~~~~~l----~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 396 KVLQLVSADGRFKARL----PGSDGQVKFPAWSPY 426 (429)
T ss_pred eEEEEEECCCCceEEc----cCCCCCCCCcccCCC
Confidence 888753 57777777 677888999999984
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-18 Score=136.27 Aligned_cols=288 Identities=17% Similarity=0.220 Sum_probs=189.9
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCCC-cEEEEecCCCcEEEEeCCCCCCCCC
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDG 146 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (389)
.+..++|++.-..+|++..|-.|++||-.. .....++ .....|+|++|-|.+ +.|++|+.. -|.+|..+.......
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence 578899999877889999999999999766 3333343 334679999999954 566667654 589998876432211
Q ss_pred C-------CcceeeecccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458 147 N-------LPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (389)
Q Consensus 147 ~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (389)
. ........+| .+|+++.|.+|| ..+++++ .|..|.|||..++..+... ....+.+.-+.|+| +
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~-----~~glgg~slLkwSP-d 249 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLI-----PKGLGGFSLLKWSP-D 249 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccc-----ccCCCceeeEEEcC-C
Confidence 1 0111223344 789999999998 4566555 5789999999999887765 35567789999999 8
Q ss_pred CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee---------
Q 016458 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY--------- 289 (389)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------- 289 (389)
+++|++++.|+..++|+........+-.. -.+.|...+|+|+|.+|+..+. |.-++|.+........+.
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~l 327 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVL 327 (445)
T ss_pred CCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeee
Confidence 88999999999999997665433333333 3458999999999998765543 334455443211111110
Q ss_pred ------c----cCCCCCCCCeeEEEeCCCCCEEEEEecCC--------cEEEEEcccceEEEeecCcCCCCCCCeeEEEE
Q 016458 290 ------Q----QHGENEIPHVTSIAFSISGRLLFAGYSNG--------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 351 (389)
Q Consensus 290 ------~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 351 (389)
. ....-....+.+++|.|.|.+|++....+ .|.+||.+....+.-...- ........-++|
T Consensus 328 liaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg-~i~ge~P~~IsF 406 (445)
T KOG2139|consen 328 LIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCG-MIGGEYPAYISF 406 (445)
T ss_pred eeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecc-cccCCCCceEEe
Confidence 0 00011133578999999999999976544 3667887654443322110 011122455666
Q ss_pred CC---CCCeEEeeeCCCeeEE
Q 016458 352 SA---DGSALCTGSWDTNLKV 369 (389)
Q Consensus 352 ~~---~~~~l~~~~~dg~i~i 369 (389)
+| ++.+|..+=+.|.+.-
T Consensus 407 ~pl~n~g~lLsiaWsTGriq~ 427 (445)
T KOG2139|consen 407 GPLKNEGRLLSIAWSTGRIQR 427 (445)
T ss_pred eecccCCcEEEEEeccCceEe
Confidence 65 5777777777777766
No 201
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=7.6e-18 Score=130.78 Aligned_cols=280 Identities=14% Similarity=0.170 Sum_probs=185.9
Q ss_pred EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCC------CcEEEEeCCCCC
Q 016458 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLD------SVCSIFNLNSPT 142 (389)
Q Consensus 70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d------g~i~vw~~~~~~ 142 (389)
...++|+.|...+++|..+| .+||+.+.-+.....+.+.+.+.-+...-..++|+ +|+.+ ..+.|||=....
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 44599999999999998887 89999877554433333333222222222344444 34333 469999932211
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-CCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (389)
....+ ....+|.++.+.++ .+++. ..+.|.+|... +.+.+..+.. ...+..+.+++-.. +..+
T Consensus 87 -------~i~el-~f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et---~~NPkGlC~~~~~~-~k~~ 150 (346)
T KOG2111|consen 87 -------CIIEL-SFNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIET---RSNPKGLCSLCPTS-NKSL 150 (346)
T ss_pred -------EEEEE-EeccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeec---ccCCCceEeecCCC-CceE
Confidence 22222 35678999999874 24443 45789999988 4455555532 12233344444443 3344
Q ss_pred EEE-eeCCCceEEEeCCCCCc-ceeEEeeeccceEEEEEecCCCEEEEEecCCe-EEEEECCCCceeeEeeccCCCCCCC
Q 016458 222 FVS-GSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIP 298 (389)
Q Consensus 222 l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~ 298 (389)
|+. |..-|.|.|-|+..... ....+.+|.+.|.|++.+-+|..+|+++..|+ |+|||..++..+..+...... .
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~---A 227 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR---A 227 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch---h
Confidence 443 55679999999987633 35788899999999999999999999999997 899999999999998775433 3
Q ss_pred CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEe-----------ecCcC---------CCCCCCeeEEEECCCCCeE
Q 016458 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN-----------LGSLQ---------NSHEGRITCLGLSADGSAL 358 (389)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~~~---------~~~~~~v~~~~~~~~~~~l 358 (389)
.|.+++|||+..+|++++..|+++||.+........ +..+. .-..++..-++|-.+.+.+
T Consensus 228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsv 307 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTV 307 (346)
T ss_pred eEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeE
Confidence 499999999999999999999999998865321111 10000 0112345556676665667
Q ss_pred EeeeCCCeeEE
Q 016458 359 CTGSWDTNLKV 369 (389)
Q Consensus 359 ~~~~~dg~i~i 369 (389)
+..+.||..+=
T Consensus 308 i~i~~Dgsy~k 318 (346)
T KOG2111|consen 308 IAICADGSYYK 318 (346)
T ss_pred EEEEeCCcEEE
Confidence 77777776543
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=3.5e-18 Score=135.22 Aligned_cols=238 Identities=13% Similarity=0.142 Sum_probs=178.6
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC--CeEEEEe
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWD 187 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd 187 (389)
..+..+.|+.+...|..|+.|| .++|+.+... ...........|.-+-|+.. +++..+.+ ..+++++
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~-------k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFE-------KCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVH 74 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchH-------HhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEE
Confidence 3466777999999999999998 4788876522 11111122334555666653 44444433 4699999
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---eccceEEEEEecCCCE
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNR 264 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~ 264 (389)
+..+..+..+ .....|.++.++. +.|+++-.+ .|+|||+++. +.+.++.. +...+.++++++.+.+
T Consensus 75 ~Kk~~~ICe~------~fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~y 143 (391)
T KOG2110|consen 75 FKKKTTICEI------FFPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCY 143 (391)
T ss_pred cccCceEEEE------ecCCceEEEEEcc---ceEEEEEcc-cEEEEecccc-eeehhhhccCCCccceEeeccCCCCce
Confidence 9988888776 5667899999863 445555544 4999999988 66665543 4445666666667778
Q ss_pred EEEEe--cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc-EEEEEcccceEEEeecCcCCC
Q 016458 265 FGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-CYVWDTLLAKVVLNLGSLQNS 341 (389)
Q Consensus 265 l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~ 341 (389)
++.-+ ..|.|.+||+.+-+....+..+.+ ++.+++|+++|.+||+++..|+ ||||.+.+|+.+.+++.- .
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~-----~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG--~ 216 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKG-----PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG--T 216 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCC-----ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC--c
Confidence 88654 568999999999988888876555 4999999999999999999996 689999999999999642 2
Q ss_pred CCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 342 HEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 342 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
-...|.+++|+|++++|++.|..++|.| ++++...
T Consensus 217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHi----FKL~~~~ 251 (391)
T KOG2110|consen 217 YPVSIYSLSFSPDSQFLAASSNTETVHI----FKLEKVS 251 (391)
T ss_pred eeeEEEEEEECCCCCeEEEecCCCeEEE----EEecccc
Confidence 2457899999999999999999999999 8887654
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.85 E-value=5.4e-20 Score=152.19 Aligned_cols=208 Identities=20% Similarity=0.348 Sum_probs=169.0
Q ss_pred CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
..|+.++.||.+.+.+ ..++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-... +..++.....
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--------LRStl~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--------LRSTVVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--------HHHHHhhcCc
Confidence 4788889999999988 667888889999999999999999999999999999999997652 3444555678
Q ss_pred ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (389)
+|.|++|.|+..+.+++.+ +.+.|=.+.....+... ..|.+-|.++.|++ ..+++++|++|-..++||..
T Consensus 147 ~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~W-----kAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-- 216 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRW-----RAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-- 216 (737)
T ss_pred eeEEEEECCCCCceEEecC--CeEEEeecccccceeEE-----eccCcEEEEeecCc-cccceeecCCceeEEeeccc--
Confidence 9999999999877777655 45666666666666666 78999999999999 88999999999999999976
Q ss_pred CcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (389)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (389)
+..+..-..|+.+|++++|.|+ +.++.++.+ ++++= ....+.|..++||+||..+++|+..|
T Consensus 217 G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~----------------~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 217 GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFS----------------SPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred CcccccCChhccceeeeeeccc-cceeeeeee-eeeec----------------CCCccceEEEEEcCCCceeeccccCc
Confidence 4677777889999999999999 566666543 44411 11223489999999999999999999
Q ss_pred cEEEE
Q 016458 320 DCYVW 324 (389)
Q Consensus 320 ~i~i~ 324 (389)
.+.+-
T Consensus 279 ~v~~A 283 (737)
T KOG1524|consen 279 QLIVA 283 (737)
T ss_pred eEEEe
Confidence 87653
No 204
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.8e-19 Score=142.54 Aligned_cols=265 Identities=16% Similarity=0.179 Sum_probs=190.3
Q ss_pred EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeE
Q 016458 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (389)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 183 (389)
-+..|.+.|+++.|+.++++|++|+.|..+++|+++..-......++...-..|...|.|++|...+ ..+++|+.+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCccee
Confidence 3457889999999999999999999999999999876332212222333334567899999999875 789999999999
Q ss_pred EEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEec-
Q 016458 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP- 260 (389)
Q Consensus 184 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~- 260 (389)
..-|+++.+.+..+.. ....+.|+.+..+| -.+.|++.+.++.|.+||.+....+...+. ........+.|+|
T Consensus 130 I~HDiEt~qsi~V~~~---~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANE---NNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred Eeeecccceeeeeecc---cCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 9999999998888732 23445899999999 578899999999999999997743443332 2344578899999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceeeE-eeccCCC-CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE-EEeecC
Q 016458 261 DGNRFGTGSDDGTCRLFDIRTGHQLQV-YYQQHGE-NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGS 337 (389)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~ 337 (389)
...+|++.+..+-+-+||.+....... .....+. .......++.|+|+|+.+.+--....-.+||+.+..+ +..+..
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 556788889999999999986543211 1111111 1111246788999999888776655667788776333 333310
Q ss_pred cC--CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 338 LQ--NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 338 ~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
-. ......+.+++|..|.. +++|+.+-.|++ |.+..
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~----WklP~ 323 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHI----WKLPR 323 (609)
T ss_pred CCCcceeeeeeeeeeeeccee-eeccCcccceEE----EecCC
Confidence 00 01123577888876654 899999999999 99864
No 205
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=7.5e-19 Score=136.97 Aligned_cols=281 Identities=16% Similarity=0.172 Sum_probs=197.7
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcc
Q 016458 72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPV 150 (389)
Q Consensus 72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~ 150 (389)
-..|||+|+++|+++.- .+.|-|..+.+..+.+.. -..|..+.|..+.-+++++ ..++.|.+|++..+. .
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-------w 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-------W 83 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecce-------e
Confidence 35799999999999876 788888877665544433 2457888999888777665 568899999998754 4
Q ss_pred eeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC---
Q 016458 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--- 227 (389)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (389)
...+......+..++|+|+|..+|.+...+-.|.+|.+.+......- -....+..++|+| ++++.+..+.
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~------~pK~~~kg~~f~~-dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP------HPKTNVKGYAFHP-DGQFCAILSRRDC 156 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec------ccccCceeEEECC-CCceeeeeecccH
Confidence 55566667889999999999888888889999999999987765543 2333457778887 6666555432
Q ss_pred ---------------------------------CCceEEEeCCCCCcceeEEeee-ccceEEEEEecCCCEEEEEecCCe
Q 016458 228 ---------------------------------DSTARLWDTRVASRAVRTFHGH-EGDVNTVKFFPDGNRFGTGSDDGT 273 (389)
Q Consensus 228 ---------------------------------dg~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~ 273 (389)
+..+.+||.--. ...+.-| .-.+..++|+|.+++|++|+.|+.
T Consensus 157 kdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le---ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~ 233 (447)
T KOG4497|consen 157 KDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM 233 (447)
T ss_pred HHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh---heeeeeeeccceeEEEeccccceEEeeccchh
Confidence 223445553211 1111112 246888999999999999999999
Q ss_pred EEEEECCCCceeeEee-------------------------------------------------------------ccC
Q 016458 274 CRLFDIRTGHQLQVYY-------------------------------------------------------------QQH 292 (389)
Q Consensus 274 i~i~d~~~~~~~~~~~-------------------------------------------------------------~~~ 292 (389)
+++.+--+.+....+. ...
T Consensus 234 lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD 313 (447)
T KOG4497|consen 234 LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD 313 (447)
T ss_pred hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC
Confidence 8886532221111110 000
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEecC--CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEe
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYSN--GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVN 370 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 370 (389)
.++....+.-++|++|..|+++-.+. +.+-+||++..+....+ ....+|....|+|....|+.+.....+++
T Consensus 314 ~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-----iQk~piraf~WdP~~prL~vctg~srLY~- 387 (447)
T KOG4497|consen 314 FPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-----IQKHPIRAFEWDPGRPRLVVCTGKSRLYF- 387 (447)
T ss_pred CCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-----hhccceeEEEeCCCCceEEEEcCCceEEE-
Confidence 01222346789999999999987543 57999999887776655 34568999999999888888887777888
Q ss_pred ecceecccCc
Q 016458 371 LGFWRVQEGA 380 (389)
Q Consensus 371 ~~~W~~~~~~ 380 (389)
|...-..
T Consensus 388 ---W~psg~~ 394 (447)
T KOG4497|consen 388 ---WAPSGPR 394 (447)
T ss_pred ---EcCCCce
Confidence 9876543
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.84 E-value=1e-16 Score=135.95 Aligned_cols=286 Identities=16% Similarity=0.133 Sum_probs=185.9
Q ss_pred EEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccce
Q 016458 82 IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV 161 (389)
Q Consensus 82 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v 161 (389)
+++-..+|.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+ ....+... ...
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------~v~~i~~G-~~~ 80 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-------VVATIKVG-GNP 80 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-------EEEEEE-S-SEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-------EEEEEecC-CCc
Confidence 3456678999999999999999998766555567899999999999999999999999855 55555543 346
Q ss_pred EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC--CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (389)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (389)
..++++++|...+++...++.+.++|.++.+.+..++..... .....+..+..+|....++++--..+.|.+.|....
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 789999998544455567999999999999988887432111 134567788888844445555555688988898776
Q ss_pred CcceeEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCC------------------------
Q 016458 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGE------------------------ 294 (389)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~------------------------ 294 (389)
..................|+|++++++++ ..++.|-++|..+++....+......
T Consensus 161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY 240 (369)
T ss_dssp SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence 33333343345567889999999987665 46678999998877655433211000
Q ss_pred --------------------------CCCCCeeEEEeCCCCCEEEEE----ecCCcEEEEEcccceEEEeecCcCCCCCC
Q 016458 295 --------------------------NEIPHVTSIAFSISGRLLFAG----YSNGDCYVWDTLLAKVVLNLGSLQNSHEG 344 (389)
Q Consensus 295 --------------------------~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (389)
....+ ..+..+|+++++.+. ...+.|.++|..+.+....+. .....
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~---~~~~~ 316 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT---PGPGK 316 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH---HHHT-
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe---ccCCC
Confidence 00111 345668999999987 445799999999998887773 22223
Q ss_pred CeeEEEECCCCCeEEeeeCCC--eeEEeecceecccCcccC
Q 016458 345 RITCLGLSADGSALCTGSWDT--NLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 345 ~v~~~~~~~~~~~l~~~~~dg--~i~i~~~~W~~~~~~~~~ 383 (389)
.+..+.|++||+.+..+..++ .|.| +|..+.++..
T Consensus 317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v----~D~~Tl~~~~ 353 (369)
T PF02239_consen 317 RVVHMEFNPDGKEVWVSVWDGNGAIVV----YDAKTLKEKK 353 (369)
T ss_dssp -EEEEEE-TTSSEEEEEEE--TTEEEE----EETTTTEEEE
T ss_pred cEeccEECCCCCEEEEEEecCCCEEEE----EECCCcEEEE
Confidence 589999999999877666554 5999 9999887654
No 207
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=1.2e-19 Score=153.13 Aligned_cols=242 Identities=16% Similarity=0.238 Sum_probs=181.5
Q ss_pred CCeEEE--EecCCcEEEEeCCCCCeeE--EEe--eCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcce
Q 016458 79 RNRIVS--ASQDGRLIVWNALTSQKTH--AIK--LPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS 151 (389)
Q Consensus 79 ~~~l~~--~~~dg~v~iw~~~~~~~~~--~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 151 (389)
..++|+ ++..|.|-||++.....+- .+. .....|+.+.|.| |...|++++.||.|++|.+..+..........
T Consensus 591 ~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe 670 (1012)
T KOG1445|consen 591 NKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE 670 (1012)
T ss_pred cceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc
Confidence 344443 4567899999987643321 111 2345699999999 78899999999999999999887777777788
Q ss_pred eeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCce
Q 016458 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 231 (389)
Q Consensus 152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 231 (389)
..+..|...|+++.|+|--...|++++.|-+|++||+.++.....+ .+|.+.|..++|+| +++.+++.+.||+|
T Consensus 671 ~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-----~gHtdqIf~~AWSp-dGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 671 KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-----VGHTDQIFGIAWSP-DGRRIATVCKDGTL 744 (1012)
T ss_pred eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-----ccCcCceeEEEECC-CCcceeeeecCceE
Confidence 8999999999999999987788999999999999999999988888 89999999999999 99999999999999
Q ss_pred EEEeCCCCCcceeEEeeec-cceEEEEEecCCCEEEEEecCC----eEEEEECCCCc--eeeEeeccCCCCCCCCeeEEE
Q 016458 232 RLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDG----TCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIA 304 (389)
Q Consensus 232 ~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~ 304 (389)
++|+.++..+++..-.+.. ..--.+.|--+|+++++.+.|. .|.+||..+-. .+.+....... .+.--.
T Consensus 745 rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap----s~LvP~ 820 (1012)
T KOG1445|consen 745 RVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP----SPLVPH 820 (1012)
T ss_pred EEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC----cccccc
Confidence 9999998866665544322 2234577878999998888664 58888876532 22222111110 011122
Q ss_pred eCCCCC-EEEEEecCCcEEEEEcccce
Q 016458 305 FSISGR-LLFAGYSNGDCYVWDTLLAK 330 (389)
Q Consensus 305 ~~~~~~-~l~~~~~dg~i~i~d~~~~~ 330 (389)
+.+|.+ ++++|-.|..|++|.+-...
T Consensus 821 YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 821 YDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ccCCCceEEEecCCCceEEEEEecCCC
Confidence 445555 56677788899999875443
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.2e-19 Score=144.39 Aligned_cols=199 Identities=21% Similarity=0.252 Sum_probs=152.5
Q ss_pred EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe
Q 016458 113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192 (389)
Q Consensus 113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 192 (389)
.+++|+++|..+++|+.||.+|||++.+.. .......|.+.|.++.|+||+ ..|++-+.| ..+||+..++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-------t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-------TILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-------hhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCc
Confidence 789999999999999999999999976633 455667899999999999998 789999999 99999999996
Q ss_pred eEEEecCcccCCCCCCeeEEEeeCCCC---c--EEEEeeCCCceEEEeCCCCCc----ceeEEeeeccceEEEEEecCCC
Q 016458 193 RTSVFGGEFQSGHTADVLSVSISGSNS---R--MFVSGSCDSTARLWDTRVASR----AVRTFHGHEGDVNTVKFFPDGN 263 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~~ 263 (389)
.+....+ .........+.|+. ++ . +++.....+.|+.||+..... ...+.......|.+++.+++|+
T Consensus 219 ~~a~~t~---~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk 294 (398)
T KOG0771|consen 219 ALARKTP---FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK 294 (398)
T ss_pred hhhhcCC---cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc
Confidence 6665532 23334455666665 33 2 223333456677766654322 2222233345799999999999
Q ss_pred EEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 264 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 264 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
+++.|+.||.|.+++..+.+.....+..|.. .|+.+.|+|+.++++..+.+....+..+.-
T Consensus 295 f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~----~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 295 FLALGTMDGSVAIYDAKSLQRLQYVKEAHLG----FVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeccCCcEEEEEeceeeeeEeehhhhee----eeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999999988877776654433 699999999999999999998888887654
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.8e-18 Score=140.65 Aligned_cols=277 Identities=13% Similarity=0.173 Sum_probs=205.0
Q ss_pred cccCcEEEEEEcCCCCeE-EEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC
Q 016458 65 GHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD 143 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 143 (389)
+|...-+.|..+|||+|+ |+|..--.|++||+........-......|...-.+.|-..++.-..|..|.+-.-....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h- 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH- 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee-
Confidence 466778899999999975 677788899999998776655555555666666667666666666677777664433210
Q ss_pred CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE
Q 016458 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223 (389)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (389)
.... -...-.+++++.-. .-|+.++....|+-++++.|..+..+ ....+.++++.+++ ...+|+
T Consensus 128 --------y~~R-IP~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL~P~-----~~~~~~lN~v~in~-~hgLla 191 (703)
T KOG2321|consen 128 --------YRTR-IPKFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFLNPF-----ETDSGELNVVSINE-EHGLLA 191 (703)
T ss_pred --------eeee-cCcCCccccccCCC-ccEEEeecCcceEEEEcccccccccc-----ccccccceeeeecC-ccceEE
Confidence 0000 11223445555443 23666666778999999999998888 56668899999998 778999
Q ss_pred EeeCCCceEEEeCCCCCcceeEEe------eecc-----ceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458 224 SGSCDSTARLWDTRVASRAVRTFH------GHEG-----DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (389)
Q Consensus 224 ~~~~dg~i~i~d~~~~~~~~~~~~------~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (389)
+|+.+|.|..||.+.. ..+..+. .|.+ .|+++.|+.+|-.+++|+.+|.+.|||++..+++..-....
T Consensus 192 ~Gt~~g~VEfwDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred ecccCceEEEecchhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC
Confidence 9999999999999976 3333332 2323 39999999999999999999999999999988876654433
Q ss_pred CCCCCCCeeEEEeCCC--CCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 293 GENEIPHVTSIAFSIS--GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
..+|..+.|.+. ++.+++. ....++|||-.+|+....+. ....+..+|+-|++.++++|-.++.+..
T Consensus 271 ----e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-----pt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 271 ----ELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-----PTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ----ccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-----ccCCcCceeeecCCceEEEecCCCccee
Confidence 236899999775 3455544 45689999999999998873 3345999999999999999999888776
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=7.9e-18 Score=152.27 Aligned_cols=275 Identities=16% Similarity=0.150 Sum_probs=189.6
Q ss_pred CCCeeEEEeeCCCcEEEEEECCCC-cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEE
Q 016458 98 TSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176 (389)
Q Consensus 98 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 176 (389)
.|..+..+..|...+..++.++.. .++++|+.||+|++|+...-...........++....+.+.++...+.+ ..++.
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av 1115 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAV 1115 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEE
Confidence 466777788888888888887755 9999999999999999987443333334444555567889999999987 67888
Q ss_pred eeCCCeEEEEeCCCCeeEEE--ecCccc-CCCCCCeeEE-EeeCCCCc-EEEEeeCCCceEEEeCCCCCcceeE--Eeee
Q 016458 177 SSGDQTCVLWDITTGLRTSV--FGGEFQ-SGHTADVLSV-SISGSNSR-MFVSGSCDSTARLWDTRVASRAVRT--FHGH 249 (389)
Q Consensus 177 ~~~dg~i~iwd~~~~~~~~~--~~~~~~-~~~~~~v~~~-~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~ 249 (389)
++.||.|++.++........ ...... ....+.+.++ ++...... .++.+..-+.|..||+++. ..... ....
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~-~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR-HDAWRLKNQLR 1194 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-hhHHhhhcCcc
Confidence 89999999999876311111 100000 1122333333 33322333 7888888999999999976 33222 2334
Q ss_pred ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC---CEEEE-Ee-cCCcEEEE
Q 016458 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFA-GY-SNGDCYVW 324 (389)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~-~~-~dg~i~i~ 324 (389)
.+.|++++.+|.++++++|+..|.+.+||++-+.++..+..+.. .+++.+..+|-. ...++ |. ..+.|.+|
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~----~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR----APIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc----CCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 57899999999999999999999999999998888777655433 357777776633 34444 44 57789999
Q ss_pred EcccceEEEeecCcC-----------C----CCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 325 DTLLAKVVLNLGSLQ-----------N----SHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 325 d~~~~~~~~~~~~~~-----------~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
++.+|.....+.... . .+.-.....++..-+.++.+|+.|..|+. ||....+..
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~----wD~~~p~~s 1339 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRK----WDPTRPEIS 1339 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceee----ccCCCcccc
Confidence 999886665553210 0 11112222334445568999999999999 999877655
No 211
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.5e-18 Score=153.20 Aligned_cols=249 Identities=16% Similarity=0.231 Sum_probs=177.8
Q ss_pred CcEEEEEEcC--CCCeEEEEecCCcEEEEeC-CCC----CeeEEEee-------CCCcEEEEEECCCCcEEEEecCCCcE
Q 016458 68 GKVYSLDWTS--ERNRIVSASQDGRLIVWNA-LTS----QKTHAIKL-------PCAWVMTCAFSPTGQSVACGGLDSVC 133 (389)
Q Consensus 68 ~~v~~~~~~~--~~~~l~~~~~dg~v~iw~~-~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i 133 (389)
..|+.+.+-. |..++++|+.||.|+||+- .++ +.+..... ..+.-.-+.|.....+|+++|.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 3588888876 4458999999999999963 222 22222211 11212446787777777777778999
Q ss_pred EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee---EEEecCcccCCCCCC--
Q 016458 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFGGEFQSGHTAD-- 208 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~-- 208 (389)
+|||..... .+.....+....|+++.-+..+.+++++|..||.|++||.+.... +... ..|...
T Consensus 1190 RIWDa~~E~------~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~-----R~h~~~~~ 1258 (1387)
T KOG1517|consen 1190 RIWDAHKEQ------VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY-----REHNDVEP 1258 (1387)
T ss_pred EEEecccce------eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee-----cccCCccc
Confidence 999998633 223333345566777776665568999999999999999887543 3333 456666
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCC-CcceeEEeeec--c-ceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHE--G-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~--~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (389)
|..+.+.+..-..|++|+.+|.|++||+|.. .........|. + ..+++..+++...+++|+. +.|+||++.. +.
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~ 1336 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQ 1336 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hh
Confidence 9999998844456999999999999999983 33333444443 3 5899999999999999998 9999999874 33
Q ss_pred eeEeeccC--CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458 285 LQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 285 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (389)
+..+.... .......+++++|+|-.-++|+|+.|..|.||.....
T Consensus 1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 33333221 1223345899999999999999999999999986544
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=5e-18 Score=131.85 Aligned_cols=246 Identities=15% Similarity=0.190 Sum_probs=182.0
Q ss_pred EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeE
Q 016458 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (389)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 183 (389)
.+..-.++|+|.+|++++..+|++..+..|.||.....+ .+....++..|...|+++.|.|.. +.|++++.|..-
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drna 79 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNA 79 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCC-CceeEccCCCCc
Confidence 344455789999999999999999999999999987643 356788899999999999999997 679999999999
Q ss_pred EEEeCC-CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc---ceeEEeeeccceEEEEEe
Q 016458 184 VLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFF 259 (389)
Q Consensus 184 ~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~ 259 (389)
++|... .++-..++.. ..+....+++.|+| +.+.|++|+....|.+|-++.... ....-.++...|.+++|+
T Consensus 80 yVw~~~~~~~WkptlvL---lRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTLVL---LRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred cccccCCCCeeccceeE---EEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence 999984 4332222211 46788999999999 888999999999999987765421 112334577889999999
Q ss_pred cCCCEEEEEecCCeEEEEECCCC----c----------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458 260 PDGNRFGTGSDDGTCRLFDIRTG----H----------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (389)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~----~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (389)
|++-+|++|+.|+..++|..--. + +...+... .....+.+..+.|+|+|..|+-.+.|+.+.+-|
T Consensus 156 pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E-~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 156 PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE-ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh-hccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 99999999999999999974210 0 00000000 012345799999999999999999999999999
Q ss_pred cccce-EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458 326 TLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (389)
Q Consensus 326 ~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 364 (389)
..... .+..+. ..+ -+..++.|-.+. .++.++.|
T Consensus 235 a~~p~~~v~~~~---~~~-lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 235 AAGPSERVQSVA---TAQ-LPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred cCCCchhccchh---hcc-CCceeeEeecCC-ceeecCCC
Confidence 87654 233331 222 566777776543 34455555
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=6.4e-20 Score=159.28 Aligned_cols=268 Identities=20% Similarity=0.298 Sum_probs=208.8
Q ss_pred cccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC
Q 016458 40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119 (389)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 119 (389)
....+.+...+.|+..+..+...+.||.+.|+.++.+.++-++++++.|..|++|.+.++.++..+.+|.+.|++++|+|
T Consensus 205 Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP 284 (1113)
T KOG0644|consen 205 IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP 284 (1113)
T ss_pred EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (389)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 199 (389)
-. +.+.||++++||.+-.... ..+....+ ....-+.++.|...+ ..+++++.|+.-..|.+.....
T Consensus 285 ~~----sss~dgt~~~wd~r~~~~~--y~prp~~~-~~~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~------ 350 (1113)
T KOG0644|consen 285 RA----SSSDDGTCRIWDARLEPRI--YVPRPLKF-TEKDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAW------ 350 (1113)
T ss_pred cc----cCCCCCceEeccccccccc--cCCCCCCc-ccccceeeeeccccc-cccccccCCcccccchhhHhhh------
Confidence 65 6788999999998821100 00000111 122456667777766 5689999999988887654221
Q ss_pred cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEE
Q 016458 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFD 278 (389)
Q Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d 278 (389)
+...+.-+..+.+...+.+++-.+-.+.+|++.++ ...+.+.+|...+..+.++| +.....+++.||...|||
T Consensus 351 -----~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 351 -----RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred -----hccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 11111112222223356677777888999999988 78888899999999999999 555567899999999999
Q ss_pred CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (389)
+-.+.++..+...+.. +....||++|..++....-|.++|.....++..
T Consensus 425 i~eg~pik~y~~gh~k-----l~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 425 IWEGIPIKHYFIGHGK-----LVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred cccCCcceeeecccce-----eeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 9999998888765443 788899999999999999999999986655443
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.2e-19 Score=146.04 Aligned_cols=225 Identities=19% Similarity=0.276 Sum_probs=167.4
Q ss_pred CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC-CCcEEEEee
Q 016458 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSS 178 (389)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~ 178 (389)
.....+.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||.-..+ .....-.+|...|.++.|.|. ++.++++|.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K------llhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK------LLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc------eeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 3446678999999999999999999999999999999987533 244555799999999999996 446788999
Q ss_pred CCCeEEEEeCCCC----------eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE--
Q 016458 179 GDQTCVLWDITTG----------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-- 246 (389)
Q Consensus 179 ~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 246 (389)
.|..|+++|+... .....+ ..|...|..++..|...+.+.++++||+|+-||++.+..+-...
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~-----~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCW-----SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhh-----hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence 9999999999852 222233 56888899999999777999999999999999999753222111
Q ss_pred -------eeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCc------------------eeeEeeccCCCCC----
Q 016458 247 -------HGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH------------------QLQVYYQQHGENE---- 296 (389)
Q Consensus 247 -------~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~~~~~~~~---- 296 (389)
.+.--...++..+| +..+|++|+.|-..++||.+... ++..+...+..+.
T Consensus 190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~ 269 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNL 269 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccc
Confidence 11223467899999 56789999999999999943211 1111211111011
Q ss_pred ---CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 297 ---IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 297 ---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
...++-++|+|+|.-|++.-....|+++|+..++....+
T Consensus 270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 270 DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 112577889999998887766678999999887766554
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.2e-17 Score=133.11 Aligned_cols=273 Identities=15% Similarity=0.116 Sum_probs=199.5
Q ss_pred cccCcEEEEEEcCCCC--eEEEEecCCcEEEEeCCCCCeeEEE------eeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 65 GHAGKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTHAI------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~--~l~~~~~dg~v~iw~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
.-...|+.++|.-+++ .|...+.|..+..+.+........+ .....+|..++.. ...|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 3455788888887664 4555546667777777666554433 3344556555543 4457777889999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC--CeEEEEeCCCCeeEEEecCcc----cCCCCCCee
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEF----QSGHTADVL 210 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~----~~~~~~~v~ 210 (389)
....+..... ....+.. ...+..+.-++..+.++++|+.. ..+.+||+++.+.+..-.... ...-+-.++
T Consensus 131 ~~k~~d~hss---~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 131 HDKSGDLHSS---KLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred eccCCccccc---cceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence 9986442111 1122222 25566777777777778889999 899999999885554432110 011223467
Q ss_pred EEEeeCCC--CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeE-
Q 016458 211 SVSISGSN--SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV- 287 (389)
Q Consensus 211 ~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~- 287 (389)
++.|.+ . ...|++++.-+.+++||.+...+++..+.-.+.+++++...|+++++++|..-|.+..||++.++....
T Consensus 207 di~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 207 DIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred cceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 788887 4 778999999999999999999899999998899999999999999999999999999999999888776
Q ss_pred eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (389)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (389)
+.... +.|+++..+|.++++++++-|..|+|+|+.+.+++... .-...++++-+.++
T Consensus 286 ~kg~t-----Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-----YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 286 LKGIT-----GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-----YVKSRLTFILLRDD 342 (412)
T ss_pred cCCcc-----CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-----hhhccccEEEecCC
Confidence 33333 35999999999999999999999999999997776554 23445677777553
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=9.1e-17 Score=140.51 Aligned_cols=234 Identities=15% Similarity=0.099 Sum_probs=156.3
Q ss_pred cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec---CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG---LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (389)
Q Consensus 90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (389)
.|.+||...... ..+..+...+...+|+|+|+.|+..+ .+..+.+|++.++.. ..+....+.+....|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------~~l~~~~~~~~~~~~ 250 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPRHNGAPAF 250 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------EEccCCCCCcCCeEE
Confidence 688888765443 44445667899999999999988654 245789999876431 112222233456799
Q ss_pred eeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-CCceEEE--eCCCCCc
Q 016458 167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLW--DTRVASR 241 (389)
Q Consensus 167 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~ 241 (389)
+|+|..++++.+.+| .|.+||+.++...... .+...+....|+| +++.|+..+. ++...+| |+..+
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt------~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g-- 321 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT------DGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGG-- 321 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc------CCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCC--
Confidence 999965555555555 5899999887665443 3344678899999 6666655444 4554555 55543
Q ss_pred ceeEEeeeccceEEEEEecCCCEEEEEecC---CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (389)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (389)
....+..+........|+|||++|+..+.+ ..|.+||+.++.... +.... ......|+|||++|+.++.+
T Consensus 322 ~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~------~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 322 APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTF------LDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCC------CCCCceECCCCCEEEEEEcC
Confidence 334444444456678999999999876643 358889998876432 22211 12457899999999998877
Q ss_pred Cc---EEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458 319 GD---CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 319 g~---i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
+. +.++++ ++.....+ ..|.+.+...+|+|
T Consensus 395 ~~~~~l~~~~~-~G~~~~~l----~~~~~~~~~p~Wsp 427 (429)
T PRK03629 395 GMGSVLNLVST-DGRFKARL----PATDGQVKFPAWSP 427 (429)
T ss_pred CCceEEEEEEC-CCCCeEEC----ccCCCCcCCcccCC
Confidence 64 667777 45555556 56778889999987
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=1.4e-16 Score=123.83 Aligned_cols=239 Identities=12% Similarity=0.230 Sum_probs=166.4
Q ss_pred EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC------CeEEE
Q 016458 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVL 185 (389)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i 185 (389)
...++|+.|...+++|..+| .+||+.+.-++. .........-.+.-+-|-. .-+.+.|+.+ ..|.|
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~-----~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES-----ASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhh-----hhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEE
Confidence 45589999999999998776 799998863211 0111111111222222322 1233344433 57999
Q ss_pred EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec--CCC
Q 016458 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGN 263 (389)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 263 (389)
||=....++..+ ....+|.++.+.+ +.+++.. .+.|++|......+.++.+....+|---++..| +..
T Consensus 80 WDD~k~~~i~el------~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 80 WDDLKERCIIEL------SFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred EecccCcEEEEE------EeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 997777777776 5678899999975 3455444 578999999855466666654333322333444 445
Q ss_pred EEEEEe-cCCeEEEEECCCCce--eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc-EEEEEcccceEEEeecCcC
Q 016458 264 RFGTGS-DDGTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-CYVWDTLLAKVVLNLGSLQ 339 (389)
Q Consensus 264 ~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~ 339 (389)
+|+.-+ .-|.|++-|+...+. ...+..+. ..|.+++++.+|..+|+++..|+ |+|||..+|..+.++..
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~-----s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR-- 222 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHD-----SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR-- 222 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEccc-----CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec--
Confidence 555544 569999999987655 24444433 35999999999999999999996 79999999999999974
Q ss_pred CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
......|.+|+|||++.+|+++|..|++.| +.+...
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHi----F~l~~~ 258 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHI----FSLRDT 258 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCCCeEEE----EEeecC
Confidence 334568999999999999999999999999 777653
No 218
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=4e-18 Score=128.88 Aligned_cols=274 Identities=17% Similarity=0.156 Sum_probs=184.5
Q ss_pred cccccCCCCCcccCCCcceeeeecc-cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEEC
Q 016458 40 GYSRSQGRAPVSFGPTDLVCCRTLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118 (389)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~ 118 (389)
.++....+....|.....+....++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++.-+..+..-. -.++++-|.
T Consensus 28 L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~S---i~~nslgFC 103 (323)
T KOG0322|consen 28 LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHS---IVVNSLGFC 103 (323)
T ss_pred hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEee---eeccccccc
Confidence 5566677788889888888888888 66779999999987 578889999999999998765544333 223344333
Q ss_pred C-----CCc----EEEEecCCC-cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC--CcEEEEeeCCCeEEEE
Q 016458 119 P-----TGQ----SVACGGLDS-VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLW 186 (389)
Q Consensus 119 ~-----~~~----~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw 186 (389)
+ +++ .++.-+... .+++-|..... ..........+..+.+.|..+.... .-++++|..+|.+.+|
T Consensus 104 rfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t---qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~w 180 (323)
T KOG0322|consen 104 RFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT---QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIW 180 (323)
T ss_pred cceeccCCCcchhheecCCcccchhhhhccCccc---eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEE
Confidence 2 211 111111100 01111111100 0000001112234566766643322 2356788889999999
Q ss_pred eCCCCeeEEEecCc-----ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc--cee-EEeeeccceEEEEE
Q 016458 187 DITTGLRTSVFGGE-----FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVR-TFHGHEGDVNTVKF 258 (389)
Q Consensus 187 d~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~-~~~~~~~~i~~~~~ 258 (389)
|+.++..+..++.. ....|..+|.++.+.+ ..+.=++|+.+..+..|++..... ++. ...-.+-.|..+..
T Consensus 181 d~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrI 259 (323)
T KOG0322|consen 181 DLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRI 259 (323)
T ss_pred EccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEE
Confidence 99998544443221 1146888999999987 444446777788899998864411 111 22223446888999
Q ss_pred ecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458 259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
-||++.+++++.|+.|++|..++..++..+..+.. .|++++|+|+.+.+|+++.|++|.+|++
T Consensus 260 RpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-----gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 260 RPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-----GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-----ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999998877654 4999999999999999999999999986
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=5.9e-19 Score=143.54 Aligned_cols=252 Identities=15% Similarity=0.199 Sum_probs=195.3
Q ss_pred EeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458 105 IKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 184 (389)
Q Consensus 105 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 184 (389)
+....-....+.++.+|..|+.|+..|.+..+|..+.. +...+ .-...|.++.|..+. + +++......++
T Consensus 125 L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~-------L~~Ei-~v~Etv~Dv~~LHne-q-~~AVAQK~y~y 194 (545)
T KOG1272|consen 125 LSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK-------LHFEI-NVMETVRDVTFLHNE-Q-FFAVAQKKYVY 194 (545)
T ss_pred ccccccCCeeeeecCCccEEEecCCccceeeeecccce-------eeeee-ehhhhhhhhhhhcch-H-HHHhhhhceEE
Confidence 34434446788999999999999999999999998754 22222 234568889998864 4 55556668899
Q ss_pred EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCE
Q 016458 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 264 (389)
Q Consensus 185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (389)
|||- .|..+..+ .....|..+.|.| ...+|++++..|.++.-|+..+ +.+..+....+.+..++-+|-+..
T Consensus 195 vYD~-~GtElHCl------k~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP~NaV 265 (545)
T KOG1272|consen 195 VYDN-NGTELHCL------KRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNPYNAV 265 (545)
T ss_pred EecC-CCcEEeeh------hhcCchhhhcccc-hhheeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCCccce
Confidence 9995 45555555 3446789999999 8889999999999999999998 788888878888999999998889
Q ss_pred EEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCC
Q 016458 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 344 (389)
Q Consensus 265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (389)
+-+|...|+|.+|.....+++..+..+.+. |.++++.++|+|+++++.|..++|||++....+.++. . ..
T Consensus 266 ih~GhsnGtVSlWSP~skePLvKiLcH~g~-----V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~----t-p~ 335 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKEPLVKILCHRGP-----VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR----T-PH 335 (545)
T ss_pred EEEcCCCceEEecCCCCcchHHHHHhcCCC-----cceEEECCCCcEEeecccccceeEeeeccccccceee----c-CC
Confidence 999999999999999999888888776664 9999999999999999999999999999888776663 2 34
Q ss_pred CeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCcccc
Q 016458 345 RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWGVK 387 (389)
Q Consensus 345 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~~~~ 387 (389)
+...+++|..| +++++....+.||..+-+.....-.|+|.|
T Consensus 336 ~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H 376 (545)
T KOG1272|consen 336 PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNH 376 (545)
T ss_pred Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhh
Confidence 67788888766 445556668888222222222334456554
No 220
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=3.1e-17 Score=128.10 Aligned_cols=290 Identities=16% Similarity=0.170 Sum_probs=201.7
Q ss_pred cCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc
Q 016458 44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (389)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (389)
..++....|+..++.-...+..-..++.+++|||||+ .|.+..-|-.|.+|.+.+.+.. -++.....+..++|+|+|+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQ 146 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCc
Confidence 3445667788888888888888899999999999996 5556677889999998876543 3455556689999999999
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc
Q 016458 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 202 (389)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 202 (389)
+.+..+.-..-..+++..- ..+.....+.-.+-..+.+.|+|+| +. +.+||---...+..+
T Consensus 147 f~ai~sRrDCkdyv~i~~c----~~W~ll~~f~~dT~DltgieWsPdg-~~---------laVwd~~Leykv~aY----- 207 (447)
T KOG4497|consen 147 FCAILSRRDCKDYVQISSC----KAWILLKEFKLDTIDLTGIEWSPDG-NW---------LAVWDNVLEYKVYAY----- 207 (447)
T ss_pred eeeeeecccHHHHHHHHhh----HHHHHHHhcCCCcccccCceECCCC-cE---------EEEecchhhheeeee-----
Confidence 9888765432222222210 1122334444555667889999998 33 456664333332222
Q ss_pred CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC------------------------------------------
Q 016458 203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS------------------------------------------ 240 (389)
Q Consensus 203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------------------------ 240 (389)
...-.+..++|+| .+++|++|+.|+.+++.+--+-+
T Consensus 208 -e~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 208 -ERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred -eeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 2335688999999 88999999999999886521000
Q ss_pred -----------------cceeEEe------eeccceEEEEEecCCCEEEEEec--CCeEEEEECCCCceeeEeeccCCCC
Q 016458 241 -----------------RAVRTFH------GHEGDVNTVKFFPDGNRFGTGSD--DGTCRLFDIRTGHQLQVYYQQHGEN 295 (389)
Q Consensus 241 -----------------~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~ 295 (389)
..+..++ ...-.+.-++|++|..++++-.. -+.+.+||++..+....+.+.+
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~--- 362 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH--- 362 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc---
Confidence 0000111 01123567999999999888653 3579999999876655554433
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCe
Q 016458 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366 (389)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 366 (389)
+|....|+|....|+.+.....+++|.......+... ...-.|..++|.-+|..++..+.|..
T Consensus 363 ---piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP-----~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 ---PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-----KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ---ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-----CCCceeeeEEecCCCcEEEEEcCCce
Confidence 4999999999998888888888999998665444433 33357999999999999999998864
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2.9e-17 Score=144.02 Aligned_cols=222 Identities=18% Similarity=0.201 Sum_probs=149.7
Q ss_pred eeecccccCcEEEEEEcCCCCeEEEEecC---CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec-CCCcEEE
Q 016458 60 CRTLQGHAGKVYSLDWTSERNRIVSASQD---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSI 135 (389)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v 135 (389)
.+.+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++.... ....+....++|+|+|+.|+.+. .+|.+.|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence 45677888899999999999999887654 3699999988764332 22223345789999999888764 6787666
Q ss_pred E--eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCCCCCeeEE
Q 016458 136 F--NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 136 w--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~ 212 (389)
| |+.++. ...+..+...+....|+|++..+++++..+|...+|++.... ....+ .+.. ...
T Consensus 275 y~~d~~~~~--------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l------~~~~--~~~ 338 (429)
T PRK01742 275 YVMGANGGT--------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV------GGRG--YSA 338 (429)
T ss_pred EEEECCCCC--------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe------cCCC--CCc
Confidence 6 444322 234455666788899999986555566667888888765422 12222 1222 456
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC--CCceeeEeec
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR--TGHQLQVYYQ 290 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~ 290 (389)
.|+| +++.++..+.++ +.+||+.++ ... .+... .....+.|+|+|++|+.++.+|.+.+|++. ++.....+..
T Consensus 339 ~~Sp-DG~~ia~~~~~~-i~~~Dl~~g-~~~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 339 QISA-DGKTLVMINGDN-VVKQDLTSG-STE-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred cCCC-CCCEEEEEcCCC-EEEEECCCC-CeE-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 7999 777777766654 666998876 322 22211 123567899999999999999988888753 4666666643
Q ss_pred cCCCCCCCCeeEEEeCCC
Q 016458 291 QHGENEIPHVTSIAFSIS 308 (389)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~ 308 (389)
+.. .+...+|+|-
T Consensus 414 ~~g-----~~~~p~wsp~ 426 (429)
T PRK01742 414 SDG-----QVKFPAWSPY 426 (429)
T ss_pred CCC-----CCCCcccCCC
Confidence 332 3677888874
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.4e-16 Score=140.06 Aligned_cols=235 Identities=16% Similarity=0.147 Sum_probs=155.5
Q ss_pred CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---CcEEEEeCCCCCCCCCCCcceeeecccccceEEEE
Q 016458 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (389)
Q Consensus 89 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 165 (389)
..|.+||.. +.....+..+...+...+|+|+|+.|+..+.+ ..|.+|++.++. ...+....+...+..
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--------~~~l~~~~g~~~~~~ 254 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--------RELVASFRGINGAPS 254 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--------EEEeccCCCCccCce
Confidence 368889975 44445566667789999999999999887643 469999997643 122233344455789
Q ss_pred EeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCc--eEEEeCCCCC
Q 016458 166 YVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDST--ARLWDTRVAS 240 (389)
Q Consensus 166 ~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~ 240 (389)
|+|+|..++++.+.+| .|++||+.++..... ..+.......+|+| +++.|+.++ .+|. |+++|+..+
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l------t~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g- 326 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL------TNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGG- 326 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC------ccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC-
Confidence 9999966666666655 599999988875433 23344456789999 666655544 4555 666666544
Q ss_pred cceeEEeeeccceEEEEEecCCCEEEEEecCC---eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (389)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (389)
. ...+..+.......+|+|+|++|+..+.++ .|.+||+.++... .+.... ......|+|||++++..+.
T Consensus 327 ~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~------~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 327 S-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS------LDESPSFAPNGSMVLYATR 398 (433)
T ss_pred C-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC------CCCCceECCCCCEEEEEEe
Confidence 2 333333334455789999999998765443 6999999877654 322211 1345689999998877665
Q ss_pred C---CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458 318 N---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 318 d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
+ +.|+++++.. .....+ ..+.+.+...+|+|
T Consensus 399 ~~g~~~L~~~~~~g-~~~~~l----~~~~g~~~~p~wsp 432 (433)
T PRK04922 399 EGGRGVLAAVSTDG-RVRQRL----VSADGEVREPAWSP 432 (433)
T ss_pred cCCceEEEEEECCC-CceEEc----ccCCCCCCCCccCC
Confidence 3 3578888754 444444 34556677788876
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2.2e-16 Score=138.32 Aligned_cols=238 Identities=16% Similarity=0.173 Sum_probs=152.4
Q ss_pred CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---CcEEEEeCCCCCCCCCCCcceeeecccccceEEEE
Q 016458 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (389)
Q Consensus 89 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 165 (389)
..|.++|. ++.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.++. ...+....+.+....
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~--------~~~l~~~~g~~~~~~ 246 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR--------RRVVANFKGSNSAPA 246 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC--------EEEeecCCCCccceE
Confidence 35777776 455555555667789999999999999877643 459999998754 122222334566889
Q ss_pred EeeCCCcEEEEeeCCCeEEEEe--CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-EeeCCCceEEEeCCCCCcc
Q 016458 166 YVPDEDTHLITSSGDQTCVLWD--ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDTRVASRA 242 (389)
Q Consensus 166 ~~~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~ 242 (389)
|+|++..++++.+.+|...+|. +..+.. ..+ ..+........|+| +++.++ ++..+|...+|.+......
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~l-----t~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRL-----TQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCc-EEC-----CCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCc
Confidence 9999866556777787766654 444442 333 23444556788999 666555 4444566777765432222
Q ss_pred eeEEeeeccceEEEEEecCCCEEEEEecCC---eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (389)
Q Consensus 243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (389)
...+..+.......+|+|+|++|+..+.++ .|.+||+.++.... +.... ......|+|||++|+.++.++
T Consensus 320 ~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~------~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 320 AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTT------RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCC------CccCceECCCCCEEEEEEecC
Confidence 333332333345688999999998777654 69999998876443 22211 135678999999888776544
Q ss_pred ---cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458 320 ---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (389)
Q Consensus 320 ---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (389)
.+++.++ ++.....+ ..+.+.+...+|+|-
T Consensus 393 g~~~l~~~~~-~g~~~~~l----~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 393 GRSVLAAVSS-DGRIKQRL----SVQGGDVREPSWGPF 425 (427)
T ss_pred CCEEEEEEEC-CCCceEEe----ecCCCCCCCCccCCC
Confidence 3556666 45555555 445667778888873
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.4e-15 Score=133.87 Aligned_cols=233 Identities=15% Similarity=0.146 Sum_probs=157.3
Q ss_pred cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC---CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (389)
Q Consensus 90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (389)
.|.++|.. +.....+..+...+...+|+|+|+.|+..+. +..|.+||+.++. ...+..+.+.+....|
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--------~~~l~~~~g~~~~~~~ 253 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--------RELVGNFPGMTFAPRF 253 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--------EEEeecCCCcccCcEE
Confidence 78888874 4555666777788999999999999887653 4689999997753 2234445566778899
Q ss_pred eeCCCcEEEEeeCCCe--EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCC--ceEEEeCCCCCc
Q 016458 167 VPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDS--TARLWDTRVASR 241 (389)
Q Consensus 167 ~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~ 241 (389)
+|+|..++++.+.++. |.+||+.++..... ..+........|+| +++.++..+ .+| .|+++|+...
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L------t~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~-- 324 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL------TDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGS-- 324 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCceEEc------cCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCC--
Confidence 9999666667666655 77789888765443 23445567789999 666665554 344 5777787644
Q ss_pred ceeEEeeeccceEEEEEecCCCEEEEEecC---CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (389)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (389)
....+..+...+....|+|+|+.|+..+.+ ..|.+||+..+.. ..+.... .+....|+|||++|+..+.+
T Consensus 325 ~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~------~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 325 NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF------LVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCC------CCCCCeECCCCCEEEEEEcc
Confidence 334444445556778999999999877643 3688889765433 3322211 25678999999988765543
Q ss_pred ------CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458 319 ------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 319 ------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
..++++|+..+.. ..+ . ..+.+...+|+|
T Consensus 398 ~~~~~~~~L~~~dl~g~~~-~~l----~-~~~~~~~p~Wsp 432 (435)
T PRK05137 398 PGSGGAPKLYTVDLTGRNE-REV----P-TPGDASDPAWSP 432 (435)
T ss_pred CCCCCcceEEEEECCCCce-EEc----c-CCCCccCcccCC
Confidence 2578888866544 343 2 233466677776
No 225
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.76 E-value=8.2e-15 Score=124.43 Aligned_cols=270 Identities=15% Similarity=0.166 Sum_probs=172.5
Q ss_pred CcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec
Q 016458 49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG 128 (389)
Q Consensus 49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 128 (389)
....+....+...++......-..+.|+|||+++++++.||.|.++|+.+.+.+.+++.... ...++++++|++++++.
T Consensus 18 v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n 96 (369)
T PF02239_consen 18 VAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVAN 96 (369)
T ss_dssp EEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEE
T ss_pred EEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEe
Confidence 33455666777888876655545678999999999999999999999999999999987654 78899999999998775
Q ss_pred -CCCcEEEEeCCCCCCCCCCCcceeeecc-------cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc
Q 016458 129 -LDSVCSIFNLNSPTDKDGNLPVSRMLSG-------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (389)
Q Consensus 129 -~dg~i~vw~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 200 (389)
..+.+.++|..+.+ ....+.. ....+..+..+|..+.++++.-..+.|.+.|.........-.
T Consensus 97 ~~~~~v~v~D~~tle-------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-- 167 (369)
T PF02239_consen 97 YEPGTVSVIDAETLE-------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-- 167 (369)
T ss_dssp EETTEEEEEETTT---------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE--
T ss_pred cCCCceeEecccccc-------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee--
Confidence 58999999988743 3443332 234677888888875455555556899888987754332211
Q ss_pred ccCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEeCCCCCc--------------------------------------
Q 016458 201 FQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASR-------------------------------------- 241 (389)
Q Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~-------------------------------------- 241 (389)
...........|+| +++++ ++...+..|.++|..+...
T Consensus 168 --i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 168 --IKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp --EE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred --ecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 23445677888998 55554 4445566777777664411
Q ss_pred ----------------ceeEEeeeccceEEEEEecCCCEEEEE----ecCCeEEEEECCCCceeeEeeccCCCCCCCCee
Q 016458 242 ----------------AVRTFHGHEGDVNTVKFFPDGNRFGTG----SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (389)
Q Consensus 242 ----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~ 301 (389)
.++.+.....+ .-+..+|+++++.+. ...+.|.++|.++.+....+...... .+.
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~----~~~ 319 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK----RVV 319 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------EE
T ss_pred cccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC----cEe
Confidence 11111111112 346778999999988 45589999999998776666443321 388
Q ss_pred EEEeCCCCCEEEEEecCC--cEEEEEcccceEEEeec
Q 016458 302 SIAFSISGRLLFAGYSNG--DCYVWDTLLAKVVLNLG 336 (389)
Q Consensus 302 ~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~ 336 (389)
.+.|+++|+++..+..++ .|.+||..+.+....+.
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 999999999777765543 69999999999998883
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.1e-16 Score=122.85 Aligned_cols=240 Identities=18% Similarity=0.255 Sum_probs=159.6
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
..+..++|++.-..++++..|..|++|+-.... ...........|+|++|-|.+...|+.|+..| |.+|...
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~-------pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s 170 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-------PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDS 170 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCC-------CceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcC
Confidence 457889999988888999999999999977622 11222233567999999999877788777755 8899765
Q ss_pred CCeeEEEe----c---C-cccCCCCCCeeEEEeeCCCCcEEEEeeC-CCceEEEeCCCCCcceeEEeeeccceEEEEEec
Q 016458 190 TGLRTSVF----G---G-EFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260 (389)
Q Consensus 190 ~~~~~~~~----~---~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (389)
........ . . ..+.....+|+++.|.+ ++..+++++. |..|.|||..++ ..+.......+.+.-+.|||
T Consensus 171 ~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwSP 248 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWSP 248 (445)
T ss_pred cccccccccccccccchhheeCCCCceeeEEEEcC-CCCEEeecccCcceEEEEcCCCC-CcccccccCCCceeeEEEcC
Confidence 32111110 0 0 00112237899999999 6777777664 678999999987 33333333456788999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce----------
Q 016458 261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK---------- 330 (389)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------- 330 (389)
|+.+|++++-|+..++|...............+ .|...+|+|+|++|+.... |.-++|.+....
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-----rvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTKERWILGSG-----RVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred CCCEEEEecccceeeeehhcccceecceeccCC-----ceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCccc
Confidence 999999999999999996554333333333222 4899999999997665543 234455432110
Q ss_pred -----EEEeecC-----cCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 331 -----VVLNLGS-----LQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 331 -----~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
.+..+.. ...-..+++.+++|+|.|.+|++.-..+
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 0111100 0012356889999999999999866544
No 227
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.6e-17 Score=134.11 Aligned_cols=272 Identities=19% Similarity=0.281 Sum_probs=200.1
Q ss_pred eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC-CCcEEEEeeC
Q 016458 101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSG 179 (389)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~ 179 (389)
....+..|.+.|..+.|+..|..|++|+.|..|.+||+.... +......+|...|....|.|. +...+++++.
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC------cccccccccccchhhhhccCCCCCcCceeccc
Confidence 345667899999999999999999999999999999998754 234455688888888889886 3467999999
Q ss_pred CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE---eeecc---ce
Q 016458 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---HGHEG---DV 253 (389)
Q Consensus 180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~---~i 253 (389)
||.|++=.+.......... ....|.++|.-++.-|...+-|.+++.|+.+.-+|++.. .+...+ ..+.. ..
T Consensus 208 dgqvr~s~i~~t~~~e~t~--rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~-~pa~~~~cr~~~~~~~v~L 284 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTK--RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD-VPAEKFVCREADEKERVGL 284 (559)
T ss_pred cCceeeeeeccccceecce--ecccccCccceeeecCCCCCcccccccccceeeeeeccC-CccceeeeeccCCccceee
Confidence 9999987765433222111 115799999999999989999999999999999999876 332222 22333 46
Q ss_pred EEEEEecC-CCEEEEEecCCeEEEEECCCCcee------eEeeccCCC-CCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458 254 NTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQL------QVYYQQHGE-NEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (389)
Q Consensus 254 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (389)
..++..|. ...+++++.|-.+++||.+.-... ..+..++.. .....|++++|+.++.-|.++..|-.|+++.
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence 78888884 458999999999999998753322 333332221 2333599999998888888888888999995
Q ss_pred cccceE--E-------EeecCcCCCCCC--CeeEEEE-CCCCCeEEeeeCCCeeEEeecceecccCcccCcc
Q 016458 326 TLLAKV--V-------LNLGSLQNSHEG--RITCLGL-SADGSALCTGSWDTNLKVNLGFWRVQEGALSPWG 385 (389)
Q Consensus 326 ~~~~~~--~-------~~~~~~~~~~~~--~v~~~~~-~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~~ 385 (389)
-..+.- + ...+...++|.. .|.++-| -|...|+++|+.-|.|.| |+-.+++++.+|
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi----W~K~t~eii~~M 432 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI----WDKKTGEIIRFM 432 (559)
T ss_pred cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE----EecchhHHHHHh
Confidence 432211 0 001111156654 4777755 578899999999999999 999999988766
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1e-15 Score=122.33 Aligned_cols=255 Identities=13% Similarity=0.175 Sum_probs=180.5
Q ss_pred CcEEEEEECCCC--cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458 110 AWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (389)
Q Consensus 110 ~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 187 (389)
..+..++|.-++ ..+...+.+..+..+.+....... ............++|..++... ..|++|-.+|.+.+|.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s-~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS-SLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccc-ccccccccccccccccchhhcC---CEEEEEecCCcEEEEe
Confidence 457777776544 344444456666666665533111 1011123334456677766654 3688999999999999
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC--CceEEEeCCCCCcceeEEee---------eccceEEE
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLWDTRVASRAVRTFHG---------HEGDVNTV 256 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~---------~~~~i~~~ 256 (389)
...+......... ......+..+.-++....++++|+.. ..+.+||+... +.+..-.. -.-.++.+
T Consensus 132 ~k~~d~hss~l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 132 DKSGDLHSSKLIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred ccCCcccccccee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccc
Confidence 8854311110000 12335566777777677888889998 89999999866 33222111 11236788
Q ss_pred EEecC--CCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEe
Q 016458 257 KFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 334 (389)
Q Consensus 257 ~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 334 (389)
.|-+. ...|++++.-+.+++||.+.++......... ..+++++...|+|+++++|..-|.+..||++.++....
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~----E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL----ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccc----cCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 89887 7899999999999999999776544332222 22599999999999999999999999999999998877
Q ss_pred ecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 335 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 335 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
.. .+..+.|+++..+|..++|+++|-|..+|| +|+++.++.
T Consensus 285 ~~---kg~tGsirsih~hp~~~~las~GLDRyvRI----hD~ktrkll 325 (412)
T KOG3881|consen 285 GL---KGITGSIRSIHCHPTHPVLASCGLDRYVRI----HDIKTRKLL 325 (412)
T ss_pred cc---CCccCCcceEEEcCCCceEEeeccceeEEE----eecccchhh
Confidence 22 788999999999999999999999999999 999996654
No 229
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.74 E-value=1.6e-15 Score=119.26 Aligned_cols=287 Identities=18% Similarity=0.277 Sum_probs=184.9
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-----eeEEEeeCC------------CcEEEEEECCCC--cEEEEe
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPC------------AWVMTCAFSPTG--QSVACG 127 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 127 (389)
.+-|.++.|...|.+||||..+|.|.+|.-.... ....++.|. +.|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4468999999999999999999999999654332 122233332 468899998865 457778
Q ss_pred cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
+.|.+|++|.+.....+..... ....+..+.++.+.. -+.+..|-.+. ..+...+ ...|..
T Consensus 105 tNdktiKlWKi~er~~k~~~~~--~~~~~~~~~~~~lr~-------p~~~~~~~~ve------a~prRv~----aNaHty 165 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYN--LPEEGPPGTITSLRL-------PVEGRHDLEVE------ASPRRVY----ANAHTY 165 (433)
T ss_pred cCCcceeeeeeecccccccccc--ccccCCCCccceeec-------eeeccccceee------eeeeeec----ccccee
Confidence 8899999999987442211100 001111222222221 11111111110 0112222 267888
Q ss_pred CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE--eeec-----cceEEEEEec-CCCEEEEEecCCeEEEEEC
Q 016458 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHE-----GDVNTVKFFP-DGNRFGTGSDDGTCRLFDI 279 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~-----~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 279 (389)
.|.++.++. +...++++ .|-.|.+|++.-..+..... ++++ .-|++..|+| ..+.++-.+..|+|++-|+
T Consensus 166 hiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 166 HINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred EeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 999999997 66666654 57889999987654443332 3332 3588999999 5678888889999999999
Q ss_pred CCCceeeEe----eccCCC-------CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc-cceEEEeecCcCCCCC----
Q 016458 280 RTGHQLQVY----YQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHE---- 343 (389)
Q Consensus 280 ~~~~~~~~~----~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~---- 343 (389)
+........ ..+..+ .-...|..+.|+++|+|+++-+.- +|.+||+. ..+++.+. ..|.
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~----~vh~~lr~ 318 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETY----PVHEYLRS 318 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEE----eehHhHHH
Confidence 854322111 111111 112358899999999999987554 89999994 45555555 2332
Q ss_pred --------CC---eeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 344 --------GR---ITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 344 --------~~---v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
.. -..++|+.++.+++||+....+++ +++..|....
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frv----f~~~~gsk~d 365 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRV----FNLARGSKED 365 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEE----ecCCCCccee
Confidence 12 245789999999999999999999 9977775543
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.74 E-value=8e-14 Score=118.73 Aligned_cols=291 Identities=16% Similarity=0.170 Sum_probs=181.2
Q ss_pred EEEEecC----CcEEEEeC--CCCCeeEEE-eeCCCcEEEEEECCCCcEEEEecC----CCcEEEEeCCCCCCCCCCCcc
Q 016458 82 IVSASQD----GRLIVWNA--LTSQKTHAI-KLPCAWVMTCAFSPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPV 150 (389)
Q Consensus 82 l~~~~~d----g~v~iw~~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~ 150 (389)
+++|+.+ +.|.+|++ .+++....- .........++++|++++|++... ++.|..|++.... ..+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~---g~L~~ 78 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT---GTLTL 78 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT---TEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc---ceeEE
Confidence 4455555 68999888 344332211 123455778999999999998866 5789999987632 22333
Q ss_pred eeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEec---C-----cccCCCCCCeeEEEeeCCCCcE
Q 016458 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFG---G-----EFQSGHTADVLSVSISGSNSRM 221 (389)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~---~-----~~~~~~~~~v~~~~~~~~~~~~ 221 (389)
.............++++|++..++++...+|.|.++++... ....... . ...........++.++| ++++
T Consensus 79 ~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~ 157 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRF 157 (345)
T ss_dssp EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSE
T ss_pred eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCE
Confidence 33343334556678999998555555557999999999874 3322211 0 00112345678999999 6555
Q ss_pred EEEe-eCCCceEEEeCCCCCcceeE---Ee-eeccceEEEEEecCCCEEEEEe-cCCeEEEEECC--CCce--eeEeecc
Q 016458 222 FVSG-SCDSTARLWDTRVASRAVRT---FH-GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIR--TGHQ--LQVYYQQ 291 (389)
Q Consensus 222 l~~~-~~dg~i~i~d~~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~--~~~~~~~ 291 (389)
+++. -....|.+|++......+.. +. ......+.+.|+|+++++++.. .++.|.+|++. .+.. .......
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 5554 44568999999765322322 21 2345678999999999886665 57889999988 3322 2222211
Q ss_pred C-CCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcc--cce--EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC-C
Q 016458 292 H-GENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL--LAK--VVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-D 364 (389)
Q Consensus 292 ~-~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 364 (389)
. ..........++++|||++|+++.. .+.|.+|++. +++ .+..+ .........++++|+|++|+++.. +
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~----~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV----PTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE----EESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE----eCCCCCccEEEEeCCCCEEEEEecCC
Confidence 1 1111225788999999999888764 5689999983 232 23333 223345799999999999998874 5
Q ss_pred CeeEEeecceec--ccCcccCc
Q 016458 365 TNLKVNLGFWRV--QEGALSPW 384 (389)
Q Consensus 365 g~i~i~~~~W~~--~~~~~~~~ 384 (389)
+.|.+ |++ ++|++...
T Consensus 314 ~~v~v----f~~d~~tG~l~~~ 331 (345)
T PF10282_consen 314 NTVSV----FDIDPDTGKLTPV 331 (345)
T ss_dssp TEEEE----EEEETTTTEEEEE
T ss_pred CeEEE----EEEeCCCCcEEEe
Confidence 78888 765 57777653
No 231
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.73 E-value=5.7e-16 Score=121.74 Aligned_cols=256 Identities=15% Similarity=0.226 Sum_probs=186.9
Q ss_pred CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEe-CCCCCeeEEEe-eCCCcEEEEEECCCCcEEEEecCCCc
Q 016458 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN-ALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSV 132 (389)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (389)
..+...+.++||.+.|++...-|..+-+++.+.|.+++||- .+.++.-..+. .-..+++++.+.++...|++|-.+|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 34567788999999999999999888999999999999994 34444433332 23467899999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
+.-+.+...- ......+....|...+..+.|+-.. ..+++.+.|..+.---.+.+..+..+.. ....+++
T Consensus 92 vtefs~sedf---nkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~------~~~~t~~ 161 (404)
T KOG1409|consen 92 VTEFALSEDF---NKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF------ETPASAL 161 (404)
T ss_pred EEEEEhhhhh---hhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe------eccCCCC
Confidence 9998877532 2344566677899999999998765 6888889888776555555544433311 1111122
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCC-CcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeecc
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 291 (389)
.+.- .+...|...|.|....+... -.++..+.+|.+.+.+++|.|....|.+|..|..+.+||+-..+........
T Consensus 162 ~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 162 QFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred ceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence 2211 14556666677666554322 2577888999999999999999999999999999999999765544433332
Q ss_pred CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
+. ..+..+..-+--+.+++++.||.|.+|+++
T Consensus 239 h~----~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 239 HN----DKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ch----hhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 22 237777777777889999999999999864
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.73 E-value=7.6e-16 Score=118.84 Aligned_cols=155 Identities=25% Similarity=0.363 Sum_probs=109.8
Q ss_pred eeEEEeeCCCCcEEEEeeC---------CCceEEEeCCCCCcceeEEee-eccceEEEEEecCCCEEEEE--ecCCeEEE
Q 016458 209 VLSVSISGSNSRMFVSGSC---------DSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTG--SDDGTCRL 276 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~i 276 (389)
-..+.|+|.+..+++.... -|...+|.++....+...+.- ..++|.+++|+|+|+.|++. ..++.|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3457788733334433331 234556665444445555543 34579999999999987654 36779999
Q ss_pred EECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec---CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
||++ ++.+..+.. . .++.+.|+|+|++|++++. .|.|.+||..+.+.+... .| ..++.++|+|
T Consensus 88 yd~~-~~~i~~~~~--~-----~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-----~~-~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVK-GKKIFSFGT--Q-----PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-----EH-SDATDVEWSP 153 (194)
T ss_pred EcCc-ccEeEeecC--C-----CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-----cc-CcEEEEEEcC
Confidence 9997 555555432 1 3788999999999999864 467999999988888765 23 3478999999
Q ss_pred CCCeEEeeeC------CCeeEEeecceecccCcc
Q 016458 354 DGSALCTGSW------DTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 354 ~~~~l~~~~~------dg~i~i~~~~W~~~~~~~ 381 (389)
||++|+++.. |+.++| |++....+
T Consensus 154 dGr~~~ta~t~~r~~~dng~~I----w~~~G~~l 183 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKI----WSFQGRLL 183 (194)
T ss_pred CCCEEEEEEeccceeccccEEE----EEecCeEe
Confidence 9999999875 778888 99964433
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.5e-14 Score=121.14 Aligned_cols=278 Identities=17% Similarity=0.255 Sum_probs=177.5
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEe-----cC-----CCcEEEE
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-----GL-----DSVCSIF 136 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg~i~vw 136 (389)
..+++..+++++|+++|.+.. ..++|++..++..+.+.... .+.++.|+|.+.+|.+- .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 445778889999988877654 58999999888744444333 68999999999998762 11 2347799
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
++.+.... .....+...+ ++..|+.|. .+++--..+.+.+|++.+...... .-|...+..+.++|
T Consensus 111 ~vet~~~~-----s~~q~k~Q~~--W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~~------kl~~~~i~~f~lSp 175 (566)
T KOG2315|consen 111 NVETGVQR-----SQIQKKMQNG--WVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQH------KLSVSGITMLSLSP 175 (566)
T ss_pred eeccceeh-----hheehhhhcC--cccccccch--hhhhhhhcceEEEEecCCccceee------eeeccceeeEEecC
Confidence 98873211 0111111122 577888875 344444456788888776433222 23445556666655
Q ss_pred C-CCcEEEE-----eeCCCceEEEe-------------------------------------------------------
Q 016458 217 S-NSRMFVS-----GSCDSTARLWD------------------------------------------------------- 235 (389)
Q Consensus 217 ~-~~~~l~~-----~~~dg~i~i~d------------------------------------------------------- 235 (389)
. ....+++ .+.-+.++||.
T Consensus 176 gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyl 255 (566)
T KOG2315|consen 176 GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYL 255 (566)
T ss_pred CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEE
Confidence 3 1222221 12223344443
Q ss_pred --CCCCCcceeEEeeeccceEEEEEecCCCEEEE--EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458 236 --TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT--GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (389)
Q Consensus 236 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (389)
+. + .....--...++|.++.|+|++.-+++ |-.-..+.|||++ +..+..+... +-+++-|+|.|++
T Consensus 256 l~t~-g-~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg-------pRN~~~fnp~g~i 325 (566)
T KOG2315|consen 256 LATQ-G-ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG-------PRNTAFFNPHGNI 325 (566)
T ss_pred EEec-C-ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC-------CccceEECCCCCE
Confidence 32 1 111111123689999999999987655 4467789999987 4555554332 2578999999998
Q ss_pred EEEEec---CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC------CeeEEeecceecccCccc
Q 016458 312 LFAGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD------TNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 312 l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~~~~W~~~~~~~~ 382 (389)
++.++- .|.|-|||+.+.+.+..+ ... .-+-+.|+|||++++|+... +.++| |+.....+.
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~----~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Ki----whytG~~l~ 395 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKF----KAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKI----WHYTGSLLH 395 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhcccc----ccC--CceEEEEcCCCcEEEEEeccccEEecCCeEE----EEecCceee
Confidence 887654 579999999998888777 333 23557899999999998864 55666 998754443
No 234
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.72 E-value=4.6e-16 Score=129.23 Aligned_cols=238 Identities=17% Similarity=0.265 Sum_probs=157.0
Q ss_pred EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe-----eCCCcEEEEeeCCCeEEEE
Q 016458 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-----PDEDTHLITSSGDQTCVLW 186 (389)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~iw 186 (389)
+....++-.|.+|+..- ...+++|+......... ++.+.+... ....|-.|+ +.+ --++.|-.-|.|.+.
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~--pi~k~~y~g-t~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSK--PIDKREYKG-TSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLI 200 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhcc--chhhhcccC-CCCceecccccccCCCC-cceEEeeccCceEEe
Confidence 44555555677776543 34688999886332111 122222111 222333442 333 447778888999999
Q ss_pred eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE--EecCCCE
Q 016458 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK--FFPDGNR 264 (389)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~ 264 (389)
|....+....+... .......++++.|-|.+...++++-.+|.+++||.... ...+... ..+++..
T Consensus 201 dp~~~~~sklfne~-r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------~~~t~p~~~~~k~~~~ 268 (636)
T KOG2394|consen 201 DPINFEVSKLFNEE-RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------CGATAPSYQALKDGDQ 268 (636)
T ss_pred cchhhHHHHhhhhc-ccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------ccCCCCcccccCCCCe
Confidence 87764333322211 12344789999999988889999999999999987321 1111111 2234544
Q ss_pred EEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCC
Q 016458 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 344 (389)
Q Consensus 265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (389)
+.....-+ ..+..++..+..... .|..++|+|||++||+.+.||.++|||..+.+.+..+ +.--+
T Consensus 269 f~i~t~ks------k~~rNPv~~w~~~~g-----~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m----kSYFG 333 (636)
T KOG2394|consen 269 FAILTSKS------KKTRNPVARWHIGEG-----SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM----KSYFG 333 (636)
T ss_pred eEEeeeec------cccCCccceeEeccc-----cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH----Hhhcc
Confidence 54432211 111133444433333 3899999999999999999999999999998888777 45567
Q ss_pred CeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCcc
Q 016458 345 RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPWG 385 (389)
Q Consensus 345 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~~ 385 (389)
...|++|||||+||++|+.|..|.| |.+.+++++.|+
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtV----wSf~erRVVARG 370 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTV----WSFEERRVVARG 370 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEE----EEeccceEEEec
Confidence 8999999999999999999999999 999999998763
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=3.1e-14 Score=125.27 Aligned_cols=216 Identities=16% Similarity=0.105 Sum_probs=142.3
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC---CCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
..|.+||..... ...+..+...+.+..|+|++. .++..+. ...|.+||+.++...... ....
T Consensus 184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~------~~~g 248 (433)
T PRK04922 184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVA------SFRG 248 (433)
T ss_pred EEEEEECCCCCC--------ceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEec------cCCC
Confidence 358888876432 234455667889999999985 5555442 347999999887664432 2334
Q ss_pred CeeEEEeeCCCCcEEEEeeCCC--ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CCe--EEEEECCCC
Q 016458 208 DVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGT--CRLFDIRTG 282 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~ 282 (389)
...+..|+|++..++++.+.+| .|++||+.++ . ...+..+.......+|+|||+.|+..+. +|. |+++|+.++
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g-~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR-Q-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCC-C-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 4557899994444545656665 5899998865 3 3445555555677899999998887764 444 777777666
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC---cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEE
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 359 (389)
+..... .... .....+|+|+|++|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+
T Consensus 327 ~~~~lt-~~g~-----~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-----~~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 327 SAERLT-FQGN-----YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-----PGSLDESPSFAPNGSMVL 394 (433)
T ss_pred CeEEee-cCCC-----CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-----CCCCCCCceECCCCCEEE
Confidence 543322 1111 244689999999988765443 5999999877654 331 222345678999999888
Q ss_pred eeeCC---CeeEEeecceecccC
Q 016458 360 TGSWD---TNLKVNLGFWRVQEG 379 (389)
Q Consensus 360 ~~~~d---g~i~i~~~~W~~~~~ 379 (389)
..+.+ +.+.+ +++..+
T Consensus 395 ~~s~~~g~~~L~~----~~~~g~ 413 (433)
T PRK04922 395 YATREGGRGVLAA----VSTDGR 413 (433)
T ss_pred EEEecCCceEEEE----EECCCC
Confidence 77654 34555 777544
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.9e-14 Score=125.64 Aligned_cols=218 Identities=15% Similarity=0.116 Sum_probs=145.4
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee---CCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
..|.++|.+... ...+..|...+.+..|+|+|. .|+..+ .+..|.+||+.++..... ..+..
T Consensus 182 ~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l------~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELV------GNFPG 246 (435)
T ss_pred eEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEe------ecCCC
Confidence 368888876532 344556778899999999985 455443 346899999998866433 24455
Q ss_pred CeeEEEeeCCCCcEEEEeeCCCc--eEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CC--eEEEEECCCC
Q 016458 208 DVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTG 282 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~ 282 (389)
.+....|+|++..++++.+.++. |++||+... ....+..+........|+|||+.|+..+. +| .|+++|+..+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 67788999944444556666665 667787754 34555556666778999999999887764 33 6888898765
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEE
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 359 (389)
.... +..... .+....|+|+|++|+....+ ..|.+||+..+.. ..+. . ...+....|+|||+.|+
T Consensus 325 ~~~~-lt~~~~-----~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt---~--~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 325 NPRR-ISFGGG-----RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT---S--GFLVEGPTWAPNGRVIM 392 (435)
T ss_pred CeEE-eecCCC-----cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc---C--CCCCCCCeECCCCCEEE
Confidence 5433 322211 25668899999998876543 3588888765543 3331 1 22467889999999987
Q ss_pred eeeCCC------eeEEeecceecccCcc
Q 016458 360 TGSWDT------NLKVNLGFWRVQEGAL 381 (389)
Q Consensus 360 ~~~~dg------~i~i~~~~W~~~~~~~ 381 (389)
..+.++ .+.+ .++..+..
T Consensus 393 ~~~~~~~~~~~~~L~~----~dl~g~~~ 416 (435)
T PRK05137 393 FFRQTPGSGGAPKLYT----VDLTGRNE 416 (435)
T ss_pred EEEccCCCCCcceEEE----EECCCCce
Confidence 765532 4555 77766544
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=5.7e-14 Score=123.04 Aligned_cols=216 Identities=13% Similarity=0.105 Sum_probs=140.8
Q ss_pred cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee--CCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (389)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 209 (389)
.|.++|.+... ...+..+...+....|+|+|..++++.. .+..|.+||+.+++..... ......
T Consensus 180 ~l~~~d~dg~~--------~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~------~~~~~~ 245 (429)
T PRK03629 180 ELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA------SFPRHN 245 (429)
T ss_pred eEEEEcCCCCC--------CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc------CCCCCc
Confidence 68888887532 2333445678899999999854443332 3457999999887654432 223345
Q ss_pred eEEEeeCCCCcEEE-EeeCCC--ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC-C--eEEEEECCCCc
Q 016458 210 LSVSISGSNSRMFV-SGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGH 283 (389)
Q Consensus 210 ~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~ 283 (389)
....|+| +++.|+ +.+.+| .|++||+.++ . ...+..+...+....|+|||+.|+..+.+ + .|.++|+.++.
T Consensus 246 ~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg-~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 246 GAPAFSP-DGSKLAFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA 322 (429)
T ss_pred CCeEECC-CCCEEEEEEcCCCCcEEEEEECCCC-C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence 5689999 565555 445455 4888998765 3 34444455567889999999988877654 4 45555776654
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 360 (389)
.. .+..... ......|+|||++|+..+.+ ..|.+||+.+++.. .+. .. .......|+|||++|+.
T Consensus 323 ~~-~lt~~~~-----~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt---~~--~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 323 PQ-RITWEGS-----QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT---DT--FLDETPSIAPNGTMVIY 390 (429)
T ss_pred eE-EeecCCC-----CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC---CC--CCCCCceECCCCCEEEE
Confidence 43 2222111 24568899999988876543 35888999877643 332 11 12346789999999999
Q ss_pred eeCCCe---eEEeecceecccCc
Q 016458 361 GSWDTN---LKVNLGFWRVQEGA 380 (389)
Q Consensus 361 ~~~dg~---i~i~~~~W~~~~~~ 380 (389)
++.++. +.+ |+++.+.
T Consensus 391 ~s~~~~~~~l~~----~~~~G~~ 409 (429)
T PRK03629 391 SSSQGMGSVLNL----VSTDGRF 409 (429)
T ss_pred EEcCCCceEEEE----EECCCCC
Confidence 998875 455 7775443
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=7.7e-15 Score=123.09 Aligned_cols=248 Identities=17% Similarity=0.224 Sum_probs=175.0
Q ss_pred CCcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeeecccc-cceEEEEEeeCCCcEEEEeeCCCeEEEE
Q 016458 109 CAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (389)
Q Consensus 109 ~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw 186 (389)
...-+.|..+|||+|+ ++|...-.|++||+.+ +...+..|. ..+..+....+.-..++.-..|.+|-+-
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan---------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN---------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEccc---------ceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 4557889999999986 5677789999999987 344444442 2333333333322345555667777654
Q ss_pred eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEE
Q 016458 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (389)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (389)
.-....... .-+..-..++++..+..++++| ....|+-+++..+ .-+..+....+.++++..++...+|+
T Consensus 122 ak~G~hy~~--------RIP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla 191 (703)
T KOG2321|consen 122 AKYGRHYRT--------RIPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLA 191 (703)
T ss_pred hhcCeeeee--------ecCcCCccccccCCCccEEEee-cCcceEEEEcccc-ccccccccccccceeeeecCccceEE
Confidence 322211111 1223445667776555555554 4567888899887 77777777778999999999989999
Q ss_pred EEecCCeEEEEECCCCceeeEeeccCC------CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCC
Q 016458 267 TGSDDGTCRLFDIRTGHQLQVYYQQHG------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340 (389)
Q Consensus 267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 340 (389)
+|+.+|.|.+||.++......+..... .+....|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd---h 268 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD---H 268 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc---c
Confidence 999999999999998776666544322 2334459999999999999999999999999999998887653 4
Q ss_pred CCCCCeeEEEECCC--CCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 341 SHEGRITCLGLSAD--GSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 341 ~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
...-+|..+.|.+. +..+++. ....++| |+-.+|+...
T Consensus 269 ~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~ki----Wd~~~Gk~~a 308 (703)
T KOG2321|consen 269 GYELPIKKLDWQDTDQQNKVVSM-DKRILKI----WDECTGKPMA 308 (703)
T ss_pred CCccceeeecccccCCCceEEec-chHHhhh----cccccCCcee
Confidence 45568999999775 3444443 3467889 9999998754
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.3e-14 Score=125.60 Aligned_cols=208 Identities=18% Similarity=0.180 Sum_probs=133.6
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC---CCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
..|.++|.+... ...+..+...+.+.+|+|++. .++..+. ...|.+||+.++...... ....
T Consensus 176 ~~L~~~D~dG~~--------~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~------~~~g 240 (427)
T PRK02889 176 YQLQISDADGQN--------AQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVA------NFKG 240 (427)
T ss_pred cEEEEECCCCCC--------ceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEee------cCCC
Confidence 356666664321 233445667889999999985 4554443 246999999988765432 2334
Q ss_pred CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CCeEEEEEC--CCCce
Q 016458 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDI--RTGHQ 284 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~ 284 (389)
......|+|+...++++.+.+|...+|.++........+..+........|+|||+.|+..+. +|...+|.+ .++..
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence 566889999444444566778877777654322344555555555677899999998886654 455556654 44433
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC---cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 361 (389)
.. +..... ......|+|+|++|+..+.++ .|.+||+.+++... +. .. .......|+|||+.|+.+
T Consensus 321 ~~-lt~~g~-----~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt---~~--~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 321 QR-VTFTGS-----YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT---DT--TRDESPSFAPNGRYILYA 388 (427)
T ss_pred EE-EecCCC-----CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc---CC--CCccCceECCCCCEEEEE
Confidence 22 221111 134578999999998776554 59999998876543 31 11 234678999999998887
Q ss_pred eCCC
Q 016458 362 SWDT 365 (389)
Q Consensus 362 ~~dg 365 (389)
+.++
T Consensus 389 ~~~~ 392 (427)
T PRK02889 389 TQQG 392 (427)
T ss_pred EecC
Confidence 7654
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.68 E-value=5.7e-14 Score=123.99 Aligned_cols=232 Identities=17% Similarity=0.178 Sum_probs=149.8
Q ss_pred cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (389)
Q Consensus 90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (389)
.|.++|... .....+..+...+...+|+|+|++|+.+..+ ..|++|++.++. ...+..+.+.+.++.|
T Consensus 171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--------~~~~~~~~~~~~~~~~ 241 (417)
T TIGR02800 171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--------REKVASFPGMNGAPAF 241 (417)
T ss_pred eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--------EEEeecCCCCccceEE
Confidence 577888753 4445555566678899999999999887643 479999998743 1223334455677899
Q ss_pred eeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCC--ceEEEeCCCCCc
Q 016458 167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDS--TARLWDTRVASR 241 (389)
Q Consensus 167 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~ 241 (389)
+|++..++++.+.++ .|++||+.++...... .+........|+| +++.|+..+ .++ .|+++|+...
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~------~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~-- 312 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT------NGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGG-- 312 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEEECC------CCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCC--
Confidence 999865555655544 5889999887654332 3334445678998 666555444 344 5777777654
Q ss_pred ceeEEeeeccceEEEEEecCCCEEEEEecCC---eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (389)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (389)
....+..+...+....|+|++++++.++.++ .|.+||+.++... .+... .. .....|+|+|++|+..+.+
T Consensus 313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~-----~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GL-----DESPSFAPNGRMILYATTR 385 (417)
T ss_pred CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CC-----CCCceECCCCCEEEEEEeC
Confidence 2344444556677889999999999888776 7999998875432 22211 11 3445899999988887665
Q ss_pred C---cEEEEEcccceEEEeecCcCCCCCCCeeEEEE
Q 016458 319 G---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 351 (389)
Q Consensus 319 g---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 351 (389)
+ .+++.+. .+.....+ ..+.+.+..++|
T Consensus 386 ~~~~~l~~~~~-~g~~~~~~----~~~~g~~~~~~w 416 (417)
T TIGR02800 386 GGRGVLGLVST-DGRFRARL----PLGNGDVREPAW 416 (417)
T ss_pred CCcEEEEEEEC-CCceeeEC----CCCCCCcCCCCC
Confidence 4 3555554 34444444 223444555544
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.68 E-value=1.4e-14 Score=111.77 Aligned_cols=157 Identities=17% Similarity=0.325 Sum_probs=108.3
Q ss_pred EEEEEeeCCCcEEEEeeC---------CCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-E-eeCCC
Q 016458 162 SCCQYVPDEDTHLITSSG---------DQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-S-GSCDS 229 (389)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~-~~~dg 229 (389)
..+.|+++|+.+++.... -|...+|.++.. .....+. ....++|.+++|+| +++.|+ + |..++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~----l~~~~~I~~~~WsP-~g~~favi~g~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE----LKKEGPIHDVAWSP-NGNEFAVIYGSMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee----ccCCCceEEEEECc-CCCEEEEEEccCCc
Confidence 357788888655555441 133455554222 2222221 23455799999999 555543 3 44678
Q ss_pred ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec---CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458 230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (389)
Q Consensus 230 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (389)
.|.+||++ ...+..+ +...++.+.|+|+|++|++++. .|.|.+||.++.+.+...... .++.++|+
T Consensus 84 ~v~lyd~~--~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-------~~t~~~Ws 152 (194)
T PF08662_consen 84 KVTLYDVK--GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-------DATDVEWS 152 (194)
T ss_pred ccEEEcCc--ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-------cEEEEEEc
Confidence 99999997 3555555 3567889999999999999874 467999999977776654321 27899999
Q ss_pred CCCCEEEEEec------CCcEEEEEcccceEEEee
Q 016458 307 ISGRLLFAGYS------NGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 307 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~ 335 (389)
|+|+++++++. |+.++||+.. |+.+...
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 99999999864 6789999984 6655544
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.68 E-value=1.7e-12 Score=110.58 Aligned_cols=273 Identities=15% Similarity=0.170 Sum_probs=170.4
Q ss_pred cCcEEEEEEcCCCCeEEEEec----CCcEEEEeCCCC--C--eeEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEEe
Q 016458 67 AGKVYSLDWTSERNRIVSASQ----DGRLIVWNALTS--Q--KTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFN 137 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~----dg~v~iw~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~ 137 (389)
......++++|++++|.++.. +|.|..|++... + .+............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345677999999999988876 578999988764 2 33334434556778999999999988864 89999999
Q ss_pred CCCCCCCCCCCcce-eee----------cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe--eEEEecCcccCC
Q 016458 138 LNSPTDKDGNLPVS-RML----------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--RTSVFGGEFQSG 204 (389)
Q Consensus 138 ~~~~~~~~~~~~~~-~~~----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~ 204 (389)
+..... .... ... ........++.++|++..++++.-....|.+|++.... ..... .....
T Consensus 116 l~~~g~----l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~--~~~~~ 189 (345)
T PF10282_consen 116 LDDDGS----LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD--SIKVP 189 (345)
T ss_dssp ECTTSE----EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE--EEECS
T ss_pred ccCCcc----cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee--ccccc
Confidence 987321 1111 111 01234567899999985555555556789999997765 22211 11135
Q ss_pred CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee---EEeee------ccceEEEEEecCCCEEEEEe-cCCeE
Q 016458 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR---TFHGH------EGDVNTVKFFPDGNRFGTGS-DDGTC 274 (389)
Q Consensus 205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~------~~~i~~~~~~~~~~~l~~~~-~dg~i 274 (389)
.....+.+.|+|+...++++...++.|.++++......+. ..... ......++++|||++|+++. .++.|
T Consensus 190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 5667899999994444555666688899999883222221 22111 12467899999999987765 56789
Q ss_pred EEEECCC--CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEc--ccceEEEeecCcCCCCCCCeeEE
Q 016458 275 RLFDIRT--GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDT--LLAKVVLNLGSLQNSHEGRITCL 349 (389)
Q Consensus 275 ~i~d~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~~~v~~~ 349 (389)
.+|++.. +.....-.... .......++++|+|++|++++. ++.|.+|++ .+|.....-. ...-....||
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~---~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~---~~~~~~p~ci 343 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPT---GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS---SVPIPSPVCI 343 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEE---SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE---EEESSSEEEE
T ss_pred EEEEEecCCCceEEEEEEeC---CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc---cccCCCCEEE
Confidence 9999943 33222111111 1123689999999999998874 568999876 4565544331 1123345666
Q ss_pred EE
Q 016458 350 GL 351 (389)
Q Consensus 350 ~~ 351 (389)
.|
T Consensus 344 ~f 345 (345)
T PF10282_consen 344 VF 345 (345)
T ss_dssp EE
T ss_pred eC
Confidence 65
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.2e-13 Score=121.53 Aligned_cols=234 Identities=14% Similarity=0.120 Sum_probs=144.5
Q ss_pred cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-C--CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-D--SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (389)
Q Consensus 90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (389)
.+.++|..... ...+......+....|+|+|+.|+..+. + ..|.+||+.++.. ..+....+......|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--------~~lt~~~g~~~~~~w 269 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--------EKVTSFPGINGAPRF 269 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--------EEecCCCCCcCCeeE
Confidence 56667765443 3445556677889999999999887644 2 3588888876431 111212233346799
Q ss_pred eeCCCcEEEEeeCCCe--EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-EeeCCCc--eEEEeCCCCCc
Q 016458 167 VPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDST--ARLWDTRVASR 241 (389)
Q Consensus 167 ~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~ 241 (389)
+|++..++++.+.+|. |.++|+.+++..... .+........|+| +++.++ +...++. |+++|+.++ +
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt------~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g-~ 341 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALTRIT------RHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASG-K 341 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc------cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC-C
Confidence 9999666666677775 888898877654332 3344567789999 555554 4444444 556676654 2
Q ss_pred ceeEEeeeccceEEEEEecCCCEEEEEecC-C--eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (389)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (389)
...+..........+|+|||++|+..+.+ + .|.++|+.++.... +.... . .....|+|+|++|+..+.+
T Consensus 342 -~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~-----d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 342 -VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-L-----DESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred -EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-C-----CCCceECCCCCEEEEEEec
Confidence 23332222233457899999998876653 3 46667887765432 22211 1 1234799999987765543
Q ss_pred -C--cEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458 319 -G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 319 -g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
| .+++++. ++.....+ ..+.+.+...+|+|
T Consensus 414 ~g~~~l~~~~~-~G~~~~~l----~~~~g~~~~p~Wsp 446 (448)
T PRK04792 414 QGKQVLAAVSI-DGRFKARL----PAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEEEEEEC-CCCceEEC----cCCCCCcCCCccCC
Confidence 3 3677776 45555555 34556677788887
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.66 E-value=9.9e-14 Score=107.06 Aligned_cols=276 Identities=15% Similarity=0.114 Sum_probs=183.4
Q ss_pred CCcEEEEeCCCCCeeE---EEeeCCCcEEEEEECC---CCc-EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccc
Q 016458 88 DGRLIVWNALTSQKTH---AIKLPCAWVMTCAFSP---TGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY 160 (389)
Q Consensus 88 dg~v~iw~~~~~~~~~---~~~~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
-|.+.+|++.+.+... ........+..+.|.- +|. .++-+...|.|.+|........ ..+......+-....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss-~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS-VHLRGLSSKKISVVE 123 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee-eeecccchhhhhhee
Confidence 4678899887765443 1223345577777753 444 5667778899999987653211 000001111111113
Q ss_pred eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEE--EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC
Q 016458 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238 (389)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 238 (389)
..++.|++.+ ..++++..+|.+.+-+........ .. +.|.-++..+.|+..+++++++|+.|+.+..||+|.
T Consensus 124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~w-----k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTW-----KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccc-----cccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 4577888887 568888899999976665554433 44 689999999999988889999999999999999996
Q ss_pred CCcceeE-EeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCC-CceeeEeeccCCCCCCCCeeEEEeCCCCC--EEE
Q 016458 239 ASRAVRT-FHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGR--LLF 313 (389)
Q Consensus 239 ~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~ 313 (389)
+...+.. .+.|...|.+|.-+| .+.+|++|+.|-.|++||.++ ++++..-... +.|..+..+|.-. .|+
T Consensus 198 p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~------GGVWRi~~~p~~~~~lL~ 271 (339)
T KOG0280|consen 198 PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG------GGVWRIKHHPEIFHRLLA 271 (339)
T ss_pred CcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc------cceEEEEecchhhhHHHH
Confidence 5444433 566889999999887 678999999999999999995 4444433222 3499999998533 444
Q ss_pred EEecCCcEEEEEcccceEE-EeecCcCCCCCCCeeEEEECCCCCeEEeee-CCCeeE-EeecceecccCcc
Q 016458 314 AGYSNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLK-VNLGFWRVQEGAL 381 (389)
Q Consensus 314 ~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-i~~~~W~~~~~~~ 381 (389)
++-.+| ..|-+.+.+... .........|.+-+..-.|.....+|+|++ .|..++ + |-.-++..
T Consensus 272 ~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~----Wl~~t~~~ 337 (339)
T KOG0280|consen 272 ACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQL----WLHITGEP 337 (339)
T ss_pred HHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeee----eeeccCCc
Confidence 444443 666666543221 111111267777777777865556788865 477755 6 87776654
No 245
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=8.9e-14 Score=116.40 Aligned_cols=284 Identities=15% Similarity=0.196 Sum_probs=172.3
Q ss_pred EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-----------CCcEEEEeC
Q 016458 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-----------DSVCSIFNL 138 (389)
Q Consensus 70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~vw~~ 138 (389)
=+-+.|||.|.||+|--.-| |.+|--.+-..++.+..+ .|.-+.|||+.++|++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC--CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35689999999999988876 889976666666655433 4899999999999998543 257999999
Q ss_pred CCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (389)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (389)
.++...... ..+......-.-..|+.++ .+++.-.. ..|.||+..+...+..- ...-..|....|+| .
T Consensus 290 ~tG~lkrsF----~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~K-----slki~gIr~FswsP-~ 357 (698)
T KOG2314|consen 290 ATGLLKRSF----PVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKK-----SLKISGIRDFSWSP-T 357 (698)
T ss_pred cccchhcce----eccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeeccc-----ccCCccccCcccCC-C
Confidence 997632111 1111111222346788886 67766555 56888887653332221 22333455555555 3
Q ss_pred CcEEEEee---------------------------------------------------------CCCceEEEeCCCCCc
Q 016458 219 SRMFVSGS---------------------------------------------------------CDSTARLWDTRVASR 241 (389)
Q Consensus 219 ~~~l~~~~---------------------------------------------------------~dg~i~i~d~~~~~~ 241 (389)
+++|+-=+ .-..+.|+.++...-
T Consensus 358 ~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI 437 (698)
T KOG2314|consen 358 SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI 437 (698)
T ss_pred cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence 33333210 001222333332222
Q ss_pred ceeEEeeeccceEEEEEecCCCEEEEEec---CCeEEEEECCC-CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE--
Q 016458 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-- 315 (389)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-- 315 (389)
++.... -...|...+|-|.|+.+++-+. ..++.+|.+.+ .......... .....+.+.|+|.|++++++
T Consensus 438 pve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 438 PVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL----DKKFANTVFWSPKGRFVVVAAL 512 (698)
T ss_pred Cceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh----cccccceEEEcCCCcEEEEEEe
Confidence 222222 3456788999999998877654 35688888874 2211111111 11237889999999988875
Q ss_pred -ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecc--eecc
Q 016458 316 -YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGF--WRVQ 377 (389)
Q Consensus 316 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~--W~~~ 377 (389)
+..|.+.++|+.......+- .......+.+.|.|.|+|++|+++-...++..+| |++.
T Consensus 513 ~s~~g~l~F~D~~~a~~k~~~----~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 513 VSRRGDLEFYDTDYADLKDTA----SPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cccccceEEEecchhhhhhcc----CccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 45789999998743222221 2223356789999999999999876655543332 5554
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=3.5e-13 Score=119.09 Aligned_cols=235 Identities=14% Similarity=0.109 Sum_probs=147.0
Q ss_pred cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (389)
Q Consensus 90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (389)
.|.++|...+. ...+..+...+....|+|+|+.|+..+.+ ..|.+|++.++.. ..+....+.+....|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--------~~l~~~~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--------EQITNFEGLNGAPAW 250 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--------EEccCCCCCcCCeEE
Confidence 47777876444 45555566778999999999998776543 3688899976541 122222334556899
Q ss_pred eeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE-EEeeCCC--ceEEEeCCCCCc
Q 016458 167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDS--TARLWDTRVASR 241 (389)
Q Consensus 167 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg--~i~i~d~~~~~~ 241 (389)
+|+|..++++...+| .|.+||+.++..... ..+........|+| +++.+ ++...+| .|+++|+..+ .
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------t~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g-~ 322 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV------TNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGG-R 322 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEEc------ccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCC-C
Confidence 999865555665555 688889988765443 23444566778999 55544 4444444 4666777655 2
Q ss_pred ceeEEeeeccceEEEEEecCCCEEEEEecC-C--eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (389)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (389)
...+...........|+|+|++|+..+.+ + .|.+||+.++.... +.... . .....|+|+|++++..+.+
T Consensus 323 -~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~-~-----~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 323 -AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTS-L-----DESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred -EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCC-C-----CCCceECCCCCEEEEEEec
Confidence 22222222233457899999999877643 3 58889998875433 22211 1 1245899999988776544
Q ss_pred -C--cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458 319 -G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (389)
Q Consensus 319 -g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (389)
| .+.++++.. .....+ ..+.+.+...+|+|-
T Consensus 395 ~g~~~l~~~~~~g-~~~~~l----~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 395 QGRGVLMLVSING-RVRLPL----PTAQGEVREPSWSPY 428 (430)
T ss_pred CCceEEEEEECCC-CceEEC----cCCCCCcCCCccCCC
Confidence 2 467777743 333344 334556677778763
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.64 E-value=6.1e-14 Score=108.19 Aligned_cols=205 Identities=16% Similarity=0.195 Sum_probs=149.5
Q ss_pred CcEEEEEEcC---CCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCC------CcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458 68 GKVYSLDWTS---ERN-RIVSASQDGRLIVWNALTSQKTHAIKLPC------AWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (389)
Q Consensus 68 ~~v~~~~~~~---~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (389)
..+..+.|.. +|. .++-+-.+|.|.++..........+.+-. ....++.|++.+..++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3466777764 444 56667778899999765544444333211 1256788999999999999999998555
Q ss_pred CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeC
Q 016458 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
.... .+...+..+.|.-+++...|+...++++++|+.|+.+..||++.. +.+..- ...|...|.++.-+|
T Consensus 150 ~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n----~kvH~~GV~SI~ss~ 220 (339)
T KOG0280|consen 150 ETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN----SKVHTSGVVSIYSSP 220 (339)
T ss_pred ccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec----ceeeecceEEEecCC
Confidence 5432 223445788999999999999988899999999999999999933 333321 257889999999999
Q ss_pred CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC-CEEEEEecCCeEEEEECCCC
Q 016458 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTG 282 (389)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~ 282 (389)
+.+.++++|+.|-.|++||.|+..+++..-. -.+.|..+.++|.- ..++.++.-.-.++-+....
T Consensus 221 ~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 221 PKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred CCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 8999999999999999999997767765543 34789999999932 23333344344566665544
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.63 E-value=2.6e-11 Score=100.85 Aligned_cols=266 Identities=10% Similarity=0.063 Sum_probs=169.3
Q ss_pred CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC----------CCcEEEEeCCCCCCCCCCCcceeeeccc-
Q 016458 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL----------DSVCSIFNLNSPTDKDGNLPVSRMLSGH- 157 (389)
Q Consensus 89 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~~- 157 (389)
++|.+.|..+++.+..+.....+-. + ++|+++.|+++.. +..|.+||..+.+ ....+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-------~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-------PIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-------EEeEEccCC
Confidence 8999999999999988886654443 4 9999999887755 7899999999855 33333211
Q ss_pred ------ccceEEEEEeeCCCcEEEEee-C-CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458 158 ------KGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (389)
Q Consensus 158 ------~~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (389)
......++++|+|. +++... . +..|.+.|+.+++.+..+.. .+...-...+. ...+ +-+.||
T Consensus 98 ~p~~~~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v------p~~~~vy~t~e-~~~~--~~~~Dg 167 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV------PDCYHIFPTAN-DTFF--MHCRDG 167 (352)
T ss_pred CchhhccCccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC------CCCcEEEEecC-CccE--EEeecC
Confidence 12334678999984 555443 4 89999999999999988732 22222222221 2222 233456
Q ss_pred ceEEEeCCCCCcce-eE---Eeeeccce-EEEEEec-CCCEEEEEecCCeEEEEECCCCc-----eeeEeeccCC--CCC
Q 016458 230 TARLWDTRVASRAV-RT---FHGHEGDV-NTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH-----QLQVYYQQHG--ENE 296 (389)
Q Consensus 230 ~i~i~d~~~~~~~~-~~---~~~~~~~i-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~--~~~ 296 (389)
......+....+.. .. +.....++ ..-.|.+ +|+++.+... |.|.+.|+.... ....+..... .-.
T Consensus 168 ~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr 246 (352)
T TIGR02658 168 SLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR 246 (352)
T ss_pred ceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccC
Confidence 55554444332211 11 11100000 0014456 8887777766 999999964432 2222211100 001
Q ss_pred CCCeeEEEeCCCCCEEEEEec----------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC-eEEeee-CC
Q 016458 297 IPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS-WD 364 (389)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d 364 (389)
...+.-++++++++.+++... .+.|.++|..+++.+..+. -...+..++++||++ +|++.. .+
T Consensus 247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-----vG~~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-----LGHEIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-----CCCceeeEEECCCCCeEEEEeCCCC
Confidence 122445999999998888431 2479999999999999884 234789999999999 877666 57
Q ss_pred CeeEEeecceecccCcccC
Q 016458 365 TNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 365 g~i~i~~~~W~~~~~~~~~ 383 (389)
+.|.+ .|..+++...
T Consensus 322 ~~VsV----iD~~t~k~i~ 336 (352)
T TIGR02658 322 KTLYI----FDAETGKELS 336 (352)
T ss_pred CcEEE----EECcCCeEEe
Confidence 88999 9999987653
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.63 E-value=3.3e-13 Score=121.07 Aligned_cols=194 Identities=18% Similarity=0.241 Sum_probs=156.5
Q ss_pred EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC----cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA----WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (389)
Q Consensus 70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (389)
|....+..+...++.++.++.+.+||...+.....+..... ...-+-++++.-++++|+.-+.|.+|+.....
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn--- 166 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN--- 166 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC---
Confidence 44444555667889999999999999988777666554432 22334457788899999999999999998322
Q ss_pred CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (389)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (389)
....+.+|.+.|..+.|+.+| .++++.+.|.++++|++++.+..... .-+|...+..+++.| + .++++
T Consensus 167 ----~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~----~fgHsaRvw~~~~~~-n--~i~t~ 234 (967)
T KOG0974|consen 167 ----KPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCT----GFGHSARVWACCFLP-N--RIITV 234 (967)
T ss_pred ----CcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCcc----cccccceeEEEEecc-c--eeEEe
Confidence 122688999999999999998 79999999999999999998776621 168999999999998 4 89999
Q ss_pred eCCCceEEEeCCCCCcceeEEeeecc-ceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458 226 SCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 226 ~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (389)
+.|-+.++|+... ..+..+..|.. .+..++..++...+++++.||.+++||+.
T Consensus 235 gedctcrvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 235 GEDCTCRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ccceEEEEEeccc--ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 9999999997663 45557777765 68999999999999999999999999874
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.61 E-value=3.7e-12 Score=105.85 Aligned_cols=303 Identities=15% Similarity=0.130 Sum_probs=197.6
Q ss_pred cccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC
Q 016458 50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL 129 (389)
Q Consensus 50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 129 (389)
..|.+........+..-.-++..++|||.|.+|++....| |.+|.-.....+..+.. ..|..+.|+|++++|.+-..
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeeec--CCceecccCcccceeeeecc
Confidence 3444444444444444566899999999999999887765 99999887775555543 35899999999999998654
Q ss_pred CC---------------cEEEEeCCCCCCC-------CC--CCcce--------------eeeccc--------------
Q 016458 130 DS---------------VCSIFNLNSPTDK-------DG--NLPVS--------------RMLSGH-------------- 157 (389)
Q Consensus 130 dg---------------~i~vw~~~~~~~~-------~~--~~~~~--------------~~~~~~-------------- 157 (389)
.+ .+.+||..++... .. .++.. ..+.-|
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l 171 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL 171 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhc
Confidence 43 4899999875410 00 01000 011111
Q ss_pred -ccceEEEEEeeCCC-cEEEE-----eeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee----
Q 016458 158 -KGYVSCCQYVPDED-THLIT-----SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS---- 226 (389)
Q Consensus 158 -~~~v~~~~~~~~~~-~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---- 226 (389)
...|....|+|.++ ..|+. .+.++.+++|.+..+..+..- .-....-..+.|++ .++++++-.
T Consensus 172 r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk-----~lfk~~~~qLkW~~-~g~~ll~l~~t~~ 245 (561)
T COG5354 172 RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK-----NLFKVSGVQLKWQV-LGKYLLVLVMTHT 245 (561)
T ss_pred cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee-----eeEeecccEEEEec-CCceEEEEEEEee
Confidence 13456677777632 22232 456788999998876665544 22333345677887 455444311
Q ss_pred -------CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458 227 -------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (389)
Q Consensus 227 -------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (389)
....++|++++.. .+.....-.++|...+|.|.++.+++.+ .+-.+.++|++.. ....+.. ..
T Consensus 246 ksnKsyfgesnLyl~~~~e~--~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe-~~---- 317 (561)
T COG5354 246 KSNKSYFGESNLYLLRITER--SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE-QK---- 317 (561)
T ss_pred ecccceeccceEEEEeeccc--ccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCC-cc----
Confidence 1356888888843 3333335678999999999888776554 7888999999865 3333322 21
Q ss_pred CCeeEEEeCCCCCEEEEEec---CCcEEEEEcccceEEE-eecCcCCCCCCCeeEEEECCCCCeEEeee------CCCee
Q 016458 298 PHVTSIAFSISGRLLFAGYS---NGDCYVWDTLLAKVVL-NLGSLQNSHEGRITCLGLSADGSALCTGS------WDTNL 367 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i 367 (389)
-+.+.|+|.+++++.++- .|.+.+||........ .+ .+. ..+-+.|+||++++.+.. .|..+
T Consensus 318 --rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~----~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i 389 (561)
T COG5354 318 --RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF----NGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSI 389 (561)
T ss_pred --cccccccCcccEEEEecCCccccceEEeccCCceEEEEEe----ecC--CceEeeccCCceEEEecCCCcccccCcce
Confidence 367889999999888655 4689999987665554 44 222 334567999999988765 46778
Q ss_pred EEeecceecccCcc
Q 016458 368 KVNLGFWRVQEGAL 381 (389)
Q Consensus 368 ~i~~~~W~~~~~~~ 381 (389)
.| |++...+.
T Consensus 390 ~l----~~v~g~~~ 399 (561)
T COG5354 390 KL----WDVYGAKV 399 (561)
T ss_pred EE----EEecCchh
Confidence 88 99876544
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.61 E-value=5.1e-13 Score=112.79 Aligned_cols=191 Identities=15% Similarity=0.216 Sum_probs=151.0
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC---CCcEEEEEE------CC--------------CCcEEEEecCCCc
Q 016458 76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAF------SP--------------TGQSVACGGLDSV 132 (389)
Q Consensus 76 ~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~---~~~v~~~~~------~~--------------~~~~l~~~~~dg~ 132 (389)
.|...++|....||.+++|+...++....+... .+..++..| +| +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 345679999999999999999988877666432 123334443 22 2356788899999
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
|.+|++..++ +.....-..|.+.|.++.++.+- ..|.+++.|+.+..|+.........+ ......+.++
T Consensus 82 v~~ys~~~g~-----it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~-----~~~~~~~~sl 150 (541)
T KOG4547|consen 82 VLLYSVAGGE-----ITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIW-----KEQKPLVSSL 150 (541)
T ss_pred EEEEEecCCe-----EEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeee-----ccCCCccceE
Confidence 9999998755 22333345799999999998876 68999999999999999999999988 6778889999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC-----CCEEEEEe-cCCeEEEEECCC
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-----GNRFGTGS-DDGTCRLFDIRT 281 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~-~dg~i~i~d~~~ 281 (389)
+++| ++..+++++ +.|.+||+++. +.+..+.+|.++|+++.|--+ |.+++++. .+..+.+|-+..
T Consensus 151 ~is~-D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 151 CISP-DGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEcC-CCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999 688888877 78999999998 899999999999999999876 66666543 455577776654
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.1e-12 Score=111.69 Aligned_cols=240 Identities=13% Similarity=0.108 Sum_probs=144.3
Q ss_pred cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE---EEecCCC--cEEEEeCCCCCCCCCCCcceeeecccccceEEE
Q 016458 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV---ACGGLDS--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC 164 (389)
Q Consensus 90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 164 (389)
.|.+.|...+.. ..+.........-+|+|||+.+ ++...+| .|.+.++.++.. ..+....+.....
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--------~~lt~~~g~~~~p 236 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--------KKILALQGNQLMP 236 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--------eEeecCCCCccce
Confidence 566777654443 3444455567778999999752 2444443 577778776431 1222233444567
Q ss_pred EEeeCCCcEEEEeeCCC----eEEEEeCCCC---eeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-EeeCCCceEEE--
Q 016458 165 QYVPDEDTHLITSSGDQ----TCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLW-- 234 (389)
Q Consensus 165 ~~~~~~~~~l~~~~~dg----~i~iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~-- 234 (389)
.|+|||..++++...+| .+..|++..+ ...... ..........+|+| +++.|+ +...+|...+|
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-----~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-----NEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-----cCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence 99999965555543333 3445776653 222222 12223346789999 666555 44456655555
Q ss_pred eCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC---CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (389)
Q Consensus 235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (389)
++.........+..+...+....|+|||+.|+..+.+ ..|.+||+.+++..... .... .+....|+|||++
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~-----~~~~p~wSpDG~~ 384 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPE-----NKESPSWAIDSLH 384 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCC-----CccceEECCCCCE
Confidence 4432223344455455567789999999998876543 46999999887654332 2111 2567899999998
Q ss_pred EEEEec---CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 312 LFAGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 312 l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
|+.... ...|+++|+..++..... ...+.+...+|+|-.
T Consensus 385 L~f~~~~~g~~~L~~vdl~~g~~~~Lt-----~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 385 LVYSAGNSNESELYLISLITKKTRKIV-----IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEee-----cCCCcccCceecCCC
Confidence 875433 346888998877654433 234456677888753
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.60 E-value=2.1e-11 Score=101.39 Aligned_cols=263 Identities=14% Similarity=0.119 Sum_probs=166.8
Q ss_pred CcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEec----------CCcEEEEeCCCCCeeEEEeeCCC-------c
Q 016458 49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ----------DGRLIVWNALTSQKTHAIKLPCA-------W 111 (389)
Q Consensus 49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~----------dg~v~iw~~~~~~~~~~~~~~~~-------~ 111 (389)
....+....+...++..-..+-- + ++||++.|+++.. +..|.+||..+.+.+..+..... .
T Consensus 29 v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 29 VYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred EEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence 44556666777777665444433 4 9999998877665 78999999999999998886433 2
Q ss_pred EEEEEECCCCcEEEEec-C-CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 112 VMTCAFSPTGQSVACGG-L-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 112 v~~~~~~~~~~~l~~~~-~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
...++++|+|++|++.. . +..|.+.|+.+++ ....+.- .+...-...++ .-+.+-+.||......+.
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-------vv~ei~v-p~~~~vy~t~e---~~~~~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-------FVRMMDV-PDCYHIFPTAN---DTFFMHCRDGSLAKVGYG 175 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCc-------EEEEEeC-CCCcEEEEecC---CccEEEeecCceEEEEec
Confidence 34789999999999776 3 6899999999865 3333322 11111111111 112233344444443332
Q ss_pred CCeeEEEecCcccCC-----CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC----cceeEEee-------eccce
Q 016458 190 TGLRTSVFGGEFQSG-----HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHG-------HEGDV 253 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~-------~~~~i 253 (389)
.......-....... ...+ .+.+.++.++.+... |.|.+.|+.... .....+.. ..+.+
T Consensus 176 ~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 176 TKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred CCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 221111110000001 1112 345546666666665 999999965431 22222111 22334
Q ss_pred EEEEEecCCCEEEEEe----------cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEe-cCCcE
Q 016458 254 NTVKFFPDGNRFGTGS----------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDC 321 (389)
Q Consensus 254 ~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i 321 (389)
.-++++|+++.+++.. ..+.|.++|..+++.+..+..... +..++++||++ +|++.+ .++.|
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~------~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE------IDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc------eeeEEECCCCCeEEEEeCCCCCcE
Confidence 4599999999988843 225799999999999988876443 78999999999 888776 57889
Q ss_pred EEEEcccceEEEee
Q 016458 322 YVWDTLLAKVVLNL 335 (389)
Q Consensus 322 ~i~d~~~~~~~~~~ 335 (389)
.++|..+++.+..+
T Consensus 325 sViD~~t~k~i~~i 338 (352)
T TIGR02658 325 YIFDAETGKELSSV 338 (352)
T ss_pred EEEECcCCeEEeee
Confidence 99999999999887
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=5.1e-11 Score=95.38 Aligned_cols=278 Identities=15% Similarity=0.181 Sum_probs=181.9
Q ss_pred cccccCcEEEEEEcCCCCeEEEEec---CCcEEEEeCCC--CCeeE--EEeeCCCcEEEEEECCCCcEEEEecC-CCcEE
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQ---DGRLIVWNALT--SQKTH--AIKLPCAWVMTCAFSPTGQSVACGGL-DSVCS 134 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~---dg~v~iw~~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~ 134 (389)
+..+.+.++-|+|+|+++.|.++.. +|.|..|.++. |+... .......+...+++++++++++++.. .|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 4456778899999999999888765 47788887764 44332 22333445588999999999998866 58899
Q ss_pred EEeCCCCCCCCCCCcceeeecccccc----------eEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCeeEEEecCcccC
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGHKGY----------VSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQS 203 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 203 (389)
++.+.... .+........|.+. +....+.|++ +++++.. .--.|.+|++..+.....-... .
T Consensus 115 v~p~~~dG----~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~--v 187 (346)
T COG2706 115 VYPLQADG----SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAE--V 187 (346)
T ss_pred EEEcccCC----ccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccc--c
Confidence 99987632 11122222334433 7788999998 4555544 3567999999977655443322 2
Q ss_pred CCCCCeeEEEeeCCCCcEEEEe-eCCCceEEEeCCCCCcceeEEeee---------ccceEEEEEecCCCEEEEEec-CC
Q 016458 204 GHTADVLSVSISGSNSRMFVSG-SCDSTARLWDTRVASRAVRTFHGH---------EGDVNTVKFFPDGNRFGTGSD-DG 272 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~-dg 272 (389)
......+.+.|+| ++++..+. --+++|.+|........+..++.+ ......|..+|||++|+++.. ..
T Consensus 188 ~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d 266 (346)
T COG2706 188 KPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD 266 (346)
T ss_pred CCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence 4456688999999 77766554 458999999988753344443322 234667899999999988753 34
Q ss_pred eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-cEEEEEcc--cceEEEeecCcCCCCCCCeeEE
Q 016458 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTL--LAKVVLNLGSLQNSHEGRITCL 349 (389)
Q Consensus 273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~ 349 (389)
.|.+|.+........+.... ..+....+.+.|+++|++|+++..++ .|.+|... +|+.-.... ........|+
T Consensus 267 sI~~f~V~~~~g~L~~~~~~-~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~---~~~~p~Pvcv 342 (346)
T COG2706 267 SIAVFSVDPDGGKLELVGIT-PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR---YAVVPEPVCV 342 (346)
T ss_pred eEEEEEEcCCCCEEEEEEEe-ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc---ccCCCCcEEE
Confidence 78888876543322222211 11122357899999999999988754 67888664 455444332 2344455677
Q ss_pred EEC
Q 016458 350 GLS 352 (389)
Q Consensus 350 ~~~ 352 (389)
.|.
T Consensus 343 ~f~ 345 (346)
T COG2706 343 KFL 345 (346)
T ss_pred EEc
Confidence 664
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=1.5e-13 Score=123.16 Aligned_cols=275 Identities=15% Similarity=0.205 Sum_probs=184.0
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEE--EECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTC--AFSPTGQSVACGGLDSVCSIFNLNSPT 142 (389)
Q Consensus 66 h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~--~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (389)
|-+++++.++-. ++|++|.. -.|.+||+..+..+..+.... -.+... ...-.+.+++++..-+.+..=+...
T Consensus 6 ~~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~-- 80 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASN-- 80 (967)
T ss_pred ccccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhh--
Confidence 334555555544 47776654 369999998887654443211 111100 0001233444444333333322211
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe-----eEEEeeCC
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV-----LSVSISGS 217 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~ 217 (389)
.....-...+....+.-.+ ..++.++.+..+.+||...+....... +.... .-+-.++
T Consensus 81 ---------~~~~~~s~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~------~~er~~l~~~~~~g~s~- 143 (967)
T KOG0974|consen 81 ---------QIIERFSDWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQ------SDERCTLYSSLIIGDSA- 143 (967)
T ss_pred ---------hhhhhccccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcC------CCceEEEEeEEEEeccC-
Confidence 1111122333333444443 678889999999999998877666552 22221 1122333
Q ss_pred CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (389)
+.-++++|+.-+.|.+|+......+. .+.+|.+.|.++.++.||.++++.+.|.++++|++.+.+... ...-.|.
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----~~~fgHs 218 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----CTGFGHS 218 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC----ccccccc
Confidence 66788999999999999998543333 688999999999999999999999999999999999987666 2233455
Q ss_pred CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCC-CCeeEEEECCCCCeEEeeeCCCeeEEeecceec
Q 016458 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKVNLGFWRV 376 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~ 376 (389)
..+..++|.|+ .+++++.|.+.++|+.. +..+..+ ..|. ..|..++..++...++|++.||.+++ |++
T Consensus 219 aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y----~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~----~~l 287 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVY----DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKL----WDL 287 (967)
T ss_pred ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhh----hhhhhcceeEEEEcCCceEEEeeccCcchhh----hhh
Confidence 57999999988 99999999999999754 4444455 4444 57999999999999999999999999 887
Q ss_pred cc
Q 016458 377 QE 378 (389)
Q Consensus 377 ~~ 378 (389)
..
T Consensus 288 ~~ 289 (967)
T KOG0974|consen 288 NG 289 (967)
T ss_pred hc
Confidence 64
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=5.2e-13 Score=115.42 Aligned_cols=277 Identities=13% Similarity=0.133 Sum_probs=196.0
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---------------eeEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---------------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (389)
....|++|+....++|+|+.||.+++-.+.+.. .-+++.+|.+.|.-+.|+.+.+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 458899999999999999999999999775431 23456789999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
|.||-+-.+. +...-.-...++.|.+++|+.+| ..++....||.|.+=.++....... .-.......+
T Consensus 95 IiVWmlykgs-----W~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgK------eLkg~~l~hv 162 (1189)
T KOG2041|consen 95 IIVWMLYKGS-----WCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGK------ELKGQLLAHV 162 (1189)
T ss_pred EEEEeeeccc-----HHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecch------hcchheccce
Confidence 9999987643 11122223346778999999998 6788889999988876655432221 1112234578
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCC------cceeEE----eeeccceEEEEEe--------cCCCEEEEEecCCeE
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVAS------RAVRTF----HGHEGDVNTVKFF--------PDGNRFGTGSDDGTC 274 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~----~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i 274 (389)
.|++ +...++.+-..|.+.+||..... .+.... ......|..+.|. |+...|+++..+|.+
T Consensus 163 ~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~ 241 (1189)
T KOG2041|consen 163 LWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRM 241 (1189)
T ss_pred eecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCcee
Confidence 8998 77777788888999999975331 111111 1111224555553 477889999999999
Q ss_pred EEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC---------cEEEEEcccceEEEeecCcCCCCCCC
Q 016458 275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---------DCYVWDTLLAKVVLNLGSLQNSHEGR 345 (389)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~ 345 (389)
.+..-.+......+.... .+....|+++|..|++++.+. .|++|. .-|+.+.++ +.....
T Consensus 242 QiMR~eND~~Pvv~dtgm------~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtl----kvpg~~ 310 (1189)
T KOG2041|consen 242 QIMRSENDPEPVVVDTGM------KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTL----KVPGSC 310 (1189)
T ss_pred hhhhhcCCCCCeEEeccc------EeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEE----ecCCce
Confidence 988766555555444432 388999999999999987642 466665 357777777 567788
Q ss_pred eeEEEECCCCCeEEeeeCCCeeEE
Q 016458 346 ITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 346 v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
|++++|-..|-.++.+ .|+.|.+
T Consensus 311 It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred eeeeEEcCCceEEEEE-ecceEEE
Confidence 9999998777655544 3555544
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=2e-14 Score=135.33 Aligned_cols=203 Identities=17% Similarity=0.249 Sum_probs=164.8
Q ss_pred cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee-CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (389)
++.|-..|.++.-+|...+.+||+.||.|++|....++.+..++. ....|+.+.|+.+|+.+..+..||.+.+|....
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence 445566799999999999999999999999999999988877763 337899999999999999999999999999873
Q ss_pred CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee---CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (389)
......+.|+....+..|... .+++++ .++.+.+||..-......+. ..|...++++++.| .
T Consensus 2283 -------k~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~----~~H~~gaT~l~~~P-~ 2347 (2439)
T KOG1064|consen 2283 -------KPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVH----TCHDGGATVLAYAP-K 2347 (2439)
T ss_pred -------cceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceee----eecCCCceEEEEcC-c
Confidence 145667788888999999873 466554 47899999976543333332 57999999999999 8
Q ss_pred CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (389)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (389)
..+|++|+.+|.|++||++.. +..+.+.. ++ ...++++|+..|.++||++.....+..+...+
T Consensus 2348 ~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred ceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 899999999999999999976 55544443 44 56789999999999999999887777776554
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.58 E-value=1.7e-12 Score=114.72 Aligned_cols=206 Identities=17% Similarity=0.142 Sum_probs=134.8
Q ss_pred cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC---CeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (389)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 208 (389)
.|.++|..... ...+..+...+....|+|++. .++.+..+ ..|++||+.++...... .+...
T Consensus 171 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~------~~~~~ 235 (417)
T TIGR02800 171 ELQVADYDGAN--------PQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVA------SFPGM 235 (417)
T ss_pred eEEEEcCCCCC--------CEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEee------cCCCC
Confidence 57777765422 233445566788899999985 55554432 57999999988654432 34455
Q ss_pred eeEEEeeCCCCcEEEEeeCCC--ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC-C--eEEEEECCCCc
Q 016458 209 VLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGH 283 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~ 283 (389)
+.+++|+|++..++++.+.++ .|++||+.+. ....+..+........|+|+++.|+..+.. + .|+++|+.+++
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 667899994334445555544 5888888754 233444454455677999999988776543 3 58888887665
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC---cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 360 (389)
... +.... .......|+|+|++++.++.++ .|.+||+.++... .+. . ........|+|||++|+.
T Consensus 314 ~~~-l~~~~-----~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~----~-~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 314 VRR-LTFRG-----GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLT----D-TGLDESPSFAPNGRMILY 381 (417)
T ss_pred EEE-eecCC-----CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ecc----C-CCCCCCceECCCCCEEEE
Confidence 432 22211 1356789999999999887775 7899998875443 221 1 122345689999999988
Q ss_pred eeCCCe
Q 016458 361 GSWDTN 366 (389)
Q Consensus 361 ~~~dg~ 366 (389)
++.++.
T Consensus 382 ~~~~~~ 387 (417)
T TIGR02800 382 ATTRGG 387 (417)
T ss_pred EEeCCC
Confidence 877653
No 259
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.6e-14 Score=121.04 Aligned_cols=293 Identities=14% Similarity=0.165 Sum_probs=199.9
Q ss_pred eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC-------CCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC
Q 016458 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS 131 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 131 (389)
....+.||+..|.+++--.+.+-+++++.|++|++|.++. ..+..+++.|..+|..+.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3457889999999998877888999999999999998753 23567778899999999999998888765 78
Q ss_pred cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEe-eCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (389)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 210 (389)
.|++||.-.+...... ......+..+.|.|+.-. ...++++| +...+|+++|.+.......+......+....+.
T Consensus 805 giHlWDPFigr~Laq~--~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQM--EDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeecccccchhHhh--hcCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 8999997654310000 000111222334443221 12344444 678999999999988877776554456667789
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEE-EECCCCceeeEee
Q 016458 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL-FDIRTGHQLQVYY 289 (389)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~ 289 (389)
++++.+ .++.++++-.+|.|.+.|.+++ ..+..+++.+-....++- |..+.|+....|.++.+ |-..++.......
T Consensus 881 ~iaVa~-~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 881 AIAVAD-KGNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred EEEecc-CcchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 999998 8889999999999999999988 777777766555555543 55667888888889888 8876665444433
Q ss_pred ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc----ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
.+..+.+. . -.-|..+++....+.+.+|--.. ...+..+.. ....+..++++.-|-..-+..|...|
T Consensus 958 pppepahf--l-----qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~--d~f~G~lTala~LPLN~afLaGne~G 1028 (1034)
T KOG4190|consen 958 PPPEPAHF--L-----QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRP--DEFPGTLTALAPLPLNCAFLAGNEHG 1028 (1034)
T ss_pred CCCcchhh--h-----hccCceeEEeccCcEEEEEecchhhhhhhhhccccc--cccCCccceeeeccccchhhccCCCC
Confidence 32222111 1 12355677766666777774211 111111211 34456788899888777778888889
Q ss_pred eeEE
Q 016458 366 NLKV 369 (389)
Q Consensus 366 ~i~i 369 (389)
.|.+
T Consensus 1029 ~IaL 1032 (1034)
T KOG4190|consen 1029 AIAL 1032 (1034)
T ss_pred ceee
Confidence 8876
No 260
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=4.6e-14 Score=122.02 Aligned_cols=291 Identities=18% Similarity=0.188 Sum_probs=203.6
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCC--cEEEEecCCCcEEEEeCCCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPT 142 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~ 142 (389)
.+.+.++..+|.|+-+|.++.-| +.+-|+...-.....-.|. -.|-.+.|+|.. .+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45788999999999999999877 5566765543222222222 346677887743 445555556667799987643
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE-EEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT-SVFGGEFQSGHTADVLSVSISGSNSRM 221 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (389)
...+...+.+|...|+.+.|.|+.+..+++++.|..+..||+++.... ..+ ..-......++|+-.+++.
T Consensus 103 ----~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-----~~w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 103 ----SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-----SSWRSAASQVKWNYKDPNV 173 (1081)
T ss_pred ----ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-----ecccccCceeeecccCcch
Confidence 223566778999999999999999999999999999999999986433 222 3445567788998866666
Q ss_pred EEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458 222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (389)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (389)
++ .+....|++||.+.+..++..+++|...|+.++|.. ....+.+++.||+|+.||............. ...+|
T Consensus 174 la-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt----t~~pi 248 (1081)
T KOG0309|consen 174 LA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT----TNFPI 248 (1081)
T ss_pred hh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc----ccCcc
Confidence 55 456778999999999899999999999999999976 3446889999999999998764433222221 12245
Q ss_pred eEEEeCCCCCEEEE--EecCCcEEEEE---------cc-cceEEEeecCcCCCCCCCeeEEEECCCC----------CeE
Q 016458 301 TSIAFSISGRLLFA--GYSNGDCYVWD---------TL-LAKVVLNLGSLQNSHEGRITCLGLSADG----------SAL 358 (389)
Q Consensus 301 ~~~~~~~~~~~l~~--~~~dg~i~i~d---------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l 358 (389)
..-.+-|-|.-.++ --.+..+.+++ .. ...++..+ .+|...|..+.|-..+ -.|
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F----~GH~D~V~eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF----VGHDDVVLEFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee----cCcchHHHHHhhhhcccccCCCCccceeE
Confidence 66666665442222 11122333333 22 23566777 7999988877775422 279
Q ss_pred EeeeCCCeeEEeecceecccCc
Q 016458 359 CTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 359 ~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
+|-+.|..+++ |.+.+.-
T Consensus 325 VTWSkD~~lrl----WpI~~~i 342 (1081)
T KOG0309|consen 325 VTWSKDQTLRL----WPIDSQI 342 (1081)
T ss_pred EEeecCCceEe----eeccHHH
Confidence 99999999999 9987643
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.57 E-value=7.5e-13 Score=111.82 Aligned_cols=190 Identities=16% Similarity=0.219 Sum_probs=151.8
Q ss_pred CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee------C-------------CCCcEEEEeeCCCce
Q 016458 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS------G-------------SNSRMFVSGSCDSTA 231 (389)
Q Consensus 171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~i 231 (389)
..+++....||.+++||...++....+.+.. ...+..++..|. | .+...++-|...|.|
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccch--hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4689999999999999999998887774431 223344444442 1 144578889999999
Q ss_pred EEEeCCCCCcceeEEe--eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458 232 RLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (389)
Q Consensus 232 ~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (389)
.+|+...+ +....+. .|.+.|+++.++.+-..|.+++.|+.+..|+......+..+...... +.+++++|||
T Consensus 83 ~~ys~~~g-~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~-----~~sl~is~D~ 156 (541)
T KOG4547|consen 83 LLYSVAGG-EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL-----VSSLCISPDG 156 (541)
T ss_pred EEEEecCC-eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc-----cceEEEcCCC
Confidence 99999877 5554444 68999999999998889999999999999999998888887665544 8999999999
Q ss_pred CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC-----CCeEEe-eeCCCeeEEeecceeccc
Q 016458 310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-----GSALCT-GSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~~~dg~i~i~~~~W~~~~ 378 (389)
..+++++ +.|.+||+++++.+..+ .+|.++|.+++|..+ |.++.+ +..+..+.+ |-+..
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~f----tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~----w~v~~ 221 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVITF----TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV----WVVEK 221 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEEe----cCCCcceEEEEEEEeccccccceeeeccccccceeE----EEEEc
Confidence 9999886 57999999999999999 899999999999876 566555 444556666 87765
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=4.4e-11 Score=95.75 Aligned_cols=285 Identities=12% Similarity=0.120 Sum_probs=178.0
Q ss_pred CCcEEEEeCCCCCe-e--EEEeeCCCcEEEEEECCCCcEEEEecC---CCcEEEEeCCCCCCCCCCCcceeeecccccce
Q 016458 88 DGRLIVWNALTSQK-T--HAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV 161 (389)
Q Consensus 88 dg~v~iw~~~~~~~-~--~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v 161 (389)
+.-|++|++.+..- + ...-...+.++-++|+|+++.|.++.. +|.|..|.++... +.+...........+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~---G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD---GRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC---CeEEEeeccccCCCCC
Confidence 45699999874321 1 112234567899999999999988754 5778888887631 2222333333333444
Q ss_pred EEEEEeeCCCcEEEEeeCCCeEEEEeCCC-CeeEEE---ecCccc----CCCCCCeeEEEeeCCCCcEEEEeeC-CCceE
Q 016458 162 SCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSV---FGGEFQ----SGHTADVLSVSISGSNSRMFVSGSC-DSTAR 232 (389)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~---~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~ 232 (389)
..+++++++..++.+-...|.|.++-+.. |..... ...... ......+....+.| +++++++.+- --.|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIF 170 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEE
Confidence 78999999854444445679999999866 332222 110000 11122288889999 6666666543 45799
Q ss_pred EEeCCCCCcce---eEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCC-ceeeEeeccC----CCCCCCCeeEE
Q 016458 233 LWDTRVASRAV---RTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTG-HQLQVYYQQH----GENEIPHVTSI 303 (389)
Q Consensus 233 i~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~----~~~~~~~i~~~ 303 (389)
+|++..+.... ..+ ......+.|.|+|++++.++.+ -+++|.+|..... ..+..+.... .-....+...+
T Consensus 171 ~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 171 LYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 99998552111 112 2345678999999999987766 5899999998874 2222222111 11223357889
Q ss_pred EeCCCCCEEEEEec-CCcEEEEEcccc-eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC-eeEEeecceec--cc
Q 016458 304 AFSISGRLLFAGYS-NGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-NLKVNLGFWRV--QE 378 (389)
Q Consensus 304 ~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~~~~W~~--~~ 378 (389)
.+++||++|+++.. ...|.+|.+... ..+..+. ....+......+.|+++|++|++++.++ .|.+ +.. ++
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~-~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~v----f~~d~~T 324 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG-ITPTEGQFPRDFNINPSGRFLIAANQKSDNITV----FERDKET 324 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE-EeccCCcCCccceeCCCCCEEEEEccCCCcEEE----EEEcCCC
Confidence 99999999998854 237888877643 2222211 1134444578999999999999998764 5666 554 45
Q ss_pred Cccc
Q 016458 379 GALS 382 (389)
Q Consensus 379 ~~~~ 382 (389)
|++.
T Consensus 325 G~L~ 328 (346)
T COG2706 325 GRLT 328 (346)
T ss_pred ceEE
Confidence 6554
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.55 E-value=5.8e-12 Score=96.27 Aligned_cols=270 Identities=13% Similarity=0.052 Sum_probs=178.4
Q ss_pred cCCcEEEEeCCCCC-eeEEEeeCCCcEEEEEECC-----CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccc
Q 016458 87 QDGRLIVWNALTSQ-KTHAIKLPCAWVMTCAFSP-----TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY 160 (389)
Q Consensus 87 ~dg~v~iw~~~~~~-~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
....|-+|+..+.. .+..+- ..+.|.| ...+||.|+..|...+|...+... .......|...
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~------h~~~cd~snn~ 117 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG------HLYQCDVSNND 117 (344)
T ss_pred ceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCccc------ceeeecccccc
Confidence 44457777765543 111111 2334444 456899999999999999986431 23333344443
Q ss_pred eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC
Q 016458 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240 (389)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 240 (389)
|+-+.=..+....+..++.|.++++.++..+...... ....-.+.++++++ ++.++++.+....|..|.+....
T Consensus 118 v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-----h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~s 191 (344)
T KOG4532|consen 118 VTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-----HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDES 191 (344)
T ss_pred hhhhhhhcccccceeeccCCcceeEEEEecCccccee-----eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCcc
Confidence 3332222222345777888888888887765444333 11223488999998 88999999999999999998764
Q ss_pred cceeE--EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC--EEEEEe
Q 016458 241 RAVRT--FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGY 316 (389)
Q Consensus 241 ~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~ 316 (389)
+.+.. .......-.+..|+.....+|++..||++.|||++....+........+.+.+.+..+.|++.|. +|+..-
T Consensus 192 ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 192 EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE 271 (344)
T ss_pred ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec
Confidence 44433 22233445678899989999999999999999999877666655555566777899999998765 555555
Q ss_pred cCCcEEEEEcccceEEEeecCc---CCCCCC-CeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 317 SNGDCYVWDTLLAKVVLNLGSL---QNSHEG-RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~---~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
.-+.+.+.|++++.....+... ...|.. .|..-.|+.++..+.+.+.+...- |++...
T Consensus 272 hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae-----~ni~sr 333 (344)
T KOG4532|consen 272 HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAE-----YNILSR 333 (344)
T ss_pred CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchhhhe-----eecccc
Confidence 5678999999987665544321 123333 388888888887777776654332 666543
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.5e-12 Score=112.33 Aligned_cols=222 Identities=15% Similarity=0.158 Sum_probs=133.9
Q ss_pred eecccccCcEEEEEEcCCCCeEEEEecC-C--cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEE-ecCCCc--EE
Q 016458 61 RTLQGHAGKVYSLDWTSERNRIVSASQD-G--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC-GGLDSV--CS 134 (389)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~d-g--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~ 134 (389)
+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.... ....+.....+|+|+|+.|+. ...+|. |.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 3455566788899999999988876543 2 588889888765332 222233457899999998865 455665 77
Q ss_pred EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
++|+.++. ...+..+........|+|++..++++...++ .|.++|+.+++..... .........
T Consensus 290 ~~dl~tg~--------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt------~~g~~~~~~ 355 (448)
T PRK04792 290 VVDIATKA--------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT------FEGEQNLGG 355 (448)
T ss_pred EEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe------cCCCCCcCe
Confidence 77776543 2233334455667899999865555554444 5677788777654332 111223456
Q ss_pred EeeCCCCcEEEEee-CCC--ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC-C--eEEEEECCCCceee
Q 016458 213 SISGSNSRMFVSGS-CDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQ 286 (389)
Q Consensus 213 ~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~ 286 (389)
+|+| +++.++..+ .++ .|.++|+.++ . ...+... .......|+|+|+.|+..+.+ | .+.+++.. +....
T Consensus 356 ~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g-~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~ 430 (448)
T PRK04792 356 SITP-DGRSMIMVNRTNGKFNIARQDLETG-A-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKA 430 (448)
T ss_pred eECC-CCCEEEEEEecCCceEEEEEECCCC-C-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence 8999 555555544 344 4555677655 2 2233222 122345799999988776543 3 37777764 44444
Q ss_pred EeeccCCCCCCCCeeEEEeCC
Q 016458 287 VYYQQHGENEIPHVTSIAFSI 307 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~ 307 (389)
.+..... .+...+|+|
T Consensus 431 ~l~~~~g-----~~~~p~Wsp 446 (448)
T PRK04792 431 RLPAGQG-----EVKSPAWSP 446 (448)
T ss_pred ECcCCCC-----CcCCCccCC
Confidence 4433222 255667766
No 265
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.54 E-value=5.7e-13 Score=101.18 Aligned_cols=207 Identities=14% Similarity=0.180 Sum_probs=131.7
Q ss_pred ecccccC-cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe------------eEEEeeCCCcEEEEEECCCCcEEEEec
Q 016458 62 TLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQK------------THAIKLPCAWVMTCAFSPTGQSVACGG 128 (389)
Q Consensus 62 ~l~~h~~-~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~ 128 (389)
...+|.+ .|+.+.++.+ ..|+++..++.+..+....+.+ ...+..+.++-.+-+.+-.++.+++++
T Consensus 30 ~i~~~~d~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 30 EIMQHADVKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred hcccccceEEEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecC
Confidence 3444444 3677777654 3677777776666655433322 222223333222223334567899999
Q ss_pred CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-----CCeEEEEeCCCCeeEEEecCcccC
Q 016458 129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVLWDITTGLRTSVFGGEFQS 203 (389)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~ 203 (389)
.||.+.+++.+.... .......-...-.+.++...+ +.+.++.. -+..+.|+++........ .
T Consensus 109 ~dg~~~v~s~~~~~~------~~~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-----~ 176 (319)
T KOG4714|consen 109 ADGSLAVFSTDKDLA------LMSRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPS-----K 176 (319)
T ss_pred CCceEEEEechHHHh------hhhhcccccccccccceeecc-cEEecCCcceEeeccceeeeccccccccccc-----c
Confidence 999999999875211 111111111112233344443 33333321 233455555443322222 2
Q ss_pred CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCC
Q 016458 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRT 281 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~ 281 (389)
.....|.+++-+|...+++++|+.||.+.+||.++...+...+..|+.++..+-|+| ++..|++++.||.+..||..+
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 333449999999988899999999999999999998778888899999999999999 778999999999999999765
No 266
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.5e-12 Score=111.30 Aligned_cols=292 Identities=17% Similarity=0.149 Sum_probs=202.5
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC------------cEEEEecCCCcEEEE
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG------------QSVACGGLDSVCSIF 136 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~i~vw 136 (389)
.-.++.|+|.| ++|-|+.. .|.+-|..+.+.+..+..|...|+.+.|.|-. -.||++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 36789999987 77777764 79999999999999999999999999998732 357788889999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCC---CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE---DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
|+.... ....+..|..++..++|.+.. ...|++-....+|.+|+..+|+..... ........|+.
T Consensus 95 d~~~~s-------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-----~ys~~iLs~f~ 162 (1062)
T KOG1912|consen 95 DFVLAS-------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY-----DYSHEILSCFR 162 (1062)
T ss_pred Eehhhh-------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc-----ccCCcceeeee
Confidence 998754 456677888999999998743 246777778899999999999998887 44555667799
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCC------CcceeEEeeecc------------c-------------eEEEEEecCC
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVA------SRAVRTFHGHEG------------D-------------VNTVKFFPDG 262 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~------------~-------------i~~~~~~~~~ 262 (389)
+.|.+...+..-+..|.+.+-+.-.. .+.++.-..|.. . .-.++|+|.-
T Consensus 163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~ 242 (1062)
T KOG1912|consen 163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW 242 (1062)
T ss_pred eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence 99988888877777888777764321 112222222221 0 1135778866
Q ss_pred CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC--CEEEEEecCCcEEEEEcccceEEEeec--Cc
Q 016458 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG--RLLFAGYSNGDCYVWDTLLAKVVLNLG--SL 338 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~ 338 (389)
+.++.......+.++|++-..++.......+. +.-+.+-|++ ..|++...||.+.+|-.+......+.. .+
T Consensus 243 rn~lfi~~prellv~dle~~~~l~vvpier~~-----akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l 317 (1062)
T KOG1912|consen 243 RNILFITFPRELLVFDLEYECCLAVVPIERGG-----AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL 317 (1062)
T ss_pred hceEEEEeccceEEEcchhhceeEEEEeccCC-----cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh
Confidence 66666667788999999988888877665443 4455565654 489999999999999754311111110 00
Q ss_pred C-----------CCCCCCeeEEEECCC-CCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 339 Q-----------NSHEGRITCLGLSAD-GSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 339 ~-----------~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
. .-.+-.+...+..|. ...++.--.+|.+.+ |.+.+|+...
T Consensus 318 ~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~----w~l~~~ri~~ 370 (1062)
T KOG1912|consen 318 SMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTF----WQLSNGRIHL 370 (1062)
T ss_pred ccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHH----HhhhcCCcCc
Confidence 0 001112222233343 444555556788888 9999887654
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.52 E-value=4.1e-11 Score=104.18 Aligned_cols=271 Identities=15% Similarity=0.142 Sum_probs=169.3
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
+..+++++.+|.|..+|..+|+.+............... ++..+++++.+|.+..+|..+++. .-.... .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~-------~W~~~~-~ 134 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKE-------LWRAKL-S 134 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcE-------eeeecc-C
Confidence 568888899999999999999998877655432222222 467788888999999999887551 111111 1
Q ss_pred cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 238 (389)
+.+.+.....+ ..++.++.+|.|..+|..+++.+..+.............+.... + ..++.+..+|.+..+|.++
T Consensus 135 ~~~~~~p~v~~--~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~t 209 (377)
T TIGR03300 135 SEVLSPPLVAN--GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQT 209 (377)
T ss_pred ceeecCCEEEC--CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccC
Confidence 22221111122 35777888999999999999988776321100000000111222 2 3667788889999999987
Q ss_pred CCcceeEEeee-cc---c---eEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458 239 ASRAVRTFHGH-EG---D---VNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (389)
Q Consensus 239 ~~~~~~~~~~~-~~---~---i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (389)
+ +.+-..... .. . ...+.-+| .+..+++++.+|.+..||..+++......... ..... ..+
T Consensus 210 G-~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-------~~~p~--~~~ 279 (377)
T TIGR03300 210 G-QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-------YQGPA--VDD 279 (377)
T ss_pred C-CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-------ccCce--EeC
Confidence 7 333222110 00 0 00111111 35678888899999999999998766553211 11222 246
Q ss_pred CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
..+++++.+|.++.+|..+++.+...... ......+... .+..|++++.+|.+.+ ++..+|++..
T Consensus 280 ~~vyv~~~~G~l~~~d~~tG~~~W~~~~~---~~~~~ssp~i--~g~~l~~~~~~G~l~~----~d~~tG~~~~ 344 (377)
T TIGR03300 280 NRLYVTDADGVVVALDRRSGSELWKNDEL---KYRQLTAPAV--VGGYLVVGDFEGYLHW----LSREDGSFVA 344 (377)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEccccc---cCCccccCEE--ECCEEEEEeCCCEEEE----EECCCCCEEE
Confidence 68888889999999999999888765211 1111222222 3568899999999999 9999998763
No 268
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.2e-11 Score=104.08 Aligned_cols=254 Identities=15% Similarity=0.192 Sum_probs=167.5
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC--cEEEE-----ecCCCcEEEEeCCCCCC
Q 016458 71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG--QSVAC-----GGLDSVCSIFNLNSPTD 143 (389)
Q Consensus 71 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~vw~~~~~~~ 143 (389)
.+..|++|..+.|- -..+.+.+|+..+.+ ...-..|...++.+.++|.+ ..+|+ .+.-+.|+||......
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~-~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~- 205 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFK-TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG- 205 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCcc-ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-
Confidence 68888888754432 234579999987633 33334566779999999863 34443 3556789999887321
Q ss_pred CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-----------CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
..... ..+.+ ....=..+.|++.+..+|+.++. ..++++.++....+...+ ...++|.++
T Consensus 206 ~~~~~-a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L------~k~GPVhdv 276 (566)
T KOG2315|consen 206 QHQPV-ANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL------LKEGPVHDV 276 (566)
T ss_pred ccchh-hhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec------CCCCCceEE
Confidence 00011 11111 12223457888877666665543 246888888844444443 567899999
Q ss_pred EeeCCCCcEEEE-eeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec---CCeEEEEECCCCceeeEe
Q 016458 213 SISGSNSRMFVS-GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGHQLQVY 288 (389)
Q Consensus 213 ~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~ 288 (389)
.|+|....+.++ |-.-..+.|||++ ..++..+ .+++=+++-|+|.|++|+.++- -|.+.+||+.+.+.+..+
T Consensus 277 ~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 277 TWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EECCCCCEEEEEEecccceEEEEcCC--CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 999944333333 4456789999988 3455444 4677889999999999998875 478999999997777766
Q ss_pred eccCCCCCCCCeeEEEeCCCCCEEEEEec------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458 289 YQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
.... .+-+.|+|||+++++++. |+.++||++ +|..+..-. .......+.|-|
T Consensus 353 ~a~~-------tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~-----f~sEL~qv~W~P 410 (566)
T KOG2315|consen 353 KAAN-------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKM-----FKSELLQVEWRP 410 (566)
T ss_pred ccCC-------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhh-----hhHhHhheeeee
Confidence 5432 467899999999999875 678999997 455444321 111456666665
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.52 E-value=4.2e-10 Score=108.42 Aligned_cols=252 Identities=15% Similarity=0.132 Sum_probs=164.6
Q ss_pred EEEEEcCC-CCeEEEEecCCcEEEEeCCCCCeeEEEee-C-------------CCcEEEEEECCCCcEEEEec-CCCcEE
Q 016458 71 YSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKL-P-------------CAWVMTCAFSPTGQSVACGG-LDSVCS 134 (389)
Q Consensus 71 ~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~~-~dg~i~ 134 (389)
..+++++. ++++++-+.++.|++||.. +..+..+.. . -.....++++++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 5567777788899999975 454443332 1 12357899999888666554 467899
Q ss_pred EEeCCCCCCCCCCCcceeeecc-----------------cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEe
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSG-----------------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 197 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 197 (389)
++|+.++. ...+.+ .-.....++++|++..++++.+.++.|++||..++......
T Consensus 650 ~id~~~~~--------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 650 EIDFVNET--------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred EEecCCCE--------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence 99986532 111100 01234678999965577888888999999999887543221
Q ss_pred cCccc---------CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE------------Eee--------
Q 016458 198 GGEFQ---------SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT------------FHG-------- 248 (389)
Q Consensus 198 ~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~-------- 248 (389)
..... ...-.....++++|+.+.++++.+.++.|++||+.++...+.. +..
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 10000 0111345679999944446677777899999998865221100 000
Q ss_pred eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC--------CCCCCCCeeEEEeCCCCCEEEEEecCCc
Q 016458 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFAGYSNGD 320 (389)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 320 (389)
.-.....++++++|+++++-+.++.|++||..++.......... ..........++++++|+.+++-+.++.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 01124689999999988888899999999998765543322110 0111224678999999998888888999
Q ss_pred EEEEEcccceE
Q 016458 321 CYVWDTLLAKV 331 (389)
Q Consensus 321 i~i~d~~~~~~ 331 (389)
|++||+.+++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999988764
No 270
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.4e-11 Score=107.43 Aligned_cols=215 Identities=13% Similarity=0.086 Sum_probs=136.2
Q ss_pred cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC--CeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (389)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v 209 (389)
.|.++|.+... ...+..+...+....|+|+|..++++...+ ..|.+||+.++...... ......
T Consensus 180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~------~~~g~~ 245 (430)
T PRK00178 180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT------NFEGLN 245 (430)
T ss_pred EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc------CCCCCc
Confidence 36677776532 233445667789999999985444444333 46999999888654432 223345
Q ss_pred eEEEeeCCCCcEEE-EeeCCC--ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CC--eEEEEECCCCc
Q 016458 210 LSVSISGSNSRMFV-SGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGH 283 (389)
Q Consensus 210 ~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~ 283 (389)
....|+| +++.|+ +...+| .|++||+.++ ....+..+........|+|||+.|+..+. +| .|+++|+.+++
T Consensus 246 ~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 246 GAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASR--QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred CCeEECC-CCCEEEEEEccCCCceEEEEECCCC--CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 5789999 555554 555555 5888898865 23445555555677899999998876653 33 57788887776
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-C--cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 360 (389)
....... .. ......|+|+|++|+..+.+ + .|.++|+.+++.. .+. .. .......|+|||+.++.
T Consensus 323 ~~~lt~~-~~-----~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt---~~--~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 323 AERVTFV-GN-----YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT---DT--SLDESPSVAPNGTMLIY 390 (430)
T ss_pred EEEeecC-CC-----CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc---CC--CCCCCceECCCCCEEEE
Confidence 4333211 11 13457899999998877643 3 5888999887643 332 11 12234589999999887
Q ss_pred eeCC-C--eeEEeecceecccC
Q 016458 361 GSWD-T--NLKVNLGFWRVQEG 379 (389)
Q Consensus 361 ~~~d-g--~i~i~~~~W~~~~~ 379 (389)
.+.+ | .+.+ +++..+
T Consensus 391 ~~~~~g~~~l~~----~~~~g~ 408 (430)
T PRK00178 391 ATRQQGRGVLML----VSINGR 408 (430)
T ss_pred EEecCCceEEEE----EECCCC
Confidence 7654 3 3555 666543
No 271
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.6e-11 Score=107.35 Aligned_cols=223 Identities=13% Similarity=0.105 Sum_probs=132.6
Q ss_pred cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCc--EEEEeeCC--CeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT--HLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
.|.+.|.+... ...+......+..-.|+|+|.. ++++...+ ..|.+.++.+++..... ....
T Consensus 166 ~l~~~d~dG~~--------~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt------~~~g 231 (428)
T PRK01029 166 ELWSVDYDGQN--------LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL------ALQG 231 (428)
T ss_pred eEEEEcCCCCC--------ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee------cCCC
Confidence 56666665532 1223333445567799999855 23344444 46888899887655443 2334
Q ss_pred CeeEEEeeCCCCcEEEE-eeCCC----ceEEEeCCCC--CcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEE--
Q 016458 208 DVLSVSISGSNSRMFVS-GSCDS----TARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLF-- 277 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~-~~~dg----~i~i~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~-- 277 (389)
......|+| +++.|+. ...+| .+.+|++... .........+.......+|+|||+.|+..+ .+|...+|
T Consensus 232 ~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 232 NQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CccceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 455689999 6655554 43333 3344666542 122222222223446789999999887665 45654444
Q ss_pred ECCC-CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458 278 DIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 278 d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
++.. +.....+.... ..+....|+|||+.|+....+ ..|.+||+.+++..... .....+....|+|
T Consensus 311 ~~~~~g~~~~~lt~~~-----~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-----~~~~~~~~p~wSp 380 (428)
T PRK01029 311 QIDPEGQSPRLLTKKY-----RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-----TSPENKESPSWAI 380 (428)
T ss_pred ECcccccceEEeccCC-----CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-----CCCCCccceEECC
Confidence 4432 22222232211 135678999999988876543 36999999888764332 2234567899999
Q ss_pred CCCeEEeeeC---CCeeEEeecceecccCcccC
Q 016458 354 DGSALCTGSW---DTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 354 ~~~~l~~~~~---dg~i~i~~~~W~~~~~~~~~ 383 (389)
||+.|+.... ...|.+ |++.+++...
T Consensus 381 DG~~L~f~~~~~g~~~L~~----vdl~~g~~~~ 409 (428)
T PRK01029 381 DSLHLVYSAGNSNESELYL----ISLITKKTRK 409 (428)
T ss_pred CCCEEEEEECCCCCceEEE----EECCCCCEEE
Confidence 9998875443 345666 8988876543
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.51 E-value=1.4e-10 Score=109.66 Aligned_cols=296 Identities=13% Similarity=0.098 Sum_probs=187.2
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEE----eCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVW----NALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (389)
.+.|.++.|-++...++.+..+|.|.+. +..+.. +...-.-...|.+++||||+..|+..+.++++.+.+-+-..
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 4579999999999999999999999999 443333 22233344669999999999999999989888776432100
Q ss_pred ----------C------------CC-------CCC--------cc----eeeecccccceEEEEEeeCCCcEEEEeeC--
Q 016458 143 ----------D------------KD-------GNL--------PV----SRMLSGHKGYVSCCQYVPDEDTHLITSSG-- 179 (389)
Q Consensus 143 ----------~------------~~-------~~~--------~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 179 (389)
. +. ++. .. ...+. +...-..++|-.|| .+|++.+.
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVss~~~ 231 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFAVSSVEP 231 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEEEEEEEc
Confidence 0 00 000 00 01111 33355678999998 67776654
Q ss_pred -C---CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC---CCceEEEeCCCCCcceeEEe--eec
Q 016458 180 -D---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRVASRAVRTFH--GHE 250 (389)
Q Consensus 180 -d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~--~~~ 250 (389)
. ..++||+-+ |...... ....+--.+++|.| .++++++.-. ...|.+|.-+....--..+. ...
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stS-----E~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTS-----EPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEE 304 (928)
T ss_pred CCCceeEEEEECCC-ceEEecc-----ccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCC
Confidence 2 579999966 5554443 33344456789999 8888887764 34566776442211111222 345
Q ss_pred cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcc--
Q 016458 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTL-- 327 (389)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~-- 327 (389)
..|..+.|++++..|+....|. |.+|-..+..-.......... ...+..+.|+|... .|.+.+.+|.+..+++.
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~--~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS--SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC--CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 6799999999999999987665 999998775532222221111 11245588998544 56666666766655431
Q ss_pred --cc--------eEEEee----------c---------CcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 328 --LA--------KVVLNL----------G---------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 328 --~~--------~~~~~~----------~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
.+ ..+..+ . ...-....+|.+++|++++..+++-..||.+.+ |....
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~----~~~~~ 457 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSI----YEWDL 457 (928)
T ss_pred EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEE----EEecC
Confidence 11 011111 0 000123568999999999888999999999999 66544
Q ss_pred C
Q 016458 379 G 379 (389)
Q Consensus 379 ~ 379 (389)
.
T Consensus 458 ~ 458 (928)
T PF04762_consen 458 K 458 (928)
T ss_pred C
Confidence 3
No 273
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=2.9e-13 Score=127.72 Aligned_cols=228 Identities=16% Similarity=0.284 Sum_probs=166.3
Q ss_pred eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE
Q 016458 106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (389)
Q Consensus 106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 185 (389)
..+-..|.++.-+|...+.++|+.||.|++|....+.. . +.....+ ...|+.+.|+.+| +.+..+..||.+.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~----v-~~~rt~g-~s~vtr~~f~~qG-nk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ----V-VCFRTAG-NSRVTRSRFNHQG-NKFGIVDGDGDLSL 2277 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe----E-EEeeccC-cchhhhhhhcccC-CceeeeccCCceee
Confidence 34446688999999999999999999999999987541 1 1222223 3889999999998 67889999999999
Q ss_pred EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (389)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (389)
|... .+..... ..|......+.|-. .++++++ .++.+.+||.......-.....|.+.++++++-|..
T Consensus 2278 ~q~~-pk~~~s~-----qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSW-----QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred cccC-Ccceecc-----ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc
Confidence 9987 3333333 56777777777764 4566554 478999999876544333448899999999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (389)
+.|++|+.+|.|++||++..+....+.. +. ...++++|+..|.++||++.....+.++.... +|
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~-ak 2412 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH-AK 2412 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEccccchhhcCchhh-cc
Confidence 9999999999999999998776665532 33 45689999999999999998887777765321 22
Q ss_pred CCC--e--eEEEECCCCCeEEeeeCCCe
Q 016458 343 EGR--I--TCLGLSADGSALCTGSWDTN 366 (389)
Q Consensus 343 ~~~--v--~~~~~~~~~~~l~~~~~dg~ 366 (389)
.+- . ..+... .+..|.+++.||+
T Consensus 2413 ~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2413 QGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred cchhhhcCceeeec-cCceEEEecCCCC
Confidence 221 1 122222 2345677777763
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.50 E-value=1.5e-10 Score=111.41 Aligned_cols=255 Identities=12% Similarity=0.138 Sum_probs=165.4
Q ss_pred EEEEECCC-CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeec--------------ccccceEEEEEeeCCCcEEEEe
Q 016458 113 MTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS--------------GHKGYVSCCQYVPDEDTHLITS 177 (389)
Q Consensus 113 ~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~l~~~ 177 (389)
..+++++. +..+++-..++.|.++|..... ...+. ..-.....+++.++++.++++-
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~--------i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD 642 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF--------IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD 642 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE--------EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence 45788774 5566776778899999986521 11111 1122457889998864445555
Q ss_pred eCCCeEEEEeCCCCeeEEEecCcc-----cC------CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE
Q 016458 178 SGDQTCVLWDITTGLRTSVFGGEF-----QS------GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF 246 (389)
Q Consensus 178 ~~dg~i~iwd~~~~~~~~~~~~~~-----~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 246 (389)
..++.|+++|+.++.......... .. ..-.....++++|.++.++++.+.++.|++||...+. +..+
T Consensus 643 t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~~ 720 (1057)
T PLN02919 643 TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRVF 720 (1057)
T ss_pred CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEEE
Confidence 567889999988765432211000 00 0012346789998667777888888999999987542 2222
Q ss_pred ee---------------eccceEEEEEecCCCEE-EEEecCCeEEEEECCCCceeeEeecc---------CC-------C
Q 016458 247 HG---------------HEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQVYYQQ---------HG-------E 294 (389)
Q Consensus 247 ~~---------------~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~-------~ 294 (389)
.+ .-.....++++|+++.| ++-+.++.|++||+.++......... .+ .
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 11 11235679999998855 55566789999999876532111000 00 0
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc---------CCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL---------QNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
........++++++|+.+++-..++.|++||..++......... ..+.-.....++++++|+.+++-+.++
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 01112468999999998888888999999999877665433210 011223678999999999999988999
Q ss_pred eeEEeecceecccCcc
Q 016458 366 NLKVNLGFWRVQEGAL 381 (389)
Q Consensus 366 ~i~i~~~~W~~~~~~~ 381 (389)
.|++ |++.+++.
T Consensus 881 ~Irv----id~~~~~~ 892 (1057)
T PLN02919 881 LIRY----LDLNKGEA 892 (1057)
T ss_pred EEEE----EECCCCcc
Confidence 9999 99998865
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.49 E-value=1.6e-10 Score=100.47 Aligned_cols=260 Identities=16% Similarity=0.109 Sum_probs=160.0
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (389)
Q Consensus 78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (389)
++..++.++.+|.+..+|..+|+.+............... .+..++.++.+|.+..||..+++. .-.....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-------~W~~~~~ 174 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-------LWTYSRV 174 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-------eeEEccC
Confidence 3567888889999999999999988776644321111111 345677788899999999987652 1111111
Q ss_pred ccce-----EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC--CC---e-eEEEeeCCCCcEEEEee
Q 016458 158 KGYV-----SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--AD---V-LSVSISGSNSRMFVSGS 226 (389)
Q Consensus 158 ~~~v-----~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~---v-~~~~~~~~~~~~l~~~~ 226 (389)
...+ .+... .+ ..++.+..+|.+..+|..+++.............. .. + .+..+ .+..+++++
T Consensus 175 ~~~~~~~~~~sp~~-~~--~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~ 248 (377)
T TIGR03300 175 TPALTLRGSASPVI-AD--GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVS 248 (377)
T ss_pred CCceeecCCCCCEE-EC--CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEE
Confidence 1000 01111 12 35778888999999999999876654211000000 00 0 11111 234677788
Q ss_pred CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (389)
Q Consensus 227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (389)
.+|.++.||..++ +.+-... . ....... ..+..+++++.+|.+..+|..+++.+......... .......
T Consensus 249 ~~g~l~a~d~~tG-~~~W~~~-~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~----~~ssp~i- 318 (377)
T TIGR03300 249 YQGRVAALDLRSG-RVLWKRD-A-SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR----QLTAPAV- 318 (377)
T ss_pred cCCEEEEEECCCC-cEEEeec-c-CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC----ccccCEE-
Confidence 8999999999877 4333322 1 1111222 24678888889999999999999877554221111 1122222
Q ss_pred CCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCe-eEEEECCCCCeEEeeeCCCeeEE
Q 016458 307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI-TCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.+..+++++.+|.|+++|..+++.+..+ ..+...+ .+.++. + ..|+.++.||.|..
T Consensus 319 -~g~~l~~~~~~G~l~~~d~~tG~~~~~~----~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 319 -VGGYLVVGDFEGYLHWLSREDGSFVARL----KTDGSGIASPPVVV-G-DGLLVQTRDGDLYA 375 (377)
T ss_pred -ECCEEEEEeCCCEEEEEECCCCCEEEEE----EcCCCccccCCEEE-C-CEEEEEeCCceEEE
Confidence 4668999999999999999999999888 3344332 222232 3 35888999999876
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.45 E-value=3e-09 Score=88.32 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=118.3
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCC-eEEEEECCCCceeeEeeccC
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQH 292 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~ 292 (389)
|++.++++++..+. |...+.+...+ . ..--+|.+.|.-..+..+++-++.|..|| .+-+||.++++... +....
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~-~--~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l 401 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDG-Y--SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL 401 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCC-e--eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCc
Confidence 44557788887775 67777766543 2 22235677788888888888899999999 89999998775443 33333
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeec
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLG 372 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~ 372 (389)
+ .|-++..+++|++++++.....+.+.|+.++.....- +...+-|+.+.|+|+++++|-+--+|.+.-...
T Consensus 402 g-----~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik 472 (668)
T COG4946 402 G-----NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK 472 (668)
T ss_pred c-----ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec----ccccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence 3 3999999999999999999999999999999876554 667789999999999999998887775332223
Q ss_pred ceecccCccc
Q 016458 373 FWRVQEGALS 382 (389)
Q Consensus 373 ~W~~~~~~~~ 382 (389)
++|+..++..
T Consensus 473 lydm~~~Kiy 482 (668)
T COG4946 473 LYDMDGGKIY 482 (668)
T ss_pred EEecCCCeEE
Confidence 3999888764
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.45 E-value=1.3e-11 Score=97.71 Aligned_cols=198 Identities=16% Similarity=0.231 Sum_probs=147.7
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeC----CCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNA----LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (389)
..+++++.+.++...|++|-..|++.-+.+ +.....+....|...+..+-|+.....+++.+.|..+.---.+.+.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 457999999999999999999999998854 3445566667888999999999999999999998876544444332
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC--CCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--TGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (389)
... .. .+ ....+++.+.- .+...|...|.|..-.+. .-..+..+ .+|...+.+++|.| .+.
T Consensus 148 ~lg-~Y----~~---~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~-----~~h~~~~~~l~Wd~-~~~ 210 (404)
T KOG1409|consen 148 RLG-GY----NF---ETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTF-----NGHTGEVTCLKWDP-GQR 210 (404)
T ss_pred ccc-ce----Ee---eccCCCCceee---EEEEecccccceEEEEEeecCCceEEEE-----cCcccceEEEEEcC-CCc
Confidence 110 00 00 01111111211 144555556666555443 33455555 78999999999999 888
Q ss_pred EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC
Q 016458 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (389)
++++|..|..+.+||+-........+.+|...|..+..-+--+.+++++.||.|.+|+++.
T Consensus 211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999999999877677788889999999999988888999999999999999864
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=5.4e-12 Score=109.29 Aligned_cols=243 Identities=16% Similarity=0.168 Sum_probs=172.4
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC--------CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK--------DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 181 (389)
....|+.|+....++++|+.||.++|..+.+.... ...+...+++.+|+..|.-+.|+... +.|-+...+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCCc
Confidence 45789999999999999999999999998875421 22344567789999999999999886 6788899999
Q ss_pred eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC
Q 016458 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD 261 (389)
Q Consensus 182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 261 (389)
.|.+|-+-.+....... .....+.|.+++|+. ++..+.....||.|.+=.+....---+.+.+ .....+.|++|
T Consensus 94 lIiVWmlykgsW~EEMi---NnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D 167 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMI---NNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSED 167 (1189)
T ss_pred eEEEEeeecccHHHHHh---hCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcch--heccceeeccc
Confidence 99999988875443321 134566799999998 8888888889998887666543111111221 12457899999
Q ss_pred CCEEEEEecCCeEEEEECCCCc-------eeeEeeccCCCCCCCCeeEEEeC--------CCCCEEEEEecCCcEEEEEc
Q 016458 262 GNRFGTGSDDGTCRLFDIRTGH-------QLQVYYQQHGENEIPHVTSIAFS--------ISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 262 ~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i~i~d~ 326 (389)
.+.++.+-.+|.+.+||....- +........ .+....|..+.|. |+...|+++..+|.+.|..-
T Consensus 168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~-s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF-SNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee-cCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 9999999999999999965321 101111000 0111124555553 57889999999999988765
Q ss_pred ccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
.+......+ ...-.|....|+++|..|+.+|.|.
T Consensus 247 eND~~Pvv~-----dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 247 ENDPEPVVV-----DTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred cCCCCCeEE-----ecccEeecceecCCCcEEEEccCcc
Confidence 544433333 1225788999999999999998654
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=8.7e-13 Score=110.89 Aligned_cols=249 Identities=16% Similarity=0.212 Sum_probs=172.5
Q ss_pred eEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC
Q 016458 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181 (389)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 181 (389)
+..+.+|...|..++--.+.+.+++++.|.+|++|.++......+...+..++..|+.+|.++.|..+. +++ ++.||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i--~ScD~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSI--ASCDG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-cee--eeccC
Confidence 345567888888887777888999999999999999998666656666788899999999999999875 344 46688
Q ss_pred eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC-CCcEEEEe-eCCCceEEEeCCCCCcceeEEe-----eeccceE
Q 016458 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSG-SCDSTARLWDTRVASRAVRTFH-----GHEGDVN 254 (389)
Q Consensus 182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i~ 254 (389)
.|.+||.--+..+...... ...+.+..+...+. +..++..+ +...+|+++|.+.. .-...++ +.+..++
T Consensus 805 giHlWDPFigr~Laq~~da---pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDA---PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeecccccchhHhhhcC---cccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCCCchhee
Confidence 9999998887766644322 12223333333332 33444444 77899999999976 4333333 3345688
Q ss_pred EEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE-EEcccceEEE
Q 016458 255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV-WDTLLAKVVL 333 (389)
Q Consensus 255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~ 333 (389)
+++..+.|++++++-.+|.|.+.|.++|+.+..+..-... ...++ .|..+.++....|.++.+ |....+....
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd-----llqla-apsdq~L~~saldHslaVnWhaldgimh~ 954 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD-----LLQLA-APSDQALAQSALDHSLAVNWHALDGIMHL 954 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch-----hhhhc-CchhHHHHhhcccceeEeeehhcCCeeee
Confidence 9999999999999999999999999999988776553322 33333 256677888888888888 9877776665
Q ss_pred eecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 334 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
..+ ....+..-+. .-|..|+++.....+.+
T Consensus 955 q~k----pppepahflq--svgpSLV~a~~Gn~lgV 984 (1034)
T KOG4190|consen 955 QDK----PPPEPAHFLQ--SVGPSLVTAQNGNILGV 984 (1034)
T ss_pred ccC----CCCcchhhhh--ccCceeEEeccCcEEEE
Confidence 553 2221111111 12445666655555555
No 280
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.42 E-value=1.6e-11 Score=97.21 Aligned_cols=209 Identities=17% Similarity=0.305 Sum_probs=146.8
Q ss_pred CcEEEEEEcCCCC--eEEEEecCCcEEEEeCCCCCeeE---------------EE---------------------eeCC
Q 016458 68 GKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTH---------------AI---------------------KLPC 109 (389)
Q Consensus 68 ~~v~~~~~~~~~~--~l~~~~~dg~v~iw~~~~~~~~~---------------~~---------------------~~~~ 109 (389)
..|+.+.|.++++ .++..+.|.+|++|.+....... .+ ..|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4589999999775 56777889999999764321100 00 1345
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecc-----cccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDEDTHLITSSGDQTCV 184 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 184 (389)
--|+++.++.|...++++. |=.|.+|+++-... .... .-++. -...|++..|+|..-+.|+-.+..|+|+
T Consensus 165 yhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~---sFnI-VDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ---SFNI-VDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred eEeeeeeecCccceEeecc-ceeeeeccccccCC---ceeE-EEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 5689999999999888874 67899999886331 1111 11222 2456889999998778899999999999
Q ss_pred EEeCCCCeeEEE----ecCc-------ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc--
Q 016458 185 LWDITTGLRTSV----FGGE-------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-- 251 (389)
Q Consensus 185 iwd~~~~~~~~~----~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-- 251 (389)
+.|++....-.. +... +...--..|..+.|++ +++++++-.. -+|++||+....+++..+.-|..
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 999985422111 1000 0012234578899998 8888887543 68999999877788888877642
Q ss_pred -------------ceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 252 -------------DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 252 -------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
.-..++|+.++.++++|+....+++|++..+.
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 12457899899999999999999999976554
No 281
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=6.3e-12 Score=98.18 Aligned_cols=257 Identities=13% Similarity=0.172 Sum_probs=168.0
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-----eeEEEeeCC------------CcEEEEEECCCC--cEEEEe
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPC------------AWVMTCAFSPTG--QSVACG 127 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 127 (389)
.+.|+++.|...|.+|++|...|.|.+|.-.... ....++.|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999754432 122234442 457888887644 456777
Q ss_pred cCCCcEEEEeCCCCCCC---------------CCC---------------------CcceeeecccccceEEEEEeeCCC
Q 016458 128 GLDSVCSIFNLNSPTDK---------------DGN---------------------LPVSRMLSGHKGYVSCCQYVPDED 171 (389)
Q Consensus 128 ~~dg~i~vw~~~~~~~~---------------~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~ 171 (389)
+.|.+|++|.+.....+ .+. .+.......|.--|.++.+..+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~- 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK- 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-
Confidence 78999999998764200 000 00111224677788899998875
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeE---EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc-----e
Q 016458 172 THLITSSGDQTCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-----V 243 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~ 243 (389)
. .+....|-.|.+|+++-.... .-+.+........-|++..|+|...+.+.-.+..|.|++-|+|....+ +
T Consensus 185 e-t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 E-TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred h-eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 3 444567788999998754221 122111111223458899999988888888999999999999943211 1
Q ss_pred eE----------EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc-eeeEeeccCCC----------CCCCCeeE
Q 016458 244 RT----------FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGE----------NEIPHVTS 302 (389)
Q Consensus 244 ~~----------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~----------~~~~~i~~ 302 (389)
.. +.+-...|..+.|+++|+++++-.. -+|++||++..+ ++.++..+... .....-..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11 1122346788999999999988765 489999998754 33443222110 00111245
Q ss_pred EEeCCCCCEEEEEecCCcEEEEEc
Q 016458 303 IAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 303 ~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
+.||.|.+.+.+|+..+..-+|-.
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEecCCcccccccccccceeeecc
Confidence 778888889999988877777753
No 282
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.40 E-value=8.1e-10 Score=92.24 Aligned_cols=261 Identities=18% Similarity=0.165 Sum_probs=157.7
Q ss_pred cEEEEEEcCCCCeEEEEecCC---------------cEEEEeCCCCCeeEEEeeCCCc--EE-EEEECCCCcEEEEe---
Q 016458 69 KVYSLDWTSERNRIVSASQDG---------------RLIVWNALTSQKTHAIKLPCAW--VM-TCAFSPTGQSVACG--- 127 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg---------------~v~iw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~--- 127 (389)
.|.-+.|+|.+++|.+-+..+ .+.+||..++..+..+.....+ .. -+.|+.+.+++|--
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~ 152 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS 152 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence 488999999999999876433 4899999988777666544332 22 34444444433322
Q ss_pred ----------------------------------------------cCCCcEEEEeCCCCCCCCCCCcceeeecccccce
Q 016458 128 ----------------------------------------------GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV 161 (389)
Q Consensus 128 ----------------------------------------------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v 161 (389)
+..+.+++|.+..+. ......-....=
T Consensus 153 sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s-------~l~tk~lfk~~~ 225 (561)
T COG5354 153 SLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS-------VLVTKNLFKVSG 225 (561)
T ss_pred eEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC-------eeeeeeeEeecc
Confidence 223333444333211 011111111122
Q ss_pred EEEEEeeCCCcEEEEee----------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE-eeCCCc
Q 016458 162 SCCQYVPDEDTHLITSS----------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS-GSCDST 230 (389)
Q Consensus 162 ~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~ 230 (389)
..+.|.+.|..+++-.- ....+.++++........ ....++|...+|.|....+.++ |..+..
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE------KDLKDPVHDFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee------ccccccceeeeecccCCceeEEecccccc
Confidence 34677777743333221 124577777763322221 2557899999999954444333 357889
Q ss_pred eEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC---CeEEEEECCCCceee-EeeccCCCCCCCCeeEEEeC
Q 016458 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQ-VYYQQHGENEIPHVTSIAFS 306 (389)
Q Consensus 231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~-~~~~~~~~~~~~~i~~~~~~ 306 (389)
+.++|++.. + .+......=+.+.|+|.+++++.++-| |.+.+||........ .+.. . ..+-+.|+
T Consensus 300 ~s~~~lr~N---l-~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~-~------n~s~~~ws 368 (561)
T COG5354 300 VSVFDLRGN---L-RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-L------NTSYCDWS 368 (561)
T ss_pred eeecccccc---e-EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec-C------CceEeecc
Confidence 999999854 2 233344555778999999999998765 679999987654444 2222 1 14667899
Q ss_pred CCCCEEEEEe------cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 307 ISGRLLFAGY------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 307 ~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
||++++.+.. .|..+.|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 369 pd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f------------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 369 PDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF------------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CCceEEEecCCCcccccCcceEEEEecCchhh------------hhhhccccCCcccceeeccCC
Confidence 9999888764 3678999998543322 345566777666666655554
No 283
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=3.3e-13 Score=119.28 Aligned_cols=270 Identities=13% Similarity=0.204 Sum_probs=188.3
Q ss_pred CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC--Cc
Q 016458 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD--SV 132 (389)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~ 132 (389)
..++..++|+.|+..-+|++|+-+.+.|+.|+..|.|++|++.+|........|.++|+.+.-+.+|..+++.+.- -.
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 3567778899999999999999999999999999999999999999999999999999999999999888776543 35
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
..+|+..... .....+ ..-.++.|+... ..-+.|+......+||+.++....++.... ......-.+.
T Consensus 1169 saLW~~~s~~------~~~Hsf----~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~-~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1169 SALWDASSTG------GPRHSF----DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDT-VTSSYSNNLA 1236 (1516)
T ss_pred HHHhcccccc------Cccccc----cccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcc-hhhhhhcccc
Confidence 7899987621 122222 234577888764 445556666778999999998776642211 1122233678
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (389)
.|+| ...+++ .|| .+||.+.. +.++.+...... -.-.|+|+|..++..+. |||+++.+.+...+...
T Consensus 1237 ~FsP-~D~LIl---ndG--vLWDvR~~-~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1237 HFSP-CDTLIL---NDG--VLWDVRIP-EAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred ccCC-CcceEe---eCc--eeeeeccH-HHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc
Confidence 8998 666665 455 58999987 667666544422 23469999999988775 89999988877664432
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEec--C---------------CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYS--N---------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~--d---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
-+.+.|+..|..+++.-. | ...+-+|...-..+.++ .-.-+|..++-+|..
T Consensus 1304 -------qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi-----~v~R~~~Dlct~~~D 1371 (1516)
T KOG1832|consen 1304 -------QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATI-----PVDRCLLDLCTEPTD 1371 (1516)
T ss_pred -------ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceee-----ecccchhhhhcCCcc
Confidence 367889999987765431 0 12233343334444444 123356666666666
Q ss_pred CeEEee
Q 016458 356 SALCTG 361 (389)
Q Consensus 356 ~~l~~~ 361 (389)
.+|..-
T Consensus 1372 ~~l~vI 1377 (1516)
T KOG1832|consen 1372 SFLGVI 1377 (1516)
T ss_pred ceEEEE
Confidence 666553
No 284
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=8.3e-10 Score=96.88 Aligned_cols=217 Identities=13% Similarity=0.124 Sum_probs=151.2
Q ss_pred ccCCCcceeeeecccccCcEEEEEEcCCC------------CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEEC
Q 016458 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSER------------NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118 (389)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~------------~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~ 118 (389)
..+....+.+.++..|...|+.+.|.|.. -+||++...|.|.+||...+..+..+..+..++..++|-
T Consensus 39 VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~ 118 (1062)
T KOG1912|consen 39 VVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWV 118 (1062)
T ss_pred EEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeee
Confidence 34455677888899999999999998732 257788888999999999999999999999999999997
Q ss_pred C---CC-cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC---
Q 016458 119 P---TG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--- 191 (389)
Q Consensus 119 ~---~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--- 191 (389)
+ +. ..|++-.....+.+|+..+++ ..-..........|+.+.|-....+..-+..|.+.+-+.-..
T Consensus 119 ~~rd~Srd~LlaIh~ss~lvLwntdtG~-------k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep 191 (1062)
T KOG1912|consen 119 PARDDSRDVLLAIHGSSTLVLWNTDTGE-------KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEP 191 (1062)
T ss_pred eccCcchheeEEecCCcEEEEEEccCCc-------eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCC
Confidence 6 23 567777778899999998866 233333334566778888876677777777787777664321
Q ss_pred ----eeEEEecCcccCCCCC----------------C---------eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc
Q 016458 192 ----LRTSVFGGEFQSGHTA----------------D---------VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242 (389)
Q Consensus 192 ----~~~~~~~~~~~~~~~~----------------~---------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 242 (389)
+....- ..|.+ . ...++|+|.-.+.++. .....+.++|++-. .+
T Consensus 192 ~~pgk~~qI~-----sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~-~~ 264 (1062)
T KOG1912|consen 192 DVPGKEFQIT-----SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYE-CC 264 (1062)
T ss_pred CCCceeEEEe-----cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhh-ce
Confidence 111111 11111 0 1234567744444443 45678999999876 66
Q ss_pred eeEEeeeccceEEEEEecCC--CEEEEEecCCeEEEEECCC
Q 016458 243 VRTFHGHEGDVNTVKFFPDG--NRFGTGSDDGTCRLFDIRT 281 (389)
Q Consensus 243 ~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~ 281 (389)
+....-..+.+.-+.+-|++ ..|++...||.+.+|--+.
T Consensus 265 l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 265 LAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 66666556656666776654 5688899999999986543
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.36 E-value=4.1e-09 Score=99.83 Aligned_cols=291 Identities=13% Similarity=0.121 Sum_probs=182.6
Q ss_pred ccCcEEEEEEcCCCCeEEEEec---C---CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC---CCcEEEE
Q 016458 66 HAGKVYSLDWTSERNRIVSASQ---D---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIF 136 (389)
Q Consensus 66 h~~~v~~~~~~~~~~~l~~~~~---d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw 136 (389)
+.+.-..++|-.||.++|+.+. + ..++||+-+ |....+-..-.+--.+++|.|.|+++|+... ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 5556778999999999998774 2 579999954 6554444433344467899999999998754 3567777
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
.-+.-+... ....+......|..+.|++++ ..|+....|. |.+|-..+..-...... .......+..+.|+|
T Consensus 287 ErNGLrhge----F~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei--~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 287 ERNGLRHGE----FTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEI--RFSSSESVNFVKWDP 358 (928)
T ss_pred ecCCcEeee----EecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEE--EccCCCCCCceEECC
Confidence 766533211 111223455678999999998 6777766554 99999877643222211 123334455699999
Q ss_pred CCCcEEEEeeCCCceEEEeCC----CCC-------cceeEE-----------------------eeeccceEEEEEecCC
Q 016458 217 SNSRMFVSGSCDSTARLWDTR----VAS-------RAVRTF-----------------------HGHEGDVNTVKFFPDG 262 (389)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~----~~~-------~~~~~~-----------------------~~~~~~i~~~~~~~~~ 262 (389)
.+...|...+.+|.+..++.. ... ..+..+ -....+|.+++|++++
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN 438 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence 888888888877777665532 100 001111 1134679999999998
Q ss_pred CEEEEEecCCeEEEEECCCCcee--------eEeec-----cCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEEEEc
Q 016458 263 NRFGTGSDDGTCRLFDIRTGHQL--------QVYYQ-----QHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDT 326 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~ 326 (389)
..+++...||.|.+|........ ..+.. .........+..++|..+..+++....+ ..+.+++.
T Consensus 439 ~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred CeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 88999999999999985443211 11111 0111123347888888877766666554 57888887
Q ss_pred ccce---EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 327 LLAK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 327 ~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.... ..... ..-.+.+..+...++...++.-..||.+..
T Consensus 519 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~ 560 (928)
T PF04762_consen 519 DDSENSASVESS----TEVDGVVLIISSSPDSGSLYIQTNDGKVFQ 560 (928)
T ss_pred ccCCCceeEEEE----eccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence 4332 22222 233455666666665554666677888765
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=1.7e-10 Score=90.38 Aligned_cols=256 Identities=18% Similarity=0.300 Sum_probs=166.2
Q ss_pred CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccc------------cceEEEEEeeC-CCcEEE
Q 016458 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK------------GYVSCCQYVPD-EDTHLI 175 (389)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~-~~~~l~ 175 (389)
...|+++.|...|.++++|...|.|.+|.-+... ..+......+++|. ..|..+.|..+ +...++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~--~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSY--GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccc--ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 3568999999999999999999999999876533 11222333344443 35677888765 446788
Q ss_pred EeeCCCeEEEEeCCCCee-------------------------------------EEEecC-cccCCCCCCeeEEEeeCC
Q 016458 176 TSSGDQTCVLWDITTGLR-------------------------------------TSVFGG-EFQSGHTADVLSVSISGS 217 (389)
Q Consensus 176 ~~~~dg~i~iwd~~~~~~-------------------------------------~~~~~~-~~~~~~~~~v~~~~~~~~ 217 (389)
..+.|.+|++|.+..... +...+. .....|...+.++.++.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns- 182 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS- 182 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-
Confidence 889999999998764310 000000 01245667788888886
Q ss_pred CCcEEEEeeCCCceEEEeCCCCCccee--EEeeec-----cceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeE--
Q 016458 218 NSRMFVSGSCDSTARLWDTRVASRAVR--TFHGHE-----GDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQV-- 287 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~-----~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~-- 287 (389)
+...+++ ..|-.|.+|++........ .+++|. .-|++..|+| ....+.-.+..|.|++-|++.......
T Consensus 183 D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 183 DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 5555555 4578899999876544333 334443 3488899999 455677777889999999985322111
Q ss_pred --e--eccC-----CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc-eEEEeecCcC--------CCCCCCe---
Q 016458 288 --Y--YQQH-----GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQ--------NSHEGRI--- 346 (389)
Q Consensus 288 --~--~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~--------~~~~~~v--- 346 (389)
+ .... -..-...|..+.|+++|+++++-+.- +|.+||.+.. .++.++.... ......|
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 0 0000 00112358899999999999987654 8999998753 4555552100 0011222
Q ss_pred eEEEECCCCCeEEeeeCCCeeEE
Q 016458 347 TCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 347 ~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
..+.|+.|.+.+.+|+..+..-+
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgi 363 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGI 363 (460)
T ss_pred EEEEecCCcccccccccccceee
Confidence 35778888889999988887777
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.32 E-value=3.7e-09 Score=87.79 Aligned_cols=224 Identities=15% Similarity=0.159 Sum_probs=153.5
Q ss_pred ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCc--ceeee--cccccceEEEE-EeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP--VSRML--SGHKGYVSCCQ-YVPDEDTHLITSSGDQTCVLWDITTG 191 (389)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~--~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~ 191 (389)
.+.+|+.++.. ..|.|.+||..+........- ..+.. .....+..-+. |++..+.+++..+. |...+.+...+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 35577777654 467899999887542211111 11000 00011111111 33333456666655 67778777666
Q ss_pred eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC-ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec
Q 016458 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD 270 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 270 (389)
..+.. ++...|.-..+.. +++-++.|..|| .+-+||.+.+ .+..+...-+.|.++..+|+|++++++..
T Consensus 352 ~~iqv-------~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaNd 421 (668)
T COG4946 352 YSIQV-------GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVAND 421 (668)
T ss_pred eeEEc-------CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEcC
Confidence 65543 5666787777776 556788899999 8999999865 45566667788999999999999999999
Q ss_pred CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC----cEEEEEcccceEEEeecCcCCCCCCCe
Q 016458 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVWDTLLAKVVLNLGSLQNSHEGRI 346 (389)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~v 346 (389)
...|.+.|+.++.....-..... -|+.+.|+|+++++|-+--+| .|+++|+..++....-. ..+.=
T Consensus 422 r~el~vididngnv~~idkS~~~-----lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-----~ta~D 491 (668)
T COG4946 422 RFELWVIDIDNGNVRLIDKSEYG-----LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-----PTAYD 491 (668)
T ss_pred ceEEEEEEecCCCeeEecccccc-----eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-----Ccccc
Confidence 99999999999876655443333 399999999999999887665 68999999888766542 22233
Q ss_pred eEEEECCCCCeEEeee
Q 016458 347 TCLGLSADGSALCTGS 362 (389)
Q Consensus 347 ~~~~~~~~~~~l~~~~ 362 (389)
.+-+|.||+++|.--+
T Consensus 492 fsPaFD~d~ryLYfLs 507 (668)
T COG4946 492 FSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCcccCCCCcEEEEEe
Confidence 5568999999886654
No 288
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.1e-09 Score=88.73 Aligned_cols=262 Identities=12% Similarity=0.104 Sum_probs=150.0
Q ss_pred EEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc-EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC
Q 016458 91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD 169 (389)
Q Consensus 91 v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (389)
|++.+..+.+....+..+...|..++|+|..+ ++..++.+..|+|.|+++.. ....+..+ ..+++++|.-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------~vssy~a~-~~~wSC~wDld 246 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------VVSSYIAY-NQIWSCCWDLD 246 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-------eeeheecc-CCceeeeeccC
Confidence 55555555555556667778899999999777 78889999999999999854 45555555 78999999999
Q ss_pred CCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC-----CCcEEEEeeCCCceEEEeCCCCCcce-
Q 016458 170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-----NSRMFVSGSCDSTARLWDTRVASRAV- 243 (389)
Q Consensus 170 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~- 243 (389)
..+++++|...|.|.+||++..+........ .....+|..++..+. .+.+++....+ +..|++.......
T Consensus 247 e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a--~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 247 ERHVIYAGLQNGMVLVYDMRQPEGPLMELVA--NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP 322 (463)
T ss_pred CcceeEEeccCceEEEEEccCCCchHhhhhh--hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC
Confidence 8899999999999999999876432221000 122344554444332 23444444432 4556554321111
Q ss_pred e-EEeeeccceEEEEEecCCCEE-EEEecCC------eEE-EEECCCCceeeEeeccC-CCCCCC--CeeEEEeCCCCCE
Q 016458 244 R-TFHGHEGDVNTVKFFPDGNRF-GTGSDDG------TCR-LFDIRTGHQLQVYYQQH-GENEIP--HVTSIAFSISGRL 311 (389)
Q Consensus 244 ~-~~~~~~~~i~~~~~~~~~~~l-~~~~~dg------~i~-i~d~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~ 311 (389)
. .-.+..+...++.+++-.+.+ ++.-.+. .|- --|-.+|..+....... +..... .-..+.-.++.++
T Consensus 323 ~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~ 402 (463)
T KOG1645|consen 323 CVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNY 402 (463)
T ss_pred cccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccE
Confidence 1 111123445555565533433 3332211 011 11222333322221111 000000 0111222345555
Q ss_pred EE-EEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEeeeCCCeeEE
Q 016458 312 LF-AGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKV 369 (389)
Q Consensus 312 l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 369 (389)
++ +|...+.+.+||..+.+.+.++. .+.+|.+++... ++.-++..-.|..++|
T Consensus 403 iv~~gd~tn~lil~D~~s~evvQ~l~-----~~epv~Dicp~~~n~~syLa~LTd~~v~I 457 (463)
T KOG1645|consen 403 IVVVGDSTNELILQDPHSFEVVQTLA-----LSEPVLDICPNDTNGSSYLALLTDDRVHI 457 (463)
T ss_pred EEEecCCcceeEEeccchhheeeecc-----cCcceeecceeecCCcchhhheecceEEE
Confidence 54 45566789999999999999883 447888887654 3443344445677888
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.32 E-value=2.1e-08 Score=81.65 Aligned_cols=221 Identities=20% Similarity=0.227 Sum_probs=143.5
Q ss_pred EEEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEEC-CCCcEEEEecCCCcEEEEeCCCCCCCCCCCc
Q 016458 72 SLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS-PTGQSVACGGLDSVCSIFNLNSPTDKDGNLP 149 (389)
Q Consensus 72 ~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 149 (389)
+.+|.+ ++.++++-...+.|..|+..++.... +.... ...+++. +++.++++ ...+ +.++|..+++ ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~-~~~~-~~~~d~~~g~-----~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVA-DSGG-IAVVDPDTGK-----VT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEE-ETTC-EEEEETTTTE-----EE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEE-EcCc-eEEEecCCCc-----EE
Confidence 578888 67777777778999999987765433 33333 6777777 56555444 4444 5666877643 11
Q ss_pred ceeee--cc-cccceEEEEEeeCCCcEEEEeeCC--------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458 150 VSRML--SG-HKGYVSCCQYVPDEDTHLITSSGD--------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (389)
Q Consensus 150 ~~~~~--~~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (389)
..... .. .....+++++.++| ++.++.... |.|..++.. ++..... ..-.....++|+|++
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~------~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA------DGLGFPNGIAFSPDG 145 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE------EEESSEEEEEEETTS
T ss_pred EEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEEe------cCcccccceEECCcc
Confidence 22222 11 34678899999998 555554433 668888877 5544433 234557899999944
Q ss_pred CcEEEEeeCCCceEEEeCCCCCcce---eEE---eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458 219 SRMFVSGSCDSTARLWDTRVASRAV---RTF---HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (389)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~~~~~~---~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (389)
..++++-+..+.|..+++......+ ..+ ....+..-.+++..+|++.++....+.|.++|.. ++.+..+....
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~ 224 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV 224 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS
T ss_pred hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC
Confidence 4455677778899999987543311 122 1112237789999999988888889999999987 88887776653
Q ss_pred CCCCCCCeeEEEe-CCCCCEEEEEe
Q 016458 293 GENEIPHVTSIAF-SISGRLLFAGY 316 (389)
Q Consensus 293 ~~~~~~~i~~~~~-~~~~~~l~~~~ 316 (389)
. .+++++| -++.+.|++.+
T Consensus 225 ~-----~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 P-----RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp S-----SEEEEEEESTTSSEEEEEE
T ss_pred C-----CEEEEEEECCCCCEEEEEe
Confidence 2 3899999 46767666654
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.31 E-value=8.5e-09 Score=80.41 Aligned_cols=241 Identities=15% Similarity=0.169 Sum_probs=135.4
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCC--CeeEEEeeCC---CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458 72 SLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPC---AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (389)
Q Consensus 72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (389)
.++.+++|+.||.- .|..|.|=..++. ..+...+.+. ..=..++|+||+..||.+...|+|++||+.....-
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-- 78 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-- 78 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE--
Confidence 35677889887765 5567777654432 2223333322 34578999999999999999999999999863210
Q ss_pred CCcceeee-cccccceEEEEEeeCC-----CcEEEEeeCCCeEEEEeCCCC-----eeEEEecCcccCCCCCCeeEEEee
Q 016458 147 NLPVSRML-SGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 147 ~~~~~~~~-~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
..+..... ..-...|..+.|.+.. ...|++-..+|.++-|-+..+ +....+. +.......|.++.++
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs--f~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS--FSSHYPHGINSAVYH 156 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE--ecccCCCceeEEEEc
Confidence 00011111 1123566777776532 235777778888887776322 2223321 123457789999999
Q ss_pred CCCCcEEEEeeCCCc-eEEEeCCCCCcceeEEeeeccceEEEEEecCCCE--EEEEecCCe------EEEEECCCCceee
Q 016458 216 GSNSRMFVSGSCDST-ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR--FGTGSDDGT------CRLFDIRTGHQLQ 286 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~dg~------i~i~d~~~~~~~~ 286 (389)
| ..++|++|+.... -.... +....+++-..-.+..+ .++...|+. ..+|.+-+.+...
T Consensus 157 p-~h~LLlVgG~~~~~~~~s~------------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 157 P-KHRLLLVGGCEQNQDGMSK------------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred C-CCCEEEEeccCCCCCcccc------------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee
Confidence 9 5566666654322 00000 11111222111111111 111111111 1233322211111
Q ss_pred EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
.. ......|..|..||||..|++...+|.|.+|++.+.+....+
T Consensus 224 ~~-----~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 224 RQ-----GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred cc-----ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 11 112335999999999999999999999999999987777666
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.31 E-value=1.8e-09 Score=82.93 Aligned_cols=244 Identities=11% Similarity=0.072 Sum_probs=159.8
Q ss_pred EEEEcC-----CCCeEEEEecCCcEEEEeCCCCCee-EEEeeCCCcEEEEEE-CCCCcEEEEecCCCcEEEEeCCCCCCC
Q 016458 72 SLDWTS-----ERNRIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAF-SPTGQSVACGGLDSVCSIFNLNSPTDK 144 (389)
Q Consensus 72 ~~~~~~-----~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~vw~~~~~~~~ 144 (389)
.+.|-| ...+||.|+.-|...+|...+.+.. .....+...|+-+.= ......+..++.|.++++.+++.+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~- 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN- 150 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc-
Confidence 455555 2348999999999999998765533 233333332222111 11233466677888899988876431
Q ss_pred CCCCcceeeeccccc--ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458 145 DGNLPVSRMLSGHKG--YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (389)
Q Consensus 145 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (389)
....|.. .+.++.+++++ .++++.+....|..|.+........-. ......+.-.+..|+. ....+
T Consensus 151 --------~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~--~~a~t~D~gF~~S~s~-~~~~F 218 (344)
T KOG4532|consen 151 --------KFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENI--YEAPTSDHGFYNSFSE-NDLQF 218 (344)
T ss_pred --------cceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeee--EecccCCCceeeeecc-CcceE
Confidence 1122322 37889999997 789999999999999987653222110 0134455567788887 77899
Q ss_pred EEeeCCCceEEEeCCCCCcceeE----EeeeccceEEEEEecCCC--EEEEEecCCeEEEEECCCCceeeEeeccCCC--
Q 016458 223 VSGSCDSTARLWDTRVASRAVRT----FHGHEGDVNTVKFFPDGN--RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-- 294 (389)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-- 294 (389)
+++..||++.|||+|....+... -..|.+.++.+.|++.|. +|+..-.-+.+.+.|++++...+.+......
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~ 298 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVER 298 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccc
Confidence 99999999999999987544432 234889999999998543 4555555678999999998877766554322
Q ss_pred -CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458 295 -NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 295 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (389)
.....|....|+.++.-+.+.+.+ .+.=|++.+.
T Consensus 299 ~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 299 KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred cccccccccccccCCCcccccccch-hhheeecccc
Confidence 111236777788777776666554 4555665443
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.30 E-value=8.2e-08 Score=78.17 Aligned_cols=224 Identities=18% Similarity=0.190 Sum_probs=144.0
Q ss_pred EEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe-eCCCcEEEEeeCCCeEEEEeCCCC
Q 016458 114 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-PDEDTHLITSSGDQTCVLWDITTG 191 (389)
Q Consensus 114 ~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~ 191 (389)
+..|.+ ++.++++-...+.|..|+..++. ....... . ...+.+. +++ .++.+...+ +.++|+.++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--------~~~~~~~-~-~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--------VEVIDLP-G-PNGMAFDRPDG--RLYVADSGG-IAVVDPDTG 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE--------EEEEESS-S-EEEEEEECTTS--EEEEEETTC-EEEEETTTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe--------EEEEecC-C-CceEEEEccCC--EEEEEEcCc-eEEEecCCC
Confidence 567888 67777777778999999988743 1112211 2 6677777 543 455555544 455599988
Q ss_pred eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC--------CceEEEeCCCCCcceeEEeeeccceEEEEEecCCC
Q 016458 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 263 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 263 (389)
+.................+.+++.| ++++.++.... |.|..++.. . + +......-...+.++|+|+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~-~~~~~~~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-G-K-VTVVADGLGFPNGIAFSPDGK 146 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-S-E-EEEEEEEESSEEEEEEETTSS
T ss_pred cEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-C-e-EEEEecCcccccceEECCcch
Confidence 6655543211111456688999999 77777765543 457777766 2 3 333333455678999999998
Q ss_pred EEE-EEecCCeEEEEECCCCce-e---eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc
Q 016458 264 RFG-TGSDDGTCRLFDIRTGHQ-L---QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL 338 (389)
Q Consensus 264 ~l~-~~~~dg~i~i~d~~~~~~-~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 338 (389)
.|+ +-+..+.|..|++..... + ..+... .......-.+++..+|++.++....+.|.++|.. ++.+..+.
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~-- 221 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDF--PGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE-- 221 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE---SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE--
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEc--CCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc--
Confidence 775 556788899999864332 1 222111 1111236789999999988888889999999987 88887774
Q ss_pred CCCCCCCeeEEEE-CCCCCeEEee
Q 016458 339 QNSHEGRITCLGL-SADGSALCTG 361 (389)
Q Consensus 339 ~~~~~~~v~~~~~-~~~~~~l~~~ 361 (389)
.....+++++| -++.+.|+..
T Consensus 222 --~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 222 --LPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ---SSSSEEEEEEESTTSSEEEEE
T ss_pred --CCCCCEEEEEEECCCCCEEEEE
Confidence 33458999999 4665555543
No 293
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.4e-09 Score=91.88 Aligned_cols=246 Identities=15% Similarity=0.156 Sum_probs=141.4
Q ss_pred cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEec-----------CCcEEEEeCCCCCeeEEEeeCCC--cE-EEEEE
Q 016458 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-----------DGRLIVWNALTSQKTHAIKLPCA--WV-MTCAF 117 (389)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~-----------dg~v~iw~~~~~~~~~~~~~~~~--~v-~~~~~ 117 (389)
|.-.....++.|. |.+ |.-+.|||..+||+|-+. ...++|||+.+|.....+....+ .+ .-..|
T Consensus 236 WGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frW 313 (698)
T KOG2314|consen 236 WGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRW 313 (698)
T ss_pred ecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEe
Confidence 3333333333332 554 888999999999998652 25799999999999988876332 22 34689
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC--------------------------
Q 016458 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-------------------------- 171 (389)
Q Consensus 118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------------- 171 (389)
|.|++++|.-..+ .|.||+...-.. ...-.-.-..|....|+|.+.
T Consensus 314 S~DdKy~Arm~~~-sisIyEtpsf~l-------ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~ 385 (698)
T KOG2314|consen 314 SHDDKYFARMTGN-SISIYETPSFML-------LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE 385 (698)
T ss_pred ccCCceeEEeccc-eEEEEecCceee-------ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce
Confidence 9999999987664 588888665210 000000112233333333320
Q ss_pred --------------------cEEEEe----------eCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458 172 --------------------THLITS----------SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (389)
Q Consensus 172 --------------------~~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (389)
.+|+.- +.-..+-|+.++........ ......|...+|-|.++++
T Consensus 386 iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-----velke~vi~FaWEP~gdkF 460 (698)
T KOG2314|consen 386 IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-----VELKESVIAFAWEPHGDKF 460 (698)
T ss_pred eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-----eecchheeeeeeccCCCeE
Confidence 111110 00001122222211111110 1334567888999944444
Q ss_pred EEEeeC--CCceEEEeCCCC-C--cceeEEeeeccceEEEEEecCCCEEEEEe---cCCeEEEEECCCCceeeEeeccCC
Q 016458 222 FVSGSC--DSTARLWDTRVA-S--RAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHG 293 (389)
Q Consensus 222 l~~~~~--dg~i~i~d~~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~ 293 (389)
.+..+. ..++.+|.+.+. . ..+..+. ....+.+.|+|.|++++.+. ..|.+.++|.........-...+.
T Consensus 461 ~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~ 538 (698)
T KOG2314|consen 461 AVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF 538 (698)
T ss_pred EEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc
Confidence 333333 357888887732 1 2233333 24568899999999988765 468899999875333222222222
Q ss_pred CCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458 294 ENEIPHVTSIAFSISGRLLFAGYSNG 319 (389)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (389)
..+.+.|.|.|+|++++++-+
T Consensus 539 -----~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 539 -----AATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred -----ccccceECCCCCEEEEeeehh
Confidence 268899999999999987643
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.29 E-value=7.6e-11 Score=95.35 Aligned_cols=166 Identities=17% Similarity=0.228 Sum_probs=116.3
Q ss_pred EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEE---eeCCCeEEEEeC
Q 016458 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT---SSGDQTCVLWDI 188 (389)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~---~~~dg~i~iwd~ 188 (389)
...+..++.++++|++..+....++++..... ...+..... -....+.+.|..+. ..... ++....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~---~~kl~~~~~-v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK---GAKLLDVSC-VPKRPTAISFIRED-TSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC---cceeeeEee-cccCcceeeeeecc-ceEEEEeecCCceeeeeecc
Confidence 45566788999999999888888888876442 111222221 12233444555443 23333 344455556665
Q ss_pred CCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEE
Q 016458 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268 (389)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 268 (389)
..+..... .+|-+.++.++++| ++.+++++..|..|++-........-.-..+|..-|..++.-++ ..|+++
T Consensus 140 ~~~~~~~~------lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~ 211 (390)
T KOG3914|consen 140 DSGRCEPI------LGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSG 211 (390)
T ss_pred cccCcchh------hhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeec
Confidence 55544444 48999999999999 78999999999999998877652333334579999999999865 459999
Q ss_pred ecCCeEEEEECCCCceeeEeec
Q 016458 269 SDDGTCRLFDIRTGHQLQVYYQ 290 (389)
Q Consensus 269 ~~dg~i~i~d~~~~~~~~~~~~ 290 (389)
+.|++|++||+.+++.+..+..
T Consensus 212 sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCCCcEEEEecccCCcccccch
Confidence 9999999999999998866643
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.29 E-value=4.6e-09 Score=81.85 Aligned_cols=206 Identities=13% Similarity=0.140 Sum_probs=120.6
Q ss_pred EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC-------CCcEEEEEECCC------CcEEEEecCCCcEEEE
Q 016458 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-------CAWVMTCAFSPT------GQSVACGGLDSVCSIF 136 (389)
Q Consensus 70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~------~~~l~~~~~dg~i~vw 136 (389)
=..++||||+.+||.+...|+|++||+.. ..+..+... ...|..+.|.+. ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 45799999999999999999999999865 333343322 145666767542 2356777788888888
Q ss_pred eCCCCCCCCCCCcceeeecc-cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458 137 NLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
-+..+............+.. +...|.++.|+|.. ++|+.|+.... +.+. . ......+++-...
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~~--s-------~a~~~GLtaWRiL 188 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDGM--S-------KASSCGLTAWRIL 188 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCcc--c-------cccccCceEEEEc
Confidence 87543222111112222322 46789999999986 56666654322 0000 0 1122233333332
Q ss_pred CCCCcEEEEeeC-CCc------eEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe
Q 016458 216 GSNSRMFVSGSC-DST------ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (389)
Q Consensus 216 ~~~~~~l~~~~~-dg~------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 288 (389)
.....+..+... |+. ..+|.+-+. ............|..+..||||..|++...+|.|.+|++.+-+....+
T Consensus 189 ~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~-~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 189 SDSPYYKQVTSSEDDITASSKRRGLLRIPSF-KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCCCcEEEccccCccccccccccceeeccce-eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 222222211111 111 122222211 111111224567999999999999999999999999999988877776
Q ss_pred eccCC
Q 016458 289 YQQHG 293 (389)
Q Consensus 289 ~~~~~ 293 (389)
.....
T Consensus 268 ~~~eq 272 (282)
T PF15492_consen 268 KQDEQ 272 (282)
T ss_pred chhhC
Confidence 65443
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.8e-11 Score=96.94 Aligned_cols=176 Identities=13% Similarity=0.214 Sum_probs=127.3
Q ss_pred EEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC----C
Q 016458 165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA----S 240 (389)
Q Consensus 165 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~ 240 (389)
+|+-+-..+-++.+.+-.|-+-|++++..... ...+.|.++.|.. .++++..|+..|.|..+|+|.. .
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf-------~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~ 289 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSF-------QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNG 289 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccccc-------ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCC
Confidence 45433222336667778888999988765432 3567899999987 7889999999999999999875 2
Q ss_pred cceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCce---eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 241 RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
.+...+. |...|+++..-. ++++|++.+.+|+|++||++.-++ +..+..+.. ...-.-+-..+....+++++
T Consensus 290 ~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN---~~a~l~~~v~~eeg~I~s~G 365 (425)
T KOG2695|consen 290 WCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN---LSAYLPAHVKEEEGSIFSVG 365 (425)
T ss_pred cceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc---cccccccccccccceEEEcc
Confidence 3444444 888999988766 788999999999999999998777 444433221 11122334556677888999
Q ss_pred cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEEC
Q 016458 317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (389)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 352 (389)
.|...+||.++.+..+.+++......+..+.+++|.
T Consensus 366 dDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 366 DDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred CeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 999999999999999999864433444455566654
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=9.3e-09 Score=89.49 Aligned_cols=213 Identities=10% Similarity=0.003 Sum_probs=126.3
Q ss_pred cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE-EEEecC---CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEE
Q 016458 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS-VACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (389)
Q Consensus 90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 165 (389)
.|.+-|.... ....+.... ....-.|+|+|+. ++..+. +..|.++|+.++. ...+....+......
T Consensus 170 ~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------~~~lt~~~g~~~~~~ 239 (419)
T PRK04043 170 NIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--------KEKIASSQGMLVVSD 239 (419)
T ss_pred eEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--------EEEEecCCCcEEeeE
Confidence 4444454333 233333333 6788999999985 554333 3568888887654 222223445556678
Q ss_pred EeeCCCcEEEEeeCC--CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC--ceEEEeCCCCCc
Q 016458 166 YVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASR 241 (389)
Q Consensus 166 ~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~ 241 (389)
|+|+|..++++.+.+ ..|.++|+.++...... .+........|+|++..++++....+ .|++.|+..+ .
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~ 312 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-S 312 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC-C
Confidence 999997666665544 56888898877644332 22223345679994444555544444 5777777655 2
Q ss_pred ceeEEeeeccceEEEEEecCCCEEEEEecC---------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (389)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (389)
. ..+..... ....|+|+|++|+..+.. ..|.+.|+.++... .+.... . .....|+|||+.|
T Consensus 313 ~-~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~-~-----~~~p~~SPDG~~I 382 (419)
T PRK04043 313 V-EQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANG-V-----NQFPRFSSDGGSI 382 (419)
T ss_pred e-EeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCC-C-----cCCeEECCCCCEE
Confidence 2 22221111 124899999998877653 36888898877543 332211 1 2357899999987
Q ss_pred EEEecCC---cEEEEEcccc
Q 016458 313 FAGYSNG---DCYVWDTLLA 329 (389)
Q Consensus 313 ~~~~~dg---~i~i~d~~~~ 329 (389)
+....++ .+.+.++...
T Consensus 383 ~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 383 MFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEEccCCcEEEEEEecCCC
Confidence 7665432 3666676443
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.27 E-value=1e-08 Score=89.57 Aligned_cols=273 Identities=14% Similarity=0.078 Sum_probs=162.7
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-E-E-----EEEECC--CCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-V-M-----TCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (389)
Q Consensus 78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-v-~-----~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (389)
.+..+++++.+|.+.-+|..+|+.+......... . . .+.-.| .+..++.++.+|.+.-+|.++++..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~---- 143 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVA---- 143 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCc----
Confidence 3558888888899999999999988776543310 0 0 000011 3566778888999999999876521
Q ss_pred cceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (389)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (389)
...... +.+.+--...+ ..++.++.++.|..+|..+++..................+.... + ..++.++.+
T Consensus 144 -W~~~~~---~~~~ssP~v~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~~ 214 (394)
T PRK11138 144 -WQTKVA---GEALSRPVVSD--GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--F-GGAIVGGDN 214 (394)
T ss_pred -ccccCC---CceecCCEEEC--CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--C-CEEEEEcCC
Confidence 111111 11111111112 35777888999999999999998877422100000000111111 2 346667788
Q ss_pred CceEEEeCCCCCcceeEEeeec----c---ceEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 229 STARLWDTRVASRAVRTFHGHE----G---DVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 229 g~i~i~d~~~~~~~~~~~~~~~----~---~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
|.+..+|..++ +..-...... . ....+..+| .+..+++++.+|.+..+|..+++.+.......
T Consensus 215 g~v~a~d~~~G-~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~------- 286 (394)
T PRK11138 215 GRVSAVLMEQG-QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS------- 286 (394)
T ss_pred CEEEEEEccCC-hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-------
Confidence 99999998876 3322221100 0 011111222 35567778889999999999998766543211
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
...+. ..+..+++++.+|.+..+|..+++.+...... .+ ....+... .+.+|+.++.||.+.+ .|..+|
T Consensus 287 ~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~-~~~~sp~v--~~g~l~v~~~~G~l~~----ld~~tG 355 (394)
T PRK11138 287 VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LH-RLLTAPVL--YNGYLVVGDSEGYLHW----INREDG 355 (394)
T ss_pred ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc--CC-CcccCCEE--ECCEEEEEeCCCEEEE----EECCCC
Confidence 11222 24667888889999999999999887755321 11 11122222 2457788899999998 888888
Q ss_pred ccc
Q 016458 380 ALS 382 (389)
Q Consensus 380 ~~~ 382 (389)
++.
T Consensus 356 ~~~ 358 (394)
T PRK11138 356 RFV 358 (394)
T ss_pred CEE
Confidence 764
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.25 E-value=1.5e-10 Score=88.30 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=109.4
Q ss_pred ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee-EEEeeCCCcEEEEEECCCCcEEEEecC-----CCcEEE
Q 016458 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAFSPTGQSVACGGL-----DSVCSI 135 (389)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~v 135 (389)
.+..|+++=.+-+.+-.++.++++..||.+.+++.+.-..+ ..+......-.+.++...++.+.++.. -+..+.
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYA 163 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceee
Confidence 34456655555555556778999999999999987652111 111111111222233334555554421 234566
Q ss_pred EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
|+++..+. ...... ....|.+++-+|...+++++|+.||.+-+||.++......+ ...|..++..+.|+
T Consensus 164 ~~~~p~~t------~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~----l~ahk~~i~eV~FH 232 (319)
T KOG4714|consen 164 NTLDPIKT------LIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL----LKAHKAEIWEVHFH 232 (319)
T ss_pred eccccccc------cccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH----HHHhhhhhhheecc
Confidence 66664221 111111 12338899999987788999999999999999987433332 27899999999999
Q ss_pred CCCCcEEEEeeCCCceEEEeCCC
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRV 238 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~ 238 (389)
|.++..|+++++||.+..||..+
T Consensus 233 pk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 233 PKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCCchheeEecCCCcEEEEcCCC
Confidence 99999999999999999999874
No 300
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.8e-08 Score=87.76 Aligned_cols=183 Identities=17% Similarity=0.190 Sum_probs=118.2
Q ss_pred ceEEEEEeeCCCcEEEE-eeC--CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC--CceEEE
Q 016458 160 YVSCCQYVPDEDTHLIT-SSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLW 234 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~-~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~ 234 (389)
....-.|+|++...++. ... +..|.++|+.+++..... ...+......|+|+...++++.+.+ ..|.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe------cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence 67788999998643443 332 467999999988766654 2344556678999444555555544 467777
Q ss_pred eCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CC--eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (389)
Q Consensus 235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (389)
|+..+ ....+..+........|+|||+.|+..+. .| .|.+.|+.+++....... .. ....|+|||++
T Consensus 263 dl~~g--~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~------~~~~~SPDG~~ 332 (419)
T PRK04043 263 DTNTK--TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK------NNSSVSTYKNY 332 (419)
T ss_pred ECCCC--cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC------cCceECCCCCE
Confidence 87654 24444444433445689999998877663 23 688888887765433321 11 12489999998
Q ss_pred EEEEecC---------CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458 312 LFAGYSN---------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (389)
Q Consensus 312 l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 364 (389)
|+..... ..|.+.|+.++... .+. . . .......|+|||+.|+....+
T Consensus 333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT---~-~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 333 IVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLT---A-N-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred EEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECC---C-C-CCcCCeEECCCCCEEEEEEcc
Confidence 8776543 36888898877643 332 1 1 223358899999988776654
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.3e-10 Score=93.09 Aligned_cols=291 Identities=17% Similarity=0.154 Sum_probs=195.0
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC---CCeeEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEEeCCC
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT---SQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNS 140 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~ 140 (389)
-|++.|+.+.... .+++.+++.||.++.|.-.. -+.+..+..|...+.+++.+.++.++.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 4888888887654 45999999999999997433 1233445567788899999999999999877 99999999987
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCC--cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDED--THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (389)
-.. .....+..-.+.+.. ..++... .+.++.-.+|.+.++|-....+...+.. ..|..+|..+.+++ .
T Consensus 86 ~Dm-----inmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk---klH~sPV~~i~y~q-a 155 (558)
T KOG0882|consen 86 FDM-----INMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK---KLHFSPVKKIRYNQ-A 155 (558)
T ss_pred cch-----hhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec---ccccCceEEEEeec-c
Confidence 331 111111111222221 1222111 2233444689999999876653322211 57889999999999 7
Q ss_pred CcEEEEeeCCCceEEEeCCCC-Ccc-------------eeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458 219 SRMFVSGSCDSTARLWDTRVA-SRA-------------VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (389)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~~-~~~-------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (389)
++.+++....|.|.-|..... +.+ +..+........++.|+|++..+.+-+.|..|++++.++++.
T Consensus 156 ~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 156 GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 888899999999999988731 000 111122345678999999999999999999999999999877
Q ss_pred eeEeeccCCC----------------------------CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeec
Q 016458 285 LQVYYQQHGE----------------------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 336 (389)
Q Consensus 285 ~~~~~~~~~~----------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 336 (389)
.+.+...... .....-+.++|...|++|+-|+-=| |++.++.++.....+.
T Consensus 236 vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 236 VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 6655322111 0111346678999999999887765 8999999888877663
Q ss_pred CcC--------------CCC---------CCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 337 SLQ--------------NSH---------EGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 337 ~~~--------------~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
... ..+ ..+. +.+.+|...++++-....+++
T Consensus 315 k~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~--~~~~~dpt~~c~a~kk~rfyl 368 (558)
T KOG0882|consen 315 KDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL--LEFQKDPTIVCTAFKKNRFYL 368 (558)
T ss_pred cchhhhhhhHHHHhhhhhccchhhhhhhccCcc--cccCCCCeEEEeeeecceEEE
Confidence 110 011 1122 235567777777777777777
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.22 E-value=4.4e-08 Score=79.54 Aligned_cols=223 Identities=19% Similarity=0.187 Sum_probs=137.3
Q ss_pred CCcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEE
Q 016458 88 DGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (389)
Q Consensus 88 dg~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 165 (389)
+|+|..||..+|+.+....... ....+. ..+++..+++++.++.+..||..+++ ....... ...+....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~-------~~W~~~~-~~~~~~~~ 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGK-------VLWRFDL-PGPISGAP 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSE-------EEEEEEC-SSCGGSGE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCC-------EEEEeec-ccccccee
Confidence 6889999999999998886522 222211 22356677777899999999998765 2222221 11111112
Q ss_pred EeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEe-cCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee
Q 016458 166 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR 244 (389)
Q Consensus 166 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 244 (389)
...+ ..++.++.++.|..+|..+++..... ................+ .++.++++..++.|..+|.+++ +.+.
T Consensus 73 ~~~~--~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG-~~~w 146 (238)
T PF13360_consen 73 VVDG--GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTG-KLLW 146 (238)
T ss_dssp EEET--TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTT-EEEE
T ss_pred eecc--cccccccceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCC-cEEE
Confidence 2232 45777778889999999999998874 21110111111222333 3567788888999999999988 5555
Q ss_pred EEeeeccc----------eEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458 245 TFHGHEGD----------VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (389)
Q Consensus 245 ~~~~~~~~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (389)
........ +..-....++ .++.++.++.+..+|+.+++...... ... +.. ....++..|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~-----~~~-~~~~~~~~l~~ 217 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISG-----IYS-LPSVDGGTLYV 217 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS------ECE-CEECCCTEEEE
T ss_pred EeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCC-----ccC-CceeeCCEEEE
Confidence 55443322 1122222244 77777777764444999998664222 111 222 13467788888
Q ss_pred EecCCcEEEEEcccceEEEe
Q 016458 315 GYSNGDCYVWDTLLAKVVLN 334 (389)
Q Consensus 315 ~~~dg~i~i~d~~~~~~~~~ 334 (389)
++.++.|..||+.+++....
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999999998764
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.20 E-value=8.2e-10 Score=98.60 Aligned_cols=180 Identities=22% Similarity=0.289 Sum_probs=138.8
Q ss_pred CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec
Q 016458 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 250 (389)
Q Consensus 171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 250 (389)
+..++.|+....+..+|+++.+..... ....+.|.-+.. +++++.+|...|+|.+-|.++. +.++.+.+|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-----~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTT-----NVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHS 217 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeee-----eccCCceEEEEe---cCcEEEeecccceEEeecCCcC-ceeeeeeccc
Confidence 356888888888999999998877766 233334555543 6689999999999999999998 8999999999
Q ss_pred cceEEEEEecCCCEEEEEec---------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC-CCEEEEEecCCc
Q 016458 251 GDVNTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGD 320 (389)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~ 320 (389)
+.|..+.. .|+.|+++|. |..|+|||++..+.+..+..+.++ .-+.|.|. ...+++.+..|.
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P------~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP------QFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc------hhhhhcccccceEEEEecccc
Confidence 99977666 6889998875 556899999998777666554432 45667775 347888889999
Q ss_pred EEEEEcc---cc-eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458 321 CYVWDTL---LA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR 375 (389)
Q Consensus 321 i~i~d~~---~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~ 375 (389)
..+-|.. +. .....+ ......+..+.++++|+.++.|..+|.|.+ |.
T Consensus 290 ~q~vd~~~lsNP~~~~~~v----~p~~s~i~~fDiSsn~~alafgd~~g~v~~----wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMV----NPNGSGISAFDISSNGDALAFGDHEGHVNL----WA 340 (1118)
T ss_pred eeeccccccCCCccceeEE----ccCCCcceeEEecCCCceEEEecccCcEee----ec
Confidence 9999933 32 122222 344556999999999999999999999999 97
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=1.4e-10 Score=101.09 Aligned_cols=216 Identities=16% Similarity=0.191 Sum_probs=153.6
Q ss_pred cceeeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCCC-eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcE
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQ-KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 133 (389)
.-.....+.||..+|+.+-|+|+. ..+++++.|-.+..||+.+.. .+.....-......++|+.....+.+.+....|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 345556788999999999999965 488999999999999998765 344444445567889999866666666677889
Q ss_pred EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
.+||++.+.. ....+++|...|..+.|..--...+.+.+.||+|+.||........... .....+|..-.
T Consensus 183 ~vwd~r~gs~------pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~----vtt~~piw~~r 252 (1081)
T KOG0309|consen 183 FVWDLRKGST------PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT----VTTNFPIWRGR 252 (1081)
T ss_pred EEEeccCCCc------ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee----ccccCcceecc
Confidence 9999987542 5677888999999999987655678999999999999987653322221 12333444444
Q ss_pred eeCCCCcE----------EEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC----------CCEEEEEecCCe
Q 016458 214 ISGSNSRM----------FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----------GNRFGTGSDDGT 273 (389)
Q Consensus 214 ~~~~~~~~----------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l~~~~~dg~ 273 (389)
+.|....+ +..-..+.....|+..+...++..+.+|...|....|-.. .-.|++=+.|..
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 44422222 2222223344455655666889999999998876666431 225899999999
Q ss_pred EEEEECCC
Q 016458 274 CRLFDIRT 281 (389)
Q Consensus 274 i~i~d~~~ 281 (389)
+++|-+.+
T Consensus 333 lrlWpI~~ 340 (1081)
T KOG0309|consen 333 LRLWPIDS 340 (1081)
T ss_pred eEeeeccH
Confidence 99998754
No 305
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.19 E-value=7.7e-10 Score=89.67 Aligned_cols=156 Identities=14% Similarity=0.254 Sum_probs=108.6
Q ss_pred EEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEecCCCEEEEEecCCe---EEEEECCCCceee
Q 016458 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDGT---CRLFDIRTGHQLQ 286 (389)
Q Consensus 212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~ 286 (389)
+..++ .+.+++++..+....+++.+...+....+. .-....+++.|..+......+..-|. +.+|....+....
T Consensus 68 ~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 68 VLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred cccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence 34444 788888888888887888776533121111 11223345555555555555544444 4444444333222
Q ss_pred EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCe
Q 016458 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 366 (389)
. ..|...++.++++||+++|+++..|+.|+|-.+.....+..+- .+|..-|..++.-++ ..|+++|.|++
T Consensus 147 ~------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc---lGH~eFVS~isl~~~-~~LlS~sGD~t 216 (390)
T KOG3914|consen 147 I------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC---LGHKEFVSTISLTDN-YLLLSGSGDKT 216 (390)
T ss_pred h------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc---cccHhheeeeeeccC-ceeeecCCCCc
Confidence 2 2344459999999999999999999999999887766666654 689999999999765 45899999999
Q ss_pred eEEeecceecccCccc
Q 016458 367 LKVNLGFWRVQEGALS 382 (389)
Q Consensus 367 i~i~~~~W~~~~~~~~ 382 (389)
+++ ||+.+|+..
T Consensus 217 lr~----Wd~~sgk~L 228 (390)
T KOG3914|consen 217 LRL----WDITSGKLL 228 (390)
T ss_pred EEE----EecccCCcc
Confidence 999 999999865
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.19 E-value=6.4e-08 Score=78.60 Aligned_cols=189 Identities=17% Similarity=0.205 Sum_probs=121.8
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE-Eeeec
Q 016458 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHE 250 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~ 250 (389)
..+++++.++.|..||..+++....+.. ...+...... .+..+++++.++.++.+|..++ +.+.. .....
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~------~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG-~~~W~~~~~~~ 107 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDL------PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTG-KVLWSIYLTSS 107 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEEC------SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTS-CEEEEEEE-SS
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeec------cccccceeee--cccccccccceeeeEecccCCc-ceeeeeccccc
Confidence 4677778999999999999998888742 1111111111 3445666678889999998888 44444 23221
Q ss_pred c---ceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC------eeEEEeCCCCCEEEEEecCCcE
Q 016458 251 G---DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH------VTSIAFSISGRLLFAGYSNGDC 321 (389)
Q Consensus 251 ~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------i~~~~~~~~~~~l~~~~~dg~i 321 (389)
. ..........+..++++..++.|..+|+++|+.+......... .... +..-....++ .+++++.++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~ 185 (238)
T PF13360_consen 108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR-GSSPISSFSDINGSPVISDG-RVYVSSGDGRV 185 (238)
T ss_dssp CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEECCTSSE
T ss_pred cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC-CCcceeeecccccceEEECC-EEEEEcCCCeE
Confidence 1 1122333334788999998999999999999998877663322 1111 1222222344 77777788864
Q ss_pred EEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
.-+|+.+++.+... . ...+..+ ...++..|+.++.++.+.. ||+.+|+..
T Consensus 186 ~~~d~~tg~~~w~~----~--~~~~~~~-~~~~~~~l~~~~~~~~l~~----~d~~tG~~~ 235 (238)
T PF13360_consen 186 VAVDLATGEKLWSK----P--ISGIYSL-PSVDGGTLYVTSSDGRLYA----LDLKTGKVV 235 (238)
T ss_dssp EEEETTTTEEEEEE----C--SS-ECEC-EECCCTEEEEEETTTEEEE----EETTTTEEE
T ss_pred EEEECCCCCEEEEe----c--CCCccCC-ceeeCCEEEEEeCCCEEEE----EECCCCCEE
Confidence 44499999977643 2 2223331 2356778888889999999 999999875
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.18 E-value=6.5e-08 Score=84.56 Aligned_cols=258 Identities=13% Similarity=0.043 Sum_probs=154.2
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecc--
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-- 156 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-- 156 (389)
+..++.++.+|.+..+|..+|+.+............... .+..++++..+|.+.-+|..+++. .-....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~-------~W~~~~~~ 190 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAV-------KWTVNLDV 190 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCE-------eeeecCCC
Confidence 346777788899999999999988877654321111111 245667777889999999987652 111111
Q ss_pred -------cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC--CCeeEEEeeC-CCCcEEEEee
Q 016458 157 -------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLSVSISG-SNSRMFVSGS 226 (389)
Q Consensus 157 -------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~-~~~~~l~~~~ 226 (389)
...++ .. + ..++.++.+|.+..+|..+++.............. .....+..+| -.+..+++++
T Consensus 191 ~~~~~~~~~sP~----v~-~--~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~ 263 (394)
T PRK11138 191 PSLTLRGESAPA----TA-F--GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA 263 (394)
T ss_pred CcccccCCCCCE----EE-C--CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE
Confidence 11111 11 2 24677788999999999999876654211100000 0000111111 0234566677
Q ss_pred CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (389)
Q Consensus 227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (389)
.+|.+..+|..++ +.+-... ......+.. .+..++.++.+|.+..+|..+++.+.......... ..+...
T Consensus 264 ~~g~l~ald~~tG-~~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~sp~v- 333 (394)
T PRK11138 264 YNGNLVALDLRSG-QIVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL----LTAPVL- 333 (394)
T ss_pred cCCeEEEEECCCC-CEEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc----ccCCEE-
Confidence 8899999999887 3332221 111112222 46678888899999999999987765432211111 111122
Q ss_pred CCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee-EEEECCCCCeEEeeeCCCeeEE
Q 016458 307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.+.+|++++.+|.++++|..+|+.+.... .....+. ...+ .+..|+.++.||.+..
T Consensus 334 -~~g~l~v~~~~G~l~~ld~~tG~~~~~~~----~~~~~~~s~P~~--~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 334 -YNGYLVVGDSEGYLHWINREDGRFVAQQK----VDSSGFLSEPVV--ADDKLLIQARDGTVYA 390 (394)
T ss_pred -ECCEEEEEeCCCEEEEEECCCCCEEEEEE----cCCCcceeCCEE--ECCEEEEEeCCceEEE
Confidence 25678889999999999999999888773 2222222 1122 2447888899999887
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.1e-09 Score=87.51 Aligned_cols=260 Identities=11% Similarity=0.005 Sum_probs=175.2
Q ss_pred CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-CCeEEEE
Q 016458 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLW 186 (389)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw 186 (389)
|...|+.+. ....+++.+++.||.++.|.-..-. -......+..|.+.|.+++.+.++ .++.+.+. |..++++
T Consensus 8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~is----GvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRIS----GVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEe-eehhheEEeeecchhhhhcCCCCcc----ceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEE
Confidence 444454443 3456789999999999999765411 223455667889999999999987 67888777 9999999
Q ss_pred eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC--cEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEEEEEecCCC
Q 016458 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNS--RMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGN 263 (389)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~ 263 (389)
|+++-..+..+.... .++. .++..++.+. .+.++...+|.+.++|-.... +....-.-|..+|.++.+.+-++
T Consensus 82 DvEn~DminmiKL~~---lPg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 82 DVENFDMINMIKLVD---LPGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred Eeeccchhhhccccc---CCCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 998876665543211 1111 1222222111 233344568999999987664 33344456899999999999999
Q ss_pred EEEEEecCCeEEEEECCC-Cc-----eeeEeecc----CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEE
Q 016458 264 RFGTGSDDGTCRLFDIRT-GH-----QLQVYYQQ----HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333 (389)
Q Consensus 264 ~l~~~~~dg~i~i~d~~~-~~-----~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 333 (389)
.+++....|.|.-|.... .+ ....+... .........+++.|+|+|..+.+-+.|..|+++++.+++.+.
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 999999999999999773 11 11111000 001122347899999999999999999999999999887766
Q ss_pred eecCcC----------------------------CCCC-CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 334 NLGSLQ----------------------------NSHE-GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 334 ~~~~~~----------------------------~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
.+.... ..|. ..-+.+.|...|++|+-|+-=| |++ .++.++...
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv----in~~tn~v~ 310 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV----INLDTNTVV 310 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE----EEeecCeEE
Confidence 553211 0122 2346678888999998887654 666 788877654
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.12 E-value=2.6e-10 Score=63.00 Aligned_cols=38 Identities=37% Similarity=0.866 Sum_probs=36.5
Q ss_pred eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEe
Q 016458 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~ 95 (389)
++.+++.+|.++|++|+|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.10 E-value=4.7e-07 Score=73.10 Aligned_cols=234 Identities=15% Similarity=0.167 Sum_probs=151.9
Q ss_pred EEEEEEcC-CCCeEEEEecCCc-EEEEeCCCCCeeEEEeeCCCcE--EEEEECCCCcEEEEec-----CCCcEEEEeCCC
Q 016458 70 VYSLDWTS-ERNRIVSASQDGR-LIVWNALTSQKTHAIKLPCAWV--MTCAFSPTGQSVACGG-----LDSVCSIFNLNS 140 (389)
Q Consensus 70 v~~~~~~~-~~~~l~~~~~dg~-v~iw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~-----~dg~i~vw~~~~ 140 (389)
.-.++.+| ....++.+-.-|+ ..+||..+++....+....+.- -.-.|+++|++|++.- ..|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34577888 4556677766654 6789999999888776554432 2468999999999863 358899999984
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee-----------------CCCeEEEEeCCCCeeEEEecCcccC
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----------------GDQTCVLWDITTGLRTSVFGGEFQS 203 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~ 203 (389)
.+.....+..|.-....+.+.|+++.+++.-+ .+-.+...|..+++.+...... ..
T Consensus 87 ------~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp-~~ 159 (305)
T PF07433_consen 87 ------GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP-PD 159 (305)
T ss_pred ------CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC-cc
Confidence 23355666666666677889999854444321 2345666677777776664211 02
Q ss_pred CCCCCeeEEEeeCCCCcEEEEeeCCC-------ceEEEeCCCCCcceeEE-------eeeccceEEEEEecCCCEEEEEe
Q 016458 204 GHTADVLSVSISGSNSRMFVSGSCDS-------TARLWDTRVASRAVRTF-------HGHEGDVNTVKFFPDGNRFGTGS 269 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~ 269 (389)
.|...+..+++.+ ++..++..-..| .|.+++... .+..+ ..-.+.+-+|++++++.++++.+
T Consensus 160 ~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 160 LHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred ccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence 3667899999987 555554433332 233333322 12222 22346788999999998876555
Q ss_pred -cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458 270 -DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (389)
Q Consensus 270 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (389)
..|.+.+||..++..+....... +..++-.+++ ++++. ..|.+..
T Consensus 236 PrGg~~~~~d~~tg~~~~~~~l~D-------~cGva~~~~~-f~~ss-G~G~~~~ 281 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRLLGSVPLPD-------ACGVAPTDDG-FLVSS-GQGQLIR 281 (305)
T ss_pred CCCCEEEEEECCCCCEeeccccCc-------eeeeeecCCc-eEEeC-CCccEEE
Confidence 67889999999998887665432 6777777666 44444 4455433
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=6.3e-10 Score=88.44 Aligned_cols=164 Identities=16% Similarity=0.233 Sum_probs=121.0
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-----eeEEEecC
Q 016458 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-----LRTSVFGG 199 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~ 199 (389)
++.+.+-.|-+-+++++. .+.+. .++.|.++.|...+ ++++.|+.+|.|..+|++.. .+...+
T Consensus 228 fs~G~sqqv~L~nvetg~--------~qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-- 295 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH--------QQSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-- 295 (425)
T ss_pred ecccccceeEEEEeeccc--------ccccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEE--
Confidence 444556677788887743 23333 56788999998876 79999999999999999875 333333
Q ss_pred cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc---eeEEeeeccceEE--EEEecCCCEEEEEecCCeE
Q 016458 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNT--VKFFPDGNRFGTGSDDGTC 274 (389)
Q Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i 274 (389)
-|.+.|+++.....++.+|++.+.+|.|.+||.|.. +. +.++.+|-+.-.- +-..+....+++++.|-..
T Consensus 296 ----yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 296 ----YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred ----EcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence 588899999888767788999999999999999976 44 7788888654332 2344566788899999999
Q ss_pred EEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458 275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (389)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (389)
+||.++.+..+.+++....... ..+.+++|.
T Consensus 371 RiWsl~~ghLl~tipf~~s~~e-~d~~sv~~~ 401 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPYSASE-VDIPSVAFD 401 (425)
T ss_pred EEEecccCceeeccCCCCcccc-ccccceehh
Confidence 9999999999888766543211 124455553
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.09 E-value=8.8e-07 Score=71.55 Aligned_cols=231 Identities=18% Similarity=0.184 Sum_probs=145.0
Q ss_pred EEEEEECC-CCcEEEEecCCCc-EEEEeCCCCCCCC-CCCcceeeecccccceEEEEEeeCCCcEEEEee-----CCCeE
Q 016458 112 VMTCAFSP-TGQSVACGGLDSV-CSIFNLNSPTDKD-GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----GDQTC 183 (389)
Q Consensus 112 v~~~~~~~-~~~~l~~~~~dg~-i~vw~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i 183 (389)
...++.+| ....++.+-.-|. ..+||..++.... ...+.-.-+.+| -.|+++| .+|++.- ..|.|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG-~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDG-RLLYTTENDYETGRGVI 79 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCC-CEEEEeccccCCCcEEE
Confidence 34567788 5556666666554 6678887765211 011122334445 4799998 5666643 35899
Q ss_pred EEEeCC-CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee------------------CCCceEEEeCCCCCccee
Q 016458 184 VLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS------------------CDSTARLWDTRVASRAVR 244 (389)
Q Consensus 184 ~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~ 244 (389)
-|||.. +...+..+ ..+.-....+.+.| ++..|+++. .+.++...|..++ ..+.
T Consensus 80 gVyd~~~~~~ri~E~-----~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~ 152 (305)
T PF07433_consen 80 GVYDAARGYRRIGEF-----PSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLE 152 (305)
T ss_pred EEEECcCCcEEEeEe-----cCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceee
Confidence 999999 66777777 56767778888998 665555542 2335566666666 4444
Q ss_pred E--E--eeeccceEEEEEecCCCEEEEEecCCe-------EEEEECCCCceeeEeeccC--CCCCCCCeeEEEeCCCCCE
Q 016458 245 T--F--HGHEGDVNTVKFFPDGNRFGTGSDDGT-------CRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRL 311 (389)
Q Consensus 245 ~--~--~~~~~~i~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~ 311 (389)
+ + ..|...|..+++.++|..++..-..|. |-+++. +..+..+.... ...-...+-++++++++.+
T Consensus 153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 4 3 237778999999999876665543332 333432 22222222211 1122346899999999998
Q ss_pred EEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 312 LFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 312 l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
+++++ ..|.+.+||..+++.+.... -..+..++-.+++ ++++.+.-.
T Consensus 231 ia~tsPrGg~~~~~d~~tg~~~~~~~------l~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAATGRLLGSVP------LPDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred EEEECCCCCEEEEEECCCCCEeeccc------cCceeeeeecCCc-eEEeCCCcc
Confidence 86665 45689999999999887662 2346777777776 666655433
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.4e-08 Score=82.68 Aligned_cols=258 Identities=12% Similarity=0.109 Sum_probs=152.8
Q ss_pred cCCCcceeeeecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC-cEEEEecC
Q 016458 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGL 129 (389)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~ 129 (389)
+.+.+++....+.+|...|..++|+|..+ ++..++.+.+|+|.|+++...+..+..+ ..+.+++|.-+. .++++|..
T Consensus 178 l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~ 256 (463)
T KOG1645|consen 178 LESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQ 256 (463)
T ss_pred eccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEecc
Confidence 44556666667788899999999999877 7888999999999999999999888888 679999998755 66788888
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC-----CcEEEEeeCCCeEEEEeCCCCe--eEEEecCccc
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTGL--RTSVFGGEFQ 202 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~ 202 (389)
+|.|.|||++.+...... ........+|..++..+.+ +.+++....+ +..|++.... ..... .
T Consensus 257 nG~VlvyD~R~~~~~~~e----~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vl----e 326 (463)
T KOG1645|consen 257 NGMVLVYDMRQPEGPLME----LVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVL----E 326 (463)
T ss_pred CceEEEEEccCCCchHhh----hhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccc----c
Confidence 999999999985522111 1111122344444443321 1233333332 4456554321 11111 1
Q ss_pred CCCCCCeeEEEeeCCCCcEEEEeeCCCc---eE---E-EeCCCCCcceeEEeee-ccc------eEEEEEecCCCEEE-E
Q 016458 203 SGHTADVLSVSISGSNSRMFVSGSCDST---AR---L-WDTRVASRAVRTFHGH-EGD------VNTVKFFPDGNRFG-T 267 (389)
Q Consensus 203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~---i~---i-~d~~~~~~~~~~~~~~-~~~------i~~~~~~~~~~~l~-~ 267 (389)
....+.+.++.+.+..+.+|++.-.+.. ++ . -|.+.+......-..+ .++ -..+.-.++.++++ +
T Consensus 327 le~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 327 LEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred cCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 3446677788888755666666544211 00 0 1111111111111111 000 01122223445554 4
Q ss_pred EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC-CC-CEEEEEecCCcEEEEEcc
Q 016458 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SG-RLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~~l~~~~~dg~i~i~d~~ 327 (389)
+...+.+.+||..+++....+.... +|.+++... ++ .+|++- .|..++||..+
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~~e------pv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLALSE------PVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred cCCcceeEEeccchhheeeecccCc------ceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 4566789999999999888876653 367766543 33 366655 45578888654
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.08 E-value=5.5e-09 Score=93.51 Aligned_cols=181 Identities=14% Similarity=0.179 Sum_probs=139.7
Q ss_pred CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
..++.|+-...+..+|+.+.+.........+.|.-++. +++++.+|...|+|.+-|.++.+ ....+..|.+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-------~iht~~aHs~ 218 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-------TIHTFDAHSG 218 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-------eeeeeecccc
Confidence 35666666667888898888887777766655666654 68899999999999999998754 7889999999
Q ss_pred ceEEEEEeeCCCcEEEEeeC---------CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCc
Q 016458 160 YVSCCQYVPDEDTHLITSSG---------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (389)
.|.++... | ++|+++|. |..|+|||++....+..+. -+ ....-+.|+|.-...+++++..|.
T Consensus 219 siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-----~~-~~P~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 219 SISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-----FP-YGPQFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred ceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCcc-----cc-cCchhhhhcccccceEEEEecccc
Confidence 99876664 3 67888774 5668999999877666552 22 223567788877888999999999
Q ss_pred eEEEe---CCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458 231 ARLWD---TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (389)
Q Consensus 231 i~i~d---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (389)
..+-| +.++...+..+......+..++++++++.++.|..+|.|.+|.
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99999 4443233344444555699999999999999999999999998
No 315
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=99.05 E-value=3e-06 Score=69.39 Aligned_cols=247 Identities=16% Similarity=0.199 Sum_probs=150.4
Q ss_pred EEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeCCC-cE------EEEEECCCCcEEEEec--CCCc
Q 016458 72 SLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPCA-WV------MTCAFSPTGQSVACGG--LDSV 132 (389)
Q Consensus 72 ~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~~-~v------~~~~~~~~~~~l~~~~--~dg~ 132 (389)
.+..+|+++.+++++ ..-.|.+||..+......+..+.. .. ...+++.+++++++.. -...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 366789999888754 234799999999998888777654 22 2356777887776653 3456
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-CCeeEEEecCcccCCCCCCeeE
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLS 211 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~ 211 (389)
|.|-|+...+ ....+.- . -|....|.++.-|.+-|.||.+.-..+. .|+........+.......+..
T Consensus 120 VtVVDl~~~k-------vv~ei~~--P--GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~ 188 (342)
T PF06433_consen 120 VTVVDLAAKK-------VVGEIDT--P--GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEH 188 (342)
T ss_dssp EEEEETTTTE-------EEEEEEG--T--SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S-
T ss_pred EEEEECCCCc-------eeeeecC--C--CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccc
Confidence 7777877643 3322221 1 1223335445668999999999999888 4444433222121222222233
Q ss_pred EEeeCCCCcEEEEeeCCCceEEEeCCCCCc-ceeEEee----------eccceEEEEEecCCCEEEEEecC---------
Q 016458 212 VSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG----------HEGDVNTVKFFPDGNRFGTGSDD--------- 271 (389)
Q Consensus 212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~d--------- 271 (389)
-++.. .+..++--+.+|.|+-.|+..... ....+.. -.+.-.-+++++..+.|++.-..
T Consensus 189 ~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp 267 (342)
T PF06433_consen 189 PAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP 267 (342)
T ss_dssp -EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred cceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence 34444 344444467889999988875521 1111110 11234558888866666654321
Q ss_pred -CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEE-ecCCcEEEEEcccceEEEeec
Q 016458 272 -GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAG-YSNGDCYVWDTLLAKVVLNLG 336 (389)
Q Consensus 272 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~~~~~~~ 336 (389)
..|.++|+.+++.+..+..... +.++..+.+.+ +|++. ..++.+.+||..+++.+.++.
T Consensus 268 gteVWv~D~~t~krv~Ri~l~~~------~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIPLEHP------IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEE------ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ceEEEEEECCCCeEEEEEeCCCc------cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 1488999999999988876432 77999998776 66554 457899999999999999885
No 316
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=99.03 E-value=2.5e-07 Score=79.33 Aligned_cols=283 Identities=11% Similarity=0.078 Sum_probs=146.7
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC--C
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD--G 146 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~ 146 (389)
.|+++.|.++..-|++|...|.|.||.+...+.-. .....+-....+.+- ...++.-.+-|+....... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999998899999999999999876543322 000011111111110 0011122233443321111 1
Q ss_pred CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc---cCCCCCCeeEEEeeC----CC-
Q 016458 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF---QSGHTADVLSVSISG----SN- 218 (389)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~----~~- 218 (389)
.+.....+....++|++++.+.-| +++.|..+|.+.|.|++....+..-.... .......++++.|.. .+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 123344455568999999998765 89999999999999998887776632211 123445677888762 12
Q ss_pred --CcEEEEeeCCCceEEEeCCC-C-CcceeE----EeeeccceEEEE-EecC--------------------CCEEEEEe
Q 016458 219 --SRMFVSGSCDSTARLWDTRV-A-SRAVRT----FHGHEGDVNTVK-FFPD--------------------GNRFGTGS 269 (389)
Q Consensus 219 --~~~l~~~~~dg~i~i~d~~~-~-~~~~~~----~~~~~~~i~~~~-~~~~--------------------~~~l~~~~ 269 (389)
.-.+++|+..|.+.+|.+-- . ..-... ...+.++|..+. ++.+ -+-+++..
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 24788999999999998752 1 111111 113445665554 3211 02244445
Q ss_pred cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC-----CCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCC
Q 016458 270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS-----ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 344 (389)
Q Consensus 270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (389)
.+..++++...+.+.......... ....+++- ..+..|++-..+|.+++|.+...+.+..+.........
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~-----~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPF-----LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-E-----EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred cccceEEEeCCCCcccceeecccc-----ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 567899999988776655542111 13334442 35667888899999999999999888887543233334
Q ss_pred CeeEEEECCCCCeEEeeeCCCe
Q 016458 345 RITCLGLSADGSALCTGSWDTN 366 (389)
Q Consensus 345 ~v~~~~~~~~~~~l~~~~~dg~ 366 (389)
.+....++++|..++-.+....
T Consensus 308 ~~~~ssis~~Gdi~~~~gpsE~ 329 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGPSEI 329 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SSSEE
T ss_pred cccccEECCCCCEEEEeCcccE
Confidence 5667788999998877765543
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=2.7e-08 Score=88.60 Aligned_cols=282 Identities=14% Similarity=0.137 Sum_probs=162.4
Q ss_pred EEEEEcCCCCeEEEEe----cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458 71 YSLDWTSERNRIVSAS----QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (389)
Q Consensus 71 ~~~~~~~~~~~l~~~~----~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (389)
+-..|+|...++|+++ ..|+|.||- ++|++.....-+- .+++++|+|..-.|+.|-.-|.+.+|......
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~-hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e---- 92 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV-HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE---- 92 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce-ehhhhccChHHHHHhhccccceeEEEecCCce----
Confidence 3457899888888876 458899985 5666544332221 26779999999999999999999999987643
Q ss_pred CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEE----------------EecCccc--------
Q 016458 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS----------------VFGGEFQ-------- 202 (389)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------~~~~~~~-------- 202 (389)
.......|+.+|..+.|+++| ..++++..-|.|.+|....-..+. .+.....
T Consensus 93 ---~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 93 ---THTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ---eeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 344556799999999999998 789999999999999765211111 1100000
Q ss_pred ----CCCCCCee------------EE--EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCE
Q 016458 203 ----SGHTADVL------------SV--SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 264 (389)
Q Consensus 203 ----~~~~~~v~------------~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (389)
.+....+- +. .-.| ++..++.++.+|+|+-.|-... ........ +. ..+-|.+...-
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~-~g~~F~~~~~~GtVyyvdq~g~--~~~V~k~d-S~-vQmLf~~~~ea 243 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLAERSDEKSGVP-KGTEFLFAGKSGTVYYVDQNGR--QRTVHKLD-SE-VQMLFMGYCEA 243 (1416)
T ss_pred hhhccCchhhhcccccCccchhhccccccCCC-CCcEEEEEcCCceEEEEcCCCc--EEEEEEcc-ch-HHHHHhcccce
Confidence 00000000 00 0012 5667888888999888875432 22222111 11 11222222222
Q ss_pred EEEEecCCeEEEEECC----------------CCce-----------eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458 265 FGTGSDDGTCRLFDIR----------------TGHQ-----------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (389)
Q Consensus 265 l~~~~~dg~i~i~d~~----------------~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (389)
+++.-.+-.+.++-+. .|.. +..-....+......+++++++..+..|..|..
T Consensus 244 i~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~ 323 (1416)
T KOG3617|consen 244 ISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTK 323 (1416)
T ss_pred EEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEeccc
Confidence 2222222222222111 0000 000000011112235899999999999999999
Q ss_pred CCcEEEEEccc-------ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458 318 NGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 318 dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 368 (389)
.|.+.+|--.. +.....+... ....+.|+.+.|.|-...++.-+....+.
T Consensus 324 ~gnv~~w~~v~~~f~g~p~~d~w~l~~~-~e~~g~I~~i~Wg~~k~~~avn~~~~v~l 380 (1416)
T KOG3617|consen 324 EGNVTIWLDVNKGFQGDPTIDVWTLNGK-RESLGKISLIRWGPIKSTAAVNTEEDVVL 380 (1416)
T ss_pred CCcEEEeeecCccccCCCCcceEEecCc-hhhccceEEEEeccccchhhhhhhhheee
Confidence 99999995322 1233444322 23446899999998655555554444333
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=4.1e-07 Score=81.46 Aligned_cols=209 Identities=10% Similarity=0.108 Sum_probs=136.7
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-EEEEEECCCCcEEEEecCCC-----cEEEEeCCCCC
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-VMTCAFSPTGQSVACGGLDS-----VCSIFNLNSPT 142 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~ 142 (389)
.|+| |++.+..++.|+.+|.|.+.+ ..-+.++.++.+... |..+....+..+|++.+.|+ .++||+++...
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 557888999999999998887 334444677777666 44443333446777766654 58999998754
Q ss_pred CCCCCCcce--eeecc-----cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC----CCeeEEEecCcccCCCCCCeeE
Q 016458 143 DKDGNLPVS--RMLSG-----HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT----TGLRTSVFGGEFQSGHTADVLS 211 (389)
Q Consensus 143 ~~~~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~v~~ 211 (389)
.... ..+. ..... ...++.+++.+.+- ..+++|-.+|.|..+.-. .+...... .....+|+.
T Consensus 104 ~n~s-P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-----~~~~~pITg 176 (933)
T KOG2114|consen 104 KNNS-PQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYS-----HRGKEPITG 176 (933)
T ss_pred CCCC-cceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeee-----ccCCCCcee
Confidence 2221 1122 12222 35678888888885 789999999999988532 11212211 456788999
Q ss_pred EEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (389)
Q Consensus 212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (389)
+++..+....+++++ ...|.+|.+.........+..|..++.|.++++....+++++. ..+.+||.........+.
T Consensus 177 L~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 177 LALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 999873333233333 4679999998554335557778889999999975554555543 479999988665555554
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=3.2e-07 Score=82.13 Aligned_cols=205 Identities=14% Similarity=0.145 Sum_probs=133.0
Q ss_pred EECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC-----eEEEEeCCC
Q 016458 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWDITT 190 (389)
Q Consensus 116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 190 (389)
+|++.+..++.|+.+|.|.+++-.- .....++.+...+...-+.-++..+|++.+.|+ .|++|+++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~--------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF--------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc--------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 4678899999999999988877543 233556666665333334444446777776654 599999875
Q ss_pred C------eeE---EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC---CCcceeEEeeeccceEEEEE
Q 016458 191 G------LRT---SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---ASRAVRTFHGHEGDVNTVKF 258 (389)
Q Consensus 191 ~------~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~i~~~~~ 258 (389)
- .+. ..+.... +..+.++.+++++. +-..+|+|-.+|.|..+.-+- .............+|+.+++
T Consensus 102 ~~~n~sP~c~~~~ri~~~~n-p~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKN-PTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred cCCCCCcceeeeeeeeccCC-CCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 3 222 2221111 23567788999997 688999999999999985321 11212222334568999999
Q ss_pred ecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
..+++.++.+..-..|.+|.+....+...... ++..++.|..+++...-+++++.. .+.+|+.....+...+
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld----~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLD----NNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAF 251 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeeec----cCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeee
Confidence 99888744444456899999884332222122 233358888888766645555444 6999998877777666
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.97 E-value=7.6e-07 Score=82.80 Aligned_cols=245 Identities=14% Similarity=0.131 Sum_probs=140.5
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
+.|.++.|..+.+.++.+..+|.|.+-|.++...... ..-...|.+++|+||+..++..+..+++.+-+-.-... ..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i--~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI--AE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee-eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch--hc
Confidence 5899999999999999999999999998777654433 33345699999999999999998888776654321000 00
Q ss_pred CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe--
Q 016458 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-- 225 (389)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-- 225 (389)
.+.... ....+....+-|-... + -+-|+ .|.....+.......... ....+.=+++.|-. ++.++++.
T Consensus 146 ~~L~~d-~~~~sk~v~VGwGrke-T-qfrgs-~gr~~~~~~~~~ek~~~~-----~~~~~~~~~IsWRg-Dg~~fAVs~~ 215 (1265)
T KOG1920|consen 146 KPLDAD-DERKSKFVNVGWGRKE-T-QFRGS-EGRQAARQKIEKEKALEQ-----IEQDDHKTSISWRG-DGEYFAVSFV 215 (1265)
T ss_pred cccccc-cccccccceecccccc-e-eeecc-hhhhcccccccccccccc-----hhhccCCceEEEcc-CCcEEEEEEE
Confidence 000000 0001112222332211 1 11111 111111111111100000 11223345788887 78888873
Q ss_pred ---eCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe---cCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 226 ---SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 226 ---~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
.....|++||.. + ..-..-....+.-.+++|-|.|..+++-. .|+.|.+|.-+ |-.-..+...... ....
T Consensus 216 ~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~-de~~ 291 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPL-DEKE 291 (1265)
T ss_pred eccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcc-cccc
Confidence 223789999976 2 22111122233446799999999988764 45679999843 4333333222221 2223
Q ss_pred eeEEEeCCCCCEEEE---EecCCcEEEEEcccc
Q 016458 300 VTSIAFSISGRLLFA---GYSNGDCYVWDTLLA 329 (389)
Q Consensus 300 i~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~ 329 (389)
+..++|+.++..|++ ......|++|-+.+-
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 899999999999988 444455999987764
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.95 E-value=2.1e-05 Score=68.30 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=83.2
Q ss_pred ceEEEEEeeCCCcEEEEee----CCCe----EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCce
Q 016458 160 YVSCCQYVPDEDTHLITSS----GDQT----CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 231 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~----~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 231 (389)
...++.|+-..++.+.+.. .+|. -.+|+...++...... ........+.+++++| +...++.|+.||+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsv--tsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSV--TSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEE--EEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 3456677765556665542 2333 3456665543222111 1135677899999999 78889999999999
Q ss_pred EEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 232 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 232 ~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
.+||.... +.......-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 284 iLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99998754 33333455668899999999999999999999999986543
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.2e-06 Score=76.86 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=104.7
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (389)
..|.--+++..+++++.|+.-|.+++|+-..+.....-. +..+.+..+..+++..++|.|+..|.|.++.+.... ...
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~-p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL-PRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC-CCc
Confidence 344444555677899999999999999977665543322 244556677889999999999999999999988733 222
Q ss_pred CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (389)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (389)
.......-..|...|++++|++++ ..+++|...|.|..-.+... ..............+.|..+.+. ...+|++..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl 188 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL 188 (726)
T ss_pred ceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechh-hhhccccceeeccCcceEEeecc--cceehHhhh
Confidence 222222334478999999999998 78999999999999888772 11111111113455677777776 444444433
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=3e-07 Score=81.69 Aligned_cols=188 Identities=15% Similarity=0.210 Sum_probs=132.4
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
..+.|++++ ++.|+.|+.+|.|++++..... .....|... ..+| .++++|+.||+|.|-.+.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---------~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---------KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc---------ccccccccc------ccCC-ceEEEecCCCcEEEeecc
Confidence 345666664 6789999999999999987521 233334333 3344 799999999999999998
Q ss_pred CCeeEEEecCcccCCCCCCeeEEEeeCC----CCcEEEEeeCCCceEEEeCCCCCcce-eEEeeeccceEEEEEecCCCE
Q 016458 190 TGLRTSVFGGEFQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNR 264 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~ 264 (389)
+......+ ....++.+++++|+ ..+.+++|+.-| +.++.-+-.+... ..+....++|.++.|. |++
T Consensus 102 ~~~~~~~~------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~l 172 (846)
T KOG2066|consen 102 TDDEITQY------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNL 172 (846)
T ss_pred CCccceeE------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcE
Confidence 88877765 56678999999994 356789999888 8787644322221 2455667899999995 778
Q ss_pred EEEEecCCeEEEEECCCCceeeEeeccCCCCC-CCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE-IPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
+|-++.+| |++||..+++.+..+........ ......+.|.++. .|+.|-.| +|.|..++
T Consensus 173 IAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 173 IAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred EEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 88776664 89999999888877765543211 1123567776554 55566444 78888876
No 324
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.90 E-value=1.4e-05 Score=66.96 Aligned_cols=276 Identities=17% Similarity=0.171 Sum_probs=137.0
Q ss_pred EEcCCCCeEEEEe-cCC--cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcc
Q 016458 74 DWTSERNRIVSAS-QDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (389)
Q Consensus 74 ~~~~~~~~l~~~~-~dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 150 (389)
+|.++|+.|+.++ .|| .+.+.|+.+++..+...+.........++|+++.++-...+..+.-.|+.+.+ .
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-------~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-------E 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---------E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-------E
Confidence 4677887655444 454 56666888887766655443333345667888887655555678888888744 3
Q ss_pred eeeecccccceEEEEEeeCCCcEEEEee-----------------------CCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 151 SRMLSGHKGYVSCCQYVPDEDTHLITSS-----------------------GDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
...+......+-...|..+.+...+.+. -.+.|...|+.+++....+ ....
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~------~~~~ 188 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF------EDTD 188 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE------EESS
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE------ecCc
Confidence 3334444445544566533222333321 1245677788888776665 3456
Q ss_pred CeeEEEeeCCCCcEEEEeeCC---C-ceEEEeCCCCCcceeEEeeec--cceEEEEEecCCCEEEEEe-----cCCeEEE
Q 016458 208 DVLSVSISGSNSRMFVSGSCD---S-TARLWDTRVASRAVRTFHGHE--GDVNTVKFFPDGNRFGTGS-----DDGTCRL 276 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~~d---g-~i~i~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-----~dg~i~i 276 (389)
.+..+.++|.+..+|+-|-+. . .-+||-++........+..+. ..+..=-|.|||..|.--+ .+..|.-
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence 678999999888888776542 2 136676554433333333332 2344556889998776533 2446778
Q ss_pred EECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC----------------cEEEEEcccceEEEeecC---
Q 016458 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----------------DCYVWDTLLAKVVLNLGS--- 337 (389)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~--- 337 (389)
+|+.++......... +...+..++||++++-=+.|. -|+++++..+........
T Consensus 269 ~d~~t~~~~~~~~~p-------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~s 341 (386)
T PF14583_consen 269 YDPDTGERRRLMEMP-------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTS 341 (386)
T ss_dssp E-TTT--EEEEEEE--------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE----
T ss_pred eCCCCCCceEEEeCC-------ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCc
Confidence 888887654432221 255677788998876533331 466778776654321110
Q ss_pred --cCCCCCC-CeeEEEECCCCCeEEeee-CCCeeEE
Q 016458 338 --LQNSHEG-RITCLGLSADGSALCTGS-WDTNLKV 369 (389)
Q Consensus 338 --~~~~~~~-~v~~~~~~~~~~~l~~~~-~dg~i~i 369 (389)
...++.. .=....|+|||++++-.| ..|...|
T Consensus 342 w~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~v 377 (386)
T PF14583_consen 342 WKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAV 377 (386)
T ss_dssp ---BTTBSSTT----EE-TTSSEEEEEE-TTSS-EE
T ss_pred ceeecCCCccCCCCCccCCCCCEEEEECCCCCCccE
Confidence 0011111 113578999999876555 4677666
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.89 E-value=6.2e-06 Score=74.04 Aligned_cols=278 Identities=14% Similarity=0.112 Sum_probs=158.0
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC------cEE--EEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcc
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA------WVM--TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 150 (389)
+..++.++.++.|.-.|..+++.+..+..... .+. .+... ++..++.++.+|.|.-+|.++++.. .
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~-----W 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQV-----W 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEe-----e
Confidence 34677788889999999999998877654332 000 01111 2267888888999999999886521 1
Q ss_pred eeeecccc---cceE-EEEEeeCCCcEEEEee---------CCCeEEEEeCCCCeeEEEecCcccCCC------------
Q 016458 151 SRMLSGHK---GYVS-CCQYVPDEDTHLITSS---------GDQTCVLWDITTGLRTSVFGGEFQSGH------------ 205 (389)
Q Consensus 151 ~~~~~~~~---~~v~-~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~------------ 205 (389)
......+. ..+. ...+.. ..++.++ .+|.+..+|..+++....+........
T Consensus 135 ~~~~~~~~~~~~~i~ssP~v~~---~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~ 211 (488)
T cd00216 135 KFGNNDQVPPGYTMTGAPTIVK---KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMW 211 (488)
T ss_pred eecCCCCcCcceEecCCCEEEC---CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCccee
Confidence 11111110 0011 111211 2344443 468899999999998887643110000
Q ss_pred --C-CCe-eEEEeeCCCCcEEEEeeCCC------------------ceEEEeCCCCCcceeEEe-e-ecc----ceEEEE
Q 016458 206 --T-ADV-LSVSISGSNSRMFVSGSCDS------------------TARLWDTRVASRAVRTFH-G-HEG----DVNTVK 257 (389)
Q Consensus 206 --~-~~v-~~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~-~-~~~----~i~~~~ 257 (389)
. ..+ .+.++.+ ....++.++.++ .|.-+|..++ +..-.+. . |.. ......
T Consensus 212 ~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG-~~~W~~~~~~~~~~~~~~~s~p~ 289 (488)
T cd00216 212 GPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG-KVKWFYQTTPHDLWDYDGPNQPS 289 (488)
T ss_pred cCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC-CEEEEeeCCCCCCcccccCCCCe
Confidence 0 001 1233443 445666676554 6888898887 4433332 1 110 000011
Q ss_pred Ee----cCCC---EEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE---------------
Q 016458 258 FF----PDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG--------------- 315 (389)
Q Consensus 258 ~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--------------- 315 (389)
+. -++. .+++++.+|.+...|.++++.+....... ..++.+| ..++++
T Consensus 290 ~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~ 359 (488)
T cd00216 290 LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--------QPMAYDP--GLVYLGAFHIPLGLPPQKKKR 359 (488)
T ss_pred EEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--------cccccCC--ceEEEccccccccCcccccCC
Confidence 11 1333 67888899999999999999887764421 1123333 233332
Q ss_pred ---ecCCcEEEEEcccceEEEeecCcCCCCC----CCe--eEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 316 ---YSNGDCYVWDTLLAKVVLNLGSLQNSHE----GRI--TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 316 ---~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~v--~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
..+|.+.-.|+.+++.+.+.......+. .+. ..+.. .+..|++++.||.++. +|..+|++..
T Consensus 360 ~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~a----ld~~tG~~lW 430 (488)
T cd00216 360 CKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRA----FDATTGKELW 430 (488)
T ss_pred CCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEE----EECCCCceee
Confidence 2467899999999998887743100000 111 12222 4567888899999999 9999987653
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.88 E-value=2e-06 Score=80.09 Aligned_cols=244 Identities=13% Similarity=0.125 Sum_probs=141.6
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
..|.++.|..+...++.+...|.|.+-|..+.. ......-...|.+++|+|++ ..++..+..+++.+-+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--------~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~- 138 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE--------LEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTK- 138 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc--------eeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEec-
Confidence 579999999999999999999999999877632 33334456789999999997 67777777777766432
Q ss_pred CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe
Q 016458 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 269 (389)
+-.++...+........+....+-|-. .... +-|+ .|.....+.....+.......+ ..=++|+|--||+++++..
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTq-frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGR-KETQ-FRGS-EGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred cccchhccccccccccccccceecccc-ccee-eecc-hhhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEE
Confidence 222222111000011122233333332 1111 1111 2222222221111111111111 2235689999999998843
Q ss_pred -----cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE---ecCCcEEEEEcccceEEEeecCcCCC
Q 016458 270 -----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG---YSNGDCYVWDTLLAKVVLNLGSLQNS 341 (389)
Q Consensus 270 -----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~ 341 (389)
....|++||-. +..-..-.... ..-.+++|-|.|..+++- ++|+.|.+|.- +|-....+......
T Consensus 215 ~~~~~~~RkirV~drE-g~Lns~se~~~-----~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~ 287 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GALNSTSEPVE-----GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPL 287 (1265)
T ss_pred EeccCCceeEEEeccc-chhhcccCccc-----ccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcc
Confidence 23789999966 33222221111 124679999999998885 34567999984 33333333222133
Q ss_pred CCCCeeEEEECCCCCeEEe---eeCCCeeEEeecceeccc
Q 016458 342 HEGRITCLGLSADGSALCT---GSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 342 ~~~~v~~~~~~~~~~~l~~---~~~dg~i~i~~~~W~~~~ 378 (389)
....|..++|+.++..|++ ......|++ |-+.+
T Consensus 288 de~~ve~L~Wns~sdiLAv~~~~~e~~~v~l----wt~~N 323 (1265)
T KOG1920|consen 288 DEKEVEELAWNSNSDILAVVTSNLENSLVQL----WTTGN 323 (1265)
T ss_pred cccchheeeecCCCCceeeeecccccceEEE----EEecC
Confidence 4445999999999999988 555555888 76654
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=1.6e-05 Score=61.71 Aligned_cols=105 Identities=11% Similarity=0.042 Sum_probs=69.0
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
|++++.|+..|.+++.+..+|.+...+.....--......+++..+.+|+.|+..+..|..+.. .....+...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-------cVykskcgG 135 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-------CVYKSKCGG 135 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-------eEEecccCC
Confidence 5678899999999999999998888777654322233456789999999999999999988633 222222222
Q ss_pred cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 191 (389)
+...+-+..| ++..|+.+...|.|.--+....
T Consensus 136 ~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 136 GTFVSPVIAP-GDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ceeccceecC-CCceEEEEeccceEEEEccCCC
Confidence 2222223333 2234666666677666665554
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.87 E-value=2.4e-09 Score=92.11 Aligned_cols=203 Identities=17% Similarity=0.207 Sum_probs=132.6
Q ss_pred cEEEEEEcCCC--CeEEEEecCCcEEEEeCCCCCee--EEEeeCCCcEEEEEECC-CCcEEEEec----CCCcEEEEeCC
Q 016458 69 KVYSLDWTSER--NRIVSASQDGRLIVWNALTSQKT--HAIKLPCAWVMTCAFSP-TGQSVACGG----LDSVCSIFNLN 139 (389)
Q Consensus 69 ~v~~~~~~~~~--~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~vw~~~ 139 (389)
.+.|+++.-+. ..++.|..+|.|.+-.......- ...+.+..+.++++|++ |.+.||+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 46677766543 47888999999999877654332 33456667899999998 566777763 35679999998
Q ss_pred CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
+.-....+...... +......+++|..+. +++++|.....+.++|++....... ......+..+.+.|...
T Consensus 138 s~ltvPke~~~fs~--~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~------svnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 138 SLLTVPKESPLFSS--STLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVS------SVNTKYVQGITVDPFSP 208 (783)
T ss_pred cccCCCcccccccc--ccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhh------hhhhhhcccceecCCCC
Confidence 85311111111111 133345578888654 7888898899999999984322221 12344677788888777
Q ss_pred cEEEEeeCCCceEEEe-CCCCCcceeEEeeecc----ceEEEEEecCC-CEEEEEe-cCCeEEEEECCC
Q 016458 220 RMFVSGSCDSTARLWD-TRVASRAVRTFHGHEG----DVNTVKFFPDG-NRFGTGS-DDGTCRLFDIRT 281 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~----~i~~~~~~~~~-~~l~~~~-~dg~i~i~d~~~ 281 (389)
+++++.. ||.|.+|| .++-..++..+...+. .+..++|+|.. ..+++.. ..++|+.+|+..
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7876655 99999999 5544444444432222 38899999932 2344444 567899999753
No 329
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.81 E-value=1.6e-09 Score=93.20 Aligned_cols=209 Identities=17% Similarity=0.224 Sum_probs=136.9
Q ss_pred CcEEEEEECCC--CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee----CCCeE
Q 016458 110 AWVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS----GDQTC 183 (389)
Q Consensus 110 ~~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i 183 (389)
..+.|+++..+ ...+++|..+|.|.+-.+...... ......++..++++++|++-..+.|++|- .|..+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL 131 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence 34667776553 357888999999999988774422 23445677889999999997556677663 36789
Q ss_pred EEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CC
Q 016458 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DG 262 (389)
Q Consensus 184 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 262 (389)
.|||+.++-....-...+.........+++|.. +.+++.+|.....+.++|+|........ -....+..+..+| .+
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSP 208 (783)
T ss_pred cceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCC
Confidence 999999873221111111122445566888884 8889999999999999999943222222 2334567788888 77
Q ss_pred CEEEEEecCCeEEEEE-CCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEE-EecCCcEEEEEcc
Q 016458 263 NRFGTGSDDGTCRLFD-IRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFA-GYSNGDCYVWDTL 327 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~-~~~dg~i~i~d~~ 327 (389)
+++++-. ||.|.+|| .+.-+................+..++|+|... .+++ .-..+.|+.+|+.
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 7887765 99999999 44433222222222222223588999999654 3333 3455789999875
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=6e-09 Score=93.14 Aligned_cols=202 Identities=18% Similarity=0.303 Sum_probs=145.0
Q ss_pred ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-C
Q 016458 150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-D 228 (389)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d 228 (389)
....+..|....+|++|+-.. +.|+.|+..|.|++|++.+|...... ..|...|+.+.-+. ++..+++.+. .
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~-dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSV-DGSTQLTSSSSS 1165 (1516)
T ss_pred cchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccc-----cccccccccccccC-Ccceeeeecccc
Confidence 345566788889999999875 78999999999999999999988887 78999999999887 5555554433 3
Q ss_pred C-ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458 229 S-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (389)
Q Consensus 229 g-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (389)
. ...+|++.....+.+.+.. -.++.|+..-..-+.|+......+||+.++..+.++......... .-+...|+|
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y-~~n~a~FsP 1240 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY-SNNLAHFSP 1240 (1516)
T ss_pred CchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh-hccccccCC
Confidence 3 5789999876566666653 356888876555566666678999999999988875443322111 236788999
Q ss_pred CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 308 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 308 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
+..+++ .|| .+||++..+.+..+. .....+ .-.|+|.|..++.-+. | ||+.+=++.
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~~aIh~FD----~ft~~~-~G~FHP~g~eVIINSE-----I----wD~RTF~lL 1296 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPEAIHRFD----QFTDYG-GGGFHPSGNEVIINSE-----I----WDMRTFKLL 1296 (1516)
T ss_pred CcceEe---eCc--eeeeeccHHHHhhhh----hheecc-cccccCCCceEEeech-----h----hhhHHHHHH
Confidence 988776 555 589998887777663 222222 2358898877765442 3 888776554
No 331
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.78 E-value=2.3e-08 Score=55.12 Aligned_cols=39 Identities=33% Similarity=0.620 Sum_probs=35.5
Q ss_pred ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458 329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR 375 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~ 375 (389)
++++.++ .+|.+.|++|+|+|++.+|++++.|+.|++ ||
T Consensus 1 g~~~~~~----~~h~~~i~~i~~~~~~~~~~s~~~D~~i~v----wd 39 (39)
T PF00400_consen 1 GKCVRTF----RGHSSSINSIAWSPDGNFLASGSSDGTIRV----WD 39 (39)
T ss_dssp EEEEEEE----ESSSSSEEEEEEETTSSEEEEEETTSEEEE----EE
T ss_pred CeEEEEE----cCCCCcEEEEEEecccccceeeCCCCEEEE----EC
Confidence 3566777 799999999999999999999999999999 97
No 332
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.77 E-value=6.9e-06 Score=65.52 Aligned_cols=209 Identities=15% Similarity=0.151 Sum_probs=117.9
Q ss_pred eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceE
Q 016458 153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232 (389)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (389)
.+.+-...+..++|.|+.+.++++....+.|..++.. ++.+..+.. ......-.+++.. ++.++++.-.++.+.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l----~g~~D~EgI~y~g-~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL----DGFGDYEGITYLG-NGRYVLSEERDQRLY 89 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-----SS-SSEEEEEE-S-TTEEEEEETTTTEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC----CCCCCceeEEEEC-CCEEEEEEcCCCcEE
Confidence 4445556799999999877888888889999999974 677776642 2245688888875 666666655689999
Q ss_pred EEeCCCCCcce-----eEEe-----eeccceEEEEEecCCCEEEEEecCCeEEEEECCC---CceeeEeec---cCCCCC
Q 016458 233 LWDTRVASRAV-----RTFH-----GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQ---QHGENE 296 (389)
Q Consensus 233 i~d~~~~~~~~-----~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~---~~~~~~ 296 (389)
++++......+ ..+. .++..+-.++|+|.++.|+++-...-..+|.++. ...+..... ......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 99884432211 1111 2445689999999888888887776667777654 222211111 001112
Q ss_pred CCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEEeecCcCCCC-----CCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 297 IPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-----EGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 297 ~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
...+.+++++|.. .+++.+..+..|..+| ..|+++..+......| -.....|+|+++|.+.+ .+.-+.+++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~ 246 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYR 246 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEE
Confidence 2247899999864 5666677778899999 5677665553221111 13578999999996544 456555554
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1.8e-06 Score=77.01 Aligned_cols=161 Identities=18% Similarity=0.229 Sum_probs=111.9
Q ss_pred cccccCcEEEEEEcC-------------CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC-----CcEE
Q 016458 63 LQGHAGKVYSLDWTS-------------ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-----GQSV 124 (389)
Q Consensus 63 l~~h~~~v~~~~~~~-------------~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l 124 (389)
|..|.+.|.-..+.- +|.++++|+.||+|.|-.+-+.+...++..+ .++.+++++|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhhe
Confidence 444666555555443 4899999999999999999998888877765 56999999997 5789
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG 204 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 204 (389)
++|+..| +.++.-+=-... ....+..-.++|.++.|.. ++++-++.+| |++||..+.+.+..++......
T Consensus 133 v~GG~ag-lvL~er~wlgnk-----~~v~l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~ 202 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNK-----DSVVLSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSV 202 (846)
T ss_pred eecCcce-EEEehhhhhcCc-----cceeeecCccceEEEEecC---cEEEEecCCC-cEEEeccccceeeccCCCCCCC
Confidence 9999988 777654321110 1124555678999999974 5677666665 8999999998888775432111
Q ss_pred -CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC
Q 016458 205 -HTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (389)
Q Consensus 205 -~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 237 (389)
.......+.|.+ + ..|+.| ...+|++..++
T Consensus 203 R~e~fpphl~W~~-~-~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 203 RPELFPPHLHWQD-E-DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CcccCCCceEecC-C-CeEEEe-cCCeEEEEEEe
Confidence 122345677775 3 345544 44578888887
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.76 E-value=2.8e-05 Score=63.85 Aligned_cols=267 Identities=16% Similarity=0.138 Sum_probs=157.5
Q ss_pred CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec----------CCCcEEEEeCCCCCCCCCCCcceee--ecc
Q 016458 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRM--LSG 156 (389)
Q Consensus 89 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~--~~~ 156 (389)
+.+.++|..+++.+-.+...- .-.+..+|+++.++++. ..-.|.+||..+-. .... +..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~-------~~~EI~iP~ 87 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS-------PTGEIEIPP 87 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-------EEEEEEETT
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-------ccceEecCC
Confidence 479999999999887777543 33466799999988753 23469999998743 1111 111
Q ss_pred -cc----cceEEEEEeeCCCcEEEE--eeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458 157 -HK----GYVSCCQYVPDEDTHLIT--SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (389)
Q Consensus 157 -~~----~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (389)
|. .....+.++.++ ++++. .+-...|.|.|+..++.+..+.. ..+..+ .|..+.-|.+-+.||
T Consensus 88 k~R~~~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-------PGC~~i--yP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 88 KPRAQVVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDT-------PGCWLI--YPSGNRGFSMLCGDG 157 (342)
T ss_dssp S-B--BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEG-------TSEEEE--EEEETTEEEEEETTS
T ss_pred cchheecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecC-------CCEEEE--EecCCCceEEEecCC
Confidence 00 111224566665 33333 23345677888888887777621 122222 333445577888999
Q ss_pred ceEEEeCCCCCcceeEEee----eccc-eEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC-------CCC
Q 016458 230 TARLWDTRVASRAVRTFHG----HEGD-VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEI 297 (389)
Q Consensus 230 ~i~i~d~~~~~~~~~~~~~----~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~ 297 (389)
.+.-..+...++....... ...+ +..-++...+..++..+.+|.|+--|+........-...... =..
T Consensus 158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP 237 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP 237 (342)
T ss_dssp CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred ceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence 9999998865555432211 1111 223344555566776888999999998765532221111000 001
Q ss_pred CCeeEEEeCCCCCEEEEEec---CC-------cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC-eEEee-eCCC
Q 016458 298 PHVTSIAFSISGRLLFAGYS---NG-------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTG-SWDT 365 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg 365 (389)
....-+++++..+.|++--. +| .|.++|+.+++.+..+. -..++.+|+.+.+.+ +|++. ..++
T Consensus 238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~-----l~~~~~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP-----LEHPIDSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE-----EEEEESEEEEESSSS-EEEEEETTTT
T ss_pred cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe-----CCCccceEEEccCCCcEEEEEcCCCC
Confidence 12345778776665555322 11 48888999999999883 234688999998766 55554 4579
Q ss_pred eeEEeecceecccCcccC
Q 016458 366 NLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 366 ~i~i~~~~W~~~~~~~~~ 383 (389)
.+.+ ||..+|++..
T Consensus 313 ~l~v----~D~~tGk~~~ 326 (342)
T PF06433_consen 313 TLDV----YDAATGKLVR 326 (342)
T ss_dssp EEEE----EETTT--EEE
T ss_pred eEEE----EeCcCCcEEe
Confidence 9999 9999998764
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.73 E-value=0.00011 Score=64.17 Aligned_cols=235 Identities=7% Similarity=0.069 Sum_probs=121.7
Q ss_pred EEEcCCCCeEEEEecC----------C-cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458 73 LDWTSERNRIVSASQD----------G-RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (389)
Q Consensus 73 ~~~~~~~~~l~~~~~d----------g-~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (389)
++.+|.|..+|....+ . .|.||+ ..|+.+..+....+.+.++.|+.+.. |++-..||.+++||+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCc
Confidence 3445555555554333 2 599998 46788888887778999999988655 556668999999998642
Q ss_pred CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEe---cCcccCCCC-CCeeE-EEee
Q 016458 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVF---GGEFQSGHT-ADVLS-VSIS 215 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---~~~~~~~~~-~~v~~-~~~~ 215 (389)
. ............-....+....+..+| ++.-..++.+.+.+-.... ....+ +......+. ..... ..++
T Consensus 112 ~-~fsl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 112 F-QFSLGEEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred e-eechhhhccccCcccccccccccCCCC---EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 2 000000011111111222233333344 3333344444444322211 11111 100000000 01111 1223
Q ss_pred CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 295 (389)
. +....+....++.+.+.+-... .. +. ..+++..++.||+++++|.-..+|.+.+.+..-.+....+....
T Consensus 188 ~-~~~~~i~~~~g~~i~~i~~~~~-~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~--- 258 (410)
T PF04841_consen 188 S-DRVVEILLANGETIYIIDENSF-KQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS--- 258 (410)
T ss_pred c-CcceEEEEecCCEEEEEEcccc-cc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc---
Confidence 2 3334444445556664443321 11 11 24689999999999999999999999999876665555554431
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (389)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (389)
......+.|+-+...++.- +..+.+..
T Consensus 259 -~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 259 -KSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred -CCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 1235778887554332222 33455554
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.73 E-value=6.6e-06 Score=73.02 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=86.9
Q ss_pred CCcEEEEeeCCCceEEEeCCC----CCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCce--------
Q 016458 218 NSRMFVSGSCDSTARLWDTRV----ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQ-------- 284 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-------- 284 (389)
++++... .++.|.+.|.++ ....+. .-.-......+.++|||+++++++ .+.+|.++|+.+.+.
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~-yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTR-YVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEE-EEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 4455444 357899999987 223333 333455678999999999987766 588999999987553
Q ss_pred ----eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc----------ceEEEeec-CcCCCCCCCeeEE
Q 016458 285 ----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----------AKVVLNLG-SLQNSHEGRITCL 349 (389)
Q Consensus 285 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~-~~~~~~~~~v~~~ 349 (389)
........ .....+|+++|+...+-..|..|..||+.. ...+..+. ....+|.....+=
T Consensus 364 ~~~vvaevevGl------GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~ 437 (635)
T PRK02888 364 RDAVVAEPELGL------GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE 437 (635)
T ss_pred cceEEEeeccCC------CcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence 22222211 245678999998877888899999999876 23333331 1112232222222
Q ss_pred EECCCCCeEEeee
Q 016458 350 GLSADGSALCTGS 362 (389)
Q Consensus 350 ~~~~~~~~l~~~~ 362 (389)
.-.|||++|++..
T Consensus 438 t~~~dgk~l~~~n 450 (635)
T PRK02888 438 TKEADGKWLVSLN 450 (635)
T ss_pred cCCCCCCEEEEcc
Confidence 2367888888865
No 337
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.70 E-value=6.4e-05 Score=58.42 Aligned_cols=184 Identities=15% Similarity=0.053 Sum_probs=105.2
Q ss_pred CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
.+++.|+..+.+.--|..+|+........ ..+.+-+.- -|++++.|+.+|.+++.+.+++. ....+.. .+
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs-------~~w~f~~-~~ 93 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS-------QIWNFVI-LE 93 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchh-------heeeeee-hh
Confidence 47788888899998999888876554322 122222211 47789999999999999998864 1111111 11
Q ss_pred ceEE-EEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC
Q 016458 160 YVSC-CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238 (389)
Q Consensus 160 ~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 238 (389)
.|.+ ....+++ .++..|+.|+..+..|..+..++... +-......+-+..| ....|+.+...|.+.--..+.
T Consensus 94 ~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVyks-----kcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 94 TVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKS-----KCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred hhccceEEcCCC-ceEEEecCCCcEEEecccccceEEec-----ccCCceeccceecC-CCceEEEEeccceEEEEccCC
Confidence 2222 2234454 68999999999999999998888775 22333333444555 333444455556554444432
Q ss_pred CCcceeEEeee--ccceEE--EEEecCCCEEEEEecCCeEEEEECCCCceee
Q 016458 239 ASRAVRTFHGH--EGDVNT--VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (389)
Q Consensus 239 ~~~~~~~~~~~--~~~i~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (389)
. +...+-.| .++|.+ ++ -+..+..+.-||.+.-+| ..|+.+.
T Consensus 167 ~--~~~~~w~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvw 212 (354)
T KOG4649|consen 167 Y--SSTEFWAATRFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVW 212 (354)
T ss_pred C--CcceehhhhcCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEE
Confidence 2 22222222 122221 11 133455556666666666 4454444
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.70 E-value=0.00011 Score=66.01 Aligned_cols=243 Identities=16% Similarity=0.186 Sum_probs=138.1
Q ss_pred CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc--EEEEEECC--CCcEEEEec---------CCCcEEEEeCCCCCCCCC
Q 016458 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAW--VMTCAFSP--TGQSVACGG---------LDSVCSIFNLNSPTDKDG 146 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~---------~dg~i~vw~~~~~~~~~~ 146 (389)
..++.++.+|.|.-+|.++|+.+......... -..+.-+| .+..++.++ .+|.+.-+|..+++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~-- 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL-- 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee--
Confidence 57788888999999999999998877654321 01111112 124454543 3577888888775521
Q ss_pred CCcceeeec-----------------ccc-cce-EEEEEeeCCCcEEEEeeCCC------------------eEEEEeCC
Q 016458 147 NLPVSRMLS-----------------GHK-GYV-SCCQYVPDEDTHLITSSGDQ------------------TCVLWDIT 189 (389)
Q Consensus 147 ~~~~~~~~~-----------------~~~-~~v-~~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~ 189 (389)
...... .+. ..+ ....+.+.+ ..++.++.++ .|.-+|..
T Consensus 189 ---W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~ 264 (488)
T cd00216 189 ---WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD 264 (488)
T ss_pred ---eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence 000000 000 011 122333333 4566666554 79999999
Q ss_pred CCeeEEEecCcccC-----CCCCC-eeEEE-eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458 190 TGLRTSVFGGEFQS-----GHTAD-VLSVS-ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (389)
Q Consensus 190 ~~~~~~~~~~~~~~-----~~~~~-v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (389)
+++....+...... ....+ +..+. ........+++++.+|.+..+|.+++ +.+-..... ...++.+|
T Consensus 265 tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~---~~~~~~~~-- 338 (488)
T cd00216 265 TGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEV---EQPMAYDP-- 338 (488)
T ss_pred CCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEee---ccccccCC--
Confidence 99998887421100 00000 11111 11101136778888999999999988 444333211 11233344
Q ss_pred CEEEEE------------------ecCCeEEEEECCCCceeeEeeccCCCCC---CCCe--eEEEeCCCCCEEEEEecCC
Q 016458 263 NRFGTG------------------SDDGTCRLFDIRTGHQLQVYYQQHGENE---IPHV--TSIAFSISGRLLFAGYSNG 319 (389)
Q Consensus 263 ~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~i--~~~~~~~~~~~l~~~~~dg 319 (389)
..++.+ ..+|.+.-.|+.+++.+........... ..+. ..+. ..+..|++++.||
T Consensus 339 ~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG 416 (488)
T cd00216 339 GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADG 416 (488)
T ss_pred ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCC
Confidence 233332 2468899999999988877654311000 0001 1122 2567899999999
Q ss_pred cEEEEEcccceEEEeec
Q 016458 320 DCYVWDTLLAKVVLNLG 336 (389)
Q Consensus 320 ~i~i~d~~~~~~~~~~~ 336 (389)
.|+.+|..+|+.+.+..
T Consensus 417 ~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 417 YFRAFDATTGKELWKFR 433 (488)
T ss_pred eEEEEECCCCceeeEEE
Confidence 99999999999998874
No 339
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=0.00019 Score=62.31 Aligned_cols=269 Identities=17% Similarity=0.135 Sum_probs=167.6
Q ss_pred EEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC
Q 016458 91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD 169 (389)
Q Consensus 91 v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (389)
+.+++..+......+.... ....+...+++..+..... ...+...+..... .......-......+..++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-------~~~~~~~g~~~p~~i~v~~~ 84 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-------VTQSLSVGGVYPAGVAVNPA 84 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccce-------eeeeccCCCccccceeeCCC
Confidence 5666655555555544443 4667778888855554432 2234444333110 11111111133456788888
Q ss_pred CCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee--CCCceEEEeCCCCCcceeEEe
Q 016458 170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFH 247 (389)
Q Consensus 170 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~ 247 (389)
+.+.++....+..|.+.|..+........ .......++++|.++.+.++-. .++.+.+.|..+. .......
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~------vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~~~~ 157 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATNTVLGSIP------VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIP 157 (381)
T ss_pred CCeEEEecCCCCeEEEEcCcccceeeEee------eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEEEEe
Confidence 86677777778999999988877776663 2226778899984445555444 3688999998876 4444443
Q ss_pred eeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEE
Q 016458 248 GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYV 323 (389)
Q Consensus 248 ~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i 323 (389)
.-..+ ..++++|+|..+++.. .++.|.+.|........ -..............+.++|+|+++++.... +.+..
T Consensus 158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 33334 8899999999666555 78899999977655443 1111111111234778999999977776554 58999
Q ss_pred EEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC-CeeEEeecceecccCcccC
Q 016458 324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~~~~W~~~~~~~~~ 383 (389)
.|..++........ .... ....+..+|+|.++.+.... +.+.+ =|..+..+..
T Consensus 236 id~~~~~v~~~~~~--~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~v----id~~~~~v~~ 289 (381)
T COG3391 236 IDTATGNVTATDLP--VGSG-APRGVAVDPAGKAAYVANSQGGTVSV----IDGATDRVVK 289 (381)
T ss_pred EeCCCceEEEeccc--cccC-CCCceeECCCCCEEEEEecCCCeEEE----EeCCCCceee
Confidence 99988887765211 1222 45678899999998887444 67777 6666655443
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.67 E-value=5.2e-05 Score=60.57 Aligned_cols=212 Identities=14% Similarity=0.177 Sum_probs=119.4
Q ss_pred eeecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458 60 CRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (389)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (389)
.+.+.+-.+.++.++|+|+.+ ++++....+.|...+. +|+.+..+.... +..-.+++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 346777777899999999765 5566667788887885 578888877654 5688899988888888777789999999
Q ss_pred CCCCCCCCCCCcceeee-----cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC---CeeEEEecC---cccCCCC
Q 016458 138 LNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---GLRTSVFGG---EFQSGHT 206 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~---~~~~~~~ 206 (389)
+......... .....+ ..++..+-.++|.+.++. |+.+-......+|.+.. ......... .......
T Consensus 93 ~~~~~~~~~~-~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 93 IDDDTTSLDR-ADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp E----TT--E-EEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred Eeccccccch-hhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 8553311100 001111 134556899999998754 55555655566665543 111111100 0012344
Q ss_pred CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec---------cceEEEEEecCCCEEEEEecCCeEEEE
Q 016458 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE---------GDVNTVKFFPDGNRFGTGSDDGTCRLF 277 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~ 277 (389)
..+.+++++|..+++++.+..+..|..+|.. + +++..+.-.. ...-.|+|.++|++.++ +.-+..++|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQ-G-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEECCC-C-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 5688999999888999999999999999954 3 4444443222 24678999999865444 455555554
No 341
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.66 E-value=2.8e-05 Score=66.94 Aligned_cols=269 Identities=17% Similarity=0.183 Sum_probs=137.1
Q ss_pred cCCCCeEEEEe---------cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458 76 TSERNRIVSAS---------QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (389)
Q Consensus 76 ~~~~~~l~~~~---------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (389)
|||+++++... ..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-- 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-- 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE--
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE--
Confidence 67888777642 346789999998665443333 45688999999999998885 578999987654310
Q ss_pred CCcceeeecc-------c---------ccceEEEEEeeCCCcEEEEeeCCCe----------------------------
Q 016458 147 NLPVSRMLSG-------H---------KGYVSCCQYVPDEDTHLITSSGDQT---------------------------- 182 (389)
Q Consensus 147 ~~~~~~~~~~-------~---------~~~v~~~~~~~~~~~~l~~~~~dg~---------------------------- 182 (389)
..+..+ - -+.-..+-|+|++..+++.--.+..
T Consensus 77 ----~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 77 ----QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp ----ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred ----EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 001111 0 1123457899988544333333332
Q ss_pred -------EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc-EEEEe-eCC---CceEEEeCCCCCcceeEEeeec
Q 016458 183 -------CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVSG-SCD---STARLWDTRVASRAVRTFHGHE 250 (389)
Q Consensus 183 -------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~-~~d---g~i~i~d~~~~~~~~~~~~~~~ 250 (389)
+.++|+.+++....-...........+..+.|.+ ++. +++.- ..+ ..+.++|..++...........
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 2334444443321110000012345577888888 555 33332 222 2456667765522222222222
Q ss_pred cce---EEEEEe-cCCC-EEEEEecCCe--EEEEECCCCceeeEeeccCCCCCCCCeeE-EEeCCCCCEEE-EEecC--C
Q 016458 251 GDV---NTVKFF-PDGN-RFGTGSDDGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTS-IAFSISGRLLF-AGYSN--G 319 (389)
Q Consensus 251 ~~i---~~~~~~-~~~~-~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~-~~~~d--g 319 (389)
..| ....|. +++. +|.....||. |.+++...+. ...+....- .|.. +.++++++.|+ ++..+ +
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~-----~V~~i~~~d~~~~~iyf~a~~~~p~ 305 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDW-----EVTSILGWDEDNNRIYFTANGDNPG 305 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS------EEEEEEEECTSSEEEEEESSGGTT
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCce-----eecccceEcCCCCEEEEEecCCCCC
Confidence 222 245554 5554 4445556775 5555655444 223322222 2544 67888877554 44432 2
Q ss_pred --cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458 320 --DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 320 --~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
.|+.-++..+..+..+.. ..+.-..+.|||+|++++....
T Consensus 306 ~r~lY~v~~~~~~~~~~LT~----~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 306 ERHLYRVSLDSGGEPKCLTC----EDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SBEEEEEETTETTEEEESST----TSSTTEEEEE-TTSSEEEEEEE
T ss_pred ceEEEEEEeCCCCCeEeccC----CCCCceEEEECCCCCEEEEEEc
Confidence 455556662344455532 2222268999999998876543
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.55 E-value=2.2e-05 Score=69.86 Aligned_cols=220 Identities=11% Similarity=-0.005 Sum_probs=130.6
Q ss_pred EcCCCCeEEE-EecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC----cEEEEeCCCCCCCCCCCc
Q 016458 75 WTSERNRIVS-ASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS----VCSIFNLNSPTDKDGNLP 149 (389)
Q Consensus 75 ~~~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~vw~~~~~~~~~~~~~ 149 (389)
++|||+.+.. .-..+.+.+.|.++.+...++.... ....++++|+|+++++.+.+. .+..-+.... .
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-----d-- 271 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-----D-- 271 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccC-----c--
Confidence 4456654432 2234667777888877777776654 457789999999998886432 1222221110 0
Q ss_pred ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC-----CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE
Q 016458 150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (389)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 224 (389)
....+.-. .+ -.+.++|. +... .++.|.+.|..+ ......+ .-......+.++|+...++++
T Consensus 272 ~~vvfni~--~i--ea~vkdGK-~~~V--~gn~V~VID~~t~~~~~~~v~~yI------PVGKsPHGV~vSPDGkylyVa 338 (635)
T PRK02888 272 WVVVFNIA--RI--EEAVKAGK-FKTI--GGSKVPVVDGRKAANAGSALTRYV------PVPKNPHGVNTSPDGKYFIAN 338 (635)
T ss_pred eEEEEchH--HH--HHhhhCCC-EEEE--CCCEEEEEECCccccCCcceEEEE------ECCCCccceEECCCCCEEEEe
Confidence 11111000 00 02344553 3333 367899999988 3444444 345667889999955555556
Q ss_pred eeCCCceEEEeCCCCCc-----------ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC----------Cc
Q 016458 225 GSCDSTARLWDTRVASR-----------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT----------GH 283 (389)
Q Consensus 225 ~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~ 283 (389)
+..++++.++|+.+... ......- .......+|.++|+...+..-|..|..|++.. ..
T Consensus 339 nklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~ 417 (635)
T PRK02888 339 GKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDP 417 (635)
T ss_pred CCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCc
Confidence 66799999999987532 1122221 22345688999999888889999999999876 23
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
.+..+..+....|......=.-.|+|++|++..
T Consensus 418 v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 418 IVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 344444444433322222223467888888764
No 343
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.55 E-value=0.00027 Score=61.85 Aligned_cols=180 Identities=12% Similarity=0.107 Sum_probs=94.9
Q ss_pred cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc--CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeC
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ--SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 236 (389)
+.+.++.|..+. .|+....||.+++||+.... ...+..... ......+....+.. +| + +.-+.++.+.+.+-
T Consensus 81 ~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~G-i-vvLt~~~~~~~v~n 154 (410)
T PF04841_consen 81 GRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NG-I-VVLTGNNRFYVVNN 154 (410)
T ss_pred CCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC-CC-E-EEECCCCeEEEEeC
Confidence 789999998853 57788899999999987443 111111100 01111122222221 33 2 22233454544432
Q ss_pred CCCCcceeEEe----------eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458 237 RVASRAVRTFH----------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (389)
Q Consensus 237 ~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (389)
-........+. .+........++.+....+....++.+.+.+-...+. + ....++..+++|
T Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i------~~~~~i~~iavS 225 (410)
T PF04841_consen 155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I------DSDGPIIKIAVS 225 (410)
T ss_pred ccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c------cCCCCeEEEEEC
Confidence 21111111111 0000000122344444445555555555444322111 1 112359999999
Q ss_pred CCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458 307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (389)
Q Consensus 307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (389)
|+|+++|.-..+|.+.+.+..-.+....+. ..-......|.|.-+..
T Consensus 226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~---~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFD---TDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCCCEEEEEECCCCEEEEECcccceeEEee---cCcCCCCcEEEEECCCc
Confidence 999999999999999999877666666664 22345667888876654
No 344
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.53 E-value=0.00068 Score=61.36 Aligned_cols=286 Identities=15% Similarity=0.136 Sum_probs=156.7
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC-cEE---EEEECC-----CCcEEEEecCCCcEEEEeCCCCCCCCCCCc
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-WVM---TCAFSP-----TGQSVACGGLDSVCSIFNLNSPTDKDGNLP 149 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~v~---~~~~~~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 149 (389)
+..|+.++.++.|.-.|..+|+.+-.+..... .+. ++.+.. .+..++.++.++.+.-.|..+++..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~----- 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVV----- 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEE-----
Confidence 45777788888999999999998877654221 111 111111 2356777888999999998876521
Q ss_pred ceeeecccc--cceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccCCC----------------
Q 016458 150 VSRMLSGHK--GYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGH---------------- 205 (389)
Q Consensus 150 ~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------- 205 (389)
.......+. ..+.+--..-++ .++.+. .+|.|..+|.++++.+..+........
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g--~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~ 221 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKG--KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK 221 (527)
T ss_pred eecccccccccccccCCcEEECC--EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccC
Confidence 011111111 011111111122 344443 268999999999998877643211100
Q ss_pred ----------CCCe-eEEEeeCCCCcEEEEeeCC-----C-----------ceEEEeCCCCCcceeEEee--ecc-----
Q 016458 206 ----------TADV-LSVSISGSNSRMFVSGSCD-----S-----------TARLWDTRVASRAVRTFHG--HEG----- 251 (389)
Q Consensus 206 ----------~~~v-~~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~--~~~----- 251 (389)
...+ ..+++.| ..++++.+..+ + .|.-.|++++ +..-.++. |..
T Consensus 222 tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG-~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 222 TWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG-KIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred CCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC-CEEEeeeCCCCCCccccC
Confidence 0011 1335555 44555554422 2 4556677766 33333332 211
Q ss_pred --ceEEEEEecCCC---EEEEEecCCeEEEEECCCCceeeEeec--------cCCCC-----------------CC----
Q 016458 252 --DVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQ--------QHGEN-----------------EI---- 297 (389)
Q Consensus 252 --~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~-----------------~~---- 297 (389)
...-+.+..+|+ .++.+..+|.+.+.|.++++.+..... ..... ..
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~ 379 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGV 379 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEE
Confidence 112222324665 788999999999999999987522100 00000 00
Q ss_pred -------CCeeEEEeCCCCCEEEEEecC---------------------------------CcEEEEEcccceEEEeecC
Q 016458 298 -------PHVTSIAFSISGRLLFAGYSN---------------------------------GDCYVWDTLLAKVVLNLGS 337 (389)
Q Consensus 298 -------~~i~~~~~~~~~~~l~~~~~d---------------------------------g~i~i~d~~~~~~~~~~~~ 337 (389)
..-..++++|+..++++...+ |.|.-+|+.+++.......
T Consensus 380 ~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~ 459 (527)
T TIGR03075 380 CPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKE 459 (527)
T ss_pred CCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecC
Confidence 001225667766655544332 4577888888888887642
Q ss_pred cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 338 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
......+. +. -.+.+++.++.||.++. +|.++|+..
T Consensus 460 ~~p~~~~~---l~--t~g~lvf~g~~~G~l~a----~D~~TGe~l 495 (527)
T TIGR03075 460 DFPLWGGV---LA--TAGDLVFYGTLEGYFKA----FDAKTGEEL 495 (527)
T ss_pred CCCCCCcc---eE--ECCcEEEEECCCCeEEE----EECCCCCEe
Confidence 11111111 12 24456777888999999 999999876
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.52 E-value=3.7e-05 Score=66.95 Aligned_cols=199 Identities=17% Similarity=0.200 Sum_probs=119.8
Q ss_pred CCeeEEEeeCCCcEEEEEECCCCcEEEEe---cCC-CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEE
Q 016458 99 SQKTHAIKLPCAWVMTCAFSPTGQSVACG---GLD-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 174 (389)
Q Consensus 99 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 174 (389)
+.....+......+..-+|+|++..++.. ... ..+.+++++.+... ....+.++. ..-+|+|+|..++
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-----~i~~~~g~~---~~P~fspDG~~l~ 253 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-----VILNFNGNN---GAPAFSPDGSKLA 253 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-----eeeccCCcc---CCccCCCCCCEEE
Confidence 44444455555667778899998876544 222 45889999886521 233334333 3458999998778
Q ss_pred EEeeCCCe--EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccc
Q 016458 175 ITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252 (389)
Q Consensus 175 ~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 252 (389)
++...||. |.++|+..+.... + ....+.-..-.|+|++..++++.+..|.-.||-..........+......
T Consensus 254 f~~~rdg~~~iy~~dl~~~~~~~-L-----t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~ 327 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDGKNLPR-L-----TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG 327 (425)
T ss_pred EEECCCCCccEEEEcCCCCccee-c-----ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC
Confidence 88887776 5566777766433 2 22223333667899555556666667765555444333444555444444
Q ss_pred eEEEEEecCCCEEEEEecC-Ce--EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458 253 VNTVKFFPDGNRFGTGSDD-GT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (389)
Q Consensus 253 i~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (389)
-..-.|+|||++|+..+.. |. |.+.|+.++.....+..... ...-.|.++|+.+...+.
T Consensus 328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~------~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL------NESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc------CCCCCcCCCCceEEEecc
Confidence 4477899999999887743 44 77777766654333322211 334567778876655443
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.52 E-value=0.00015 Score=61.63 Aligned_cols=221 Identities=13% Similarity=0.140 Sum_probs=128.8
Q ss_pred CcEEEEeCCCCCeeEEEeeCC-CcEEEEE---ECCC----CcEEEEecC---------C-CcEEEEeCCCCCCCCCCCcc
Q 016458 89 GRLIVWNALTSQKTHAIKLPC-AWVMTCA---FSPT----GQSVACGGL---------D-SVCSIFNLNSPTDKDGNLPV 150 (389)
Q Consensus 89 g~v~iw~~~~~~~~~~~~~~~-~~v~~~~---~~~~----~~~l~~~~~---------d-g~i~vw~~~~~~~~~~~~~~ 150 (389)
..|++.|..+.+.+..+.... +.+.+++ +..+ ..++++|+. . |.|.++++.........+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368899988888887776543 4455443 3332 567777743 2 88999999874111112222
Q ss_pred eeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (389)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (389)
... ....++|++++-.. +. +++ +.++.|.+|++.... ...... ......+.++... ++++++|....
T Consensus 82 i~~-~~~~g~V~ai~~~~--~~-lv~-~~g~~l~v~~l~~~~~l~~~~~----~~~~~~i~sl~~~---~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHS-TEVKGPVTAICSFN--GR-LVV-AVGNKLYVYDLDNSKTLLKKAF----YDSPFYITSLSVF---KNYILVGDAMK 149 (321)
T ss_dssp EEE-EEESS-EEEEEEET--TE-EEE-EETTEEEEEEEETTSSEEEEEE----E-BSSSEEEEEEE---TTEEEEEESSS
T ss_pred EEE-EeecCcceEhhhhC--CE-EEE-eecCEEEEEEccCcccchhhhe----ecceEEEEEEecc---ccEEEEEEccc
Confidence 222 23478899888773 33 433 334889999998887 433321 2233366677665 45889999888
Q ss_pred ceEEEeCCCCCcceeEEee--eccceEEEEEecCCCEEEEEecCCeEEEEECCC-------Cc-eeeEeeccCCCCCCCC
Q 016458 230 TARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-------GH-QLQVYYQQHGENEIPH 299 (389)
Q Consensus 230 ~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~-~~~~~~~~~~~~~~~~ 299 (389)
.+.++..+.....+..+.. ....++++.|-++++.++++..+|.+.++.... +. .+......+-. ..
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg---~~ 226 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG---DI 226 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S---S-
T ss_pred CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC---Cc
Confidence 8998865543233333332 234588888887767999999999999998763 11 22222221111 13
Q ss_pred eeEE---EeCC--CCC------EEEEEecCCcEEEE
Q 016458 300 VTSI---AFSI--SGR------LLFAGYSNGDCYVW 324 (389)
Q Consensus 300 i~~~---~~~~--~~~------~l~~~~~dg~i~i~ 324 (389)
|+++ .+.| .+. .++.++.+|.|.+.
T Consensus 227 v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 227 VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 6666 5555 222 47788899988844
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.50 E-value=0.00038 Score=60.99 Aligned_cols=225 Identities=12% Similarity=0.086 Sum_probs=116.4
Q ss_pred ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE-eCCC
Q 016458 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF-NLNS 140 (389)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw-~~~~ 140 (389)
.+-...-....+.++|+|+++++ +.||...|+.....+... . +.....+|.++++ +|+-..++.|.++ +++.
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~--~---G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA--F---GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE--E---EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE
T ss_pred cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc--c---CceeEEEEecCcc-EEEEECCCeEEEEEcCcc
Confidence 33344456889999999998888 567888888844333322 1 3345678988555 6666668889996 4432
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (389)
.. ...+.. ...+..+-. | .+|...+. +.|.+||+.+++.+..+ . . .+|..+.|++ ++.
T Consensus 100 ~~--------~k~i~~-~~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~~~i~~i-----~-v-~~vk~V~Ws~-~g~ 157 (443)
T PF04053_consen 100 EV--------VKSIKL-PFSVEKIFG---G-NLLGVKSS-DFICFYDWETGKLIRRI-----D-V-SAVKYVIWSD-DGE 157 (443)
T ss_dssp -T--------T------SS-EEEEE----S-SSEEEEET-TEEEEE-TTT--EEEEE-----S-S--E-EEEEE-T-TSS
T ss_pred cc--------ceEEcC-CcccceEEc---C-cEEEEECC-CCEEEEEhhHcceeeEE-----e-c-CCCcEEEEEC-CCC
Confidence 11 011111 112222222 4 55555544 48999999999999988 2 2 2389999998 777
Q ss_pred EEEEeeCCCceEEEeCCCC----------CcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458 221 MFVSGSCDSTARLWDTRVA----------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (389)
+++..+. ..+.+++.+.. ...+..+..-...|.+.+|..+ .++-.+.. .++. +..|... .+..
T Consensus 158 ~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~ 230 (443)
T PF04053_consen 158 LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAH 230 (443)
T ss_dssp EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE
T ss_pred EEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEE
Confidence 7777764 47888775421 0134444444678899999755 44444444 6665 3333322 2222
Q ss_pred cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
-.. ++.-+.+.+..+.++....|+.+..+.+.
T Consensus 231 ld~-----~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 231 LDK-----PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp -SS-------EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred cCC-----ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 111 25556666766778888888888877654
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.50 E-value=0.00022 Score=62.47 Aligned_cols=222 Identities=11% Similarity=0.060 Sum_probs=114.9
Q ss_pred CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (389)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 187 (389)
....+..+.++|+|+.++++ .+|...||.... .... ..+......|.+.+ .+++-..+..|.++.
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~---------~r~k---~~G~g~~~vw~~~n--~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA---------WRNK---AFGSGLSFVWSSRN--RYAVLESSSTIKIYK 95 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT---------TEEE---EEEE-SEEEE-TSS--EEEEE-TTS-EEEEE
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC---------Cccc---ccCceeEEEEecCc--cEEEEECCCeEEEEE
Confidence 34457899999999999985 577888887433 1222 13455667888854 577777788999963
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEE
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 267 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 267 (389)
--+......+ .....+..+-. +.+|...+. +.|.+||..+. +.+..+... +|..+.|++++.+++.
T Consensus 96 n~~~~~~k~i------~~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~-~~i~~i~v~--~vk~V~Ws~~g~~val 161 (443)
T PF04053_consen 96 NFKNEVVKSI------KLPFSVEKIFG----GNLLGVKSS-DFICFYDWETG-KLIRRIDVS--AVKYVIWSDDGELVAL 161 (443)
T ss_dssp TTEE-TT-----------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEE
T ss_pred cCccccceEE------cCCcccceEEc----CcEEEEECC-CCEEEEEhhHc-ceeeEEecC--CCcEEEEECCCCEEEE
Confidence 2222221222 11112333332 566666554 48999999987 777777633 3899999999999998
Q ss_pred EecCCeEEEEECCCC-----------ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeec
Q 016458 268 GSDDGTCRLFDIRTG-----------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 336 (389)
Q Consensus 268 ~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 336 (389)
.+.+ .+.+++.... ........... .|.+.+|..+ .++-.+.. .+.- +-.|+.. .+
T Consensus 162 ~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~-----~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i- 228 (443)
T PF04053_consen 162 VTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISE-----RIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-II- 228 (443)
T ss_dssp E-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S-------SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EE-
T ss_pred EeCC-eEEEEEecchhcccccccCchhceEEEEEecc-----eeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eE-
Confidence 8766 6777664432 01222221111 3888888765 33333343 5655 3333322 22
Q ss_pred CcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 337 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 337 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
..-+.++.=+.+.+....+.....|+.+.. +.+..
T Consensus 229 ---~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~----~~ld~ 263 (443)
T PF04053_consen 229 ---AHLDKPLYLLGYLPKENRLYLIDRDGNVIS----YELDL 263 (443)
T ss_dssp ---EE-SS--EEEEEETTTTEEEEE-TT--EEE----EE--H
T ss_pred ---EEcCCceEEEEEEccCCEEEEEECCCCEEE----EEECH
Confidence 112346666777776778888888888877 65543
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.46 E-value=0.00021 Score=61.58 Aligned_cols=242 Identities=18% Similarity=0.211 Sum_probs=131.2
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC-----------------CCcEEEEEECCCCcEEEEecC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-----------------CAWVMTCAFSPTGQSVACGGL 129 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~ 129 (389)
...+....|||+|+.+|... ++.|.+++..++...+..... -+.-..+.|||++++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 66799999999999998875 568999998777433222111 112356889999999887643
Q ss_pred C-CcEEEE-----------------------------------eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcE
Q 016458 130 D-SVCSIF-----------------------------------NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 173 (389)
Q Consensus 130 d-g~i~vw-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (389)
| ..|..+ ++.+++.. .+........-...+..+.|.+++..+
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~--~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT--ELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC--EE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE--EeeeccccCCCccCcccceecCCCcEE
Confidence 2 222222 22221100 000000012234567888999987323
Q ss_pred EEE-eeC---CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee-CCCCcEEEEeeCCCceEEEeCCCCCcceeEEee
Q 016458 174 LIT-SSG---DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG 248 (389)
Q Consensus 174 l~~-~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 248 (389)
++. ... ...+.++|..++......... ...--..-....+. +.+..++.....+|--+||-+.........+..
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~ 277 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS 277 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-
T ss_pred EEEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc
Confidence 332 222 235677788776554433211 11222233455554 656777777778886666555444344455555
Q ss_pred eccceEE-EEEecCCCEEE-EEecC----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458 249 HEGDVNT-VKFFPDGNRFG-TGSDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (389)
Q Consensus 249 ~~~~i~~-~~~~~~~~~l~-~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (389)
..-.|.. +.++++++.|+ ++..+ ..|...++..+..+..+...... -..+.|||+|++++....
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~-----~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD-----HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST-----TEEEEE-TTSSEEEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC-----ceEEEECCCCCEEEEEEc
Confidence 5556644 67788777654 44442 24666666623444444443332 158999999998876544
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=1.2e-05 Score=72.56 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=83.1
Q ss_pred EEEEEECCCCcEEEEecC----CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458 112 VMTCAFSPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (389)
Q Consensus 112 v~~~~~~~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 187 (389)
-+-..|+|...++++++. .|.|.||--..... ...... -.+++++|+|.. -.|+.|-.-|.+.+|.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPq------r~Vt~P---~hatSLCWHpe~-~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQ------RDVTYP---VHATSLCWHPEE-FVLAQGWEMGVSDVQK 87 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecCCCCC------cccccc---eehhhhccChHH-HHHhhccccceeEEEe
Confidence 344679999999888754 57888885433111 111112 235669999975 6777888889999999
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 237 (389)
..+.+..... ..|..+|..+.|++ ++..++++..-|.+.+|...
T Consensus 88 ~~~~e~htv~-----~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETHTVV-----ETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCceeeeec-----cCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 8887766665 68999999999999 88999999999999999765
No 351
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=0.00041 Score=57.63 Aligned_cols=224 Identities=15% Similarity=0.133 Sum_probs=125.8
Q ss_pred EECCCCcE-EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE
Q 016458 116 AFSPTGQS-VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194 (389)
Q Consensus 116 ~~~~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 194 (389)
.|.++... +.+--..+.|.-|+..++. ...+. +.+.+.++.....+ ..|+++... +.+++.+++...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~--------~~~~~-~p~~~~~~~~~d~~-g~Lv~~~~g--~~~~~~~~~~~~ 98 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK--------KRVFP-SPGGFSSGALIDAG-GRLIACEHG--VRLLDPDTGGKI 98 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc--------eEEEE-CCCCcccceeecCC-CeEEEEccc--cEEEeccCCcee
Confidence 46666664 4444557778888876532 22222 23334444444443 344444332 556666655553
Q ss_pred EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-----------CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCC
Q 016458 195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 263 (389)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 263 (389)
..+............+.+.+.| ++.+.++... -|.|+-+|. . ....+.+..+-..-+.++||||++
T Consensus 99 t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 99 TLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred EEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEeecCcEEecCceEECCCCC
Confidence 3332221122334566777787 5655554333 133444443 2 245555555555668899999998
Q ss_pred EEEEEec-CCeEEEEECCC--Cceee---EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-cEEEEEcccceEEEeec
Q 016458 264 RFGTGSD-DGTCRLFDIRT--GHQLQ---VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLG 336 (389)
Q Consensus 264 ~l~~~~~-dg~i~i~d~~~--~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~ 336 (389)
.|+.+.. .+.|.-|++.. +..-. .... .......-.++...+|.+.+++..+| .|.+|+.. ++.+..+
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~---~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i- 250 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDF---DEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI- 250 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCCcceEEEc---cCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE-
Confidence 8877765 47888887762 11111 1111 11112345677888888776555554 89999988 8888887
Q ss_pred CcCCCCCCCeeEEEEC-CCCCeEEeee
Q 016458 337 SLQNSHEGRITCLGLS-ADGSALCTGS 362 (389)
Q Consensus 337 ~~~~~~~~~v~~~~~~-~~~~~l~~~~ 362 (389)
......+++++|- ++.+.|...+
T Consensus 251 ---~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 251 ---KLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ---ECCCCCCccceEeCCCcCEEEEEe
Confidence 3444678888885 4445554443
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.43 E-value=3.8e-05 Score=66.86 Aligned_cols=189 Identities=16% Similarity=0.157 Sum_probs=112.3
Q ss_pred ecccccceEEEEEeeCCCcEEEEeeCC---CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCc
Q 016458 154 LSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230 (389)
Q Consensus 154 ~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (389)
+......+..-.|+|++..+.+..-.. ..+.++|+.++...... .....-..-.|+|+...++++...||.
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccCCccCCccCCCCCCEEEEEECCCCC
Confidence 333445566678888886544443222 45999999998777665 234445566899966667777777776
Q ss_pred eEE--EeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CCe--EEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458 231 ARL--WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (389)
Q Consensus 231 i~i--~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (389)
..| +|+... ....+....+.-..-.|+|||++++..+. .|. |.+++...... ..+...... -..-.|
T Consensus 262 ~~iy~~dl~~~--~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-----~~~p~~ 333 (425)
T COG0823 262 PDIYLMDLDGK--NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-----NSNPVW 333 (425)
T ss_pred ccEEEEcCCCC--cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-----CcCccC
Confidence 554 566544 34444433333346789999999887664 443 66677665544 333222222 125679
Q ss_pred CCCCCEEEEEec-CCc--EEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458 306 SISGRLLFAGYS-NGD--CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (389)
Q Consensus 306 ~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 361 (389)
+|||++++..+. +|. |.+.|+.++.....+ .+......-.|.++|..+...
T Consensus 334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-----t~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 334 SPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-----TSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-----cccccCCCCCcCCCCceEEEe
Confidence 999998887764 344 666776665533333 222223344455665554443
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.43 E-value=0.00034 Score=59.48 Aligned_cols=186 Identities=12% Similarity=0.157 Sum_probs=107.2
Q ss_pred CcEEEEeeC----------CCeEEEEeCCCC----eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeC
Q 016458 171 DTHLITSSG----------DQTCVLWDITTG----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (389)
Q Consensus 171 ~~~l~~~~~----------dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 236 (389)
..+++.|+. .|.|.++++... ..+.... .....++|++++-. ++. |+++ .++.|.+|++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~--~~~-lv~~-~g~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSF--NGR-LVVA-VGNKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEE--TTE-EEEE-ETTEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhh--CCE-EEEe-ecCEEEEEEc
Confidence 366776653 299999999984 1222211 13457789999887 444 4333 3589999999
Q ss_pred CCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC-CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE
Q 016458 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315 (389)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (389)
.... .+.....+..++...+....++++++|..-..+.++..+. ...+..+.... ....++++.|-++++.++++
T Consensus 115 ~~~~-~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~---~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 115 DNSK-TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDY---QPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp ETTS-SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEES---S-BEEEEEEEE-SSSEEEEE
T ss_pred cCcc-cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecC---CCccEEEEEEecCCcEEEEE
Confidence 8773 2333333434334444444467999999888888875544 22233333222 12348888888666799999
Q ss_pred ecCCcEEEEEccc-------ce-EEEeecCcCCCCCCCeeEE---EECCC--CC------eEEeeeCCCeeEE
Q 016458 316 YSNGDCYVWDTLL-------AK-VVLNLGSLQNSHEGRITCL---GLSAD--GS------ALCTGSWDTNLKV 369 (389)
Q Consensus 316 ~~dg~i~i~d~~~-------~~-~~~~~~~~~~~~~~~v~~~---~~~~~--~~------~l~~~~~dg~i~i 369 (389)
+.+|.+.++.... +. .+..... -.....|+++ ++.|. +. .++.++.+|.|.+
T Consensus 191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~--f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 191 DKDGNLFVLRYNPEIPNSRDGDPKLERISS--FHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp ETTSEEEEEEE-SS-SSTTTTTTBEEEEEE--EE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred cCCCeEEEEEECCCCcccccccccceeEEE--EECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 9999999998762 11 1111110 1234567777 55552 22 3888889999875
No 354
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.42 E-value=5.4e-05 Score=65.23 Aligned_cols=208 Identities=10% Similarity=0.098 Sum_probs=113.9
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee--------CCCcEEEEEECC-----CC-
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL--------PCAWVMTCAFSP-----TG- 121 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~--------~~~~v~~~~~~~-----~~- 121 (389)
.+.+...+....++|++++.|.=| ++|.|..+|.+.|.|++....+..-.. ....++++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 466777777889999999998555 999999999999999987777665332 124578888852 33
Q ss_pred --cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe-eCC-------------------CcEEEEeeC
Q 016458 122 --QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-PDE-------------------DTHLITSSG 179 (389)
Q Consensus 122 --~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-------------------~~~l~~~~~ 179 (389)
-.+++|+..|.+.+|.+..................+.++|..+... .+. -.-++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 5688999999999998853111111111222223455666665533 211 012444555
Q ss_pred CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee----CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee----cc
Q 016458 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS----GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EG 251 (389)
Q Consensus 180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~ 251 (389)
+..++++...+.+..... .........+.+- ...+..|++-..+|.+++|.+... +.+...... ..
T Consensus 234 e~~irv~~~~~~k~~~K~-----~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKS-----FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSR 307 (395)
T ss_dssp SSEEEEE-TT---EEEEE------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HH
T ss_pred ccceEEEeCCCCccccee-----eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccc
Confidence 778999999888776655 2121222333342 125667888889999999999876 444444432 12
Q ss_pred ceEEEEEecCCCEEEEEec
Q 016458 252 DVNTVKFFPDGNRFGTGSD 270 (389)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~ 270 (389)
.+...+++++|+.++-.+.
T Consensus 308 ~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SS
T ss_pred cccccEECCCCCEEEEeCc
Confidence 3445666777776655543
No 355
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.41 E-value=0.0011 Score=58.04 Aligned_cols=71 Identities=24% Similarity=0.257 Sum_probs=60.5
Q ss_pred CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
.+.+++++|+...++.|+.||.|.+||...+..... ...-.++.++|+|+|..+++|+..|.+.+ ||+.-
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~----FD~AL 330 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQC----FDMAL 330 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEE----EEeec
Confidence 589999999999999999999999999876643322 23346789999999999999999999999 99865
Q ss_pred C
Q 016458 379 G 379 (389)
Q Consensus 379 ~ 379 (389)
+
T Consensus 331 s 331 (545)
T PF11768_consen 331 S 331 (545)
T ss_pred C
Confidence 4
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.38 E-value=1.7e-05 Score=73.11 Aligned_cols=143 Identities=16% Similarity=0.234 Sum_probs=96.1
Q ss_pred cEEEE-eeCCCeEEEEeCCCCeeEEEecCcccCCCC-CCeeEEEeeC----CCCcEEEEeeCCCceEEEeCCCCCcceeE
Q 016458 172 THLIT-SSGDQTCVLWDITTGLRTSVFGGEFQSGHT-ADVLSVSISG----SNSRMFVSGSCDSTARLWDTRVASRAVRT 245 (389)
Q Consensus 172 ~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 245 (389)
++++. ......|+-.|++.|+.+..+. .+. .+|..++-.. ..+.-.+.|-.+..+..||.|..+..+..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~-----~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWK-----VHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEee-----cCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 34333 3456889999999999999984 333 2355554321 12334567788899999999976422221
Q ss_pred Ee----eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcE
Q 016458 246 FH----GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC 321 (389)
Q Consensus 246 ~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (389)
-. .......|++-+.+| +||+|+.+|.|++|| +.+....+.... -..+|..+..+.||++|++.+.. .+
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~----lG~pI~~iDvt~DGkwilaTc~t-yL 641 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPG----LGDPIIGIDVTADGKWILATCKT-YL 641 (794)
T ss_pred ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCC----CCCCeeEEEecCCCcEEEEeecc-eE
Confidence 11 234467788877666 699999999999999 444443333322 23479999999999999887655 67
Q ss_pred EEEEc
Q 016458 322 YVWDT 326 (389)
Q Consensus 322 ~i~d~ 326 (389)
.+++.
T Consensus 642 lLi~t 646 (794)
T PF08553_consen 642 LLIDT 646 (794)
T ss_pred EEEEE
Confidence 77764
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.0014 Score=57.09 Aligned_cols=265 Identities=18% Similarity=0.196 Sum_probs=163.3
Q ss_pred cEEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCC
Q 016458 69 KVYSLDWTSERNRIVSAS-QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDG 146 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~ 146 (389)
....+...+++..+.... ....+...+...................++.++.+..++ +...++.|.+.|.....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---- 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---- 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc----
Confidence 455677888885444333 222455555442211111222213456778888887554 44556899999966533
Q ss_pred CCcceeeecccccceEEEEEeeCCCcEEEEee--CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE
Q 016458 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (389)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 224 (389)
....... ......+++.+++....++-. .++.+.+.|..++....... .-..+ ..+++.|.....+++
T Consensus 108 ---~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-----vG~~P-~~~a~~p~g~~vyv~ 177 (381)
T COG3391 108 ---VLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-----VGNTP-TGVAVDPDGNKVYVT 177 (381)
T ss_pred ---eeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-----cCCCc-ceEEECCCCCeEEEE
Confidence 2222111 125677899999865555555 37999999999988888752 22233 889999944445666
Q ss_pred eeCCCceEEEeCCCCCccee-E---EeeeccceEEEEEecCCCEEEEEecC---CeEEEEECCCCceeeEeeccCCCCCC
Q 016458 225 GSCDSTARLWDTRVASRAVR-T---FHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEI 297 (389)
Q Consensus 225 ~~~dg~i~i~d~~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (389)
-..++.|.+.|.... .... . ...-......+.++|++.++.+.... +.+...|..++........... .
T Consensus 178 ~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~---~ 253 (381)
T COG3391 178 NSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS---G 253 (381)
T ss_pred ecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc---C
Confidence 668899999997654 2221 0 01122334678999999977666544 5899999988776655222111 1
Q ss_pred CCeeEEEeCCCCCEEEEEecC-CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458 298 PHVTSIAFSISGRLLFAGYSN-GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
....+.++|+|.++++.... +.+.+.|..+............. ...+..+++.+
T Consensus 254 -~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~-~~~~~~~~~~~ 308 (381)
T COG3391 254 -APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEA-LGEPVSIAISP 308 (381)
T ss_pred -CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccc-cccceecccee
Confidence 24678899999998888544 88999999888877766432221 12344555544
No 358
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.35 E-value=5.2e-06 Score=73.08 Aligned_cols=147 Identities=15% Similarity=0.186 Sum_probs=100.8
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 288 (389)
+.--+++. ...+++.|+.-|.+++|+-..+........+..+.+..+..+++..++|.|+..|.|.++-+....+....
T Consensus 36 v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 36 VKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred EEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 33333443 77899999999999999977653333333334556777888999999999999999999998775443332
Q ss_pred ec-cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce----EEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458 289 YQ-QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK----VVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (389)
Q Consensus 289 ~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 361 (389)
.. +....+...|++++|++++..+++|...|.|..-.+.... ....+ ....+.|..+... ++.+|++.
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i----l~~ds~IVQlD~~-q~~LLVSt 187 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI----LSEDSEIVQLDYL-QSYLLVST 187 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcccccee----eccCcceEEeecc-cceehHhh
Confidence 22 2222355679999999999999999999999988887621 11111 2345677777765 34444443
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.33 E-value=0.0011 Score=55.11 Aligned_cols=236 Identities=13% Similarity=0.177 Sum_probs=130.2
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (389)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 198 (389)
..++.|+.|+.+| +.+++..... ...... +...|..+...++-+ .+++- .|+.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~------~~~~i~--~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS------KPTRIL--KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc------cceeEe--ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhccccccc
Confidence 4678899999888 8999983221 011221 223399999999763 33333 35999999987654443210
Q ss_pred C---------cccCCCCCCeeEEE-eeCCCCcEEEEeeCCCceEEEeCCCCC----cceeEEeeeccceEEEEEecCCCE
Q 016458 199 G---------EFQSGHTADVLSVS-ISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHGHEGDVNTVKFFPDGNR 264 (389)
Q Consensus 199 ~---------~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~ 264 (389)
. .........+...+ .....+...++......|.+|...... ...+.+. -...+..++|. ++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNK 150 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCE
Confidence 0 00012233455554 112233333444445689988877531 2333333 34678899998 557
Q ss_pred EEEEecCCeEEEEECCCCceeeEeeccCCC-------CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (389)
Q Consensus 265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (389)
++.|..+ ...+.|+.++.....+...... ....++..+..+ ++.+|++- |..-.+.|. .|++.....
T Consensus 151 i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~- 224 (275)
T PF00780_consen 151 ICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKST- 224 (275)
T ss_pred EEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccE-
Confidence 7777755 5788999976655444222111 112234444443 45566543 333334443 443332110
Q ss_pred cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 338 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
-.-...+.++++. ..||++.+. +.|-| |++.+|++..
T Consensus 225 --i~W~~~p~~~~~~--~pyli~~~~-~~iEV----~~~~~~~lvQ 261 (275)
T PF00780_consen 225 --IQWSSAPQSVAYS--SPYLIAFSS-NSIEV----RSLETGELVQ 261 (275)
T ss_pred --EEcCCchhEEEEE--CCEEEEECC-CEEEE----EECcCCcEEE
Confidence 1123355666664 347777665 45999 9999998754
No 360
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.32 E-value=0.002 Score=57.09 Aligned_cols=246 Identities=14% Similarity=0.129 Sum_probs=130.2
Q ss_pred EEEEEEcCCCCeEEEE-ecCC----cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC-----------cE
Q 016458 70 VYSLDWTSERNRIVSA-SQDG----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-----------VC 133 (389)
Q Consensus 70 v~~~~~~~~~~~l~~~-~~dg----~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i 133 (389)
+....++|++++||.+ +..| .++++|+.+++.+...-.. .....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999988854 3333 5999999999766532111 1123499999988876654332 37
Q ss_pred EEEeCCCCCCCCCCCcceeeecccccc--eEEEEEeeCCCcEEEEeeCC---CeEEEEeCCCC-----eeEEEecCcccC
Q 016458 134 SIFNLNSPTDKDGNLPVSRMLSGHKGY--VSCCQYVPDEDTHLITSSGD---QTCVLWDITTG-----LRTSVFGGEFQS 203 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~-----~~~~~~~~~~~~ 203 (389)
+.|.+.++... -...+...... ...+..++++..+++..... ..+.+.|+..+ ...... .
T Consensus 205 ~~~~~gt~~~~-----d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-----~ 274 (414)
T PF02897_consen 205 YRHKLGTPQSE-----DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-----P 274 (414)
T ss_dssp EEEETTS-GGG------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-----E
T ss_pred EEEECCCChHh-----CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-----C
Confidence 77887764321 12233332222 56788888875444444333 45888888874 222222 2
Q ss_pred CCCCCeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCc--ceeEEeeeccceEEEEEecCCCEEEEE-ecCC--eEE
Q 016458 204 GHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDG--TCR 275 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~ 275 (389)
...+....+... ++.+++... ..+.|.-.++..... ....+..+...+.-..+...+++|+.. ..++ .|+
T Consensus 275 ~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 275 REDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEE
Confidence 222333334333 444444433 245777778876632 122555555543333333445555544 4444 588
Q ss_pred EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec----CCcEEEEEcccceEE
Q 016458 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS----NGDCYVWDTLLAKVV 332 (389)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~ 332 (389)
++++..+........... ..+..+...++++.+..... -+.++.||+.+++..
T Consensus 353 v~~~~~~~~~~~~~~p~~----g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEA----GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEETT-TEEEEEEESSSS----SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEECCCCcEEeeecCCcc----eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 999883334433333221 12566665666664433222 357888888877654
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.29 E-value=0.0015 Score=54.35 Aligned_cols=231 Identities=14% Similarity=0.116 Sum_probs=128.8
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcce--e--
Q 016458 77 SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS--R-- 152 (389)
Q Consensus 77 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--~-- 152 (389)
..++.|+.|+.+| +.+++.........+.. ...|..+...++-+.|++-+ |+.+.++++..-.......... .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~-~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK-LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee-cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3567999999998 99999833332222222 22399999999877776664 5999999998744221110000 0
Q ss_pred ---eecccccceEEEE--EeeCCCcEEEEeeCCCeEEEEeCCCC-----eeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458 153 ---MLSGHKGYVSCCQ--YVPDEDTHLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (389)
Q Consensus 153 ---~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (389)
........+...+ -...+ ...+.......|.+|..... .....+ .....+.+++|.+ +.+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~------~lp~~~~~i~~~~---~~i 151 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLLKEI------SLPDPPSSIAFLG---NKI 151 (275)
T ss_pred cccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCcccccceeEEE------EcCCCcEEEEEeC---CEE
Confidence 0111122333333 11223 33444444558888887653 233333 3457889999983 556
Q ss_pred EEeeCCCceEEEeCCCCCcceeEEeee------------ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee--Ee
Q 016458 223 VSGSCDSTARLWDTRVASRAVRTFHGH------------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VY 288 (389)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~ 288 (389)
+.|.. ....+.|+.+. .....+... ..++..+... ++.+|++- |..-.+.|. .|+... .+
T Consensus 152 ~v~~~-~~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i 225 (275)
T PF00780_consen 152 CVGTS-KGFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTI 225 (275)
T ss_pred EEEeC-CceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEE
Confidence 66664 45888898855 222222111 1233333333 45555543 333334443 344333 22
Q ss_pred eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
.... ...++++ ...||++.+.+ .|.||++.+++.+..+
T Consensus 226 ~W~~------~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 226 QWSS------APQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTI 263 (275)
T ss_pred EcCC------chhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEE
Confidence 2211 2456666 34588777665 5999999999998887
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1e-05 Score=70.36 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=77.7
Q ss_pred cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCee-EEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT-SIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (389)
..+..+.|+|.-.++|.+..+|.|.+..+. .+.+..+..+... ++ +++|.|||+.|++|-.||+|++.|..++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~-----v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN-----VTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCc-----cceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 357789999999999999999999999988 7777777644333 45 9999999999999999999999999998
Q ss_pred eEEEeecCcCCCCCCCeeEEEECC
Q 016458 330 KVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
..+.... ......|+++.|++
T Consensus 95 ~~l~~~~---~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSFL---FSVETDISKGIWDR 115 (665)
T ss_pred Cceeccc---cccccchheeeccc
Confidence 8887642 34556788888863
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.21 E-value=6.9e-05 Score=69.26 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=95.2
Q ss_pred CCcEEEEe-eCCCceEEEeCCCCCcceeEEeeeccc-eEEEEEec-----CCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458 218 NSRMFVSG-SCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFP-----DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (389)
Q Consensus 218 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (389)
+.++|+.. .....|+-.|+..+ +.+..+..|... |..++-.. ...-.+.|-.+..+..||.|-.........
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 44554443 35678999999988 888888877654 55443221 123456677888999999986432111111
Q ss_pred cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 368 (389)
.+.-......+|++-+.+| +||+|+.+|.|++||- .+..-++. ..+...+|.+|..+.||++|++.+..-.+.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~---lp~lG~pI~~iDvt~DGkwilaTc~tyLlL 643 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTA---LPGLGDPIIGIDVTADGKWILATCKTYLLL 643 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhc---CCCCCCCeeEEEecCCCcEEEEeecceEEE
Confidence 1111222347777777666 7899999999999994 33332222 256778999999999999988777554443
No 364
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.17 E-value=0.00024 Score=48.08 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=68.5
Q ss_pred EEEEEEcC---CC-CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458 70 VYSLDWTS---ER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (389)
Q Consensus 70 v~~~~~~~---~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (389)
|++|++.. +| +.|++|+.|..|++|+- .+.+..+... +.|++++-... ..++.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R---- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQR---- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcce----
Confidence 56666654 33 58999999999999983 3566666655 45777776655 66888999999999986542
Q ss_pred CCCcceeeecccccceEEEEEee---CCCcEEEEeeCCCeEE
Q 016458 146 GNLPVSRMLSGHKGYVSCCQYVP---DEDTHLITSSGDQTCV 184 (389)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~ 184 (389)
.-..+. +..+.++.+.. +|...|++|-.+|.|-
T Consensus 74 -----lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -----LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -----eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 122222 22355555543 3445799999999874
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=3.5e-06 Score=64.00 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=87.7
Q ss_pred EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (389)
.+...+.+|.|+-++++......+.-.-+.....-+. -+..+++|+.+|.|.+|................. .|
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e----~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE----SI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccc----cc
Confidence 3445567888888888755333333222332211122 3456999999999999987732221111111111 12
Q ss_pred -eEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCC-CCeeEEEECCCCCeEEee--eCCCeeEEeecceec
Q 016458 301 -TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTG--SWDTNLKVNLGFWRV 376 (389)
Q Consensus 301 -~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~i~~~~W~~ 376 (389)
+.+.--.++.+..++..+|.|+.|++...+.+... ..|. .++..+..+..+++++.+ |.|..++. |++
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~----g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~----W~v 176 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV----GQHNFESGEELIVVGSDEFLKIADTSHDRVLKK----WNV 176 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeee----ccccCCCcceeEEecCCceEEeeccccchhhhh----cch
Confidence 22222335568899999999999999988888777 5666 556666666666667666 67777776 777
Q ss_pred cc
Q 016458 377 QE 378 (389)
Q Consensus 377 ~~ 378 (389)
..
T Consensus 177 e~ 178 (238)
T KOG2444|consen 177 EK 178 (238)
T ss_pred hh
Confidence 54
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.16 E-value=6.9e-06 Score=44.68 Aligned_cols=38 Identities=34% Similarity=0.676 Sum_probs=34.4
Q ss_pred eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEe
Q 016458 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~ 95 (389)
.+...+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667788999999999999999999999999999996
No 367
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.12 E-value=0.0078 Score=56.16 Aligned_cols=290 Identities=13% Similarity=0.097 Sum_probs=154.8
Q ss_pred cCcEEEEEEcCCC------CeEEEEecCCcEEEEe-CCCCCeeEEEeeC----CCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458 67 AGKVYSLDWTSER------NRIVSASQDGRLIVWN-ALTSQKTHAIKLP----CAWVMTCAFSPTGQSVACGGLDSVCSI 135 (389)
Q Consensus 67 ~~~v~~~~~~~~~------~~l~~~~~dg~v~iw~-~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (389)
...|.|++++|-| ++++.|..+..+.+-- ..+...+...... ...|.-..+-.+..+|.++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4579999999842 2788888876665543 2333333222111 134556666667899999999999988
Q ss_pred EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE-Ee
Q 016458 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV-SI 214 (389)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~ 214 (389)
|.++..... ....+...--..++.--.|+..+.+.+++ ..|+-..+|..+..-....+. -..+..+ .|
T Consensus 610 fv~d~~tg~---lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa-~sdrP~viY~~n~kLv~spls-------~kev~~~c~f 678 (1096)
T KOG1897|consen 610 FVLDINTGQ---LSDRKKVTLGTQPISLRTFSSKSRTAVFA-LSDRPTVIYSSNGKLVYSPLS-------LKEVNHMCPF 678 (1096)
T ss_pred EEEEcccce---EccccccccCCCCcEEEEEeeCCceEEEE-eCCCCEEEEecCCcEEEeccc-------hHHhhhhccc
Confidence 877653311 11111111223455555676666444444 445555566544333222221 0111111 11
Q ss_pred e-CCCCcEEEEeeCCCceEEEeCCCCCcc-eeEEeeeccceEEEEEecCCCEEEEEecC--------------CeEEEEE
Q 016458 215 S-GSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDD--------------GTCRLFD 278 (389)
Q Consensus 215 ~-~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d 278 (389)
+ +..+..++.+. .+.+.+.-++.-++. .++ -+-......+++.+....+.+.+.- ..++++|
T Consensus 679 ~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irt-vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD 756 (1096)
T KOG1897|consen 679 NSDAYPDSLASAN-GGALTIGTIDEIQKLHIRT-VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD 756 (1096)
T ss_pred ccccCCceEEEec-CCceEEEEecchhhcceee-ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEec
Confidence 1 11233444443 456777766543222 233 2334456778887744444444321 1366777
Q ss_pred CCCCceeeEeeccCCCCCCCCeeEEEeCCC-CCEEEEEec----------CCcEEEEEcccceEEEeecCcCCCCCCCee
Q 016458 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 347 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 347 (389)
-++.+.+........+ ....+.++.|..| +.++++|+. .|.|.+|.+..+..+..... ..-.+.+.
T Consensus 757 ~nTf~vl~~hef~~~E-~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e--~~v~Gav~ 833 (1096)
T KOG1897|consen 757 QNTFEVLSSHEFERNE-TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE--TVVKGAVY 833 (1096)
T ss_pred CCceeEEeeccccccc-eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee--eeecccee
Confidence 6665544433322211 1223555668877 678888863 58899998877444443311 22344555
Q ss_pred EEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 348 CLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 348 ~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
++..- +|++||.- ...|++ ++..++
T Consensus 834 aL~~f-ngkllA~I--n~~vrL----ye~t~~ 858 (1096)
T KOG1897|consen 834 ALVEF-NGKLLAGI--NQSVRL----YEWTTE 858 (1096)
T ss_pred ehhhh-CCeEEEec--CcEEEE----EEcccc
Confidence 55432 57766644 568898 888777
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00043 Score=59.57 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=94.3
Q ss_pred EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCE-------EEEEecCCeEEEEECCCCce-eeEeeccC
Q 016458 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR-------FGTGSDDGTCRLFDIRTGHQ-LQVYYQQH 292 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~~~~~dg~i~i~d~~~~~~-~~~~~~~~ 292 (389)
+|..+.....++-.|+..+ +.+..+.-+.. |+-+.+.|+.+. -+.|-.|..|.-||.+-... .......+
T Consensus 348 il~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4455666678888899988 88888886665 777788775432 34566788999999884332 12222222
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.-.......|.+-..+| ++++|+.+|.|++||- .+..-.+.. .+...+|..+..+.||++|+..+..-.+.+
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAl---PgLG~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTAL---PGLGDAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcc---cccCCceeeEEeeccCcEEEEecccEEEEE
Confidence 11112224555554444 8999999999999997 444433332 678889999999999998877665444433
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.2e-05 Score=68.38 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=76.5
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEE-EEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVM-TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (389)
-.|.-+.|+|.-.++|++..+|.|.+..+. .+.+.+++.+...++ +++|.|||+.|++|-.||+|++.|...+...
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l-- 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL-- 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce--
Confidence 357889999999999999999999999987 888899998888888 9999999999999999999999999986521
Q ss_pred CCcceeeecccccceEEEEEee
Q 016458 147 NLPVSRMLSGHKGYVSCCQYVP 168 (389)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~ 168 (389)
..........|.++-|.+
T Consensus 98 ----~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 ----VSFLFSVETDISKGIWDR 115 (665)
T ss_pred ----eccccccccchheeeccc
Confidence 111223345666666653
No 370
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.02 E-value=0.0023 Score=55.29 Aligned_cols=80 Identities=23% Similarity=0.209 Sum_probs=54.9
Q ss_pred CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC--------------CC-eEEeeeC
Q 016458 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD--------------GS-ALCTGSW 363 (389)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~-~l~~~~~ 363 (389)
.+.+++.+|++++.++...=|+|.++|+.++..+..++.+..+.-+-+....-... .. +++-+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 37889999999999998888999999999998888886443333222222211111 11 2344566
Q ss_pred CCeeEEeecceecccCccc
Q 016458 364 DTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 364 dg~i~i~~~~W~~~~~~~~ 382 (389)
-|.|-| |.+..|.-+
T Consensus 389 Rg~lEv----W~~~~g~Rv 403 (415)
T PF14655_consen 389 RGILEV----WSMRQGPRV 403 (415)
T ss_pred CCeEEE----EecCCCCEE
Confidence 889999 999988543
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.00 E-value=0.0096 Score=52.83 Aligned_cols=249 Identities=15% Similarity=0.130 Sum_probs=131.2
Q ss_pred EEEEEECCCCcEEEEe-cCC----CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC------
Q 016458 112 VMTCAFSPTGQSVACG-GLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------ 180 (389)
Q Consensus 112 v~~~~~~~~~~~l~~~-~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------ 180 (389)
+....++|+++++|.+ +.. ..++++|+.+++. +...+.. .....+.|.+++..++++...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~------l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF------LPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE------EEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC------cCCcccc--cccceEEEeCCCCEEEEEEeCccccccc
Confidence 4467899999998865 233 3599999988541 1112121 1223389999986655655333
Q ss_pred ----CeEEEEeCCCCeeE--EEecCcccCCCCCC-eeEEEeeCCCCcEEEE-eeCC---CceEEEeCCCC---CcceeEE
Q 016458 181 ----QTCVLWDITTGLRT--SVFGGEFQSGHTAD-VLSVSISGSNSRMFVS-GSCD---STARLWDTRVA---SRAVRTF 246 (389)
Q Consensus 181 ----g~i~iwd~~~~~~~--~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~-~~~d---g~i~i~d~~~~---~~~~~~~ 246 (389)
..|+.|.+.+.... ..+. ...... ...+..++ ++++++. .... ..+.+.|+... ......+
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe----~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFE----EPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-----TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred CCCCcEEEEEECCCChHhCeeEEe----ecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 34788888776433 3331 122222 56788887 5566554 3332 34788888763 2344445
Q ss_pred eeeccceEEEEEecCCCEEEEEe---cCCeEEEEECCCCce---eeEeeccCCCCCCCCeeEEEeCCCCCEEEEE-ecCC
Q 016458 247 HGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNG 319 (389)
Q Consensus 247 ~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg 319 (389)
......+....-+..+.+++... .++.|...++..... ...+...... ..+..+.. .+.+|+.. ..++
T Consensus 273 ~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~---~~l~~~~~--~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 273 SPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED---VSLEDVSL--FKDYLVLSYRENG 347 (414)
T ss_dssp EESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS---EEEEEEEE--ETTEEEEEEEETT
T ss_pred eCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc---eeEEEEEE--ECCEEEEEEEECC
Confidence 44444444333333444444332 346787888877653 2122222111 12444444 44455544 4444
Q ss_pred --cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe-eeC---CCeeEEeecceecccCcccCcc
Q 016458 320 --DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT-GSW---DTNLKVNLGFWRVQEGALSPWG 385 (389)
Q Consensus 320 --~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~---dg~i~i~~~~W~~~~~~~~~~~ 385 (389)
.|+++++..+.....+. ..-.+.|..+...+++..+.. .++ -+++.. +|+.++++..|.
T Consensus 348 ~~~l~v~~~~~~~~~~~~~---~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~----~d~~t~~~~~~k 412 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIP---LPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYR----YDLATGELTLLK 412 (414)
T ss_dssp EEEEEEEETT-TEEEEEEE---SSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEE----EETTTTCEEEEE
T ss_pred ccEEEEEECCCCcEEeeec---CCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEE----EECCCCCEEEEE
Confidence 68899998344444443 233445666666665544322 221 256676 999999887663
No 372
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.97 E-value=0.0045 Score=47.80 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=83.7
Q ss_pred CCCeeEEEeeCCCCcEEEEeeC---------CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEE-EecCCeEE
Q 016458 206 TADVLSVSISGSNSRMFVSGSC---------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT-GSDDGTCR 275 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~ 275 (389)
....+.-..+| ++++++-.-. .|.++.|-.. ..+..+...-.--+.++|+.+.+.+.. -+.+-.|.
T Consensus 108 knR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~---h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG---HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCC-CCceeeeeeccccccccccccEEEEeccC---CCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 34556666777 7777432222 2344444433 122222222233467889887776654 45566777
Q ss_pred EEE--CCCCc-----eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeE
Q 016458 276 LFD--IRTGH-----QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (389)
Q Consensus 276 i~d--~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (389)
-|| ..++. .+..+...... .....-.+++..+|++.++.-..|+|...|..+|+.+.++ .-....|++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~-e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei----klPt~qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPF-ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEI----KLPTPQITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCc-CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEE----EcCCCceEE
Confidence 777 44443 22222221111 1111345666778998888888999999999999999999 455788999
Q ss_pred EEECC
Q 016458 349 LGLSA 353 (389)
Q Consensus 349 ~~~~~ 353 (389)
++|--
T Consensus 259 ccFgG 263 (310)
T KOG4499|consen 259 CCFGG 263 (310)
T ss_pred EEecC
Confidence 99964
No 373
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.92 E-value=0.01 Score=50.32 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=109.4
Q ss_pred eCCCCCeeEEEeeCCCcEEEE-----EECCCCcEEEEec-CCC--cEEEEeCCCCCCCCCCCcceeeecccc-cceEEEE
Q 016458 95 NALTSQKTHAIKLPCAWVMTC-----AFSPTGQSVACGG-LDS--VCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQ 165 (389)
Q Consensus 95 ~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~-~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 165 (389)
|..+|..+..+......-..+ +|.++|+.|+.++ .+| .+.+.|+.+++ ...+.... .......
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--------i~QLTdg~g~~~~g~~ 87 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--------ITQLTDGPGDNTFGGF 87 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--------EEE---SS-B-TTT-E
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--------EEECccCCCCCccceE
Confidence 667777777766544433323 5677886665544 455 45666666643 22222221 2222455
Q ss_pred EeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee-CCCCcEEEEeeC-----------------
Q 016458 166 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSC----------------- 227 (389)
Q Consensus 166 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~----------------- 227 (389)
+++++ +.++-...+..|+..|+.+.+....+ ......+-...|. +.+...++..-.
T Consensus 88 ~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy-----~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 88 LSPDD-RALYYVKNGRSLRRVDLDTLEERVVY-----EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp E-TTS-SEEEEEETTTEEEEEETTT--EEEEE-----E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred EecCC-CeEEEEECCCeEEEEECCcCcEEEEE-----ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence 66776 45544555578899999998776665 3344444445554 224444332211
Q ss_pred -----CCceEEEeCCCCCcceeEEeeeccceEEEEEecCC-CEEEEEec---CC-eEEEEECCC-CceeeEeeccCCCCC
Q 016458 228 -----DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSD---DG-TCRLFDIRT-GHQLQVYYQQHGENE 296 (389)
Q Consensus 228 -----dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~---dg-~i~i~d~~~-~~~~~~~~~~~~~~~ 296 (389)
...|.-.|+.++ + ...+......+..+.|+|.. .+|+.|.+ +. .-+||-+++ +.....+.... .
T Consensus 162 ~~a~p~~~i~~idl~tG-~-~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~---~ 236 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKTG-E-RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM---E 236 (386)
T ss_dssp HHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------T
T ss_pred HhhCCCceEEEEECCCC-c-eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC---C
Confidence 123444566654 2 33444456678889999944 44554432 11 124554443 22333332221 1
Q ss_pred CCCeeEEEeCCCCCEEEE-Ee-c---CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458 297 IPHVTSIAFSISGRLLFA-GY-S---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (389)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~-~~-~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 364 (389)
...+..=-|.|||..|.- +. . +..|.-+|..+++..... .......+.-++||++++-=|.|
T Consensus 237 ~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~------~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 237 GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM------EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE------EE-SEEEEEE-TTSSEEEEEE--
T ss_pred CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE------eCCceeeeEEcCCCCEEEecCCC
Confidence 234666679999986554 22 2 335667788777654322 11234456667899877665554
No 374
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=0.0075 Score=48.43 Aligned_cols=176 Identities=13% Similarity=0.102 Sum_probs=118.4
Q ss_pred cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (389)
+.|-...|+++.|+|+.+.|++......-.|+=...|+.+.+++... ...-.+.+..+|++.++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 45556669999999999999988888888888778899998887543 33556788888888888888899999888765
Q ss_pred CCCCCCCcceeee--ccc-ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc-----cCCCCCCeeEEE
Q 016458 142 TDKDGNLPVSRML--SGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF-----QSGHTADVLSVS 213 (389)
Q Consensus 142 ~~~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~v~~~~ 213 (389)
............+ ..+ +...-.++|.|.. ..|+.+=.-.-+.||............... ..-.-..+.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 3211100001111 112 5567789999987 567767666777777665433111110000 001124577888
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVA 239 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (389)
+++..+.+++-+.+++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 99888889999988988888887643
No 375
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.91 E-value=0.002 Score=43.72 Aligned_cols=101 Identities=17% Similarity=0.264 Sum_probs=68.5
Q ss_pred eEEEEEee---CCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC
Q 016458 161 VSCCQYVP---DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (389)
Q Consensus 161 v~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 237 (389)
|+++++.. +|.+.|++|+.|..|++|+-. ..+..+ .....|++++-.. ...|+.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei------~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI------TETDKVTSLCSLG--GGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE------ecccceEEEEEcC--CCEEEEEecCCEEEEEeCc
Confidence 44555543 556889999999999999854 455554 4456788888775 3678999999999999864
Q ss_pred CCCcceeEEeeeccceEEEEEec-CC---CEEEEEecCCeEE
Q 016458 238 VASRAVRTFHGHEGDVNTVKFFP-DG---NRFGTGSDDGTCR 275 (389)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~-~~---~~l~~~~~dg~i~ 275 (389)
. .+-..+. ...+.++++.. ++ .-|++|-.+|.|-
T Consensus 72 ~---RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 Q---RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c---eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 2223332 23366666554 22 3688888888874
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.89 E-value=0.0033 Score=50.04 Aligned_cols=213 Identities=13% Similarity=0.128 Sum_probs=126.4
Q ss_pred EEEEEeeCCCcEEEEeeCCCe-EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-----CCceEEEe
Q 016458 162 SCCQYVPDEDTHLITSSGDQT-CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----DSTARLWD 235 (389)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d 235 (389)
..+.++|..+.-++.+-.-|+ ..++|.........+... ......-.=.|+| ++.+|+..-. -|.|-+||
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~---~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ---EGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc---cCceeecccccCC-CCcEEEeecCCCCCCCceEEEEe
Confidence 356777776666666655554 567888887666655321 1111122335787 7777776543 37899999
Q ss_pred CCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC------------------CeEEEEECCCCceeeEeeccCCCCCC
Q 016458 236 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD------------------GTCRLFDIRTGHQLQVYYQQHGENEI 297 (389)
Q Consensus 236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (389)
.+..-..+-.+..|.-....+.+.+||+.++.+... -++.+.|..++..+........ ...
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~-l~~ 225 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS-LRQ 225 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh-hhh
Confidence 997767777888888888999999999998876431 1334444445544443332211 122
Q ss_pred CCeeEEEeCCCCCEEEEEecCCc-----EEEEEcccceEEEeecCcC---CCCCCCeeEEEECCCCCeEEeeeCCCe-eE
Q 016458 298 PHVTSIAFSISGRLLFAGYSNGD-----CYVWDTLLAKVVLNLGSLQ---NSHEGRITCLGLSADGSALCTGSWDTN-LK 368 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~ 368 (389)
..+..++..+||..++.+-..|. -.+=....++++..+.... ......|-+++.+.+..+++..+-.|. ..
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 24788888888887766543331 1111112333333331100 112346778888876556655555554 45
Q ss_pred EeecceecccCcccC
Q 016458 369 VNLGFWRVQEGALSP 383 (389)
Q Consensus 369 i~~~~W~~~~~~~~~ 383 (389)
+ ||..+|.+..
T Consensus 306 i----~da~tG~vv~ 316 (366)
T COG3490 306 I----WDAATGAVVS 316 (366)
T ss_pred E----EEcCCCcEEe
Confidence 5 9999998764
No 377
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.87 E-value=0.0097 Score=54.10 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=120.4
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC------eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE
Q 016458 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD------VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT 245 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 245 (389)
..++.++.++.|.-+|..+++.+..+........... -..+++. +..++.++.|+.|.-+|.+++ +.+-.
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TG-k~~W~ 145 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTG-KVVWS 145 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCC-CEEee
Confidence 3677778888999999999998887743211000000 0112222 245667788999999999887 44333
Q ss_pred Eeee-ccceEEEEEec---CCCEEEEEe------cCCeEEEEECCCCceeeEeeccCCCC--------------------
Q 016458 246 FHGH-EGDVNTVKFFP---DGNRFGTGS------DDGTCRLFDIRTGHQLQVYYQQHGEN-------------------- 295 (389)
Q Consensus 246 ~~~~-~~~i~~~~~~~---~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~-------------------- 295 (389)
.... ...-..+.-+| ++ .++++. .+|.|..+|.++++.+..+.......
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 2211 00001111122 34 455543 26899999999999887765432210
Q ss_pred -------CCCCeeEEEeCCCCCEEEEEecC-----C-----------cEEEEEcccceEEEeecCcCCCCCC-------C
Q 016458 296 -------EIPHVTSIAFSISGRLLFAGYSN-----G-----------DCYVWDTLLAKVVLNLGSLQNSHEG-------R 345 (389)
Q Consensus 296 -------~~~~i~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~~~~-------~ 345 (389)
....-..+++.|...+++.+..+ + .|.-.|+++|+....+... .|+. .
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~--~~D~wD~d~~~~ 302 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT--PHDEWDYDGVNE 302 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC--CCCCccccCCCC
Confidence 00112245777777777776532 2 6778899999999888542 2221 1
Q ss_pred eeEEEECCCCC---eEEeeeCCCeeEEeecceecccCccc
Q 016458 346 ITCLGLSADGS---ALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 346 v~~~~~~~~~~---~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
..-+.+..+|+ .++.+..+|.+.+ .|..+|++.
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~v----lDr~tG~~i 338 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYV----LDRTNGKLL 338 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEE----EECCCCcee
Confidence 12222334666 7889999999999 999999984
No 378
>PHA02713 hypothetical protein; Provisional
Probab=97.85 E-value=0.0031 Score=57.83 Aligned_cols=222 Identities=8% Similarity=0.033 Sum_probs=104.9
Q ss_pred cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC------CcEEEEeCCCCCCCCCCCcceeeecccccceEE
Q 016458 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC 163 (389)
Q Consensus 90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (389)
.+..||..+.+-...-..+..........-++..++.||.+ ..+..||..+.. +.....+....... +
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~-----W~~~~~m~~~R~~~-~ 346 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI-----HVELPPMIKNRCRF-S 346 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe-----EeeCCCCcchhhce-e
Confidence 46778876654322211111111111122366777777754 246777876532 11111111111111 2
Q ss_pred EEEeeCCCcEEEEeeCCC-----eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC---------
Q 016458 164 CQYVPDEDTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--------- 229 (389)
Q Consensus 164 ~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------- 229 (389)
++. -+ +.+.+.||.++ .+..||..+..-...-+. .....-.+++.. ++.+.+.|+.++
T Consensus 347 ~~~-~~-g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m----p~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 347 LAV-ID-DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM----PIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred EEE-EC-CEEEEECCcCCCCCCceEEEEECCCCeEEECCCC----CcccccccEEEE--CCEEEEEeCCCcccccccccc
Confidence 222 23 36777787654 488899887754432211 111111122222 667777777653
Q ss_pred --------------ceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCEEEEEecC------CeEEEEECCC-CceeeE
Q 016458 230 --------------TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD------GTCRLFDIRT-GHQLQV 287 (389)
Q Consensus 230 --------------~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~ 287 (389)
.+..||..+.. ..+..+....... +++ .-++++.+.|+.+ ..+..||..+ .+-...
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~ 496 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI 496 (557)
T ss_pred cccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc
Confidence 46677776541 1111111111111 122 2256677777654 2467888876 332221
Q ss_pred eeccCCCCCCCCeeEEEeCCCCCEEEEEecCC--cEEEEEcccceEE
Q 016458 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVV 332 (389)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~ 332 (389)
-.... .......+.+ +|+..++|+.+| .+..||..+.+-.
T Consensus 497 ~~m~~---~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 497 TTTES---RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred cccCc---ccccceeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 11111 1111222233 678888888888 6777887665544
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.83 E-value=0.0042 Score=56.86 Aligned_cols=189 Identities=12% Similarity=0.064 Sum_probs=101.4
Q ss_pred CcEEEEEEcCCCCeEEEEe------cCC--cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---------
Q 016458 68 GKVYSLDWTSERNRIVSAS------QDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD--------- 130 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~------~dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 130 (389)
..+...+++|+|+.+|... .|+ .|.+++. .+.. ..+... .....-.|+|+|..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4578899999999877654 244 4444454 2222 333222 237788999998877776432
Q ss_pred ---CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE---EeCCCCeeEEEecCcccCC
Q 016458 131 ---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL---WDITTGLRTSVFGGEFQSG 204 (389)
Q Consensus 131 ---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~ 204 (389)
+.+.+.+++.+. ... ...+.|..+.|+|||..+++.. +|.|.+ -....+.....-.......
T Consensus 427 ~~~gql~~~~vd~ge-------~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 427 PATGQLARTPVDASA-------VAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred CCCceEEEEeccCch-------hhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 222222332211 111 2346799999999996544444 477777 4444454111100001123
Q ss_pred CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--eccceEEEEEecCCCEEEEEecCCeEE
Q 016458 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (389)
Q Consensus 205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (389)
....+.++.|.+ ++.++ ++..++.-.+|.+.-.......+.. ...++..++-+++ .++....+|.+.
T Consensus 495 l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cCCccccceEec-CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 334468899997 55544 5555555555544332222222222 2456777776653 455556666443
No 380
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.82 E-value=0.011 Score=50.56 Aligned_cols=235 Identities=17% Similarity=0.167 Sum_probs=103.0
Q ss_pred CCcEEEEec-CCCcEEEEeCCCCCCCCCCCcceeeecc---cc----cceEEEEEeeCCCcEEEEee------CCCeEEE
Q 016458 120 TGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSG---HK----GYVSCCQYVPDEDTHLITSS------GDQTCVL 185 (389)
Q Consensus 120 ~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~---~~----~~v~~~~~~~~~~~~l~~~~------~dg~i~i 185 (389)
+.++|+..+ ..+.|+|.|+.+... ...+.+.+.. +. .....+...|+| .+++++- .-|-+.+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr---~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPR---KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVL 161 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TT---S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCC---CCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEE
Confidence 456666655 678999999986331 2223333332 11 122334445665 4666542 2356888
Q ss_pred EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee--------------------CCCceEEEeCCCCCcceeE
Q 016458 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--------------------CDSTARLWDTRVASRAVRT 245 (389)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~ 245 (389)
+|-++.+........ ......-..+-+.| ..+.+++.. ...++.+||+... +.++.
T Consensus 162 lD~~tf~v~g~We~~--~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-~~~Q~ 237 (461)
T PF05694_consen 162 LDGETFEVKGRWEKD--RGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR-KLLQT 237 (461)
T ss_dssp E-TTT--EEEE--SB---TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT-EEEEE
T ss_pred EcCccccccceeccC--CCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC-cEeeE
Confidence 898887777766322 22344556777888 667777743 2458999999987 67777
Q ss_pred Eeeecc--ceEEEEEec--CCCEEEE-EecCCeEEEEEC-CCCce----eeEeeccCCCC----C--------CCCeeEE
Q 016458 246 FHGHEG--DVNTVKFFP--DGNRFGT-GSDDGTCRLFDI-RTGHQ----LQVYYQQHGEN----E--------IPHVTSI 303 (389)
Q Consensus 246 ~~~~~~--~i~~~~~~~--~~~~l~~-~~~dg~i~i~d~-~~~~~----~~~~~~~~~~~----~--------~~~i~~~ 303 (389)
+.--.. .+..+.|.. +..+=++ +.-.++|..|-- ..+.- +..+....... . ..-|+.+
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI 317 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI 317 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence 654322 345666654 3444333 334445554433 33321 11111110000 0 1247999
Q ss_pred EeCCCCCEEEEEe-cCCcEEEEEcccc---eEEEeecC--cC----------CCCCCCeeEEEECCCCCeEEeee
Q 016458 304 AFSISGRLLFAGY-SNGDCYVWDTLLA---KVVLNLGS--LQ----------NSHEGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 304 ~~~~~~~~l~~~~-~dg~i~i~d~~~~---~~~~~~~~--~~----------~~~~~~v~~~~~~~~~~~l~~~~ 362 (389)
.+|.|.++|++++ .+|.|+.||+... +....+.. .. ..-.+...-+..|-||+.|...+
T Consensus 318 ~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 318 LISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9999999998876 4899999999753 22222210 00 01123457788899998886654
No 381
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.80 E-value=0.011 Score=47.27 Aligned_cols=192 Identities=11% Similarity=0.127 Sum_probs=121.2
Q ss_pred cceEEEEEeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeC
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 236 (389)
.....+.|..++ .++-+.+.-| .|+.+|+.+++....... ...-.-..++.. ++.+....=.++...+||.
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l----~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPL----PPRYFGEGITIL--GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-----TTT--EEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEEC----CccccceeEEEE--CCEEEEEEecCCeEEEEcc
Confidence 345567787765 6667777665 799999999987766532 222233445555 4566666677899999999
Q ss_pred CCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
.+. +.+.++. ..+.=..++ .+++.|+.......|+++|..+.+....+...........++.+.+- +|...|=.-
T Consensus 118 ~tl-~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 118 NTL-KKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp TTT-EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred ccc-eEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 876 6666664 334456676 46777887777889999999988887777665544444457778775 666555555
Q ss_pred cCCcEEEEEcccceEEEeecCcC-----------CCCCCCeeEEEECCCCCeEEeee
Q 016458 317 SNGDCYVWDTLLAKVVLNLGSLQ-----------NSHEGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~ 362 (389)
....|...|..+|+....+.... .....-.+.|||+|....|...|
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66788999999998887653100 11245689999988665554444
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.017 Score=48.28 Aligned_cols=224 Identities=14% Similarity=0.113 Sum_probs=125.4
Q ss_pred EEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcce
Q 016458 73 LDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS 151 (389)
Q Consensus 73 ~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 151 (389)
-.|.++.. ++.+--..+.|.-|+..+++. ..+..+.. +.++..-..+..|+++. .-+.+++.+.+... ....
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~-~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~---t~~~ 102 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGG-FSSGALIDAGGRLIACE--HGVRLLDPDTGGKI---TLLA 102 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCC-cccceeecCCCeEEEEc--cccEEEeccCCcee---EEec
Confidence 34667666 455555678888888775543 23333333 34443333444444442 23566666433210 0011
Q ss_pred eeecc-cccceEEEEEeeCCCcEEEEeeCC------------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458 152 RMLSG-HKGYVSCCQYVPDEDTHLITSSGD------------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (389)
Q Consensus 152 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (389)
....+ .....+.+...|+|. +..++.. |.|+.+|. .+...... ..+-..-+.++|+|++
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-----~~~~~~~NGla~SpDg 174 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-----DDDLTIPNGLAFSPDG 174 (307)
T ss_pred cccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-----cCcEEecCceEECCCC
Confidence 11111 124556778888873 3333222 44555554 45555544 3445567889999944
Q ss_pred CcEEEEeeCCCceEEEeCCC--C---Cc-ceeEEeeeccceEEEEEecCCCEEEEEecCC-eEEEEECCCCceeeEeecc
Q 016458 219 SRMFVSGSCDSTARLWDTRV--A---SR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQ 291 (389)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~--~---~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~ 291 (389)
..++++=+..+.|.-|++.. . .+ ....+....+..-.++...+|.+.+++..+| .|.+|+.. ++.+..+..+
T Consensus 175 ~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 175 KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 44555555568888887762 1 11 1122223345667788888888876555554 89999988 8888888776
Q ss_pred CCCCCCCCeeEEEeC-CCCCEEEEEec
Q 016458 292 HGENEIPHVTSIAFS-ISGRLLFAGYS 317 (389)
Q Consensus 292 ~~~~~~~~i~~~~~~-~~~~~l~~~~~ 317 (389)
... +++++|- |+.+.|++.+.
T Consensus 254 ~~~-----~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 254 VKR-----PTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCC-----CccceEeCCCcCEEEEEec
Confidence 433 7788875 44555555443
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.77 E-value=0.014 Score=53.60 Aligned_cols=232 Identities=13% Similarity=0.188 Sum_probs=118.5
Q ss_pred CCCCeEEEEecC------CcEEEEeCCCCCeeEEEeeCCCc-EEEEEECCCCcEEEEecCC-C-----cEEEEeCCCCCC
Q 016458 77 SERNRIVSASQD------GRLIVWNALTSQKTHAIKLPCAW-VMTCAFSPTGQSVACGGLD-S-----VCSIFNLNSPTD 143 (389)
Q Consensus 77 ~~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d-g-----~i~vw~~~~~~~ 143 (389)
..+.+++.|+.+ ..+..||..++.-.......... -.+++. -++...++||.| | .+..||....+
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~- 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ- 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCc-
Confidence 345566777766 36778888776443333322222 222333 356788889888 3 46677776533
Q ss_pred CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe-----EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-----CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (389)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (389)
+.....+........ ++.. ++.+.+.||.||. +-.||..+.+....-+ ............-+
T Consensus 361 ----W~~~a~M~~~R~~~~-v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~------m~~~r~~~gv~~~~ 427 (571)
T KOG4441|consen 361 ----WTPVAPMNTKRSDFG-VAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP------MLTRRSGHGVAVLG 427 (571)
T ss_pred ----eeccCCccCccccce-eEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC------CCcceeeeEEEEEC
Confidence 222222222211111 1111 2467888888864 7778877765443321 11122222222237
Q ss_pred CcEEEEeeCCC------ceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCEEEEEecCCe-----EEEEECCCCceee
Q 016458 219 SRMFVSGSCDS------TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-----CRLFDIRTGHQLQ 286 (389)
Q Consensus 219 ~~~l~~~~~dg------~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~ 286 (389)
+.+.++|+.++ ++..||..+.. ..+..+..-..... ++.- ++.+.+.||.|+. |..||..+.+-..
T Consensus 428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 78888888654 46678776541 11111111111111 2222 6778888887763 7778887765444
Q ss_pred EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-----cEEEEEcccce
Q 016458 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAK 330 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 330 (389)
.-...... ..+.... -++...++|+.|| +|..||..+.+
T Consensus 506 v~~m~~~r---s~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 506 VAPMTSPR---SAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccCcccc---ccccEEE--ECCEEEEEecccCccccceeEEcCCCCCc
Confidence 32111111 0111122 2566777777776 46667665544
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0016 Score=56.28 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=95.5
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC------CcEEEEeeCCCceEEEeCCCCCc-cee
Q 016458 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN------SRMFVSGSCDSTARLWDTRVASR-AVR 244 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-~~~ 244 (389)
-++.++.....|+-.|++.|+.+... ..+.. |.-+.+.|.. ...-+.|-.+..|.-||.|-... .+.
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEW-----k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEW-----KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEe-----eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 34556666788999999999999988 33333 6666666621 11234577789999999986544 222
Q ss_pred EEeee----ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc
Q 016458 245 TFHGH----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD 320 (389)
Q Consensus 245 ~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 320 (389)
....| .....|.+-..+| +|++|+.+|.|++||- .+....+..+..+ .+|..+..+.+|++|++.+.. .
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG----~~I~hVdvtadGKwil~Tc~t-y 493 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLG----DAIKHVDVTADGKWILATCKT-Y 493 (644)
T ss_pred eeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccC----CceeeEEeeccCcEEEEeccc-E
Confidence 22223 2345566665555 7999999999999996 5555544444333 369999999999998877554 6
Q ss_pred EEEEEc
Q 016458 321 CYVWDT 326 (389)
Q Consensus 321 i~i~d~ 326 (389)
+.+.++
T Consensus 494 LlLi~t 499 (644)
T KOG2395|consen 494 LLLIDT 499 (644)
T ss_pred EEEEEE
Confidence 666664
No 385
>PHA02713 hypothetical protein; Provisional
Probab=97.74 E-value=0.002 Score=59.04 Aligned_cols=192 Identities=9% Similarity=0.036 Sum_probs=96.1
Q ss_pred CCCeEEEEecC------CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC-----cEEEEeCCCCCCCCC
Q 016458 78 ERNRIVSASQD------GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-----VCSIFNLNSPTDKDG 146 (389)
Q Consensus 78 ~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~ 146 (389)
++..++.|+.+ ..+..||..+..-......+...-......-+++..+.||.++ .+..||..+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~---- 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK---- 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe----
Confidence 45566666643 2466778766542211111111111111223677788888764 47788877632
Q ss_pred CCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----------------------CeEEEEeCCCCeeEEEecCcccC
Q 016458 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----------------------QTCVLWDITTGLRTSVFGGEFQS 203 (389)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------------------g~i~iwd~~~~~~~~~~~~~~~~ 203 (389)
+.....+.........+. -++ .+.+.||.+ ..+..||..+.+-...-+.
T Consensus 379 -W~~~~~mp~~r~~~~~~~--~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---- 450 (557)
T PHA02713 379 -WKMLPDMPIALSSYGMCV--LDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---- 450 (557)
T ss_pred -EEECCCCCcccccccEEE--ECC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC----
Confidence 111111111111111111 233 667777654 2477888887755433211
Q ss_pred CCCCCeeEEEeeCCCCcEEEEeeCCC------ceEEEeCCC-C-CcceeEEeeeccceEEEEEecCCCEEEEEecCC--e
Q 016458 204 GHTADVLSVSISGSNSRMFVSGSCDS------TARLWDTRV-A-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG--T 273 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~ 273 (389)
.....-.+++.. ++.+.+.|+.++ .+..||..+ . ...+..+.........+.+ ++++.++|+.+| .
T Consensus 451 ~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 451 WTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML 526 (557)
T ss_pred CcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee
Confidence 111111223333 567777777542 467888885 2 2223333322222233333 778889999888 6
Q ss_pred EEEEECCCCcee
Q 016458 274 CRLFDIRTGHQL 285 (389)
Q Consensus 274 i~i~d~~~~~~~ 285 (389)
+..||..+.+-.
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 777877765543
No 386
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=6e-05 Score=57.52 Aligned_cols=106 Identities=10% Similarity=0.103 Sum_probs=62.6
Q ss_pred CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec
Q 016458 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 250 (389)
Q Consensus 171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 250 (389)
..-++.|+.+|.|.+|+........... ......+.++...-..+.+..++..+|.|+.|++.-. +.+.....|+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~----~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV----CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh----hcccccceeccccccccceeEEeccCCceeeeccccC-ceeeeecccc
Confidence 4569999999999999876321111110 1122233333333335568889999999999998765 4444445555
Q ss_pred -cceEEEEEecCCCEEEEE--ecCCeEEEEECCC
Q 016458 251 -GDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRT 281 (389)
Q Consensus 251 -~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~ 281 (389)
.++.....+..+..++.+ +.|..++.|++..
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 444444444445555555 5555556665543
No 387
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.72 E-value=0.0037 Score=57.22 Aligned_cols=160 Identities=15% Similarity=0.088 Sum_probs=86.9
Q ss_pred CCeeEEEeeCCCCcEEEEee------CCC--ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC-CeEEEE
Q 016458 207 ADVLSVSISGSNSRMFVSGS------CDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GTCRLF 277 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~ 277 (389)
..+.+.+++| +++.++... .|+ .|.+++... .. ..+.. ......-.|+|+|..|++.... ..+++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGG--VA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCC--cc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 4678889999 555554433 233 555556432 22 22221 2237888999998888777533 122232
Q ss_pred ECCCCceeeEeeccCCC---CCCCCeeEEEeCCCCCEEEEEecCCcEEE---EEcccceEEE-eecCcCCCCCCCeeEEE
Q 016458 278 DIRTGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYV---WDTLLAKVVL-NLGSLQNSHEGRITCLG 350 (389)
Q Consensus 278 d~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~-~~~~~~~~~~~~v~~~~ 350 (389)
+-.....+......... .....|..+.|||||..++... +|.|++ -....|.... ....+...-...+.++.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 22111122211111100 1123499999999999888765 577777 4444454111 11111123334468899
Q ss_pred ECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 351 LSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 351 ~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
|..++.++ ++..++...+ |.+.
T Consensus 504 W~~~~~L~-V~~~~~~~~v----~~v~ 525 (591)
T PRK13616 504 WRTGDSLV-VGRSDPEHPV----WYVN 525 (591)
T ss_pred EecCCEEE-EEecCCCCce----EEEe
Confidence 99998854 5566666666 6654
No 388
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.67 E-value=0.00017 Score=38.81 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=29.5
Q ss_pred CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458 340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR 375 (389)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~ 375 (389)
..|...|.++.|.+++.++++++.|+.+++ |+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~----~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKL----WD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEE----cC
Confidence 567889999999999999999999999999 86
No 389
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.55 E-value=0.042 Score=46.91 Aligned_cols=253 Identities=15% Similarity=0.151 Sum_probs=118.9
Q ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCc-ceeeecccccceEEEEEeeC--CCcEEEEeeC-C------
Q 016458 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP-VSRMLSGHKGYVSCCQYVPD--EDTHLITSSG-D------ 180 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~-d------ 180 (389)
..+.|+|.|+|+++++ ...|.|.+++..... . .... ..............++++|+ .+.+|+.... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~-~-~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSL-K-TPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEE-C-EEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcC-c-ceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 3678999999887665 459999999933211 0 0000 00112234556789999994 1123333332 1
Q ss_pred --CeEEEEeCCCC--e--eEEEecCcccC--CCCCCeeEEEeeCCCCcEEEEeeCCCc-------------eEEEeCCCC
Q 016458 181 --QTCVLWDITTG--L--RTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSCDST-------------ARLWDTRVA 239 (389)
Q Consensus 181 --g~i~iwd~~~~--~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~ 239 (389)
..|.-|....+ . ....+...... .....-..+.|.| ++.++++.+..+. |.-.+....
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCc
Confidence 24554554433 1 01111000001 2233456799999 6666666554332 222222211
Q ss_pred C-----------cceeE-EeeeccceEEEEEecC-CCEEEEE-ecCCeEEEEECCCCcee----eE---------ee-cc
Q 016458 240 S-----------RAVRT-FHGHEGDVNTVKFFPD-GNRFGTG-SDDGTCRLFDIRTGHQL----QV---------YY-QQ 291 (389)
Q Consensus 240 ~-----------~~~~~-~~~~~~~i~~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~~~----~~---------~~-~~ 291 (389)
. ..... -.++.+ ...++|+|. |.++++= +.++.=.|.-+..+... .. .. ..
T Consensus 159 ~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 159 IPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp B-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0 00111 123333 467999998 6555432 22222222222222110 00 00 00
Q ss_pred CCC---------CCCCCeeEEEeCC-------CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 292 HGE---------NEIPHVTSIAFSI-------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 292 ~~~---------~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
... .....++.+.|-. .|.++++.-..+.|....+.....+.....+......++..+++.|||
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 000 0112355666643 345666666667888888875543333322224555689999999999
Q ss_pred CeEEeeeCCCeeE
Q 016458 356 SALCTGSWDTNLK 368 (389)
Q Consensus 356 ~~l~~~~~dg~i~ 368 (389)
.+.++.+.+|.|.
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9988888888773
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00071 Score=63.21 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=76.7
Q ss_pred CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (389)
....++.|+..|.+...|.+..-.+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++....+.....+. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~-t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV-T 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc-c
Confidence 345788899999999999886423333333346789999999999999999999999999999988888776654331 1
Q ss_pred CCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458 298 PHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (389)
.+..+.+..++..++++...|. +|.
T Consensus 177 -~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 177 -GVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred -eEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 2444555556667888877776 554
No 391
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.52 E-value=0.00049 Score=38.84 Aligned_cols=34 Identities=21% Similarity=0.509 Sum_probs=29.8
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK 101 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 101 (389)
...|.+++|+|..++||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 346999999999999999999999999998 5544
No 392
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.51 E-value=0.021 Score=49.56 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=54.5
Q ss_pred ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC-------------C-CCE-EEE
Q 016458 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-------------S-GRL-LFA 314 (389)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~-~~~-l~~ 314 (389)
...+.+++.+|++++.++...=|.|.++|+..+..+..+...... ....+....-.. . ..+ ++-
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 345788999999998888888899999999988766665443221 100111100000 0 112 223
Q ss_pred EecCCcEEEEEcccceEEEeec
Q 016458 315 GYSNGDCYVWDTLLAKVVLNLG 336 (389)
Q Consensus 315 ~~~dg~i~i~d~~~~~~~~~~~ 336 (389)
.-.-|.|.||++++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 4567899999998888877663
No 393
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.025 Score=45.25 Aligned_cols=238 Identities=12% Similarity=0.107 Sum_probs=130.4
Q ss_pred EEEEEcCCCC-eEEEEecCCc-EEEEeCCCCCeeEEEeeCCCc--EEEEEECCCCcEEEEecC-----CCcEEEEeCCCC
Q 016458 71 YSLDWTSERN-RIVSASQDGR-LIVWNALTSQKTHAIKLPCAW--VMTCAFSPTGQSVACGGL-----DSVCSIFNLNSP 141 (389)
Q Consensus 71 ~~~~~~~~~~-~l~~~~~dg~-v~iw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~ 141 (389)
..|+|+|... -++.+-.-|+ ..++|....+...++....+. --.=.|||+|.+|+..-. -|.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3577777543 4555655554 467888887776666543321 223469999999987643 378999999853
Q ss_pred CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-----------------CCeEEEEeCCCCeeEEEecCcccCC
Q 016458 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----------------DQTCVLWDITTGLRTSVFGGEFQSG 204 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~ 204 (389)
- .....+..|.-....+.+.+||..++++.+. .-++.+.|..++..+....... ..
T Consensus 151 f------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~-~l 223 (366)
T COG3490 151 F------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA-SL 223 (366)
T ss_pred c------ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch-hh
Confidence 2 3455566777777789999998544433330 1123333433443332221100 12
Q ss_pred CCCCeeEEEeeCCCCcEEEEeeCCCc----eEEEeCCCCCcceeEEe-------eeccceEEEEEecCCCEEEEEe-cCC
Q 016458 205 HTADVLSVSISGSNSRMFVSGSCDST----ARLWDTRVASRAVRTFH-------GHEGDVNTVKFFPDGNRFGTGS-DDG 272 (389)
Q Consensus 205 ~~~~v~~~~~~~~~~~~l~~~~~dg~----i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~-~dg 272 (389)
+.-.+..++..+ ++..++.+-..|. --+.-.....+++..+. .....|-+++.+.+..+++..+ ..+
T Consensus 224 ~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN 302 (366)
T COG3490 224 RQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN 302 (366)
T ss_pred hhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence 334566677665 4444443322221 00001111112222222 1234567788876555554444 556
Q ss_pred eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (389)
Q Consensus 273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (389)
...+||..++.....-.... ...++ +...-+++.+.+|.+.++.
T Consensus 303 ~~vi~da~tG~vv~~a~l~d-------aaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 303 RAVIWDAATGAVVSEAALPD-------AAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eEEEEEcCCCcEEecccccc-------cccce--eccCceEEecCCceEEecc
Confidence 78899999998776543321 23333 3344466677788888774
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.49 E-value=0.049 Score=50.08 Aligned_cols=226 Identities=14% Similarity=0.180 Sum_probs=117.9
Q ss_pred CCCCcEEEEecCCC------cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC------CeEEE
Q 016458 118 SPTGQSVACGGLDS------VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVL 185 (389)
Q Consensus 118 ~~~~~~l~~~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i 185 (389)
+..+..++.|+.++ .+..||...+. +.....+. ....-.+++... +.++++||.| ..+..
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~-----w~~~a~m~-~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~ 353 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNE-----WSSLAPMP-SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVER 353 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCc-----EeecCCCC-cccccccEEEEC--CEEEEEccccCCCcccceEEE
Confidence 33466677777763 57778877642 11111122 222234445554 3688889888 35778
Q ss_pred EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCc-----eEEEeCCCCCcceeEEeeeccceEEEEE-e
Q 016458 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST-----ARLWDTRVASRAVRTFHGHEGDVNTVKF-F 259 (389)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~i~~~~~-~ 259 (389)
||..+++-...- .. .....-..++.. ++.+.++|+.||. +..||..+.. ............+... .
T Consensus 354 YD~~~~~W~~~a-~M---~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~ 425 (571)
T KOG4441|consen 354 YDPRTNQWTPVA-PM---NTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAV 425 (571)
T ss_pred ecCCCCceeccC-Cc---cCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc--ccccCCCCcceeeeEEEE
Confidence 998887744422 11 111111222222 7788999999874 6777776541 1111111111122211 1
Q ss_pred cCCCEEEEEecCC------eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc-----EEEEEccc
Q 016458 260 PDGNRFGTGSDDG------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-----CYVWDTLL 328 (389)
Q Consensus 260 ~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~ 328 (389)
-+|.+.++||.++ ++..||..+..-...-....... -..++. -++...++|+.|+. |..||..+
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~----~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS----GFGVAV-LNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc----cceEEE-ECCEEEEECCccCCCccceEEEEcCCC
Confidence 2677788888554 57788877755433222211110 111222 36777788887763 67788776
Q ss_pred ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458 329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 368 (389)
.+....-. .......+-...+ +++..++|+.||.-.
T Consensus 501 ~~W~~v~~--m~~~rs~~g~~~~--~~~ly~vGG~~~~~~ 536 (571)
T KOG4441|consen 501 NQWTMVAP--MTSPRSAVGVVVL--GGKLYAVGGFDGNNN 536 (571)
T ss_pred CceeEccc--CccccccccEEEE--CCEEEEEecccCccc
Confidence 55433211 0222222222232 577888888887543
No 395
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.07 Score=48.72 Aligned_cols=226 Identities=8% Similarity=0.087 Sum_probs=116.5
Q ss_pred cCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458 67 AGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (389)
Q Consensus 67 ~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (389)
-+...++..+|..- -+. +.--.|+||+. +|+.+..+....+.+..+.|+.+.. |++...+|++++|++-......
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~ 118 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIES 118 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhcc
Confidence 34455666665321 111 23346888885 5777776666666899999997665 5566789999999987633111
Q ss_pred CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC--cEEE
Q 016458 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS--RMFV 223 (389)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~ 223 (389)
. ..........|..+.+..+| ++.-..+|.+.+-+-........++.. +....+-.|....++.. ..++
T Consensus 119 ~----svg~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i~~~~~~~~~~~~di--P~~~~~~~~Wt~~~~~~~~~~ll 189 (829)
T KOG2280|consen 119 N----SVGFESQMSDIVECRFFHNG---VAVLTVSGQVILINGVEEPKLRKMPDI--PYNELPKSCWTVFQPHRQSTILL 189 (829)
T ss_pred c----ccccccccCceeEEEEecCc---eEEEecCCcEEEEcCCCcchhhhCCCC--CCccCCCcceeEecCCCcceeEE
Confidence 0 00011222345555555554 444445555554432222222222110 11112223333333111 1111
Q ss_pred EeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEE
Q 016458 224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303 (389)
Q Consensus 224 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 303 (389)
--...--..++-..........+....+.+..+..||+.++|+--..+|.|.+-+....+....+...... +...+
T Consensus 190 ~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~----~p~qm 265 (829)
T KOG2280|consen 190 DVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD----PPKQM 265 (829)
T ss_pred eechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC----chHhc
Confidence 11100001122222221222233323456888999999999999999999999998877776666543222 12366
Q ss_pred EeCCCC
Q 016458 304 AFSISG 309 (389)
Q Consensus 304 ~~~~~~ 309 (389)
+|..+.
T Consensus 266 ~Wcgnd 271 (829)
T KOG2280|consen 266 AWCGND 271 (829)
T ss_pred eeecCC
Confidence 665443
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.00062 Score=63.58 Aligned_cols=101 Identities=27% Similarity=0.321 Sum_probs=73.1
Q ss_pred CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCC
Q 016458 261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340 (389)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 340 (389)
.+..++.|+..|.+...|+...-. . .+.+.....+|++++|+.+|..++.|-.+|.|.+||+..++....+.....
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~--~--~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG--P--LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc--h--hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 456789999999999999875411 1 122344556799999999999999999999999999999999988844323
Q ss_pred CCCCCeeEEEECCCCCeEEeeeCCCe
Q 016458 341 SHEGRITCLGLSADGSALCTGSWDTN 366 (389)
Q Consensus 341 ~~~~~v~~~~~~~~~~~l~~~~~dg~ 366 (389)
.+.+.+. +.+..++..++++..-|.
T Consensus 174 p~t~vi~-v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIF-VGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ccceEEE-EEEeCCCcEEEEccCCCc
Confidence 3333333 334445557777777776
No 397
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.40 E-value=0.076 Score=46.30 Aligned_cols=155 Identities=9% Similarity=0.082 Sum_probs=88.6
Q ss_pred CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe---eCCCcEEEEeeCCCeEEEEeCCCCeeE--
Q 016458 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV---PDEDTHLITSSGDQTCVLWDITTGLRT-- 194 (389)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~-- 194 (389)
+...+++|+..|.++||+............+.. .-..+|..+..- +..+...++.-.-..+.+|.+......
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE---ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 446899999999999999965432222222222 233566666543 322233444466677888877321100
Q ss_pred ----EEecCcccCCCCCCeeEEEeeCC----CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEE
Q 016458 195 ----SVFGGEFQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (389)
Q Consensus 195 ----~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (389)
..+..............+++-|. ...++.+-+.||.+.+|+-+.. ....+.+.---...++|.+.-+.|+
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--~f~~~lp~~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--AFSRFLPDFLLPGPLCYCPRTDSFV 190 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--EEEEEcCCCCCCcCeEEeecCCEEE
Confidence 01000000122233444444432 2478888999999999997643 2222222222234478888888999
Q ss_pred EEecCCeEEEEEC
Q 016458 267 TGSDDGTCRLFDI 279 (389)
Q Consensus 267 ~~~~dg~i~i~d~ 279 (389)
+++.+..+..|..
T Consensus 191 t~sss~~l~~Yky 203 (418)
T PF14727_consen 191 TASSSWTLECYKY 203 (418)
T ss_pred EecCceeEEEecH
Confidence 9999999998875
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.40 E-value=0.068 Score=45.65 Aligned_cols=247 Identities=13% Similarity=0.111 Sum_probs=117.5
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe---eEEE----eeCCCcEEEEEECCC---CcEEE-EecCC-------
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQK---THAI----KLPCAWVMTCAFSPT---GQSVA-CGGLD------- 130 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~-~~~~d------- 130 (389)
..++|+|.|+|++|++ ...|.|++++ ..+.. +..+ .........++++|+ ..+|. +.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5699999999 44443 2222 122356899999994 33333 33311
Q ss_pred -CcEEEEeCCCCCCCCC-CCcceeeecc---cccceEEEEEeeCCCcEEEEeeCC-------------CeEEEEeCCCCe
Q 016458 131 -SVCSIFNLNSPTDKDG-NLPVSRMLSG---HKGYVSCCQYVPDEDTHLITSSGD-------------QTCVLWDITTGL 192 (389)
Q Consensus 131 -g~i~vw~~~~~~~~~~-~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~ 192 (389)
..|.-|.......... ...+...... ....-..|.|.|++ .++++.+.. |.|.-.+... .
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~ 158 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-S 158 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-S
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccC-c
Confidence 2344444443210000 0011111111 22334569999998 555554432 2333333221 1
Q ss_pred eEEEecC--------c-ccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCCC-----------------------
Q 016458 193 RTSVFGG--------E-FQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVA----------------------- 239 (389)
Q Consensus 193 ~~~~~~~--------~-~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~----------------------- 239 (389)
.....+. + +..++ .....++|+|..+.++++=. .++.=.|.-+..+
T Consensus 159 ~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 159 IPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp B-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0000000 0 00111 23467899984366554421 1221112111110
Q ss_pred -----CcceeEEeeeccceEEEEEec-------CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458 240 -----SRAVRTFHGHEGDVNTVKFFP-------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (389)
Q Consensus 240 -----~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (389)
..+...+..| ..+..+.|.. .+.+|++.-..+.|....+.....+....... ......+..+++.|
T Consensus 238 ~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-GGFGGRPRDVAQGP 315 (331)
T ss_dssp S-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-TTSSS-EEEEEEET
T ss_pred CCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-ccCCCCceEEEEcC
Confidence 0123333333 4566777764 45566666667788888887554332222211 12222589999999
Q ss_pred CCCEEEEEecCCcEE
Q 016458 308 SGRLLFAGYSNGDCY 322 (389)
Q Consensus 308 ~~~~l~~~~~dg~i~ 322 (389)
||.+.++.+.+|.|+
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999888888888774
No 399
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.37 E-value=0.14 Score=48.67 Aligned_cols=203 Identities=16% Similarity=0.207 Sum_probs=120.5
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC---CCCeeEEEeeC---------------CCCcEEEEeeCCCceEE
Q 016458 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH---TADVLSVSISG---------------SNSRMFVSGSCDSTARL 233 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~---------------~~~~~l~~~~~dg~i~i 233 (389)
..++.++.++.|.-.|..+++.+..+........ ......+.+.. .....++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 4677788889999999999999888754321110 00112233321 12347778888999999
Q ss_pred EeCCCCCcceeEEeeeccce-------------EEEEEec--CCCEEEEEec----------CCeEEEEECCCCceeeEe
Q 016458 234 WDTRVASRAVRTFHGHEGDV-------------NTVKFFP--DGNRFGTGSD----------DGTCRLFDIRTGHQLQVY 288 (389)
Q Consensus 234 ~d~~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~ 288 (389)
.|.+++ +.+..+.. ++.+ ..+.-.| .+..+++|+. +|.|+-+|+++++....+
T Consensus 275 LDA~TG-k~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 275 LDADTG-KLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EECCCC-CEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999988 44433321 1111 1111222 2345666643 688999999999998887
Q ss_pred eccCCCCC-------------CCCeeEEEeCCCCCEEEEEe------------------cCCcEEEEEcccceEEEeecC
Q 016458 289 YQQHGENE-------------IPHVTSIAFSISGRLLFAGY------------------SNGDCYVWDTLLAKVVLNLGS 337 (389)
Q Consensus 289 ~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~ 337 (389)
........ ...-..+++++....++.+. ..+.|.-.|.++|+....+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 54211100 00113445666555555432 134577788899999888753
Q ss_pred cCCCCC-------CCeeEEEECC-CCC---eEEeeeCCCeeEEeecceecccCccc
Q 016458 338 LQNSHE-------GRITCLGLSA-DGS---ALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 338 ~~~~~~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
. .|+ ....=+.+.. +|+ .++.++.+|.+.+ .|..+|++.
T Consensus 433 ~--~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~v----lDr~tG~~l 482 (764)
T TIGR03074 433 V--HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYV----LDRRTGEPI 482 (764)
T ss_pred c--CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEE----EECCCCCEE
Confidence 1 221 1111122222 553 7899999999999 999999765
No 400
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.33 E-value=0.063 Score=43.79 Aligned_cols=152 Identities=16% Similarity=0.148 Sum_probs=88.0
Q ss_pred CeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEE-CCCCc
Q 016458 208 DVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD-IRTGH 283 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~ 283 (389)
.+.+.++++ ++..++... ....++++.... .....+. ...+..-.|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCC--cceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 555444433 333455554432 2222222 23678889999988777777666666663 33333
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe---cCCcEEEEEcc---cc--eEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTL---LA--KVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~--~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
............ ..|+.+.+||||..++... .++.|.+--+. .+ ..+.............+++++|.+++
T Consensus 100 ~~~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 100 GEPVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred ceeEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 222211111110 1599999999999877765 34677766543 22 11111111112345689999999999
Q ss_pred CeEEeeeCCCe
Q 016458 356 SALCTGSWDTN 366 (389)
Q Consensus 356 ~~l~~~~~dg~ 366 (389)
.+++.+...+.
T Consensus 178 ~L~V~~~~~~~ 188 (253)
T PF10647_consen 178 TLVVLGRSAGG 188 (253)
T ss_pred EEEEEeCCCCC
Confidence 88777666544
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.06 Score=43.49 Aligned_cols=206 Identities=14% Similarity=0.163 Sum_probs=121.9
Q ss_pred cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEE
Q 016458 155 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234 (389)
Q Consensus 155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 234 (389)
.+-...+.++.|+|+. +.|++......-.++=-..|..+..++.. .-.....+.+.. ++.+.++--.++.+.++
T Consensus 82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~----g~~DpE~Ieyig-~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLT----GFSDPETIEYIG-GNQFVIVDERDRALYLF 155 (316)
T ss_pred ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEeccc----ccCChhHeEEec-CCEEEEEehhcceEEEE
Confidence 3445569999999997 55666666666666666678888887532 234456677775 66677776678888888
Q ss_pred eCCCCCcce---------eEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCC-----CCCe
Q 016458 235 DTRVASRAV---------RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE-----IPHV 300 (389)
Q Consensus 235 d~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~i 300 (389)
.+......+ ......+.....++|+|..+.|..+-+-.-+.||.+..............+.. ...+
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 765442111 11111255678899999988898888877788877664331111111111100 1236
Q ss_pred eEEEeCCC-CCEEEEEecCCcEEEEEcccceEEEeecCcCCCC--C---CCeeEEEECCCCCeEEeeeCCCeeE
Q 016458 301 TSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH--E---GRITCLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 301 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i~ 368 (389)
+++.|++. +..++.+.+++.+.-.|.. |.++..+......| . .....++..++|. |...|.-+..+
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy 307 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFY 307 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcce
Confidence 77888864 5566777777778778764 33333332111111 1 1345667776665 34444444443
No 402
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.076 Score=42.86 Aligned_cols=280 Identities=12% Similarity=0.056 Sum_probs=149.8
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC-C-CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-C-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (389)
+-+..+.++.+ +...+..+.-++|.|+.+......+..- . +...++.. .|++..++..+.-.-+.|+..+..+
T Consensus 87 ~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP- 161 (370)
T COG5276 87 DLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP- 161 (370)
T ss_pred hhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc-
Confidence 44566677654 7777777778999999876654433221 1 33344444 5888888886767788999876522
Q ss_pred CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (389)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (389)
.+..........-..++.+- ++.+.+..|+-+.+.|+........+.. ......+.++..++ +..+++..
T Consensus 162 ---~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~---~n~g~g~~sv~vsd-nr~y~vvy 231 (370)
T COG5276 162 ---QLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGS---YNTGPGTYSVSVSD-NRAYLVVY 231 (370)
T ss_pred ---eeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEE---EecCCceEEEEecC-CeeEEEEc
Confidence 13333333334445566653 5677778889999999987644333311 12333678888876 54455443
Q ss_pred eCCCceEEEeCCCCCcceeEEeeeccceEEE-EEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEE
Q 016458 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTV-KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 304 (389)
Q Consensus 226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 304 (389)
+--+.+-|......+...-.-....+.++ .+.-.+++......+.-+.+-|+.+............. ...-..+.
T Consensus 232 --~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~--g~~a~gi~ 307 (370)
T COG5276 232 --DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTA--GYQAAGIR 307 (370)
T ss_pred --ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCC--CccccceE
Confidence 34577778776532221111112222222 23335667777777777777777654322211110000 00011222
Q ss_pred eCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 305 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
. .+.++..+..+ ...+-+....+..... .+....+.+.+.+-+.+.+.+...++.+.| |+..
T Consensus 308 a--y~~y~yiadkn-~g~vV~~s~~s~m~~~----~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i----~~~~ 369 (370)
T COG5276 308 A--YGNYNYIADKN-TGAVVDASPPSMMDKR----PGRPTIGQSCDVSVDTQIIYSTDYNGGLSI----IEYL 369 (370)
T ss_pred E--ecCeeEeccCC-ceEEEeCCChhhcccc----cCcceEeeecceEEEeeEEEEeecCCCEEE----EEec
Confidence 2 24444444433 3444444333222221 122222333334445568888888998888 8753
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.19 E-value=0.0018 Score=36.57 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=28.8
Q ss_pred CeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (389)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (389)
.|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 5899999999999999999999999998 5544
No 404
>PHA03098 kelch-like protein; Provisional
Probab=97.12 E-value=0.051 Score=50.05 Aligned_cols=188 Identities=8% Similarity=0.054 Sum_probs=87.9
Q ss_pred CCCeEEEEecCC------cEEEEeCCCCCeeEEEeeC--CCcEEEEEECCCCcEEEEecCC-----CcEEEEeCCCCCCC
Q 016458 78 ERNRIVSASQDG------RLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDK 144 (389)
Q Consensus 78 ~~~~l~~~~~dg------~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~ 144 (389)
++..++.|+.++ .+..||..+.+-...-..+ ......+. -++..++.||.+ ..+..||..+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-- 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK-- 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc--
Confidence 445666666432 4677787665442211111 11122222 267777888765 346677776533
Q ss_pred CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (389)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (389)
+.....+...... .+++. -+ +.+++.||.+ ..+..||+.+.+-...-... .. ..-.+++.. +
T Consensus 370 ---W~~~~~lp~~r~~-~~~~~-~~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~--r~~~~~~~~--~ 437 (534)
T PHA03098 370 ---WREEPPLIFPRYN-PCVVN-VN-NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--IS--HYGGCAIYH--D 437 (534)
T ss_pred ---eeeCCCcCcCCcc-ceEEE-EC-CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--cc--ccCceEEEE--C
Confidence 1111111111111 11222 23 3667777632 46888998876544322110 11 111223333 5
Q ss_pred CcEEEEeeCCC--------ceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCEEEEEecC-----CeEEEEECCCCc
Q 016458 219 SRMFVSGSCDS--------TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGH 283 (389)
Q Consensus 219 ~~~l~~~~~dg--------~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 283 (389)
+.+++.|+.++ .+.+||..+.. ..+..+.........+.+ ++++++.|+.+ +.+.+||..+.+
T Consensus 438 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 438 GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 66777776432 37888887541 111111101111112222 66677777654 467778776543
No 405
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.10 E-value=0.11 Score=41.92 Aligned_cols=199 Identities=12% Similarity=0.060 Sum_probs=116.3
Q ss_pred ceeeeecccccC-cEEEEEEcCCCCeEEEEecCC--cEEEEeCCCCCeeEEEeeCCC-cEEEEEECCCCcEEEEecCCCc
Q 016458 57 LVCCRTLQGHAG-KVYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCA-WVMTCAFSPTGQSVACGGLDSV 132 (389)
Q Consensus 57 ~~~~~~l~~h~~-~v~~~~~~~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~ 132 (389)
...+.++..... -...+.|..++.++-+.+.-| .|+.+|+.+++.......+.. .--.++.. +++.....-.++.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 455666554333 355788877887777777665 799999999998877766542 12223333 3455555667899
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
..+||..+-+ ....+. ..+.=+.++ .++ ..|+.+.....|.++|..+.+....+........-..++.+
T Consensus 112 ~f~yd~~tl~-------~~~~~~-y~~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 112 GFVYDPNTLK-------KIGTFP-YPGEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp EEEEETTTTE-------EEEEEE--SSS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred EEEEccccce-------EEEEEe-cCCcceEEE--cCC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence 9999998633 333332 234555666 445 45666677789999999988777766433222223456667
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---------------eccceEEEEEecCCCEEEEEec
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---------------HEGDVNTVKFFPDGNRFGTGSD 270 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~ 270 (389)
.+. ++.+.+=.=....|...|..++ .....+.. ...-.+.|++.|..+.|.+.+.
T Consensus 181 E~i--~G~IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 181 EYI--NGKIYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEE--TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEE--cCEEEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 776 5555554445566777777766 44433321 1245789999997776665554
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.07 E-value=0.093 Score=40.86 Aligned_cols=208 Identities=14% Similarity=0.118 Sum_probs=110.1
Q ss_pred CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC--cEEEE-ecCCCcEEEEeCCCCCCCCCCCcceeee--
Q 016458 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG--QSVAC-GGLDSVCSIFNLNSPTDKDGNLPVSRML-- 154 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~-- 154 (389)
.++.+--..|.|.-||+...+. ........+...+.+--.+ +.+++ ++..-.|--||..... ..+..++
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v-~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~-----a~v~~t~~e 101 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKV-YRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSES-----AKVYRTLFE 101 (310)
T ss_pred eEEEEEeccCceehhhhhhhhe-EEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccce-----eeeeeeccc
Confidence 3555555567777788876443 2223332323344432222 22333 2333334445533211 0011111
Q ss_pred ---cccccceEEEEEeeCCCcEEEEeeC----------CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458 155 ---SGHKGYVSCCQYVPDEDTHLITSSG----------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (389)
Q Consensus 155 ---~~~~~~v~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (389)
...+.+.++-..+|+| ++ +.|.. .|.++.|-.... . ..+ ...-.--+.++|+.+...+
T Consensus 102 v~~d~kknR~NDgkvdP~G-ry-y~GtMad~~~~le~~~g~Ly~~~~~h~-v-~~i-----~~~v~IsNgl~Wd~d~K~f 172 (310)
T KOG4499|consen 102 VQPDRKKNRLNDGKVDPDG-RY-YGGTMADFGDDLEPIGGELYSWLAGHQ-V-ELI-----WNCVGISNGLAWDSDAKKF 172 (310)
T ss_pred cCchHHhcccccCccCCCC-ce-eeeeeccccccccccccEEEEeccCCC-c-eee-----ehhccCCccccccccCcEE
Confidence 0113455666778887 44 44432 244555543221 1 111 1222334567888755556
Q ss_pred EEEeeCCCceEEEeCC--CCC----cceeEEee---ecc-ceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeecc
Q 016458 222 FVSGSCDSTARLWDTR--VAS----RAVRTFHG---HEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (389)
Q Consensus 222 l~~~~~dg~i~i~d~~--~~~----~~~~~~~~---~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 291 (389)
.++-+.+-.|.-||.. ++. +.+..++. ... ..-.++...+|++.++.-..|+|..+|..+++.+..+..+
T Consensus 173 Y~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 173 YYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred EEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC
Confidence 6677777788778733 221 22222221 111 1234555668898888889999999999999999999876
Q ss_pred CCCCCCCCeeEEEeCC
Q 016458 292 HGENEIPHVTSIAFSI 307 (389)
Q Consensus 292 ~~~~~~~~i~~~~~~~ 307 (389)
.. .++++||--
T Consensus 253 t~-----qitsccFgG 263 (310)
T KOG4499|consen 253 TP-----QITSCCFGG 263 (310)
T ss_pred CC-----ceEEEEecC
Confidence 54 399999964
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.00 E-value=0.32 Score=45.89 Aligned_cols=81 Identities=23% Similarity=0.306 Sum_probs=54.1
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCC--C---CCC--CCCcceee-------ecccccceEEEEEeeCC--CcE
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP--T---DKD--GNLPVSRM-------LSGHKGYVSCCQYVPDE--DTH 173 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--~---~~~--~~~~~~~~-------~~~~~~~v~~~~~~~~~--~~~ 173 (389)
-.|..+.++|+|.+++..|..|.+ |-.+... . ... ....+... ...+...|..+.|+|.+ +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 358899999999999999887654 4444321 0 000 11111111 12345688999999974 478
Q ss_pred EEEeeCCCeEEEEeCCCC
Q 016458 174 LITSSGDQTCVLWDITTG 191 (389)
Q Consensus 174 l~~~~~dg~i~iwd~~~~ 191 (389)
|+.-+.|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 899999999999999764
No 408
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.099 Score=39.94 Aligned_cols=180 Identities=14% Similarity=0.099 Sum_probs=102.3
Q ss_pred cEEEEeeC--CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee
Q 016458 172 THLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 249 (389)
Q Consensus 172 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 249 (389)
.++.+.+. ...|++||+.+++.+..............++.+ ...+..-.-.+|.-..+|.++. +.+..+. .
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~-~~lg~~~-y 129 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTL-EELGRFS-Y 129 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHh-hhhcccc-c
Confidence 56666654 457999999999887765321101111222221 2333344456788889998876 5554443 2
Q ss_pred ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (389)
++.=..++. |++.|+.+....+++.-|..+..................++.+.|- +|...|-.-.+..|...|..+|
T Consensus 130 ~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 130 EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 333345544 5666777766667888777665544444332222222234445553 5655555555556666777777
Q ss_pred eEEEeecC--------cCCCCCCCeeEEEECCCC-CeEEee
Q 016458 330 KVVLNLGS--------LQNSHEGRITCLGLSADG-SALCTG 361 (389)
Q Consensus 330 ~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~~~ 361 (389)
+....+.. ....|....+.+++.|++ ++++||
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 66554421 113455678899999977 555555
No 409
>PHA03098 kelch-like protein; Provisional
Probab=96.95 E-value=0.075 Score=48.97 Aligned_cols=187 Identities=13% Similarity=0.031 Sum_probs=88.8
Q ss_pred cEEEEeeCCC------eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-----CceEEEeCCCCC
Q 016458 172 THLITSSGDQ------TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVAS 240 (389)
Q Consensus 172 ~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 240 (389)
.+++.|+.++ .+..||..+......-.. .....-.+++.. ++.+++.|+.+ ..+..||..+..
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~----~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL----IYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC----CcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 5667776542 577888887765332211 111111223322 56788888765 346778876541
Q ss_pred cceeEEeeeccc--eEEEEEecCCCEEEEEecC------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458 241 RAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (389)
Q Consensus 241 ~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (389)
.........+ -.+++ .-++++.+.||.+ ..+..||..+.+-...-..... . . -.++ ...++..+
T Consensus 370 --W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~--r-~-~~~~-~~~~~~iy 441 (534)
T PHA03098 370 --WREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS--H-Y-GGCA-IYHDGKIY 441 (534)
T ss_pred --eeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc--c-c-CceE-EEECCEEE
Confidence 1111111011 11122 2256677777732 3588899876543221111110 0 0 1122 22356666
Q ss_pred EEEecCC--------cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC-----CeeEEeecceecccC
Q 016458 313 FAGYSNG--------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKVNLGFWRVQEG 379 (389)
Q Consensus 313 ~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~W~~~~~ 379 (389)
+.|+.++ .+.+||..+.+-...- ..... ......+.+ +++.++.||.+ ..+.+ +|..+.
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~----yd~~~~ 513 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELS-SLNFP-RINASLCIF--NNKIYVVGGDKYEYYINEIEV----YDDKTN 513 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCC-CCCcc-cccceEEEE--CCEEEEEcCCcCCcccceeEE----EeCCCC
Confidence 6665432 3888898765433221 11011 111122222 67777777765 34566 666655
Q ss_pred c
Q 016458 380 A 380 (389)
Q Consensus 380 ~ 380 (389)
+
T Consensus 514 ~ 514 (534)
T PHA03098 514 T 514 (534)
T ss_pred E
Confidence 3
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.93 E-value=0.14 Score=45.63 Aligned_cols=121 Identities=11% Similarity=0.094 Sum_probs=74.9
Q ss_pred cceEEEEEeeCC---CcEEEEeeCCCeEEEEeCCC-----CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCc
Q 016458 159 GYVSCCQYVPDE---DTHLITSSGDQTCVLWDITT-----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230 (389)
Q Consensus 159 ~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (389)
..|..+.|.|-+ ...+++......|.+|.+.- ++.......++.....--...+.|+| ....|++-+....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCce
Confidence 458889998852 12466677788999998862 22222211111122222345678999 6667766665555
Q ss_pred eEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC-CeEEEEECC
Q 016458 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GTCRLFDIR 280 (389)
Q Consensus 231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~ 280 (389)
-.+++++.....++.--...+-|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 55666665544444333456789999999999988766433 346788844
No 411
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.019 Score=54.60 Aligned_cols=152 Identities=13% Similarity=0.070 Sum_probs=94.3
Q ss_pred ceEEEEEeeCCCcE-EEEeeCCCeEEEEeCCCCeeEEEecCc------ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceE
Q 016458 160 YVSCCQYVPDEDTH-LITSSGDQTCVLWDITTGLRTSVFGGE------FQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232 (389)
Q Consensus 160 ~v~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (389)
++..+...+|+.-. ++..+.+-.|..||++.-......... ..........++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44455555654222 333334457889998764322211000 00123344667888886566677788899999
Q ss_pred EEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (389)
Q Consensus 233 i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (389)
+..+......+..+ .-....++++|+|.|+.++.|-..|++.-|... .+....+...... ....|.+++|-....++
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~-e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE-ENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC-CCcceeEEEEecceeEE
Confidence 98877553333332 245568999999999999999999999999754 3333333332222 23568999998766666
Q ss_pred EE
Q 016458 313 FA 314 (389)
Q Consensus 313 ~~ 314 (389)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 54
No 412
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.18 Score=46.25 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=100.4
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 209 (389)
--.|+||+..... +....-.| +.+..+.|+.+ ..|++...+|++++|++...... ...... ......|
T Consensus 63 ~~~I~If~~sG~l-------L~~~~w~~-~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge~ie-~~svg~-e~~~~~I 130 (829)
T KOG2280|consen 63 RPYIRIFNISGQL-------LGRILWKH-GELIGMGWSDD--EELICVQKDGTVHVYGLLGEFIE-SNSVGF-ESQMSDI 130 (829)
T ss_pred ceeEEEEeccccc-------hHHHHhcC-CCeeeecccCC--ceEEEEeccceEEEeecchhhhc-cccccc-ccccCce
Confidence 3458888876522 22222223 37888999986 46888999999999998643322 211100 2233345
Q ss_pred eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---eccceEEEEEecCCC---EEEEEe-cCCeEEEEECCCC
Q 016458 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGN---RFGTGS-DDGTCRLFDIRTG 282 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~---~l~~~~-~dg~i~i~d~~~~ 282 (389)
..+.+.. +| +++-..+|.+.+-.-... .....+.. ...+-.|-...+++. .++-.. ..+ ..++-....
T Consensus 131 ~ec~~f~-~G--Vavlt~~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~ 205 (829)
T KOG2280|consen 131 VECRFFH-NG--VAVLTVSGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES 205 (829)
T ss_pred eEEEEec-Cc--eEEEecCCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc
Confidence 5555553 44 333334455554432211 12222211 111112222222211 111111 010 011111111
Q ss_pred c-eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 283 H-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 283 ~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
. ....+... ...+..+..||++++|+.=+..|.|.+-+....+....+.. ..| .+...++|..+.
T Consensus 206 ~~q~~~~~~~-----~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~--~~~-~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 206 RVQLHALSWP-----NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC--TDH-DPPKQMAWCGND 271 (829)
T ss_pred cccccccCCC-----CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC--CCC-CchHhceeecCC
Confidence 1 11111111 12488899999999999999999999999888877777642 122 233367776544
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.88 E-value=0.098 Score=46.53 Aligned_cols=160 Identities=9% Similarity=0.090 Sum_probs=92.6
Q ss_pred CCeeEEEeeCCCCcEEEEee--CCCceEEEeCCCCCcceeEEeeeccceEEEEEecC----CCEEEEEecCCeEEEEECC
Q 016458 207 ADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----GNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~ 280 (389)
.++..++|.. +...+++.- .+|.+++=|. ..+.+ -..|..++|.|- ...|++.-....|.+|.+.
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds----~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDS----KVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCCc----cEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 4688899984 444454432 3444443332 22222 234889999983 3345555667799999875
Q ss_pred C-----CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 281 T-----GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 281 ~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
. .+.+..........-.---..+.|+|....|++-+....-.++++.......... -...+.|.|.+|.+||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD---i~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD---IKTSGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe---ccCCceEEEEEecCcC
Confidence 2 2222222111111111113567899999988887666555566665433222221 2456789999999999
Q ss_pred CeEEeeeCC-CeeEEeecceecccCccc
Q 016458 356 SALCTGSWD-TNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 356 ~~l~~~~~d-g~i~i~~~~W~~~~~~~~ 382 (389)
+.|+.+-.. =.-+| ||-....+.
T Consensus 168 ~RLVVAvGSsLHSyi----Wd~~qKtL~ 191 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYI----WDSAQKTLH 191 (671)
T ss_pred CEEEEEeCCeEEEEE----ecCchhhhh
Confidence 988776544 23455 986655443
No 414
>PHA02790 Kelch-like protein; Provisional
Probab=96.87 E-value=0.16 Score=46.04 Aligned_cols=190 Identities=9% Similarity=0.023 Sum_probs=92.3
Q ss_pred cEEEEeeCCC-----eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC--CceEEEeCCCCCccee
Q 016458 172 THLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLWDTRVASRAVR 244 (389)
Q Consensus 172 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~ 244 (389)
.+++.||.++ .+..||..++.....-+. .....-.+++.. ++.+.+.|+.+ ..+..||.... ...
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m----~~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n--~W~ 344 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM----NSPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDA--AWV 344 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC----CchhhcceEEEE--CCEEEEECCcCCCCceEEEECCCC--eEE
Confidence 5667777543 577788887654443211 111111222222 67787888764 35777876543 111
Q ss_pred EEeeeccceEE-EEEecCCCEEEEEecCC---eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc
Q 016458 245 TFHGHEGDVNT-VKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD 320 (389)
Q Consensus 245 ~~~~~~~~i~~-~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 320 (389)
....-..+... ....-+|++.+.||.++ .+..||.++.+-...-...... .....+ .-+++..+.| |.
T Consensus 345 ~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r---~~~~~~--~~~~~IYv~G---G~ 416 (480)
T PHA02790 345 NMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH---YKSCAL--VFGRRLFLVG---RN 416 (480)
T ss_pred ECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc---ccceEE--EECCEEEEEC---Cc
Confidence 11111111111 11122677777777553 4678887765432211111100 011122 2356555655 45
Q ss_pred EEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC-----CeeEEeecceecccCcccCcc
Q 016458 321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKVNLGFWRVQEGALSPWG 385 (389)
Q Consensus 321 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~W~~~~~~~~~~~ 385 (389)
+.+||..+.+-... ....... .....+. -+++..+.||.+ ..+.. +|..+++-..|-
T Consensus 417 ~e~ydp~~~~W~~~-~~m~~~r-~~~~~~v--~~~~IYviGG~~~~~~~~~ve~----Yd~~~~~W~~~~ 478 (480)
T PHA02790 417 AEFYCESSNTWTLI-DDPIYPR-DNPELII--VDNKLLLIGGFYRGSYIDTIEV----YNNRTYSWNIWD 478 (480)
T ss_pred eEEecCCCCcEeEc-CCCCCCc-cccEEEE--ECCEEEEECCcCCCcccceEEE----EECCCCeEEecC
Confidence 77888876543322 1111111 1122222 267788888765 34666 888877766553
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=96.78 E-value=0.22 Score=45.12 Aligned_cols=186 Identities=9% Similarity=-0.012 Sum_probs=84.6
Q ss_pred CCCeEEEEecCC-----cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC--cEEEEeCCCCCCCCCCCcc
Q 016458 78 ERNRIVSASQDG-----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VCSIFNLNSPTDKDGNLPV 150 (389)
Q Consensus 78 ~~~~l~~~~~dg-----~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~ 150 (389)
++..+++|+.++ ++..||..+..-......+..........-++...+.||.++ .+..|+...+. +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~-----W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAA-----WVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCe-----EEE
Confidence 345667777543 466778766543222111111111111123677778887643 56777765422 111
Q ss_pred eeeecccccceEEEEEeeCCCcEEEEeeCCC---eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (389)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (389)
...+....... +++ .-++ .+.+.||.++ .+..||..+..-...-+. .....-.+++.. ++.+.+.|
T Consensus 346 ~~~l~~~r~~~-~~~-~~~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m----~~~r~~~~~~~~--~~~IYv~G-- 414 (480)
T PHA02790 346 MPSLLKPRCNP-AVA-SINN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPST----YYPHYKSCALVF--GRRLFLVG-- 414 (480)
T ss_pred CCCCCCCCccc-EEE-EECC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCC----CCccccceEEEE--CCEEEEEC--
Confidence 11111111111 122 2233 6777777553 477889877655433211 111111223222 56666766
Q ss_pred CCceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCEEEEEecC-----CeEEEEECCCC
Q 016458 228 DSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTG 282 (389)
Q Consensus 228 dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 282 (389)
|.+.+||.++.. ..+..+....... +++. -++++.++||.+ ..+..||..+.
T Consensus 415 -G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 415 -RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 357788886541 1111111111112 2222 266777777754 24556665543
No 416
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.00058 Score=58.30 Aligned_cols=150 Identities=12% Similarity=0.168 Sum_probs=103.5
Q ss_pred EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (389)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 191 (389)
.....|-+.+..++.++.+..+..||-.... ......++....++|..+++..++.+-..+.+.+||+.+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~---------~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV---------ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce---------ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence 3455677877779999999999999866421 1112234566778898888888888999999999999875
Q ss_pred eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC
Q 016458 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 271 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 271 (389)
.....- .+....-.-+.|++ ....++.+...|.+.+++.... +.....-.|...++++++.+.+ +.+.++.|
T Consensus 108 ytqqLE-----~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~lEd-~vil~dcd 179 (615)
T KOG2247|consen 108 YTQQLE-----SGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTLED-YVILCDCD 179 (615)
T ss_pred hHHHHh-----ccCcchHHHHhhcc-CCccccccccccceEEEeccch-hhhhhhcccccceeEEEecccc-eeeecCcH
Confidence 332211 11111122267887 7777888889999999998876 4444444488889999999876 45556666
Q ss_pred CeEEEEE
Q 016458 272 GTCRLFD 278 (389)
Q Consensus 272 g~i~i~d 278 (389)
..+.+-.
T Consensus 180 ~~L~v~~ 186 (615)
T KOG2247|consen 180 NTLSVTT 186 (615)
T ss_pred HHHHHhh
Confidence 5554443
No 417
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.64 E-value=0.32 Score=40.59 Aligned_cols=277 Identities=11% Similarity=0.058 Sum_probs=124.9
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee-EEEe--eC---CCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIK--LP---CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~--~~---~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (389)
..++.+|.|..+..-+++|. .+.| +...++-.. .... .. .-...++.|..+ ..+++| ..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCC
Confidence 44799999996666666654 4543 444333221 1111 11 123667777543 444444 444 33333333
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (389)
+. .+.....-..-.+....+....++ ....++..|.|..=. ..+..-.... ......+..+..++ ++.
T Consensus 90 G~----tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~~~~G~iy~T~-DgG~tW~~~~----~~~~gs~~~~~r~~-dG~ 157 (302)
T PF14870_consen 90 GK----TWERVPLSSKLPGSPFGITALGDG--SAELAGDRGAIYRTT-DGGKTWQAVV----SETSGSINDITRSS-DGR 157 (302)
T ss_dssp TS----S-EE----TT-SS-EEEEEEEETT--EEEEEETT--EEEES-STTSSEEEEE-----S----EEEEEE-T-TS-
T ss_pred CC----CcEEeecCCCCCCCeeEEEEcCCC--cEEEEcCCCcEEEeC-CCCCCeeEcc----cCCcceeEeEEECC-CCc
Confidence 32 121111111122333444554543 344445555543322 2333222221 34456788888887 888
Q ss_pred EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeecc--CCCCCCC
Q 016458 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIP 298 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~ 298 (389)
+++++.....+.-||.-.. .-...-......|..+.|.|++.+.+.+ ..|.|++=+... ....+... .......
T Consensus 158 ~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 158 YVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEPIIPIKTNGY 233 (302)
T ss_dssp EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---B-TTSS--S
T ss_pred EEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--CccccccccCCcccCce
Confidence 8888766555667775432 1111122235679999999998766644 888888877222 22222221 1112223
Q ss_pred CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.+..++|.+++...++|+. |. .+.....|+.-...... ..-...++.|.|.++.+- .+.+.+|.+--
T Consensus 234 ~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~~~~~~-~~~~~n~~~i~f~~~~~g-f~lG~~G~ll~ 300 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQKDRVG-ENVPSNLYRIVFVNPDKG-FVLGQDGVLLR 300 (302)
T ss_dssp -EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE-GGG-TTSSS---EEEEEETTEE-EEE-STTEEEE
T ss_pred eeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccceECccc-cCCCCceEEEEEcCCCce-EEECCCcEEEE
Confidence 4889999998877776654 43 34455555554443211 234556888888765444 44566777654
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.037 Score=52.81 Aligned_cols=150 Identities=9% Similarity=-0.037 Sum_probs=94.0
Q ss_pred cEEEEEECCCCcEEEEec--CCCcEEEEeCCCCCCCC----CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458 111 WVMTCAFSPTGQSVACGG--LDSVCSIFNLNSPTDKD----GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 184 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 184 (389)
++..+...+|+...++.. .+-.|..||+..-.... ..+..............++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455566666766555443 33478899988633111 011111122222345678889987656677888899999
Q ss_pred EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee----eccceEEEEEec
Q 016458 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKFFP 260 (389)
Q Consensus 185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~ 260 (389)
+..+........- .......++++|+| .+..++.|...|++.-|...-. ....+.+ ....|.+|+|-.
T Consensus 182 V~~~~~~~~~v~s-----~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~le--ik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTS-----FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLE--IKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhcc-----cCcccceeeEEecc-ccceeeEecCCCeEEEeecccc--eeecccCCCcCCCcceeEEEEec
Confidence 8876543332221 24556789999999 8899999999999999876522 1112111 145689999987
Q ss_pred CCCEEEEE
Q 016458 261 DGNRFGTG 268 (389)
Q Consensus 261 ~~~~l~~~ 268 (389)
...++++-
T Consensus 254 t~eflvvy 261 (1405)
T KOG3630|consen 254 TQEFLVVY 261 (1405)
T ss_pred ceeEEEEe
Confidence 76666654
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.61 E-value=0.7 Score=44.14 Aligned_cols=164 Identities=15% Similarity=0.160 Sum_probs=92.8
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeEEEecCccc----C---CCCCCeeEEEeeCC-CCcEEEEeeC----------CCceEE
Q 016458 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQ----S---GHTADVLSVSISGS-NSRMFVSGSC----------DSTARL 233 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~---~~~~~v~~~~~~~~-~~~~l~~~~~----------dg~i~i 233 (389)
..++.++.|+.|.-.|..+++....+...-. . .....-..+.-.|- .++.+++|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 4688889999999999999998877632100 0 00000000111110 1235555542 688999
Q ss_pred EeCCCCCcceeEEee-e--------cc--------ce-EEEEEecCCCEEEEEe------------------cCCeEEEE
Q 016458 234 WDTRVASRAVRTFHG-H--------EG--------DV-NTVKFFPDGNRFGTGS------------------DDGTCRLF 277 (389)
Q Consensus 234 ~d~~~~~~~~~~~~~-~--------~~--------~i-~~~~~~~~~~~l~~~~------------------~dg~i~i~ 277 (389)
+|.+++ +.+-.+.. . .+ .+ ...+++|+..+++.+. ..+.|.-.
T Consensus 341 ~Da~TG-kl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 341 FDVNTG-ALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EECCCC-cEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 999988 43333321 0 00 01 2344555444444322 23567778
Q ss_pred ECCCCceeeEeeccCCCCCC----CCeeEEEeCC-CCC---EEEEEecCCcEEEEEcccceEEEeec
Q 016458 278 DIRTGHQLQVYYQQHGENEI----PHVTSIAFSI-SGR---LLFAGYSNGDCYVWDTLLAKVVLNLG 336 (389)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~ 336 (389)
|.++++....+...+..... ....-+.+.. +|+ .++.++.+|.++++|..+|+.+....
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 88889888777653322111 0111122322 553 88999999999999999999887653
No 420
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.58 E-value=0.32 Score=39.84 Aligned_cols=215 Identities=15% Similarity=0.128 Sum_probs=120.5
Q ss_pred ceEEEEEeeCCCcEEEEeeCCCeEEEEeCC------CC-eeEEEecCcccCCCCCCeeEEEeeCCC-----------CcE
Q 016458 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDIT------TG-LRTSVFGGEFQSGHTADVLSVSISGSN-----------SRM 221 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~ 221 (389)
.-+.|+++|.+ .+-++....+...+||.. .. .....++...........+.+.|+... ...
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 45789999987 567777778899999986 11 222333211111233457777777421 123
Q ss_pred EEEeeCCCceEEEeCCCCCc----ceeEEeee-ccc-eEEEEEec--CCCEEEEE-ecCCeEEEEECCCCceee--Eeec
Q 016458 222 FVSGSCDSTARLWDTRVASR----AVRTFHGH-EGD-VNTVKFFP--DGNRFGTG-SDDGTCRLFDIRTGHQLQ--VYYQ 290 (389)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~~----~~~~~~~~-~~~-i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~--~~~~ 290 (389)
++.+++||+|.-|....... ....+... .+. ...+++.. .+.+|+.+ -..++|.+||-.-.+... .+..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67788999999998643322 11222211 122 34556554 35566554 468899999854322210 1111
Q ss_pred cCCCCCCCC-----------eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC------
Q 016458 291 QHGENEIPH-----------VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA------ 353 (389)
Q Consensus 291 ~~~~~~~~~-----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~------ 353 (389)
..-+....+ |+-..-.++++.=+.|-.-|.|-+||+ .+..++.+.. .+.-.....|+..|
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as--~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVAS--SGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEecc--CCcccCCceeeeChhhhCCC
Confidence 100100011 111111222222233444578999997 5666666632 44555667777765
Q ss_pred CCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 354 DGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 354 ~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
.+.+|+---.||+|.. +|..+|+..
T Consensus 260 sg~lLVGNFGDG~Ina----FD~~sG~~~ 284 (336)
T TIGR03118 260 SGALLVGNFGDGTINA----YDPQSGAQL 284 (336)
T ss_pred CCCeEEeecCCceeEE----ecCCCCcee
Confidence 5678887778999999 999888744
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.55 E-value=0.37 Score=41.97 Aligned_cols=149 Identities=12% Similarity=0.132 Sum_probs=78.3
Q ss_pred CCeeEEEeeCCCCcEEEEee-----------CCC-ceEEEeCCCCC-c--ceeEEeeeccceEEEEEecCCCEEEEEecC
Q 016458 207 ADVLSVSISGSNSRMFVSGS-----------CDS-TARLWDTRVAS-R--AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 271 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 271 (389)
.....++|.+ +++++++-. ..+ .|.+++-.... . ....+.........+++.+++ |++++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4567788887 677766542 223 67776544321 1 123333333456889999888 4444444
Q ss_pred CeEEEE-ECCCC-----ceeeEeeccCCC--CCCCCeeEEEeCCCCCEEEEEecC-------------------CcEEEE
Q 016458 272 GTCRLF-DIRTG-----HQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFAGYSN-------------------GDCYVW 324 (389)
Q Consensus 272 g~i~i~-d~~~~-----~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~i~ 324 (389)
.|..| |.... +....+...... ........++|.|||.+.++-+.. |.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 34444 44321 111111111111 012347789999999865543321 345555
Q ss_pred EcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458 325 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (389)
Q Consensus 325 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 364 (389)
+...++.. .+. .++ .....++|+++|+++++-..+
T Consensus 170 ~pdg~~~e-~~a---~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDGGKLR-VVA---HGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCCCeEE-EEe---cCc-CCCccceECCCCCEEEEccCC
Confidence 55544432 221 232 345689999999887765433
No 422
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.53 E-value=0.54 Score=41.92 Aligned_cols=275 Identities=13% Similarity=0.068 Sum_probs=139.3
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (389)
..+|.++.++..| .+..|+.|| +..||..+++.++...... .+|..+.-+-.+. |.+|+.+| |.+.+.......
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~s- 238 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRAS- 238 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccc-
Confidence 4468889998887 667788887 6778888887776655544 5566655554554 66677666 566665541100
Q ss_pred CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (389)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (389)
..-..-..+.|..+.-..+ ..+-.|+..|..+.--.+.+-.....+ . ....+.|.++.... ++ -+-++
T Consensus 239 -----n~~~~lp~~~I~ll~qD~q--G~lWiGTenGl~r~~l~rq~Lq~~~~~-~--~l~~S~vnsL~~D~-dG-sLWv~ 306 (671)
T COG3292 239 -----NWGPMLPSGNILLLVQDAQ--GELWIGTENGLWRTRLPRQGLQIPLSK-M--HLGVSTVNSLWLDT-DG-SLWVG 306 (671)
T ss_pred -----ccCCCCcchheeeeecccC--CCEEEeecccceeEecCCCCccccccc-c--CCccccccceeecc-CC-CEeee
Confidence 0001112234444433333 356777777755433322222222111 0 12223455555543 33 34556
Q ss_pred eCCCceEEEeCCCCCcceeEEeeeccc-eEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeE
Q 016458 226 SCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 302 (389)
Q Consensus 226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~ 302 (389)
+.+|.+++-+-. . .....+....+. +..++..| .+..+-....-|.+.+-+-.++..........+. .|+.
T Consensus 307 t~~giv~~~~a~-w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~----nit~ 380 (671)
T COG3292 307 TYGGIVRYLTAD-W-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGM----NITT 380 (671)
T ss_pred ccCceEEEecch-h-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecccc----ccch
Confidence 666666554432 1 111112211111 11111122 1112222222233444444445444443332222 2677
Q ss_pred EEeCCCCCEEEEEecCCcEEEEEccc-ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 303 IAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 303 ~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
+++..+|. +-.|+...-+.-|+..+ +....... ....++|..+.=.|+++ |..|+.+|.++.
T Consensus 381 ~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~a---gl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 381 TLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDA---GLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred hhhccCCc-EEEEecccchhhhccCCccccccccc---CCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 77777554 44455554466666655 33333332 34567888888889888 888999998874
No 423
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.43 E-value=0.91 Score=43.31 Aligned_cols=117 Identities=11% Similarity=0.016 Sum_probs=66.9
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC---C---CEEEEEecCCeEEEEEC-CC
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD---G---NRFGTGSDDGTCRLFDI-RT 281 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~---~---~~l~~~~~dg~i~i~d~-~~ 281 (389)
++....+. +...++.++.++.+...++....-....-...+..|.|+.++|- . +++++|..+..+.+.-. .+
T Consensus 490 ~ti~~~~~-n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 490 ITIGVVSA-NASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred eEEEEEee-cceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 33333333 44566777777777777777653111222234567999999983 2 26888887766554433 33
Q ss_pred CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
....... ......-...|.-.+|-.|..+|.++..||.+.-|-+.
T Consensus 569 ~~~~~~~-~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 569 LILITHE-QLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred cceeeee-ccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 3222222 11111111235555666678899999999988765544
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.42 E-value=0.21 Score=45.88 Aligned_cols=113 Identities=15% Similarity=0.191 Sum_probs=71.2
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEe--cCCCEEEEEecCCeEEEEECC------
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIR------ 280 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~------ 280 (389)
+.-+.-+. -++..++.+....+.|||.+.........-...+.|..+.|. |+++.+++.|..+.|.+|.-.
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444443 444555555566899999987632222222346789999986 488999999999999998642
Q ss_pred ---CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458 281 ---TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 281 ---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
+...+..+.... ....+|.+..|-++|.+++.+ ++.+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~--~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISS--HTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeec--CCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 122333332221 122358899999999766544 346888874
No 425
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.39 E-value=0.49 Score=40.41 Aligned_cols=153 Identities=18% Similarity=0.242 Sum_probs=86.9
Q ss_pred CCCeeEEEeeCCCCcEEEEeeCCCc------eEEEeCCCCC---ccee-----EEeeecc--------ceEEEEEecCCC
Q 016458 206 TADVLSVSISGSNSRMFVSGSCDST------ARLWDTRVAS---RAVR-----TFHGHEG--------DVNTVKFFPDGN 263 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~------i~i~d~~~~~---~~~~-----~~~~~~~--------~i~~~~~~~~~~ 263 (389)
-+.+..+.+.+ ++..+++.+.+|. +..+++.... ..+. .+....+ ..-+|++.+++.
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35567788876 3344555556666 5555544310 0111 1111111 344788877888
Q ss_pred EEEEEecC------CeEEEEECCCCceeeEeeccC----------CCCCCCCeeEEEeCCCCCEEEEEec-----CC--c
Q 016458 264 RFGTGSDD------GTCRLFDIRTGHQLQVYYQQH----------GENEIPHVTSIAFSISGRLLFAGYS-----NG--D 320 (389)
Q Consensus 264 ~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~-----dg--~ 320 (389)
++++.-.+ ..|..++.. ++....+..+. .......+-+++++|+|+.|+++.. |+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88777777 789999976 66655542211 1223345889999999997666543 22 1
Q ss_pred -------EEEE--Eccc-ceEEEeecCcCCC-----CCCCeeEEEECCCCCeEEe
Q 016458 321 -------CYVW--DTLL-AKVVLNLGSLQNS-----HEGRITCLGLSADGSALCT 360 (389)
Q Consensus 321 -------i~i~--d~~~-~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~ 360 (389)
++++ |..+ +.....+...... ....|+.+.+.+++++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4454 4443 3223222211122 4568999999999987764
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.33 E-value=0.64 Score=40.52 Aligned_cols=148 Identities=11% Similarity=0.135 Sum_probs=79.0
Q ss_pred cEEEEEEcCCCCeEEEEe-----------cCC-cEEEEeCCC--CCe--eEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458 69 KVYSLDWTSERNRIVSAS-----------QDG-RLIVWNALT--SQK--THAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~-----------~dg-~v~iw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (389)
....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+.........+++.+++ |+++.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 466899999998777643 223 677776433 332 23333333456889999888 444444433
Q ss_pred EEEEeCCCCCCCCCCCc-ceeeecc----cccceEEEEEeeCCCcEEEEeeC-------------------CCeEEEEeC
Q 016458 133 CSIFNLNSPTDKDGNLP-VSRMLSG----HKGYVSCCQYVPDEDTHLITSSG-------------------DQTCVLWDI 188 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~-~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~ 188 (389)
.++.+.+.......... +...+.. +......+.|.|+| .+.++-+. .|.|..++.
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 33435443221111111 1122222 13446789999997 44443331 145666666
Q ss_pred CCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (389)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (389)
.++... .+ ...-.....++|++ .++++++-.
T Consensus 172 dg~~~e-~~-----a~G~rnp~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLR-VV-----AHGFQNPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred CCCeEE-EE-----ecCcCCCccceECC-CCCEEEEcc
Confidence 554432 22 12234467889998 777776544
No 427
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.32 E-value=0.47 Score=38.79 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=86.6
Q ss_pred ceEEEEEeeCCCcEEEEee--CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEe-C
Q 016458 160 YVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD-T 236 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d-~ 236 (389)
.+...++++++..+.+... ....+.++... ...... .....+..-.|++ ++.+.+....+...+++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~------~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPV------LTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceee------ccCCccccccccC-CCCEEEEEcCCCceEEEEec
Confidence 6788899999854444442 33445555433 332222 1223677788998 577776666666666663 2
Q ss_pred CCCCcceeEEeee-c-cceEEEEEecCCCEEEEEe---cCCeEEEEECCCCce--eeEeec--cCCCCCCCCeeEEEeCC
Q 016458 237 RVASRAVRTFHGH-E-GDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQ--LQVYYQ--QHGENEIPHVTSIAFSI 307 (389)
Q Consensus 237 ~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~--~~~~~~~~~i~~~~~~~ 307 (389)
..+.......... . ..|..+.+||||..++... .++.|.+--+..... ...+.. .........++.+.|.+
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 2221222222211 1 2799999999999988766 356777765432111 111111 11111223589999999
Q ss_pred CCCEEEEEecCCc
Q 016458 308 SGRLLFAGYSNGD 320 (389)
Q Consensus 308 ~~~~l~~~~~dg~ 320 (389)
++.+++.+...+.
T Consensus 176 ~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 176 DSTLVVLGRSAGG 188 (253)
T ss_pred CCEEEEEeCCCCC
Confidence 9988777765543
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.30 E-value=0.24 Score=45.51 Aligned_cols=128 Identities=15% Similarity=0.170 Sum_probs=78.4
Q ss_pred eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-eCCCcEEEEEEC--CCCcEEEEecCCCcEEE
Q 016458 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFS--PTGQSVACGGLDSVCSI 135 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~v 135 (389)
...++..--...+-+.-+.-++.-++-+....+.|||...+.....-. ...+.|.++.|. |+++.+++.|..+.|.+
T Consensus 21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 333444444455556555555444444455689999998887555444 245779999984 58899999999999999
Q ss_pred EeCCCCC--CCCCCCcceee--ecccc-cceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 136 FNLNSPT--DKDGNLPVSRM--LSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 136 w~~~~~~--~~~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
|.-.... .....+..... +..|+ .+|.+..|.++| .++.|+ ++.+.|+|-.
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG--TLVVGS-GNQLFVFDKW 156 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC--eEEEEe-CCEEEEECCC
Confidence 8653211 01111112222 23343 679999999987 344443 3567887743
No 429
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.21 Score=43.10 Aligned_cols=128 Identities=11% Similarity=0.118 Sum_probs=79.3
Q ss_pred CCceEEEeCCCCC--cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458 228 DSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (389)
Q Consensus 228 dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (389)
.|.+.-|-...+. -++..-....++|.++.||+|.+.|++--.+..|.+++....+........+ ......|...+|
T Consensus 42 SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W 120 (657)
T KOG2377|consen 42 SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCW 120 (657)
T ss_pred cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEE
Confidence 3445555544332 2233333456799999999999999999999999999975433333322222 222234888999
Q ss_pred CCCCCEEEEEecCCcEEEEEcccceE-EEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458 306 SISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 362 (389)
+.+ .-+|..+..| +.+|-....+. ++.. +.|...|.-..|.++.+.+.-++
T Consensus 121 ~~s-~e~A~i~~~G-~e~y~v~pekrslRlV----ks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 121 TSS-TEIAFITDQG-IEFYQVLPEKRSLRLV----KSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred ecC-eeEEEEecCC-eEEEEEchhhhhhhhh----hhcccCccEEEEccccceEeeec
Confidence 866 4555554444 66776544322 2222 56777888888888876554443
No 430
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.28 E-value=0.55 Score=39.21 Aligned_cols=237 Identities=13% Similarity=0.093 Sum_probs=105.6
Q ss_pred CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceee-ecc-cccceEEEEEeeCCCcEEEEeeCCCeEEEE
Q 016458 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-LSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (389)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 186 (389)
..++..|.|.....-+++|. .+. |+....+. ..+..... ... ..-...++.|.. +..+++ +..+. .+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG---~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~iv-G~~g~-ll~ 85 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGG---KTWQPVSLDLDNPFDYHLNSISFDG--NEGWIV-GEPGL-LLH 85 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTT---SS-EE-----S-----EEEEEEEET--TEEEEE-EETTE-EEE
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCC---ccccccccCCCccceeeEEEEEecC--CceEEE-cCCce-EEE
Confidence 35789999986666666665 443 34333322 11111111 110 122356677754 244444 44453 333
Q ss_pred eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE-EeeeccceEEEEEecCCCEE
Q 016458 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRF 265 (389)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l 265 (389)
....+..-..+... ...+.....+.... ++...++ +..|. ||-.......-.. ...-.+.+..+.-+++|.++
T Consensus 86 T~DgG~tW~~v~l~--~~lpgs~~~i~~l~-~~~~~l~-~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~v 159 (302)
T PF14870_consen 86 TTDGGKTWERVPLS--SKLPGSPFGITALG-DGSAELA-GDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYV 159 (302)
T ss_dssp ESSTTSS-EE------TT-SS-EEEEEEEE-TTEEEEE-ETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EE
T ss_pred ecCCCCCcEEeecC--CCCCCCeeEEEEcC-CCcEEEE-cCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEE
Confidence 33444443333110 12223334444443 3333333 44454 3443443333332 33445678888899999999
Q ss_pred EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE-cccceEEEeecCcCCCCCC
Q 016458 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD-TLLAKVVLNLGSLQNSHEG 344 (389)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~ 344 (389)
+++.......-||--...-...- ......|..|.|+|++...+++ ..|.|++=+ ....+....-........-
T Consensus 160 avs~~G~~~~s~~~G~~~w~~~~-----r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 160 AVSSRGNFYSSWDPGQTTWQPHN-----RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp EEETTSSEEEEE-TT-SS-EEEE-------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred EEECcccEEEEecCCCccceEEc-----cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence 88877666677874322111111 1122359999999998776655 788888877 2222222221000012334
Q ss_pred CeeEEEECCCCCeEEeeeCCCeeE
Q 016458 345 RITCLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 345 ~v~~~~~~~~~~~l~~~~~dg~i~ 368 (389)
.+..++|.+++...++|+ .|.+.
T Consensus 234 ~~ld~a~~~~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGG-SGTLL 256 (302)
T ss_dssp -EEEEEESSSS-EEEEES-TT-EE
T ss_pred eeEEEEecCCCCEEEEeC-CccEE
Confidence 589999999887777655 44444
No 431
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.14 E-value=0.28 Score=43.03 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=82.0
Q ss_pred CCcEEE-EeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC--------CEEEEEecCCeEEEEECCCCc-eeeE
Q 016458 218 NSRMFV-SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG--------NRFGTGSDDGTCRLFDIRTGH-QLQV 287 (389)
Q Consensus 218 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~-~~~~ 287 (389)
+..+++ .|.....++-.|+..+ +.+..+..|... -+.|.|.. +.|+ |-.+..|.-.|.+-.. .+..
T Consensus 478 dssli~~dg~~~~kLykmDIErG-kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERG-KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccc-eeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 444443 4555667788888877 778888777654 46777742 3344 4455555555655432 2221
Q ss_pred eeccCCCCCCCCeeEEEeC----CCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458 288 YYQQHGENEIPHVTSIAFS----ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
... .. ..+.-.|+ ....|+|+++..|.|++||--.-.....+ .+....|..+..+.+|+++++.+.
T Consensus 554 ~es-Kd-----Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal----P~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 554 VES-KD-----YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL----PGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred eee-hh-----ccccccccccccccCceEEEecCCCceeeehhhcchhhhcC----cccccceeeeEeecCCcEEEEeec
Confidence 111 11 12222233 23459999999999999996443333333 567778999999999998887775
Q ss_pred CC
Q 016458 364 DT 365 (389)
Q Consensus 364 dg 365 (389)
.-
T Consensus 624 ~y 625 (776)
T COG5167 624 NY 625 (776)
T ss_pred ce
Confidence 43
No 432
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.59 Score=38.04 Aligned_cols=198 Identities=13% Similarity=0.088 Sum_probs=113.0
Q ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 190 (389)
-+..+.++ +++...+..+.-++|.|+.++..+. ....+. ..+.-.++..+ | ++...+..|.-+.+.|+.+
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~----~~~~ln-t~gyaygv~vs--G-n~aYVadlddgfLivdvsd 157 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPT----LIGFLN-TDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcc----eecccc-CCceEEEEEec--C-CEEEEeeccCcEEEEECCC
Confidence 35556665 5667777777889999999865321 111111 12333343333 3 6777777666677888876
Q ss_pred CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc-ceEEEEEecCCCEEEEEe
Q 016458 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGS 269 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~ 269 (389)
.......... ......-..++.+ +++...+..|+-+.+.|+..+..+...-.-..+ .+.++..+++-.+++...
T Consensus 158 pssP~lagry--a~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 158 PSSPQLAGRY--ALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred CCCceeeeee--ccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc
Confidence 5433222110 2233334566665 456777788999999999987655543333333 678888877765555543
Q ss_pred cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
--+.+-|....+....+-..... ....++. +.-.+++.+....+.-+.+-|..+
T Consensus 233 --egvlivd~s~~ssp~~~gsyet~-~p~~~s~--v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 233 --EGVLIVDVSGPSSPTVFGSYETS-NPVSIST--VPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred --cceEEEecCCCCCceEeeccccC-Ccccccc--eecccceeeeeccccCceeEeccC
Confidence 35777787766654444332221 1112332 333456666666666666666654
No 433
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.04 E-value=0.34 Score=42.53 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=87.4
Q ss_pred EEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCC------CcEEEEeeCCCceEEEeCCCCCcceeEE
Q 016458 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN------SRMFVSGSCDSTARLWDTRVASRAVRTF 246 (389)
Q Consensus 173 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 246 (389)
++..|+....++-.|++.|+.+... ..+.. + -+.+.|.. ...-++|-.+..|.-.|.|..+..+...
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW-----~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEW-----DLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred EEecCCCcccceeeecccceeeeEe-----ecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3445666778888999999998888 34443 3 45666521 1123456667777777887654333222
Q ss_pred eeeccceEEEEEec----CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEE
Q 016458 247 HGHEGDVNTVKFFP----DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY 322 (389)
Q Consensus 247 ~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 322 (389)
. ....++.-.|+. ...++++++..|.|++||-- +....+..+..+. .|..+..+.+|+++++.+.. .+.
T Consensus 555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~----aIk~idvta~Gk~ilaTCk~-yll 627 (776)
T COG5167 555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGD----AIKHIDVTANGKHILATCKN-YLL 627 (776)
T ss_pred e-ehhccccccccccccccCceEEEecCCCceeeehhh-cchhhhcCccccc----ceeeeEeecCCcEEEEeecc-eEE
Confidence 1 112222222222 44589999999999999943 3333333332222 48889999999998887765 677
Q ss_pred EEEcc
Q 016458 323 VWDTL 327 (389)
Q Consensus 323 i~d~~ 327 (389)
+-|+.
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 77753
No 434
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.02 E-value=0.96 Score=39.69 Aligned_cols=268 Identities=11% Similarity=0.039 Sum_probs=141.5
Q ss_pred CCeEEEEecCCcEEEEeCCCCCe-----eEEEeeCCCcEEEEEECC-----CCcEEEEecCCCcEEEEeCCCCCC--CCC
Q 016458 79 RNRIVSASQDGRLIVWNALTSQK-----THAIKLPCAWVMTCAFSP-----TGQSVACGGLDSVCSIFNLNSPTD--KDG 146 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vw~~~~~~~--~~~ 146 (389)
...+++|+..|.++||+...... +... .-..+|..+..-. +...||+ -.-..+.||.+..... ..+
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 35899999999999999754431 1111 2235677776532 2234444 4567788888843221 111
Q ss_pred CCcceeeeccccc--ceEEEEEeeCC----CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458 147 NLPVSRMLSGHKG--YVSCCQYVPDE----DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (389)
Q Consensus 147 ~~~~~~~~~~~~~--~v~~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (389)
..........|.- ....+++-|-| ..+++.-+.||.+.+|+-+.-.....++. .--...+.+.+ ..+
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~------~llPgPl~Y~~-~tD 187 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD------FLLPGPLCYCP-RTD 187 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC------CCCCcCeEEee-cCC
Confidence 1222233333432 23333443322 36788899999999999777655555422 22233456666 667
Q ss_pred EEEEeeCCCceEEEeCCCC--------------------CcceeEEe-eeccceEE---EEEecCCCEEEEEecCCeEEE
Q 016458 221 MFVSGSCDSTARLWDTRVA--------------------SRAVRTFH-GHEGDVNT---VKFFPDGNRFGTGSDDGTCRL 276 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~--------------------~~~~~~~~-~~~~~i~~---~~~~~~~~~l~~~~~dg~i~i 276 (389)
.|++++.+..+.-|....- ++....+. .-...+.. +.++.....+++-+. ..+.+
T Consensus 188 sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~ 266 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFC 266 (418)
T ss_pred EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEE
Confidence 8888888888888864211 00000110 01122333 333323333444433 35555
Q ss_pred EECCCCceeeEeeccCCCCCCCCeeEEEeC------CC-CCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEE
Q 016458 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFS------IS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 349 (389)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 349 (389)
.+. +|............ .....|. ++ +..+++++.++.+.||. ..+..+... ....+| ++
T Consensus 267 l~~-~G~l~~~krLd~~p-----~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~----l~~~PV-al 333 (418)
T PF14727_consen 267 LKD-NGSLRFQKRLDYNP-----SCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQ----LPHVPV-AL 333 (418)
T ss_pred EcC-CCeEEEEEecCCce-----eeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecC----CCCCCE-EE
Confidence 554 34333333222111 1112121 22 12588899999999996 445555442 222233 33
Q ss_pred EE---CCCCCeEEeeeCCCeeEE
Q 016458 350 GL---SADGSALCTGSWDTNLKV 369 (389)
Q Consensus 350 ~~---~~~~~~l~~~~~dg~i~i 369 (389)
.. ..-...|++-+.+|.+.+
T Consensus 334 ~v~~~~~~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 334 SVANFNGLKGLIVSLSDEGQLSV 356 (418)
T ss_pred EecccCCCCceEEEEcCCCcEEE
Confidence 33 233457888899999988
No 435
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.00 E-value=0.93 Score=39.40 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=91.2
Q ss_pred cEEEEee-CCCeEEEEeCCCC----eeEEEecCc-cc-CCCCCCeeEEEeeCCCCcEEEEee------CCCceEEEeCCC
Q 016458 172 THLITSS-GDQTCVLWDITTG----LRTSVFGGE-FQ-SGHTADVLSVSISGSNSRMFVSGS------CDSTARLWDTRV 238 (389)
Q Consensus 172 ~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~~-~~-~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~ 238 (389)
++|+..+ .++.|+|+|+.+. +....+... .. +..-.....+..-| ++++++++- .-|.+.++|-++
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 4555554 7899999998843 444444221 00 01112233444455 677777643 234677888775
Q ss_pred CCcceeEEeeecc---ceEEEEEecCCCEEEEEec--------------------CCeEEEEECCCCceeeEeeccCCCC
Q 016458 239 ASRAVRTFHGHEG---DVNTVKFFPDGNRFGTGSD--------------------DGTCRLFDIRTGHQLQVYYQQHGEN 295 (389)
Q Consensus 239 ~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~~~ 295 (389)
. ........... .-..+-|.|..+.+++... ..++.+||+.+.+.++++......
T Consensus 167 f-~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g- 244 (461)
T PF05694_consen 167 F-EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG- 244 (461)
T ss_dssp ---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE-
T ss_pred c-cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC-
Confidence 5 44444443222 2456778887777777643 357999999999999888764321
Q ss_pred CCCCeeEEEe--CCCCCEEEEEe-cCCcEEEEEc-ccce----EEEeecCcC-------------CCCCCCeeEEEECCC
Q 016458 296 EIPHVTSIAF--SISGRLLFAGY-SNGDCYVWDT-LLAK----VVLNLGSLQ-------------NSHEGRITCLGLSAD 354 (389)
Q Consensus 296 ~~~~i~~~~~--~~~~~~l~~~~-~dg~i~i~d~-~~~~----~~~~~~~~~-------------~~~~~~v~~~~~~~~ 354 (389)
.....+.| .|+..+=++|+ ..++|..|-- ..++ .+..+.... ..-..-|+.|..|.|
T Consensus 245 --~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 245 --QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp --EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred --CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 11344444 45555544443 2334444432 3322 222221100 011345899999999
Q ss_pred CCeEEeeeC-CCeeEEeecceecccC
Q 016458 355 GSALCTGSW-DTNLKVNLGFWRVQEG 379 (389)
Q Consensus 355 ~~~l~~~~~-dg~i~i~~~~W~~~~~ 379 (389)
.++|...+. +|.++. ||+...
T Consensus 323 DrfLYvs~W~~Gdvrq----YDISDP 344 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQ----YDISDP 344 (461)
T ss_dssp S-EEEEEETTTTEEEE----EE-SST
T ss_pred CCEEEEEcccCCcEEE----EecCCC
Confidence 999987775 899999 999874
No 436
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.98 E-value=0.72 Score=37.88 Aligned_cols=234 Identities=14% Similarity=0.180 Sum_probs=128.4
Q ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecc-----cccceEEEEEeeCC-----------CcEE
Q 016458 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDE-----------DTHL 174 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~-----------~~~l 174 (389)
....|+++|.+.+-++....+...+||...........++...+.. .....+.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 3577999999988888888899999999732211111122333221 12456777776432 2346
Q ss_pred EEeeCCCeEEEEeCCCCee-----EEEecCcccCCCCCCe-eEEEee--CCCCcEEEEeeCCCceEEEeCCCCCcce-eE
Q 016458 175 ITSSGDQTCVLWDITTGLR-----TSVFGGEFQSGHTADV-LSVSIS--GSNSRMFVSGSCDSTARLWDTRVASRAV-RT 245 (389)
Q Consensus 175 ~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v-~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~ 245 (389)
+.+++||+|.-|...-... ...+. ......| ..+++. .....+.++--..++|.+||-.-....+ ..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d----~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~ 179 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVD----ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS 179 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEc----cCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Confidence 7889999999998643322 11111 1111222 334443 3233444555568899999865331110 00
Q ss_pred Eee-----eccc-----------eEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC--
Q 016458 246 FHG-----HEGD-----------VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-- 307 (389)
Q Consensus 246 ~~~-----~~~~-----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 307 (389)
+.. --.+ |+-..-.++.+.=+.|..-|.|-+||+. ++.++.+...... .....|+..|
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~L---NaPWG~a~APa~ 255 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRL---NAPWGLAIAPES 255 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcc---cCCceeeeChhh
Confidence 100 0000 1111112222223334455789999976 6677666432221 1245666654
Q ss_pred ----CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC---CCCeeEEEECC
Q 016458 308 ----SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH---EGRITCLGLSA 353 (389)
Q Consensus 308 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~v~~~~~~~ 353 (389)
.|.+|+---.||+|..||..+++.+-.+... .++ ...+..|+|..
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~-~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP-DNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeecCC-CCCeEEecCeEEeeeCC
Confidence 4667777777999999999999888777421 111 12456777765
No 437
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.93 E-value=0.62 Score=43.45 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=71.0
Q ss_pred CcEEEEeeCCCeEEEEeCCC-------C----e---eEEEecCcccCCCCCCeeEEEee--CCCCcEEEEeeCCCceEEE
Q 016458 171 DTHLITSSGDQTCVLWDITT-------G----L---RTSVFGGEFQSGHTADVLSVSIS--GSNSRMFVSGSCDSTARLW 234 (389)
Q Consensus 171 ~~~l~~~~~dg~i~iwd~~~-------~----~---~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~i~ 234 (389)
...|+.+..||.|.+|.+++ . . ......+.+.......+.+++++ . ..+++|+++....|.+|
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEEEecCCceEEEE
Confidence 46788999999999996532 0 0 00011111223345578899988 6 77889999888888888
Q ss_pred eCCCCC--cceeEEeeeccceEEEEEecCC---C---EEEEEecCCeEEEEEC
Q 016458 235 DTRVAS--RAVRTFHGHEGDVNTVKFFPDG---N---RFGTGSDDGTCRLFDI 279 (389)
Q Consensus 235 d~~~~~--~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 279 (389)
-..... .....-..+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 655421 1111112356679999998743 2 7888899999999887
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.88 E-value=0.43 Score=44.39 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=72.7
Q ss_pred eEEEEEec--CCCEEEEEecCCeEEEEECCC-------C----ce---eeEeeccCCCCCCCCeeEEEeC--CCCCEEEE
Q 016458 253 VNTVKFFP--DGNRFGTGSDDGTCRLFDIRT-------G----HQ---LQVYYQQHGENEIPHVTSIAFS--ISGRLLFA 314 (389)
Q Consensus 253 i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~-------~----~~---~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~ 314 (389)
|+.+.... +...|+.+..||.|.+|.+.+ . .. .................++++. ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 44444333 556899999999999997632 0 00 0000000111122247889988 77889999
Q ss_pred EecCCcEEEEEcccce-EEEeecCcCCCCCCCeeEEEECCCC---C---eEEeeeCCCeeEEeecceec
Q 016458 315 GYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADG---S---ALCTGSWDTNLKVNLGFWRV 376 (389)
Q Consensus 315 ~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~~~~W~~ 376 (389)
++....|.||-..... ....... ..+...|-+|+|-++. . .|++++-.|.+.+ |++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s--~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~----~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPS--HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT----FKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccc--cccccCCCeeEeecCCCCCccceEEEEEeccCcEEE----EEE
Confidence 9888888888665421 1111111 2466679999997643 2 7888889999998 666
No 439
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.68 E-value=0.083 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=26.0
Q ss_pred CcEEEEEEcCCC---CeEEEEecCCcEEEEeCCC
Q 016458 68 GKVYSLDWTSER---NRIVSASQDGRLIVWNALT 98 (389)
Q Consensus 68 ~~v~~~~~~~~~---~~l~~~~~dg~v~iw~~~~ 98 (389)
++|.++.|+|+. .+|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999999844 4888888889999999985
No 440
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=1.3 Score=38.51 Aligned_cols=120 Identities=11% Similarity=0.204 Sum_probs=79.8
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee----EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT----HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (389)
...++|.++.||+|.+.||+--.+++|.+++....+.. ...+.....|....|+.+ .-+|.....| +-+|....
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 35679999999999999999999999999998443322 223344566888999876 4455554444 67777665
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCe
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGL 192 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 192 (389)
.. ...+..+.|+..|.--.|.++..-.+++.+ ...++.=+.+.++.
T Consensus 142 ek------rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 142 EK------RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hh------hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 22 134556678888888899998643344444 34444445554443
No 441
>PRK13684 Ycf48-like protein; Provisional
Probab=95.67 E-value=1.2 Score=38.15 Aligned_cols=277 Identities=10% Similarity=0.011 Sum_probs=130.9
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC-CCeeEEEe----eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIK----LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (389)
...+.+|+|..+.+-+++|. +|.| |...+ |+.-.... .....+.++.|.++ ..+++ +..|. +|....+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCC
Confidence 55799999986666666664 4543 33322 22211111 12234677888654 33444 34444 3333322
Q ss_pred CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (389)
. ..+..........+....+.....+ . +..++..|.|..=+ ..++.-..+. ......+..+.+.| ++.+
T Consensus 118 G---~tW~~~~~~~~~~~~~~~i~~~~~~-~-~~~~g~~G~i~~S~-DgG~tW~~~~----~~~~g~~~~i~~~~-~g~~ 186 (334)
T PRK13684 118 G---KNWTRIPLSEKLPGSPYLITALGPG-T-AEMATNVGAIYRTT-DGGKNWEALV----EDAAGVVRNLRRSP-DGKY 186 (334)
T ss_pred C---CCCeEccCCcCCCCCceEEEEECCC-c-ceeeeccceEEEEC-CCCCCceeCc----CCCcceEEEEEECC-CCeE
Confidence 1 1111111000011111222222222 2 33344445443222 2233222221 23345688888887 6655
Q ss_pred EEEeeCCCceEEEeCCCCCcceeEE-eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458 222 FVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (389)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (389)
++++ ..|.+..- .+...+..... ..-...++++.+.+++..++++ ..|.+.+=....+..-.....+. ......+
T Consensus 187 v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~-~~~~~~l 262 (334)
T PRK13684 187 VAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPE-ITNGYGY 262 (334)
T ss_pred EEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCc-cccccce
Confidence 5544 45654432 11221222222 2234578899999998876665 55766532334433322221110 1112247
Q ss_pred eEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
..+.+.+++..+++| .+|.+. .....++........ ..-....+.+.|..+++.++ .+..|.|.-
T Consensus 263 ~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~-~~~~~~~~~~~~~~~~~~~~-~G~~G~il~ 327 (334)
T PRK13684 263 LDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVG-EEVPSNFYKIVFLDPEKGFV-LGQRGVLLR 327 (334)
T ss_pred eeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcC-CCCCcceEEEEEeCCCceEE-ECCCceEEE
Confidence 889999988766555 566554 444445544433110 11224577888876666554 566787766
No 442
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.62 E-value=0.08 Score=28.97 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=27.9
Q ss_pred CCeeEEEeeCCCC--cEEEEeeCCCceEEEeCCCC
Q 016458 207 ADVLSVSISGSNS--RMFVSGSCDSTARLWDTRVA 239 (389)
Q Consensus 207 ~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~ 239 (389)
+.+.++.|+|... ++|+.+-..|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3588999998666 79999999999999999953
No 443
>PRK10115 protease 2; Provisional
Probab=95.61 E-value=2.2 Score=40.70 Aligned_cols=197 Identities=13% Similarity=0.025 Sum_probs=95.6
Q ss_pred cEEEEEECCCCcEEEEecC-----CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----
Q 016458 111 WVMTCAFSPTGQSVACGGL-----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----- 180 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----- 180 (389)
.+..+.++|++++|+.+.. ...|++.|+.++.. +...+..- -..++|.++++.++++...+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~------l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW------YPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC------CCccccCc---ceEEEEeeCCCEEEEEEecCCCCCC
Confidence 3667889999998887633 23588888876431 11111111 14589999986666665432
Q ss_pred CeEEEEeCCCC--eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC---CCceEEEeCCCCCcceeEEeeeccceEE
Q 016458 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRVASRAVRTFHGHEGDVNT 255 (389)
Q Consensus 181 g~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~i~~ 255 (389)
..|..+++.++ +....+ ........-..+.+.++.+++..+. ++.+.+++..........+..+...+..
T Consensus 199 ~~v~~h~lgt~~~~d~lv~-----~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 273 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVY-----EEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY 273 (686)
T ss_pred CEEEEEECCCChhHCeEEE-----eeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE
Confidence 46888898887 333344 2222222222233325555444332 4578888854321112222223322221
Q ss_pred EEEecCCCEEEEEec----CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458 256 VKFFPDGNRFGTGSD----DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 256 ~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
-..+.. ..|...+. ...|...++........+.... ....+..+.+. .+.++++...+|.-+++-+
T Consensus 274 ~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~---~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 274 SLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPR---ENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEeCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCC---CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 111222 33333332 2234444544211122222221 11237777776 3345555666665444433
No 444
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.57 E-value=0.34 Score=44.65 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=45.6
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 66 h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (389)
....++++.-+|.+.-++.+..||+|++|++...+...... ...+-..+.|...| |+++..|..+--|.-+.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKEDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeeccC
Confidence 34457888999999999999999999999986554422111 11223344454333 45555666666665443
No 445
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=95.49 E-value=2.6 Score=40.81 Aligned_cols=250 Identities=10% Similarity=0.008 Sum_probs=121.3
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCCe-------eEEEee-CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC-
Q 016458 73 LDWTSERNRIVSASQDGRLIVWNALTSQK-------THAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD- 143 (389)
Q Consensus 73 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~- 143 (389)
-++-++...+++-+.+|.|+--+..+-.. ...+.. ....+..+........++..+..|.+.......-..
T Consensus 490 edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~ 569 (800)
T TIGR01063 490 EDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEA 569 (800)
T ss_pred hhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCC
Confidence 34456667888889999998776543211 111111 123455554555666666667778766654432110
Q ss_pred --CCCCCcc--eeeecccccceEEEEEee-CCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc-ccCCCCCCeeEEEeeCC
Q 016458 144 --KDGNLPV--SRMLSGHKGYVSCCQYVP-DEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSISGS 217 (389)
Q Consensus 144 --~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~ 217 (389)
...-.+. ...+.....-+.++.... +.+..++..+.+|.++-.++..-......... ......+.+..+....
T Consensus 570 ~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~- 648 (800)
T TIGR01063 570 SRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTS- 648 (800)
T ss_pred CcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeC-
Confidence 0000011 011222223344444322 12357899999999998877543221111000 0011234454444444
Q ss_pred CCcEEEEeeCCCceEEEeCCCCC--------cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC-------
Q 016458 218 NSRMFVSGSCDSTARLWDTRVAS--------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG------- 282 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------- 282 (389)
....++..+..|.+..+....-. .....+. ....|.++..-.++..++..+..|.++...+..-
T Consensus 649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~ 727 (800)
T TIGR01063 649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG 727 (800)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC
Confidence 33446666667877666553221 1111121 1233444444445557888888898888765432
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
+....+..... ...+..+....+...++..+.+|.+..++..
T Consensus 728 kGv~~ikl~~~---~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 728 KGVKSIKITDR---NGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred cceEEEEccCC---CCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 12222211110 0123333333344456666777877777654
No 446
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.25 E-value=0.014 Score=54.18 Aligned_cols=140 Identities=19% Similarity=0.190 Sum_probs=74.9
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC--CeeEEEecCcccCCCCC
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--GLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~ 207 (389)
.+.+++-+....- ......++..+.+-.+.|-...-..+. -.-|.+.+||+.- |+....+..........
T Consensus 110 ~~~vrvaN~~~sm------~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs 181 (1283)
T KOG1916|consen 110 ENGVRVANQEPSM------RHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGS 181 (1283)
T ss_pred hhhhhhccCcchh------HHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCC
Confidence 4556666655411 112345667788888888543222222 3347788888753 33222221111133334
Q ss_pred CeeEEEeeCC--CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEE-----------EecCCCEEEEEecCCeE
Q 016458 208 DVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK-----------FFPDGNRFGTGSDDGTC 274 (389)
Q Consensus 208 ~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~~~~~dg~i 274 (389)
.+.-+.|.|- +.-++..+..++.+++........ ..+..|...+..++ .+|||..++.++.||.+
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 4455666552 345666677788888887764422 33344665555443 45666666666666666
Q ss_pred EEEEC
Q 016458 275 RLFDI 279 (389)
Q Consensus 275 ~i~d~ 279 (389)
++|.+
T Consensus 260 ~f~Qi 264 (1283)
T KOG1916|consen 260 GFYQI 264 (1283)
T ss_pred ceeee
Confidence 66543
No 447
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=95.15 E-value=1.7 Score=36.65 Aligned_cols=241 Identities=10% Similarity=0.037 Sum_probs=112.5
Q ss_pred CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE------
Q 016458 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT------ 194 (389)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------ 194 (389)
+++|+.|+.+|...+ ++.... ....+ -.+...|+++...+..+-+++.++....++.+++..-...
T Consensus 13 ~~~lL~GTe~Gly~~-~~~~~~-----~~~~k--l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~ 84 (302)
T smart00036 13 GKWLLVGTEEGLYVL-NISDQP-----GTLEK--LIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGS 84 (302)
T ss_pred CcEEEEEeCCceEEE-EcccCC-----CCeEE--ecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCC
Confidence 368999999985544 454311 01222 2345689999999876555555666667999998433210
Q ss_pred -----EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-------eeccceEEEEEecC-
Q 016458 195 -----SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------GHEGDVNTVKFFPD- 261 (389)
Q Consensus 195 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~- 261 (389)
.... .....+........+.......++++....+|.++...........+. ....++..+..+++
T Consensus 85 ~~~~~~~~~-~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~ 163 (302)
T smart00036 85 ARLVIRKNV-LTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSF 163 (302)
T ss_pred ccccccccc-eEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccc
Confidence 0000 000233333444444432233445555667777775443211111111 11123333333332
Q ss_pred -CCEEEEEecCCeEEEEECCC--CceeeEeeccCCCCCC-CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458 262 -GNRFGTGSDDGTCRLFDIRT--GHQLQVYYQQHGENEI-PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (389)
Q Consensus 262 -~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (389)
...++.|+..+...++++.. ................ .++....+ +++.+|++- .+ ...+.|....+......
T Consensus 164 ~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc~-~~-~~v~Vn~~G~~~~r~~~- 239 (302)
T smart00036 164 ERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLCY-DE-FGVFVNLYGKRRSRNPI- 239 (302)
T ss_pred cceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEEE-Cc-EEEEEeCCCCccccceE-
Confidence 45677777653344455432 1100000000000000 23333334 344444443 33 34555544211111100
Q ss_pred cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 338 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
-.-...+.++++.. .+|+.-+ +..|.| |++.++++..
T Consensus 240 --l~w~~~p~~~~~~~--pyll~~~-~~~iev----r~l~~~~l~q 276 (302)
T smart00036 240 --LHWEFMPESFAYHS--PYLLAFH-DNGIEI----RSIKTGELLQ 276 (302)
T ss_pred --EEcCCcccEEEEEC--CEEEEEc-CCcEEE----EECCCCceEE
Confidence 12234566777763 4666655 455999 9999987643
No 448
>PRK05560 DNA gyrase subunit A; Validated
Probab=95.08 E-value=3.6 Score=40.00 Aligned_cols=264 Identities=8% Similarity=-0.021 Sum_probs=128.3
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCCe-------eEEEee-CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC---CC
Q 016458 74 DWTSERNRIVSASQDGRLIVWNALTSQK-------THAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---PT 142 (389)
Q Consensus 74 ~~~~~~~~l~~~~~dg~v~iw~~~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~~ 142 (389)
.+-++...+++-+.+|.|+--...+... ...+.. ....+..+........|+..+..|.+....... ..
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEAS 572 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCC
Confidence 4455677888899999988775543211 111111 123444444455566666667778766654432 11
Q ss_pred CCCCCCcc--eeeecccccceEEEEEeeC-CCcEEEEeeCCCeEEEEeCCCCe-------eEEEecCcccCCCCCCeeEE
Q 016458 143 DKDGNLPV--SRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL-------RTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 143 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~ 212 (389)
....-.+. ...+.....-+.++.+... ....++..+.+|.++--++..-. ....+ . ..+.+..+
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikL-----k-e~D~lv~v 646 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINL-----D-EGDELIGV 646 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeecc-----C-CCCEEEEE
Confidence 00000111 0112222333444444421 23578999999999987764322 11111 1 23445444
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCC--------cceeEEeeeccceEE-EEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVAS--------RAVRTFHGHEGDVNT-VKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
.... ....++..+..|.+..+....-. .....+.. ...|.. +.+.+++.+++..+..|.++...+..-.
T Consensus 647 ~~~~-~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~ 724 (805)
T PRK05560 647 RLTD-GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYR 724 (805)
T ss_pred EEeC-CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhh
Confidence 4444 34456666677877776654221 11122221 223333 3344444478888888988887654321
Q ss_pred -------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 284 -------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 284 -------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
....+.... ....+..+........++..+.+|.+..++...-. .. ......|..+....++
T Consensus 725 ~~~R~~kG~~~lkl~~---~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~---~~----gR~a~GVk~I~L~~~D 793 (805)
T PRK05560 725 LQGRGGKGVITIKITE---KNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEIS---IT----GRNTQGVRLIRLDEGD 793 (805)
T ss_pred ccCCCCCcEEeeeccC---CCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCC---cc----ccCCCCeeeEecCCCC
Confidence 112221100 01123333322333456666677877777754321 11 2233456666665443
No 449
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.02 E-value=2.2 Score=37.99 Aligned_cols=111 Identities=15% Similarity=0.106 Sum_probs=61.4
Q ss_pred cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeE--eeccCCCCCCCCeeEEEeCCCC------CEEEEEe------
Q 016458 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSISG------RLLFAGY------ 316 (389)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~------ 316 (389)
...+.++|.|++++|++--..|.|++++..++..... +..............|+++|+- .+|++..
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 4568899999998777665579999998655432211 1111001113458999999874 3555543
Q ss_pred ----cCCcEEEEEcccc-------eEEEe-ecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458 317 ----SNGDCYVWDTLLA-------KVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (389)
Q Consensus 317 ----~dg~i~i~d~~~~-------~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 364 (389)
....|.-|.+... +.+.. +.. ...|. -..|+|.|||.+.++.++.
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~-~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPA-GNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCC-CCCcC--CceEEECCCCcEEEEECCC
Confidence 1223444544311 11111 110 11233 4567899999877766654
No 450
>PRK10115 protease 2; Provisional
Probab=94.97 E-value=3.5 Score=39.35 Aligned_cols=242 Identities=9% Similarity=-0.000 Sum_probs=117.4
Q ss_pred cEEEEEEcCCCCeEEEEec-----CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC------CcEEEEe
Q 016458 69 KVYSLDWTSERNRIVSASQ-----DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------SVCSIFN 137 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw~ 137 (389)
.+..+.|+||+++|+.+.. ...|++-|+.++..+...-... -..++|.++++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4778899999998886533 2368888998886432221111 1458999999877665432 3577777
Q ss_pred CCCCCCCCCCCcceeeecccccceEEEEEee-CCCcEEEEee--CCCeEEEEeCC--CCeeEEEecCcccCCCCCCeeEE
Q 016458 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITSS--GDQTCVLWDIT--TGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~--~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
+.++... ....+...........+.+ ++..+++... .++.+.+++.. .+.....+. ........+
T Consensus 206 lgt~~~~-----d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~ 275 (686)
T PRK10115 206 IGTPASQ-----DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-----RRKDHEYSL 275 (686)
T ss_pred CCCChhH-----CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-----CCCCCEEEE
Confidence 7765211 1122222222222222333 5533333322 24578888843 333222221 111222222
Q ss_pred EeeCCCCcEEEEeeCC-C--ceEEEeCCCCCcceeEEeee-c-cceEEEEEecCCCEEEEEecCCeEEEEECCC-Cceee
Q 016458 213 SISGSNSRMFVSGSCD-S--TARLWDTRVASRAVRTFHGH-E-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQ 286 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~ 286 (389)
. +. .+.+++....+ . .|...++... .....+..+ . ..+..+.+. .+.++++...+|.-+++-+.. +....
T Consensus 276 ~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~ 351 (686)
T PRK10115 276 D-HY-QHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVI 351 (686)
T ss_pred E-eC-CCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceE
Confidence 2 32 33333333222 2 3444444422 223344445 2 367778877 334556666677655544432 22233
Q ss_pred EeeccCCCCCCCCeeEEEeC--CCCC-EEEEEe---cCCcEEEEEcccce
Q 016458 287 VYYQQHGENEIPHVTSIAFS--ISGR-LLFAGY---SNGDCYVWDTLLAK 330 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~--~~~~-~l~~~~---~dg~i~i~d~~~~~ 330 (389)
.+.... . ..+..+.++ +++. ++++.+ .-+.++.+|+.+++
T Consensus 352 ~l~~~~-~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 352 GIAFDD-P---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EecCCC-C---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 322111 0 012333344 4444 443332 24578888987754
No 451
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.95 E-value=0.015 Score=53.88 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=62.8
Q ss_pred eCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEee---CCCcEEEEeeCCCe
Q 016458 107 LPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP---DEDTHLITSSGDQT 182 (389)
Q Consensus 107 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~ 182 (389)
+..+.|-.+.|-. +...++ -.-|...||+++.-...-...............+.-+.|.| .. .++..+-.++.
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~-~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNK-VYICYGLKGGE 206 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccccc-ceeeeccCCCc
Confidence 3345566666632 111111 23367889998762211111112222223333444455554 33 56777788899
Q ss_pred EEEEeCCCCeeEEEecCcccCCCCCCeeEEEe-----------eCCCCcEEEEeeCCCceEEEeC
Q 016458 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSI-----------SGSNSRMFVSGSCDSTARLWDT 236 (389)
Q Consensus 183 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~~l~~~~~dg~i~i~d~ 236 (389)
+++.++.+... ..+ ..|...+..+++ +| ++..++.+..||.++.|.+
T Consensus 207 i~lL~~~ra~~-~l~-----rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLF-----RSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeEeeechHHH-HHH-----HhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeee
Confidence 99888776544 222 346665555544 44 5566666666666666544
No 452
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.88 E-value=4 Score=39.58 Aligned_cols=171 Identities=11% Similarity=0.035 Sum_probs=94.7
Q ss_pred eCCCcEEEEEEC---C----CCcEEEEecCCCcEEEEeCCCCCC------CC--CCCcceeeecc---cccceEEEEEee
Q 016458 107 LPCAWVMTCAFS---P----TGQSVACGGLDSVCSIFNLNSPTD------KD--GNLPVSRMLSG---HKGYVSCCQYVP 168 (389)
Q Consensus 107 ~~~~~v~~~~~~---~----~~~~l~~~~~dg~i~vw~~~~~~~------~~--~~~~~~~~~~~---~~~~v~~~~~~~ 168 (389)
....+|..|+|. . ..++|++- ....+.|+...-.+. .. -.......+.. -..+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 345778888887 2 22355544 455677777222111 10 11112222221 234678899999
Q ss_pred CCCcEEEEeeCCCeEEEEeCCCCee----EEEec----Ccc--cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC
Q 016458 169 DEDTHLITSSGDQTCVLWDITTGLR----TSVFG----GEF--QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238 (389)
Q Consensus 169 ~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~----~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 238 (389)
.....|+.....|...||++..... ..... ... .....+.-..+.|.+ +.+.|++++ ...+.++|++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-CCceEEEECCC
Confidence 8888999999999999999921111 11110 000 011123344788877 444555544 35789999987
Q ss_pred CCcce-eEEeeeccceEEEEEecC-CCEEEEEecCCeEEEEECCC
Q 016458 239 ASRAV-RTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRT 281 (389)
Q Consensus 239 ~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~ 281 (389)
..... .........|..+.-+|. ..+++.-+ ...|...++..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 63311 122234456888888876 22333332 35788888776
No 453
>PRK13684 Ycf48-like protein; Provisional
Probab=94.81 E-value=2.3 Score=36.47 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=62.1
Q ss_pred ccceEEEEEecCCCEEEEEecCCeEEE-EECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 250 EGDVNTVKFFPDGNRFGTGSDDGTCRL-FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
...+..+.+.|++.+++++ ..|.+.. +| ..++.-..... .....++.+.+.++++.+++| ..|.+++=....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeC----CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC
Confidence 4568889999988666555 4455443 22 12222222211 122358999999999887766 556654323444
Q ss_pred ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
+................+.++.+.+++..+ .++.+|.+..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~~ 284 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLLV 284 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEE-EEcCCCeEEE
Confidence 443332211001122457889999887654 4556676543
No 454
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.71 E-value=0.25 Score=39.17 Aligned_cols=70 Identities=30% Similarity=0.368 Sum_probs=51.0
Q ss_pred eCCCCCEEEEEecCCcEEEEEcccceEEEeec---CcCC-------CCCCCeeEEEECCCCCeEEeeeCCCeeEEeecce
Q 016458 305 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG---SLQN-------SHEGRITCLGLSADGSALCTGSWDTNLKVNLGFW 374 (389)
Q Consensus 305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W 374 (389)
+..++.+|++-+.+|.+++||+.+++.+..-. .+.. .....|..+.++.+|.-+++-+ +|..+. |
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~----y 92 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS----Y 92 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE----e
Confidence 44578899999999999999999887654431 1111 3556889999999998777655 577777 7
Q ss_pred ecccC
Q 016458 375 RVQEG 379 (389)
Q Consensus 375 ~~~~~ 379 (389)
+.+-+
T Consensus 93 ~~~L~ 97 (219)
T PF07569_consen 93 SPDLG 97 (219)
T ss_pred ccccc
Confidence 76543
No 455
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=0.68 Score=45.58 Aligned_cols=160 Identities=15% Similarity=0.219 Sum_probs=91.7
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEE--------ecCCCEEEEEecCCeEEEEECCCC
Q 016458 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF--------FPDGNRFGTGSDDGTCRLFDIRTG 282 (389)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~dg~i~i~d~~~~ 282 (389)
.+-+.|.-++..+ +.|+.+.+|+..+. .....+.+-...|..+.. -|.=+++++.+.--.|.++-+.-.
T Consensus 83 ~mGiFpeI~RaWi--TiDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 83 DMGIFPEIGRAWI--TIDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeccchhhcceEE--EeCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 3334443344443 45789999999985 555666665555655543 233344444444455666654322
Q ss_pred ceeeE---eecc-CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc--c---ce--------------EEEeecCcC
Q 016458 283 HQLQV---YYQQ-HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL--L---AK--------------VVLNLGSLQ 339 (389)
Q Consensus 283 ~~~~~---~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~---~~--------------~~~~~~~~~ 339 (389)
+.... +... .-......|+++....+|+.+++| .||.|+=.-.. . ++ .+.++....
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~ 238 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP 238 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence 11111 1000 001122348888888888877776 55544422111 1 01 011111111
Q ss_pred CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
..+..+|..++.+.....+.+-+..|+|.+ |++..
T Consensus 239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~----Y~i~~ 273 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSRNILYVLSEKGTVSA----YDIGG 273 (1311)
T ss_pred CCCCCcceeeEeccccceeeeeccCceEEE----EEccC
Confidence 356779999999999999999999999999 99987
No 456
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=94.51 E-value=4.9 Score=38.87 Aligned_cols=72 Identities=17% Similarity=-0.004 Sum_probs=50.2
Q ss_pred cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe----eccC----------CCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY----YQQH----------GENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
..|.+++...-+..++....||+|.++|-.+.+.+... .... .-.....+..++|||.+-.++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45667777777888999999999999998887555444 1100 000111344588999999898888
Q ss_pred cCCcEE
Q 016458 317 SNGDCY 322 (389)
Q Consensus 317 ~dg~i~ 322 (389)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888866
No 457
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=94.51 E-value=0.11 Score=30.66 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (389)
++++|++++..++.|+.+++..+...+..
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999887643
No 458
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=1.9 Score=42.82 Aligned_cols=233 Identities=11% Similarity=0.001 Sum_probs=105.3
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC-cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (389)
......++|+|...++|.++.+|.|+++-...-+.......... .+..+.+-...........+..+.+|......
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~--- 111 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT--- 111 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc---
Confidence 34567899999999999999999999997543322222111111 12222222222222333344455555544311
Q ss_pred CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (389)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (389)
...+...+++..-.+ .-..+.+ ..+.+++||..-........... ..+...+ -...++.........
T Consensus 112 --------~~~~~~~~~~~~~~~--~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~s~~~~~~~~~~ 178 (993)
T KOG1983|consen 112 --------GVFLKQEITSFVTDP--PPDWLIG-ENGLVKVSDVLRHQLSDLKYAGT-ESSNFVP-YESLSPTLSIEGLVI 178 (993)
T ss_pred --------eeecCCcceeccCCC--Ccchhcc-cCceeeEeeechhhhccceeccc-cccccce-eeeeccceeeecccc
Confidence 111122222222222 1222344 77888888865432221110000 0000000 000000000000000
Q ss_pred eCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (389)
Q Consensus 226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (389)
+-.-.++.+.. .. ..+..+..++.+..+..... ++.+..-+.+-+|+.........+..... ..
T Consensus 179 --~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 242 (993)
T KOG1983|consen 179 --DLDTVLISLPD--AY-LGLSLIEYESLQVLYYSPTK-ILIGFNRGLVVIKDRASKYVQSAYLPNGQ----------LE 242 (993)
T ss_pred --ccccceeeccc--cc-ccccccccccceeeeecCCC-cceeeeeeeeeehhcccccchhhcccccc----------cC
Confidence 00111111111 11 22333445555555543333 33344456666776554433333322211 12
Q ss_pred CCCCCEEEEEecCCcEEEEEcccceE
Q 016458 306 SISGRLLFAGYSNGDCYVWDTLLAKV 331 (389)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (389)
++++..++++..||.+.+||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77889999999999999999888755
No 459
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.40 E-value=1.1 Score=38.99 Aligned_cols=166 Identities=13% Similarity=0.122 Sum_probs=93.0
Q ss_pred CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee-cc----ceE-EEEEecCCCEEEEEecCCeEEEE
Q 016458 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-EG----DVN-TVKFFPDGNRFGTGSDDGTCRLF 277 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~----~i~-~~~~~~~~~~l~~~~~dg~i~i~ 277 (389)
.....+..+-..| +++.+..-+. ..+.++++.+..-..+.+... .+ .|+ .+..-..|..+.+++.||-|.-|
T Consensus 218 ~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 218 VPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 3445677777888 7777766554 678888887553222222111 11 122 12222356678889999988776
Q ss_pred -ECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458 278 -DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (389)
Q Consensus 278 -d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (389)
|++.+............-...++..+.-..+.+-+++-+.+|.+.++.....+.+..- .--..+.-+++||.+.
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-----~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-----RAYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-----hhhcCcceeeeCcccc
Confidence 5544322111100000001112333333334456777788888888876554444332 2223567789999999
Q ss_pred eEEeeeCCCeeEEeecceecccCcc
Q 016458 357 ALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 357 ~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
+|++-. .|.+++ +.+++...
T Consensus 371 ~Ll~e~-~gki~~----~~l~Nr~P 390 (733)
T COG4590 371 YLLSED-QGKIRL----AQLENRNP 390 (733)
T ss_pred hheeec-CCceEE----EEecCCCC
Confidence 988643 477888 77776543
No 460
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=1.9 Score=33.33 Aligned_cols=179 Identities=13% Similarity=0.068 Sum_probs=85.7
Q ss_pred CCCeEEEEec--CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeee
Q 016458 78 ERNRIVSASQ--DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRML 154 (389)
Q Consensus 78 ~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 154 (389)
+|.++.+.+. ...|++||+.+++.+.+.+.....+..=-...-+.++ ...-.+|.-..+|.++-+ ....+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~-------~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE-------ELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh-------hhccc
Confidence 4556666553 3479999999999887766542112111111112333 334457888888877632 11111
Q ss_pred cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEE
Q 016458 155 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234 (389)
Q Consensus 155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 234 (389)
. ..+.=+.++. ++.+ |+.+....+++.-|.++...............-..++.+.|- ++.+.+-.=.+..|...
T Consensus 128 ~-y~GeGWgLt~--d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI 201 (262)
T COG3823 128 S-YEGEGWGLTS--DDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARI 201 (262)
T ss_pred c-cCCcceeeec--CCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEE
Confidence 1 2233344443 3333 666666677888777665433332211111112223334443 23333222222233333
Q ss_pred eCCCC-----------CcceeEEeeeccceEEEEEecCCCEEEEEe
Q 016458 235 DTRVA-----------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269 (389)
Q Consensus 235 d~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 269 (389)
|..++ ...+..-..|..-.+.+++.|++..++..+
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33332 112222233455678899999775554443
No 461
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.29 E-value=5.1 Score=38.22 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=54.6
Q ss_pred cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC----------Cee--EE-Ee--cC-cccCCCCCCeeEEEeeCCC--Cc
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----------GLR--TS-VF--GG-EFQSGHTADVLSVSISGSN--SR 220 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~--~~-~~--~~-~~~~~~~~~v~~~~~~~~~--~~ 220 (389)
-.|..+..+|+| .+++..|..|...+ .+.. +.. .. .+ .. .+.......|..+.|+|.. +.
T Consensus 85 f~v~~i~~n~~g-~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTG-SLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCC-CEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 468889999998 56666666554433 3321 111 10 11 00 1123445678999999953 57
Q ss_pred EEEEeeCCCceEEEeCCCCCcceeEEe
Q 016458 221 MFVSGSCDSTARLWDTRVASRAVRTFH 247 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~ 247 (389)
.|++-+.|+.+++||+.....+...+.
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 888889999999999987655544443
No 462
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.29 E-value=0.0044 Score=53.21 Aligned_cols=149 Identities=12% Similarity=0.193 Sum_probs=98.6
Q ss_pred CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE-EEEecCCeEEEEECCCCcee
Q 016458 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGHQL 285 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~ 285 (389)
.......|-|.+.+ ++.++.+..+..||-.. +...... ..+....++|.-++..+ +.+-..+.+.+||+.+....
T Consensus 35 v~pi~~~w~~e~~n-lavaca~tiv~~YD~ag--q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHN-LAVACANTIVIYYDKAG--QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred cccceeeEecCCCc-eehhhhhhHHHhhhhhc--ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 34455667774555 67777788888898552 2222222 23445567787777655 44557789999999864322
Q ss_pred eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
..-.. ..+. -.-+.|++.+..++.|...|.+.|++..+.+..... ..|..++++++|.+.+. .+.++.|.
T Consensus 111 qLE~g---g~~s--~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~----Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 111 QLESG---GTSS--KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM----GKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred HHhcc---Ccch--HHHHhhccCCccccccccccceEEEeccchhhhhhh----cccccceeEEEecccce-eeecCcHH
Confidence 21111 1111 122779999999999999999999998887776665 55899999999998764 55555555
Q ss_pred eeEE
Q 016458 366 NLKV 369 (389)
Q Consensus 366 ~i~i 369 (389)
.+.+
T Consensus 181 ~L~v 184 (615)
T KOG2247|consen 181 TLSV 184 (615)
T ss_pred HHHH
Confidence 5443
No 463
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.28 E-value=1.3 Score=31.45 Aligned_cols=113 Identities=9% Similarity=0.122 Sum_probs=69.7
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCC-------cceeEEeeeccceEEEEEec-----CCCEEEEEecCCeEEEEECC
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVAS-------RAVRTFHGHEGDVNTVKFFP-----DGNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~ 280 (389)
.|.. ....|++++..|.|.|++..... ..+..+. -...|++++-.+ +...|+.|+. ..+..||+.
T Consensus 5 kfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 3444 34467788888999999876432 2233333 455677776554 3456777665 589999998
Q ss_pred CCceeeEeeccCCCCCCCCeeEEEeCC----CCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 281 TGHQLQVYYQQHGENEIPHVTSIAFSI----SGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
....+....... .+.++.+-. +.+++++| .+..|.-||....+..++.
T Consensus 82 ~N~d~Fyke~~D------Gvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYKEVPD------GVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhhhCcc------ceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 776554433332 266666632 23445544 5668888888777766654
No 464
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.21 E-value=1.4 Score=31.37 Aligned_cols=117 Identities=9% Similarity=0.055 Sum_probs=72.4
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCC--------eeEEEeeCCCcEEEEEECC-----CCcEEEEecCCCcEEEEe
Q 016458 71 YSLDWTSERNRIVSASQDGRLIVWNALTSQ--------KTHAIKLPCAWVMTCAFSP-----TGQSVACGGLDSVCSIFN 137 (389)
Q Consensus 71 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vw~ 137 (389)
..-.|......|++++.-|+|.|++..... .+..+... ..|++++-.+ ....|+.|+ ...+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-QEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-CceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 344676777789999999999999876432 33444433 4477775433 345666665 45788999
Q ss_pred CCCCCCCCCCCcceeeecccccceEEEEEeeCC--CcEEEEeeCCCeEEEEeCCCCeeEEEe
Q 016458 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITTGLRTSVF 197 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~ 197 (389)
+..... ..++.-...|.++.+-.-+ +.-++..+.+..|.-||.+..+.....
T Consensus 80 V~~N~d--------~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSD--------LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCch--------hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 987542 1122233556666663322 234666666788888887766655543
No 465
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=94.08 E-value=6.7 Score=38.78 Aligned_cols=160 Identities=6% Similarity=-0.030 Sum_probs=83.5
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCCee----EEEe-eCCCcEEEEEECCCCcEEEEecCCCc---EEEEeCCCCCCCC
Q 016458 74 DWTSERNRIVSASQDGRLIVWNALTSQKT----HAIK-LPCAWVMTCAFSPTGQSVACGGLDSV---CSIFNLNSPTDKD 145 (389)
Q Consensus 74 ~~~~~~~~l~~~~~dg~v~iw~~~~~~~~----~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~---i~vw~~~~~~~~~ 145 (389)
.+-++.+.+++-+.+|.|+--+..+-+.. .... .....+..+.-......++.-+..|. +.+|++.......
T Consensus 511 dlI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~ 590 (957)
T PRK13979 511 ELIVVEDVVITLSNEGFIKRIPLKSYNRSNSNVEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKE 590 (957)
T ss_pred HcCCCcceEEEEecCCEEEEccccccccccccccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCC
Confidence 45567778899999998887765432111 0110 12244555544445555655566675 4456665543211
Q ss_pred CCCcceeee---cccccceEEE-EEee-CCCcEEEEeeCCCeEEEEeCCCCee----EEEecCcccCCCCCCeeEEEeeC
Q 016458 146 GNLPVSRML---SGHKGYVSCC-QYVP-DEDTHLITSSGDQTCVLWDITTGLR----TSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 146 ~~~~~~~~~---~~~~~~v~~~-~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
.-.+....+ ......|..+ .... +.+.+++.++..|.|+...+..-.. ...+. ....+.+..+....
T Consensus 591 ~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aik----L~e~DeLV~v~~~~ 666 (957)
T PRK13979 591 KGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALK----LKKGEKLIKVKLVD 666 (957)
T ss_pred CCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEE----cCCCCEEEEEEEcC
Confidence 111111111 1012334333 3321 1235788899999999988753221 11111 12345565555554
Q ss_pred CC--CcEEEEeeCCCceEEEeCC
Q 016458 217 SN--SRMFVSGSCDSTARLWDTR 237 (389)
Q Consensus 217 ~~--~~~l~~~~~dg~i~i~d~~ 237 (389)
.. ...++..+..|....|+..
T Consensus 667 ~~~~~~~Iil~Tk~G~airF~~~ 689 (957)
T PRK13979 667 RTREEKFIKIKTKKGLSFTVEEP 689 (957)
T ss_pred CCCCCCEEEEEeCCCcEEEEEHH
Confidence 22 2467777888888888764
No 466
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.05 E-value=3.4 Score=35.28 Aligned_cols=105 Identities=10% Similarity=0.118 Sum_probs=52.3
Q ss_pred cEEEEeeCC-----CeEEEEeCCCCeeE---EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-----CCceEEEeCCC
Q 016458 172 THLITSSGD-----QTCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----DSTARLWDTRV 238 (389)
Q Consensus 172 ~~l~~~~~d-----g~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~ 238 (389)
.+++.|+.+ ..+..+|+.+.... .... .. .....-.+++.. ++.+.+.|+. ...+..||+.+
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-~l--p~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIG-NL--PFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-CC--CcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCC
Confidence 567777754 35777787766531 2221 11 111111233333 5667777764 23578888775
Q ss_pred CCcceeEEee--eccceEEEEEecCCCEEEEEecCC----eEEEEECCCCc
Q 016458 239 ASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDG----TCRLFDIRTGH 283 (389)
Q Consensus 239 ~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 283 (389)
.. -..+.. ........+...++++.+.|+.++ .+.+||..+.+
T Consensus 149 ~~--W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 149 QE--WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CC--eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 41 112211 011111222233677777887654 35688887654
No 467
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.85 E-value=0.46 Score=37.75 Aligned_cols=78 Identities=10% Similarity=0.181 Sum_probs=51.1
Q ss_pred ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeec-------ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
+..++.+|++.+.+|.+++||+...+.......+...+. .....|..+....+| .-+++ -.+|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~-lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVT-LSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEE-EeCCCEEEeccc
Confidence 345788899999999999999998664322222222222 355678888888776 33444 345788888876
Q ss_pred CCeeEEE
Q 016458 190 TGLRTSV 196 (389)
Q Consensus 190 ~~~~~~~ 196 (389)
-+.-...
T Consensus 96 L~~W~~v 102 (219)
T PF07569_consen 96 LGCWIRV 102 (219)
T ss_pred cceeEEe
Confidence 6554443
No 468
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.85 E-value=4 Score=35.30 Aligned_cols=43 Identities=5% Similarity=-0.021 Sum_probs=21.4
Q ss_pred CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (389)
Q Consensus 181 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (389)
..+.+||..+.+-...-.. ......-.+++.. ++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~---p~~~r~~~~~~~~--~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGEN---PFLGTAGSAIVHK--GNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccC---CCCcCCCceEEEE--CCEEEEEeeee
Confidence 4688899887654433211 1001112233332 56777777653
No 469
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.84 E-value=2.1 Score=38.03 Aligned_cols=140 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred EEEeeCCCceEEEeCCCCCcceeEEeeeccc---------------------eEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458 222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGD---------------------VNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------------i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (389)
++.+..| .++.||-+...-.+..+++..++ |..+..++.|..++-.+.+|.+.++=.+
T Consensus 55 ~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~ 133 (741)
T KOG4460|consen 55 VVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPK 133 (741)
T ss_pred hhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchh
Q ss_pred CCceeeEeeccCCC---------------CCCCCeeEEEeCCCC---CEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458 281 TGHQLQVYYQQHGE---------------NEIPHVTSIAFSISG---RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (389)
Q Consensus 281 ~~~~~~~~~~~~~~---------------~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (389)
....-..+...... +..-.+..++|+|+. ..|..-++|+.|++||+.....+..........
T Consensus 134 rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpgepgRS 213 (741)
T KOG4460|consen 134 RWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGEPGRS 213 (741)
T ss_pred hcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCCcCCC
Q ss_pred CCCeeEEEECCCCCeEEeee
Q 016458 343 EGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 343 ~~~v~~~~~~~~~~~l~~~~ 362 (389)
...+.-..|-...-++....
T Consensus 214 ~tn~Si~sFGe~~~~~l~~~ 233 (741)
T KOG4460|consen 214 PTNVSILSFGEEESLVLNKG 233 (741)
T ss_pred CccceeeccCCcceeeeccC
No 470
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.56 E-value=8.9 Score=38.42 Aligned_cols=164 Identities=12% Similarity=0.098 Sum_probs=93.9
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEE-CC-------CCcEEEEecCCCcEEEEeCCCCC
Q 016458 71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF-SP-------TGQSVACGGLDSVCSIFNLNSPT 142 (389)
Q Consensus 71 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l~~~~~dg~i~vw~~~~~~ 142 (389)
+.+-+-|.-++.. .+.|+.+.+|+++++.....+.+-...|..+.. -| .=+++++-+.--.|.++-+.-..
T Consensus 82 ~~mGiFpeI~RaW-iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAW-ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred eeeccchhhcceE-EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 3344444433333 245788999999998887777776666666543 22 22445544455567776654433
Q ss_pred CCCCCCcce--eeecccccceEEEEEeeCCCcEEEEeeCCCeEEE--EeCCCC---e-eE-------------EEecCcc
Q 016458 143 DKDGNLPVS--RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL--WDITTG---L-RT-------------SVFGGEF 201 (389)
Q Consensus 143 ~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i--wd~~~~---~-~~-------------~~~~~~~ 201 (389)
......... ..+......|.|+....+| + ++.+|.||.|.= |....+ + +. ..+. ..
T Consensus 161 ~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG-R-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~-~~ 237 (1311)
T KOG1900|consen 161 FTGELSIFNTSFKISVDGVSVNCITYTENG-R-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL-SV 237 (1311)
T ss_pred ccCcccccccceeeecCCceEEEEEeccCC-c-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh-cC
Confidence 221111111 2222335678888877766 4 555566664332 222221 0 00 0000 11
Q ss_pred cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (389)
Q Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (389)
...+..+|..+++.. ..+++.+-+..|.|.+||+...
T Consensus 238 ~~~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCCCcceeeEecc-ccceeeeeccCceEEEEEccCC
Confidence 124577899999987 7788999999999999999863
No 471
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.32 E-value=5.2 Score=35.06 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=20.8
Q ss_pred eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (389)
Q Consensus 182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (389)
.+.+||..+..-...-.. ......-.++... ++++++.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~---p~~~~~~~a~v~~--~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGES---PFLGTAGSAVVIK--GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcC---CCCCCCcceEEEE--CCEEEEEeee
Confidence 588899888765442211 1111112233333 5567777764
No 472
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.02 E-value=1.1 Score=34.20 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=25.9
Q ss_pred cceEEEEEeeCC-----CcEEEEeeCCCeEEEEeCCC
Q 016458 159 GYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITT 190 (389)
Q Consensus 159 ~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~ 190 (389)
..+..++|+|.| .-+|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 35788889999999998664
No 473
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=92.94 E-value=0.28 Score=28.43 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKR 30 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (389)
++.||++|+..++.|+++++.++..+.
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 578999999999999999998887764
No 474
>PLN02153 epithiospecifier protein
Probab=92.86 E-value=5.7 Score=34.25 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=34.0
Q ss_pred CcEEEEeeCC-----CeEEEEeCCCCeeEEEecCcccC-CCCCCeeEEEeeCCCCcEEEEeeCC-----------CceEE
Q 016458 171 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQS-GHTADVLSVSISGSNSRMFVSGSCD-----------STARL 233 (389)
Q Consensus 171 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~i~i 233 (389)
+.+++.|+.+ ..+.+||+.+.+-...-...... .....-.+++.. ++++++.|+.+ ..+.+
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEE
Confidence 3667777653 35788998876543321100000 111112233333 56677777754 24677
Q ss_pred EeCCCC
Q 016458 234 WDTRVA 239 (389)
Q Consensus 234 ~d~~~~ 239 (389)
||..+.
T Consensus 164 yd~~~~ 169 (341)
T PLN02153 164 YNIADG 169 (341)
T ss_pred EECCCC
Confidence 887754
No 475
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.77 E-value=6 Score=34.27 Aligned_cols=187 Identities=12% Similarity=0.193 Sum_probs=103.4
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC---CCCc---EEEEeeCC---CceEEEeCCCCCcc
Q 016458 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG---SNSR---MFVSGSCD---STARLWDTRVASRA 242 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~---~l~~~~~d---g~i~i~d~~~~~~~ 242 (389)
.+++....++-+.+||+..... ..+. .+.+..+..-. -++. +++++..+ ..|++|.+......
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~l-q~~~-------~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKEL-QSLP-------VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-EE-EEE--------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred ceEEEEeCCCCEEEEcCCCcEE-Eeec-------CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 5788888889999999976544 4441 12334333321 0222 23333332 46999977632223
Q ss_pred eeEEee-------eccceEEEEEe--c-CCC-EEEEEecCCeEEEEECCC---Cc----eeeEeeccCCCCCCCCeeEEE
Q 016458 243 VRTFHG-------HEGDVNTVKFF--P-DGN-RFGTGSDDGTCRLFDIRT---GH----QLQVYYQQHGENEIPHVTSIA 304 (389)
Q Consensus 243 ~~~~~~-------~~~~i~~~~~~--~-~~~-~l~~~~~dg~i~i~d~~~---~~----~~~~~~~~~~~~~~~~i~~~~ 304 (389)
+..+.. ....+..+|+. | +|. +.++...+|.+..|.+.. +. .++.+.... .+-.|.
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s------Q~EGCV 214 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS------QPEGCV 214 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-------EEEEE
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC------cceEEE
Confidence 333321 11236677764 3 344 566778899998888752 22 334443322 378888
Q ss_pred eCCCCCEEEEEecCCcEEEEEccc-----ceEEEeecCcCCCCCCCeeEEEEC--CCC--CeEEeeeCCCeeEEeeccee
Q 016458 305 FSISGRLLFAGYSNGDCYVWDTLL-----AKVVLNLGSLQNSHEGRITCLGLS--ADG--SALCTGSWDTNLKVNLGFWR 375 (389)
Q Consensus 305 ~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~v~~~~~~--~~~--~~l~~~~~dg~i~i~~~~W~ 375 (389)
......+|+.+-++--|.-|+.+. +..+..... ......|..|++- +++ -+|++.-.++...| |+
T Consensus 215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g--~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~V----y~ 288 (381)
T PF02333_consen 215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG--DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAV----YD 288 (381)
T ss_dssp EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSS--SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEE----EE
T ss_pred EecccCCEEEecCccEEEEEecCCCCCCcceeeecccc--cccccCccceEEEecCCCCeEEEEEcCCCCeEEE----Ee
Confidence 888888999998887777777652 222222211 2344577777764 333 34555555788999 98
Q ss_pred ccc
Q 016458 376 VQE 378 (389)
Q Consensus 376 ~~~ 378 (389)
.+.
T Consensus 289 r~~ 291 (381)
T PF02333_consen 289 REG 291 (381)
T ss_dssp SST
T ss_pred cCC
Confidence 774
No 476
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.52 E-value=4.8 Score=32.50 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC---CCceEEEeCCC-----CCcceeEEeeeccceEEE
Q 016458 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRV-----ASRAVRTFHGHEGDVNTV 256 (389)
Q Consensus 185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-----~~~~~~~~~~~~~~i~~~ 256 (389)
+||+.+++..... ......+.+-.+.+ ++.++.+|+. ...+++++... ........-.....-.+.
T Consensus 50 ~yD~~tn~~rpl~-----v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 50 EYDPNTNTFRPLT-----VQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEecCCCcEEecc-----CCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc
Q ss_pred EEecCCCEEEEEecCC-eEEEEEC----CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458 257 KFFPDGNRFGTGSDDG-TCRLFDI----RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (389)
Q Consensus 257 ~~~~~~~~l~~~~~dg-~i~i~d~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (389)
..-|||+.|+.|+.+. ...+|.- ........+...........--.+...|+|++++.+..+. .|||..+.+.
T Consensus 124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v 201 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTV 201 (243)
T ss_pred eECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeE
Q ss_pred EEeecCcCCC
Q 016458 332 VLNLGSLQNS 341 (389)
Q Consensus 332 ~~~~~~~~~~ 341 (389)
+..+..+..+
T Consensus 202 ~~~lP~lPg~ 211 (243)
T PF07250_consen 202 VRTLPDLPGG 211 (243)
T ss_pred EeeCCCCCCC
No 477
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.45 E-value=0.96 Score=24.54 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=27.7
Q ss_pred CCCCeEEEEe-cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEE
Q 016458 77 SERNRIVSAS-QDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117 (389)
Q Consensus 77 ~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~ 117 (389)
|++++|+++. .+++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677666655 5789999999988888877764 33344444
No 478
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.35 E-value=4.4 Score=31.69 Aligned_cols=113 Identities=10% Similarity=0.128 Sum_probs=0.0
Q ss_pred EEcCCC-CeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEe---cCCC---cEEEE---------
Q 016458 74 DWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACG---GLDS---VCSIF--------- 136 (389)
Q Consensus 74 ~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~---~~dg---~i~vw--------- 136 (389)
++...| +.|+.+...+.|.+|++............. +.|..+.++..|+++++- .... .+++|
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Q ss_pred -----------eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeC
Q 016458 137 -----------NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (389)
Q Consensus 137 -----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 188 (389)
...............-..-.-..++.+++-.|-.+++++ +.++.+.+|.+
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV--g~~~~l~lf~l 162 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV--GCGNKLVLFTL 162 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE--EcCCEEEEEEE
No 479
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.25 E-value=6 Score=33.07 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=91.8
Q ss_pred eEEEEeCCCCeeEEEecCcccCC-CCCCeeEEEeeCCCC----cEEE-EeeCCCceEEEeCCCCCcceeEEee-------
Q 016458 182 TCVLWDITTGLRTSVFGGEFQSG-HTADVLSVSISGSNS----RMFV-SGSCDSTARLWDTRVASRAVRTFHG------- 248 (389)
Q Consensus 182 ~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~----~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~------- 248 (389)
.|.+||+.+++.+..+....... ..+.+..+.+...++ .++. +=...+.|.++|+.++ +..+.+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~-~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATG-KSWRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTT-EEEEEETCGCTTS-S
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCC-cEEEEecCCcceecc
Confidence 57788999988877775432222 356678888876332 2333 3334468999999876 32222211
Q ss_pred ------------eccceEEEEEec---CCCEEEEEecCCeEEEEECCC-----Cce---------eeEeeccCCCCCCCC
Q 016458 249 ------------HEGDVNTVKFFP---DGNRFGTGSDDGTCRLFDIRT-----GHQ---------LQVYYQQHGENEIPH 299 (389)
Q Consensus 249 ------------~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~-----~~~---------~~~~~~~~~~~~~~~ 299 (389)
....+..++.+| +++.|+-....+. ++|.+.+ ... ...+.. . ...
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k----~~~ 187 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD-K----GSQ 187 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE--------S
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc-c----CCC
Confidence 122356666655 5556665543321 2333221 110 011100 0 123
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEEcccce---EEEeecCcCCCC-CCCeeEEEECC--CCCeEEee
Q 016458 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAK---VVLNLGSLQNSH-EGRITCLGLSA--DGSALCTG 361 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~ 361 (389)
...++++++|.++++--..+.|..|+....- ....+.. ... -..+.++.+.+ +|.+.+..
T Consensus 188 s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~--d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 188 SDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ--DPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE---CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE--cCceeeccceeeeccccCceEEEEE
Confidence 5678899999988888889999999987611 1111110 222 35678899988 77665554
No 480
>PLN02193 nitrile-specifier protein
Probab=92.19 E-value=8.9 Score=34.85 Aligned_cols=108 Identities=8% Similarity=-0.029 Sum_probs=53.9
Q ss_pred CcEEEEeeCCC-----eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC----CceEEEeCCCCCc
Q 016458 171 DTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----STARLWDTRVASR 241 (389)
Q Consensus 171 ~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~ 241 (389)
+.+++.|+.++ .+..||+.+.+-...-.......... -..++.. ++++++.++.+ ..+.+||+.+. .
T Consensus 279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~-~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~-~ 354 (470)
T PLN02193 279 ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRG-GAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQD-K 354 (470)
T ss_pred CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCC-CcEEEEE--CCcEEEEECCCCCccCceEEEECCCC-E
Confidence 36777777543 46788888765433211000001111 1222222 45666666655 45888998764 1
Q ss_pred ceeEEeee-----ccceEEEEEecCCCEEEEEecC--------------CeEEEEECCCCce
Q 016458 242 AVRTFHGH-----EGDVNTVKFFPDGNRFGTGSDD--------------GTCRLFDIRTGHQ 284 (389)
Q Consensus 242 ~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~ 284 (389)
...+... .....++ ..-++++++.|+.+ ..+.+||+.+.+-
T Consensus 355 -W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 355 -WTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred -EEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 2222111 0011122 22256777777753 2478888876544
No 481
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.17 E-value=1.1 Score=24.32 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=23.5
Q ss_pred CCCCEEEEEe-cCCcEEEEEcccceEEEeec
Q 016458 307 ISGRLLFAGY-SNGDCYVWDTLLAKVVLNLG 336 (389)
Q Consensus 307 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 336 (389)
|++++|+++. .++.|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5777777765 47799999999888888773
No 482
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.95 E-value=13 Score=36.15 Aligned_cols=197 Identities=13% Similarity=0.068 Sum_probs=107.5
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeEEEec-Ccc--cCCCCCCeeEEEee-CCCCcEEEEeeCC---CceEEEeCCCCC----
Q 016458 172 THLITSSGDQTCVLWDITTGLRTSVFG-GEF--QSGHTADVLSVSIS-GSNSRMFVSGSCD---STARLWDTRVAS---- 240 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~--~~~~~~~v~~~~~~-~~~~~~l~~~~~d---g~i~i~d~~~~~---- 240 (389)
.-+++....|.+++|=.+......... .+. .......++..++. ..+++.++.++.+ +.|++|.+.-..
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 346677888999999774332222221 100 01234556666665 2355455554544 788887532110
Q ss_pred ----c---ceeEEe-e--------------------eccceEEEEEec-------CCCEEEEEec----CCeEEEEECCC
Q 016458 241 ----R---AVRTFH-G--------------------HEGDVNTVKFFP-------DGNRFGTGSD----DGTCRLFDIRT 281 (389)
Q Consensus 241 ----~---~~~~~~-~--------------------~~~~i~~~~~~~-------~~~~l~~~~~----dg~i~i~d~~~ 281 (389)
. +...+. . .-..++.+.|-+ ....+++.+. ...|.-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 0 111110 0 112455666654 2234444432 34699999876
Q ss_pred Cce-eeEeeccC--------------------CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee----c
Q 016458 282 GHQ-LQVYYQQH--------------------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL----G 336 (389)
Q Consensus 282 ~~~-~~~~~~~~--------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~ 336 (389)
... +....... .......|.+++...-+.+++....||+|.++|..+.+.+... .
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 431 11110000 0011234677777777889999999999999998776554333 1
Q ss_pred Cc-----------CCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458 337 SL-----------QNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 337 ~~-----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 368 (389)
.. ...+..++..++|||++..++.-..+|.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 00 001112445689999999999999999865
No 483
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=91.81 E-value=2.1 Score=34.62 Aligned_cols=71 Identities=8% Similarity=0.109 Sum_probs=48.6
Q ss_pred ccCcEEEEEEcCC-------CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEE---CCCCcEEEEecCCCcEEE
Q 016458 66 HAGKVYSLDWTSE-------RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF---SPTGQSVACGGLDSVCSI 135 (389)
Q Consensus 66 h~~~v~~~~~~~~-------~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~dg~i~v 135 (389)
+...|+||+--+. -..|+.|+.+|.|.|.|..............-++.-.+. ..-.-.+++++.||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 4455777765431 147999999999999999888888888777665532222 112345777888998876
Q ss_pred E
Q 016458 136 F 136 (389)
Q Consensus 136 w 136 (389)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 4
No 484
>PLN02193 nitrile-specifier protein
Probab=91.81 E-value=9.8 Score=34.57 Aligned_cols=152 Identities=12% Similarity=0.043 Sum_probs=71.1
Q ss_pred cEEEEeeCC-------CeEEEEeCCCCeeEEEecCcccCCCCCC-eeEEEeeCCCCcEEEEeeCC-----CceEEEeCCC
Q 016458 172 THLITSSGD-------QTCVLWDITTGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCD-----STARLWDTRV 238 (389)
Q Consensus 172 ~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~ 238 (389)
.+++.|+.+ ..+.+||+.+..-.... .......... -.+++.. ++.+++.|+.+ ..+..||+.+
T Consensus 177 ~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~-~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 177 KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISP-ATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCC-CCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECCC
Confidence 566666643 24778898876544221 1000001011 1122222 56677777765 3577888875
Q ss_pred CCcceeEEeee---ccc--eEEEEEecCCCEEEEEecCC-----eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC
Q 016458 239 ASRAVRTFHGH---EGD--VNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308 (389)
Q Consensus 239 ~~~~~~~~~~~---~~~--i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 308 (389)
. ....+... ..+ -.+++. -++++.+.|+.++ .+..||+.+.+-...-..............+. -+
T Consensus 254 ~--~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~ 328 (470)
T PLN02193 254 N--EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQ 328 (470)
T ss_pred C--EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--EC
Confidence 4 11111111 001 112222 2566677777543 46778877654322111000000000111222 25
Q ss_pred CCEEEEEecC----CcEEEEEcccceE
Q 016458 309 GRLLFAGYSN----GDCYVWDTLLAKV 331 (389)
Q Consensus 309 ~~~l~~~~~d----g~i~i~d~~~~~~ 331 (389)
+++++.++.+ ..+.+||+.+.+-
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCCCEE
Confidence 6776766655 4689999887654
No 485
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=91.68 E-value=13 Score=35.66 Aligned_cols=160 Identities=11% Similarity=-0.020 Sum_probs=78.8
Q ss_pred EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCe-eEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (389)
Q Consensus 70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (389)
+..-++-++...+++.+.+|.|+--....-.. ...++.. ..+..+........++..+.+|.+.-+....-.......
T Consensus 485 ~~~~~~i~~e~v~VilTk~G~IKr~~~~~~~~saikLKeg-D~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP~GR~aG 563 (735)
T TIGR01062 485 VSEIDMIPKEPVTIILSKMGWVRSAKGHDIDLSTLKYKAG-DSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLPSARGQG 563 (735)
T ss_pred cchhhcccCcceEEEEecCCEEEeccccccchhccCcCCC-CeEEEEEEecCCCEEEEEECCCeEEEEEhHhcCcCccCC
Confidence 44445567778889999999888665443221 1122222 335555445555567777778877666544311111111
Q ss_pred cceee-ec-ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-------eeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 149 PVSRM-LS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------LRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 149 ~~~~~-~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
..... +. .....|..+....++ ..++..+..|.++...+..- .....+ . ....+..+.....+.
T Consensus 564 gpV~~~L~L~~gE~Iv~~~~v~~~-~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~L-----k-~~d~lv~v~~v~~~d 636 (735)
T TIGR01062 564 EPLTGKLLLPIGATITNILMYSPN-QLLLMASDAGYGFLCNFNDLIARNKAGKALINL-----P-ENASVIAPLPVNGDS 636 (735)
T ss_pred ceeEeeecCCCCCEEEEEEEecCC-cEEEEEEcCCcEEEEEhHhccccCcCCeEEEEe-----C-CCCEEEEEEEEcCCC
Confidence 11111 11 122334444433332 45777888888777665322 222222 1 122233322222122
Q ss_pred cEEEEeeCCCceEEEeCC
Q 016458 220 RMFVSGSCDSTARLWDTR 237 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~ 237 (389)
..++..+.+|.+..+++.
T Consensus 637 d~V~liT~~GrlLrf~v~ 654 (735)
T TIGR01062 637 DMIAAITEAGRMLVFPID 654 (735)
T ss_pred CEEEEEeCCCcEEEEEHH
Confidence 345566667777776654
No 486
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.48 E-value=6 Score=37.05 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=66.6
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
..++++.-+|.++.++.+..||.|++|++..... ..+.....+-..+.|...| +++++.|..+.-|.-
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q--------ski~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~- 82 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ--------SKICEEAKPKENLVFTNHG---LVTATSDRRALAWKE- 82 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccch--------hhhhhhcCCccceeeeccc---eEEEeccchhheeec-
Confidence 4577888899999999999999999999876431 1111122333445666654 778888888888863
Q ss_pred CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeC
Q 016458 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 236 (389)
+|.....+... ........++...|...+. +|+--|-|.-+|.
T Consensus 83 dgvvqqqfdyn--dqsekefss~~cdptaqnv--vgtlcggv~q~dc 125 (1636)
T KOG3616|consen 83 DGVVQQQFDYN--DQSEKEFSSILCDPTAQNV--VGTLCGGVEQFDC 125 (1636)
T ss_pred cCcchhhcccc--chhhhhccceecCchhhhh--hhhhccceeeehH
Confidence 33333333111 2233445566666644433 3444455666653
No 487
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.43 E-value=7.7 Score=34.67 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=25.4
Q ss_pred CCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 344 GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 344 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
..|.+++..+..+.|++...+|.|.+ |++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~----w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQV----WDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEE----EEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEE----EEEeC
Confidence 34999999998899999999999999 99974
No 488
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.41 E-value=8.3 Score=32.94 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=50.9
Q ss_pred CCCeEEEEecC-----CcEEEEeCCCCCee---EEEe-eCCCcEEEEEECCCCcEEEEecC-----CCcEEEEeCCCCCC
Q 016458 78 ERNRIVSASQD-----GRLIVWNALTSQKT---HAIK-LPCAWVMTCAFSPTGQSVACGGL-----DSVCSIFNLNSPTD 143 (389)
Q Consensus 78 ~~~~l~~~~~d-----g~v~iw~~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~~~ 143 (389)
++.+++.|+.+ ..+..+|+.+.+-. ..+. .+...-...+..-++++.+.|+. ...+..||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~- 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQE- 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCC-
Confidence 44566667654 35666777665431 1111 11110111111225666677764 2357778877533
Q ss_pred CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC----eEEEEeCCCCeeE
Q 016458 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVLWDITTGLRT 194 (389)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~ 194 (389)
+.....+... ..........++ .+++.|+.++ .+.+||+.+.+-.
T Consensus 151 ----W~~~~~~p~~-~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 151 ----WFELPDFPGE-PRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred ----eeECCCCCCC-CCCcceEEEECC-EEEEEcCCCCccccceEEEecCCCeeE
Confidence 2111111111 111112222333 6777777653 3568898876543
No 489
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.32 E-value=9 Score=33.13 Aligned_cols=24 Identities=4% Similarity=-0.049 Sum_probs=15.3
Q ss_pred cEEEEeeCC-----------CeEEEEeCCCCeeEE
Q 016458 172 THLITSSGD-----------QTCVLWDITTGLRTS 195 (389)
Q Consensus 172 ~~l~~~~~d-----------g~i~iwd~~~~~~~~ 195 (389)
.+.+.|+.+ ..+..||..+..-..
T Consensus 65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~ 99 (346)
T TIGR03547 65 KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQK 99 (346)
T ss_pred EEEEEeCCCCCCCCCcceecccEEEEECCCCEEec
Confidence 567777653 247778887765443
No 490
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.82 E-value=1.8 Score=40.22 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=44.0
Q ss_pred CCcEEEEeeCCCceEEEeCCC---CCcceeEE--ee--------------------eccceEEEEEec----CCCEEEEE
Q 016458 218 NSRMFVSGSCDSTARLWDTRV---ASRAVRTF--HG--------------------HEGDVNTVKFFP----DGNRFGTG 268 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~--~~--------------------~~~~i~~~~~~~----~~~~l~~~ 268 (389)
+...++.+..||.+....... ........ .. .......+++++ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 455677777888888777654 11111110 00 112345566665 77899999
Q ss_pred ecCCeEEEEECCCCceeeEeec
Q 016458 269 SDDGTCRLFDIRTGHQLQVYYQ 290 (389)
Q Consensus 269 ~~dg~i~i~d~~~~~~~~~~~~ 290 (389)
+.|+.+++||+.++.++.....
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEET
T ss_pred eCCCeEEEEECCCCeEEEEecc
Confidence 9999999999999998666533
No 491
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=12 Score=37.47 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=26.2
Q ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (389)
....++|+|....++.+...|.|++|-...
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccc
Confidence 456789999999999999999999997654
No 492
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.76 E-value=8.6 Score=31.94 Aligned_cols=98 Identities=13% Similarity=0.218 Sum_probs=58.1
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccCC
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSG 204 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~ 204 (389)
..|++||..+.+ ....-.+-.+.|.++.|..+. ++++.|. ....+..||..+......- ......
T Consensus 16 ~~lC~yd~~~~q-------W~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~-~~~s~~ 86 (281)
T PF12768_consen 16 PGLCLYDTDNSQ-------WSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG-GGSSNS 86 (281)
T ss_pred CEEEEEECCCCE-------eecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecC-Cccccc
Confidence 458999988744 233333456889999998653 5666654 4567889999887543332 100012
Q ss_pred CCCCeeEEEeeCCCCc-EEEEee-CCC--ceEEEeCC
Q 016458 205 HTADVLSVSISGSNSR-MFVSGS-CDS--TARLWDTR 237 (389)
Q Consensus 205 ~~~~v~~~~~~~~~~~-~l~~~~-~dg--~i~i~d~~ 237 (389)
-.+++..+.+...+.. +.+.|. .+| .|..||-.
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 3477888887554443 444443 233 45666544
No 493
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=90.65 E-value=2.1 Score=25.07 Aligned_cols=39 Identities=26% Similarity=0.170 Sum_probs=31.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 016458 2 SSSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAG 40 (389)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (389)
|+.++-|++++.+++++..+|+.+-.-.++......+..
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe~l~q 51 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNASPEQLAQ 51 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 788999999999999999999999888887655444433
No 494
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=90.56 E-value=9.2 Score=31.98 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=63.3
Q ss_pred EEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC------------------
Q 016458 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN------------------ 318 (389)
Q Consensus 257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------ 318 (389)
.|+ +|++.++-+..|.+.-+|..+|+.......... ...++|. |.++++|-+.
T Consensus 209 RWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~------~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~ 279 (335)
T TIGR03032 209 RWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGF------TRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDA 279 (335)
T ss_pred cEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCC------Cccccee--CCEEEEEeccccCCCCcCCCchhhhhhh
Confidence 444 778888888999999999887766555433322 5778887 8888776431
Q ss_pred --CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458 319 --GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (389)
Q Consensus 319 --g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (389)
.-|.+.|+.+|..+..+.. .+--..+.++++-|.-+
T Consensus 280 ~~CGv~vidl~tG~vv~~l~f--eg~v~EifdV~vLPg~r 317 (335)
T TIGR03032 280 LGCGVAVIDLNSGDVVHWLRF--EGVIEEIYDVAVLPGVR 317 (335)
T ss_pred hcccEEEEECCCCCEEEEEEe--CCceeEEEEEEEecCCC
Confidence 2478889999998877743 44456788888888643
No 495
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.55 E-value=15 Score=34.41 Aligned_cols=165 Identities=10% Similarity=0.051 Sum_probs=0.0
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeC---------CCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEE
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNA---------LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIF 136 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw 136 (389)
.+.|-.+.|.++++.+++...+|.|.+||. .....-..-.....-|..........++++.+. ++.=..|
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc-ccCCCCCCeeEEEee
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSIS 215 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~ 215 (389)
.+-.-...............+........|.-+.+.+..- .++.|.+|++...+....+... +.......+.++..-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Q ss_pred CCCCcEEEEeeCCCceEEEeC
Q 016458 216 GSNSRMFVSGSCDSTARLWDT 236 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~ 236 (389)
. .++.|++.. +.|++.|+
T Consensus 287 s-~nRvLLs~~--nkIyLld~ 304 (670)
T PF10395_consen 287 S-PNRVLLSVN--NKIYLLDL 304 (670)
T ss_pred C-CCeEEEEcC--CEEEEEee
No 496
>PRK00736 hypothetical protein; Provisional
Probab=90.53 E-value=1.3 Score=27.47 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDV 36 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (389)
.+++|++-......++..|..+++...+++...
T Consensus 20 tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 20 TIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666777777777777776665543
No 497
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.32 E-value=20 Score=35.33 Aligned_cols=178 Identities=15% Similarity=0.103 Sum_probs=95.5
Q ss_pred eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc-EEEEee-----------CCCceEEEeCCCCCcceeEEeee
Q 016458 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGS-----------CDSTARLWDTRVASRAVRTFHGH 249 (389)
Q Consensus 182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~ 249 (389)
.|++.|..++..+..+.... ....-.+..+.|+..+.. +++++. .+|.++.|++-..+..+..+...
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~-ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQ-NEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecC-CcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 37777777776666553221 122234556666653333 333332 24456777665444433333222
Q ss_pred ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc-
Q 016458 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL- 328 (389)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 328 (389)
+-+-.-.+..|...++++|- ...+++||+-..+.++....... ...|+.+.+ .+..+++|...-.+.++..+.
T Consensus 933 ~~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~---p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFI---PNRISSIQT--YGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred CCCccceEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccC---ceEEEEEee--cceEEEEeeccceEEEEEEecC
Confidence 21222345667666666554 45899999987766655443321 123666666 466888887776776654433
Q ss_pred ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.+.+..+.. ..-.-.|+++.+- |...++.|..=|.+.+
T Consensus 1007 ~n~l~~fad--D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1007 DNQLIVFAD--DPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred CCeEEEEeC--CCccceeeEEEEe-cCCceeeccccCcEEE
Confidence 223333311 2233356666654 3445777766677665
No 498
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.15 E-value=1.7 Score=37.78 Aligned_cols=169 Identities=14% Similarity=0.007 Sum_probs=98.1
Q ss_pred eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE--Eee-CC---CcEE-EEEECCCCcEEEEecCCC
Q 016458 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--IKL-PC---AWVM-TCAFSPTGQSVACGGLDS 131 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~~-~~---~~v~-~~~~~~~~~~l~~~~~dg 131 (389)
.++.+..-...|..+-..|||+.|..-+. ..+.++++.+...... ... +. ..|+ .+..-..|..++++..||
T Consensus 212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 33345556667889999999998776655 5788888765432211 111 11 1122 112233566788889999
Q ss_pred cEEEE-eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458 132 VCSIF-NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (389)
Q Consensus 132 ~i~vw-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 210 (389)
.|.-| |...... ......+.++-...++..+.--.+ .+-+++-+..|++..+.-...+.... ......+.
T Consensus 291 ~vsQWFdvr~~~~--p~l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~~~~lL~------~~~~~~~~ 361 (733)
T COG4590 291 LVSQWFDVRRDGQ--PHLNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTSEKLLLF------ERAYQAPQ 361 (733)
T ss_pred ceeeeeeeecCCC--CcceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeecccCcceeh------hhhhcCcc
Confidence 98877 4433221 122233333333344443332222 35577778888888877554443332 22334677
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458 211 SVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (389)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (389)
-++++| +++++++- ..|.++++.+++.
T Consensus 362 ~~~~Sp-~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 362 LVAMSP-NQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred eeeeCc-ccchheee-cCCceEEEEecCC
Confidence 788999 66666653 4678999988765
No 499
>PLN02153 epithiospecifier protein
Probab=90.14 E-value=11 Score=32.40 Aligned_cols=61 Identities=18% Similarity=0.030 Sum_probs=30.7
Q ss_pred CCCeEEEEecC-------CcEEEEeCCCCCeeEEEee---CCC---cEEEEEECCCCcEEEEecCC-----CcEEEEeCC
Q 016458 78 ERNRIVSASQD-------GRLIVWNALTSQKTHAIKL---PCA---WVMTCAFSPTGQSVACGGLD-----SVCSIFNLN 139 (389)
Q Consensus 78 ~~~~l~~~~~d-------g~v~iw~~~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~ 139 (389)
++.+++.|+.+ ..+.+||..+.+-...... +.. ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34566666653 2577888766532221111 110 1112222 56677777753 247778876
Q ss_pred C
Q 016458 140 S 140 (389)
Q Consensus 140 ~ 140 (389)
+
T Consensus 110 t 110 (341)
T PLN02153 110 K 110 (341)
T ss_pred C
Confidence 5
No 500
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.08 E-value=11 Score=31.94 Aligned_cols=242 Identities=12% Similarity=0.056 Sum_probs=112.0
Q ss_pred CCeEEEEecCCcEEEEeCCC--CCeeEEEeeCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCC----C-CC---
Q 016458 79 RNRIVSASQDGRLIVWNALT--SQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDK----D-GN--- 147 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~----~-~~--- 147 (389)
+++|+.|+.+| +.+.+... .+.... .+...|+++...+..+.|++- +....++++++..-... . ..
T Consensus 13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEG-LYVLNISDQPGTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCc-eEEEEcccCCCCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 36899999998 55555544 222222 344579999998877766554 44455999998542210 0 00
Q ss_pred CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEE-EecC--cccCCCCCCeeEEEeeCC-CCcEEE
Q 016458 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS-VFGG--EFQSGHTADVLSVSISGS-NSRMFV 223 (389)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~--~~~~~~~~~v~~~~~~~~-~~~~l~ 223 (389)
.......-+|................++++....+|.++......... .+.. ........++..+..++. ....+.
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 000011223333233333332222334555556677776543321110 0100 000111223333333331 244566
Q ss_pred EeeCCCceEEEeCCC--C--Ccc-eeE-Eeeec-cceEEEEEecCCCEEEEEecCCeEEEEECCCCceee--EeeccCCC
Q 016458 224 SGSCDSTARLWDTRV--A--SRA-VRT-FHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQHGE 294 (389)
Q Consensus 224 ~~~~dg~i~i~d~~~--~--~~~-~~~-~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~ 294 (389)
.|+..+...++++.. . ... +.. ..... .++.... -+++.+|++- |....+.|....+... .+...
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l~w~--- 243 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLLCY--DEFGVFVNLYGKRRSRNPILHWE--- 243 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEEEE--CcEEEEEeCCCCccccceEEEcC---
Confidence 666543344454432 1 000 000 00111 2333333 3344444433 3344555544212111 11111
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
....++++. ..+|++-..+ .|.|+++.+++.+.++
T Consensus 244 ---~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i 278 (302)
T smart00036 244 ---FMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQEL 278 (302)
T ss_pred ---CcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEE
Confidence 124667765 4677666544 5999999999888877
Done!